BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780728|ref|YP_003065141.1| pilus assembly protein
[Candidatus Liberibacter asiaticus str. psy62]
         (263 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040405|gb|ACT57201.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 263

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 263/263 (100%), Positives = 263/263 (100%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV
Sbjct: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG
Sbjct: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID
Sbjct: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
           HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ
Sbjct: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240

Query: 241 EEGKEIQIIKAGVIVNKDGEGIS 263
           EEGKEIQIIKAGVIVNKDGEGIS
Sbjct: 241 EEGKEIQIIKAGVIVNKDGEGIS 263


>gi|315121892|ref|YP_004062381.1| pilus assembly protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495294|gb|ADR51893.1| pilus assembly protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 267

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 163/266 (61%), Positives = 211/266 (79%), Gaps = 3/266 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK TRLMG+VVSG+FAL+AGIIAMRLVS HH+Q EE++ +   +  NVL++K +L VGMV
Sbjct: 1   MKFTRLMGLVVSGLFALLAGIIAMRLVSHHHLQKEEIVAQPSIRLSNVLMAKSNLKVGMV 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +TP++LEWVAFP ENV  GF+DDV +PNA++EL G +VR+PILKGDPIR EKLVD G  G
Sbjct: 61  ITPDVLEWVAFPAENVVVGFVDDVSRPNAIEELKGSIVRIPILKGDPIRFEKLVDHGQHG 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +SSLL KGKRA  +DIS+S+AVGG++KPNDHVDV+MVR + ERK    VVLSN+RV+AID
Sbjct: 121 VSSLLSKGKRAVALDISVSNAVGGLVKPNDHVDVLMVRLIGERKTKTDVVLSNVRVLAID 180

Query: 181 HNIDSDERVLV--GSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVW 237
             +D++       G+TATLELTPMQAK L+AAQ +A KL+LVLRSI+D + +  E +D  
Sbjct: 181 QTLDAEGEPNGLIGNTATLELTPMQAKTLLAAQQIASKLTLVLRSISDFHSTDLEIADFN 240

Query: 238 DVQEEGKEIQIIKAGVIVNKDGEGIS 263
             ++ G+ IQ+IK+G+I NKDGE +S
Sbjct: 241 LGEDGGRGIQVIKSGIISNKDGEEMS 266


>gi|227823970|ref|YP_002827943.1| pilus assembly protein CpaB [Sinorhizobium fredii NGR234]
 gi|227342972|gb|ACP27190.1| pilus assembly protein CpaB [Sinorhizobium fredii NGR234]
          Length = 271

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 102/263 (38%), Positives = 161/263 (61%), Gaps = 5/263 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R++ + V+   A +AG++AM+L      +  E + E     INVL++   L VG  
Sbjct: 1   MKPVRIIILAVAVGSAAMAGLLAMKLTRSPAQRMAEPLVEQA-PSINVLVASKSLPVGSR 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + W+A+P++ V +G I + ++P A+ +L G +VR+P+  G+P+R EK+ D  N  
Sbjct: 60  LGADSIHWLAWPKDGVAEGMITEENRPAAIDDLAGAVVRLPLFDGEPVRQEKIADPSNRI 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +SSLLP GKRA   +I++++  GG I PND VDV+MVR           VLSN+RV+AID
Sbjct: 120 MSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDVYLTETVLSNVRVLAID 179

Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236
             ++  +   + ++G+TATLELTP Q+K +  AQ +A ++SL LRS+AD   + +E +D 
Sbjct: 180 QQVEEKDDGSKSVIGTTATLELTPDQSKVMTVAQQMAERISLALRSVADAQEADTEAADY 239

Query: 237 WDVQEEGKEIQIIKAGVIVNKDG 259
               +    IQ+IK+G IV  DG
Sbjct: 240 LLSGDGQPSIQVIKSGSIVKNDG 262


>gi|15963893|ref|NP_384246.1| putative pilus assembly signal peptide protein [Sinorhizobium
           meliloti 1021]
 gi|307315790|ref|ZP_07595304.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C]
 gi|307320425|ref|ZP_07599842.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83]
 gi|15073068|emb|CAC41527.1| Putative pilus assembly signal peptide protein [Sinorhizobium
           meliloti 1021]
 gi|306893991|gb|EFN24760.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83]
 gi|306898558|gb|EFN29231.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C]
          Length = 269

 Score =  199 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 106/266 (39%), Positives = 161/266 (60%), Gaps = 5/266 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+  R++ + V+   A +AG++AM+L      QT E + E     INVL++   L VG  
Sbjct: 1   MRPVRIIILAVAIGSAAMAGLLAMKLTRAPAPQTAEPVIEQA-PTINVLVAGKSLPVGSR 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + W A+P++ V +G I + ++P A+++L G +VR+PI  G+P+R EK+ D  N  
Sbjct: 60  LGADSIHWKAWPKDGVAEGMITEENRPAAVEDLAGAVVRLPIFTGEPVRQEKIADASNRI 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +SSLLP GKRA   +I++++  GG I PND VDV+MVR           VLSN+RV+AID
Sbjct: 120 MSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDLYLTETVLSNVRVLAID 179

Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236
             I+  E   + +VG+TATLELTP Q+K +  AQ +A ++SL LRS+AD     +  +D 
Sbjct: 180 QQIEEKEDGSKAVVGTTATLELTPDQSKVMTVAQQMADRISLALRSVADAQEPDTTAADY 239

Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEGI 262
               +    IQ+IK+G IV  DG  +
Sbjct: 240 LLNGDGRPSIQVIKSGSIVKGDGVAL 265


>gi|325291660|ref|YP_004277524.1| components of type IV pilus [Agrobacterium sp. H13-3]
 gi|325059513|gb|ADY63204.1| components of type IV pilus [Agrobacterium sp. H13-3]
          Length = 268

 Score =  194 bits (494), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 109/268 (40%), Positives = 158/268 (58%), Gaps = 6/268 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R++ + V+ V A +AGI+AM++     V  +          +NVL+S  +L VG  
Sbjct: 1   MKPSRIVILSVALVAAGLAGIVAMQISGAKQVIEKAETIIEKEPTVNVLVSSVNLPVGSR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + W  +P  NV D FI +   PNA+ EL G +VR+P+ +G+P+R EK+VD     
Sbjct: 61  LNDSSVHWTPWPTGNVIDSFITEAKNPNAITELSGAVVRLPLFQGEPVRPEKVVDSSTRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +SSLLP GKRA   +IS+S+  GG + PND VDV+MVR           VL+N+RV+AID
Sbjct: 121 MSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGDSGHFLTENVLNNVRVLAID 180

Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSS-EDSD 235
             I   E     +VG+TATLELTP QAK +  AQ +A +L+L LRS+AD   + +     
Sbjct: 181 QQIKEGEDGTSAVVGATATLELTPEQAKIITVAQQMADRLTLALRSVADAQENDTLSAGY 240

Query: 236 VWDVQEEGKEIQIIKAGVIVNKDGEGIS 263
           + +      EIQ+IK+G IV   G+G S
Sbjct: 241 LLNGGSGQPEIQVIKSGSIVK-AGQGAS 267


>gi|150398540|ref|YP_001329007.1| SAF domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150030055|gb|ABR62172.1| SAF domain protein [Sinorhizobium medicae WSM419]
          Length = 269

 Score =  194 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 103/266 (38%), Positives = 158/266 (59%), Gaps = 5/266 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R++ + V+   A +AG++AM+L      +  E + E     INVL++   L VG  
Sbjct: 1   MKPVRIIILAVAVGSAAMAGLLAMKLTRAPAARMAEPVIEQA-PTINVLVAGKSLPVGSR 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + W A+P++ + +G I +  +P+A+ +L G +VR+PI  G+P+R EK+ D  N  
Sbjct: 60  LGADSIHWKAWPKDGIAEGMITEETRPSAVDDLAGAVVRLPIFTGEPVRQEKIADASNRI 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +SSLLP GKRA   +I++++  GG I PND VDV+MVR           VLSN+RV+AID
Sbjct: 120 MSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDLYLTETVLSNVRVLAID 179

Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236
             I+  E   + +VG+TATLELTP Q+K +   Q +A ++SL LRS+AD     +  +D 
Sbjct: 180 QQIEEKEDGTKAVVGTTATLELTPDQSKVMTVTQQMADRISLALRSVADAQEPDTTAADH 239

Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEGI 262
               +    IQ+IK+G IV  DG  +
Sbjct: 240 LLNGDGQPSIQVIKSGSIVKGDGVAL 265


>gi|15887574|ref|NP_353255.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
 gi|15155111|gb|AAK86040.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
          Length = 268

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 109/268 (40%), Positives = 158/268 (58%), Gaps = 6/268 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R++ + V+ V A +AG++AM++     V  +          +NVLIS  +L VG  
Sbjct: 1   MKPSRIVILSVALVAAGLAGLVAMQISGAKQVIEKAETIIQKEPTVNVLISSVNLPVGSR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + W  +P+ NV D FI    +P+A+ EL G +VR+P+ +G+PIR EK+VD     
Sbjct: 61  LNDSSMRWTPWPQGNVVDSFITQAKRPDAITELAGTVVRLPLFEGEPIRPEKVVDSSTRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +SSLLP GKRA   +IS+S+  GG + PND VDV+MVR           VL+N+RV+AID
Sbjct: 121 MSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGENGNFLTENVLNNVRVLAID 180

Query: 181 HNIDSDER---VLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236
             I   E     +VG+TATLELTP QAK +  AQ +A +L+L LRS+AD   + +  +  
Sbjct: 181 QQIKEGEDGIAAVVGATATLELTPEQAKIITVAQQMADRLTLALRSVADAQENDTLSAGH 240

Query: 237 WDVQ-EEGKEIQIIKAGVIVNKDGEGIS 263
                    EIQ+IK+G IV   G+G S
Sbjct: 241 LLSGSSGQPEIQVIKSGSIVK-SGQGAS 267


>gi|239833238|ref|ZP_04681567.1| Flp pilus assembly protein CpaB [Ochrobactrum intermedium LMG 3301]
 gi|239825505|gb|EEQ97073.1| Flp pilus assembly protein CpaB [Ochrobactrum intermedium LMG 3301]
          Length = 279

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 94/267 (35%), Positives = 139/267 (52%), Gaps = 12/267 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ + A  AG IAM L +P              K  +VL++  +L VG  
Sbjct: 9   MKSARLLILGVAVLAAGGAGYIAMNLATPPPAPVVAAPEAPQIKLEDVLVATENLGVGAE 68

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T  +  W  +P E + +G+I    +P+A+ +L G  VR+    G+PIR  KL+  G   
Sbjct: 69  LTSQM-RWQPWPAEAISEGYITRASEPDAINQLSGATVRLQFFTGEPIRKAKLIGPGQSF 127

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNI 174
           +SS+LP G RA    I+  S+ GG I PND VDV+M R   +         T   VL N+
Sbjct: 128 MSSILPPGMRAVATQINAESSAGGFILPNDFVDVIMTRRKPDNGDKSLTPFTTETVLQNV 187

Query: 175 RVIAIDHNIDSDERVL---VGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230
           RV+AID  I  DE+     VG TATLE+TP QA+ +  AQ +A +L+L LRS  D+    
Sbjct: 188 RVLAIDQAIQEDEQGRKVMVGQTATLEVTPEQAEIITVAQQMADRLTLALRSTQDVEDRD 247

Query: 231 SEDSDVWDVQEEGK-EIQIIKAGVIVN 256
            + +D           +++IK+G +  
Sbjct: 248 IKQADYLVSSPTRSGTVKVIKSGSVTE 274


>gi|316933040|ref|YP_004108022.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris DX-1]
 gi|315600754|gb|ADU43289.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris DX-1]
          Length = 266

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 134/267 (50%), Gaps = 17/267 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + ++     VA  +A    +               + + VL++K D+ +G  
Sbjct: 7   MNTARIVVLTIAVGAGGVAAYLA---STAGPQPQAPAEPVARMQTVEVLVAKNDIPLGQA 63

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           V P  L+W  +P       FI    QPNA  +L G + R P + G+PIR +KLV     G
Sbjct: 64  VAPGDLQWQTWPSATASSHFIRRNDQPNATTDLAGSIARSPFIAGEPIREQKLVKANGSG 123

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSN 173
            ++++LP G RA + +IS  +  GG I PND VDV++ +        S  +    ++LSN
Sbjct: 124 FMAAILPSGMRAISTEISPETGAGGFILPNDRVDVILSKREKNSDRPSGEQIVSEIILSN 183

Query: 174 IRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +RV+A+D  I+    ++V+VG TATLEL P QA+ L  A+    L+L LRS+AD    S+
Sbjct: 184 VRVLAVDQTIEEKNGQKVVVGKTATLELKPEQAEYLARARQSGTLALALRSLADAGQPST 243

Query: 232 EDSDVWDVQEEGKEIQIIKAGVIVNKD 258
            ++D          + I++ GV     
Sbjct: 244 TENDAKRD-----SVNIVRYGVTTQTS 265


>gi|153008058|ref|YP_001369273.1| SAF domain-containing protein [Ochrobactrum anthropi ATCC 49188]
 gi|151559946|gb|ABS13444.1| SAF domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 271

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/267 (35%), Positives = 139/267 (52%), Gaps = 12/267 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ + A  AG IAM L +P              K  +VL++  +L VG  
Sbjct: 1   MKSARLLILGVAVLAAGGAGYIAMNLAAPPPAPVVVAPETPQMKLEDVLVATENLGVGAE 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T  +  W  +P E V DG+I    +P+A+ +L G  VR+    G+PIR  KL+  G   
Sbjct: 61  LTSQM-RWQPWPAEAVSDGYITRASEPDAINQLSGATVRLQFFTGEPIRKTKLIGPGQSF 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNI 174
           +SS+LP G RA    I+  S+ GG I PND VDV+M R   +         T   VL N+
Sbjct: 120 MSSILPPGMRAVATQINAESSAGGFILPNDFVDVIMTRRKPDNGDKSLTPFTTETVLQNV 179

Query: 175 RVIAIDHNIDSDERVL---VGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230
           RV+AID  I  DE+     VG TATLE+TP QA+ +  AQ +A +L+L LRS  D+    
Sbjct: 180 RVLAIDQAIQEDEQGRKVMVGQTATLEVTPEQAEIITVAQQMADRLTLALRSTQDVEDKD 239

Query: 231 SEDSDVWDVQEEGK-EIQIIKAGVIVN 256
            + +D           +++IK+G +  
Sbjct: 240 IKQADYLVSSPTRSGTVKVIKSGSVTE 266


>gi|115526291|ref|YP_783202.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisA53]
 gi|115520238|gb|ABJ08222.1| putative pilus assembly protein cpaB [Rhodopseudomonas palustris
           BisA53]
          Length = 268

 Score =  189 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 18/263 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + ++      A  +A    SP        +     K ++VL++K +LA+G +
Sbjct: 1   MNKARIVVLAIAVSAGGAAAYLASGADSPKPPPQVAQVPTAQLKTVDVLVAKTNLALGQL 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           V P+ ++W  +P ++    FI     PN    + G + R P + G+PIR  KLV     G
Sbjct: 61  VGPSDVQWQNWPADSANSNFIRRDQHPNFDTTVAGSIARSPFVAGEPIREVKLVRPNGSG 120

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-------VVLS 172
            ++++LP G RA + +IS  +  GG I PND VDV++ +         +        +L+
Sbjct: 121 FMAAILPSGMRAISTEISPETGAGGFILPNDRVDVILSKRERNSDSESSKENVTSVTILT 180

Query: 173 NIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           N+RV+AID        + V VG TATLEL P QA+ L  A+    LSL LRS+ D N  +
Sbjct: 181 NVRVLAIDQLPKEREGQNVAVGKTATLELLPEQAEQLARARQSGTLSLALRSMVDSNVVA 240

Query: 231 SEDSDVWDVQEEGKEIQIIKAGV 253
           +   D        K++ I K   
Sbjct: 241 TVTDD--------KQVTIYKGSE 255


>gi|222084468|ref|YP_002542997.1| pilus assembly protein [Agrobacterium radiobacter K84]
 gi|221721916|gb|ACM25072.1| pilus assembly protein [Agrobacterium radiobacter K84]
          Length = 270

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 102/267 (38%), Positives = 158/267 (59%), Gaps = 5/267 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R+M + V+ V A +AG++AM L    ++  +          +NVL++  +L VG  
Sbjct: 1   MKPARIMILAVAVVTAGLAGLLAMHLAGSRNIVQQVETVVEKEATVNVLVADANLPVGSR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + W+A+P+  V  G I    +P+A+++L+G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LNEKSIHWMAWPQSGVVKGLITQAERPDALKDLNGAVVRLPIFEGEPIREEKVADASSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR    +K     VLSN+R++A+D
Sbjct: 121 LSSLLPSGKRAVATEISVATGAGGFILPNDRVDVIMVRKGDTQKFVTETVLSNVRILAVD 180

Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236
             I+  +   + +VG+TATLELTP Q K L  AQ +A +L+L LRS+AD     +  +D 
Sbjct: 181 QQIEEKQDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLTLALRSVADAQQPDTTAADY 240

Query: 237 WDVQE-EGKEIQIIKAGVIVNKDGEGI 262
               +  G  +Q+IK+G I+       
Sbjct: 241 LLSGDNGGAVVQVIKSGAIIANGTAAA 267


>gi|299132282|ref|ZP_07025477.1| Flp pilus assembly protein CpaB [Afipia sp. 1NLS2]
 gi|298592419|gb|EFI52619.1| Flp pilus assembly protein CpaB [Afipia sp. 1NLS2]
          Length = 273

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 134/260 (51%), Gaps = 15/260 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + ++     VA  +A    S               +  +VL++K D+ +G  
Sbjct: 1   MNTARVVVLAIAVSAGGVAAFLASG--SDQKPAPRVAAPVPQLETTDVLVAKSDIPLGQT 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +T + ++W ++P       F+    + +A++++ G +VR P L G+PIR  KLV     G
Sbjct: 59  ITADDMKWQSWPAATASSSFVKKSERADAIKDMTGSIVRSPFLAGEPIRETKLVKANGSG 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----VRSLSERKPTVTVVLSNI 174
            ++++LP G RA + +IS  +  GG I PNDHVDV++      R  +    +  ++LS++
Sbjct: 119 FMAAILPSGMRAISTEISPETGAGGFILPNDHVDVLLSRRQKSREGNGESVSSEIILSDV 178

Query: 175 RVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           RV+AID  ++    ++V+VG TATLEL P QA+ L  ++    LSL LRS+ D N     
Sbjct: 179 RVLAIDQTVEEKNGQKVVVGKTATLELKPAQAETLARSRQSGTLSLALRSLVDANKPGKV 238

Query: 233 DSDVWDVQEEGKEIQIIKAG 252
           +        + K I + + G
Sbjct: 239 E-----DASDEKLITVYRGG 253


>gi|222147183|ref|YP_002548140.1| component of type IV pilus [Agrobacterium vitis S4]
 gi|221734173|gb|ACM35136.1| component of type IV pilus [Agrobacterium vitis S4]
          Length = 269

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 103/267 (38%), Positives = 157/267 (58%), Gaps = 6/267 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN-PAKFINVLISKGDLAVGM 59
           MK  R++ + V+   A +AG++AM L     V  ++            VLI+   L VG 
Sbjct: 1   MKPARILILFVAVAAAGLAGLLAMGLSGQKRVVVQQSEPVVTKEPTTKVLIAAASLPVGA 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +T   + W+ +P+ ++ DGF+ + ++P A+ +L G++VR+PI +G+PIR+EK+ D  + 
Sbjct: 61  RLTDKAMRWMDWPKTDLVDGFVTEENRPQALSDLAGLVVRLPIFEGEPIRIEKIADASSR 120

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            LS+LLP GKRA + +IS+++  GG I PND VDV+MVR           VLSN+RV+AI
Sbjct: 121 TLSALLPAGKRAISTEISVATGAGGFILPNDRVDVIMVRKGDNDNHLTETVLSNVRVLAI 180

Query: 180 DHNIDS---DERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235
           D  I+      R ++G+TATLELTP Q K L  AQ +A +LSL LRS+AD     +  + 
Sbjct: 181 DQQIEEKNDGTRSVIGTTATLELTPEQTKVLTVAQQMAERLSLALRSVADAQEQDNSSAS 240

Query: 236 VWDVQE-EGKEIQIIKAGVIVNKDGEG 261
                +  G ++Q+IK+G IV   G  
Sbjct: 241 YLLSGDSGGPQVQVIKSGQIVKSAGAA 267


>gi|304392385|ref|ZP_07374326.1| Flp pilus assembly protein CpaB [Ahrensia sp. R2A130]
 gi|303295489|gb|EFL89848.1| Flp pilus assembly protein CpaB [Ahrensia sp. R2A130]
          Length = 286

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/265 (31%), Positives = 132/265 (49%), Gaps = 12/265 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN---VLISKGDLAV 57
           MK  +L+ I V+ V +L AG + M +  P      +         I    VL++  D+  
Sbjct: 14  MKPVQLVLIAVALVASLGAGYLVMNMSEPPAQVVVQTDNGPAIPTIPTRLVLVAVADVPQ 73

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G  ++ N + +  +PE  V   F+     P A+++  G + R     G+PIR  K+V   
Sbjct: 74  GTTLSENNMRFEEWPETGVRPSFVTQKDAPEAIKDFSGAIARSSFFAGEPIRDAKIVRSD 133

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIR 175
           +G LS++LP GKRA  ++I+ SS+ GG I PNDHVDV+M R     +       +L NIR
Sbjct: 134 SGYLSAILPAGKRAVAIEITASSSAGGFILPNDHVDVIMARQQDGEQNVIITDTILQNIR 193

Query: 176 VIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAK--LSLVLRSIADLNPSSS 231
           V+A+D     +  ++  VG T TLELT  Q + + AAQ + +  L+L LRS+ D     +
Sbjct: 194 VLALDQLIEEEEGKKSTVGETVTLELTAEQVEIVAAAQQINRRGLTLALRSVEDAEIEGT 253

Query: 232 EDSDVWDVQEEGKE---IQIIKAGV 253
                     + K    ++II+ G 
Sbjct: 254 SAGRKLLSSGDRKSRGTVRIIRYGK 278


>gi|92116014|ref|YP_575743.1| Flp pilus assembly CpaB [Nitrobacter hamburgensis X14]
 gi|91798908|gb|ABE61283.1| Flp pilus assembly CpaB [Nitrobacter hamburgensis X14]
          Length = 260

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 134/262 (51%), Gaps = 19/262 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + ++     +A  +A         +  +       + ++VL++K D+ +G  
Sbjct: 1   MNTARIVVLTIAVGAGGLAAYLA-----SGSDKKPQPAQTAQLQTVDVLVAKSDIPLGQA 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           VT N + W A+P  +    FI    +P+A  +L G + R P + G+PIR  KLV     G
Sbjct: 56  VTANDVAWQAWPANSASSSFIRRDQRPDATTQLAGSIARSPFIAGEPIRELKLVSAKGSG 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSN 173
            ++++LP G RA + +IS  +  GG I PND VDV++ +        +        +LSN
Sbjct: 116 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSQRDKNPDHPNANSVNSETILSN 175

Query: 174 IRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +RV+A+D  I+    ++V+VG TATLEL P QA+ L  ++ +  LSL LRS+AD N   S
Sbjct: 176 VRVLAVDQTIEEKNGQKVVVGKTATLELKPEQAEMLARSRQMGTLSLALRSLADANAPES 235

Query: 232 EDSDVWDVQEEGKEIQIIKAGV 253
              D          I I++ GV
Sbjct: 236 STDDQRRD-----SINIVRYGV 252


>gi|254473714|ref|ZP_05087109.1| Flp pilus assembly protein CpaB [Pseudovibrio sp. JE062]
 gi|211957100|gb|EEA92305.1| Flp pilus assembly protein CpaB [Pseudovibrio sp. JE062]
          Length = 259

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 125/258 (48%), Gaps = 12/258 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +RL+ ++++     +A  +              V+ E     + +L++  DL VG  
Sbjct: 1   MKASRLLVLIIALSAGGLAAWL-NLSSGSREPAQTIVVQEQEIPSLEILVAAQDLKVGTA 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   L W  +PEE+V DG I     P A +E  G +++  +  G+PIR E+L++   G 
Sbjct: 60  LTEGDLSWAKWPEESVSDGVILRSSSPQADEEFLGQIIKAAMFSGEPIRAERLINTDKGF 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIA 178
           L+++LPKGKRA  + +   S  GG I P D VDV++       +       +L NI+V+A
Sbjct: 120 LAAILPKGKRAVAVPVDAVSTAGGFILPGDKVDVLISMQAKKRDEGFISETLLENIKVLA 179

Query: 179 IDHNIDSDERV---LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           ID    S+          TATLEL P +A+ +  A  +  LSL LRS AD      +   
Sbjct: 180 IDTTTASENSEKAMSPDQTATLELFPHEAETIARATQMGTLSLSLRSAADSK----DGVK 235

Query: 236 VWDVQEEGKEIQIIKAGV 253
                + G  ++ +K G+
Sbjct: 236 QPPRVKGG--VKFVKYGI 251


>gi|328545280|ref|YP_004305389.1| Flp pilus assembly CpaB [polymorphum gilvum SL003B-26A1]
 gi|326415022|gb|ADZ72085.1| Flp pilus assembly CpaB [Polymorphum gilvum SL003B-26A1]
          Length = 258

 Score =  182 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 133/264 (50%), Gaps = 12/264 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RLM + V+    L+A  + M   +P   QT E   E   + + VL++  D+ +G  
Sbjct: 1   MKYARLMILGVAMGAGLLAARMVMTTKAPEVPQTVE-RVEPEKQTVAVLVATRDIRLGDH 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + W  +PE  V  G I   +QP+A + + G + + PI  G+PIR ++L+    G 
Sbjct: 60  LAASDISWAEWPENVVPQGAITRQNQPDAEELMVGQIAKAPIYSGEPIRGQRLIRTDRGF 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVIA 178
           ++++LPKGKRA  + +   +  GG I P D VDV++ RS    +       +L N+RV+A
Sbjct: 120 MAAILPKGKRAIAVGVEAETTAGGFILPGDKVDVILTRSSDSNRSNARSETILENVRVLA 179

Query: 179 IDHNIDSDERV---LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           ID     ++         TATLEL+  QA+ +  AQ +  +SL LRS  D    S ++ D
Sbjct: 180 IDTTTAGEQDEKSLSPDRTATLELSLEQAEVVAQAQQIGTISLALRSAQD----SGDEMD 235

Query: 236 VWDVQEEGKEIQIIKAGVIVNKDG 259
               ++ G  +  +K GV      
Sbjct: 236 GPISRKGG--VSFVKYGVSSQGST 257


>gi|85713504|ref|ZP_01044494.1| Flp pilus assembly CpaB [Nitrobacter sp. Nb-311A]
 gi|85699408|gb|EAQ37275.1| Flp pilus assembly CpaB [Nitrobacter sp. Nb-311A]
          Length = 260

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 135/262 (51%), Gaps = 19/262 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + ++     +A  +A         +  ++        ++VL++K D+ +G  
Sbjct: 1   MNTARIVVLTIAVGAGGLAAYLA-----SGSDKKPQIAQTVQLPTVDVLVAKSDIQLGQT 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           VT N + W  +P ++  + FI    +P+A  +L G + R P + G+PIR  KLV     G
Sbjct: 56  VTANDVAWQTWPADSASNSFIRRDRRPDATTQLAGSIARSPFIAGEPIREPKLVSAKGSG 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSN 173
            ++++LP G RA + +IS  +  GG I PND VDV++ R        S        +LSN
Sbjct: 116 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSRRDRNADHPSGDSVNSETILSN 175

Query: 174 IRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +RV+A+D  I+    ++V+VG TATLEL P QA+ L  ++ +  LSL LRS+AD N   S
Sbjct: 176 VRVLAVDQTIEEKNGQKVVVGRTATLELKPEQAETLARSRQMGTLSLALRSLADANAPES 235

Query: 232 EDSDVWDVQEEGKEIQIIKAGV 253
              D          I +++ GV
Sbjct: 236 NIDD-----RRRDSISVVRYGV 252


>gi|75674500|ref|YP_316921.1| Flp pilus assembly CpaB [Nitrobacter winogradskyi Nb-255]
 gi|74419370|gb|ABA03569.1| Flp pilus assembly CpaB [Nitrobacter winogradskyi Nb-255]
          Length = 275

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 135/267 (50%), Gaps = 19/267 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + ++     +A  +A         +  + +     + ++VL++K D+ +G  
Sbjct: 16  MNTARIVVLTIAVGAGGLAAYLA-----SGSDKETQPVQTEQLRTVDVLVAKSDIPLGQA 70

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           VT N + W  +P ++    FI    +P+A  +L G + R P + G+PIR  KLV     G
Sbjct: 71  VTANDVAWQTWPADSASHSFIRRDQRPDATTQLAGSIARSPFIAGEPIRELKLVSAKGSG 130

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------LSERKPTVTVVLSN 173
            ++++LP G RA + +IS  +  GG I PND VDV++ +        S        VL N
Sbjct: 131 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSKREKNADHASGDSVNSETVLGN 190

Query: 174 IRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +RV+AID  I+    ++V+VG TATLEL P QA+ L  ++ +  LSL LRS+AD N    
Sbjct: 191 VRVLAIDQTIEEKNGQKVVVGRTATLELKPEQAETLARSRQMGTLSLALRSLADANAPEG 250

Query: 232 EDSDVWDVQEEGKEIQIIKAGVIVNKD 258
           + +D          I +++ GV     
Sbjct: 251 DIND-----RRRDSINVVRYGVPTQTS 272


>gi|27375778|ref|NP_767307.1| CtpC protein [Bradyrhizobium japonicum USDA 110]
 gi|27348916|dbj|BAC45932.1| CtpC protein [Bradyrhizobium japonicum USDA 110]
          Length = 270

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 132/270 (48%), Gaps = 18/270 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ +V++     VA  +A       +     +        + VL++K D+ +G  
Sbjct: 1   MNTARIVVLVIALGAGGVAAYLASGY---DNKPAPALPVAEKLPTVEVLVAKNDIQLGQA 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           V P  L+W ++P       FI    +P A  ++ G + RVP+++G+PIR +KLV     G
Sbjct: 58  VKPEDLQWQSWPAATASGAFIRRDSRPEAQTQIAGSIARVPLMQGEPIREQKLVRAEGSG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS----------LSERKPTVTV 169
            ++++LP G RA + D++  ++ GG I PND VD+V+ R                    V
Sbjct: 118 FMAAILPSGMRAVSTDVTAETSAGGFILPNDRVDIVLTRRLKNPDVNGPTAGNDLILSEV 177

Query: 170 VLSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           +L+NIRV+AID        +  +VG T TLEL P Q   L AA+    L L LRSI D N
Sbjct: 178 ILTNIRVLAIDQAPKEKDGQNAVVGKTVTLELKPDQVATLTAARQGGTLQLALRSIVDAN 237

Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
            +     D+   +  G  + +I+ GV V +
Sbjct: 238 ATELTAEDLAIKRSGG--VNVIRYGVQVRQ 265


>gi|90425196|ref|YP_533566.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18]
 gi|90107210|gb|ABD89247.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18]
          Length = 265

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 137/270 (50%), Gaps = 16/270 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + ++     VA  +A    S    Q            ++VL++K D+ +G  
Sbjct: 1   MNTARIVVLTIAVGAGGVAAYLA----SGADQQPPPAAPVAQLPTVDVLVAKSDIPLGQA 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +TP  ++W  +P     + FI    +P+A  ++ G + R   + G+PIR  KLV     G
Sbjct: 57  LTPGDVQWQVWPAATASEMFIRRNVRPDATTQIVGSIARSAFIAGEPIRDLKLVKANGSG 116

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-------SLSERKPTVTVVLS 172
            ++++LP G RA + +IS  +  GG I PND VDV++ +         S       ++LS
Sbjct: 117 FMAAILPSGMRAVSTEISPETGAGGFILPNDRVDVILSKREKNPDARASGDGVNSEIILS 176

Query: 173 NIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           NIRV+AID  I+    ++V+VG TATLEL P Q++ L  A+    LSL LRS+AD N + 
Sbjct: 177 NIRVLAIDQTIEEKNGQKVVVGKTATLELKPEQSEGLARARQSGTLSLALRSLADANSAV 236

Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVNKDGE 260
           ++  D  D   +   I +++ GV      +
Sbjct: 237 ADTPD--DRSAKRDSINVVRFGVSTPTTTQ 264


>gi|118589702|ref|ZP_01547107.1| Flp pilus assembly CpaB [Stappia aggregata IAM 12614]
 gi|118437788|gb|EAV44424.1| Flp pilus assembly CpaB [Stappia aggregata IAM 12614]
          Length = 256

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 126/263 (47%), Gaps = 10/263 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+ R+  + ++    ++A  + M   +                   VL+++ D+ +G  
Sbjct: 1   MKIARIFVLAIAVAAGIIAFRMVMMSGNKPAEPQIVQAPVAEQTKTQVLVAQRDIPLGAK 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           ++P+ + W  +PE+ V  G +     P A +E  G + R PI  G+P+R E+L++   G 
Sbjct: 61  LSPDDMSWANWPEDAVPFGAVTKEAAPLANEEYAGRIARAPIFAGEPVRPERLINTDKGF 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           ++++LPKGKRA  + +   ++ GG I P D VDV++ R  S+       +L NIRV+AID
Sbjct: 121 MAAILPKGKRAIAVSVEEETSAGGFILPGDKVDVILTRK-SDTSAVSETILENIRVLAID 179

Query: 181 HNIDSDERV---LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
                ++         TATLEL+  Q++ +  +Q +  ++L LRS  D         D  
Sbjct: 180 STTAGEQEQKNLSPKRTATLELSLPQSEIIAQSQQIGTIALALRSAQDSAD------DAE 233

Query: 238 DVQEEGKEIQIIKAGVIVNKDGE 260
           D     + +  +K GV      +
Sbjct: 234 DDGGRRRGVSYVKYGVTSQAGAQ 256


>gi|148256956|ref|YP_001241541.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1]
 gi|146409129|gb|ABQ37635.1| Putative pilus assembly protein cpaB [Bradyrhizobium sp. BTAi1]
          Length = 266

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 82/270 (30%), Positives = 133/270 (49%), Gaps = 15/270 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + ++     VA  +     +    Q   V        + VL++K D+ +G  
Sbjct: 1   MMTARIVVLTIALGAGGVAAYLV---STSESQQPVAVAPVAQLPTVEVLVAKNDIGLGQA 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + P  L W  +PE    + FI    +P A  +L G + R P + G+PIR +KLV     G
Sbjct: 58  IKPGDLVWQTWPE-AASNIFIRRGDRPEAANQLVGTIARAPFVIGEPIREQKLVKSDGSG 116

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVLS 172
            ++++LP G RA + +IS  +  GG I PND VDV++ +              +  ++LS
Sbjct: 117 FMAAILPAGMRAISTEISPETGAGGFILPNDRVDVILSKRDKNPDKPGGPDYVSSEIILS 176

Query: 173 NIRVIAIDHN--IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           N+RV+AID        +  +VG T TLEL P QA+ L  A+    L+L LRSIAD+N + 
Sbjct: 177 NVRVLAIDQAPKEKEGQNTVVGKTVTLELKPEQAETLARARQSGSLALALRSIADVNAAD 236

Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVNKDGE 260
              ++    +  G  I+II+ G+  +   +
Sbjct: 237 GNKNETQMARR-GNAIEIIRYGITSSLTAQ 265


>gi|188581659|ref|YP_001925104.1| Flp pilus assembly protein CpaB [Methylobacterium populi BJ001]
 gi|179345157|gb|ACB80569.1| Flp pilus assembly protein CpaB [Methylobacterium populi BJ001]
          Length = 260

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/257 (30%), Positives = 130/257 (50%), Gaps = 7/257 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL  + ++ V    A ++     +P      +     P     VL++  +L +G  
Sbjct: 1   MKPARLAVLGIALVAGCGAALLMGGEKAPEPAPVVKAEPPPPIPMSEVLVAAAELPMGQT 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           + P  L W+ +PE+ +  G ID    P  +++  G ++R      +PIR E+L+  G+G 
Sbjct: 61  LKPEDLRWIPWPEQAIAPGLIDRRAAPKGLEDAVGAIIRTGFSANEPIRPERLIKAGSGF 120

Query: 121 LSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
           +S++LP G RA  +      SS+ GG I PNDHVD++   S          +L+++RV+A
Sbjct: 121 MSAILPPGMRAVAITTDTRGSSSAGGFILPNDHVDIIKT-SNEGSDQFAETLLTDVRVLA 179

Query: 179 IDHNIDSDERVLV--GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           +   +       V    TAT+ LTP QA+ +  AQ V +LSLVLRSI D    ++  S+ 
Sbjct: 180 VGQIVQDKNGANVVTAETATVALTPAQAETVTLAQKVGQLSLVLRSIQDSA-RTAALSEE 238

Query: 237 WDVQEEGKEIQIIKAGV 253
            D+  EG  + +++ GV
Sbjct: 239 ADLPPEGP-MTVVRFGV 254


>gi|146342077|ref|YP_001207125.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS278]
 gi|146194883|emb|CAL78908.1| Putative pilus assembly protein cpaB [Bradyrhizobium sp. ORS278]
          Length = 269

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/272 (31%), Positives = 133/272 (48%), Gaps = 16/272 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + ++     VA  +     S    Q   V        + VL++K D+ +G  
Sbjct: 1   MMTARIVVLTIALGAGGVAAYLV---SSSESQQPAPVAPVAQLPTVEVLVAKADIGLGQA 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + P  L W  +PE    + FI    +P A  +L G + R P + G+PIR +KLV     G
Sbjct: 58  IKPGDLIWQTWPE-AASNIFIRRGDRPEAATQLVGSIARAPFVIGEPIREQKLVKSDGSG 116

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-------RKPTVTVVLS 172
            ++++LP G RA + +IS  +  GG I PND VDV++ R                 ++LS
Sbjct: 117 FMAAILPAGMRAISTEISPETGAGGFILPNDRVDVILSRREKNPDKPAAADSIVSEIILS 176

Query: 173 NIRVIAIDHN--IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           N+RV+AID        +  +VG T TLEL P QA+ L  A+    L+L LRSIAD+N   
Sbjct: 177 NVRVLAIDQAPKEKEGQNTVVGKTVTLELKPEQAETLSRARQAGTLALALRSIADINAPD 236

Query: 231 SE--DSDVWDVQEEGKEIQIIKAGVIVNKDGE 260
           +   +++   +   G  I+II+ GV  +   +
Sbjct: 237 TGKTETEQQQMARRGNAIEIIRYGVTSSLTAQ 268


>gi|91977984|ref|YP_570643.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB5]
 gi|91684440|gb|ABE40742.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB5]
          Length = 266

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 128/269 (47%), Gaps = 17/269 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + ++     VA  +A      +               + VL++K D+ +G  
Sbjct: 1   MNTARIVVLTIAIGAGAVAAYLASG--GGNQEAAGPAAPVAELPTVEVLVAKSDIPLGQP 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           V P  ++W  +P       FI    +P A  +L G + R   + G+PIR +KLV     G
Sbjct: 59  VGPGDMQWQTWPAATASANFIRRNERPEATTQLAGSIARSQFIAGEPIREQKLVKANGSG 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--------ERKPTVTVVL 171
            ++++LP G RA + +IS  +  GG I PND VDV++ +                   +L
Sbjct: 119 FMAAILPTGMRAVSTEISPETGAGGFILPNDRVDVILSKRDKNPDRAGSGGDVVNSETIL 178

Query: 172 SNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           SN+RV+AID  I+    ++V+VG TATLEL P QA+ L  A+    LSL LRS+ D N  
Sbjct: 179 SNVRVLAIDQAIEEKNGQKVVVGKTATLELKPEQAEFLARARQSGTLSLALRSLVDANAP 238

Query: 230 SSEDSDVWDVQEEGKEIQIIKAGVIVNKD 258
           ++ +     +  +   + +++ GV     
Sbjct: 239 TATEE----IGGKRDSVNVVRYGVSTPTT 263


>gi|170740622|ref|YP_001769277.1| Flp pilus assembly protein CpaB [Methylobacterium sp. 4-46]
 gi|168194896|gb|ACA16843.1| Flp pilus assembly protein CpaB [Methylobacterium sp. 4-46]
          Length = 268

 Score =  176 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 92/265 (34%), Positives = 132/265 (49%), Gaps = 16/265 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ +R + I V+ V  L A  +      P       V        ++VL++  DL +G  
Sbjct: 1   MRSSRALLIGVAAVTGLAAFYMMSGSPPPPPPPPVVVQAPAVPDTVDVLVAAADLPMGQT 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + P  L W A+P+ +V DGFI     P A+++  G  VR P L G+PIR EKL+     G
Sbjct: 61  LKPADLRWQAWPKGSVNDGFIQRGQNPRALEDTVGSFVRGPFLGGEPIRREKLIRANGSG 120

Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVV 170
            LS++LP G RA  + I    S+  GG I PND VDV+      E              +
Sbjct: 121 FLSAILPSGMRAVAISIDARGSNTAGGFILPNDRVDVLRTYRDDEASRATTSDVQVSETI 180

Query: 171 LSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           L N+RV+A+   +     ERV+ G TATLELTP Q + +  AQ V +LSL LRSIAD   
Sbjct: 181 LQNVRVLAVGQTVQERNGERVVTGDTATLELTPAQTEQITLAQKVGQLSLALRSIADAGI 240

Query: 229 SSSEDSDVWDVQEEGKEIQIIKAGV 253
           S  E+ +      +   + +++ GV
Sbjct: 241 SQPENPEPQ----KESALTVVRYGV 261


>gi|218710407|ref|YP_002418028.1| Flp pilus assembly protein CpaB [Vibrio splendidus LGP32]
 gi|218323426|emb|CAV19603.1| Flp pilus assembly protein CpaB [Vibrio splendidus LGP32]
          Length = 279

 Score =  176 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 109/254 (42%), Gaps = 18/254 (7%)

Query: 1   MKLTRLMGI-VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M  +++  + ++S VF L A   A + +     Q +  +     +   V+++  ++  G 
Sbjct: 31  MNKSQVFLLFLLSVVFGLAAVFFAKQWM---EDQVQPTVEVEAVERHPVVVASQEIEAGT 87

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           ++    L       + + +    D        EL G +V   I  G+ +   +    G G
Sbjct: 88  IIEEQFLATKLMEVDWINENNFSDAS------ELVGKVVANTIYAGEVLHKMRFTIPGEG 141

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
             L++L+P+ KRA T+ +     V G + P + VD++   S S+       VL +I+V+A
Sbjct: 142 STLAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILSTVSYSKNSAATRTVLKDIKVLA 201

Query: 179 IDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           +D     ++   ++    TLE++P  A+ L+ A+S   + L LR+  ++         V 
Sbjct: 202 VDQTAKTNENSPIIVRAVTLEVSPKDAEKLLTAKSKGSIQLTLRNPHEVEK------KVV 255

Query: 238 DVQEEGKEIQIIKA 251
                   + IIK 
Sbjct: 256 RRYVPKPSVTIIKG 269


>gi|27376551|ref|NP_768080.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 gi|27349692|dbj|BAC46705.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
          Length = 269

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 127/264 (48%), Gaps = 17/264 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + V+     VA  +A       +              ++VL++K D+ +G  
Sbjct: 4   MNRARIVVLTVAICAGGVAAYLA---SGSDNSAPPPAAPVAQLPTVDVLVAKNDIGLGQT 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           V P  ++W  +P       FI    +P  + ++ G + R P ++G+PIR +KLV     G
Sbjct: 61  VKPEDVQWQTWPAATASATFIRRNERPEGVTQVTGSIARAPFIQGEPIRDQKLVKAEGSG 120

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--------TVTVVL 171
            ++++LP G RA + +IS  +  GG I PND VDV++ R L    P        T  ++L
Sbjct: 121 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVLLTRRLKNPDPSNGAPDIVTSEIIL 180

Query: 172 SNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           +NIRV+AID        +  +VG T TLEL P Q   L AA+    LSL LRSI D    
Sbjct: 181 ANIRVLAIDQAPKEKDGQNTVVGKTVTLELNPTQTATLSAARQSGTLSLALRSIVD---V 237

Query: 230 SSEDSDVWDVQEEGKEIQIIKAGV 253
              +  + D  +    + II+ G+
Sbjct: 238 KMSEITLDDSAQRRDGVSIIRYGI 261


>gi|260431083|ref|ZP_05785054.1| Flp pilus assembly protein CpaB [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414911|gb|EEX08170.1| Flp pilus assembly protein CpaB [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 293

 Score =  175 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 108/263 (41%), Gaps = 17/263 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP----------AKFINVLI 50
           M+    + ++V    A  A  +A   ++ +                         + VL+
Sbjct: 1   MRAVFGLVLIVGIALAGGAVYLARNYITEYQNALARERQAAQEALASAKVDVVPTVGVLV 60

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +   L  G  +T   +  V +PE  V +G   ++         +   V   + K + I  
Sbjct: 61  ANRPLKYGERLTEEDIRVVDWPENAVPEGAFTEMAALFPETGANERFVLRAMEKDEAIME 120

Query: 111 EKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RK 164
            K+   G   GL+S L KG RA  + + ++S V G ++P D VDV    SLS      R 
Sbjct: 121 VKVTKPGELAGLTSRLEKGMRAFAISVDVASGVSGFLRPGDVVDVYWTGSLSGAVEGARG 180

Query: 165 PTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
               ++ +NI +IA+D +  SD     +  T T+  TP Q  AL  AQ+  +LSL L  +
Sbjct: 181 EITRLIQTNIELIAVDQSAGSDVTGTTIARTVTVAATPEQVAALAQAQNTGRLSLALVGV 240

Query: 224 ADLNPSSSEDSDVWDVQEEGKEI 246
            D   +S+ + D   +    + +
Sbjct: 241 HDETVASAIEVDQRKLLGIKEAV 263


>gi|110679398|ref|YP_682405.1| pilus assembly domain-containing protein [Roseobacter denitrificans
           OCh 114]
 gi|109455514|gb|ABG31719.1| pilus assembly domain protein [Roseobacter denitrificans OCh 114]
          Length = 282

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 6/247 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT--ENPAKFINVLISKGDLAVG 58
           M++   M ++     A  A  +A   +  +  +                V ++   L  G
Sbjct: 1   MRVIFGMVLLAGVALAGGAVYMAKGYIGQYQAELARAQQMHSAIVPTQQVFVATRHLRYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             + P  +  V +P   +  G   D+         +  L+  P+   + +   K+ + G 
Sbjct: 61  DTLKPEDVRAVNWPVNAIPQGVFTDIAALFPEGTDEPRLIIRPMEPSEAVLAVKITEPGE 120

Query: 119 G-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---SLSERKPTVTVVLSNI 174
             GL++ L KG RA  + + ++S V G ++P D VDV       + + R+    ++ + +
Sbjct: 121 DIGLTTRLEKGMRAFAIRVDVASGVSGFLRPGDKVDVYWTGGVQTGNGREDVTKLIQTAV 180

Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           R+IA+D   D      +  T T+  TP Q  AL  AQS   LSL L  + D         
Sbjct: 181 RLIAVDQIDDQMNGARIARTVTVAATPEQVAALAQAQSTGNLSLSLVGVGDDEELDEIKV 240

Query: 235 DVWDVQE 241
           +   +  
Sbjct: 241 NQVSLLG 247


>gi|86748908|ref|YP_485404.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris HaA2]
 gi|86571936|gb|ABD06493.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris HaA2]
          Length = 265

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/269 (30%), Positives = 133/269 (49%), Gaps = 16/269 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ +V++     VA  +A  +                   + VL++K D+ +G  
Sbjct: 1   MNTARIVVLVIAVGAGAVAAYLASGI--GGQETAGPTAPVAQLATVEVLVAKSDIPLGQP 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           V P+ ++W  +P       FI    +P+A  +L G + R P + G+PIR +KLV     G
Sbjct: 59  VGPSDVQWQTWPAATASSNFILRSERPDASVQLAGSIARSPFIAGEPIREQKLVKSNGSG 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-------ERKPTVTVVLS 172
            ++++LP G RA + +IS  +  GG I PND VDV++ +                 ++LS
Sbjct: 119 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSKRDQNPDRVKGGDVVNSEIILS 178

Query: 173 NIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           NIR++AID  ++    ++V+VG TATLEL P QA+ L  A+    LSL LRS+AD N   
Sbjct: 179 NIRILAIDQTVEEKNGQKVVVGKTATLELKPDQAEFLARARQSGTLSLALRSLADANAP- 237

Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259
              +   ++  +   I +I+ GV      
Sbjct: 238 ---ARTEEIGGKRDSINVIRFGVSTQTTT 263


>gi|220922778|ref|YP_002498080.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
 gi|219947385|gb|ACL57777.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
          Length = 267

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 90/265 (33%), Positives = 134/265 (50%), Gaps = 17/265 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R + I ++ V  L A  + M    P             A  ++VL++  DL +G +
Sbjct: 1   MKSSRALLIGIAAVTGLAAFYM-MSGSPPPPPPVVAPPPPMVADTVDVLVAAADLPMGQI 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + P  L W A+P+ ++ DGF+      NA+++  G  VR P L G+PIR EKL+     G
Sbjct: 60  LKPGDLRWQAWPKTSLNDGFLQREQNANALEDTLGSFVRSPFLGGEPIRREKLIKANGSG 119

Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSE-------RKPTVTVV 170
            LS++LP G RA  + I    S+  GG I PND VDV+      E              +
Sbjct: 120 FLSAILPSGMRAVAISIDARGSNTAGGFILPNDRVDVLRTHRDEEAARATKSDVQVTETI 179

Query: 171 LSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           L N+RV+A+   +     ERV+ G TATLELTP QA+ +  AQ V +LSL LRS++D   
Sbjct: 180 LKNVRVLAVGQTVQERNGERVVTGDTATLELTPAQAEQITLAQKVGQLSLALRSLSDAGQ 239

Query: 229 SSSEDSDVWDVQEEGKEIQIIKAGV 253
              E  +     E+   + +++ GV
Sbjct: 240 VQPESPET----EKEPALTVVRYGV 260


>gi|307943144|ref|ZP_07658489.1| Flp pilus assembly protein CpaB [Roseibium sp. TrichSKD4]
 gi|307773940|gb|EFO33156.1| Flp pilus assembly protein CpaB [Roseibium sp. TrichSKD4]
          Length = 256

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 119/264 (45%), Gaps = 12/264 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL  + V+    L+A  +     S    +    +T    +   VL++  D+ +G  
Sbjct: 1   MKYARLAILGVAVGAGLLAARLVS--TSAPEPEPVAEVTAPTIEKTEVLVASSDITLGSK 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  +   W ++P E +  G +     P AM+ L G + R PI  G+PIR E+L+    G 
Sbjct: 59  LGGSDFTWASWPTEALPAGVLTKDDDPEAMERLVGQVTRTPIFSGEPIREERLIRTDKGF 118

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-SLSERKPTVTVVLSNIRVIAI 179
           ++++LPKG RA  + +   +  GG I P D VDV++ + S          +L N+RV+AI
Sbjct: 119 MAAILPKGMRAIAVSVEAETTAGGFILPGDKVDVILTKASGETGSAVSNTILENVRVLAI 178

Query: 180 DHNIDSDERV---LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           D     D+         TATLEL   Q++ +  AQ V  +SL LRS  D         + 
Sbjct: 179 DAVTAGDQDEKNVSPDRTATLELNLPQSEIISQAQQVGTISLALRSAQDSAD------NA 232

Query: 237 WDVQEEGKEIQIIKAGVIVNKDGE 260
                  + +  +K G+      +
Sbjct: 233 EQTVRRKRAVNFVKYGLTSQAASQ 256


>gi|56697918|ref|YP_168289.1| CpaB family protein [Ruegeria pomeroyi DSS-3]
 gi|56679655|gb|AAV96321.1| CpaB family protein [Ruegeria pomeroyi DSS-3]
          Length = 305

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 104/255 (40%), Gaps = 12/255 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A ++A   +S +      E            V ++   L  G
Sbjct: 18  MRAVFGLVLIVGIALAGGAVMMARNYISAYQNELARERQARAQIVPTKTVYVASRPLRYG 77

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117
             +T   +  V +PE  + +G   D       ++ +   V   + K + I   K+     
Sbjct: 78  ERLTKEDVRAVNWPENAIPEGTFLDAAMLFPERQEENRYVLRAMEKDEAIMAIKVTKPGE 137

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTV 169
           + GL+S L +G RA  + + ++S V G ++P D VDV     LS         +     +
Sbjct: 138 DAGLTSQLARGMRAFAIKVDVTSGVSGFLRPGDRVDVYWTGGLSGATGPLEGMQGEITRL 197

Query: 170 VLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           + +NI+++AID     D     +  T T+   P Q  +L  AQ+  +L+L L    D   
Sbjct: 198 IQTNIQIVAIDQISGGDVTGANIARTVTVAALPQQVASLAQAQTTGRLTLALVGADDDTI 257

Query: 229 SSSEDSDVWDVQEEG 243
           +++ + D   +   G
Sbjct: 258 AAAVEVDQRMLLGLG 272


>gi|146338124|ref|YP_001203172.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS278]
 gi|146190930|emb|CAL74935.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. ORS278]
          Length = 248

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 13/250 (5%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           + A         Q +          ++VL++K D+ +G  + P +L+W ++P       F
Sbjct: 1   MAAYLASGSDDRQAQVAAPAPQVPTVDVLVAKADIGLGQSIKPELLQWQSWPASTASSSF 60

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISIS 139
           I    +P    E+ G + R P + G+PIR +KLV     G ++++LP G RA + +IS  
Sbjct: 61  IRRNERPEGQNEVTGTIARAPFIAGEPIREQKLVKSDGSGFMAAILPAGMRAVSTEISPE 120

Query: 140 SAVGGMIKPNDHVDVVMVRSLS-------ERKPTVTVVLSNIRVIAIDHNIDSDER--VL 190
           +  GG I PND VDV++ +              +  ++L+NIRV+AID      +    +
Sbjct: 121 TGAGGFILPNDRVDVILSKRERNPDQPNAGDVVSSEIILANIRVLAIDQAPKEKDGQTTV 180

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
           VG T TLEL P QA+ L  A+    LSL LRSIAD    +  +    D +  G  + +++
Sbjct: 181 VGKTVTLELKPEQAETLARARQTGTLSLALRSIAD---VNMAEQRSDDNRRRGDSVAVVR 237

Query: 251 AGVIVNKDGE 260
            G+      +
Sbjct: 238 FGIPSTMTTQ 247


>gi|254502627|ref|ZP_05114778.1| Flp pilus assembly protein CpaB [Labrenzia alexandrii DFL-11]
 gi|222438698|gb|EEE45377.1| Flp pilus assembly protein CpaB [Labrenzia alexandrii DFL-11]
          Length = 256

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 126/258 (48%), Gaps = 12/258 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R++ + ++    ++A  + M +      Q              VL +  D+ +G  
Sbjct: 3   MKFARILVLAIAVAAGVLAFRMVM-MSGGSSDQASNAPVPLEQAKGQVLTAATDILLGAK 61

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   + W  +PEE V  G +     P+A +EL G + + PI KG+PIR E+L++   G 
Sbjct: 62  LTAEDMVWTDWPEEAVPIGAVTKQVNPSASEELMGQIAKTPIFKGEPIRPERLINTDKGF 121

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +S++LPKGKRA  + +   +  GG I P D VDV++ R   +       +L NIRV+AID
Sbjct: 122 MSAILPKGKRAIAVSVEAETTAGGFILPGDKVDVILTRRTDDT-AISETILENIRVLAID 180

Query: 181 HNIDSDERV---LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
                ++         TATLELT  Q++ +  +Q V  ++L LRS  D        +D  
Sbjct: 181 TTTAGEQDQKNLSPQRTATLELTLGQSEVVAQSQQVGAIALALRSAQDS-------ADDA 233

Query: 238 DVQEEGKEIQIIKAGVIV 255
           +  E  + + ++K G+  
Sbjct: 234 EPTETRRGVNLVKYGITS 251


>gi|209551758|ref|YP_002283675.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537514|gb|ACI57449.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 271

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 110/267 (41%), Positives = 158/267 (59%), Gaps = 6/267 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ V A +AG +AM++     V T+          +N+L+S  +LAVG  
Sbjct: 1   MKPARLIILAVAVVAAGLAGFLAMQMAGNGGVVTQVQSVIEKEPTVNILVSSANLAVGER 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + W+ +P+  V  G I +  +P+A+++L G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LDDKSVHWMPWPQGGVVPGLITEADKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSNSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR  +E  K     VLSN+RV+AI
Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180

Query: 180 DHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235
           D  I   D   + +VG+TATLELTP Q K L  AQ +A +LSL LRS+AD     +  +D
Sbjct: 181 DQQIQEKDDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240

Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDGEG 261
                + G   IQ+IK+G IV      
Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDASAA 267


>gi|163757626|ref|ZP_02164715.1| pilus assembly protein [Hoeflea phototrophica DFL-43]
 gi|162285128|gb|EDQ35410.1| pilus assembly protein [Hoeflea phototrophica DFL-43]
          Length = 269

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 106/264 (40%), Positives = 158/264 (59%), Gaps = 8/264 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVG 58
           MK  R++ + V+ + A +AG +AM L +P     E   T        ++VL+    L VG
Sbjct: 1   MKPARVVIMAVAVLAAGLAGYLAMNLTAPTVQVNEISATPVIEKMPTLDVLVVSASLPVG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +    +EW  +PE+ V +G I    +P+A+ EL G +VR+P+  G+P+R EK+VD  +
Sbjct: 61  ARLNEETMEWKGWPEDAVTEGLIRRESRPDAITELTGSIVRLPLFTGEPLRPEKIVDSSS 120

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVTVVLSNIRVI 177
             +SSLLP GKRA   +IS++++ GG I PND VDV+MVR    +      V+LSNIRV+
Sbjct: 121 RIMSSLLPAGKRAIATEISVATSAGGFILPNDRVDVIMVRRKTEQEGFLTEVILSNIRVL 180

Query: 178 AIDHNIDSD---ERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSED 233
           AID  I+ D    R  VG+TATLELTP Q+K +  AQ +A +L+L LRS+AD+    ++ 
Sbjct: 181 AIDQRIEEDAQGNRTAVGTTATLELTPDQSKIITVAQQMADRLTLALRSVADVQEPDTDG 240

Query: 234 SDVWDVQEEG-KEIQIIKAGVIVN 256
           +      E+G   IQ+I++G I N
Sbjct: 241 AKHLLSGEDGTSAIQLIRSGAITN 264


>gi|163851902|ref|YP_001639945.1| Flp pilus assembly protein CpaB [Methylobacterium extorquens PA1]
 gi|254561620|ref|YP_003068715.1| pilus assembly protein cpaB [Methylobacterium extorquens DM4]
 gi|163663507|gb|ABY30874.1| Flp pilus assembly protein CpaB [Methylobacterium extorquens PA1]
 gi|254268898|emb|CAX24859.1| pilus assembly protein cpaB [Methylobacterium extorquens DM4]
          Length = 261

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 133/258 (51%), Gaps = 8/258 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRL-VSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  RL  + ++ V    A ++      +P      +     P     VL++  +L +G 
Sbjct: 1   MKPARLAVLGIALVAGCGAALLMQGEEKAPEPAPVAKAEPVAPVPMSEVLVAAAELPMGQ 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            + P  L W+A+PE+ +  G I+    P  +++  G ++R      +PIR E+LV  G+G
Sbjct: 61  TLKPEDLRWIAWPEQAISPGLIERRAAPKGLEDSVGAIIRTGFSANEPIRPERLVKAGSG 120

Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
            +S++LP G RA  +      SS+ GG + PNDHVDV+   S    +     +L+++RV+
Sbjct: 121 FMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKT-SNEGTEQFAETLLTDVRVL 179

Query: 178 AIDHNIDSDERVLV--GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+   +       V    TATL LTP QA+ +  AQ V +LSLVLRSI D +  ++  S+
Sbjct: 180 AVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQD-SARTAALSE 238

Query: 236 VWDVQEEGKEIQIIKAGV 253
             D+  EG  + +++ GV
Sbjct: 239 EADMPPEGP-MTVVRFGV 255


>gi|163733543|ref|ZP_02140986.1| pilus assembly domain protein [Roseobacter litoralis Och 149]
 gi|161393331|gb|EDQ17657.1| pilus assembly domain protein [Roseobacter litoralis Och 149]
          Length = 276

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 6/241 (2%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVGMVVTPN 64
           M ++     A  A  +A   +  +  +                V ++   L  G  + P 
Sbjct: 1   MVLLAGVALAGGAVYMAKGYIGQYQAELARAQQMQSAIVPTQPVFVATRHLRYGDTLNPE 60

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSS 123
            +  V +P   + DG   D+         +  L+  P+   + +   K+ + G   GL++
Sbjct: 61  DVRAVNWPTNAIPDGIFTDIAVLFPEGTDEPRLIIRPMEPNEALLAVKITEPGEDIGLTT 120

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---SLSERKPTVTVVLSNIRVIAID 180
            L KG RA  + + +++ V G ++P D VDV       + + R+    ++ S +R+IA+D
Sbjct: 121 RLEKGMRAFAIRVDVATGVSGFLRPGDKVDVYWTGGVQTSNGREDVTKLIQSAVRLIAVD 180

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
              D      +  T T+  +P Q  AL  AQS   LSL L    D         +   + 
Sbjct: 181 QTEDQMNGARIARTVTVAASPEQVAALAQAQSTGNLSLSLVGAGDDAELDEIKVNQVSLL 240

Query: 241 E 241
            
Sbjct: 241 G 241


>gi|148258234|ref|YP_001242819.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1]
 gi|146410407|gb|ABQ38913.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. BTAi1]
          Length = 249

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 12/250 (4%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           + A                    + + VL++K D+ +G  + P  L+W ++P       F
Sbjct: 1   MAAYLASGSDDRPAPVAAVAPTVETVEVLVAKSDINLGQSLKPEHLQWQSWPAATTSSSF 60

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISIS 139
           I    +     E+ G++ R P + G+PIR +KLV     G ++++LP G RA + +IS  
Sbjct: 61  IQRKDRSKGDAEVTGMIARAPFIAGEPIREQKLVKADGSGFMAAILPAGMRAVSTEISPE 120

Query: 140 SAVGGMIKPNDHVDVVMVRSLS-------ERKPTVTVVLSNIRVIAIDHNIDSDER--VL 190
           +  GG I PND VDV++ +              +  ++LSNIRV+AID      +    +
Sbjct: 121 TGAGGFILPNDRVDVLLSKRERNPEQPNAGDVISSEIILSNIRVLAIDQAPKEKDGQTTV 180

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
           VG T TLEL P QA+ L  A+    LSL LRSIAD+N + +   +  + +  G  + +I+
Sbjct: 181 VGKTVTLELKPEQAETLARARQSGTLSLALRSIADINVAENRSDE--NSRRRGDSVAVIR 238

Query: 251 AGVIVNKDGE 260
            G+      +
Sbjct: 239 FGIPSTMTTQ 248


>gi|148976663|ref|ZP_01813350.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3]
 gi|145964014|gb|EDK29272.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3]
          Length = 249

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 109/254 (42%), Gaps = 18/254 (7%)

Query: 1   MKLTRLMGI-VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M  +++  + ++S VF L A   A + +     Q +  I     +   V+++  ++  G 
Sbjct: 1   MNKSQVFLLFLLSVVFGLAAVFFAKQWM---DDQVQPTIEVEKVERHPVVVASQEIEAGT 57

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           V+    L       + + +    D       +EL G +V   I  G+ +   +    G G
Sbjct: 58  VIEEQFLTTKLMEVDWINENNYSD------KEELIGKVVANTIYAGEVLHKLRFTVPGEG 111

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
             L++L+P+ KRA T+ +     V G + P + VD++   S  +       VL +I+V+A
Sbjct: 112 STLAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILNTVSYGKNSAATQTVLKDIKVLA 171

Query: 179 IDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           +D    + E   ++    TLE+TP  A+ L+ A+S   + L LR+  ++         V 
Sbjct: 172 VDQTARTKENSPIIVRAVTLEVTPKDAEKLLTAKSKGSIQLTLRNPHEVEK------KVV 225

Query: 238 DVQEEGKEIQIIKA 251
                   + IIK 
Sbjct: 226 RRYVPRPSVTIIKG 239


>gi|240139025|ref|YP_002963500.1| pilus assembly protein cpaB [Methylobacterium extorquens AM1]
 gi|240008997|gb|ACS40223.1| pilus assembly protein cpaB [Methylobacterium extorquens AM1]
          Length = 261

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 133/258 (51%), Gaps = 8/258 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRL-VSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  RL  + ++ V    A ++      +P      +     P     VL++  +L +G 
Sbjct: 1   MKPARLAVLGIALVAGCGAALLMQGEEKAPEPAPVAKAEPVVPVPMSEVLVAAAELPMGQ 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            + P  L W+A+PE+ +  G I+    P  +++  G ++R      +PIR E+LV  G+G
Sbjct: 61  TLKPEDLRWIAWPEQAISPGLIERRAAPKGLEDSVGAIIRTGFSANEPIRPERLVKAGSG 120

Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
            +S++LP G RA  +      SS+ GG + PNDHVDV+   S    +     +L+++RV+
Sbjct: 121 FMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKT-SNEGTEQFAETLLTDVRVL 179

Query: 178 AIDHNIDSDERVLV--GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+   +       V    TATL LTP QA+ +  AQ V +LSLVLRSI D +  ++  S+
Sbjct: 180 AVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQD-SARTAALSE 238

Query: 236 VWDVQEEGKEIQIIKAGV 253
             D+  EG  + +++ GV
Sbjct: 239 EADMPPEGP-MTVVRFGV 255


>gi|209886527|ref|YP_002290384.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5]
 gi|209874723|gb|ACI94519.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5]
          Length = 272

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 14/234 (5%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
                   E        +  +VL++K D+ +G  +    + W  +P       FI    +
Sbjct: 24  SGSDQKPAEVAAPAPKLETTDVLVAKADIPLGQTIKAEDMTWQTWPAATASSSFIRKSER 83

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGM 145
            +A+ +L G + R P L G+PIR  KLV     G ++++LP G RA + +IS  +  GG 
Sbjct: 84  ASAVADLTGSIARSPFLAGEPIRETKLVKSNGSGFMAAILPSGMRAVSTEISPETGAGGF 143

Query: 146 IKPNDHVDVVMVRS------LSERKPTVTVVLSNIRVIAIDHNIDS--DERVLVGSTATL 197
           I PND VDV++ R             +  ++LS++RV+AID  I+    ++V+VG TATL
Sbjct: 144 ILPNDRVDVMLSRRQRNPDSNGGEMVSSEIILSDVRVLAIDQTIEEKNGQKVVVGKTATL 203

Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           EL P QA+ L  ++    L+L LRS+ D N  +  +        + K I + + 
Sbjct: 204 ELKPAQAEMLTRSRQSGTLTLALRSLVDANKQNEVEEAT-----DEKVITVYRG 252


>gi|110636320|ref|YP_676528.1| pilus assembly protein cpaB [Mesorhizobium sp. BNC1]
 gi|110287304|gb|ABG65363.1| pilus assembly protein cpaB [Chelativorans sp. BNC1]
          Length = 270

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 95/266 (35%), Positives = 144/266 (54%), Gaps = 11/266 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQT-EEVITENPAKFINVLISKGDLAVGM 59
           M  +R++ + V+   A+ AG +A  L SP  V        + P    +VL+   D+ VG 
Sbjct: 1   MNKSRIVILGVAVAAAIGAGYLAKNLASPQKVAAVAPTPEKPPVSLTDVLVLTQDVPVGE 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +    + W A+P E+V D FI    +P+A++ +   + R+P+  G+P+R  KLV  G+ 
Sbjct: 61  PINGAAM-WQAWPAESVMDAFITREREPDALETIRNAVARLPLFAGEPVRRSKLVGEGDS 119

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIR 175
            L+++LP GKRA    I+  ++ GG I PND VDV+M R   E           VL NIR
Sbjct: 120 FLAAILPPGKRAVATRIAADTSAGGFILPNDRVDVIMTRRADEGSSPNGFITETVLENIR 179

Query: 176 VIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSS 231
           V+AID  I  DE   RV +G TATLELTP +A+ +  AQ +A +L+L LRS+AD N  ++
Sbjct: 180 VLAIDQTIHEDEEGRRVKLGETATLELTPEEAEVITVAQQLADRLTLSLRSVADSNEEAT 239

Query: 232 EDSDVWDVQEE-GKEIQIIKAGVIVN 256
           +           G  +++IK+G    
Sbjct: 240 DRGLHLVTGTGRGDSVRLIKSGETSI 265


>gi|126729099|ref|ZP_01744913.1| CpaB family protein [Sagittula stellata E-37]
 gi|126710089|gb|EBA09141.1| CpaB family protein [Sagittula stellata E-37]
          Length = 288

 Score =  169 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 103/255 (40%), Gaps = 11/255 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVG 58
           M+L   + ++     A  A  +A   +  +     +   +         + +S   +A G
Sbjct: 1   MRLVFGLVLLAGIGLAGFAVYMAQNYIGAYETALVQARQQTHVSVPTKQIYVSARPIAYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +T   +    +PEE + +G   D   P   + ++  +    I   + I   K+   G 
Sbjct: 61  QEITEEDIRLAPWPEEIMPEGIF-DEETPLLTENMEPRVALRAIDAFEAIVPSKVSQPGG 119

Query: 119 -GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVL 171
             GL+  L  G+ A  + + ++S V G ++P D VDV     +        R     ++L
Sbjct: 120 SAGLTHYLKPGESAFAIRVDVASGVSGFLRPGDRVDVYWTGRVDSRDPNMPRGEVTKMIL 179

Query: 172 SNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           + IR+IAID N ++D     +  T T+  T  Q   L  AQS  +L+L L S  +   + 
Sbjct: 180 AGIRLIAIDQNSEADTSGTSIARTVTVAATREQTLVLTHAQSTGQLTLSLISQNEDGEAI 239

Query: 231 SEDSDVWDVQEEGKE 245
           + + D   +    + 
Sbjct: 240 TTEVDQMSMLGLTRA 254


>gi|86147468|ref|ZP_01065780.1| Flp pilus assembly protein CpaB [Vibrio sp. MED222]
 gi|85834761|gb|EAQ52907.1| Flp pilus assembly protein CpaB [Vibrio sp. MED222]
          Length = 249

 Score =  169 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 18/254 (7%)

Query: 1   MKLTRLMGI-VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M  +++  + ++S VF L A   A + +     Q +  I     +   V+++  ++  G 
Sbjct: 1   MNKSQVFLLFLLSVVFGLAAVFFAKQWM---DNQVQPTIEVEEVERHPVVVASQEIEAGT 57

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           V+    L       + + +    D +      EL G +V   I  G+ +   +    G G
Sbjct: 58  VIEDQYLTTKLMEVDWINENNYSDQN------ELIGKVVANTIYAGEVLHKLRFTVPGEG 111

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
             L++L+P+ KRA T+ +     V G + P + VD++   S  +       VL +I+V+A
Sbjct: 112 STLAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILNTVSYGKNSAATRTVLKDIKVLA 171

Query: 179 IDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           +D    + E   ++    TLE+TP  A+ L+ A+S   + L LR+  +++        V 
Sbjct: 172 VDQTARTKENSPIIVRAVTLEVTPKDAEKLLTAKSKGSIQLTLRNPHEVDK------KVV 225

Query: 238 DVQEEGKEIQIIKA 251
                   + IIK 
Sbjct: 226 RRYVPRPSVTIIKG 239


>gi|89053489|ref|YP_508940.1| Flp pilus assembly CpaB [Jannaschia sp. CCS1]
 gi|88863038|gb|ABD53915.1| Flp pilus assembly CpaB [Jannaschia sp. CCS1]
          Length = 274

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 102/250 (40%), Gaps = 3/250 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M++  ++ + V    A  A  IA      +     E   +     + +++    L  G  
Sbjct: 1   MRIVFILVLAVGVGLAGFAVSIAKDRFDQYQTALAE-QRDAILPTVELIVVSRQLRYGEQ 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           +TP+ ++ + +P E+V  G    + +     E     V   + + +PI L K+     + 
Sbjct: 60  ITPDDVQLIRWPAEHVPFGAFTTMDELFPPDEEGARTVLRMMEQDEPILLVKVTAPGEDA 119

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
           G++S L  G RA  + + ++S V G ++P D VDV              ++ +N+++IAI
Sbjct: 120 GVASRLEAGMRAIALRVDVNSGVSGFLRPGDRVDVYWTGPGRNGDTVTRLIRANVQLIAI 179

Query: 180 DHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D   D       +  T T+   P    AL  AQ    L+L L  + D       +     
Sbjct: 180 DQIADEQRNSPTIARTITVTARPEDVAALTQAQGSGSLTLALVGVGDETEQGEVEVSTSA 239

Query: 239 VQEEGKEIQI 248
           +  E +E+ +
Sbjct: 240 LLGEIEEVAV 249


>gi|99082185|ref|YP_614339.1| Flp pilus assembly CpaB [Ruegeria sp. TM1040]
 gi|99038465|gb|ABF65077.1| pilus assembly protein [Ruegeria sp. TM1040]
          Length = 287

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 11/255 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A ++A   +  +     +  +        +NV ++   L  G
Sbjct: 1   MRAAFGLVLIVGVALAGGAVMMAKNYIEAYQHALAQERSNRDAAVPTVNVFVANKTLTYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDR- 116
             +T   +  VA+PE  + +G   +  +            V   + K +P+   K+    
Sbjct: 61  EELTKESVRSVAWPENALPEGVFHEEAELFPSDSPKDARFVLRTMEKNEPLLAVKVTAPG 120

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVV 170
            + G++S L KG RA  + + ++S V G ++P D VDV                    ++
Sbjct: 121 EDAGITSRLEKGMRAFAIRVDVASGVSGFLRPGDRVDVYWSGQPPARGGQELGGEVTRLI 180

Query: 171 LSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
            SNI +IA+D     D    ++  T T++  P +   L  AQ+  +LSL L    D   +
Sbjct: 181 QSNIELIAVDQMSGGDFSSAIIARTVTVKAQPEEVARLAQAQATGRLSLALVGAQDDTIA 240

Query: 230 SSEDSDVWDVQEEGK 244
           S  + D   +   G 
Sbjct: 241 SLVEVDQRALFGLGD 255


>gi|218530653|ref|YP_002421469.1| Flp pilus assembly protein CpaB [Methylobacterium chloromethanicum
           CM4]
 gi|218522956|gb|ACK83541.1| Flp pilus assembly protein CpaB [Methylobacterium chloromethanicum
           CM4]
          Length = 261

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 130/258 (50%), Gaps = 8/258 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRL-VSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  RL  + ++ V    A ++      +P  V   +     P     VL++  +L +G 
Sbjct: 1   MKPARLAVLGIALVAGCGAALLMQGEEKAPEAVPVAKAEPVAPVPMSEVLVAAAELPMGQ 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            + P  L W+A+PE+ +  G I+    P  +++  G ++R      +PIR E+LV  G+G
Sbjct: 61  TLKPEDLRWLAWPEQAISPGLIERRAAPKGLEDAVGAIIRTGFSANEPIRPERLVKAGSG 120

Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
            +S++LP G RA  +      SS+ GG + PNDHVDV+   S    +     +L+++RV+
Sbjct: 121 FMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKT-SNEGTEQFAETLLTDVRVL 179

Query: 178 AIDHNIDSDERVLV--GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+   +       V    TATL LTP QA+ +  AQ V +LSLVLRSI D   +++   +
Sbjct: 180 AVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQDSARTAALFEE 239

Query: 236 VWDVQEEGKEIQIIKAGV 253
                E    + +++ GV
Sbjct: 240 AGMPPEG--PMTVVRFGV 255


>gi|86137992|ref|ZP_01056568.1| CpaB family protein [Roseobacter sp. MED193]
 gi|85825584|gb|EAQ45783.1| CpaB family protein [Roseobacter sp. MED193]
          Length = 286

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 108/255 (42%), Gaps = 10/255 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A ++A   +S +  +               +V ++   L  G
Sbjct: 1   MRAVFGLVLIVGVALAGGAVMMAKNYISAYQTELARERANRGEVIPTTDVFVATKQLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDR- 116
             +T + +  V +P + + +G    +             +V   + K + +   KL +  
Sbjct: 61  ERLTEDAVRKVRWPSDAIPEGAFTTLETLFPPANPGDLRVVLRTMEKDEALLEAKLTNPG 120

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTVVL 171
            + G++S L +G RA  + + +SS V G ++P DHVDV     + +      +    ++ 
Sbjct: 121 QDAGITSQLQRGMRAFAISVDVSSGVSGFLRPGDHVDVYWTGGVRDGSGGRGQEITRLIE 180

Query: 172 SNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
            +I +IA+D +  ++     +  T T+ + P Q  AL  AQ+  +LSL L    D   +S
Sbjct: 181 PSIELIAVDQSASTETNGATIARTVTVAVQPEQVAALAQAQTTGRLSLSLVGAGDDTVAS 240

Query: 231 SEDSDVWDVQEEGKE 245
             + +   +   G++
Sbjct: 241 VIEVNQRSLLGLGEQ 255


>gi|163738371|ref|ZP_02145786.1| CpaB family protein [Phaeobacter gallaeciensis BS107]
 gi|161388292|gb|EDQ12646.1| CpaB family protein [Phaeobacter gallaeciensis BS107]
          Length = 286

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 10/253 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A ++A   ++ +  +              ++V I+   L  G
Sbjct: 1   MRAVFGLVLIVGVALAGGAVMMAKNYITAYQNELARERASRGENIPLVDVFIANDQLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDR- 116
             +T + +  V +PE  + +G    +      Q  D   +V   + K + I   K+    
Sbjct: 61  ERLTRDSVRSVRWPENAIPEGAFLTMDALFPPQYPDDLRVVLRRMEKDEAILAVKVTKPG 120

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVL 171
            + G++S L KG RA  + + +SS V G ++P DHVDV    SL++           ++ 
Sbjct: 121 EDAGITSRLAKGMRAFAIRVDVSSGVSGFLRPGDHVDVYWTGSLNDQNGGRNGEFTRLIQ 180

Query: 172 SNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           +NI +IA+D     D +  ++  T T  + P Q  AL  AQS  +LSL L    D   +S
Sbjct: 181 TNIELIAVDQTAGGDLDGAVIARTVTAAVRPEQVAALAQAQSTGRLSLSLVGAGDDTVAS 240

Query: 231 SEDSDVWDVQEEG 243
             + D   +   G
Sbjct: 241 VIEVDQRSLLGLG 253


>gi|86355863|ref|YP_467755.1| pilus assembly protein [Rhizobium etli CFN 42]
 gi|86279965|gb|ABC89028.1| pilus assembly protein [Rhizobium etli CFN 42]
          Length = 271

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 114/267 (42%), Positives = 163/267 (61%), Gaps = 6/267 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ V A +AG++AMR+     V T+          +N+L+S  +L VG  
Sbjct: 1   MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIKKEPTVNILVSNKNLPVGAR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + W+A+P+E V  GFI +  +P+A+++L G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LGDDSVHWMAWPKEGVVQGFITEADRPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR  +E  K     VLSN+RV+AI
Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180

Query: 180 DHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235
           D  I   D   + +VG+TATLELTP Q K L  AQ +A +LSL LRS+AD     +  +D
Sbjct: 181 DQQIQEKDDGSKTVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240

Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDGEG 261
                + G   IQ+IK+G IV   G  
Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDAGAA 267


>gi|84387246|ref|ZP_00990267.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01]
 gi|84377893|gb|EAP94755.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01]
          Length = 249

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 109/254 (42%), Gaps = 18/254 (7%)

Query: 1   MKLTRLMGI-VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M  +++  + ++S VF L A   A + +     Q +  +     +   V+++  ++  G 
Sbjct: 1   MNKSQVFLLFLLSVVFGLAAVFFAKQWM---DDQVQPTVEVETVERRPVVVASQEIEAGT 57

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           ++    L       + + +    D        +L G +V   I  G+ +   +    G G
Sbjct: 58  IIEDQFLTTRLMEVDWINENNYSDKA------DLIGKVVANTIYAGEVLHKLRFTVPGEG 111

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
             L++L+P+ KRA T+ +     V G + P + VD++   S  +       VL +I+V+A
Sbjct: 112 STLAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILNTISYGKNSAATQTVLKDIKVLA 171

Query: 179 IDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           +D    + E   ++    TLE+TP +A+ L+ A+S   + L LR+  ++         V 
Sbjct: 172 VDQTAKTKENSPIIVRAVTLEMTPKEAEKLLTAKSKGSIQLTLRNPHEVEK------KVV 225

Query: 238 DVQEEGKEIQIIKA 251
                   + IIK 
Sbjct: 226 RRYVPRPSVTIIKG 239


>gi|110632966|ref|YP_673174.1| putative CpaB2 pilus assembly protein [Mesorhizobium sp. BNC1]
 gi|110283950|gb|ABG62009.1| putative CpaB2 pilus assembly protein [Chelativorans sp. BNC1]
          Length = 267

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 6/236 (2%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + R++ ++ +     +A  +AM    P   Q    + +       VL++  DL  G V+ 
Sbjct: 1   MVRILILLFALGSGGIAAWLAMGTAEPTASQPAAAVEQEADPAREVLVAGADLVHGSVLD 60

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            + L W  +    V   FI    +P+A Q L G LVR   + G+PIR ++L   G G LS
Sbjct: 61  ESHLRWQPWTAGTVPAVFISRAAKPDAPQALKGSLVRGGFVAGEPIREDRLALPGAGFLS 120

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRVIA 178
             LP GKRA  + ++  SA GG I PND VD++            + +   +LSNIRV+A
Sbjct: 121 GQLPSGKRAIAVRVTAESAAGGFILPNDRVDLIHTSVLSGQSGGEQVSSRTILSNIRVLA 180

Query: 179 IDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           +D N   +SD   +V  TATLE+ P Q   + AA++   +SL LR+ +D +  ++ 
Sbjct: 181 VDQNASGESDGEAVVAKTATLEVEPDQIPIVTAAEASGTISLALRAASDEDEPAAA 236


>gi|260574617|ref|ZP_05842620.1| Flp pilus assembly protein CpaB [Rhodobacter sp. SW2]
 gi|259023034|gb|EEW26327.1| Flp pilus assembly protein CpaB [Rhodobacter sp. SW2]
          Length = 284

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 103/249 (41%), Gaps = 8/249 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58
           M++   + +VV    A  A  +A   +S        E          + V +    L  G
Sbjct: 1   MRMVFGLVLVVGLALAGFAVYMAQGFISQTQAELAQERAARAKAGPLVEVYVVNKPLNYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117
             +T   ++ + +P+  + +    D         +    V   + K +P+   K+ +   
Sbjct: 61  DPLTKEDVQKIYWPQNALPETIFTDEALLFPANAVGQRFVLRQMEKFEPLLAVKVTEPGQ 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSNI 174
           + GL++ L KG RA  + +  +S V G + P D+VDV    + ++         ++ S I
Sbjct: 121 DAGLTARLAKGMRAFAIKVDATSGVSGFLHPGDNVDVYWTGTANDAGVGGEMTRLIESTI 180

Query: 175 RVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           ++IA+D   + D     +V +T T+E +P +   L  AQ+  KL+L L    D + +   
Sbjct: 181 KIIAVDQMANDDRSGSAVVAATVTVEASPEEVARLAQAQATGKLALSLVGANDASVAGLV 240

Query: 233 DSDVWDVQE 241
           + D   +  
Sbjct: 241 EVDSRSLLG 249


>gi|77462454|ref|YP_351958.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides
           2.4.1]
 gi|221638317|ref|YP_002524579.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides KD131]
 gi|332560338|ref|ZP_08414660.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides WS8N]
 gi|77386872|gb|ABA78057.1| Putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides
           2.4.1]
 gi|221159098|gb|ACM00078.1| Flp pilus assembly protein CpaB precursor [Rhodobacter sphaeroides
           KD131]
 gi|332278050|gb|EGJ23365.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides WS8N]
          Length = 274

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 100/254 (39%), Gaps = 7/254 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58
           M+L     +++    A  A  +A   +S   +  E+           + V ++   L  G
Sbjct: 1   MRLVFAFVLLIGIALAGFAVYMAQGYISQTQIALEKERAARKKLGPMVEVFVTNKPLNYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +T   +  + +P   + +                   V   + K +P+   K+     
Sbjct: 61  APLTRADVRTIMWPANALPETIFQKESDLFP-DPAKPRYVLRQMEKFEPVLGVKVTAP-G 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
                 L  G RA  + + ++S V G ++P D VDV    S S  +    ++   I ++A
Sbjct: 119 IEAGIRLASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGSASSGET-TRLIEKTIPIVA 177

Query: 179 IDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           +D   ++D     ++  T T+E++P Q   L  AQ+  +LSL L    D   +++   D 
Sbjct: 178 VDQTANADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSLVGRDDTTEATATPVDT 237

Query: 237 WDVQEEGKEIQIIK 250
            ++  E  ++  ++
Sbjct: 238 RNLIGEPDKVVEVE 251


>gi|126461332|ref|YP_001042446.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126102996|gb|ABN75674.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 274

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 100/254 (39%), Gaps = 7/254 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58
           M+L     +++    A  A  +A   +S   +  E+           + V ++   L  G
Sbjct: 1   MRLVFAFVLLIGIALAGFAVYMAQGYISQTQIALEKERAARKKLGPMVEVFVTNKPLNYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +T   +  + +P   + +                   V   + K +P+   K+     
Sbjct: 61  APLTRADVRTIMWPANALPETIFQKESDLFP-DPAKPRYVLRQMEKFEPVLGVKVTAP-G 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
                 L  G RA  + + ++S V G ++P D VDV    S S  +    ++   I ++A
Sbjct: 119 IEAGIRLASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGSASSGET-TRLIEKTIPIVA 177

Query: 179 IDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           +D   ++D     ++  T T+E++P Q   L  AQ+  +LSL L    D   +++   D 
Sbjct: 178 VDQTANADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSLVGRDDTTEATATPVDT 237

Query: 237 WDVQEEGKEIQIIK 250
            ++  E  ++  ++
Sbjct: 238 RNLIGEPDKVVEVE 251


>gi|170750188|ref|YP_001756448.1| Flp pilus assembly protein CpaB [Methylobacterium radiotolerans JCM
           2831]
 gi|170656710|gb|ACB25765.1| Flp pilus assembly protein CpaB [Methylobacterium radiotolerans JCM
           2831]
          Length = 271

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 124/272 (45%), Gaps = 14/272 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R   + ++      A  + M    P            P    +VL++  D+ +G V
Sbjct: 1   MNPARFAVLGIALAAGTGAAFL-MSGGDPPPPPPPPAAEAPPQPTTDVLVAAIDMPMGQV 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    L W  +P+  V +G++     P A++E  G  VR   L G+PIR +KLV   +G 
Sbjct: 60  LRAADLRWQPWPDGAVANGYMTRKINPKALEETVGASVRSGFLTGEPIRAQKLVRPESGF 119

Query: 121 LSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVL 171
           ++++LP G RA  +      +++ GG I PND VDV+                     +L
Sbjct: 120 MAAILPPGMRAVAIVTDSRGTNSAGGFILPNDRVDVIRTFRDESNSRANNSDVQLSQTIL 179

Query: 172 SNIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN-- 227
           ++IRV+AI       +   V+ G TATL +TP QA+ L  AQ V  L+L LRS+AD    
Sbjct: 180 TDIRVLAIGQLVQEKNGTNVVTGETATLAVTPAQAETLALAQKVGALTLSLRSLADAGRP 239

Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259
           P ++  ++    Q     + +++ GV   +  
Sbjct: 240 PEATPLAEASAAQMPEPALTVVRFGVARQQTP 271


>gi|292491518|ref|YP_003526957.1| Flp pilus assembly protein CpaB [Nitrosococcus halophilus Nc4]
 gi|291580113|gb|ADE14570.1| Flp pilus assembly protein CpaB [Nitrosococcus halophilus Nc4]
          Length = 265

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 116/263 (44%), Gaps = 12/263 (4%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   LM   ++ V    A  +A + +          +     +   V+++  ++  G  +
Sbjct: 3   KRKSLMLFFIAIVLGTGATWMANQWLQDRMQPGPVEVVAP--ETAPVVVAALEIPFGQKI 60

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
               L+ +++P +N+ +G   +         ++G +    I  G+PI  ++ V++  G  
Sbjct: 61  ETMHLKVISWPADNMPEGIFHETS------AVEGRVASQKIYPGEPIMKDRAVEQLGGST 114

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRVIA 178
           LS+++P+ KRA T+ ++    V G + P + VDV+  R    S+ K  +  +L N++V+A
Sbjct: 115 LSAIVPRDKRAVTVRVNDVIGVAGFLLPGNQVDVLSSRKIDRSQNKVQIETILQNLKVLA 174

Query: 179 IDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           +D     D  + LV    TLE  P QA+ L  A     + LVLR+  D+      +    
Sbjct: 175 VDQTASQDKNQPLVVRAVTLEADPKQAEKLFKATEEGTIQLVLRNPQDVAVIKDPEPVKV 234

Query: 238 DVQEEGKEIQIIKAGVIVNKDGE 260
             +   K  Q I   V V +  +
Sbjct: 235 AKKTYSKAPQPISDSVTVIRGTQ 257


>gi|254477805|ref|ZP_05091191.1| Flp pilus assembly protein CpaB [Ruegeria sp. R11]
 gi|214032048|gb|EEB72883.1| Flp pilus assembly protein CpaB [Ruegeria sp. R11]
          Length = 286

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 107/251 (42%), Gaps = 10/251 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A ++A   ++ +     E           ++V I+   L  G
Sbjct: 1   MRAVFGLVLIVGIALAGGAVMMAKNYITAYQNALAEERASRGEVIPLVDVFIANEPLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ-ELDGVLVRVPILKGDPIRLEKLVDR- 116
             +TP  +  V +P+  + +G      +    Q E    +V   + K + I   K+    
Sbjct: 61  ERLTPERVRAVRWPQNAIPEGAFLTAEELFPPQAEEKPRVVLRTMEKDEAILAIKVTKPG 120

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTVVL 171
            + GL+S L +G RA  + + +SS V G ++P D VDV     + ++          ++ 
Sbjct: 121 EDAGLTSRLERGMRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRVDDQTSERSGDFTRLIQ 180

Query: 172 SNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           +NI +IAID +  SD +   +  T T+   P Q  AL  AQS  +L+L L    D   +S
Sbjct: 181 ANIELIAIDQSAGSDLDGATIARTVTVSARPEQVAALAQAQSTGRLTLSLVGAEDDTVAS 240

Query: 231 SEDSDVWDVQE 241
             + D   +  
Sbjct: 241 VIEVDQRSLLG 251


>gi|83943940|ref|ZP_00956397.1| CpaB family protein [Sulfitobacter sp. EE-36]
 gi|83845187|gb|EAP83067.1| CpaB family protein [Sulfitobacter sp. EE-36]
          Length = 287

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 105/256 (41%), Gaps = 11/256 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVG 58
           M++   + ++     A  A  +A   +S +    Q  +         + V ++ G L  G
Sbjct: 1   MRMVFGLVLLAGIALAGGAVYLAKGRISEYQRANQQAQEALAQIVPTVGVYVANGPLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +T   +  V +PE  + +G   +          D  +V   + K + I   K+ + G 
Sbjct: 61  QRLTREDVRQVNWPENAIPEGTFIEEAALFPENSDDLRVVLRAMEKDEAIMAVKVTEPGA 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-------SLSERKPTVTVV 170
           + GL+S L +G RA  + + +SS V G ++P D VDV             ++      ++
Sbjct: 121 DTGLTSQLERGSRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRINRGGNDRADTGDVTKLI 180

Query: 171 LSNIRVIAIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
            + +++IAID +         + +T T+ + P Q  AL  AQS   LSL L    D   +
Sbjct: 181 EAGVKIIAIDQSAGGERSEAAIANTVTVAVQPYQVAALAQAQSTGDLSLSLVGAEDDTVA 240

Query: 230 SSEDSDVWDVQEEGKE 245
              + D   +    +E
Sbjct: 241 GEIEVDQRRLLGLTEE 256


>gi|83954513|ref|ZP_00963224.1| CpaB family protein [Sulfitobacter sp. NAS-14.1]
 gi|83840797|gb|EAP79968.1| CpaB family protein [Sulfitobacter sp. NAS-14.1]
          Length = 287

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 11/256 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVG 58
           M++   + ++     A  A  +A   +  +    Q  +         + V ++ G L  G
Sbjct: 1   MRMVFGLVLLAGIALAGGAVYLAKGRIGEYQRANQQAQEALAQIVPTVGVYVANGPLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +T   +  V +PE+ + +G   +          D  +V   + K + I   K+ + G 
Sbjct: 61  QRLTREDVRQVKWPEDAIPEGTFIEEAALFPENSDDLRVVLRAMEKDEAIMAAKVTEPGA 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-------SLSERKPTVTVV 170
           + GL+S L +G RA  + + +SS V G ++P D VDV             ++      ++
Sbjct: 121 DTGLTSQLERGSRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRINRGGNDRADTGDVTKLI 180

Query: 171 LSNIRVIAIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
            + +++IAID +         + +T T+ + P Q  AL  AQS   LSL L    D   +
Sbjct: 181 EAGVKIIAIDQSAGGERSEAAIANTVTVAVQPYQVAALAQAQSTGDLSLSLVGAEDDTVA 240

Query: 230 SSEDSDVWDVQEEGKE 245
              + D   +    +E
Sbjct: 241 GEIEVDQRRLLGLTEE 256


>gi|296444396|ref|ZP_06886361.1| Flp pilus assembly protein CpaB [Methylosinus trichosporium OB3b]
 gi|296258043|gb|EFH05105.1| Flp pilus assembly protein CpaB [Methylosinus trichosporium OB3b]
          Length = 264

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 122/265 (46%), Gaps = 14/265 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   ++  + V+ V    A  + +            V    P     VL++  DL  G  
Sbjct: 1   MNKAQIAVLGVAIVAGGGA-FMMLSTEPTPPQPMHLVAPPPPRTTDQVLVAARDLPFGAA 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +      W+ +P   V  G +     P   ++++G  VR P+  G+PIR E+L+     G
Sbjct: 60  LAEADTSWIEWPISAVPPGVLRKSEAPEIKKDIEGAFVRTPLANGEPIRRERLIKGQTPG 119

Query: 121 L-SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVLSN 173
           L S+++  G+RA  +D+S ++  GG I PNDHVDV+ +    ++           V+L N
Sbjct: 120 LMSTMISAGRRAVAIDVSPNTTAGGFILPNDHVDVIRLYRDPDQGGQIGSDMNSEVILRN 179

Query: 174 IRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +RV+A+       + E  + G+TATL+L P QA+ ++ AQ   +L+L+LR IAD      
Sbjct: 180 VRVLAMGPVFQTKNGESSVTGATATLDLEPRQAELVILAQRSGQLALMLRPIADA----L 235

Query: 232 EDSDVWDVQEEGKEIQIIKAGVIVN 256
            D            + I++ GV   
Sbjct: 236 ADEKPESAAPGQDPLTIVRFGVTST 260


>gi|323499922|ref|ZP_08104881.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326]
 gi|323315163|gb|EGA68215.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326]
          Length = 247

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 11/251 (4%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   ++  ++S VF L A   A + +        E+      +   V+I+  ++  G  +
Sbjct: 3   RNQVILLFLLSIVFGLGAVFFAKQWMDRQLQPQVEM---ELIEREPVIIASQEIPAGTPI 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
               +       +   +G           +EL G +V   I +G+ +   +L   G G  
Sbjct: 60  EEQHVSSRLLEVDWRNEGQFTK------AEELIGQVVATTIYQGEVVHQNRLAAPGEGST 113

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L+SL+P+ KRA T+ ++    V G + P + VDV+     S        VL +I+V+A+D
Sbjct: 114 LASLIPENKRAVTIRVNDVIGVAGFLLPGNRVDVLNTIKYSSTYANTVTVLKDIKVLAVD 173

Query: 181 HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
               + E + ++    TLE++P  A+ L+ A+S  ++ L LR+  +      +       
Sbjct: 174 QTARTKENKPIIVRAVTLEVSPKDAEKLLTARSKGEIQLTLRNPHEEEKVVKKYVAPSVT 233

Query: 240 QEEGKEIQIIK 250
             +G E   I+
Sbjct: 234 IIKGTESSNIR 244


>gi|255262747|ref|ZP_05342089.1| Flp pilus assembly protein CpaB [Thalassiobium sp. R2A62]
 gi|255105082|gb|EET47756.1| Flp pilus assembly protein CpaB [Thalassiobium sp. R2A62]
          Length = 282

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 7/248 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58
           M+    + +V+    A  A  +A   +S + ++    E         +++  +K  L  G
Sbjct: 1   MRAVFGLVLVLGVALAGFAVYMAKGYISDNQLRLAQAEAARAAMVPTVDIFAAKNPLVYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117
            ++T   +  + +PE ++  G    + +     +    +V  PI   + I   K+     
Sbjct: 61  QMLTIEDVHHIRYPEASLPPGAFRTIEELFPNGDEKLRVVLRPIEPNEVILPVKVTSPGE 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---ERKPTVTVVLSNI 174
           + GL+  L +G RA  + + +SS V G ++P D VDV      +    R+    ++ S++
Sbjct: 121 DAGLTQRLAQGMRAFAIRVDVSSGVSGFVRPGDRVDVYWSGVANVGQRRQDLTRLIQSSV 180

Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           ++IAID + D ++    +  T T+E++ ++  AL  AQ+   LSL L    D       +
Sbjct: 181 KIIAIDQSADGNQSEARIARTVTVEVSQVEVAALAQAQATGNLSLALVGYGDNTDVGIVE 240

Query: 234 SDVWDVQE 241
            D  ++  
Sbjct: 241 IDTQELLG 248


>gi|39937141|ref|NP_949417.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris CGA009]
 gi|39650999|emb|CAE29522.1| possible pilus assembly protein cpaB [Rhodopseudomonas palustris
           CGA009]
          Length = 270

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 131/261 (50%), Gaps = 16/261 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+L++   +V+    A  A    +   S      +        + ++VL++K ++A+G +
Sbjct: 1   MRLSKPRIVVLGIALAAGAAAAFLASSSDSERPRQVAEPAPQLQTVDVLVAKSNIALGQL 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           VTP+ + W ++P ++  + F+     PN    L G + R P + G+PIR  KLV     G
Sbjct: 61  VTPSDVRWQSWPADSASEHFLRRDKMPNTEAFLAGTIARSPFVAGEPIREVKLVKPNGSG 120

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVLS 172
            ++++LP G RA + +IS  ++ GG I PND VDV++ +              T T +L+
Sbjct: 121 FMAAILPTGMRAVSTEISPETSAGGFILPNDKVDVILTKRDKSSDIPGAKDTVTSTTILT 180

Query: 173 NIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           N+RV+AID        + V+VG TATLELT  QA+ L  A+    LSL LRSIAD     
Sbjct: 181 NVRVLAIDQLPKEREGQNVVVGKTATLELTGDQAEVLTRARQSGTLSLALRSIADARIV- 239

Query: 231 SEDSDVWDVQEEGKEIQIIKA 251
                     +  K+I + + 
Sbjct: 240 -----AEASDQGDKQITVYRG 255


>gi|13474659|ref|NP_106228.1| pilus assembly protein cpaB [Mesorhizobium loti MAFF303099]
 gi|14025414|dbj|BAB52014.1| pilus assembly protein; CpaB [Mesorhizobium loti MAFF303099]
          Length = 271

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 92/267 (34%), Positives = 142/267 (53%), Gaps = 12/267 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58
           M  +RL+ + V+   A  AG +A  +V+    Q   +           +VL+  GD+A+G
Sbjct: 1   MPASRLIILSVAVAAAGGAGYVAKNMVAAPPPQIVVDSGPQAPAVPLQDVLVLSGDVAMG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +  N + W ++P + V   FI   + P+A+++L G + RVP+  G+P+R  KL+  G 
Sbjct: 61  NALQ-NNISWQSWPADGVNANFITKANAPDALEKLKGSIARVPMYAGEPVRRSKLIGEGQ 119

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNI 174
             +SS+LP G RA    IS  ++ GG I PND VDV+M R               +L NI
Sbjct: 120 SFMSSILPSGMRAVATTISADTSAGGFILPNDFVDVIMTRRADANSGSTGFNTETILKNI 179

Query: 175 RVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230
           RV+AID  I  DE   +  VG TATLELTP QA+ +  AQ +A +L+L LR++AD    +
Sbjct: 180 RVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTLALRAVADTQEKN 239

Query: 231 SEDSDVWDVQEEGK-EIQIIKAGVIVN 256
             ++D        K  +++IK+G +  
Sbjct: 240 VGEADYLVSGNGRKGTVRLIKSGEVSE 266


>gi|192292976|ref|YP_001993581.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
 gi|192286725|gb|ACF03106.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
          Length = 270

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 132/261 (50%), Gaps = 16/261 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+L++   +V+    A  A    +   S      +        + ++VL++K ++A+G +
Sbjct: 1   MRLSKPRIVVLGIALAAGAAAAFLASSSDSERPRQVAEPAPQLQTVDVLVAKSNIALGQL 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           VTP+ + W ++P ++  + F+     PN    L G + R P + G+PIR  KLV     G
Sbjct: 61  VTPSDVRWQSWPADSASEHFLRRDKMPNTEAFLAGTIARSPFVAGEPIREVKLVKPNGSG 120

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVLS 172
            ++++LP G RA + +IS  ++ GG I PND VDV++ +              T T +L+
Sbjct: 121 FMAAILPTGMRAVSTEISPETSAGGFILPNDKVDVILTKRDKSSDIPGAKDTVTSTTILT 180

Query: 173 NIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           N+RV+AID        + V+VG TATLELT  QA+ L  A+    LSL LRSIAD    +
Sbjct: 181 NVRVLAIDQLPKEREGQNVVVGKTATLELTGDQAEVLTRARQSGTLSLALRSIADARVVA 240

Query: 231 SEDSDVWDVQEEGKEIQIIKA 251
                     +  K+I + + 
Sbjct: 241 EA------SDQGDKQITVYRG 255


>gi|260461950|ref|ZP_05810195.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
 gi|259032197|gb|EEW33463.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
          Length = 271

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 91/267 (34%), Positives = 140/267 (52%), Gaps = 12/267 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58
           M  +RL+ + V+   A  AG +A  +V+P   Q   +           +VL+  GD+A+G
Sbjct: 1   MPASRLIILSVAVAAAGGAGYVAKNMVAPPPAQIVVDSGPKAPAVALQDVLVLSGDVAMG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +  N + W  +P + +   FI     P+A+++L G + RV +  G+P+R  KL+  G 
Sbjct: 61  NQL-ENNIAWQPWPADGINPNFITKATAPDALEKLKGSIARVGMYAGEPVRRSKLIGEGQ 119

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNI 174
             +SS+LP G RA    IS  ++ GG I PND VDV+M R               +L NI
Sbjct: 120 SFMSSILPSGMRAVATTISADTSAGGFILPNDFVDVIMTRRADANSGSTGFNTETILKNI 179

Query: 175 RVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230
           RV+AID  I  DE   +  VG TATLELTP QA+ +  AQ +A +L+L LR+I D    +
Sbjct: 180 RVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTLALRAITDTQEKN 239

Query: 231 SEDSDVWDVQEEGK-EIQIIKAGVIVN 256
            +++D        K  +++IK+G +  
Sbjct: 240 VDEADYLVSGNGRKGTVRLIKSGEVSE 266


>gi|227819322|ref|YP_002823293.1| CpaB pilus assembly protein [Sinorhizobium fredii NGR234]
 gi|227338321|gb|ACP22540.1| CpaB pilus assembly protein [Sinorhizobium fredii NGR234]
          Length = 352

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 110/257 (42%), Gaps = 8/257 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ + ++ ++V+ + AL A       ++    +          +   V ++   +  G  
Sbjct: 21  MRSSTMISLIVALLLALGAVFATRSFLADQQARLVSANAPKAEERTLV-VAAKPMRFGDR 79

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           V    L+ + +P E   +G    +       + +       I  G+P+   K+   G   
Sbjct: 80  VRSENLKAIPWPSEERPEGSFQTLEAVLG-DDTEPRYAMEAIDPGEPVLTSKITGTGERA 138

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNIR 175
            LS+ L +G +A ++ ++    V G ++P+D VDV++ R      +  +  V V+L  ++
Sbjct: 139 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRQQNNSEQTYVDVLLQGVK 198

Query: 176 VIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+A+D   D   +   +  T T E+T  +A+ L    S+  LSL LR+IA  N   +   
Sbjct: 199 VLAVDQTADERKDEPSIVKTVTFEVTTDEAQRLTLGASIGTLSLTLRNIASSNVEQTRPI 258

Query: 235 DVWDVQEEGKEIQIIKA 251
            V D+        + K+
Sbjct: 259 TVADLGGGLISADLAKS 275


>gi|89068016|ref|ZP_01155433.1| CpaB family protein [Oceanicola granulosus HTCC2516]
 gi|89046255|gb|EAR52312.1| CpaB family protein [Oceanicola granulosus HTCC2516]
          Length = 281

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 5/256 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A  +A   +     Q   E  +       + V      +  G
Sbjct: 1   MRAVFGLVLIVGVGLAGFAVYMAQGYLQDTQAQLARERAVAAQATPTVEVYAVTRQIGYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117
             +TP+ +  V + E  + DG      +     +    +V  P+   +P+   K+ +   
Sbjct: 61  EQLTPDDVTLVKYAEPFLPDGVFRAEEELFPEGDTQLRVVLRPMEVNEPVLAVKVTEPGE 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRV 176
           + G++S L +G RA  + + ++S V G ++P D VD+      S   +    ++ SN+ +
Sbjct: 121 DAGITSRLGRGMRAFAIRVDVASGVSGFLRPGDKVDIYWTGRNSRGGEEVTKLIESNVNL 180

Query: 177 IAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           IAID + D       +  T T+E+TP Q  AL  AQS  +LSL L    D   + + + D
Sbjct: 181 IAIDQSADGSALNTTIARTVTVEITPQQVAALAQAQSTGRLSLSLVGTNDDTVAEAIEVD 240

Query: 236 VWDVQEEGKEIQIIKA 251
              +    ++ Q+++A
Sbjct: 241 QRRLLGIPEQQQVVEA 256


>gi|190889880|ref|YP_001976422.1| pilus assembly protein [Rhizobium etli CIAT 652]
 gi|218509313|ref|ZP_03507191.1| pilus assembly protein [Rhizobium etli Brasil 5]
 gi|190695159|gb|ACE89244.1| pilus assembly protein [Rhizobium etli CIAT 652]
 gi|327194695|gb|EGE61541.1| pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 271

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 115/267 (43%), Positives = 163/267 (61%), Gaps = 6/267 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ V A +AG++AMR+     V T+          +NVL+S G+LAVG  
Sbjct: 1   MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIEKEPTVNVLVSSGNLAVGQR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + W+A+P+  V  G I ++ +P+A+++L G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LEEGSVHWMAWPQGGVVPGLITEIEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR  +E  K     VLSN+RV+AI
Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180

Query: 180 DHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235
           D  I   D   + +VG+TATLELTP Q K L  AQ +A +LSL LRS+AD     +  +D
Sbjct: 181 DQQIQEKDDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240

Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDGEG 261
                + G   IQ+IK+G IV   G  
Sbjct: 241 YLLSGDNGSAIIQVIKSGSIVTDAGAA 267


>gi|260776716|ref|ZP_05885611.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607939|gb|EEX34204.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 247

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 110/252 (43%), Gaps = 19/252 (7%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   ++  ++S  F L A   A + +        EV        +    +  ++  G V+
Sbjct: 3   RNQVILLFLLSIAFGLGAVFFAKQWMDRQLQPQTEVEVVEREPVVV---AAQEIPAGSVI 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
               L      ++        D  Q  + +EL G +V   I  G+ I   +L   G G  
Sbjct: 60  GEQHLTSKLLEKDW------RDEFQFTSSEELIGQVVATSIFPGEIINQNRLTVPGEGST 113

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L++L+P+ KRA T+ ++    V G + P + VD++     SE   + + VL +I+V+A+D
Sbjct: 114 LAALIPENKRAVTIRVNDVIGVAGFLLPGNKVDILSTVKYSETSASTSTVLKDIKVLAVD 173

Query: 181 HNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
               + D + ++    TLE+TP QA+ L+ A+S  ++ L LR+  +   +          
Sbjct: 174 QTARTKDNKPIIVRAVTLEVTPRQAEKLLTARSKGEIQLTLRNPHEEEKA--------VK 225

Query: 240 QEEGKEIQIIKA 251
           +     + IIK 
Sbjct: 226 RYVAPSVTIIKG 237


>gi|167624206|ref|YP_001674500.1| SAF domain-containing protein [Shewanella halifaxensis HAW-EB4]
 gi|167354228|gb|ABZ76841.1| SAF domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 270

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 16/250 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ +++S VF + A  +A   +           TE      NV+    ++ +G +
Sbjct: 1   MNNKTVLFVILSLVFGVTAVYLAQSWLKS------NTQTETVGTTSNVITMVTEVPLGTI 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +    L     PE  V  G I D+       E +G +V+  + +G+ +R E+L  +G G 
Sbjct: 55  IERKHLALTPVPENLVPKGAITDI------TEAEGQVVKHRLYQGEVLRKERLTPKGEGS 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+SL+    RA T+ ++    V G + P + VD++ +   S       +VLSN++++AI
Sbjct: 109 TLASLITPTMRAVTIRVNDVVGVAGFLLPGNRVDIINIFKSS--GLKTDIVLSNVKILAI 166

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D    +DE + ++    TLEL+  QA+ L+ A+S   L L LR+  D       + D  D
Sbjct: 167 DQKASNDENKPVLVRAVTLELSLEQAEVLMIAKSRGSLQLALRNPNDTAVIELAEIDEPD 226

Query: 239 VQEEGKEIQI 248
             E      I
Sbjct: 227 EDEVEISENI 236


>gi|323491531|ref|ZP_08096710.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
 gi|323314107|gb|EGA67192.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
          Length = 247

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 108/252 (42%), Gaps = 19/252 (7%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   ++  ++S  F L A   A + +        EV        +   I+  ++  G V+
Sbjct: 3   RNQVILLFLLSIAFGLGAVFFAKQWMDNQLQPQTEVEVVEREPVV---IAAQEIPAGTVI 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
               +         + +       Q  A ++L G +V   +  G+ + + +L ++G G  
Sbjct: 60  EEQHIT------NKLLEKAWRSESQFTASEDLIGQVVASNVYPGEILHISRLANQGEGST 113

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L+SL+P+ KRA T+ ++    V G + P + VDV+      +       VL  I+V+A+D
Sbjct: 114 LASLIPENKRAVTIRVNDVIGVAGFLLPGNKVDVLNTIKYGKNSANTVTVLKEIKVLAVD 173

Query: 181 HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
               + E + ++    TLE++P QA+ L++AQS   + L LR+  +              
Sbjct: 174 QTARTKENKPIIVRAVTLEVSPRQAEKLLSAQSRGDIQLALRNPHEEEKV--------VK 225

Query: 240 QEEGKEIQIIKA 251
           +     + IIK 
Sbjct: 226 RYVAPSVTIIKG 237


>gi|319785609|ref|YP_004145085.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171497|gb|ADV15035.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 270

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 90/266 (33%), Positives = 140/266 (52%), Gaps = 11/266 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP-AKFINVLISKGDLAVGM 59
           M  +RL+ + V+   A  AG +A  +V+P      +   + P     +VL+  GD+ +G 
Sbjct: 1   MPASRLIILSVAVAAAGGAGYVAKNMVAPPPQVVVDSAPQAPAVALQDVLVLSGDVPMGS 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +  N + W ++P + V   FI    +P A+ +L G + RV +  G+P+R  KL+  G  
Sbjct: 61  PIQ-NNIAWQSWPADGVNANFITRTAEPEALDKLKGSIARVAMYAGEPLRRSKLIGEGQS 119

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNIR 175
            +SS+LP G RA    IS  ++ GG I PND VDV+M R               +L NIR
Sbjct: 120 FMSSILPSGMRAVATAISADTSAGGFILPNDFVDVIMTRRADAASGAAGFNTETILKNIR 179

Query: 176 VIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSS 231
           V+AID  I  DE   +  VG TATLELTP QA+ +  AQ +A +L+L LR++AD    + 
Sbjct: 180 VLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTLALRAVADTQEKNV 239

Query: 232 EDSDVWDVQEEGK-EIQIIKAGVIVN 256
            ++D        +  +++IK+G +  
Sbjct: 240 GEADYLVSGNGRRGTVRLIKSGEVSE 265


>gi|258405292|ref|YP_003198034.1| Flp pilus assembly protein CpaB [Desulfohalobium retbaense DSM
           5692]
 gi|257797519|gb|ACV68456.1| Flp pilus assembly protein CpaB [Desulfohalobium retbaense DSM
           5692]
          Length = 295

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 104/245 (42%), Gaps = 13/245 (5%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQT--EEVITENPAKFINVLISKGDLAVGM 59
           +L  L+ I ++ V A+   +     +     +    E   E       V+++  D++ G 
Sbjct: 3   RLRALIPIALALVIAIAGSVFIYNWMQEQTTRQDTVEKAREKAPSTQEVVVAALDISAGS 62

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-- 117
            +T  +L+   + ++N+  G   D        +L G +   P  K +PI   +L      
Sbjct: 63  QLTEEMLQTGQYLKKNLPPGSFTDPD------QLLGRVALAPFKKNEPIVDHRLAPTDIK 116

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRV 176
           +GG+S+L+ KG RA ++  +    + G + P   VDV++        +     +L N+++
Sbjct: 117 SGGVSALISKGNRAVSLGGNKVLGISGFVLPGSRVDVMVTWNDPDSGEQITKRILDNVKI 176

Query: 177 IAIDHNIDSDER--VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           +A    +   E          TLE+TP +A+ L   ++   L + LR+  D  P  ++ +
Sbjct: 177 LATSTKMQETESGGTAPVDVYTLEVTPEEAEILTHIRNQGSLQMALRNPTDNEPVMTDGA 236

Query: 235 DVWDV 239
              D 
Sbjct: 237 TAKDS 241


>gi|269966891|ref|ZP_06180964.1| putative pilus assembly protein [Vibrio alginolyticus 40B]
 gi|269828558|gb|EEZ82819.1| putative pilus assembly protein [Vibrio alginolyticus 40B]
          Length = 251

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 112/253 (44%), Gaps = 17/253 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   +M +++S VF L A +IA + +   +  T E+      +   VL++  +L  G ++
Sbjct: 3   RTQVIMLLLLSIVFGLAAVLIAKQWMDGRNQPTVEL---EEVERHPVLVAAMELEPGTIL 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120
           +   L       + +      D       ++  G +V   I  G+ +   +L        
Sbjct: 60  SEKHLSTKLMEVDWI------DDETLKVKEQALGRIVANTIYAGELVNPHRLALPGEGAT 113

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAI 179
           L++L+P+ KRA T+ ++    V G + P + VDV+        +  T   VL NI V+A+
Sbjct: 114 LAALIPENKRAITIRVNDVIGVAGFLLPGNKVDVLNTVSYGQGKNATTKTVLKNINVLAV 173

Query: 180 DHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D     +D + ++    TLE+TP +A+ L++A S   + L LR+  +++        V  
Sbjct: 174 DQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGDIQLALRNPHEVDKPV-----VAR 228

Query: 239 VQEEGKEIQIIKA 251
                  + IIK 
Sbjct: 229 KYTPRPSVTIIKG 241


>gi|294140773|ref|YP_003556751.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12]
 gi|293327242|dbj|BAJ01973.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12]
          Length = 270

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 120/266 (45%), Gaps = 16/266 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ +++S  F +VA  +A   +  +        T  P     V+     + +G +
Sbjct: 1   MNNKTMLFVLLSLAFGVVAVFLAQSWLESNS------ETGGPENTSTVITMATLVPLGAI 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +    L+    P+  + +  I         +E +G++V+  +  G+ +R E+++ +G G 
Sbjct: 55  LERKHLKLTPMPKSVIPETAIKT------FEEAEGMVVKHNLYTGEILRSERIIKKGEGS 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+SL+    RA T+ ++    V G + P + VDV+ +           +VL+N++++AI
Sbjct: 109 TLASLISPNMRAVTIRVNDVVGVAGFLLPGNRVDVLNLFKKD-GALHTDIVLANVKILAI 167

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D    +DE +  +    TLEL+  QA+ L+ A+   KL L LR+  D         +  +
Sbjct: 168 DQRSSNDENKPKLVRAVTLELSLEQAEILLIAKGRGKLQLALRNPNDSAEVELALINETE 227

Query: 239 VQEEGKEIQIIKAG-VIVNKDGEGIS 263
            +E+     ++ A   IV    E  S
Sbjct: 228 KREKRPVSNMVMAPKKIVRVSSESKS 253


>gi|326388865|ref|ZP_08210447.1| Flp pilus assembly CpaB [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206465|gb|EGD57300.1| Flp pilus assembly CpaB [Novosphingobium nitrogenifigens DSM 19370]
          Length = 347

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 130/267 (48%), Gaps = 19/267 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +L+ +V + +FA+   + A  L++        +          VL+++  L VG +
Sbjct: 1   MDRKKLILLVGALIFAIATSLAARALLTGGSTPQA-IAAAKVLDGPKVLVAQRALPVGTI 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +T + + + A+P++ V D +         MQ+L G +VR PI  G PI    LV  G+ G
Sbjct: 60  ITADAVSYQAWPKDLVQDAYFLQDKT--DMQKLLGTVVRNPITAGQPITTGSLVAPGDRG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNI 174
            L++ L  G RA T+ +S  + V G + P DHVD+++ +S+     +        +L N+
Sbjct: 118 FLAAALGPGMRAVTIPVSTRTGVAGFVFPGDHVDLLLTQSVKGDGESQALKATETILKNL 177

Query: 175 RVIAIDHNIDSD-----ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD---- 225
           RV+A D + D +      RV   S  T+E TP  A+ L  A+S+  +SL LRSIAD    
Sbjct: 178 RVLATDQSTDQETVDGHTRVKGFSLVTVEATPKIAEELAVAESIGTISLSLRSIADNSSE 237

Query: 226 -LNPSSSEDSDVWDVQEEGKEIQIIKA 251
                +S          + +E ++IKA
Sbjct: 238 LEQAVASGQVKFPAGASKAEEDRLIKA 264


>gi|126725968|ref|ZP_01741810.1| CpaB family protein [Rhodobacterales bacterium HTCC2150]
 gi|126705172|gb|EBA04263.1| CpaB family protein [Rhodobacterales bacterium HTCC2150]
          Length = 284

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 105/257 (40%), Gaps = 9/257 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58
           M+L     +V     A  A  +A   +  +       +   +N  +   V ++   L  G
Sbjct: 1   MRLVFGAVLVAGVGLAGFAVNMAQDRIGQYQSALAASQANAQNKVELKTVFVASKTLDYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117
            ++T   +     P +++ +G                  +   + + + +   K+     
Sbjct: 61  DMLTEEDVREAMVPVDSIPEGAFMAKADLFDENPNKPRQILRLMTENEILLAYKVTKPGE 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTVVLS 172
             G+++LL  G RA ++ +  ++ V G++  +DHVDV      ++           ++ +
Sbjct: 121 EAGVATLLTPGMRAFSIRVDDTTGVAGLLNADDHVDVYWTGGKADGLGNRDGGVTKLIQA 180

Query: 173 NIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           N++++AID + D          T T+E++P Q  +L  AQ+  KLSL L  I+D   +  
Sbjct: 181 NVKLVAIDDSADKQRSSSRSARTVTVEVSPQQVASLAQAQNSGKLSLSLVGISDDIVALV 240

Query: 232 EDSDVWDVQEEGKEIQI 248
           E+ D   +    + + +
Sbjct: 241 EEVDQNRLLGVQETVVV 257


>gi|300704929|ref|YP_003746532.1| pilus assembly (cpab), transmembrane protein [Ralstonia
           solanacearum CFBP2957]
 gi|299072593|emb|CBJ43943.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia
           solanacearum CFBP2957]
          Length = 284

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/256 (25%), Positives = 124/256 (48%), Gaps = 30/256 (11%)

Query: 1   MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R++  ++++ +  L A + A R +S                   V+++  D+ +G 
Sbjct: 1   MKNLRILSMLLIATIAGLAAVVFASRWLSQQSNSGI----------TKVVVAAADIDLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            ++P+ ++ V +P  ++  G I D H  +      G +VR  +++G+P+   KL  +   
Sbjct: 51  RLSPDFIKTVDWPSASLPPGAISDTHALD------GRVVRTSLIRGEPVLESKLTPQGTA 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-----------MVRSLSERKPTV 167
           GGLS+++  GKRA T+ ++    V G   P  +VD++                   +   
Sbjct: 105 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTIQDSKDAKATGGDRADQSIS 164

Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            +VL  I V+A+   ++ D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D 
Sbjct: 165 KIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVDP 224

Query: 227 NPSSSEDSDVWDVQEE 242
           +P+ +  +    + +E
Sbjct: 225 HPADTAGATKRTLLKE 240


>gi|300021853|ref|YP_003754464.1| Flp pilus assembly protein CpaB [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523674|gb|ADJ22143.1| Flp pilus assembly protein CpaB [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 267

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 135/269 (50%), Gaps = 14/269 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  +L+G  V+   A +A  IA   ++P       V  E       VL++  D++VG +
Sbjct: 1   MKRAQLVGFSVAFAAAALAYYIASAFMTPPKT----VTVEKQVDSTEVLVAATDISVGQI 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQ-PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           V      W  +P+  V   ++   +  P    E  G + R  IL G+P+  +KL+  G G
Sbjct: 57  VNEGNFHWATWPKSAVTADYVTKANSGPGKAHEFTGAVARSAILSGEPVTTQKLIKAGQG 116

Query: 120 G-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNI 174
           G L+++LP+G RA +  I   +A G +I PNDHVDV+++R       + +     +  N+
Sbjct: 117 GVLAAILPQGMRAISTKIKAETAAGSLILPNDHVDVILIRHVRSRSGQEETVADTLFRNV 176

Query: 175 RVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           RV+AI   I++ +         STATLEL P QA+ +  A S+ +++L LRS+ADL+   
Sbjct: 177 RVMAIGQQIETKDGKKSADISASTATLELMPKQAEMMALANSMGEITLSLRSVADLSSDP 236

Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259
               ++   + +   ++I++ G      G
Sbjct: 237 ERAGNLDLNKPQNNSVRIVRYGAKSRVYG 265


>gi|269962016|ref|ZP_06176371.1| hypothetical protein VME_27550 [Vibrio harveyi 1DA3]
 gi|269833339|gb|EEZ87443.1| hypothetical protein VME_27550 [Vibrio harveyi 1DA3]
          Length = 251

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 114/253 (45%), Gaps = 17/253 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   +M +++S VF L A +IA + +   +  T E+      +   VL++  +L  GMV+
Sbjct: 3   KTQVVMLLLLSIVFGLAAVLIAKQWIDGQNQPTVEL---EEIERHPVLVAAMELEPGMVL 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120
               L       + +      +       ++  G +V   I  G+ +   +L        
Sbjct: 60  EEKHLTTKLMEVDWI------EEDTLKVSEQALGRIVANTIYSGEMVNPNRLALPGEGAT 113

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAI 179
           L++L+P+ KRA T+ ++    V G + P + VD++    S   +  +   VL NI+V+A+
Sbjct: 114 LAALIPENKRAITIRVNDVIGVAGFLLPGNKVDILNTISSGKGKSASTKTVLKNIKVLAV 173

Query: 180 DHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D     +D + ++    TLE+TP +A+ L++  S  K+ L LR+  +++        V  
Sbjct: 174 DQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSENSKGKIQLALRNPHEVDKPP-----VAR 228

Query: 239 VQEEGKEIQIIKA 251
                  + IIK 
Sbjct: 229 KYTPRPSVTIIKG 241


>gi|254229331|ref|ZP_04922748.1| Flp pilus assembly protein CpaB [Vibrio sp. Ex25]
 gi|262393416|ref|YP_003285270.1| flp pilus assembly protein RcpC/CpaB [Vibrio sp. Ex25]
 gi|151938139|gb|EDN56980.1| Flp pilus assembly protein CpaB [Vibrio sp. Ex25]
 gi|262337010|gb|ACY50805.1| flp pilus assembly protein RcpC/CpaB [Vibrio sp. Ex25]
          Length = 251

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 112/253 (44%), Gaps = 17/253 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   +M +++S VF L A +IA + +   +  T E+      +   VL++  +L  G ++
Sbjct: 3   RTQVIMLLLLSIVFGLAAVLIAKQWMDGRNQPTVEL---EEVERHPVLVAAMELEPGTIL 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120
           +   L       + +      D       ++  G +V   I  G+ +   +L        
Sbjct: 60  SEKHLSTKLMEVDWI------DDETLKVQEQALGRIVANTIYAGELVNSNRLALPGEGAT 113

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAI 179
           L++L+P+ KRA T+ ++    V G + P + VDV+        +  T   VL NI V+A+
Sbjct: 114 LAALIPENKRAITIRVNDVIGVAGFLLPGNKVDVLNTVSYGQGKNATTKTVLKNINVLAV 173

Query: 180 DHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D     +D + ++    TLE+TP +A+ L++A S   + L LR+  +++        V  
Sbjct: 174 DQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGDIQLALRNPHEVDKPV-----VAR 228

Query: 239 VQEEGKEIQIIKA 251
                  + IIK 
Sbjct: 229 KYTPRPSVTIIKG 241


>gi|299067806|emb|CBJ39017.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia
           solanacearum CMR15]
          Length = 295

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 118/259 (45%), Gaps = 33/259 (12%)

Query: 1   MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R++  ++++ +  L A + A R +          I +  +    V ++  D+ +G 
Sbjct: 8   MKNLRILSMLLIATIAGLAAMLFASRWL----------IQQGNSGTTKVAVAAVDVNLGQ 57

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            ++P  +  V +P  ++  G I D H  +      G + R  +  G+P+   KL      
Sbjct: 58  RLSPEFIRLVDWPAASLPPGAISDEHAID------GRVTRTSLSPGEPVLESKLTPVGTK 111

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--------------ERK 164
           GGLS+++  GKRA T+ ++    V G   P  +VD+++                   E  
Sbjct: 112 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQEAPDGKPAKGAQADREEH 171

Query: 165 PTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
               +VL  I V+A+   ++ DE +  V +  TLE+TP +A+ L  A+SV  LSLVLR+ 
Sbjct: 172 SISKIVLEKILVLAVAQEVNRDETKPKVVNAVTLEVTPDEAEKLDLARSVGTLSLVLRNQ 231

Query: 224 ADLNPSSSEDSDVWDVQEE 242
            D  P  +  +    + +E
Sbjct: 232 VDPRPVDTAGATKSTLLKE 250


>gi|83749639|ref|ZP_00946622.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN; cpaB1 [Ralstonia solanacearum
           UW551]
 gi|207728107|ref|YP_002256501.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2]
 gi|207744157|ref|YP_002260549.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609]
 gi|83723700|gb|EAP70895.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN; cpaB1 [Ralstonia solanacearum
           UW551]
 gi|206591352|emb|CAQ56964.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2]
 gi|206595561|emb|CAQ62488.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609]
          Length = 284

 Score =  159 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/256 (25%), Positives = 124/256 (48%), Gaps = 30/256 (11%)

Query: 1   MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R++  ++++ +  L A + A R +S                   V+++  D+ +G 
Sbjct: 1   MKNLRILSMLLIATIAGLAAVVFASRWLSQQSSSGI----------TKVVVAAADIDLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            ++P+ ++ V +P  ++  G I D H  +      G +VR  +++G+P+   KL  +   
Sbjct: 51  RLSPDFIKTVDWPSASLPPGAISDTHALD------GRVVRTSLIRGEPVLESKLTPQGTA 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-----------MVRSLSERKPTV 167
           GGLS+++  GKRA T+ ++    V G   P  +VD++                   +   
Sbjct: 105 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTIQDSKDAKATGGDRADQSIS 164

Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            +VL  I V+A+   ++ D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D 
Sbjct: 165 KIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVDP 224

Query: 227 NPSSSEDSDVWDVQEE 242
           +P+ +  +    + +E
Sbjct: 225 HPADTAGATKRTLLKE 240


>gi|153834044|ref|ZP_01986711.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01]
 gi|148869599|gb|EDL68589.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01]
          Length = 251

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 115/255 (45%), Gaps = 18/255 (7%)

Query: 1   MKLTRL-MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M  T++ M +++S VF L A +IA + +   +  T E+      +   VL++  +L  G 
Sbjct: 1   MSKTQIVMLLLLSIVFGLAAVLIAKQWIDGQNQPTVEL---EEVERHPVLVAAMELEPGT 57

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
           ++    L       + +      +       ++  G +V   I  G+ +   +L      
Sbjct: 58  ILEEKHLTTKLMEVDWI------EESTLKVSEQALGRIVANTIYSGEMVNPNRLALPGEG 111

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVI 177
             L++L+P+ KRA T+ ++    V G + P + VD++    S   +  +   VL NI+V+
Sbjct: 112 ATLAALIPENKRAITIRVNDVIGVAGFLLPGNKVDILNTISSGKGKSASTKTVLKNIKVL 171

Query: 178 AIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           A+D     +D + ++    TLE+TP +A+ L++  S  K+ L LR+  +++        V
Sbjct: 172 AVDQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSENSKGKIQLALRNPHEVDKPV-----V 226

Query: 237 WDVQEEGKEIQIIKA 251
                    + IIK 
Sbjct: 227 ARRYTPRPSVTIIKG 241


>gi|241207156|ref|YP_002978252.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861046|gb|ACS58713.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 271

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 111/267 (41%), Positives = 160/267 (59%), Gaps = 6/267 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ V A +AG++AM++     V T+          +N+L+S G+L+VG  
Sbjct: 1   MKPARLIILAVAVVAAGLAGLLAMQMAGSGGVVTQVRSVVEKEPTVNILVSSGNLSVGAR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + W+A+P+  V  G I +  +P+A+++L G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LDDQAVHWMAWPQGGVVPGLITETDKPDAIKDLQGAVVRLPIFEGEPIRPEKIADSSSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVTVVLSNIRVIAI 179
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR      K     VLSN+RV+AI
Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGAEADKLITETVLSNVRVLAI 180

Query: 180 DHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235
           D  I   D   + +VG+TATLELTP Q K L  AQ +A +LSL LRS+AD     +  +D
Sbjct: 181 DQQIQEKDDGSKSVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240

Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDGEG 261
                + G   IQ+IK+G IV   G  
Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDAGAA 267


>gi|28899194|ref|NP_798799.1| putative pilus assembly protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836767|ref|ZP_01989434.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ3810]
 gi|260361568|ref|ZP_05774595.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus K5030]
 gi|260876725|ref|ZP_05889080.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AN-5034]
 gi|260898196|ref|ZP_05906692.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus Peru-466]
 gi|260900396|ref|ZP_05908791.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ4037]
 gi|28807418|dbj|BAC60683.1| putative pilus assembly protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749913|gb|EDM60658.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ3810]
 gi|308089099|gb|EFO38794.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus Peru-466]
 gi|308091466|gb|EFO41161.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AN-5034]
 gi|308109142|gb|EFO46682.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ4037]
 gi|308114026|gb|EFO51566.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus K5030]
 gi|328474269|gb|EGF45074.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 10329]
          Length = 251

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 113/255 (44%), Gaps = 17/255 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   +M +++S VF L A +IA + +   +  T E+      +   V+++  +L  G ++
Sbjct: 3   RTQVIMLLLLSIVFGLAAVLIAKQWMDGRNQPTVEL---EEVERHPVVVATMELEPGTIL 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120
               L       + +      D       ++  G +V   I  G+ +   +L        
Sbjct: 60  DEKHLTTKLMEVDWI------DDETLKVPEQALGRIVANTIYAGELVNPNRLAQPGEGAT 113

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAI 179
           L++L+P+ KRA T+ ++    V G + P + VDV+        ++ T   VL NI V+A+
Sbjct: 114 LAALIPENKRAVTIRVNDVIGVAGFLLPGNKVDVLSTVSYGKGKQATTLTVLKNINVLAV 173

Query: 180 DHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D     +D + ++    TLE+TP +A+ L++A S  ++ L LR+  +++        V  
Sbjct: 174 DQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGEIQLALRNPHEVDKPV-----VAK 228

Query: 239 VQEEGKEIQIIKAGV 253
                  + IIK   
Sbjct: 229 KYTPRPSVTIIKGSQ 243


>gi|254506783|ref|ZP_05118923.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16]
 gi|219550364|gb|EED27349.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16]
          Length = 233

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 11/238 (4%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
           F L A   A + +        E+      +   V+I+  ++  G  +    +       E
Sbjct: 2   FGLGAVFFAKQWMDRQLQPQTEL---EVVEREPVIIASQEIPAGTPIEEQHITTKLLEVE 58

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAAT 133
              +G   D +       + G +V   I  G+ +   +L   G G  L+SL+P+ KRA T
Sbjct: 59  WRNEGQFTDQN------AILGQVVATTIFPGEVLHQNRLTVPGEGSTLASLIPENKRAVT 112

Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVG 192
           + ++    V G + P + VDV+     S        VL +I+V+A+D    + E + ++ 
Sbjct: 113 IRVNDVIGVAGFLLPGNRVDVLNTIKYSATSANTVTVLKDIKVLAVDQTARTKENKPIIV 172

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
              TLE++P  A+ L+ A+S  ++ L LR+  +      +         +G E   I+
Sbjct: 173 RAVTLEVSPKDAEKLLTARSKGEIQLTLRNPHEEEKVVKKYVAPSVTILKGTESSNIR 230


>gi|303248301|ref|ZP_07334563.1| Flp pilus assembly protein CpaB [Desulfovibrio fructosovorans JJ]
 gi|302490326|gb|EFL50238.1| Flp pilus assembly protein CpaB [Desulfovibrio fructosovorans JJ]
          Length = 304

 Score =  158 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 114/251 (45%), Gaps = 16/251 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   +  ++++ + A+ AG++ +R +       +    +  AK ++VL++   +  G  
Sbjct: 1   MKSKAIPHMILAVILAVAAGVLTIRWLGSVRGPGQAQRPKVEAKKVDVLVAARAIPKGAR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR--GN 118
           +   +L    +  E V  G +       A+ E +G +    I K DPI  +KL+ +    
Sbjct: 61  LDAAMLRLKPYEAEAVPGGALR------AVAEAEGRVAARDISKDDPITPDKLMAKGVTR 114

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRV 176
           GGL + +  GKRA T+  +     GG++ P   VDVV+       + +    V+L NI V
Sbjct: 115 GGLDAAVAPGKRAVTVKGTKVMGSGGLVTPGSRVDVVVTYSRPGKQEEKVSKVILENIPV 174

Query: 177 IAIDHNIDS----DERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           +A    ++     D R  + ST   TL +TP +A+ L  A  +  + + LR   D +   
Sbjct: 175 LATGTELEPRIGKDGREELASTDSFTLMVTPEEAERLALAADLGSMHMALRKPGDDDVVK 234

Query: 231 SEDSDVWDVQE 241
           +  +DV    E
Sbjct: 235 TPGADVAGSLE 245


>gi|87199102|ref|YP_496359.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444]
 gi|87134783|gb|ABD25525.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444]
          Length = 342

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 128/250 (51%), Gaps = 14/250 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +LM +V + + A+     A  L + +     E   + P     VL+++  L VG +
Sbjct: 1   MDKRKLMLLVGALIVAIGTAFAARSLFAGNSTPQAEAAAKVPTGP-KVLVAQRALPVGTI 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +T + + + A+P++ V D +  +      MQ+L G +VR PI  G+P+    LV  G+ G
Sbjct: 60  ITADSINFQAWPKDMVQDAYFVEGEA--DMQKLLGTVVRNPITAGEPVTKGNLVAPGDRG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVLSNI 174
            L++ L  G RA T+ +S  + V G + P DH+D+V+ +++              +L N+
Sbjct: 118 FLAAALGAGMRAVTIPVSARTGVAGFVFPGDHIDLVLTQTVKGTGEGMALKASETILKNL 177

Query: 175 RVIAIDHNIDSDE-----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           RV+A D + + ++     RV   ST TLE+TP  A+ +  AQ++  +SL LRS+AD +  
Sbjct: 178 RVLATDQSTEQEQVEGKTRVRTFSTVTLEVTPKIAEKIAVAQTIGTISLSLRSLADNSAE 237

Query: 230 SSEDSDVWDV 239
             +     DV
Sbjct: 238 LEQAIAAGDV 247


>gi|323137424|ref|ZP_08072502.1| Flp pilus assembly protein CpaB [Methylocystis sp. ATCC 49242]
 gi|322397411|gb|EFX99934.1| Flp pilus assembly protein CpaB [Methylocystis sp. ATCC 49242]
          Length = 267

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 11/242 (4%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
             M   S    Q   V+   P     VL++  DL  G  +    + WV +P+ +V  G +
Sbjct: 20  FMMMNSSSPPPQAPVVVAPPPMNTEQVLVATRDLTYGTEIVDQDMAWVEWPKTSVPVGSL 79

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL-SSLLPKGKRAATMDISISS 140
                PNA +E+    VR+PI  G+PIR ++L+     GL S++L  GKRA  +D+++++
Sbjct: 80  TKTESPNAQEEVKSSYVRIPIAGGEPIRKDRLIKGVTAGLMSTMLSPGKRAIAIDVTLNN 139

Query: 141 AVGGMIKPNDHVDVVMVRSLSE-------RKPTVTVVLSNIRVIAIDHNID--SDERVLV 191
             GG I PND VDV+     +E             VVLSN+RV+A+   I+    E V+ 
Sbjct: 140 TAGGFILPNDRVDVLRTYRDTEATKDLGHEVYNSEVVLSNVRVLAMGQTIEKKGAEPVVT 199

Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           GSTATLEL P QA+ +V AQ   +L L LR I D   +    ++          + +++ 
Sbjct: 200 GSTATLELDPRQAELVVLAQRTGQLVLSLRPITD-AINKDAAAEAPADPGSDDSLTVVRH 258

Query: 252 GV 253
           GV
Sbjct: 259 GV 260


>gi|90406751|ref|ZP_01214944.1| Flp pilus assembly protein CpaB [Psychromonas sp. CNPT3]
 gi|90312204|gb|EAS40296.1| Flp pilus assembly protein CpaB [Psychromonas sp. CNPT3]
          Length = 286

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 108/267 (40%), Gaps = 25/267 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RLM   V      + G+            T   + +   K + +L+S  ++  G +
Sbjct: 1   MTAKRLMYFSVFISLIGLLGLFM-----SVSSPTAPALIKEENKTLTILVSSQEIKSGRL 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGNG 119
            + +I  W   PE ++ +            +     +V   +  G  +     L      
Sbjct: 56  YSASIFAWKKVPESDLAEQIDYIQKIDFNNKAYKKSIVTGDLPAGHIMSQSDFLTLEDGA 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVV 170
            LS LL  G RA ++ +   +A  G+I+P DHVDV++               R   V  +
Sbjct: 116 FLSVLLRPGYRAVSVGVDHITANSGLIRPGDHVDVLLLASKEKELRSTGNETRSLYVKTI 175

Query: 171 LSNIRVIAIDHNIDSDERVLVG----------STATLELTPMQAKALVAAQSVAKLSLVL 220
           + N+RV+A++  +  D                S  TLE+ P QA  ++ A  +  LS++L
Sbjct: 176 VQNVRVLALNDALQIDRYQEEKKRNKGMLPEKSAVTLEVLPAQANTVILANQLGTLSMLL 235

Query: 221 RSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           R+ +D +  ++   D+ D+  E K++Q
Sbjct: 236 RNSSDNSILANTQVDIGDIFPEIKQVQ 262


>gi|163751743|ref|ZP_02158961.1| hypothetical Flp pilus assembly protein [Shewanella benthica KT99]
 gi|161328395|gb|EDP99554.1| hypothetical Flp pilus assembly protein [Shewanella benthica KT99]
          Length = 270

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 112/249 (44%), Gaps = 15/249 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ +++S VF +VA  +A   +  +         +       V+     + +G +
Sbjct: 1   MNNKTMLFVLLSLVFGVVAVFLAQSWLESNS------EADGLEATSTVITMATLVPLGAI 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +    L+    P   + +  I         +E +G++V+  +  G+ +R E+++ +G G 
Sbjct: 55  LERKHLKLTPMPNSVIPEAAIKT------FEEAEGMVVKHNLYSGEILRSERIIKKGEGS 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+SL+    RA T+ ++    V G + P + VDV+ +           +VL+NI+++AI
Sbjct: 109 TLASLISPNMRAVTIRVNDVIGVAGFLLPGNRVDVLNLFKKD-GSLHTDIVLANIKILAI 167

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D    +DE +  +    TLE++  QA+ L+ A+   KL L LR+  D         +   
Sbjct: 168 DQRSSNDENKPTLVRAVTLEMSLEQAETLLIAKGRGKLQLALRNPNDSAEVELALINEKQ 227

Query: 239 VQEEGKEIQ 247
            +EE   + 
Sbjct: 228 QREEISVVN 236


>gi|283852072|ref|ZP_06369346.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. FW1012B]
 gi|283572462|gb|EFC20448.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. FW1012B]
          Length = 300

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 110/252 (43%), Gaps = 16/252 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   +  ++++ + ALVAG++ +R +       E        K I VL++   LA G  
Sbjct: 1   MKSKAIPHMILAVILALVAGVLTIRWLGSVRGTGEPGKPAAETKKIEVLVAARPLAKGAR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118
           +   ++    +  E    G + D        E+ G +    I + DPI  +KL+ +G   
Sbjct: 61  LDTTMVRLKPYDPEAAPLGAMRDAS------EVVGRVTAREISQDDPITPDKLLPKGAAG 114

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRV 176
           GGL + +  GKRA T+  +     GG+I P   VDV+   +      +    V+L NI V
Sbjct: 115 GGLDASVEPGKRALTVKGTKVMGSGGLITPGCRVDVLSTYNQPGKADEKVTKVILENIPV 174

Query: 177 IAIDHN----IDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           +         +  D R  + +T   TL +TP +A+ L  A  +  + L LR   D +  +
Sbjct: 175 LTTGTEREVRVGQDGREELANTDFFTLMVTPEEAERLALASDLGNMHLALRKPGDDDVVA 234

Query: 231 SEDSDVWDVQEE 242
           +  +DV    + 
Sbjct: 235 TAGADVARSLDA 246


>gi|126737255|ref|ZP_01752990.1| CpaB family protein [Roseobacter sp. SK209-2-6]
 gi|126721840|gb|EBA18543.1| CpaB family protein [Roseobacter sp. SK209-2-6]
          Length = 285

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 107/252 (42%), Gaps = 9/252 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT--ENPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A ++A + +S H                   + ++   L  G
Sbjct: 1   MRAVFGLVLIVGVALAGGAVMMAKKYISAHQAALAHERANRAEVIPTTEIYVAVKQLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDR- 116
             +T   ++ V +P E++ +G  +   +     +     +V   I   + I   K+    
Sbjct: 61  ERLTAEAVKKVRWPTESLPEGAFEMEAELFPTAKPSDQRVVLRMIEPNEAILAVKVTKPG 120

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLS 172
            + G++S L +G RA  + + ++S V G ++P D VDV        +  +      ++ S
Sbjct: 121 EDAGITSQLQRGMRAFAIKVDVTSGVSGFLRPGDRVDVYWTGVARGASGQDGEMTRLIES 180

Query: 173 NIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +I +IA+D +  +D    ++  T T+ + P Q  AL  AQ+  +LSL L    D   +S+
Sbjct: 181 SIELIAVDQSASTDVNGAMIARTVTVAVQPEQVAALAQAQTTGRLSLSLVGAGDDTVASA 240

Query: 232 EDSDVWDVQEEG 243
            + D   +   G
Sbjct: 241 IEVDQRKLLGLG 252


>gi|260771479|ref|ZP_05880404.1| flp pilus assembly protein RcpC/CpaB [Vibrio furnissii CIP 102972]
 gi|260613605|gb|EEX38799.1| flp pilus assembly protein RcpC/CpaB [Vibrio furnissii CIP 102972]
 gi|315181061|gb|ADT87975.1| Flp pilus assembly protein CpaB [Vibrio furnissii NCTC 11218]
          Length = 249

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 104/252 (41%), Gaps = 17/252 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   ++  ++S +F L A   A + +        EV        +    +  D+    V+
Sbjct: 3   RNQVILLFLLSVLFGLGAVFFAKQWMDRQVQPQTEVEVVERVPVVV---ASRDIPASTVI 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120
               L      +  + +    +        E+ G +    I   + I  ++L        
Sbjct: 60  EEQYLTTRLLEKSWMTENQFSEP------TEVIGKIAESDIYPNEIIVAQRLSIPGEGAT 113

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L++L+P+ KRA T+ ++    V G + P + VDV+     S+     T +L +IRV+A+D
Sbjct: 114 LAALIPEDKRAVTIRVNDVIGVAGFLLPGNKVDVLNTIQYSKTSANTTTILKDIRVLAVD 173

Query: 181 HNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
                 + + ++    TLE++P +A+ L++A+S   + LVLR+        + +  V   
Sbjct: 174 QTAKTQENKPIIVRAVTLEVSPKEAEKLLSAKSKGDIQLVLRNPH------AVEEKVVRR 227

Query: 240 QEEGKEIQIIKA 251
                 + IIK 
Sbjct: 228 YVPPPSVTIIKG 239


>gi|149186254|ref|ZP_01864568.1| pilus assembly protein CpaB [Erythrobacter sp. SD-21]
 gi|148830285|gb|EDL48722.1| pilus assembly protein CpaB [Erythrobacter sp. SD-21]
          Length = 361

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 11/236 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +L+ +V + + A+   ++A  + +       +      ++   VL+++  L  G +
Sbjct: 1   MDRKKLVLLVGALIVAIGTALVARSMFAGASAPQAQAAAVVESQGPKVLVAQRALPTGTI 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +T + + +  +PEE V D +  D     +   L G +VR P+  G+P+    LV  G+ G
Sbjct: 61  ITADAIGYQLWPEELVQDAYFLDGEADVSK--LIGTVVRHPVTAGEPVTQGSLVSPGDRG 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---TVTVVLSNIRV 176
            L++ L  G RA T+ +   S V G + P D VD+V+ +++S           +L N+RV
Sbjct: 119 FLAAALTPGMRAITVPVDAKSGVAGFVFPGDRVDMVLTQAVSGEGQALKASETILRNLRV 178

Query: 177 IAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           +A D +      D   +V    T TLE+TP  A+ +  AQ++  LSL LR +AD  
Sbjct: 179 LATDQSTTQTTVDGKTQVRAFRTVTLEVTPTIAEKVAVAQTLGTLSLALRPLADSQ 234


>gi|85859140|ref|YP_461342.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
 gi|85722231|gb|ABC77174.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
          Length = 295

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 108/248 (43%), Gaps = 19/248 (7%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   L+ +  +   AL+  ++A   +     Q        P +   V+++  D+    V+
Sbjct: 3   KKKHLIFLGGAVFLALIVTLLAYNWI-----QKTATAKAKPQEMQKVVVAAFDVPWSTVL 57

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR--GNG 119
           T +++    F +E++ +G+  D        ++ G  V  PI   +PI   +L       G
Sbjct: 58  TKDMVRTATFLKESLPNGYYLDPA------QIVGRTVIQPIRTNEPITEARLAPTSIRTG 111

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176
           G+++++   KRA ++ +     V G I P + VDV++  +    +   P   +VL NI V
Sbjct: 112 GVAAVITPSKRAMSVKVDKVVGVSGYIHPGNRVDVLVTLNEQRGEVTAPVTKIVLENILV 171

Query: 177 IAID---HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           +A     +     E+       TLE+TP + + L  A +  K+ L LR+  D    ++  
Sbjct: 172 LASGPEFNETKKGEKPANVDVITLEVTPEEGEKLALASTEGKIQLALRNFGDNEAVATRG 231

Query: 234 SDVWDVQE 241
           + + ++  
Sbjct: 232 AKIPNLLG 239


>gi|149911410|ref|ZP_01900028.1| Flp pilus assembly protein CpaB [Moritella sp. PE36]
 gi|149805518|gb|EDM65523.1| Flp pilus assembly protein CpaB [Moritella sp. PE36]
          Length = 264

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 107/232 (46%), Gaps = 15/232 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ + +S +F + A +IA   +  +           P   + +  S   + +G +
Sbjct: 1   MNKKTVISVAISIMFGIGAILIAQSWLDTN-------KPSAPENQVYIAFSTMVIPIGTI 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +    ++    PE    D  + D        E+ G++ +  I   D IRLE+L+ +G G 
Sbjct: 54  IEAKHIKLKILPESMSPDNTVTDPD------EIYGMIAKDTIYIDDIIRLERLLIKGQGS 107

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+SL+ +  RA ++ +     V G + P + +D++   S +    +  V+L NI+++AI
Sbjct: 108 TLASLISENMRAVSIRVDDVVGVAGFLLPGNRIDILNTVSGNGGATSTEVILHNIKILAI 167

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           D     DE +  +    T+E+   QA+ L+ A++  +L L LR+  D +   
Sbjct: 168 DQRAAIDENKPQLVRAITVEVNLEQAEILMTARNQGRLQLALRNPTDSHAVD 219


>gi|146276365|ref|YP_001166524.1| Flp pilus assembly protein CpaB-like protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554606|gb|ABP69219.1| Flp pilus assembly protein CpaB-like protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 274

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 102/254 (40%), Gaps = 7/254 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58
           M+   ++ +++    A  A  +A   +S   V  E+           + V ++   L  G
Sbjct: 1   MRFVFVLVLLLGLGLAGSAVYMAQGYISQTQVALEKEREARKRLGPMVEVFVTNKPLNYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             ++   ++ + +P   + +    D       +      V   + K +P+   K+ +   
Sbjct: 61  APLSREDVQKILWPANALPETIFKDETALFP-ETGKPRYVLRQMEKFEPVLAVKVTEP-G 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
                 L  G RA  + + ++S V G ++P D VDV    +      T  ++   I ++A
Sbjct: 119 VEAGLRLASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGAG-ANGETTRLIEKTIPIVA 177

Query: 179 IDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           +D   ++D     ++  T T+E++P Q   L  AQ+  +LSL L    D   + +   D 
Sbjct: 178 VDQTANADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSLVGRDDTTEADAAPVDT 237

Query: 237 WDVQEEGKEIQIIK 250
             +  E   I +I+
Sbjct: 238 RILIGEPDRIVVIE 251


>gi|254255253|ref|ZP_04948569.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158]
 gi|124900990|gb|EAY71740.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158]
          Length = 323

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 23/248 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R +M +VV+ V  L A + A   +                   +V ++  DL +G 
Sbjct: 43  MKNSRAVMMLVVAMVAGLAAVVFASHWLVQTSTSAV----------TSVAVAATDLNLGE 92

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            +  N +  V++P  +V  G   D       + L+G +VR  + +G+P+   KL      
Sbjct: 93  PLGANQIHMVSWPSGSVPTGAFTD------TKALEGRVVRTSLARGEPVIESKLAPIGTK 146

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174
           GGLS+++ +G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I
Sbjct: 147 GGLSAVIAEGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 206

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ 
Sbjct: 207 LVLAVAQQVSRDDTAPKVVNAVTLEVTPEQAERLDLARSVGTLSLVLRNQIDKQTLNTDG 266

Query: 234 SDVWDVQE 241
           +    +  
Sbjct: 267 ATKLTLLG 274


>gi|218887828|ref|YP_002437149.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758782|gb|ACL09681.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 274

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 17/248 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ + L+ I ++ V ALVAG++  R +  +     ++      + + + ++  D+  G  
Sbjct: 1   MRASSLIQISLALVLALVAGVLVFRFMQVNRAAAPQM---AAPEQVELAVAAADVPRGAK 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGN 118
           +    ++   F + +   G       P       G ++   +  G+PI   +L+     +
Sbjct: 58  LAAEQIKLAPFLKSSAPSGAFTKDTLP------VGRVLSSAVAAGEPITEARLLQDGASH 111

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIR 175
           GG+S+L+  G RA  +  +    + G I+P + VDV++      R+       +VL N+R
Sbjct: 112 GGVSTLIAPGMRAVAVKGNKVLGLSGFIRPGNRVDVLVTLDDETREKSKSRTKLVLENVR 171

Query: 176 VIAIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           V+A    +  +      S+    TLE++P QA+ L  A S  +L   LR+ AD     + 
Sbjct: 172 VLATGTELKQEGDDTSTSSVDVYTLEISPPQAEPLALAASRGELHFALRNPADDGTVLTP 231

Query: 233 DSDVWDVQ 240
            +DV    
Sbjct: 232 GTDVPGTL 239


>gi|17545375|ref|NP_518777.1| pilus assembly transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17427667|emb|CAD14186.1| probable pilus assembly cpab transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 288

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 118/259 (45%), Gaps = 33/259 (12%)

Query: 1   MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R++  ++++ +  L A + A R +          I +  +    V ++  D+ +G 
Sbjct: 1   MKNLRILSMLLIATIAGLAAMLFASRWL----------IQQGNSGTTKVAVAAVDVNLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            ++P  +  V +P  ++  G I D H  +      G + R  +  G+P+   KL      
Sbjct: 51  RLSPEFIRLVDWPAASLPPGAISDEHAID------GRVTRTSLSPGEPVLESKLTPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--------------ERK 164
           GGLS+++  GKRA T+ ++    V G   P  +VD+++                   E  
Sbjct: 105 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQETPDGKPAKGAQADREEH 164

Query: 165 PTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
               +VL  I V+A+   ++ DE +  V +  TLE+TP +A+ L  A+SV  LSLVLR+ 
Sbjct: 165 SISKIVLEKILVLAVAQEVNRDETKPKVVNAVTLEVTPDEAEKLDLARSVGTLSLVLRNQ 224

Query: 224 ADLNPSSSEDSDVWDVQEE 242
            D  P  +  +    + +E
Sbjct: 225 VDPRPVDTAGATKSTLLKE 243


>gi|239908022|ref|YP_002954763.1| Flp pilus assembly CpaB domain protein [Desulfovibrio magneticus
           RS-1]
 gi|239797888|dbj|BAH76877.1| Flp pilus assembly CpaB domain protein [Desulfovibrio magneticus
           RS-1]
          Length = 300

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 18/252 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   +  I+++ + AL AG++ +R +        E   +  A  + V+++   +  G  
Sbjct: 1   MKTKAVPHIILAVILALTAGVLTIRWLGSVRAPKVE-QAKPAAPKVEVVVAARAIPKGGR 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR--GN 118
           +  ++++   F  E    G + DV      QE  G +    I   DPI  +KL+ +   +
Sbjct: 60  LDASMVKSKGFEAEAAPQGALRDV------QEAYGRISARDISPDDPITPDKLMPKGATS 113

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---LSERKPTVTVVLSNIR 175
           GGL + +  GKRA T+  S     GG+I P   VDV++          +    ++L N+ 
Sbjct: 114 GGLDASVAPGKRAFTIKGSKIMGSGGLITPGCRVDVLVTYPVPNGKNDEKINKIILENVP 173

Query: 176 VIAIDHN----IDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           ++         I  D R  + +T   TL + P +A+ L  A     L L LR+  D +  
Sbjct: 174 ILTTGTERETKIGKDGREELANTDFYTLMVAPEEAERLALASDTGSLHLALRTPGDADIV 233

Query: 230 SSEDSDVWDVQE 241
           ++  +DV    E
Sbjct: 234 TTSGADVAKSLE 245


>gi|220923695|ref|YP_002498997.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
 gi|219948302|gb|ACL58694.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
          Length = 264

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/263 (28%), Positives = 125/263 (47%), Gaps = 20/263 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + RL  ++V+    + A  +A+ L          V         +VL+   +LA G  +T
Sbjct: 1   MLRLCLLIVALGAGIAAAWLAVSL--RDQPVAAVVPAPVQPATQDVLVVSTELAQGERLT 58

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              + W  +PE  +   ++    +P A+ E  G  +R  +  G+P++  KL     G L+
Sbjct: 59  KENMRWQPWPESALNSAYVTRSARPAALDEFAGSTLRSRMAPGEPVQDGKLAGLNAGFLA 118

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-----SLSERKPTVTVVLSNIRVI 177
           ++LP GKRA  + IS  +  GG I P+D VDV+            R+     +L N+ V+
Sbjct: 119 TVLPSGKRAVAVRISAENTAGGFILPSDRVDVIHTFAPQAQGEGAREHRSRTILKNVPVL 178

Query: 178 AIDHNIDSDERV--------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           AID  +D  ++         ++G TATLEL   QA+ L AA++   LSL LRS AD N  
Sbjct: 179 AIDQTVDEAQKADKGKGKSVVIGKTATLELDSRQAEILAAAEAAGTLSLSLRSAADSNEV 238

Query: 230 SSEDSDVWDVQEEGKEIQIIKAG 252
            +  ++     E  + +++I+ G
Sbjct: 239 PTAATE-----ERIQTVRVIRGG 256


>gi|77919344|ref|YP_357159.1| Flp pilus assembly protein CpaB [Pelobacter carbinolicus DSM 2380]
 gi|77545427|gb|ABA88989.1| Flp pilus assembly protein CpaB [Pelobacter carbinolicus DSM 2380]
          Length = 272

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 107/246 (43%), Gaps = 9/246 (3%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   ++ + ++ +F ++A I+  R +S    Q      E       ++++  D+ +G  +
Sbjct: 3   KYGTIIALALAVIFGVIAVILVNRWLSSKVSQEATTPRE-SIAMTEIVVAAADVNIGTRL 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
              +L    +P+ +V  G  +D+      +++ G +    ++ G PI   +L    +G G
Sbjct: 62  DQTLLAMAQWPKASVPKGAFEDI------EQVVGRVSVSKMVTGTPILAAELAAPNSGAG 115

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L +L+  G RA  + ++    VGG I PN  VD++ +   S+R       L  + V+AI 
Sbjct: 116 LVALIKPGMRAMAIKVNEVVGVGGFILPNTFVDIISLDERSKRTKVADTFLHKVEVLAIA 175

Query: 181 HNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
                 + +  V  T TLELTP  A+ LV       + LVLR+  D   +      V   
Sbjct: 176 QETFIEEGKPKVVRTVTLELTPEDAEKLVEKTHEGPIQLVLRNPLDEKETPPPPKKVVKR 235

Query: 240 QEEGKE 245
               + 
Sbjct: 236 TRVRRA 241


>gi|90411207|ref|ZP_01219220.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           3TCK]
 gi|90328053|gb|EAS44374.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           3TCK]
          Length = 266

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/267 (23%), Positives = 116/267 (43%), Gaps = 30/267 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHV------QTEEVITENPA---------KFI 46
           K    + + +S +  L A I+A   +           +  E +T+              +
Sbjct: 3   KGKIFLTLFISIMMGLGALILANNWLQSKQANLNSQTKPSEPVTQVEVQIKEVMKEEPKV 62

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
             + ++  + +G  +    L    +P + V              +++ G+L R  I +GD
Sbjct: 63  PRVTAQQRIPLGTKIEAKHLSIEYYPTDLVS------TKGYETPEQVVGMLARNEIFEGD 116

Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
            +R E+LV  G G  L++L+    RA T+ ++    V G + P D VDV+  +  S    
Sbjct: 117 LLRKERLVTPGEGTTLAALISPNMRAVTIRVNDVIGVAGFLLPGDFVDVIYTKEKSNN-- 174

Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
               VL  I+++A+D    +D+ + ++    TLELTP QA++LV A+S  +L L LR+  
Sbjct: 175 -AVTVLKKIKILAVDQTARTDDSKPVIVRAVTLELTPKQAESLVTAKSKGELQLSLRNPN 233

Query: 225 DLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           D+    ++       +     + IIK 
Sbjct: 234 DIEKIKTKRVY----RRTTDAVTIIKG 256


>gi|157961833|ref|YP_001501867.1| SAF domain-containing protein [Shewanella pealeana ATCC 700345]
 gi|157846833|gb|ABV87332.1| SAF domain protein [Shewanella pealeana ATCC 700345]
          Length = 272

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 113/237 (47%), Gaps = 16/237 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ +++S VF + A  +A   +           TE  A   NV+    ++ +G +
Sbjct: 1   MNNKTVLFVILSLVFGVTAVYLAQNWL------KTNTKTEAVASTSNVMTMVTEVPLGTI 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +    L      +  + +G I D+       E +G +V+  + +G+ +R E++  +G G 
Sbjct: 55  IERKHLALTPVADNLIPEGAITDI------TEAEGFVVKHRLYQGEVLRKERITPKGEGS 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+SL+    RA T+ ++    V G + P + VD++ + +         +VLSN++++AI
Sbjct: 109 TLASLITPTMRAVTIRVNDVVGVAGFLLPGNRVDIINIFTTP--SLKTDIVLSNVKILAI 166

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           D    +DE + ++    TLEL+  QA+ L+ A+S   L L LR+  D       D +
Sbjct: 167 DQKASNDENKPVLVRAVTLELSLEQAETLMIAKSRGSLQLALRNPNDTAVIELADIE 223


>gi|259417281|ref|ZP_05741200.1| Flp pilus assembly protein CpaB [Silicibacter sp. TrichCH4B]
 gi|259346187|gb|EEW58001.1| Flp pilus assembly protein CpaB [Silicibacter sp. TrichCH4B]
          Length = 267

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 94/235 (40%), Gaps = 11/235 (4%)

Query: 21  IIAMRLVSPHHVQTEEVIT--ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
           ++A   +  +        +  E     +NV ++   L  G  +T   +  VA+PE  + +
Sbjct: 1   MMAKNYIEAYQNALAHERSNREAAVPTVNVFVANKTLTYGEELTKENVRAVAWPENALPE 60

Query: 79  GFIDDVHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDI 136
           G   +               V   + K +P+   K+     + G++S L KG RA  + +
Sbjct: 61  GIFSEESDLFPSDSPKDARYVLRTMEKNEPLLAVKITAPGEDAGITSRLEKGMRAFAIRV 120

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSER------KPTVTVVLSNIRVIAIDHNIDSD-ERV 189
            ++S V G ++P D VDV        R           ++ SNI +IA+D     D    
Sbjct: 121 DVASGVSGFLRPGDRVDVYWSGQPPARSGQERSGEVTRLIQSNIELIAVDQMSGGDFSNA 180

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           ++  T T++  P +   L  AQS  +LSL L    D   +S  + D   +   G 
Sbjct: 181 IIARTVTVKAQPEEVARLAQAQSTGRLSLALVGAQDDTIASLVEVDQRSLFGLGD 235


>gi|134291858|ref|YP_001115627.1| SAF domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134135047|gb|ABO59372.1| SAF domain protein [Burkholderia vietnamiensis G4]
          Length = 281

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 122/248 (49%), Gaps = 23/248 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R ++ +VV+ V  L A + A R +                   +V ++  DL +G 
Sbjct: 1   MKNSRAILMLVVAMVAGLAAVVFASRWLMNTSN----------GSVTSVAVATTDLNLGE 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            + PN +  V++P  +V  G   D       +EL+G +VR  + +G+P+   KL      
Sbjct: 51  PLGPNQIHMVSWPAGSVPTGAFTD------TKELEGRVVRTSLARGEPVIESKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174
           GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I
Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ 
Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDHKTLTTDG 224

Query: 234 SDVWDVQE 241
           +    +  
Sbjct: 225 ATKMTLLG 232


>gi|163742212|ref|ZP_02149600.1| CpaB family protein [Phaeobacter gallaeciensis 2.10]
 gi|161384542|gb|EDQ08923.1| CpaB family protein [Phaeobacter gallaeciensis 2.10]
          Length = 266

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 10/233 (4%)

Query: 21  IIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
           ++A   ++ +  +              ++V I+   L  G  +T   +  V +PE  + +
Sbjct: 1   MMAKNYITAYQNELARERASRGENIPLVDVFIANTQLKYGERLTKEHIRSVRWPENAIPE 60

Query: 79  GFIDDVHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDI 136
           G    +      Q  D   +V   + K + I   K+     + G++S L KG RA  + +
Sbjct: 61  GAFLTMDALFPPQYPDDHRVVLRRMEKDEAILAVKVTKPGEDAGITSRLSKGMRAFAIRV 120

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIRVIAIDHNIDSD-ERVL 190
            +SS V G ++P DHVDV    SL++           ++ +NI +IA+D     D +  +
Sbjct: 121 DVSSGVSGFLRPGDHVDVYWTGSLNDQNGGRNGEFTRLIQTNIELIAVDQTAGGDLDGAV 180

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243
           +  T T  + P Q  AL  AQS  +LSL L    D   +S  + D   +   G
Sbjct: 181 IARTVTAAVRPEQVAALAQAQSTGRLSLSLVGAGDDTVASVIEVDQRSLLGLG 233


>gi|85373132|ref|YP_457194.1| pilus assembly protein CpaB [Erythrobacter litoralis HTCC2594]
 gi|84786215|gb|ABC62397.1| pilus assembly protein CpaB [Erythrobacter litoralis HTCC2594]
          Length = 371

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 17/253 (6%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +A R +       E        +   VL+++  L VG ++T + L +  +PEE V D + 
Sbjct: 21  MAARSMFAGASAPEATAAVQEPQGPKVLVAQRGLPVGTIITADALGFQMWPEELVQDAYF 80

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISS 140
            +    + + +L G +VR P+  G+P+    LV  G+ G L++ L  G RA T+ +S ++
Sbjct: 81  IEGE--SDITQLLGTVVRHPVTAGEPLTQGTLVSPGDRGFLAAALGPGMRAITVPVSANT 138

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKP---TVTVVLSNIRVIAIDHNIDSDERVLVG----- 192
            V G + P D VD+++ +++   +        +L N+RV+A D   +             
Sbjct: 139 GVAGFVFPGDRVDLMLTQAVKGEETDLKATETILRNLRVLATDQTTEQTTNEAGKTVVRA 198

Query: 193 -STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS-----SSEDSDVWDVQEEGKEI 246
             T TLE+TP  A+ +  AQ++  LSL LRSIAD         +S D  + D     +E 
Sbjct: 199 FRTVTLEVTPKIAEKVAVAQTLGTLSLALRSIADNQAELERAIASGDVKIPDGASPEEEE 258

Query: 247 QIIKAGVIVNKDG 259
           +II+A +    DG
Sbjct: 259 RIIQAAMNRPNDG 271


>gi|116249980|ref|YP_765818.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254628|emb|CAK05702.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 271

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 109/267 (40%), Positives = 158/267 (59%), Gaps = 6/267 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ V A +AG++AM++     V T+          +N+L+S  +L+VG  
Sbjct: 1   MKPARLIILAVAVVAAGLAGLLAMQMAGSGGVVTQVRSVVEKEPTVNILVSSANLSVGAR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + W+A+P+  V  G I +  +P+A+++L G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LDDQSVHWMAWPQGGVVPGLITEADKPDAVKDLQGAVVRLPIFEGEPIRPEKIADSSSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVTVVLSNIRVIAI 179
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR      K     VLSN+RV+AI
Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGAEADKLITETVLSNVRVLAI 180

Query: 180 DHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235
           D  I   D   + +VG+TATLELTP Q K L  AQ +A +LSL LRS+AD     +  +D
Sbjct: 181 DQQIQEKDDGSKSVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240

Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDGEG 261
                + G   IQ+IK+G IV      
Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDASAA 267


>gi|170692565|ref|ZP_02883727.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M]
 gi|170142221|gb|EDT10387.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M]
          Length = 278

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 118/250 (47%), Gaps = 25/250 (10%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R ++ + ++ +  L A   A R +                    V ++  ++++G 
Sbjct: 1   MKTSRAIVMLGMALLAGLAAVGFASRWLLQTSSSA----------LTPVAVATAEVSLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            +   ++  V +P  +V  G   D       + LDG +VR  +  G+P+   KL  +   
Sbjct: 51  PLNSTMIRTVNWPTASVPPGAFKDP------KALDGRVVRASLEPGEPVIESKLAPQGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRSLSERKPTVTVVLS 172
           GGLS+++ +GKRA T+ ++    V G   P ++VDV++       ++   ++    +VL 
Sbjct: 105 GGLSAVIGEGKRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPEAKTADPQQSISKIVLE 164

Query: 173 NIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
            I V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D     +
Sbjct: 165 KILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDLARSVGSLSLVLRNQIDDRALPT 224

Query: 232 EDSDVWDVQE 241
             +  + +  
Sbjct: 225 GGATKFTLLG 234


>gi|163745847|ref|ZP_02153206.1| CpaB family protein [Oceanibulbus indolifex HEL-45]
 gi|161380592|gb|EDQ05002.1| CpaB family protein [Oceanibulbus indolifex HEL-45]
          Length = 286

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 104/251 (41%), Gaps = 10/251 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58
           M+    + ++V    A  A  +A   +S +     +             V +++  L  G
Sbjct: 1   MRAVFGLVLLVGIALAGGAVYLAKDRISQYQAANAQAQAALAQVVPTQTVWVAEKPLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117
             +T   +  V +PE  + +G   +          D  +V   I K + I   K+ +   
Sbjct: 61  QPLTREDVRAVNWPENAIPEGSFIEETLLFPENTKDHRIVLRNIEKDEAIMAVKVTEPGE 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVVLS 172
           + GL+S L +G RA T+ + +SS V G ++P D VDV           S       ++ S
Sbjct: 121 DSGLTSRLARGMRAFTIKVDVSSGVSGFLRPGDRVDVYWTGRVNVGNQSSNGDVTKLIES 180

Query: 173 NIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
            +++IAID + D+   E   +  T T+ + P Q  AL  AQS  KLSL L    D   + 
Sbjct: 181 AVQLIAIDQSADALVMEEASIAKTVTVAVKPQQVAALAQAQSTGKLSLSLVGTNDDTVAE 240

Query: 231 SEDSDVWDVQE 241
           + + D   +  
Sbjct: 241 AIEVDQRSLLG 251


>gi|295700371|ref|YP_003608264.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1002]
 gi|295439584|gb|ADG18753.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1002]
          Length = 276

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 23/248 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGI-IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R + ++   V A +A +  A R +                   +V ++  D+++G 
Sbjct: 1   MKNSRALVMLTIAVLAGLAAVSFASRWLLQTSSAAV----------TSVAVASSDISLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            +  N++  V++P  +V  G   D       + L+G ++   +  G+P+   KL  +   
Sbjct: 51  PLNQNLIHMVSWPTSSVPPGAFADS------KALEGRVLLTSLAPGEPVLESKLAPQGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNI 174
           GGLS+++ +G RA T+ ++    V G   P ++VDV++           +    +VL  I
Sbjct: 105 GGLSAVIGEGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQQANKTDASQSISKIVLEKI 164

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    S+  
Sbjct: 165 LVLAVAQRVSRDDTAPKVVNAVTLEVTPEQAEKLDLARSVGTLSLVLRNQVDKQTPSTGG 224

Query: 234 SDVWDVQE 241
           +    + +
Sbjct: 225 ATKLTLLD 232


>gi|116748929|ref|YP_845616.1| SAF domain-containing protein [Syntrophobacter fumaroxidans MPOB]
 gi|116697993|gb|ABK17181.1| SAF domain [Syntrophobacter fumaroxidans MPOB]
          Length = 292

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 125/268 (46%), Gaps = 14/268 (5%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF-INVLISKGDLAVGMV 60
           +   +  + ++ V ALVA ++  + V         V+TE      + V ++  DL  G  
Sbjct: 3   RFRAIFPLALAIVLALVASVVVYKWVQMKTGVQTTVVTEKAEPGGVQVALASADLPWGTK 62

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGN 118
           +T  +++   +P +++  G+  D  +      ++G ++  P+ +G+ +   KL       
Sbjct: 63  LTREMVKMAEYPPKHLPAGYFSDPAK------IEGRVLITPVKQGEQLLESKLAPLSVTT 116

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRV 176
           GG+S+++  GKRA  +       + G I+P + VDV++    ++ K   T  VVL N++V
Sbjct: 117 GGVSAVVSVGKRAIAVAGDKVIGLAGFIQPGNFVDVLVTIRDTQEKTPSTSKVVLENVKV 176

Query: 177 IAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           +A    ID  +          TLE+TP +A+ L  A S+ KL   LR++ D     +  +
Sbjct: 177 LATGTVIDKKAGTEPGPVDVFTLEVTPEEAERLAFAASLGKLHFALRNVTDTEVVYTMGT 236

Query: 235 DVWDVQEE-GKEIQIIKAGVIVNKDGEG 261
            + D  +     ++++ A  +V  + E 
Sbjct: 237 TIADALDAYRPRMKMVSAQPVVKSEPEA 264


>gi|212635454|ref|YP_002311979.1| Flp pilus assembly protein CpaB [Shewanella piezotolerans WP3]
 gi|212556938|gb|ACJ29392.1| Flp pilus assembly protein CpaB [Shewanella piezotolerans WP3]
          Length = 267

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 119/263 (45%), Gaps = 17/263 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    L+ +V+S VF + A  +A   +            E  +    V+    ++ +G +
Sbjct: 1   MNNKTLLFVVLSLVFGVTAVYLAQNWLKS------NTKDEVISTTGTVITMATEVPLGAI 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +    L     PE  +  G + D      + E +G +V+  +  G+ +R E+L  +G G 
Sbjct: 55  LQRKHLSLTTLPESLIPKGAVLD------LAEAEGKVVKQKLYAGEVLRAERLTAKGEGS 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+SL+    RA T+ ++    V G + P + VD++ +   S       +VLSN++++AI
Sbjct: 109 TLASLITPTMRAVTIRVNDVVGVAGFLLPGNRVDIINIFKSS--GLKTDIVLSNVKILAI 166

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D    +DE + ++    TLEL+  QA+ L+ A+S   L L LR+  D       +    D
Sbjct: 167 DQRASNDENKPVLVRAVTLELSLDQAEILMIAKSRGSLQLALRNPNDKAVIELAEL-EED 225

Query: 239 VQEEGKEIQIIKAGVIVNKDGEG 261
              + +E+       +V  +G G
Sbjct: 226 EDSKNREVAPQLVQTVVKSEGNG 248


>gi|325525577|gb|EGD03367.1| Flp pilus assembly protein CpaB [Burkholderia sp. TJI49]
          Length = 277

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 125/248 (50%), Gaps = 23/248 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK++R +M +V++ +    A + A R +          +  + +    + ++  DL +G 
Sbjct: 1   MKISRAVMMLVIAMIAGFAAVVFASRWL----------VQTSTSSVTPIAVAATDLNLGE 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            + PN +  V++P  +V  G   D       +ELDG +VR  + +G+P+   KL      
Sbjct: 51  PLGPNQVHTVSWPTGSVPPGAFTDP------KELDGRVVRTSLARGEPVIESKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174
           GGLS+++ +G RA T+ ++    V G   P ++VDV++     +  S+ +    +VL +I
Sbjct: 105 GGLSAVIAEGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQAQQGKSDGQSISKIVLEHI 164

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ 
Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQIDKQTLNTDG 224

Query: 234 SDVWDVQE 241
           +    +  
Sbjct: 225 ATKLTLLG 232


>gi|16263309|ref|NP_436102.1| CpaB2 pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|14523988|gb|AAK65514.1| CpaB2 pilus assembly protein [Sinorhizobium meliloti 1021]
          Length = 263

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/240 (32%), Positives = 121/240 (50%), Gaps = 11/240 (4%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + R++ ++++      A  +A   +     +  EV          VL++  +L  G V+ 
Sbjct: 1   MIRIVILLLALASGGAASWLA---LGTGDQRAVEVAEVQETPSQEVLVAAAELKRGAVIE 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            N L W  + E  +   FI    +P+A   L G L     + G+PIR +KL   G G LS
Sbjct: 58  ENQLRWQPW-EGEIPPVFISRSSRPDATTALKGSLALSGFVAGEPIRDDKLAQGGTGYLS 116

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVI 177
           SLLP GKRA  + ++  S  GG I PNDHVDV+        S    K     +LSNIRV+
Sbjct: 117 SLLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHTVARPDASGDAGKVVSRAILSNIRVL 176

Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+D  +    D   ++G TATLE+ P Q  A+ AA++   +SL LR+I D + +S  +++
Sbjct: 177 AVDQTVSQASDGASVIGKTATLEVDPEQISAVAAAEASGTVSLALRAITDNHEASVVEAE 236


>gi|261252086|ref|ZP_05944659.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
 gi|260935477|gb|EEX91466.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
          Length = 247

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 107/252 (42%), Gaps = 19/252 (7%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   ++ +++S VF L A   A + +        EV        I    +  ++  G V+
Sbjct: 3   RNQVILLLLLSIVFGLGAVFFAKQWMDRQLQPQVEVEVVEREPVIV---AAQEIFAGSVI 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
               +      ++        D  Q    +EL G +    I  G+ I   +L   G G  
Sbjct: 60  EEQHVTSRLLEKDW------RDELQFTKAEELVGQVAATTIYPGEIIHPNRLSSSGEGST 113

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L+SL+P+ KRA T+ ++    V G + P + VD++      +   + + VL  I+V+A+D
Sbjct: 114 LASLIPENKRAVTIRVNDVIGVAGFLLPGNKVDILNTVKYGKNSASTSTVLKEIKVLAVD 173

Query: 181 HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
               S E + ++    TLE+TP QA+ L++AQS   + L LR+  +              
Sbjct: 174 QTARSKENKPVIVRAVTLEVTPRQAEKLLSAQSRGNIQLTLRNPHEEEKV--------VK 225

Query: 240 QEEGKEIQIIKA 251
           +     + IIK 
Sbjct: 226 RYVAPSVTIIKG 237


>gi|103486618|ref|YP_616179.1| Flp pilus assembly CpaB [Sphingopyxis alaskensis RB2256]
 gi|98976695|gb|ABF52846.1| Flp pilus assembly CpaB [Sphingopyxis alaskensis RB2256]
          Length = 345

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 17/242 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   ++M IV + V A+ A      ++                    +L++   L VG +
Sbjct: 1   MDTRKIMLIVGALVIAIGAAFGVNYMMRGAGAPAARAAAAPEITGPMILVATRQLPVGTI 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           V P+   +  +P++ V + +         +  L G +VR PI  G P+    LV   + G
Sbjct: 61  VGPDSFRFQPWPKDLVENAYFVKEKT--DVNTLVGTVVRHPITAGQPLTQGALVHPNDRG 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---------SLSERKPTVTVV 170
            L++ L  G RA T+ +S    V G + P D VDVV+ +            ++  T   +
Sbjct: 119 FLAAALGPGMRAITVKVSQEQGVAGFVFPGDRVDVVLTQTIEVEEGSTYPDDQIFTAETI 178

Query: 171 LSNIRVIAIDHNIDSDERVLVG-----STATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           + NIRV+A D   D+++           + TLE TP  A+ +  AQ + +LSL LR +A+
Sbjct: 179 VRNIRVLATDQRYDAEDETGKTPVRTFGSVTLEATPEIAEKIAVAQGMGRLSLALRPLAE 238

Query: 226 LN 227
             
Sbjct: 239 SA 240


>gi|83859356|ref|ZP_00952877.1| Flp pilus assembly CpaB [Oceanicaulis alexandrii HTCC2633]
 gi|83852803|gb|EAP90656.1| Flp pilus assembly CpaB [Oceanicaulis alexandrii HTCC2633]
          Length = 268

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 132/261 (50%), Gaps = 5/261 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGM 59
           M   RL+ + V+ + A+ A +     + P       V+ +  A   + VL++  D++   
Sbjct: 1   MNAVRLIVLAVAALAAVFAALFVRSAMQPAAAPAPVVVEQAAAPEVVQVLVAARDMSPSS 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            V+     W  +P E V   FI    +P+AM EL G + R   + G+PI   KLV  G  
Sbjct: 61  RVSGADFRWTNWPVEAVIPAFITREARPDAMDELSGAVTRAAFVDGEPILPGKLVQPGEA 120

Query: 120 G-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
           G +++++  G RA  + IS  S  GG I PND VDV++  S  +      V++ N+RV+A
Sbjct: 121 GFMAAVIDPGMRAVAVPISAESGAGGFILPNDRVDVLVTTSARDMGYISEVLVENVRVLA 180

Query: 179 IDHN-IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN--PSSSEDSD 235
           ID   +D  E V++GSTATLELTP Q  ++    +   + L LRS+AD    P     +D
Sbjct: 181 IDQTYVDDGEGVVLGSTATLELTPQQTSSVALGVAEGDIVLALRSVADREGGPRLPNGAD 240

Query: 236 VWDVQEEGKEIQIIKAGVIVN 256
               +  G+E++II+ G    
Sbjct: 241 DEAGERRGREVRIIRYGAEQR 261


>gi|197295152|ref|YP_002153693.1| putative flp type pilus assembly protein [Burkholderia cenocepacia
           J2315]
 gi|195944631|emb|CAR57235.1| putative flp type pilus assembly protein [Burkholderia cenocepacia
           J2315]
          Length = 279

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 23/248 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R +M +VV+ +  L A + A   +      +            +V ++  DL +G 
Sbjct: 1   MKNSRAVMMLVVAMIAGLAAVVFASHWLMQTSTNSV----------TSVAVATTDLNLGE 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            + PN +  V++P  +V  G   D       + L+G +VR  + +G+P+   KL      
Sbjct: 51  PLGPNQIHMVSWPSGSVPTGAFTD------TKALEGRVVRTSLSRGEPVIESKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174
           GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I
Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ 
Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLNTDG 224

Query: 234 SDVWDVQE 241
           +    +  
Sbjct: 225 ATKLTLLG 232


>gi|296156488|ref|ZP_06839326.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
 gi|295893087|gb|EFG72867.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
          Length = 269

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 119/251 (47%), Gaps = 25/251 (9%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            ++++ +  L A + A R +          ++++      V+++  D+ +G  + P+ L+
Sbjct: 1   MLLIATLAGLTAVVFASRWM----------VSQSSNATTKVVVAATDINLGQRIGPDFLK 50

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126
              +P  +V  G   D+ + +      G +++  +L G+P+   KL   G  GGLS+++ 
Sbjct: 51  LTEWPSNSVPPGSFTDIQKLD------GRVLKESLLHGEPVLEAKLTPVGTLGGLSAVIG 104

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAI 179
           +GKRA T+ ++    V G   P ++VD+++      R P          +VL  I V+A+
Sbjct: 105 EGKRAITVRVNDVIGVAGFALPGNYVDIIVNTQKDARDPGTQRDQNISKIVLEKILVLAV 164

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
              +  DE +  V    TLE++P QA+ +  A+S+  LSLVLR+  D     +  +    
Sbjct: 165 AQEVGRDETKPKVVDAVTLEVSPEQAEKIDLARSIGTLSLVLRNQIDPQAIDTAGATKAT 224

Query: 239 VQEEGKEIQII 249
           + +    +  +
Sbjct: 225 LLKTPVAVAPV 235


>gi|218671060|ref|ZP_03520731.1| Flp pilus assembly protein CpaB [Rhizobium etli GR56]
          Length = 214

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 95/210 (45%), Positives = 133/210 (63%), Gaps = 6/210 (2%)

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G  +  + + W+A+P++ V  GFI +  +P+A+++L G +VR+PI +G+PIR EK+ D  
Sbjct: 1   GARLGDDTVHWMAWPKDGVVQGFITEADKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSS 60

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRV 176
           +  LSSLLP GKRA   +IS+++  GG I PND VDV+MVR  +E  K     VLSN+RV
Sbjct: 61  SRILSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRV 120

Query: 177 IAIDHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSE 232
           +AID  I   D   + +VG+TATLELTP Q K L  AQ +A +LSL LRS+AD     + 
Sbjct: 121 LAIDQQIQEQDDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTS 180

Query: 233 DSDVWDVQEEGKE-IQIIKAGVIVNKDGEG 261
            +D     + G   IQ+IK+G IV   GE 
Sbjct: 181 AADYLLSGDNGSAIIQVIKSGSIVTDAGEA 210


>gi|148557762|ref|YP_001265344.1| SAF domain-containing protein [Sphingomonas wittichii RW1]
 gi|148502952|gb|ABQ71206.1| SAF domain [Sphingomonas wittichii RW1]
          Length = 332

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 14/241 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +L+ ++++ V A ++ ++A  +   +                 V ++   L VG +
Sbjct: 1   MDARKLLLLIMALVMAGISAVVARSMFGGNSEAEAAPAAAPQPSGPEVAVAVRPLPVGTI 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + P    +  +P E V   +       + +  L+G +VR  I  G P+    LV  G+ G
Sbjct: 61  IGPESFRYQRWPAELVSKTYFIKGE--SDLAALNGSVVRYAITAGAPVTQGALVKPGDRG 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVLSNI 174
            L++ L  G RA T+ +S  S V G + P D VD+++ + +              ++ NI
Sbjct: 119 FLAAALGPGMRAVTISVSAQSGVAGFVFPGDRVDLMLTQEVPGGGDGPPLKAAETIIRNI 178

Query: 175 RVIAIDHNI----DSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           RV+A D       D + + +V +T   TLE TP  A+ +  AQ++ +LSL LRSIAD   
Sbjct: 179 RVLAADQRTDKTVDEEGKTVVANTSNVTLEATPKIAEKIAVAQTIGQLSLALRSIADDRA 238

Query: 229 S 229
            
Sbjct: 239 E 239


>gi|90419763|ref|ZP_01227672.1| Flp pilus assembly protein CpaB [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335804|gb|EAS49552.1| Flp pilus assembly protein CpaB [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 293

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 86/229 (37%), Positives = 128/229 (55%), Gaps = 11/229 (4%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
                E P K   VL++  DL++G  V    L+W ++PE+ +    I    +P+A++ L 
Sbjct: 58  TAAPAEPPIKLAEVLVTSRDLSMGEAVDEA-LDWQSWPEDGIGPTLIRKSDRPDALETLK 116

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           G L R     G+P+R  KL+    G +S++LP GKRA  + I+  ++ GG + PNDHVDV
Sbjct: 117 GSLARQSFFAGEPVRESKLIRSDQGFMSAVLPAGKRAVAVQIAAETSAGGFVLPNDHVDV 176

Query: 155 VMVRS-----LSERKPTVTVVLSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKAL 207
           +M R          +     VL N+RV+AID  I     E+V+VGSTATLE+ P QA+AL
Sbjct: 177 IMTRRVSSSENRGDQVLTETVLRNLRVLAIDQTIQEKDGEKVVVGSTATLEVDPEQAEAL 236

Query: 208 VAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGK--EIQIIKAGV 253
            AAQ +A +L L LRS+AD  P S   +     QE  +  +I++++ G 
Sbjct: 237 TAAQQIADRLVLSLRSLADSVPGSPGYAAFLLAQENARNGKIRVVRYGQ 285


>gi|83950065|ref|ZP_00958798.1| CpaB family protein [Roseovarius nubinhibens ISM]
 gi|83837964|gb|EAP77260.1| CpaB family protein [Roseovarius nubinhibens ISM]
          Length = 281

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 107/258 (41%), Gaps = 13/258 (5%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           ++V    A  A  +A  ++  +  +  +     +   K ++V ++K  LA G  +T   +
Sbjct: 1   MIVGIGLAGFAVYMAKSVIQGYRTELNSARAANQPAIKTVDVYVAKRALAYGDRLTKEDV 60

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLL 125
             V +P   + +G    V       + +   V   + K + +   K+     + G+ + L
Sbjct: 61  VQVKYPARALPEGVFQTVEDLFPEGQKEFRTVLRAMEKYEALLGVKVTAPGEDAGILTKL 120

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---------SLSERKPTVTVVLSNIRV 176
            +GKRA  + +  +S V G ++P D VDV                       ++L+ + +
Sbjct: 121 ERGKRAFAIKVDTTSGVAGFLRPGDRVDVYWTGNTGRGGLRTEGDSTGDVTKLILTGVNL 180

Query: 177 IAIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           IA+D +  D     ++  T T+ ++P +  AL  AQ+  KL+L L    +   +   + D
Sbjct: 181 IAVDQSSNDQTTGAILARTVTVAVSPQEVAALAQAQATGKLTLSLLGTKEDTIAEVIEVD 240

Query: 236 VWDVQEEGKEIQIIKAGV 253
              +    +  + ++A V
Sbjct: 241 QSSLLGLQQVQKQVQAPV 258


>gi|157375509|ref|YP_001474109.1| Flp pilus assembly protein CpaB-like protein [Shewanella sediminis
           HAW-EB3]
 gi|157317883|gb|ABV36981.1| Flp pilus assembly protein CpaB-like protein [Shewanella sediminis
           HAW-EB3]
          Length = 274

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 114/260 (43%), Gaps = 15/260 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ +++S +F + A  +A   +             NP    +V+     + +G +
Sbjct: 1   MNNKTILFVLLSLIFGVAAVFLAQSWL------KTNTEAVNPQVSTSVITMATLVPLGTI 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +    L     P   + +  I         +  +G++V+  +  G+ +R E++  +G G 
Sbjct: 55  LERKHLILTPMPNTVIPETAIKT------FEGAEGMVVKQNLYAGEVLRSERITVKGEGS 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            L+SL+    RA T+ ++    V G + P + VDV+ +      +    VVL+N++++AI
Sbjct: 109 TLASLISPQMRAVTIRVNDVVGVAGFLLPGNRVDVLNLFKR-GGRLQTDVVLANVKILAI 167

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           D    +DE +  +    TLEL   QA+ L+ A+   KL L LR+  D         +   
Sbjct: 168 DQRSSNDENKPKLVRAVTLELNLEQAEVLMIAKGRGKLQLALRNPNDSTKVELALINEAK 227

Query: 239 VQEEGKEIQIIKAGVIVNKD 258
              + +    ++   +V+KD
Sbjct: 228 DTIDSEPTPAVRPMPVVSKD 247


>gi|307304372|ref|ZP_07584123.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C]
 gi|307318079|ref|ZP_07597515.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83]
 gi|306896120|gb|EFN26870.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83]
 gi|306902574|gb|EFN33168.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C]
          Length = 263

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 80/240 (33%), Positives = 121/240 (50%), Gaps = 11/240 (4%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + R++ ++++      A  +A   +     +  EV          VL++  +L  G VV 
Sbjct: 1   MIRIVILLLALASGGAASWLA---LGTGDQRAVEVAEVQETPSQEVLVAAAELKRGAVVE 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            N L W  + E  +   FI    +P+A   L G L     + G+PIR +KL   G G LS
Sbjct: 58  ENQLRWQPW-EGEIPPVFISRSSRPDATTALKGSLALSGFVAGEPIRDDKLAQGGTGYLS 116

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVI 177
           SLLP GKRA  + ++  S  GG I PNDHVDV+        S    K     +LSNIRV+
Sbjct: 117 SLLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHTVARPDASGDAGKVVSRAILSNIRVL 176

Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+D  +    D   ++G TATLE+ P Q  A+ AA++   +SL LR+I D + +S  +++
Sbjct: 177 AVDQTVSQASDGASVIGKTATLEVDPEQISAVAAAEASGTVSLALRAITDNHEASVVEAE 236


>gi|56477529|ref|YP_159118.1| pilus assembly transmembrane protein [Aromatoleum aromaticum EbN1]
 gi|56313572|emb|CAI08217.1| pilus assembly transmembrane protein [Aromatoleum aromaticum EbN1]
          Length = 283

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 114/250 (45%), Gaps = 24/250 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   +  ++V+ +  L A ++  R +            ++      + ++  +L +G  
Sbjct: 1   MKAKGMGFLLVAMLAGLAAVVLGTRWLQ----------AKSAGDGNRIAVAAVELQLGSR 50

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           + P  +  V +P  ++  G   D+ + +      G +    I  G+P+   +L      G
Sbjct: 51  IAPEAIRLVEWPSGSIPAGAFHDLAKLD------GRVAITGIQPGEPVLESRLAPEGTKG 104

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRSLSERKPTVTVVLSN 173
           GLS+++P+GKRA T+ ++    V G   P ++VD+++          S  +    +VL  
Sbjct: 105 GLSAVVPEGKRAITVRVNDVIGVAGFTLPGNYVDIMVNTENTGANRNSADQMISKIVLER 164

Query: 174 IRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           I V+A+    + DE +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D N + + 
Sbjct: 165 ILVLAVAQEANRDETKPKVVNAVTLEVTPEQAERLDLARSVGNLSLVLRNQIDSNTTDTA 224

Query: 233 DSDVWDVQEE 242
                 +   
Sbjct: 225 GITKAMLLRT 234


>gi|227818614|ref|YP_002822585.1| CpaB2, Flp pilus assembly protein CpaB [Sinorhizobium fredii
           NGR234]
 gi|36958870|gb|AAQ87295.1| Pilus assembly protein, CpaB [Sinorhizobium fredii NGR234]
 gi|227337613|gb|ACP21832.1| CpaB2, Flp pilus assembly protein CpaB [Sinorhizobium fredii
           NGR234]
          Length = 263

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 15/257 (5%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + RL+ ++ +      A  +A+         T E      +    VL++  +LA G  + 
Sbjct: 1   MIRLVILLFALASGGAASWLALGFA---DQPTVEAAEVQQSPSQEVLVAAQELARGTTLE 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L W A+ E  +   FI    +P+A + L G+L +   + G+PIR +KL  RG G LS
Sbjct: 58  EPHLRWQAW-EGEIPPVFISRSARPDAKESLKGLLAQSSFVAGEPIREDKLAQRGAGFLS 116

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVI 177
           S+LP GKRA  + ++  S  GG I PNDHVDV+        S  + K     VLSNIRV+
Sbjct: 117 SMLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHTVARPDSSGKDGKVVSRAVLSNIRVL 176

Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+D  I    D   +VG TATLE  P Q   + AA++   +SL LR++AD   +   +++
Sbjct: 177 AVDQTISEGADGTSVVGKTATLEADPGQIDIIAAAEASGTVSLALRAVADNLEAPVVETE 236

Query: 236 VWDVQEEGKEIQIIKAG 252
                     ++I+  G
Sbjct: 237 GSRPG----VVRIVSGG 249


>gi|85707703|ref|ZP_01038769.1| pilus assembly protein CpaB [Erythrobacter sp. NAP1]
 gi|85689237|gb|EAQ29240.1| pilus assembly protein CpaB [Erythrobacter sp. NAP1]
          Length = 365

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 130/265 (49%), Gaps = 19/265 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +L+ ++ + V A+ +  +A  + +     T +   E       VL++   L  G +
Sbjct: 1   MDRKKLVLLLGALVVAIGSAFLARSMFAGDPAPTAQAAPEPTGP--KVLVANRALPAGTI 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +T + + +  +PEE V D +  +    + M +L G +VR P+  G+P+    LV  G+ G
Sbjct: 59  ITADAMGYQMWPEELVQDAYFIEGE--SDMSQLLGTVVRFPVTAGEPVTQGSLVSPGDRG 116

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176
            L++ L  G RA T+ +S  + V G + P D VDVV+ +++S           VL N+RV
Sbjct: 117 FLAAALGPGMRAVTVPVSAKTGVAGFVFPGDRVDVVLTQTVSGEGRPLNAAETVLRNLRV 176

Query: 177 IAIDHNIDSDERVLVG------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS- 229
           +A D   +               T TLE+TP  A+ +  AQ++ +L+LVLRSIAD     
Sbjct: 177 LATDQTTEQVTNDEGKTVVRAFRTVTLEVTPQIAEKVAVAQTIGQLTLVLRSIADNQAEL 236

Query: 230 ----SSEDSDVWDVQEEGKEIQIIK 250
               +S D ++ D     +E +I++
Sbjct: 237 ERAIASGDLEIPDDATPEEEERILR 261


>gi|54302291|ref|YP_132284.1| Flp pilus assembly protein [Photobacterium profundum SS9]
 gi|46915713|emb|CAG22484.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           SS9]
          Length = 264

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 65/267 (24%), Positives = 114/267 (42%), Gaps = 32/267 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ-TEEVITENPAKFINV------------ 48
           K    + + +S +  L A I+A   +         +     P   + V            
Sbjct: 3   KGKIFLTLFISIMMGLGALILANNWLQSKQANLNAQTKPSEPVTQVEVQIKEVMKEEPKV 62

Query: 49  --LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
             ++++  + +G  +    L    +P + V              +++ G+L R  I +GD
Sbjct: 63  PRVMAQQRIPLGTKIEAKHLSIEYYPTDLV------KSKGYETPEQVVGMLARNEIFEGD 116

Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
            +R E+LV  G G  L++L+    RA T+ ++    V G + P D VDV+ ++  S    
Sbjct: 117 LLRKERLVTPGEGTTLAALISPNMRAVTIRVNDVIGVAGFLLPGDFVDVIYIKEKSNNAI 176

Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
               VL  I+++A+D    +D+ + ++    TLELTP QA++LV A+S  +L L LR+  
Sbjct: 177 ---TVLKKIKILAVDQTARTDDSKPVIVRAVTLELTPKQAESLVTAKSKGELQLSLRNPN 233

Query: 225 DLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           D+           D       I IIK 
Sbjct: 234 DIEQKKRVYRRTTD------AITIIKG 254


>gi|224824212|ref|ZP_03697320.1| Flp pilus assembly protein CpaB [Lutiella nitroferrum 2002]
 gi|224603631|gb|EEG09806.1| Flp pilus assembly protein CpaB [Lutiella nitroferrum 2002]
          Length = 282

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 118/246 (47%), Gaps = 24/246 (9%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            IVVS +  LVA ++A + ++       +           V+++  D+ +G  ++P +L 
Sbjct: 1   MIVVSVIIGLVAVVMASQWINKQTNVAAQ----------KVVVASMDIDLGSKLSPEMLR 50

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLP 126
            V +P  ++ +G I D       + LDG +++  + +G+ I   KL      GGLS+++ 
Sbjct: 51  SVDWPSGSIPEGAILDP------KALDGRVLKTSVNRGEAILESKLAPVGTKGGLSAVVM 104

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS------ERKPTVTVVLSNIRVIAID 180
           +GKRA T+ ++    V G   P ++VD+++  +               +VL +I V+A+ 
Sbjct: 105 EGKRAMTVRVNDVVGVAGFALPGNYVDILVNTTDDAKKGQNNDASISKIVLEHILVLAVA 164

Query: 181 HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
                D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D  P  +       +
Sbjct: 165 QEASRDDTKPKVVNAVTLEVTPEQAEKLDLARSVGTLSLVLRNQVDPKPVQTAGITKQVL 224

Query: 240 QEEGKE 245
                E
Sbjct: 225 LRGHDE 230


>gi|134299960|ref|YP_001113456.1| SAF domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134052660|gb|ABO50631.1| SAF domain protein [Desulfotomaculum reducens MI-1]
          Length = 234

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 109/236 (46%), Gaps = 19/236 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+    +  +++ +F LVA     + +             +   F  V++    L    +
Sbjct: 1   MRNK--LIFILAIIFGLVAAFGVYQYLGHLKQSY-----RSSGNFKQVVVPTQPLGPKTL 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGN 118
           +T  +++    P E +  G         A Q++ G + R  +   +PI L ++      +
Sbjct: 54  ITDKMVKVKDIPVELIQPG------TAIAPQDVVGKITRSELYPEEPIMLNRIYKDSNTD 107

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-VTVVLSNIRVI 177
           G L+ L+P+G+RA T+ +   S V G+++P DHVD+++       + +  T++L NI+V+
Sbjct: 108 GDLALLIPEGQRALTVAVDDVSGVAGLLQPGDHVDIIVTFDYEGEQTSLSTLLLQNIQVL 167

Query: 178 AIDHNIDS---DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           A+  ++D+    E+     T TL + P QA  L  A     + L+LRS  D   ++
Sbjct: 168 AVGQSLDNTPKAEKKTSSQTVTLSVQPGQATPLTLATERGSIRLMLRSPKDAGTAN 223


>gi|145219385|ref|YP_001130094.1| SAF domain-containing protein [Prosthecochloris vibrioformis DSM
           265]
 gi|145205549|gb|ABP36592.1| SAF domain protein [Chlorobium phaeovibrioides DSM 265]
          Length = 262

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 115/239 (48%), Gaps = 19/239 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + + +   ++ +   +A   A R V+                   V+I    + +G  +T
Sbjct: 1   MKKPIIAAIALILGAMAAFTAARWVNISRHTGP-----------KVVIVAQPIELGKAIT 49

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121
              ++ V +P  ++  G +          E+ G + RV ++ G+P+   KL  +G  GGL
Sbjct: 50  TEQIKTVNWPGADIPQGAVSK------ATEVVGRIARVSMMPGEPVLPGKLAPKGATGGL 103

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           +S++  GKRA T+ ++   AV G   P   VD+++    + R+P    VLS ++V+A+  
Sbjct: 104 ASIISDGKRAITVKVNEVIAVAGFALPGSFVDILVSGKDANRQPFSRTVLSRVKVLAVAQ 163

Query: 182 NIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
              ++ ++  V +  TLELTP +++ L  A+S+  LSLVLR+  D    +S    + D+
Sbjct: 164 ETTAEPDKPKVVNAVTLELTPHESEKLDLARSIGALSLVLRNELDTGEVNSAGVRLSDL 222


>gi|260426594|ref|ZP_05780573.1| Flp pilus assembly protein CpaB [Citreicella sp. SE45]
 gi|260421086|gb|EEX14337.1| Flp pilus assembly protein CpaB [Citreicella sp. SE45]
          Length = 286

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 110/251 (43%), Gaps = 11/251 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58
           M+L   + ++     A  A  +A +    +    Q E            + ++   +  G
Sbjct: 1   MRLVFGLVLIAGLGLAGFAVHLAQKQFGAYQNALQLERAKAVKAVPTRMIYVTTQAVPTG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
            V+    ++   +P+E + +G  D+ + P A  E    +V   + K + +   ++ + G 
Sbjct: 61  EVLRKEYVKLAPWPQEILPEGVFDETNPPFADGE-APRVVTRAMDKFEAVLTTRISEPGG 119

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVL 171
           + GL++ L +G+RA  + + ++S V G ++P D VDV     +        R     ++ 
Sbjct: 120 DAGLTTRLERGQRAFAIKVDVTSGVSGFLRPGDRVDVYWTGKMPGTDANLPRGEVTKLIE 179

Query: 172 SNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           + +++IAID   +  +    +  T T+ ++P Q   L  AQS  +LSL L +  D + + 
Sbjct: 180 TAVKLIAIDQTAEVENSDATIARTVTVAVSPQQVAGLAQAQSTGRLSLSLLAANDDSIAE 239

Query: 231 SEDSDVWDVQE 241
           + + D   +  
Sbjct: 240 AIEVDQRTLLG 250


>gi|116626780|ref|YP_828936.1| SAF domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229942|gb|ABJ88651.1| SAF domain [Candidatus Solibacter usitatus Ellin6076]
          Length = 309

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 116/237 (48%), Gaps = 21/237 (8%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  + +    + V AL+                   +     K + V+++  D+A+G ++
Sbjct: 3   RQKKFLLFGAAWVSALLLTWFYY----------ANAVAPKQEKTLRVVVASRDMAIGTLL 52

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GG 120
             + L+ V +PE+++  G +        +Q  +  +V VP+   +P+   KL D     G
Sbjct: 53  KKSDLKVVNYPEKDIPKGAV------FTLQGAENRVVMVPMNTNEPVLQGKLSDTTTVEG 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           ++S + KG RA ++ ++  + V G+I+P  HVDV+  R  S  + T + +L N+RVI+  
Sbjct: 107 VASTIEKGYRAVSVQVTDVTGVAGLIQPGSHVDVLFTRPGSMAEATTSTILQNVRVISTG 166

Query: 181 HNIDSDE----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            +I + +    R     T TL LTP +A+ L  A++  ++ L LR+  DLN  +S +
Sbjct: 167 RSITAGQVVDPRAPKSPTVTLVLTPDEAQKLELAKNQGRIGLSLRNPLDLNRDASTE 223


>gi|78060315|ref|YP_366890.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
 gi|77964865|gb|ABB06246.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
          Length = 279

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 118/246 (47%), Gaps = 22/246 (8%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
               +M +VV+ V  L A + A   +          +  + +    V ++  DL +G  +
Sbjct: 3   NSRAVMMLVVAMVAGLAAVVFASHWL----------VQTSTSSVTPVAVATTDLNLGEPL 52

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120
            PN +  V++P  +V  G   D       + L+G +VR  + +G+P+   KL      GG
Sbjct: 53  GPNQIHMVSWPSGSVPTGAFTD------TKGLEGRVVRTSLSRGEPVIESKLAPVGTKGG 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRV 176
           LS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I V
Sbjct: 107 LSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILV 166

Query: 177 IAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           +A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ + 
Sbjct: 167 LAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLNTDGAT 226

Query: 236 VWDVQE 241
              +  
Sbjct: 227 KLTLLG 232


>gi|197118221|ref|YP_002138648.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem]
 gi|197087581|gb|ACH38852.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem]
          Length = 289

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 112/246 (45%), Gaps = 22/246 (8%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           +++ +   +A I+A   +            + P + + +  +  DL +G  +    ++  
Sbjct: 12  IIALLLGGLATIMANNYLKKQ--------ADKPYEGVPIASAAVDLPLGSKLNATQVKLA 63

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG--LSSLLPK 127
            +P++ +  G   D       + L G +V  P+  G+ I   KL+   + G  ++ ++P 
Sbjct: 64  TWPKDALPAGGYQD------YKPLVGRIVVRPLSAGEVITENKLMPLNSSGGIMTYMVPD 117

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRVIAIDHNI 183
           G RA T+ ++  + V G I PN  VDV++      S +ER     ++L N+ V+A     
Sbjct: 118 GHRAVTVSVNEVAGVAGFITPNSRVDVLLTIPRPGSTNERDNISKIILQNVPVLATGQVT 177

Query: 184 D--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
           +     +  V  T TL++TP++A+ L+       L L+LR++ D+    ++ + V     
Sbjct: 178 EQKEGGKPGVVPTVTLDVTPIEAEKLIVGTKKGSLQLLLRNVIDVASVDTKGATVSRALG 237

Query: 242 EGKEIQ 247
             + +Q
Sbjct: 238 GTETLQ 243


>gi|209515950|ref|ZP_03264811.1| Flp pilus assembly protein CpaB [Burkholderia sp. H160]
 gi|209503608|gb|EEA03603.1| Flp pilus assembly protein CpaB [Burkholderia sp. H160]
          Length = 375

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 107/249 (42%), Gaps = 20/249 (8%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + R++ IV+  + A V  II   L     V   +     P     V ++  DL  GM++ 
Sbjct: 1   MPRILKIVILVILASVGAIIFRALF----VAASQPGQARPPAMDRVRVAAADLPEGMLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNA-MQELDGVLVRVPILKGDPIRLEKLVDRG-NGG 120
            + L W   P + V  G +      +A   +L G ++R  +  G  +    ++     G 
Sbjct: 57  ESDLAWKEVPHKQVLQGALVKGDAESAEATDLKGDVLRHAVTAGTMLGTADVIPPNAPGF 116

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVVL 171
           L++ L  G RA ++ I   S   G+I+P D+VDV++ + L           R      V+
Sbjct: 117 LAAALKPGMRAISVAIDDVSGNAGLIQPGDYVDVLLTQQLDGPVHAPQNTARSVESETVV 176

Query: 172 SNIRVIAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           + +RV+A+         D+ +      T T E+TP  A+ +  A  +  LSL LRS A  
Sbjct: 177 NRVRVLAVGSIFQRPKADAADANTRARTVTFEVTPHTAQVIAVATHLGSLSLALRSFATS 236

Query: 227 NPSSSEDSD 235
           + +    ++
Sbjct: 237 DRNPPVIAN 245


>gi|159043679|ref|YP_001532473.1| SAF domain-containing protein [Dinoroseobacter shibae DFL 12]
 gi|157911439|gb|ABV92872.1| SAF domain protein [Dinoroseobacter shibae DFL 12]
          Length = 280

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 5/231 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58
           M+L   + +++    A  A ++A      +      ++         + V +    +  G
Sbjct: 1   MRLVFGLVLLLGVGLAGFAVMMAKDRFDQYQTVVAKQQQKLAAAVDVVEVYVMDTPIRYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117
             +  + +  V +P + + +G            E         +   +P+   K+ +   
Sbjct: 61  EKIGKDDVRKVRWPADALPEGAFQTEEGLFPDAEGRLRTATRAMEANEPVLAVKVTEPGQ 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
           + G+SS L KG RA  + ++++S V G ++P D VDV    S   +     ++ S++++I
Sbjct: 121 DAGVSSRLGKGMRAFAISVTVTSGVSGFLRPGDRVDVYWSGSSKGQD-VTKLIQSSMQII 179

Query: 178 AIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
            ID N D D     +  T T+E TP Q   L  AQ    LSL L   AD  
Sbjct: 180 GIDQNADMDRTAPTIARTVTVEATPQQVAGLAQAQRTGSLSLSLVGAADDA 230


>gi|89899602|ref|YP_522073.1| Flp pilus assembly CpaB [Rhodoferax ferrireducens T118]
 gi|89344339|gb|ABD68542.1| Flp pilus assembly CpaB [Rhodoferax ferrireducens T118]
          Length = 286

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 109/250 (43%), Gaps = 25/250 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ + ++ +  L A  +A R +                +   + ++  D+ +G  
Sbjct: 1   MRSRGILMLFIAVIAGLAAVFLATRWMQG-----------QGGEGGRIAVANTDIELGGR 49

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           ++P ++    +P  +   G   +  +      L+G +V V + +G+P+   +L      G
Sbjct: 50  ISPEMIRMADWPLGSTPTGAYKEAAK------LEGRVVLVSMQRGEPLIEARLAPIGTKG 103

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVLSN 173
           GLS+++P+GKRA T+ ++    V G   P   VDV++       +          +VL  
Sbjct: 104 GLSAVVPQGKRAMTVRVNDVVGVAGFALPGTFVDVMVNTQDEGGQRNDRDRSVSKIVLER 163

Query: 174 IRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           I V+A+    D D  +  V +  TLE+TP  A+ L  A+SV  LSLVLR+  D    ++ 
Sbjct: 164 ILVLAVAQEADRDSTKPRVVNAVTLEVTPRDAEMLDLARSVGTLSLVLRNQTDPKGVAAT 223

Query: 233 DSDVWDVQEE 242
                     
Sbjct: 224 GGATKAELLG 233


>gi|46580523|ref|YP_011331.1| hypothetical protein DVU2118 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449942|gb|AAS96591.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234262|gb|ADP87116.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris RCH1]
          Length = 272

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 18/250 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ T ++ ++ + V ALVAG++  R V  + V  +          + ++++  D+  G  
Sbjct: 1   MRRTAVIQVIAALVLALVAGVLVFRFVQVNRVAQQ----TQQPPGVVLVVAAVDMEKGAK 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118
           +  + L+   F   +   G   D       + L G ++  P+  G+ I   +L+     +
Sbjct: 57  IRADQLKTSTFLSASAPPGGFTD------AKSLVGRVLATPVTTGEVITETRLLPADATS 110

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIR 175
           GG+S+++  G RA  +  +    + G I+P + VD+++      R+       V+L+ I+
Sbjct: 111 GGVSTMIAPGMRAVAVKGNKVMGLAGFIRPGNRVDIMVTIDDETREKAKARTKVILAGIK 170

Query: 176 VIAIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           V+A    +  +      S     TLE+TP QA+ L  A S  +L   LR+ AD  P  + 
Sbjct: 171 VLATGTELRQEGDDTATSPVEVYTLEVTPEQAELLSLAASRGELHFALRNPADDLPVRTA 230

Query: 233 DSDVWDVQEE 242
            +DV     +
Sbjct: 231 GTDVPATLRQ 240


>gi|186474102|ref|YP_001861444.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815]
 gi|184196434|gb|ACC74398.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815]
          Length = 282

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 123/254 (48%), Gaps = 30/254 (11%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  R L+ ++V+    L A + A R +          + +       V+I+  D+++G 
Sbjct: 1   MKNARALVMLLVATAAGLAAVVFAARWM----------VQQTSTSTTKVVIASADMSLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            V+P +L+   +P  +V  G  +DV      ++L+G +++  + +G+P+   KL   G  
Sbjct: 51  RVSPEMLKVSDWPAGSVPPGTFNDV------KKLEGRVLKASLSRGEPVLEAKLSPVGTL 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----------RKPTV 167
           GGLS+++ +GKRA T+ ++    V G   P ++VD+++                  +   
Sbjct: 105 GGLSAVINEGKRAITVRVNDVIGVAGFALPGNYVDILVNTEKENASREGAGASGRDQNIS 164

Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            +VL  I V+A+      DE +  V    TLE+TP QA+ +  A+S+  LSLVLR+  D 
Sbjct: 165 KIVLEKILVLAVAQEAGRDETKPKVVDAVTLEVTPEQAEKIDLARSIGSLSLVLRNQVDP 224

Query: 227 NPSSSEDSDVWDVQ 240
             +S+  +    + 
Sbjct: 225 QDTSTAGATKATLL 238


>gi|78357402|ref|YP_388851.1| putative pilus assembly protein CpaB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219807|gb|ABB39156.1| putative pilus assembly protein CpaB [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 272

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 106/248 (42%), Gaps = 18/248 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK + L+ I V+ V AL AG +  R++                  + + ++  D+  G  
Sbjct: 1   MKKSSLIQIAVALVLALGAGALVFRMMQ----APARTAQPPKVASVMLAVAAADMTKGTR 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGN 118
           +    +    F  +    G        ++  EL G ++   +  G+PI   +LV+     
Sbjct: 57  IRAEQITMAEFLLQTAPAGAF------SSADELTGRVLASAVTAGEPITPARLVEDTVRY 110

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---ERKPTVTVVLSNIR 175
           GG+S+++  GKRA  +  +    + G I+P +HVDV++    +   + K     VL NIR
Sbjct: 111 GGVSTMISPGKRAVAVKGNNVLGMAGFIRPGNHVDVLVTIDDNRRPQDKAVTKTVLENIR 170

Query: 176 VIAIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           V+A    ++        S     TLE+ P + + L  A S  ++   LR+ AD +   + 
Sbjct: 171 VLATGTELEQQGDDTATSPVDIYTLEMLPREVEVLSLAASRGEVHFSLRNPADTDSVKTA 230

Query: 233 DSDVWDVQ 240
            +DV    
Sbjct: 231 GTDVPHAL 238


>gi|254418623|ref|ZP_05032347.1| Flp pilus assembly protein CpaB [Brevundimonas sp. BAL3]
 gi|196184800|gb|EDX79776.1| Flp pilus assembly protein CpaB [Brevundimonas sp. BAL3]
          Length = 305

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/298 (25%), Positives = 122/298 (40%), Gaps = 45/298 (15%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R+  I ++ V AL   ++   + +                   +L++  +L  G  
Sbjct: 1   MKPARIAVICIAAVSALGLALVVRAMGNGEPAAPAAAAPVETRPMAKILVAAKNLEPGKR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQ----------------------------- 91
           +    L W  +P + V   FI D   P   +                             
Sbjct: 61  LAEADLAWKDWPVDEVNPAFITDGSTPIPAKPAPEGAGEKAGAAVERVAEAAGQMAGPGA 120

Query: 92  --ELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148
             +  G +VR PIL G+PI   K+V    +G L++ L  G RA  + +++ SA GG I P
Sbjct: 121 KSDYIGSVVREPILAGEPIVGRKIVRAGDSGYLAAYLEPGMRAMAIAVTVESAAGGFILP 180

Query: 149 NDHVDVVMVRSL-----------SERKPTVTVVLSNIRVIAIDHN--IDSDERVLVGSTA 195
            D VDVV+               +  K +   V+ N++V+AID +     D + +VG+TA
Sbjct: 181 GDRVDVVLTVQNEGGGSAVEGGGATAKYSSATVMQNVKVLAIDQSTRAGDDAQAVVGATA 240

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253
           TLE+ P  A  L  A+S  +LSL LRS AD    S        V    + +++ + G 
Sbjct: 241 TLEVRPQDAVLLAQAKSEGELSLSLRSYADTAGPSGATRAPRAVASASRSVRVYRGGE 298


>gi|84501677|ref|ZP_00999849.1| CpaB family protein [Oceanicola batsensis HTCC2597]
 gi|84390298|gb|EAQ02857.1| CpaB family protein [Oceanicola batsensis HTCC2597]
          Length = 265

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 7/231 (3%)

Query: 25  RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84
            L          V          V +    L  G  ++   +  + +P   + +G   + 
Sbjct: 5   FLAQQAAAAEAAVAEPVTVPTKMVYVVNRQLKYGEQLSRADVRQIEWPAAAIPEGVFHEE 64

Query: 85  HQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVG 143
           +      +     V   + + + +   K+     + GL+S L KG RA  + + ++S V 
Sbjct: 65  NTLFPENDPRPRFVLRTMERNEAVLTGKVTAPGEDAGLTSRLEKGMRAFAIKVDVASGVS 124

Query: 144 GMIKPNDHVDVVMVR-----SLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATL 197
           G ++P D VD+           +       ++ + I++IA+D   + D    ++  T T+
Sbjct: 125 GFLRPGDKVDIYWTGRVSGMDRNASGEVTKLIETGIQLIAVDQMANGDHSEAMIARTVTV 184

Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQI 248
            + P Q  AL  AQS  +L+L L    D   + + + D   +    +  QI
Sbjct: 185 AVNPQQVGALAQAQSTGRLALSLVGNLDDTVAEAIEVDQRSLLGLSEAPQI 235


>gi|115361032|ref|YP_778169.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD]
 gi|115286360|gb|ABI91835.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD]
          Length = 281

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 23/248 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R LM ++++ V  L A + A R +      +   +               DL +G 
Sbjct: 1   MKNSRALMMLIIAMVAGLAAVVFASRWLMHTSSSSVTSVAVATT----------DLNLGE 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            + PN +  V++P  +V  G   D       +EL+G +VR  + +G+P+   KL      
Sbjct: 51  PLGPNQIHMVSWPSGSVPTGAFAD------TKELEGRVVRTSLARGEPVIESKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174
           GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I
Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ 
Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTDG 224

Query: 234 SDVWDVQE 241
           +    +  
Sbjct: 225 ATKLTLLG 232


>gi|262171231|ref|ZP_06038909.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451]
 gi|261892307|gb|EEY38293.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451]
          Length = 250

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 16/236 (6%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            A   A + +       + V        +   I+  D+  G V+    L      +    
Sbjct: 19  AAVFFAKQWMDKQMTPQQAVEVVEREPVV---IAAIDIPAGSVIEQQHLTTKLLEKSW-- 73

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDI 136
                ++ Q +  + L G +V  PI +G+ I +++L   G G  L+SL+P+  RA T+ +
Sbjct: 74  ----RNISQFSDPKVLVGQIVTGPIFQGEIIYVQRLTVPGEGSTLASLIPEKMRAITIRV 129

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195
           +    V G + P + VDV+   S S+       VL +I+V+A+D    S E + ++    
Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAV 189

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           TLE+TP QA+ L++AQS  ++ L LR+  +     +              + IIK 
Sbjct: 190 TLEVTPEQAEKLLSAQSKGEIQLTLRNPHEPEEKVAVTRRYVA-----PSVTIIKG 240


>gi|120602160|ref|YP_966560.1| SAF domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120562389|gb|ABM28133.1| SAF domain [Desulfovibrio vulgaris DP4]
          Length = 272

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 113/250 (45%), Gaps = 18/250 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ T ++ ++ + V ALVAGI+  R V  + V  +          + +++S  D+  G  
Sbjct: 1   MRRTAVIQVIAALVLALVAGILVFRFVQVNRVAQQ----TQQPPGVVLVVSAVDMEKGAK 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118
           +  + L+   F   +   G   D       + L G ++  P+  G+ I   +L+     +
Sbjct: 57  IRADQLKTSTFLSASAPPGGFTD------AKSLVGRVLATPVTTGEVITETRLLPADATS 110

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIR 175
           GG+S+++  G RA  +  +    + G I+P + VD+++      R+       V+L+ I+
Sbjct: 111 GGVSTMIAPGMRAVAVKGNKVMGLAGFIRPGNRVDIMVTIDDETREKAKARTKVILAGIK 170

Query: 176 VIAIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           V+A    +  +      S     TLE+TP QA+ L  A S  +L   LR+ AD  P  + 
Sbjct: 171 VLATGTELRQEGDDTATSPVEVYTLEVTPEQAELLSLAASRGELHFALRNPADDLPVRTA 230

Query: 233 DSDVWDVQEE 242
            +DV     +
Sbjct: 231 GTDVPATLRQ 240


>gi|107028249|ref|YP_625344.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054]
 gi|116687160|ref|YP_840407.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424]
 gi|105897413|gb|ABF80371.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054]
 gi|116652875|gb|ABK13514.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424]
          Length = 279

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 22/249 (8%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
               LM +VV+ V  L A + A R +          +  + +   +V ++  DL +G  +
Sbjct: 3   NSRALMMLVVAMVAGLAAVVFASRWL----------VQTSTSSVTSVAVATTDLNLGEPL 52

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120
            PN +  V++P  +V  G   D       + L+G +VR  + +G+P+   KL      GG
Sbjct: 53  GPNQIHMVSWPAGSVPTGAFTD------TKTLEGRVVRTSLARGEPVIESKLAPVGTKGG 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRV 176
           LS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I V
Sbjct: 107 LSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILV 166

Query: 177 IAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           +A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    ++  + 
Sbjct: 167 LAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTGGAT 226

Query: 236 VWDVQEEGK 244
              +  +  
Sbjct: 227 KLTLLGKEP 235


>gi|254293213|ref|YP_003059236.1| Flp pilus assembly protein CpaB [Hirschia baltica ATCC 49814]
 gi|254041744|gb|ACT58539.1| Flp pilus assembly protein CpaB [Hirschia baltica ATCC 49814]
          Length = 321

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 16/242 (6%)

Query: 30  HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNA 89
                 EV        + VL++  DL VG  V    L W ++PEE+    F  +   P+A
Sbjct: 38  QTATLSEVGQAEQIPVLKVLVATTDLKVGQFVKEGQLSWQSWPEESNTSSFFTEEMSPDA 97

Query: 90  MQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKP 148
           ++ + G +VR  ++ G+P+  EK+V  G  G ++++L  G RA  ++IS  +A GG I P
Sbjct: 98  IEAMQGAVVRTNMMAGEPLTSEKVVHPGEAGFMAAVLTPGMRAVAVEISAETAAGGFIFP 157

Query: 149 NDHVDVVMVRSLS-------ERKPTVTVVLSNIRVIAID----HNIDSDERVLVGSTATL 197
           NDHVDV++   +          +  +  +L+N+RV+AID       +     +VG  ATL
Sbjct: 158 NDHVDVLLTFEVDVERPTGITEETAIDTILNNVRVLAIDGYYRPVEEEAGDAVVGHRATL 217

Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD----VWDVQEEGKEIQIIKAGV 253
           EL+   A  L+AAQ    LSLVLRSI++L+  S   ++              +++ + GV
Sbjct: 218 ELSKQDAMVLMAAQERGDLSLVLRSISELSGPSGATANGLAMASRRGAGSDGVRVFQKGV 277

Query: 254 IV 255
            V
Sbjct: 278 SV 279


>gi|170701162|ref|ZP_02892135.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10]
 gi|170133943|gb|EDT02298.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10]
          Length = 281

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 23/248 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R LM ++++ V  L A + A R +      +   +               DL +G 
Sbjct: 1   MKNSRALMMLIIAMVAGLAAVVFASRWLMNTSSSSVTSVAVATT----------DLNLGE 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            + PN +  V++P  +V  G   D       +EL+G +VR  + +G+P+   KL      
Sbjct: 51  PLGPNQIHMVSWPSGSVPTGAFAD------TKELEGRVVRTSLARGEPVIESKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174
           GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I
Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ 
Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTDG 224

Query: 234 SDVWDVQE 241
           +    +  
Sbjct: 225 ATKLTLLG 232


>gi|258621446|ref|ZP_05716480.1| Pilus assembly protein [Vibrio mimicus VM573]
 gi|262165920|ref|ZP_06033657.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223]
 gi|258586834|gb|EEW11549.1| Pilus assembly protein [Vibrio mimicus VM573]
 gi|262025636|gb|EEY44304.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223]
          Length = 250

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 16/236 (6%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            A   A + +       + V        +   I+  D+  G V+    L      +    
Sbjct: 19  AAVFFAKQWMDKQMTPQQAVEVVEREPVV---IAAIDIPAGSVIEQQHLTTKLLEKSW-- 73

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDI 136
                ++ Q +  + L G +V  PI +G+ I +++L   G G  L+SL+P+  RA T+ +
Sbjct: 74  ----RNISQFSDTKVLVGQIVTGPIFQGEIIYVQRLTVPGEGSTLASLIPEKMRAITIRV 129

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195
           +    V G + P + VDV+   S S+       VL +I+V+A+D    S E + ++    
Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAV 189

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           TLE+TP QA+ L++AQS  ++ L LR+  +     +              + IIK 
Sbjct: 190 TLEVTPEQAEKLLSAQSKGEIQLTLRNPHEPEEKVAVTRRYVA-----PSVTIIKG 240


>gi|323702114|ref|ZP_08113782.1| Flp pilus assembly protein CpaB [Desulfotomaculum nigrificans DSM
           574]
 gi|323532996|gb|EGB22867.1| Flp pilus assembly protein CpaB [Desulfotomaculum nigrificans DSM
           574]
          Length = 234

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 19/236 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+    + ++++ +F L A     + +             +   F  V++ K  +    +
Sbjct: 1   MRNK--LILILAILFGLAAAFGVFKYLDGLKKSY-----RSSGNFKQVVVPKQTIGPNTM 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRGN 118
           +T  +++    P E +  G   D       +++ G + R  +   +PI L +L       
Sbjct: 54  LTAQMVKVKDIPVEMIQPGTAMD------TKDVVGKVTRSDLYPEEPILLSRLHQDKDST 107

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVI 177
           G L+  +P G+RA T+++   S V GM+KP DHVD+++      E+    +++L NI+V+
Sbjct: 108 GELALAIPTGQRALTVEVDAVSGVAGMLKPGDHVDILVTFDYEVEKTTLTSLLLQNIKVL 167

Query: 178 AIDHN---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           A+  +       ++ +   T TL +TP QA  L       K+ L+LRS  D   ++
Sbjct: 168 AVGQSLVSAQKGDQKVNTQTVTLAVTPEQAPPLTLGSERGKIRLMLRSPKDEGTAN 223


>gi|294139869|ref|YP_003555847.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12]
 gi|293326338|dbj|BAJ01069.1| Flp pilus assembly protein CpaB, putative [Shewanella violacea
           DSS12]
          Length = 288

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 110/269 (40%), Gaps = 27/269 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M + RLM   V    A + G+             +++  +       +L++K  +  G  
Sbjct: 1   MTVKRLMYFSVFISLAGLIGLYL-----SISAPQKQINIKTENVRHEILVAKQLIKSGQR 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
            + ++ EW A  E+ + +           + + +  ++      G  + L   +    GG
Sbjct: 56  FSASLFEWQALNEDQLTNLVDYIDRDKFDILKFNDSVLVSSFTAGHIMSLSDFLKPEEGG 115

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVV 170
            LS  L  G RA ++ +   +A  G++ P D VDV++          R    +   V  +
Sbjct: 116 FLSVSLRPGYRAVSVPVDQVTANSGLVGPGDFVDVLLLASQEQELRTRGNDTQSLYVKTI 175

Query: 171 LSNIRVIAIDHNIDSDERVLV----------GSTATLELTPMQAKALVAAQSVAKLSLVL 220
             N+RV+A +H +  ++ +             S  TLE+ P QA  ++ A  +  L+LVL
Sbjct: 176 ARNVRVLAFNHAVKVEQYIAAQKEYKGFIPDDSAVTLEVLPKQANRIILANQLGILTLVL 235

Query: 221 RSIAD--LNPSSSEDSDVWDVQEEGKEIQ 247
           RS  D     +S +  ++ D+  + K +Q
Sbjct: 236 RSNNDSVDEANSQDQINIADIFPDIKRVQ 264


>gi|167584956|ref|ZP_02377344.1| Flp pilus assembly CpaB [Burkholderia ubonensis Bu]
          Length = 280

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 22/247 (8%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
               +  ++++ V  L A   A R +                    V ++  DL +G  +
Sbjct: 3   NTRAITMLIIAMVAGLAAVAFASRWLVQTSTSAV----------TQVAVATTDLNLGEPI 52

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGG 120
            P  +  +++P  +V  G   D       + L+G +VR  + +G+P+   KL      GG
Sbjct: 53  GPAQIRTISWPTGSVPPGAFTD------TKSLEGRVVRTSLARGEPVLEAKLAPLGTKGG 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRV 176
           LS+++  G RA T+ ++    V G   P ++VDV++          ++    +VL +I V
Sbjct: 107 LSAVIGAGNRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPGKTDNQQSISKIVLEHILV 166

Query: 177 IAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           +A+   +  D+ +  V +  TLE++P QA+ L  A+SV  LSLVLR+  D    +++ + 
Sbjct: 167 LAVAQQVSRDDTQPKVVNAVTLEVSPEQAEKLDVARSVGTLSLVLRNQVDKQTLNTDGAT 226

Query: 236 VWDVQEE 242
              +   
Sbjct: 227 KLTLLGR 233


>gi|187919323|ref|YP_001888354.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
 gi|187717761|gb|ACD18984.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
          Length = 269

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 118/248 (47%), Gaps = 25/248 (10%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            ++++ +  L A + A R +          ++++      V+++  D+ +G  + P+ L+
Sbjct: 1   MLLIATLAGLTAVVFASRWM----------VSQSSNATTRVVVAAADINLGQRIGPDYLK 50

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126
              +P  +V  G   D+ + +      G +++  +L+G+PI   KL   G  GGLS+++ 
Sbjct: 51  LTDWPSNSVPPGSYSDIQKLD------GRVLKESLLRGEPILDAKLTPVGTLGGLSAVIG 104

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAI 179
           +GKRA T+ ++    V G   P ++VD+++      R P          +VL  I V+A+
Sbjct: 105 EGKRAITVRVNDVIGVAGFALPGNYVDIIVNTQKDGRDPGATRDQNISKIVLEKILVLAV 164

Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
              +  DE +  V    TLE+ P QA+ +  A+S+  LSLVLR+  D     +  +    
Sbjct: 165 AQEVGRDETKPKVVDAVTLEVLPEQAEKIDLARSIGTLSLVLRNQIDPKAIDTAGATKAS 224

Query: 239 VQEEGKEI 246
           + +    +
Sbjct: 225 LLQTPVAV 232


>gi|170734869|ref|YP_001773983.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3]
 gi|169820907|gb|ACA95488.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3]
          Length = 279

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 22/249 (8%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
               LM +VV+ V  L A + A R +          +  + +   +V ++  DL +G  +
Sbjct: 3   NSRALMMLVVAMVAGLAAVVFASRWL----------VQTSTSSVTSVAVASTDLNLGEPL 52

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120
            PN +  V++P  +V  G   D       + L+G +VR  + +G+P+   KL      GG
Sbjct: 53  GPNQIHMVSWPAGSVPTGAFTD------TKALEGRVVRTSLARGEPVIESKLAPVGTKGG 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRV 176
           LS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I V
Sbjct: 107 LSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILV 166

Query: 177 IAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           +A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    ++  + 
Sbjct: 167 LAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTGGAT 226

Query: 236 VWDVQEEGK 244
              +  +  
Sbjct: 227 KLTLLGKEP 235


>gi|320155488|ref|YP_004187867.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O]
 gi|319930800|gb|ADV85664.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O]
          Length = 248

 Score =  149 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 18/236 (7%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            A   A + +       ++V        +   I+  ++  G V+ P  L      +    
Sbjct: 19  AAVFFAKQWMDKQLTPQQDVEVVEREPVV---IAAIEIPAGSVIEPQHLTTKLLEKSW-- 73

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDI 136
                ++ Q    +EL G +V   I  G+ I  ++L   G G  L++L+P+ KRA T+ +
Sbjct: 74  ----RELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRV 129

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195
           +    V G + P + VDV+   S S+       VL +I+V+A+D    + E + ++    
Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTISYSKGSAVTKTVLKDIKVLAVDQTARTKENKPIIVRAV 189

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           TLE+TP QA+ L++A+S  ++ L LR+  +         +    +     + IIK 
Sbjct: 190 TLEVTPDQAEKLLSAKSKGEIQLTLRNPHEPE-------EKVVRRYVAPSVTIIKG 238


>gi|254512153|ref|ZP_05124220.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium KLH11]
 gi|221535864|gb|EEE38852.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium KLH11]
          Length = 290

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 104/259 (40%), Gaps = 14/259 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP----------AKFINVLI 50
           M+    + +++    A  A  +A   ++ +  +  +                   ++VL+
Sbjct: 1   MRSVFGLVLIIGVALAGGAVYMAREYITDNQAKLAQERKLREEALANAKAGLVPTVDVLV 60

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           S   L  G  +T   +  V +PE  + +G   ++         +   V   + K + I  
Sbjct: 61  SNRSLKYGEQLTQEDIRVVQWPENAIPEGTFVEIAALFPDTRDNERFVLRAMEKDEAIMA 120

Query: 111 EKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTV 167
            K+   G   GL S LPKG RA  + + ++S V G ++P D VDV          R    
Sbjct: 121 VKVTAPGETAGLRSQLPKGMRAFAISVDVASGVSGFLRPGDTVDVYWTGAVRSEGRGEIT 180

Query: 168 TVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            +VL+NI ++A+D     D     +  T T+  TP Q  AL  AQ+  ++SL L    D 
Sbjct: 181 RLVLTNIELVAVDQTAGLDVTGTTIARTVTVAATPQQIAALAQAQNTGRMSLALVGAQDD 240

Query: 227 NPSSSEDSDVWDVQEEGKE 245
             +   + D   +    ++
Sbjct: 241 KVAEVVEVDQRALLGIEEQ 259


>gi|172065272|ref|YP_001815984.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
 gi|171997514|gb|ACB68431.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
          Length = 281

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 23/248 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK +R +M ++++ V  L A + A R +      +   +               DL +G 
Sbjct: 1   MKNSRAVMMLIIAMVAGLAAVVFASRWLMNTSSSSVTSVAVATT----------DLNLGE 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            + PN +  V++P  +V  G   D       +EL+G +VR  + +G+P+   KL      
Sbjct: 51  PLGPNQIHMVSWPSGSVPTGAFAD------TKELEGRVVRTSLARGEPVIESKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174
           GGLS+++  G RA T+ ++    V G   P ++VDV++     +  ++ +    +VL +I
Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+    V +  TLE+TP QA+ L  A+SV  LSLVLR+  D    +++ 
Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTDG 224

Query: 234 SDVWDVQE 241
           +    +  
Sbjct: 225 ATKLTLLG 232


>gi|37680845|ref|NP_935454.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016]
 gi|37199594|dbj|BAC95425.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016]
          Length = 248

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 18/236 (7%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            A   A + +       ++V        +   I+  ++  G V+ P  L      +    
Sbjct: 19  AAVFFAKQWMDKQLTPQQDVEVVEREPVV---IAAIEIPAGSVIEPQHLTTKLLEKSW-- 73

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDI 136
                ++ Q    +EL G +V   I  G+ I  ++L   G G  L++L+P+ KRA T+ +
Sbjct: 74  ----RELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRV 129

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195
           +    V G + P + VDV+   S S+   +   VL +I+V+A+D    + E + ++    
Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSASTKTVLKDIKVLAVDQTARTKENKPIIVRAV 189

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           TLE+TP QA+ L++A+S  ++ L LR+  +         +    +     + IIK 
Sbjct: 190 TLEVTPDQAEKLLSAKSKGEIQLTLRNPHEPE-------EKVVRRYVAPSVTIIKG 238


>gi|27365105|ref|NP_760633.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6]
 gi|27361251|gb|AAO10160.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6]
          Length = 248

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 18/236 (7%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            A   A + +       ++V        +   I+  ++  G V+ P  L      +    
Sbjct: 19  AAVFFAKQWMDKQLTPQQDVEVVEREPVV---IAAIEIPAGSVIEPQHLTTKLLEKSW-- 73

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDI 136
                ++ Q    +EL G +V   I  G+ I  ++L   G G  L++L+P+ KRA T+ +
Sbjct: 74  ----RELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRV 129

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195
           +    V G + P + VDV+   S S+       VL +I+V+A+D    + E + ++    
Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSAVTKTVLKDIKVLAVDQTARTKENKPIIVRAV 189

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           TLE+TP QA+ L++A+S  ++ L LR+  +         +    +     + IIK 
Sbjct: 190 TLEVTPDQAEKLLSAKSKGEIQLTLRNPHEPE-------EKVVRRYVAPSVTIIKG 238


>gi|149200846|ref|ZP_01877821.1| Flp pilus assembly CpaB [Roseovarius sp. TM1035]
 gi|149145179|gb|EDM33205.1| Flp pilus assembly CpaB [Roseovarius sp. TM1035]
          Length = 289

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 106/264 (40%), Gaps = 13/264 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A  +A   +  +  Q   E        + +++ ++   L  G
Sbjct: 1   MRAVFGLVLIVGLGLAGFAVYMAKNYIDGYQRQLEAERQQRAPVIETVDIFVATRALQYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +  + +   AFP+ ++ +G      +     E         +   +PI   K+ + G 
Sbjct: 61  EALDKDAVRLTAFPKTSLPEGVFKATEELFPKGETVARRALRRMEMNEPILAVKVTEPGA 120

Query: 119 G-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVT 168
             G++S L +G RA  + + ++S V G ++P D +D+    S+                 
Sbjct: 121 EVGITSQLERGMRAFAIKVDVTSGVSGFLRPGDTIDIYWTGSVGAGNMRTEGNSMGEVTK 180

Query: 169 VVLSNIRVIAIDHNIDSDERVLV-GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           ++ + +++IA+D   D D    V   T T+ + P Q  AL  AQS  +LSL L    D  
Sbjct: 181 LIENGVKLIAVDQVADMDTSETVIARTVTVAVKPQQVAALAQAQSTGRLSLSLVGALDDT 240

Query: 228 PSSSEDSDVWDVQEEGKEIQIIKA 251
            +   + D   +     E  I +A
Sbjct: 241 VAEVIEVDQHRLLGITAEAVIEQA 264


>gi|193213116|ref|YP_001999069.1| Flp pilus assembly protein CpaB [Chlorobaculum parvum NCIB 8327]
 gi|193086593|gb|ACF11869.1| Flp pilus assembly protein CpaB [Chlorobaculum parvum NCIB 8327]
          Length = 263

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 118/239 (49%), Gaps = 18/239 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + + + I ++ V   +A  IA R+ +           +       V+I    +  G V+ 
Sbjct: 1   MKKPVIIAIALVLGAMAAYIAARMST----------VQTDGSEAKVVIVAMPIDAGKVIA 50

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121
           P+ ++ V +P   V               ++ G + RV ++ G+P+  +KL  +G  GGL
Sbjct: 51  PDQIKAVQWPSSAVPLNAFARTA------DVVGRVARVSMIAGEPVLPDKLALKGAKGGL 104

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           +S LP+GKRA T+ ++   AV G   P  +VD+++      R+     VLS ++V+A+D 
Sbjct: 105 ASTLPEGKRAITVKVNEVIAVAGFALPGSYVDILVNGKDDNRRSFSRTVLSRVKVLAVDQ 164

Query: 182 NIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
               D ++  + +  T+EL+P +A+ L  A+++  LSLVLR+  D    +SE   + D+
Sbjct: 165 VTTGDPDKPKLVNAVTVELSPREAEKLDLARNIGNLSLVLRNELDTAEVNSEGVRLPDI 223


>gi|194335912|ref|YP_002017706.1| Flp pilus assembly protein CpaB [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308389|gb|ACF43089.1| Flp pilus assembly protein CpaB [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 263

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 20/247 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  +   + ++ +   +A  +A R +S                   V++ +  +  G  
Sbjct: 1   MKPQQ-FVLAIALILGAMAAFLAARWMS-----------VAQTSMSRVVVVEQPIEAGKA 48

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +  + +  + +P   V       +        + G +  V ++ G+P+   KL      G
Sbjct: 49  IKAHQIRSIDWPGSAVPRDASTRIAS------VVGRIALVSMMPGEPVLPGKLAPTTATG 102

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
           GLSS++PKGKRA T+ ++   AV G   P  +VDV++    + ++P    VL  ++V+AI
Sbjct: 103 GLSSIIPKGKRAITVKVNEVIAVAGFALPGSYVDVLVSSKDANQQPFSVTVLLRVKVLAI 162

Query: 180 DHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
                +D ++  V +  TLELTP +A+ L  A+++  LSLVLR+  D    +S    + D
Sbjct: 163 AQETTADRDKPKVVNAVTLELTPHEAEKLDLARNIGALSLVLRNEFDTGKINSAGVRLSD 222

Query: 239 VQEEGKE 245
           +      
Sbjct: 223 IIYSQSA 229


>gi|302381757|ref|YP_003817580.1| Flp pilus assembly protein CpaB [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192385|gb|ADK99956.1| Flp pilus assembly protein CpaB [Brevundimonas subvibrioides ATCC
           15264]
          Length = 310

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 125/303 (41%), Gaps = 50/303 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPH--HVQTEEVITENPAKFINVLISKGDLAVG 58
           MK  R+  I ++ V A+    +   + SP                    VL++  DLA G
Sbjct: 1   MKPARIAVICIAAVSAIGLAFVVRAMGSPSGEPTAVATAAPAPTRPMAKVLVAARDLAPG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPN------------------------------ 88
             +    LEW  +P + V   FI D   P                               
Sbjct: 61  QRLVEADLEWKDWPVDEVNPAFITDGSVPVPAAAAPEGEAAPATTDTTAESAVARVTRAA 120

Query: 89  -------AMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISS 140
                  A  +  G +VR PIL G+PI   K+V    +G +++ L  G RA  + +S+ S
Sbjct: 121 NDLTTGGAKADYFGSVVREPILAGEPIVGRKIVRAGDSGYMAAYLEPGMRAMAIGVSVES 180

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKP--------TVTVVLSNIRVIAIDHN--IDSDERVL 190
           A GG I P D VDV++                    +V+ N++V+AID +     D++ +
Sbjct: 181 AAGGFILPGDRVDVIVTVEQQAGNDDDAGRAKFASRIVMQNVKVLAIDQSTRAGDDQQAV 240

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
           VG+TATLE+ P  A+ +  A++   LSLVLRS AD +  S   S      E    I++ +
Sbjct: 241 VGATATLEVAPQDAEVVALAKAAGTLSLVLRSYADTSGPSGRVSMPPRASERSTAIRVFR 300

Query: 251 AGV 253
            G 
Sbjct: 301 GGE 303


>gi|150377241|ref|YP_001313836.1| SAF domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150031788|gb|ABR63903.1| SAF domain protein [Sinorhizobium medicae WSM419]
          Length = 263

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 80/240 (33%), Positives = 125/240 (52%), Gaps = 11/240 (4%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + R++ ++++      A  +A+ +     V+  EV      +   VL++  +L  G  + 
Sbjct: 1   MIRIVILLLALASGGAASWLALGMGDEPSVEVAEVEEAPAQE---VLVAAAELKRGAAIE 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            N L W  + E  +   FI    + +A  EL G L     + G+PIR +KL  RG G LS
Sbjct: 58  ENHLRWQPW-EGEIPPVFISRSSRADATTELKGSLALSDFVAGEPIREDKLAQRGTGYLS 116

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVI 177
           SLLP GKRA  + ++  S  GG I PNDHVDVV        +    K     +LSNIRV+
Sbjct: 117 SLLPSGKRAIAVRVTAESTAGGFILPNDHVDVVHTAVRPDAAGDAGKVVSRAILSNIRVL 176

Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+D  +    D   ++G TATLE+ P Q  A+ AA++   +SL LR+I+D + +S  +++
Sbjct: 177 AVDQTVSQAADGTSVIGKTATLEVNPEQIAAVAAAEASGTVSLALRAISDNHEASVVEAE 236


>gi|304320646|ref|YP_003854289.1| CtpC protein [Parvularcula bermudensis HTCC2503]
 gi|303299548|gb|ADM09147.1| CtpC protein [Parvularcula bermudensis HTCC2503]
          Length = 253

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/258 (27%), Positives = 116/258 (44%), Gaps = 9/258 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVGM 59
           MK  RL+ ++V+      A  +      P           +       V+ S  D+  G 
Sbjct: 1   MKAARLLILLVAIAAGGAAFFMLAGNDEPAVTTAVPTAPIQPRMAMAEVMFSAKDIPQGA 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL-EKLVDRGN 118
           +++  +++WV +P  NV + FI    Q + +  L     R+ I    PI     +     
Sbjct: 61  ILSEGMVKWVKWPSANVPEFFITKDDQ-DFIDNLGLRRARLRIDANQPIYGVNTVAHGDR 119

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
           G L+S+L  G RA T  + +    GG I P D VD+       + +   + +L NIRV+A
Sbjct: 120 GMLASILTPGMRAVTARMGLEETSGGFILPGDRVDIFATGIGDDGQMETSAILRNIRVLA 179

Query: 179 IDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           ID   +   ++  L GST T EL+P Q  + + A+   +L+LVLRS+ DL+P +      
Sbjct: 180 IDQVTNVTDEQTALNGSTVTFELSPAQVPSFIGARDNKQLTLVLRSVYDLSPETGMPI-- 237

Query: 237 WDVQEEGKEIQIIKAGVI 254
             V    +E+ +I+ G  
Sbjct: 238 --VDTSPEEVVVIRFGQG 253


>gi|323529414|ref|YP_004231566.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
 gi|323386416|gb|ADX58506.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
          Length = 278

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 14/204 (6%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
             V ++  ++++G  +  N++  V +P  +V  G   D       + LDG +VR  +  G
Sbjct: 37  TPVAVATAEVSLGQPLNANMIRTVNWPTASVPPGAFKDP------KALDGRVVRTSLEPG 90

Query: 106 DPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VR 158
           +P+   KL  +   GGLS+++ +GKRA T+ ++    V G   P ++VDV++       +
Sbjct: 91  EPVIESKLAPQGTKGGLSAVIGEGKRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPESK 150

Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLS 217
           +   ++    +VL  I V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LS
Sbjct: 151 TADPQQSISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDLARSVGSLS 210

Query: 218 LVLRSIADLNPSSSEDSDVWDVQE 241
           LVLR+  D  P  +  +    +  
Sbjct: 211 LVLRNQIDDRPLPTGGATKITLLG 234


>gi|82703478|ref|YP_413044.1| Flp pilus assembly CpaB [Nitrosospira multiformis ATCC 25196]
 gi|82411543|gb|ABB75652.1| Flp pilus assembly CpaB [Nitrosospira multiformis ATCC 25196]
          Length = 261

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 119/235 (50%), Gaps = 18/235 (7%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            IV+S +  L A ++A R +          I         V+++  D+ VG  +TP++L+
Sbjct: 1   MIVISLLLGLAAVVVAGRWI----------IDRASVDAATVIVASRDIDVGTRLTPDMLQ 50

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126
              +P   V +G   D    +        +V+V +++G+P+   KL  +G  GGLS ++ 
Sbjct: 51  PSDWPRATVPEGSFQDAKLLDT------RVVKVNLVRGEPLLEAKLAPQGAAGGLSGVIA 104

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186
           +GKRA T+ ++    + G   P ++VD+++       KP   +VL  I V+A+  ++  D
Sbjct: 105 EGKRAITVKVNEIVGLAGFALPGNNVDILVNAKDENDKPISKIVLERILVLAVGQDLGRD 164

Query: 187 E-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
           E +    +  TLE+TP +A+ L  A+S+  LSLVLR+  D +P ++      D+ 
Sbjct: 165 ETKPKAVTAVTLEVTPQEAEKLDLARSIGTLSLVLRNQIDKSPGTTAGVRTRDLL 219


>gi|114705457|ref|ZP_01438365.1| pilus assembly protein cpaB [Fulvimarina pelagi HTCC2506]
 gi|114540242|gb|EAU43362.1| pilus assembly protein cpaB [Fulvimarina pelagi HTCC2506]
          Length = 282

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/267 (35%), Positives = 152/267 (56%), Gaps = 14/267 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQT---EEVITENPAKFINVLISKGDLAV 57
           M  ++++ + V+ + A+ AG++A+++ +P   +         + P K  +VLIS GD+ +
Sbjct: 10  MNRSQIIVVGVAALAAIGAGLLALKVSTPSQQEPVIITAAPAQPPVKLEDVLISSGDVPM 69

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           GM    N L W  +P + + +GFI    +P A+ EL+G + R     G+P+R  KL+   
Sbjct: 70  GMRF-DNGLSWQKWPVDGIGEGFILKNDRPEAIDELNGSIARQAFFAGEPVRSSKLIQSD 128

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVLS 172
           +G +S+LLP GKRA  + I+ ++A GG I PNDHVDV+M R +              VL 
Sbjct: 129 SGFMSALLPAGKRAVAVQIAAATAAGGFILPNDHVDVIMTRRVEGDGGANAKILTETVLR 188

Query: 173 NIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPS 229
           N+RV+AID  I+    +R +VGS ATLE+   QA+AL AAQ +A +  L LRS+AD  P 
Sbjct: 189 NLRVLAIDQTIEDAEGQRNVVGSVATLEVDGEQAEALTAAQQIADRFVLSLRSLADSIPG 248

Query: 230 SSEDSDVWDVQEEGKE--IQIIKAGVI 254
           S   +     +E+ +   ++I++ G +
Sbjct: 249 SPGYAAFLLAEEKARRGPVRIVRYGKV 275


>gi|84386798|ref|ZP_00989823.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01]
 gi|84378326|gb|EAP95184.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01]
          Length = 293

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 25/271 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RLM + +   F  V GI  + L   ++        +   + + VL+    + +G  
Sbjct: 1   MTAKRLMLLSL---FCSVLGISVLLLSQTNNESASTSSKQAVKQTVKVLVPTRTIEIGQA 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
            TPN   W   P++ + +       +  +       L R  ++K   +    + +   G 
Sbjct: 58  YTPNSFRWKEVPQQELENYIDHVTPEDISADHTMSGLARTKLVKDSILSKADITEPEGGY 117

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVV 170
            LS  L  G RA ++ +   ++  G I+P D VD++++ S            +   VT +
Sbjct: 118 SLSLKLQPGYRAISVPVDQVTSNSGFIEPGDRVDILLLGSQDGELLRYGNSSQGLYVTTI 177

Query: 171 LSNIRVIAID--HNIDSDERVLVG----------STATLELTPMQAKALVAAQSVAKLSL 218
           + + RV+A +     +S ++              S+ +LE+TP QA  +V A+ + KL+L
Sbjct: 178 VHDARVLAFNDKQTAESYQKARESNQHKKVVPDDSSVSLEVTPEQANQVVLAKQLGKLTL 237

Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEIQII 249
           VLR   +        + V          Q++
Sbjct: 238 VLRGQNEAQDQPQHANAVTLKVISPDTTQVL 268


>gi|154250688|ref|YP_001411512.1| SAF domain-containing protein [Parvibaculum lavamentivorans DS-1]
 gi|154154638|gb|ABS61855.1| SAF domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 250

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 82/255 (32%), Positives = 136/255 (53%), Gaps = 16/255 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R+  +V++ V A +A ++A  LVS +    E+ + E       VL++  +L +G  
Sbjct: 1   MNPVRIGVLVLALVAAGLAALLARGLVSGNDEPVEQKVVEA--PTTEVLVASSNLQLGQR 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    L W  +P+ ++   +I     P A++E  G + R  +L G+P+  EKLV     G
Sbjct: 59  IGGGDLRWQRWPDTSLNGAYITRNQSPAALEEYTGSVARASLLSGEPVTSEKLVTLTGAG 118

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            +S+L+  G RA  + I+  ++ GG I PND VD+V +            +L NIRV+AI
Sbjct: 119 FMSALIEPGMRATAISITPETSAGGFILPNDRVDIVDLAKG-------QTILRNIRVLAI 171

Query: 180 DHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           D   D    E+V VG TATLELTP Q + +  A++  ++ L LRS+A+ + + SE +   
Sbjct: 172 DQRFDEKAGEQVAVGRTATLELTPAQVEVVSVAEAEGRIGLSLRSMAEQDLAGSEKT--- 228

Query: 238 DVQEEGKEIQIIKAG 252
            V E G  +++++ G
Sbjct: 229 -VAEGGSVVKVVRYG 242


>gi|254466356|ref|ZP_05079767.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium Y4I]
 gi|206687264|gb|EDZ47746.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium Y4I]
          Length = 285

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 106/252 (42%), Gaps = 9/252 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A ++A   +S +      E          ++V ++   L  G
Sbjct: 1   MRAVFGLVLIVGVALAGGAVMMAKNYISAYQNELARERAARAETVPTVDVFVATKPLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDR- 116
             ++ + +  V +PE  + +G    +      Q  D   +V   + K + +   K+    
Sbjct: 61  ERLSQDAVRAVRWPENAIPEGAYTTLDALFPPQSGDKLRVVLRAMEKDEAVMAVKVTAPG 120

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLS 172
            + G++S L +G RA  + + +SS V G ++P D VDV        +   R     ++ +
Sbjct: 121 EDAGITSRLQRGMRAFAIKVDVSSGVSGFLRPGDKVDVYWTGMMPGAGGSRGEVTRLIET 180

Query: 173 NIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           N+ ++A+D +   D    ++  T T+   P Q  AL  AQ+  +LSL L    D   +S 
Sbjct: 181 NVELVAVDQSAGGDINEAIIARTVTVAAKPAQVAALAQAQTTGRLSLALVGAGDDTIASV 240

Query: 232 EDSDVWDVQEEG 243
            + D   +   G
Sbjct: 241 VEVDQRTLLGLG 252


>gi|149912018|ref|ZP_01900612.1| Flp pilus assembly protein CpaB [Moritella sp. PE36]
 gi|149804917|gb|EDM64951.1| Flp pilus assembly protein CpaB [Moritella sp. PE36]
          Length = 288

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 27/269 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RL+ + V      +     + L             ++  K   VL+S  D+ +G  
Sbjct: 1   MNAKRLVYLSVCMSLLGL-----IWLFFSLSAPVNSTPKQDTVKTYEVLVSTQDVVIGRP 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
            + ++  W    E +V D          ++Q L   +     + G  +     +    GG
Sbjct: 56  YSASLFAWKTVDESSVRDRIDFIDKANFSIQALKNTVAAADFVTGQILSPSDFLKPEQGG 115

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVV 170
            LS +L    RA ++ +   +A  G+I P DHVDV++          R    +   V  +
Sbjct: 116 FLSVMLRPNYRAVSIPVDEVTANSGLIGPGDHVDVLLLASKSQELRSRGNETQSLYVKTI 175

Query: 171 LSNIRVIAIDHNID-----SDERVLVG-----STATLELTPMQAKALVAAQSVAKLSLVL 220
             N+RV+A +  +        ++   G     ST TLE++P+QA  +  A  +  LS+VL
Sbjct: 176 AQNVRVLAFNDALQLARYMEKQKHNKGVIPDNSTVTLEVSPLQANQITLANQLGTLSMVL 235

Query: 221 R--SIADLNPSSSEDSDVWDVQEEGKEIQ 247
           R  +  + + +     +V D+    K++Q
Sbjct: 236 RSKNSQETDSAVIPAVNVDDILPAIKQVQ 264


>gi|307726374|ref|YP_003909587.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
 gi|307586899|gb|ADN60296.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
          Length = 278

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 14/204 (6%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
             V +   ++++G  +  N++  V +P  +V  G   D       + LDG +VR  +  G
Sbjct: 37  TPVAVVTAEVSLGQPLNANMIRTVNWPTASVPPGAFKDP------KALDGRVVRTSLEPG 90

Query: 106 DPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VR 158
           +P+   KL  +   GGLS+++ +GKRA T+ ++    V G   P ++VDV++       +
Sbjct: 91  EPVIESKLAPQGTKGGLSAVIGEGKRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPEAK 150

Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLS 217
           +   +     +VL  I V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LS
Sbjct: 151 TADPQHSISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDLARSVGSLS 210

Query: 218 LVLRSIADLNPSSSEDSDVWDVQE 241
           LVLR+  D  P  +  +    +  
Sbjct: 211 LVLRNQIDDRPLPTGGATKITLLG 234


>gi|149176582|ref|ZP_01855195.1| Flp pilus assembly CpaB [Planctomyces maris DSM 8797]
 gi|148844695|gb|EDL59045.1| Flp pilus assembly CpaB [Planctomyces maris DSM 8797]
          Length = 349

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 114/261 (43%), Gaps = 24/261 (9%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M +V++    LVA +   ++++    Q E        K  NVL++  ++  G  +  + +
Sbjct: 1   MMLVIAVGCGLVAMLGVRQVLNKDDQQAE-------VKTANVLMTIAEIPPGTPLNESNV 53

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           ++ ++P + V +G +        +++     ++   + G+ +   KL ++G  G S  +P
Sbjct: 54  KFKSWPIDQVPEGAVTK------LEQYKDRSIKTRAVPGEIVMKAKLSEQGVRGASVEIP 107

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNIRVIAIDHN 182
            GKR  T  + ++    G+I P D VDV +                V+L  +++ A DH 
Sbjct: 108 DGKRVFTTSVDMTKTHSGLILPGDFVDVYVTFTARKPEGGMSTITKVILERVKIFATDHL 167

Query: 183 ID---SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
            D   ++   +     +L L+P +   L  A+   ++ L LR+ +D    S++  DV   
Sbjct: 168 TDVGGTESNQVKSKNISLLLSPREGAMLKLAEKKGEVHLALRAQSD----STDSEDVQFD 223

Query: 240 QEEGKEIQIIKAGVIVNKDGE 260
            +E  E+  I+    +    E
Sbjct: 224 DDELAEVFSIEGSEYLKDGEE 244


>gi|114764945|ref|ZP_01444118.1| CpaB family protein [Pelagibaca bermudensis HTCC2601]
 gi|114542657|gb|EAU45681.1| CpaB family protein [Roseovarius sp. HTCC2601]
          Length = 286

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 115/271 (42%), Gaps = 13/271 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVG 58
           M+L   + ++     A  A  +A +    +    +E   +         + +    +A G
Sbjct: 1   MRLVFGLVLLAGLALAGFAVHLAQKQFGAYQNALQEERQKAVEAVPTGRIYVMTRPIARG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
            ++TP+ ++   +P E + +G   +        +    +V   + K D +   ++ + G 
Sbjct: 61  EILTPDAVKLAPWPMEIMPEGIFTEKRPLFVEGD-APRVVVNAMDKFDAVLDGRVSEPGG 119

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------KPTVTVVL 171
           + GL+S L +G+RA  + + +++ V G ++P D VDV     +              ++ 
Sbjct: 120 DAGLTSRLERGERAFAIKVDVATGVSGFLRPGDRVDVYWTGRVPGNDPNLPQGDVTKLIE 179

Query: 172 SNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           + IR+IA+D   +S+      +  T T+ +TP Q   L  AQS  +LSL L +  D   +
Sbjct: 180 TGIRLIAVDQTAESETANPTTIARTVTVAITPQQVAGLAQAQSTGRLSLSLMAANDETVA 239

Query: 230 SSEDSDVWDVQE-EGKEIQIIKAGVIVNKDG 259
            + + D   +     +E Q+ K  + V    
Sbjct: 240 DAIEVDQRALLGLTKREQQVEKKSIQVCTTR 270


>gi|91788410|ref|YP_549362.1| Flp pilus assembly CpaB [Polaromonas sp. JS666]
 gi|91697635|gb|ABE44464.1| Flp pilus assembly CpaB [Polaromonas sp. JS666]
          Length = 284

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 25/249 (10%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
               L+ I V+ V A  A I+A R +S           +  A    V ++  D+++G  +
Sbjct: 3   NTRALVMIAVAVVLAFGAVIVAARWIS----------AQASADTSKVAVAAVDISLGARL 52

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120
           +P ++  V +P   +  G I D       ++L+  + R  I +G+P+   KL      GG
Sbjct: 53  SPEMVRMVDWPASAMPPGAITD------AKQLETRVTRTSIQRGEPVMEGKLAPPGTQGG 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-------KPTVTVVLSN 173
           LS+++ +GKRA T+ ++    V G   P + VD+++              +    +VL  
Sbjct: 107 LSAVVAEGKRAMTVRVNDVVGVAGFALPGNFVDILVNTQDEPGKGGAGKDQTISKIVLER 166

Query: 174 IRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           I V+AI      DE +  V +  TLELTP QA+ L  A+SV  LSLVLR+  D NP +++
Sbjct: 167 ILVLAIAQESSRDETKPKVVNAVTLELTPDQAEKLDLARSVGTLSLVLRNQVDPNPVNTK 226

Query: 233 DSDVWDVQE 241
            +    + +
Sbjct: 227 GATKTTLLD 235


>gi|116620531|ref|YP_822687.1| SAF domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223693|gb|ABJ82402.1| SAF domain [Candidatus Solibacter usitatus Ellin6076]
          Length = 299

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 107/251 (42%), Gaps = 19/251 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    +  +  + + A  A ++  R++           T      + V ++  +L VG +
Sbjct: 1   MNKRFVGVLTFAFLVAAGASLVLYRVLINRPQA-----TNAAPTMVQVALATRNLEVGTL 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119
           +  + ++   +P   V  G    V      +++ G  V   I   +PI   +L  +G  G
Sbjct: 56  LKEDDVKLSDWP-GAVPIGATAQV------KDVLGRGVTTAIFAKEPIIESRLAPKGAGG 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIR 175
           GL++++P G RA  + ++    V G + P  HVD+++  +              +L NI 
Sbjct: 109 GLAAMIPSGMRAVAVRVNEVVGVAGFVVPGMHVDILISGNTPGGDGNLGTLTKTLLQNIE 168

Query: 176 VIAIDHN--IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           V++   +   D++ + ++     L +TP QA+ L  A +   + L+LR+  D   S +  
Sbjct: 169 VLSAGQDFKKDNEGKPIMVQVVNLLVTPEQAEQLSLASNQTTIQLILRNPLDHEISKTSG 228

Query: 234 SDVWDVQEEGK 244
           + +  +   G+
Sbjct: 229 TALRSLFTGGR 239


>gi|253996770|ref|YP_003048834.1| Flp pilus assembly protein CpaB [Methylotenera mobilis JLW8]
 gi|253983449|gb|ACT48307.1| Flp pilus assembly protein CpaB [Methylotenera mobilis JLW8]
          Length = 298

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 23/252 (9%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
                + IVVS    L A ++A R +S                   V+++  ++ +G  +
Sbjct: 3   NPRAFLMIVVSVGIGLGAVVLASRWISQQ---------AATVASSKVVVAAINIDLGTPL 53

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGG 120
           TP +L+   +P  +V  G  DD+   +A       +V+  +L+G+P+   KL      GG
Sbjct: 54  TPQMLKVADWPRGSVPVGATDDIKTLDA------RVVKTSLLQGEPVLESKLAPLGATGG 107

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVLSNI 174
           LS+++ +G RA T+ ++    V G   P ++VD+V+             K    +VL +I
Sbjct: 108 LSAVIAEGNRAMTVRVNDVVGVAGFALPGNYVDIVVNTEDESVKAENVNKSISKIVLEHI 167

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+    + DE +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D N  ++E 
Sbjct: 168 MVLAVAQEQNRDETKPKVVNAVTLEVTPAQAEKLDLARSVGTLSLVLRNQIDKNVVTTEG 227

Query: 234 SDVWDVQEEGKE 245
           S   ++     E
Sbjct: 228 STKKNLLNRVDE 239


>gi|264678239|ref|YP_003278146.1| pilus assembly transmembrane protein [Comamonas testosteroni CNB-2]
 gi|262208752|gb|ACY32850.1| pilus assembly transmembrane protein [Comamonas testosteroni CNB-2]
          Length = 281

 Score =  145 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 14/206 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++  D+ +G  + PN+L  V +P  ++ DG   D      MQ+L   +V+V +L+G+
Sbjct: 38  KVVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGE 91

Query: 107 PIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------RS 159
            +   KL      GGL++++  GKRA T+ ++    V G   P ++VDVV+         
Sbjct: 92  AVLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQNGK 151

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
             E +     VL N+ V+A+    D DE +  V S  TLEL+P  A+ L  A+SV  LSL
Sbjct: 152 TEESRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPEDAEKLDLARSVGNLSL 211

Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGK 244
           VLR+  D +P+S+       +    +
Sbjct: 212 VLRNQIDKDPTSTAGITKHQLFGTPE 237


>gi|114799072|ref|YP_761692.1| pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444]
 gi|114739246|gb|ABI77371.1| pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444]
          Length = 281

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 14/241 (5%)

Query: 25  RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84
           ++V+    +   +I +     I VL +  DL +G  +    L+W  +PE  V +G   + 
Sbjct: 30  QVVTETVTRDNNIIEKEQVSEIKVLTASRDLTIGEQIKAEDLQWSIWPELGVAEGQYTET 89

Query: 85  HQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL-PKGKRAATMDISISSAVG 143
             P A++EL G +V++PI K +PI  +++V RG  GL  +L  +  RA ++ IS  SA G
Sbjct: 90  AAPGAVEELTGAVVKMPIYKLEPIMPQRVVKRGEAGLLPVLMGEDMRAVSIGISPESASG 149

Query: 144 GMIKPNDHVDVVMVRSLSER--------KPTVTVVLSNIRVIAIDHNI---DSDERVLVG 192
           G I PND VD+++    +          +     VL N+RV+AID      + +E   +G
Sbjct: 150 GFILPNDRVDLILTYEQTPSATNGLTSARTVSMTVLQNVRVLAIDQTYAPGEPEESTRIG 209

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ--EEGKEIQIIK 250
            TATLE+ P +A+ +  +QS  +LSL LR + DL  SS     +      E    + II+
Sbjct: 210 QTATLEVLPSEAELVALSQSKGQLSLALRPLNDLAVSSPRKPRLELNGGDEGEGAVMIIR 269

Query: 251 A 251
            
Sbjct: 270 N 270


>gi|299532591|ref|ZP_07045980.1| pilus assembly transmembrane protein [Comamonas testosteroni S44]
 gi|298719394|gb|EFI60362.1| pilus assembly transmembrane protein [Comamonas testosteroni S44]
          Length = 281

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 65/208 (31%), Positives = 107/208 (51%), Gaps = 14/208 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++  D+ +G  + PN+L  V +P  ++ DG   D      MQ+L   +V+V +L+G+
Sbjct: 38  KVVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGE 91

Query: 107 PIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------RS 159
            +   KL      GGL++++  GKRA T+ ++    V G   P ++VDVV+         
Sbjct: 92  AVLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQNGK 151

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
             E +     VL N+ V+A+    D DE +  V S  TLEL+P  A+ L  A+SV  LSL
Sbjct: 152 TEESRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPEDAEKLDLARSVGNLSL 211

Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEI 246
           VLR+  D +P+S+       +    + +
Sbjct: 212 VLRNQIDKDPTSTAGITKHQLFGTPEPV 239


>gi|319779650|ref|YP_004130563.1| SAF domain protein [Taylorella equigenitalis MCE9]
 gi|317109674|gb|ADU92420.1| SAF domain protein [Taylorella equigenitalis MCE9]
          Length = 325

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 101/262 (38%), Gaps = 11/262 (4%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
                    +    ++A   A + +     Q E    +     I   ++ GD+  G ++ 
Sbjct: 5   RKSWYIAGFAIGAGILATFSANKYMKEKISQIEANHRQVMIPRI---VAAGDIPEGTIID 61

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            +IL     PE  V    +     P+  + ++G ++  P+  GDP+             S
Sbjct: 62  SSILAVRDIPENWVSSDSLS----PDEFERIEGKIITSPLTAGDPVLWAHTSTVSRRPFS 117

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
             +  G+RA TM +   ++V G+I P D +D+ +      R      +L  + V+A D  
Sbjct: 118 EKVAVGRRAVTMPVDTINSVSGLIVPGDLIDLYVSFKYRNRD-ITAPLLQGVLVLATDKE 176

Query: 183 ID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED-SDVWDV 239
               +D      ST TL+ +P +A  LVAA+    ++  LR+  D   S      D+  +
Sbjct: 177 SKLTNDGSEREFSTVTLDTSPEEAAKLVAARQDGVITAFLRNPDDKKASQKGVKGDLASI 236

Query: 240 QEEGKEIQIIKAGVIVNKDGEG 261
                   I++    V    +G
Sbjct: 237 LGIATSGPIVRKKASVIYGDQG 258


>gi|254441777|ref|ZP_05055270.1| Flp pilus assembly protein CpaB [Octadecabacter antarcticus 307]
 gi|198251855|gb|EDY76170.1| Flp pilus assembly protein CpaB [Octadecabacter antarcticus 307]
          Length = 286

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 103/251 (41%), Gaps = 10/251 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58
           M+    + + V    A  A  +    +   +   + +    E     ++V      +  G
Sbjct: 1   MRAVFGLVLFVGMGLAGFAIYMVQGYLQEQNANLERQRAAMELAVPTVHVYAVNRVMEHG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +T   +  + + E  + +G      +  +    +  +V   +   +PI   K+   G 
Sbjct: 61  EQITMQDIIMIRYAEPYLPEGVFRTAEELFSAGPDELRVVIRQMEPNEPILATKVTAPGE 120

Query: 119 -GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVL 171
            GG+++LL +G RA T+++ +SS V G + P D VDV     ++             ++ 
Sbjct: 121 VGGITALLARGMRAFTIEVDVSSGVSGFLNPGDRVDVYWTGRVNGIDGANTNGEFTKLIQ 180

Query: 172 SNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           + I ++AID   +S      +  T T+++TP Q  AL  AQ+   LSL L    D   +S
Sbjct: 181 AGIELVAIDQTSESGRIGASIARTVTVQVTPDQVAALAQAQATGNLSLSLVGREDDTVAS 240

Query: 231 SEDSDVWDVQE 241
           S + +   +  
Sbjct: 241 SVEVNQASLLG 251


>gi|78186538|ref|YP_374581.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273]
 gi|78166440|gb|ABB23538.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273]
          Length = 262

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 114/243 (46%), Gaps = 19/243 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + + +   ++ +   +A   A R V+                   V+I    + +G  +T
Sbjct: 1   MKKPIIAAIALILGAMAAFTAARWVNVAQHTGP-----------KVVIVALPIELGKAIT 49

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121
              ++ V +P  +   G   +        ++   + RV ++ G+P+   KL  +G  GGL
Sbjct: 50  AEQIKAVNWPGTDAPQGAYANTA------DVVSRIARVSMMPGEPVLPGKLAPKGATGGL 103

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           +S++P GKRA T+ ++   AV G   P  +VDV++    +  +P    VL+ ++V+AI  
Sbjct: 104 ASIIPDGKRAITVKVNEVIAVAGFALPGSYVDVLVSGKDASHQPFARTVLNRVKVLAIAQ 163

Query: 182 NIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
              ++ ++  V +  TLELTP +++ L  A+S+  LSLVLR+  D    +S    + D+ 
Sbjct: 164 ETTAEPDKPKVVNAVTLELTPHESEKLDLARSIGSLSLVLRNELDTGEENSAGVRMSDLM 223

Query: 241 EEG 243
              
Sbjct: 224 YAQ 226


>gi|294012240|ref|YP_003545700.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
 gi|292675570|dbj|BAI97088.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
          Length = 295

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 14/235 (5%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
             L A  +A   +S       E +         V+++   L  G  VT   +  V +P  
Sbjct: 2   LGLAAVFVANSYLSR-----AEKVPPPEGGMAKVVVATVSLPFGSAVTAEKIRVVDWPAN 56

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAAT 133
           +V  G   D  Q  ++    G +V   I  G+PI   KL   G    +S++L    RA  
Sbjct: 57  SVPPGAFRDPIQLTSLG--KGRVVLRQIEPGEPILASKLSGEGGRATMSAVLAPEMRAVA 114

Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIRVIAIDHNI-DSDE 187
           + +S  +A GG + P D VDV + R+L +      +    V+L   RVIAID N  D+ +
Sbjct: 115 VRVSDVAAAGGFVLPGDTVDVFVTRTLQDPMGGASQQITDVLLQGTRVIAIDQNANDTSK 174

Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
              VG TATLE+  + A+ LV AQ V +L+LVLR++ D    + +   + D+++ 
Sbjct: 175 DPAVGKTATLEVNQVDAQKLVLAQQVGQLTLVLRNLTDKPNPAVQTVGIEDLRDG 229


>gi|327189766|gb|EGE56910.1| putative cpaB pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 304

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 102/248 (41%), Gaps = 8/248 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ + ++ +V++ V A  A       +S    +   +      +   V ++   +  G  
Sbjct: 1   MRSSTILSLVIAFVLAAAAVFGMREYLSDQKARLLAMNGMKAEERTLV-VAAKPMRFGDR 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +    L+ + +P      G    +       +         I  G+P+   K+   G   
Sbjct: 60  IRSENLKAIPWPSNETPAGSFVSIETVVGNDD-QPRYAMAAIDPGEPVLSSKITGAGERA 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175
            LS+ L +G +A ++ ++    V G ++P+D VDV++           +  V V+L  ++
Sbjct: 119 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRGPEGNDQTFVDVLLQGVK 178

Query: 176 VIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+A+D   D   +   V  T T E+T  +A+ L    S+  LSL LR++A  +   +   
Sbjct: 179 VLAVDQTADERKDEPSVVKTVTFEVTTDEAQRLTLGSSIGTLSLALRNVASSSIEQTRPI 238

Query: 235 DVWDVQEE 242
            V D+   
Sbjct: 239 TVADLGGG 246


>gi|73542328|ref|YP_296848.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134]
 gi|72119741|gb|AAZ62004.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134]
          Length = 280

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 22/241 (9%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
            + A + A R +      + +           V+++  DL +G  +  + L  V +P  +
Sbjct: 17  GVAAVVSASRWLMEQSSNSVK----------QVVVAANDLNLGQPLNGSQLRLVNWPTAS 66

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATM 134
           V  G  +D      ++ L+G +VR  + +G+P+   KL      GGLS+++  GKRA T+
Sbjct: 67  VPPGAFED------LKLLEGRVVRTSLQRGEPVLDAKLAPIGTKGGLSAVINDGKRAITV 120

Query: 135 DISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNIRVIAIDHNIDSDE-RV 189
            ++    V G   P ++VDV++  +      +      +VL  I V+A+   +  D+ + 
Sbjct: 121 RVNDVVGVAGFALPGNYVDVIVNTNEEAKTAQNGSISKIVLEKILVLAVAQQVSRDDTQP 180

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQII 249
            V +  TLE+TP QA+ L  A+SV  LSLVLR+  D+   ++  +    +  +  E   +
Sbjct: 181 KVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQMDVADINTGGATKGTLLGKAPEAPQV 240

Query: 250 K 250
           K
Sbjct: 241 K 241


>gi|78186672|ref|YP_374715.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273]
 gi|78166574|gb|ABB23672.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273]
          Length = 266

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 116/240 (48%), Gaps = 15/240 (6%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
            ++     +A  I  R +     ++E            V+I+   +  G  +  N L+ V
Sbjct: 8   AIALTLGAMAAFITARWMGVVQSRSE-------VSGPTVVIAARAIDAGTAIAENQLKAV 60

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKG 128
            +P   V +G            ++ G + RV ++ G+P+   KL     +GGLSS++P G
Sbjct: 61  QWPRSTVPEGASARTD------DVAGRIARVSMIAGEPVLPGKLAPTNASGGLSSIIPDG 114

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-E 187
           KRA T+ ++   AV G   P  +VD+++    +ER+P    VLS I+V+A+     ++ +
Sbjct: 115 KRAITVKVNEVIAVAGFALPGSYVDILVSGRDAERQPFSRTVLSRIKVLAVAQETTAEPD 174

Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           +  V +  TLELTP +++ L  A+S+  LSLVLR+  D    +S    + D+ +     +
Sbjct: 175 KPKVVNAVTLELTPHESETLDLARSIGVLSLVLRNELDTGEINSAGVRLADIIQAQSAGR 234


>gi|260462608|ref|ZP_05810814.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
 gi|259031514|gb|EEW32784.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
          Length = 351

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 113/254 (44%), Gaps = 12/254 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ IV++GVF ++A ++A   ++       +    N  +   V+++   L  G +
Sbjct: 1   MRANTIIMIVLAGVFGVLAVVLANIWLANQRGAIAQT---NEVQRDTVVVAAVALKFGDI 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG---VLVRVPILKGDPIRLEKLVDRG 117
           ++ + L  VA+P   V  G      +        G         I   +P+   K+   G
Sbjct: 58  LSADKLREVAWPAGAVPAGAFKTTEELLTKDLPVGGGTKQALQSIGVNEPVLATKITGPG 117

Query: 118 N-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----PTVTVVLS 172
               LS++L +G +A ++ ++    V G + P D VD+++ R++ +        V V+L 
Sbjct: 118 QRATLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDILLTRTVRDDDGTDKSFVDVLLQ 177

Query: 173 NIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +++V+A+D   D   +   V  + TLE +   A+ L  A    +LSL LR  A     ++
Sbjct: 178 SMKVLAVDQVADESKDSPTVVKSVTLEASTKDAQKLTLAAGAGQLSLALRQAAASKGETT 237

Query: 232 EDSDVWDVQEEGKE 245
           E   + D+  E   
Sbjct: 238 ERITLSDLTGETPA 251


>gi|329900777|ref|ZP_08272581.1| SAF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327549366|gb|EGF33934.1| SAF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 323

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 11/241 (4%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
              + + V+    + A ++A   +S    Q   +        I V+++KGDL  G V++ 
Sbjct: 13  KTWLVLGVALTIGVGAALLARSFLSD---QIASIEARGKGPTIPVVVAKGDLNKGTVLSA 69

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           + +     P E      +     P+    +DG  +   +  G+ +    +  +     S+
Sbjct: 70  DNVAVRQIPREFAHSASV----FPDQFARIDGQPIAYGLKSGESVMWGLMEGKKVPTFSA 125

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI 183
            L  G RA T+ +   +++ G+++P D +D+++       K     +L  ++V+A     
Sbjct: 126 RLEAGHRAMTVPVDEINSISGLLEPGDSIDLIVTVDH-GGKKITFPLLQAVQVMATGQRA 184

Query: 184 DSD---ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
             D         ST TL  TP QA+ ++ A+   K++ +LR+ AD  P +    D+  + 
Sbjct: 185 VDDPRTGERRQFSTVTLNTTPEQAQNVIVAREAGKITALLRNPADQAPMAGTRGDLAALL 244

Query: 241 E 241
            
Sbjct: 245 G 245


>gi|84516632|ref|ZP_01003991.1| CpaB family protein [Loktanella vestfoldensis SKA53]
 gi|84509668|gb|EAQ06126.1| CpaB family protein [Loktanella vestfoldensis SKA53]
          Length = 277

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 106/249 (42%), Gaps = 7/249 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58
           M+    + ++V    A  A  +  + ++    Q      I       ++V ++   +  G
Sbjct: 1   MRAVFGLVLLVGMGLAGFAVYMVNQYMATQTAQLDRARQIAAQALVTVDVYVTTRSVTYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
             +T + +  V +P + + +G                 +V +P++  + +   K+ + G 
Sbjct: 61  EYLTADDVRLVPYPRDYLPEGTFATEQSLFPQGTQTPRVVVLPMIANELVLTTKVSEPGA 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
           + GL++L+  G RA  ++  +++   G+++P+D +DV     L + +    ++ S +++I
Sbjct: 121 SRGLTALVEPGFRAFPVEGRVAAGF-GILRPDDRIDVYWTGRLRDGREVTNLIKSGLQII 179

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           A+   +          +  +++TP +   L  AQ+  +L+L L    DL+ +     D  
Sbjct: 180 AV---LGDAGNRGGPQSVVVQVTPEEVALLTQAQNSGQLTLALVGTGDLSETGPVTIDNS 236

Query: 238 DVQEEGKEI 246
            +  E   +
Sbjct: 237 ALTGEQDIV 245


>gi|294676058|ref|YP_003576673.1| Flp pilus assembly protein CpaB [Rhodobacter capsulatus SB 1003]
 gi|294474878|gb|ADE84266.1| Flp pilus assembly protein CpaB [Rhodobacter capsulatus SB 1003]
          Length = 291

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 113/265 (42%), Gaps = 20/265 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVG 58
           M++   + +V+    A +A  +A + +S   V+ + ++ E     + ++V++ +  LA G
Sbjct: 1   MRMIVALVLVLGVALAGLAVYMAQQQISQFQVERDRLVAEQRNAPQLVDVVVLRRPLAYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQP------------NAMQELDGVLVRVPILKGD 106
              T   L  +     ++  G    V  P                E             +
Sbjct: 61  ERFTAADLGVIKMQVGHLPAGIFHSVATPQGAPEEAQAASVFPGGETRPRAALRAYDAYE 120

Query: 107 PIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
            I   K+   G + G+++ L    RA T+ +  ++ V G ++P D VDV     ++  + 
Sbjct: 121 AILANKITAPGVDAGITASLSPNMRAFTISVDATTGVSGFLRPGDRVDVYWSGEVNGER- 179

Query: 166 TVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
              ++ +N+R+IAID + D+D  E   +  T T E+TP Q  +L  AQ   +L+L L  +
Sbjct: 180 VTKLIDTNLRLIAIDQSADADRAEETQLAKTVTAEVTPEQVASLTLAQGTGELTLSLVGM 239

Query: 224 ADLNPSSSEDSDVWDVQEEGKEIQI 248
              N +     ++   +  G ++Q 
Sbjct: 240 --QNTADPGAIEIDRNKLLGIQVQE 262


>gi|254461000|ref|ZP_05074416.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium
           HTCC2083]
 gi|206677589|gb|EDZ42076.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 286

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 100/256 (39%), Gaps = 10/256 (3%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINV--LISKGDLAVGMV 60
           +   + +++    A VA  +  + V+ H     E           V   ++   L+ G  
Sbjct: 1   MIFGVVLLIGIALAGVAVHMTQKYVNQHKAALLEAQANKTPVVPTVPVFVANRKLSYGDE 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +    +    +P   +  G      +   + +     V     K + I   K+ + G   
Sbjct: 61  IKLKDIAVAQWPSNALPKGIFQSKEELFPIDQAGARYVMRATEKFEAILAVKITEPGKSV 120

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVLSN 173
           GL S L  G+ A T+ +  +S V G ++P ++VDV     +              ++ S 
Sbjct: 121 GLQSRLEPGQSAFTIKVDSTSGVSGFLRPGNNVDVYWTGKVQANGEQRKSRTVTRLIESA 180

Query: 174 IRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           +R+IAID + + + ++  +  T T+ +T +Q  +L  AQS  +L+L L    D   +   
Sbjct: 181 VRIIAIDQSANEEVKKASIARTVTVAVTQLQGASLTQAQSTGRLNLSLVGERDETIAELI 240

Query: 233 DSDVWDVQEEGKEIQI 248
           + D   +    +   +
Sbjct: 241 EVDQKQLLGIEEAQPV 256


>gi|167924331|ref|ZP_02511422.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           BCC215]
          Length = 281

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  + +    V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +
Sbjct: 29  VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82

Query: 98  VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           VR  + +G+P+   KL      GGLS+++  G RA T+ ++    V G   P ++VDV++
Sbjct: 83  VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142

Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211
                     ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+
Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202

Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235
           SV  LSLVLR+  D +  S+  + 
Sbjct: 203 SVGTLSLVLRNQIDKDALSTGGAT 226


>gi|209546484|ref|YP_002278402.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537728|gb|ACI57662.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 305

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 102/248 (41%), Gaps = 8/248 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ + ++ +V++ V A  A       +S    +   +      +   + ++   +  G  
Sbjct: 1   MRSSTILSLVIAFVLAAAAVFGMREYLSDQKARLLAMNGVKAEERTLI-VAAKPMRFGDR 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + P  L  + +P      G    +       +         I  G+P+   K+   G   
Sbjct: 60  IRPENLRAIPWPSNETPAGSFVSIETVVG-SDAQPRYAMAAIDPGEPVLSSKITGAGERA 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175
            LS+ L +G +A ++ ++    V G ++P+D VDV++           +  V V+L  ++
Sbjct: 119 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRGPAGNDQTFVDVLLQGVK 178

Query: 176 VIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+A+D   D   +   V  T T E+T  +A+ L    S+  LSL LR+IA  +   +   
Sbjct: 179 VLAVDQTADERKDEPSVVKTVTFEVTTDEAQRLTLGSSIGTLSLALRNIASASVEQTRPI 238

Query: 235 DVWDVQEE 242
            V D+   
Sbjct: 239 TVADLGGG 246


>gi|221067359|ref|ZP_03543464.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1]
 gi|220712382|gb|EED67750.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1]
          Length = 281

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 14/208 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++  D+ +G  + PN+L  V +P  ++ DG   D      MQ+L   +V+V +L+G+
Sbjct: 38  KVVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGE 91

Query: 107 PIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRS 159
            +   KL      GGL++++  GKRA T+ ++    V G   P ++VDVV+         
Sbjct: 92  AVLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQAGK 151

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
           + + +     VL N+ V+A+    D DE +  V S  TLEL+P  A+ L  A+SV  LSL
Sbjct: 152 MEDSRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPGDAEKLDLARSVGNLSL 211

Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEI 246
           VLR+  D +P+S+       +    + +
Sbjct: 212 VLRNQIDKDPTSTVGITKHQLFGTPEPV 239


>gi|53723206|ref|YP_112191.1| pilus assembly-related, exported protein [Burkholderia pseudomallei
           K96243]
 gi|76817358|ref|YP_336468.1| pilus assembly transmembrane protein [Burkholderia pseudomallei
           1710b]
 gi|126444606|ref|YP_001064075.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
 gi|126455786|ref|YP_001076988.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
 gi|167829714|ref|ZP_02461185.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 9]
 gi|167899812|ref|ZP_02487213.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           7894]
 gi|167916475|ref|ZP_02503566.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           112]
 gi|217424287|ref|ZP_03455786.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|226194084|ref|ZP_03789685.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237507313|ref|ZP_04520028.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
 gi|242313081|ref|ZP_04812098.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
 gi|254182584|ref|ZP_04889178.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|254187135|ref|ZP_04893650.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254262844|ref|ZP_04953709.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
 gi|254296484|ref|ZP_04963940.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           406e]
 gi|52213620|emb|CAH39674.1| putative pilus assembly-related, exported protein [Burkholderia
           pseudomallei K96243]
 gi|76581831|gb|ABA51305.1| pilus assembly transmembrane protein [Burkholderia pseudomallei
           1710b]
 gi|126224097|gb|ABN87602.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
 gi|126229554|gb|ABN92967.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
 gi|157806446|gb|EDO83616.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           406e]
 gi|157934818|gb|EDO90488.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|184213119|gb|EDU10162.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|217392752|gb|EEC32775.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|225934029|gb|EEH30015.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|234999518|gb|EEP48942.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
 gi|242136320|gb|EES22723.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
 gi|254213846|gb|EET03231.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
          Length = 281

 Score =  142 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  + +    V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +
Sbjct: 29  VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82

Query: 98  VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           VR  + +G+P+   KL      GGLS+++  G RA T+ ++    V G   P ++VDV++
Sbjct: 83  VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142

Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211
                     ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+
Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202

Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235
           SV  LSLVLR+  D +  S+  + 
Sbjct: 203 SVGTLSLVLRNQVDKDALSTGGAT 226


>gi|296121061|ref|YP_003628839.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776]
 gi|296013401|gb|ADG66640.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776]
          Length = 390

 Score =  142 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 21/241 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+  ++ ++V+    L+A +   + +            E     I VL+++ ++  G  
Sbjct: 1   MKMKPMILMLVAVACGLIAMMGVQQTLGSRSG-------EGSGPKIKVLVARKEVQAGTP 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + +    +    D  I    + +          RV + +G  +  ++L ++G  G
Sbjct: 54  LDETCVGFKLVSKSEAPDDVISSKEEYDK------RAPRVKLYEGQYVLKKQLGNKGEYG 107

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNIRV 176
            S  +P G R  T+ ++ +    G++ P D VDV +  S +     +      VL  I V
Sbjct: 108 ASMEIPPGMRVVTVPVTATMTHSGLLSPGDRVDVQVTYSYTRPKYGKTFKTRTVLQYIEV 167

Query: 177 IAIDH----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
            A D        + E        +L + P Q   L  AQ    L L+LR   D  P+   
Sbjct: 168 WATDSVRMGTEAAKEDSSQSKNVSLLVYPGQGALLQLAQEKGTLHLLLRGRNDKAPAEQT 227

Query: 233 D 233
            
Sbjct: 228 G 228


>gi|254192395|ref|ZP_04898834.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
 gi|169649153|gb|EDS81846.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
          Length = 281

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  + +    V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +
Sbjct: 29  VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82

Query: 98  VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           VR  + +G+P+   KL      GGLS+++  G RA T+ ++    V G   P ++VDV++
Sbjct: 83  VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142

Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211
                     ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+
Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202

Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235
           SV  LSLVLR+  D +  S+  + 
Sbjct: 203 SVGTLSLVLRNQVDKDTLSTGGAT 226


>gi|283769331|ref|ZP_06342230.1| Flp pilus assembly protein CpaB [Bulleidia extructa W1219]
 gi|283103988|gb|EFC05372.1| Flp pilus assembly protein CpaB [Bulleidia extructa W1219]
          Length = 228

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 100/235 (42%), Gaps = 27/235 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK    +  + +   AL    +A+ L+S    +  +           V ++  ++     
Sbjct: 1   MKK---IKFIAAISGALTMVFLALFLISSSAGRGAQS--------TAVYVASKNIKANQQ 49

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL----VDR 116
           +T ++LE+   P   V +G            EL G + +V ILK   I  E +       
Sbjct: 50  ITEDMLEYKKVPGNLVVEGA------AKNKDELLGKMAKVDILKNSVISKENVYKEGEPE 103

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
            NGGL+ ++ KGKRA +  +  S+ +  +++  D VD+++     +       +LSN+++
Sbjct: 104 KNGGLTYVIAKGKRAISFPVEYSTGISSLLRGGDRVDIILT-RAKDSNFVSKTILSNVKI 162

Query: 177 IAIDHNID-----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           +A+ ++       S       ST T+EL+P     L+       LSL LR+  D 
Sbjct: 163 LALGNDYSVGVNKSGSEGKSYSTVTVELSPEDCVKLMNGSKAGTLSLSLRTPGDN 217


>gi|225872753|ref|YP_002754210.1| putative flp pilus assembly protein CpaB [Acidobacterium capsulatum
           ATCC 51196]
 gi|225791215|gb|ACO31305.1| putative flp pilus assembly protein CpaB [Acidobacterium capsulatum
           ATCC 51196]
          Length = 271

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 18/249 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  +L  ++ + V +    ++  R ++    +               + +   +AVG V
Sbjct: 1   MKSRQLTALLAALVISGGFTLLLGRKLTHSAHRAA--------PQKQYMAAARPIAVGEV 52

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +    ++ + +P      G +         +++ G     P+  G PI    L   G+  
Sbjct: 53  IQAADVKTILWPANLPLQGGMAT------TKDVIGRAAIFPVTVGQPILSTDLAAPGSSL 106

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-KPTVTVVLSNIRVIA 178
           G+++ +P G RA  +      AVGG I P  HVDV++        +P    VL N  V+A
Sbjct: 107 GITTRIPNGMRAIALHTDDVIAVGGFIFPGSHVDVLVTYRNPGSPQPITATVLQNALVLA 166

Query: 179 IDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
             H    D   +    +  TL L+P  A+  V A +   +  VLR+ AD        +D+
Sbjct: 167 TGHQTQPDPQGKPTTVNIVTLLLSPEDAERAVLASTQGTIHFVLRNGADQQKGMPPPADL 226

Query: 237 WDVQEEGKE 245
            ++     +
Sbjct: 227 AELDGYSPQ 235


>gi|167648153|ref|YP_001685816.1| Flp pilus assembly protein CpaB [Caulobacter sp. K31]
 gi|167350583|gb|ABZ73318.1| Flp pilus assembly protein CpaB [Caulobacter sp. K31]
          Length = 296

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 78/295 (26%), Positives = 135/295 (45%), Gaps = 43/295 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVG 58
           M   R+M ++++ V A+   ++  +++S             P       VL++K DLA+G
Sbjct: 1   MNPLRVMIVLIAAVSAIGLAVVMQKMMSGKAPSAPIAQASAPVGKPMTQVLVAKRDLAIG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQ-------------------------PNAMQEL 93
             +T   + W  +P + +   FI +                                + +
Sbjct: 61  QRLTAADVTWQPWPSDTINAAFITNGAADPVPAKATAKAAKAVGDVAEGMIGGVTPEKAV 120

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           +G +VR PIL G+PI   K+V  G GG LS +L  GKRA  + ++  +AVGG + P D V
Sbjct: 121 EGAIVRDPILAGEPITSRKIVRGGEGGYLSVVLSPGKRAMAVPVTSETAVGGFVLPGDRV 180

Query: 153 DVVMVRS---------LSERKPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTP 201
           DV+  R           S +      ++ N+RV+A+D     + D + +V +TATLE+ P
Sbjct: 181 DVIQTREAQSVGEGEGASGKHTIAETIVQNVRVLALDQATAAEKDAKTIVATTATLEVGP 240

Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256
           ++A+AL  A++   ++L LR+  DL   S     +    +E   ++I + G   N
Sbjct: 241 IEAEALTRAKAAGPVTLTLRAYTDLGGPSG----LAVRSQEASVVRINRGGETSN 291


>gi|317154606|ref|YP_004122654.1| Flp pilus assembly protein CpaB [Desulfovibrio aespoeensis Aspo-2]
 gi|316944857|gb|ADU63908.1| Flp pilus assembly protein CpaB [Desulfovibrio aespoeensis Aspo-2]
          Length = 273

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 120/275 (43%), Gaps = 30/275 (10%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              L+ I +S + AL  G++     S     T++ +    A+ + V+++  DL  G+ +T
Sbjct: 5   ARALIQIGISLILALGTGVLIFMWTSGV---TQQPVAAPRAETVPVVVALTDLRPGIKLT 61

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGG 120
           P +LE   F  ++   G   +    +      G ++ V +   + +   KL D     GG
Sbjct: 62  PAMLETRQFTPDSRPSGAFGEPGLLD------GRVLGVAVGANEAVTEAKLADASVIGGG 115

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIRVI 177
           +S+L+  GKRA ++  +    + G ++P D VDV++       ++ +P   +VL  ++V+
Sbjct: 116 VSALIEPGKRAMSVKGNAVMGLAGFVRPGDRVDVIVSLVQGRGNQEEPVTKLVLERVKVL 175

Query: 178 AIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           A    + + +     ++    TLELTP +++ L  A +   L+  LR+  D +   ++  
Sbjct: 176 ATGTELQAPDTEGKAASVDVYTLELTPDESERLALAATQGTLNFALRNATDTDKVLTDGV 235

Query: 235 DV-------------WDVQEEGKEIQIIKAGVIVN 256
            V               V+     +++I  G    
Sbjct: 236 TVNKALAALRPAPKPAPVRRNQVSVEVITGGETTT 270


>gi|167744174|ref|ZP_02416948.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 14]
          Length = 281

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  + +    V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +
Sbjct: 29  VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82

Query: 98  VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           VR  + +G+P+   KL      GGLS+++  G RA T+ ++    V G   P ++VDV++
Sbjct: 83  VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142

Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211
                     ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+
Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202

Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235
           SV  LSLVLR+  D +  S+  + 
Sbjct: 203 SVGTLSLVLRNQVDKDALSTGGAT 226


>gi|187927688|ref|YP_001898175.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J]
 gi|187724578|gb|ACD25743.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J]
          Length = 283

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 24/252 (9%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
               ++ ++V+ V  + A + A R +S     + +           V+++  D+ +G  +
Sbjct: 3   NARAIVMLIVALVAGIAAVVSASRWLSQQSTSSVK----------QVVVAASDMDLGQPL 52

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120
               L  V++P  ++  G  DD       + L G +VR  + KG+PI   KL      GG
Sbjct: 53  GNEQLRTVSWPAGSLPPGTFDDP------KALQGRVVRASLQKGEPILENKLAPIGTKGG 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV------VLSNI 174
           LS+++ +GKRA T+ ++    V G   P + VDV++  +   +  +         VL  I
Sbjct: 107 LSAVIAEGKRAITVRVNDVVGVAGFALPGNLVDVIVNTNEDAKSASNNNNSISKIVLEKI 166

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D+  +++  
Sbjct: 167 LVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQVDVAATATGG 226

Query: 234 SDVWDVQEEGKE 245
           +    +      
Sbjct: 227 ATKGTLLGTPAA 238


>gi|329890997|ref|ZP_08269340.1| flp pilus assembly protein CpaB [Brevundimonas diminuta ATCC 11568]
 gi|328846298|gb|EGF95862.1| flp pilus assembly protein CpaB [Brevundimonas diminuta ATCC 11568]
          Length = 310

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 125/303 (41%), Gaps = 50/303 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  ++  I ++ + A+   ++   + S                   VL++  DL  G  
Sbjct: 1   MKPAKIAVICIAALAAIGLALVVRAMGSSGQPTATATAAVETRPMAKVLVAARDLEPGRR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDV------------------------------------ 84
           +    L W  +P + +   FI D                                     
Sbjct: 61  LVDADLSWKDWPADELNPLFITDGPPPPSKAEGAAAENAAVEGAGDAKSTTVDKAMKAVA 120

Query: 85  --HQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSA 141
             + P A  +  G +VR PIL G+P+   K+V    +G +++ L  G RA  + +++ +A
Sbjct: 121 ELNTPGAKSDYIGAVVREPILAGEPLVARKIVRAGDSGYMAAYLEPGMRAMAIRVTVETA 180

Query: 142 VGGMIKPNDHVDVVMVRSLSERK------PTVTVVLSNIRVIAIDHN--IDSDERVLVGS 193
            GG I P D VDV++ R +           +   V+ N++V+AID +     DE+ +VG+
Sbjct: 181 AGGFILPGDRVDVLLTREVKGSGDDGGTKYSAATVMRNVKVLAIDQSTRAAEDEQAVVGA 240

Query: 194 TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS---SEDSDVWDVQEEGKEIQIIK 250
           TATLELT   A+ L  A+S  +LSLVLRS AD    S               G  +++ +
Sbjct: 241 TATLELTGRDAEVLALAKSEGELSLVLRSYADTAGPSGHVPGAVRGRATGGGGSVVRVYR 300

Query: 251 AGV 253
            G 
Sbjct: 301 EGQ 303


>gi|325108089|ref|YP_004269157.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM
           5305]
 gi|324968357|gb|ADY59135.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM
           5305]
          Length = 418

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 109/248 (43%), Gaps = 20/248 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+  ++ +  +    L+A +   ++++    + +        + + VL++  D++ G++
Sbjct: 1   MKMKTILVLAFAVGCGLIAMVGVQQMIAQQSNKDQN-------QTVEVLVAAQDISPGVL 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +      +   P E V    +       + +E     + VP++ GD IR  KL  RG   
Sbjct: 54  LNQANCAFKKLPVEGVPSDAVR------SKEEYAERGLLVPVMAGDIIRKSKLGARGEIA 107

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----PTVTVVLSNIRV 176
            S+ +P G R  ++ ++ +    G+++P D VD+ +   +   +        ++L  I V
Sbjct: 108 ASASIPAGMRTVSIQVNDTKTHSGLLQPGDRVDLQVTYEVRTSEGFRVTKTAILLEYIEV 167

Query: 177 IAID---HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            A D   +    + + +     TL +TP QA  +  A +  +L  ++RS AD +  + E 
Sbjct: 168 FASDAFRNLEAGESKEIKAKNITLLVTPDQANFIQLANTKGELVPIMRSRADSHLITPEG 227

Query: 234 SDVWDVQE 241
            D   + E
Sbjct: 228 VDAQVIAE 235


>gi|114568969|ref|YP_755649.1| Flp pilus assembly CpaB [Maricaulis maris MCS10]
 gi|114339431|gb|ABI64711.1| Flp pilus assembly CpaB [Maricaulis maris MCS10]
          Length = 278

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 19/227 (8%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
             + +L ++ D+ +G  ++     W A+P+E +  G+I + ++   + +  G +VR PI 
Sbjct: 42  PAVRILAARRDVEIGERISAADFYWQAWPDEALAPGYIVE-NRGQTIADFAGSVVRAPIS 100

Query: 104 KGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS- 161
           +G+PI   +LV  G+ G ++++L  G RA  + IS  +  GG I PND VDV++      
Sbjct: 101 QGEPITGRRLVQPGDAGFMAAVLTPGMRAVAVPISAETGAGGFILPNDRVDVIVSFEEET 160

Query: 162 ------ERKPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSV 213
                  R      ++ N RV+AID   + ++D+ V VG TATLELTP QA+A+  A + 
Sbjct: 161 EGRRGAGRAFVARTIVENARVLAIDQSFSSEADDEVAVGETATLELTPDQARAVSVAVAR 220

Query: 214 AKLSLVLRSIADLNPSS--------SEDSDVWDVQEEGKEIQIIKAG 252
            +++LVLRS+ D + +          E       +     + +I+ G
Sbjct: 221 GEIALVLRSLTDNSGAPVLVSGGELPEAPSQSFQERRSSSVTLIRYG 267


>gi|167841424|ref|ZP_02468108.1| putative pilus assembly protein CpaB [Burkholderia thailandensis
           MSMB43]
          Length = 281

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 12/204 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  + +    V ++  D+ +G  + PN L  V +P  +V  G   D      ++ L+G +
Sbjct: 29  VQTSSSAVTPVAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82

Query: 98  VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           VR  + +G+P+   KL      GGLS+++  G RA T+ ++    V G   P ++VDV++
Sbjct: 83  VRTSLARGEPVLGTKLAPIGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142

Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211
                     ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+
Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPDQAEKLDLAR 202

Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235
           SV  LSLVLR+  D +  ++  + 
Sbjct: 203 SVGTLSLVLRNQIDKDALNTGGAT 226


>gi|296284551|ref|ZP_06862549.1| Flp pilus assembly protein CpaB [Citromicrobium bathyomarinum
           JL354]
          Length = 353

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 119/255 (46%), Gaps = 13/255 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF-INVLISKGDLAVGM 59
           M   +L+ ++ + V A     IA  + +          T         VL+++  L VG 
Sbjct: 1   MDRKKLVLLLAALVIAAGTAFIARSMFAGASAPEVAAATGPVEPTGPRVLVAQRSLPVGT 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
           ++T + + + A+P+E V D +  D     +   L G +VR  I  G+P+    LV  G+ 
Sbjct: 61  IITQDAISYQAWPQELVRDAYFIDGEADVSK--LLGTVVRYQITAGEPVTQGALVAPGDR 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
           G L++ L  G RA T+ ++  ++V G + P D VD++M    +E       +L N+RV+A
Sbjct: 119 GFLAAALGPGMRAITVPVNAQTSVAGFVFPGDRVDLMMTHE-TEGVKATETILRNLRVLA 177

Query: 179 IDHNIDSDERVLVG-----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN---PSS 230
            D +   +           ST TLE+TP  A+ +  AQ+V  LSL LRSIAD +     +
Sbjct: 178 TDQSTSQNTVDGQTVVNGFSTVTLEVTPKIAEKIAVAQTVGTLSLSLRSIADNSTDLERA 237

Query: 231 SEDSDVWDVQEEGKE 245
               D+    +   E
Sbjct: 238 LASGDIAIPDDATPE 252


>gi|197106458|ref|YP_002131835.1| pilus assembly protein CpaB [Phenylobacterium zucineum HLK1]
 gi|196479878|gb|ACG79406.1| pilus assembly protein CpaB [Phenylobacterium zucineum HLK1]
          Length = 287

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 7/227 (3%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---NVLISKGDLAVGM 59
             R+M +  + + +  A  +  + +     Q         A       VL++   L  G 
Sbjct: 4   SRRMMYLGAAALLSSGAVFLTQQWLQGQLSQATASARAGAAPAAAEAQVLVAAQALPPGT 63

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           ++ P+ + W A+P +    G++      +   ++ G +VR  +  G P+    +V  G+ 
Sbjct: 64  ILKPSHVRWQAWPADAPTAGYLTSAA--SGPAQIAGAVVRGELQPGQPLTTTGVVQPGDR 121

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
             L+++L  G RA T+++S +S V G I P D VD+V+ R + + +     VL+++RV+ 
Sbjct: 122 SFLAAVLKPGHRAVTVNVSAASGVAGFIFPGDRVDLVLSRRIGDDRHVSETVLTDVRVVG 181

Query: 179 IDHN-IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           ID    +  + V+V  TATLE+TP QA+ +     + KLSL LRS+A
Sbjct: 182 IDQRVANEKQEVVVPQTATLEVTPKQAEIVALMPELGKLSLSLRSLA 228


>gi|127511580|ref|YP_001092777.1| SAF domain-containing protein [Shewanella loihica PV-4]
 gi|126636875|gb|ABO22518.1| SAF domain protein [Shewanella loihica PV-4]
          Length = 298

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 115/281 (40%), Gaps = 25/281 (8%)

Query: 1   MKLTRL----MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLA 56
           MKL  +    + +V++ +   ++             +  + +T++     +V+++   L 
Sbjct: 1   MKLKSIDFNWVLLVIALILGGISAWATKNYFIAKEQELRDELTKDNIAMADVIVATQPLK 60

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G +++   +       + +    I     P+   E+ G ++  P+  G P+    L   
Sbjct: 61  KGDIISQANMSVRQIRADTLPLDAIH----PSRFGEVAGQMLLQPMAPGRPLIETYLPGM 116

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSN 173
                S +L +G+RA T+DI   ++  GM+ P+DH+D+++      R   +  + ++L +
Sbjct: 117 RVAQFSDILKEGQRAVTIDIDEINSSAGMLVPSDHIDLLLSFKEEGRNGERKRLQLLLED 176

Query: 174 IRVIAIDHNIDSD---------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           + V+A                 +     +T TL L+   A  +  A+       +LR+  
Sbjct: 177 VTVLATGRRSIDVNPELVDTLYDNPNAYNTVTLALSVNDAARVSLAKQKGDFVTLLRNQK 236

Query: 225 DLNPS---SSEDSDVWDVQEEGKE--IQIIKAGVIVNKDGE 260
           + +     S  +  +++ +EE  E  +++I  G  +    +
Sbjct: 237 ESSALEFISMHEGQLFNREEENHELAVEVITGGSGIKTSTQ 277


>gi|241662166|ref|YP_002980526.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D]
 gi|309780761|ref|ZP_07675502.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA]
 gi|240864193|gb|ACS61854.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D]
 gi|308920443|gb|EFP66099.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA]
          Length = 283

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 18/209 (8%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
             + ++  D+ +G  ++P  ++ V +P  ++  G I+D H  +      G +VR  + +G
Sbjct: 37  TKIAVAATDIDLGQRLSPEAIKLVDWPASSLPPGAINDPHALD------GRVVRASLTRG 90

Query: 106 DPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--- 161
           +P+   KL      GGLS+++ +GKRA T+ ++    V G   P  +VD+++        
Sbjct: 91  EPVLDSKLTPVGTAGGLSAVIAEGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQDSRE 150

Query: 162 -------ERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSV 213
                    +    +VL  I V+A+   ++ D+ +  V +  TLE+TP QA+ +  A+SV
Sbjct: 151 AKPGADRNDQSISKIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPEQAEKIDLARSV 210

Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
             LSLVLR+  D     +  +    + +E
Sbjct: 211 GNLSLVLRNQVDSQHDVTAGATKSTLLKE 239


>gi|85705149|ref|ZP_01036249.1| CpaB family protein [Roseovarius sp. 217]
 gi|85670471|gb|EAQ25332.1| CpaB family protein [Roseovarius sp. 217]
          Length = 289

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 105/261 (40%), Gaps = 13/261 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTE--EVITENPAKFINVLISKGDLAVG 58
           M++   + +++    A  A  +A   +  +  Q            + +++ ++   +  G
Sbjct: 1   MRIVFGLVLMLGLGLAGFAVYMAKTYIDGYQQQLALERQQRAPNIETVDIYVANQLIKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117
             +T   +  +AFP++++ +G      +               + K +PI   K+     
Sbjct: 61  EPLTTEAVRLIAFPKDSLPEGAFSSTEELFPSGASVVRKALRRMEKNEPILAVKVTKPGE 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---------SLSERKPTVT 168
             G++S L +G RA  + + ++S V G ++P D VD+                       
Sbjct: 121 EAGITSQLERGMRAFAIKVDVTSGVSGFLRPGDTVDIYWTGSIGAGNLRTEEDSTGEVTK 180

Query: 169 VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           ++ + +++IA+D   D D    +V  T  + +TP Q  AL  AQS  +LSL L   +D  
Sbjct: 181 LIDTGVKLIAVDQVADMDMTEAVVARTVAVAVTPNQVAALAQAQSTGRLSLSLVGASDDT 240

Query: 228 PSSSEDSDVWDVQEEGKEIQI 248
            + S + D   +     +  +
Sbjct: 241 VAQSIEVDQRRLLGLTAQAVV 261


>gi|51245388|ref|YP_065272.1| hypothetical protein DP1536 [Desulfotalea psychrophila LSv54]
 gi|50876425|emb|CAG36265.1| hypothetical protein DP1536 [Desulfotalea psychrophila LSv54]
          Length = 285

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 106/245 (43%), Gaps = 15/245 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
            + RL  +V++ V A     +  + +S  +V  E+   +      ++ ++  D++ G  +
Sbjct: 3   NIPRLTFLVIAVVIAFSVSFVVYKKMSTPNVVMEQ---KPGQATTDIAVAVKDMSRGSKI 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NG 119
               ++   + +E +  G   D      ++++ G +V  P+   +PI    L  +    G
Sbjct: 60  GSEDVQMATYLQETLPSGHFTD------LEQVVGRIVLSPLTTTEPILNSDLAPQDLTKG 113

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVI 177
           GL++++   KRA  + +     V G + P   VDV++   +    R      VL NI V+
Sbjct: 114 GLAAVITPTKRAMAIKVDNVIGVAGFLHPGHLVDVLVSIEKPGDTRSQITKTVLQNILVL 173

Query: 178 AIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           ++       +D++V   +  TLE+   + + L  A +  ++ L LR  +D+ P  +    
Sbjct: 174 SVGTLAQESADKKVHKVTVVTLEVDLEEGEKLALAVNEGRIQLALRGYSDVEPVLTRGIT 233

Query: 236 VWDVQ 240
              + 
Sbjct: 234 KTSLL 238


>gi|308050060|ref|YP_003913626.1| Flp pilus assembly protein CpaB [Ferrimonas balearica DSM 9799]
 gi|307632250|gb|ADN76552.1| Flp pilus assembly protein CpaB [Ferrimonas balearica DSM 9799]
          Length = 288

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 113/248 (45%), Gaps = 17/248 (6%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           +  L  +++S  F + A ++A   +        +   +       V+     +  G ++ 
Sbjct: 1   MRSLFFVLISIGFGIGAVLLAQNWLKQGQPSDIDDNRQP------VMTMAISVPSGTIIQ 54

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-L 121
              L   + P   V D  +         +++ G++ + P+++GD +  +KLV +G G  L
Sbjct: 55  EKHLVLKSVPPGLVPDEVLSKP------EQVVGMVAKFPLVEGDFLSRQKLVPKGEGSVL 108

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIRVIA 178
           +SL+    RA T+ ++    V G + P + VDV++    R  ++      VVLSN++V+A
Sbjct: 109 ASLIAPNMRAVTIRVNDVVGVAGFLLPGNRVDVLVTLAKRRSADETAQTEVVLSNLKVLA 168

Query: 179 IDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           +D   + D  + ++    TLE+T  QA+ L++A+S   + L LR+  D    +    +  
Sbjct: 169 VDQRANQDSNQPVLVRAVTLEVTLEQAEELMSARSRGNIQLALRNPNDDVEVAVASDEAA 228

Query: 238 DVQEEGKE 245
              +   E
Sbjct: 229 QTAQVAPE 236


>gi|86360579|ref|YP_472467.1| putative cpaB pilus assembly protein [Rhizobium etli CFN 42]
 gi|86284681|gb|ABC93740.1| putative cpaB pilus assembly protein [Rhizobium etli CFN 42]
          Length = 304

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 101/248 (40%), Gaps = 8/248 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+ + ++ +V++ V A  A       +S    +   +      +   V ++   +  G  
Sbjct: 1   MRSSTILSLVIAFVLAAAAVFGMRAYLSDQKARLLAMNGVKTEERTLV-VAATPMRFGDR 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +    L  + +P      G    +       +         I  G+P+   K+   G   
Sbjct: 60  IRSENLRAIPWPSNETPTGSFVSIDLVVG-NDAQPRYAMAAIDPGEPVLSSKITGAGERA 118

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175
            LS+ L +G +A ++ ++    V G ++P+D VDV++           +  V V+L  ++
Sbjct: 119 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRGPAGNDQTFVDVLLQGVK 178

Query: 176 VIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+A+D   D   +   V  T T E+T  +A+ L    S+  LSL LR++A  +   +   
Sbjct: 179 VLAVDQTADERKDEPSVVKTVTFEVTTDEAQRLTLGSSIGTLSLALRNVASSSVEQTRPI 238

Query: 235 DVWDVQEE 242
            V D+   
Sbjct: 239 TVADLGGG 246


>gi|83312839|ref|YP_423103.1| Flp pilus assembly protein CpaB [Magnetospirillum magneticum AMB-1]
 gi|82947680|dbj|BAE52544.1| Flp pilus assembly protein CpaB [Magnetospirillum magneticum AMB-1]
          Length = 300

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 117/272 (43%), Gaps = 24/272 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ +VV+ + A    ++A   +     +  +   E     + +LI   D+  G  
Sbjct: 1   MRP-IVIIVVVAALAAGGTAMLAKSWLDRQEARRAKAADEPA--TVEILIINRDVPSGAA 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + L + ++P+  V    +      ++     G++ R P+ +G+P+           G
Sbjct: 58  LAGDDLRYESWPKAAVSPRLVTRKPGEDSKAAFVGMIARRPLAEGEPVSAATTFRPEASG 117

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------- 165
            ++ LL  G RA ++ I+  +AV G + P D VDVV+   + + +               
Sbjct: 118 VMAGLLAPGMRAISIAITNPTAVSGFVTPGDRVDVVLASDIKKSEEGINAEAGSGLLLRY 177

Query: 166 TVTVVLSNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
               VL+++RV+AID  I    D   + G TATLE+TP QA+ L  A  +  L L LR  
Sbjct: 178 GAETVLADLRVLAIDQQITRGRDGAPIQGKTATLEVTPKQAEILTVAGMMGTLQLSLRPQ 237

Query: 224 ----ADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
                   P+  E  D     E GK +Q +  
Sbjct: 238 RGEDGAAKPAMGEVLDFTADLEAGKVLQAVVG 269


>gi|307294423|ref|ZP_07574267.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
 gi|306880574|gb|EFN11791.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
          Length = 307

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              L+ + ++ +  L A  IA   +S       E   +       V+++   L  G  VT
Sbjct: 4   RRSLIVLGLAILLGLAAVFIANSYLSS-----AEKAPQADGGMAKVVVATVSLPFGSAVT 58

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121
              +  V +P  +V  G   D  Q  ++    G +V   I  G+PI   KL   G    +
Sbjct: 59  AEKIRTVDWPANSVPPGAFRDPIQLTSLG--KGRVVLRQIEPGEPILASKLSGEGGRATM 116

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE----RKPTVTVVLSNIRVI 177
           S++L    RA  + +S  +A GG + P D VDV + R+L++     +    V+L   RVI
Sbjct: 117 SAVLAPEMRAVAVRVSDVAAAGGFVLPGDTVDVFVTRTLTDPVAGSQQITDVLLQGTRVI 176

Query: 178 AIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           AID N  D+ +   VG TATLE+  + A+ LV AQ V +L+LVLR++ D    + +   +
Sbjct: 177 AIDQNANDTSKDPAVGKTATLEVNQVDAQKLVLAQQVGQLTLVLRNLTDKPNPAVQTVGI 236

Query: 237 WDVQEE 242
            D+++ 
Sbjct: 237 EDLRDG 242


>gi|21673268|ref|NP_661333.1| hypothetical protein CT0429 [Chlorobium tepidum TLS]
 gi|21646356|gb|AAM71675.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 278

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 114/246 (46%), Gaps = 19/246 (7%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + R + +V++     +   IA R +S                   V+I +  +A G  + 
Sbjct: 1   MKRPIFVVIALTLGAMTAFIAARWMSGPKASGPS-----------VVIVEQPIAAGRPIL 49

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121
              ++ +++    V               ++ G +  VP++ G+P+   KL   G  GGL
Sbjct: 50  AGQIKAISWSGSVVPQEAFSRTA------DVVGRIALVPMIPGEPVLPGKLAPIGATGGL 103

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           SS++P GKRA ++ ++    V G   P  +VD+++       +P   +VLS ++V+A++ 
Sbjct: 104 SSIIPAGKRAISVRVNDVVGVAGFALPGSYVDILVSGRDVSGQPFSRIVLSKVKVLAVEQ 163

Query: 182 NI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
           +     ++  V +  TLEL+P +++ L  A+++  LSLVLR+  D    +S    + DV 
Sbjct: 164 DTVAEKDKPKVVNAVTLELSPQESEKLDLARNIGALSLVLRNELDTTVVNSVGVRLSDVV 223

Query: 241 EEGKEI 246
              + +
Sbjct: 224 YPQRGV 229


>gi|27378603|ref|NP_770132.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 gi|27351751|dbj|BAC48757.1| blr3492 [Bradyrhizobium japonicum USDA 110]
          Length = 329

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/265 (26%), Positives = 114/265 (43%), Gaps = 16/265 (6%)

Query: 1   MKLTRLMGIVVSGVFALVA-GIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVG 58
           M     + I++  + A  A G+IA  +  P  V          P   +   ++   L+ G
Sbjct: 13  MSSALRLSIIIVLLLATAAFGLIAYNMNLPKQVPVAVTEQGPAPPSTVGYFVAARPLSRG 72

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
            +         +   E +  G I +   P+A   L G LVR  +  G PI L+ ++   +
Sbjct: 73  TLARDEDFAVRSALPERLPAGAILE--TPDAKAGLTGSLVRKFVEAGSPITLQDVLRPRD 130

Query: 119 -GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSN 173
            G L+S+L    RA ++ +   S V G+I+P DHVDV++     ++   R+    VVL N
Sbjct: 131 RGFLASVLAPDSRAISIKVDEESGVSGLIRPGDHVDVLLTQVFEKADPARRALSEVVLGN 190

Query: 174 IRVIAIDHNIDSDERV------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL- 226
           +RVIAID  I    R           T +LEL P Q K +  A+ +  +SL +R+  +  
Sbjct: 191 VRVIAIDQEIVQGGRTVSSLAGKQAQTVSLELAPDQVKKITVAKQIGTISLAVRAAVEQW 250

Query: 227 NPSSSEDSDVWDVQEEGKEIQIIKA 251
           + + +      DV  E      +  
Sbjct: 251 DTADTGAMSSCDVSPEIARQNAVAG 275


>gi|194288837|ref|YP_002004744.1| pilus assembly transmembrane protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193222672|emb|CAQ68675.1| PILUS ASSEMBLY TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis LMG
           19424]
          Length = 279

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 121/252 (48%), Gaps = 23/252 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK TR ++ ++++ V  + A + A R +      + + +            +  DL +G 
Sbjct: 1   MKNTRAILMLLIALVAGVAAVVSASRWLVQQSSSSVKQVVV----------AANDLNLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            +    L  V++P  +V  G   D      ++ L+G +VR  + +G+PI   KL      
Sbjct: 51  PLNGAQLRMVSWPAGSVPPGAFTD------LKALEGRVVRTSLQRGEPILDAKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNI 174
           GGLS+++  GKRA T+ ++    V G   P ++VDV++        S+      +VL  I
Sbjct: 105 GGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEEAKSSQNSSISKIVLEKI 164

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  DE +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D+   S+  
Sbjct: 165 LVLAVAQQVSRDETQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQMDVADISTGG 224

Query: 234 SDVWDVQEEGKE 245
           +    +  +  E
Sbjct: 225 ATKGTLLGKAPE 236


>gi|13475418|ref|NP_106982.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
 gi|14026170|dbj|BAB52768.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
          Length = 354

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 12/254 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ IV++GVF ++A ++A   ++       +    N  +   V+++   L  G  
Sbjct: 1   MRANTVIMIVLAGVFGVLAVVLANIWLANQRSAIAQT---NDIQRDTVVVAAVALKFGDT 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK---GDPIRLEKLVDRG 117
           ++ + L  VA+P   V  G      +      L G   +  +      +P+   K+   G
Sbjct: 58  LSADKLREVAWPAGAVPAGAFKTTEELLTKDVLPGAAPKQALQAIGVNEPVLATKITGPG 117

Query: 118 N-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLS 172
               LS++L +G +A ++ ++    V G + P D VDV++ R         +  V V+L 
Sbjct: 118 QRATLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDVLLTRTVRSDDGADQSFVDVLLQ 177

Query: 173 NIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
            +RV+A+D   D   +   V  + TLE +   A+ L  A    +LSL LR  A     ++
Sbjct: 178 GMRVLAVDQVADESKDSPTVVKSVTLEASTKDAQKLTLAAGAGQLSLALRQAAASKGETT 237

Query: 232 EDSDVWDVQEEGKE 245
           E   + D+  E   
Sbjct: 238 ERVTLSDLTGEMPA 251


>gi|84687278|ref|ZP_01015158.1| CpaB family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84664711|gb|EAQ11195.1| CpaB family protein [Rhodobacterales bacterium HTCC2654]
          Length = 274

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 97/233 (41%), Gaps = 8/233 (3%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           +    A  A  +A   +  +      E        +   + + K  +A G  +T   +  
Sbjct: 1   MGVGLAGFAVYMARDYIGNYQAALEQERAARAQMVQTAEIYVVKESVAYGDRITDENIRL 60

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPK 127
             FP + + +G      +     E     V   + K + +   K+ + G + G+++ L  
Sbjct: 61  TRFPVDAIPEGAFKTEEELFPQGEKRYRTVLRAMEKDEALLAVKVTEAGADAGVAARLAS 120

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIRVIAIDHNI 183
           G RA  + + ++S V G ++P D VD+      S      +    ++ +NIR+IAID   
Sbjct: 121 GMRAFAIRVDVASGVSGFLRPGDKVDIYWTGRGSSDSVTSQEVTKLIQTNIRIIAIDQMA 180

Query: 184 DSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           D+D     V  T T+E TP Q  AL  AQ+  +++L L    D   + + + D
Sbjct: 181 DTDRTAPTVARTVTIEATPEQVAALAQAQATGRMALSLVGAQDDTVAEAVEID 233


>gi|300692330|ref|YP_003753325.1| pilus assembly (cpaB), transmembrane protein [Ralstonia
           solanacearum PSI07]
 gi|299079390|emb|CBJ52061.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia
           solanacearum PSI07]
          Length = 284

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 106/217 (48%), Gaps = 19/217 (8%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
            ++ +    V ++  D+ +G  ++P +++ V +P  ++  G + D H  +      G +V
Sbjct: 30  QQSASGITKVAVASADVELGQRLSPEMVKLVDWPAASLPPGVVTDAHALD------GRVV 83

Query: 99  RVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-- 155
           +  + +G+P+   KL      GGLS+++  GKRA T+ ++    V G   P  +VDV+  
Sbjct: 84  KASLTRGEPVLESKLTPVGTAGGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDVIVN 143

Query: 156 ---------MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAK 205
                       +  +      +VL  I V+A+   +  D+ +  V +  TLE+TP QA+
Sbjct: 144 TMEDEKQAKAAGNDQKEHSISKIVLEKILVLAVAQEVGRDDTKPKVVNAVTLEVTPDQAE 203

Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
            L  A+SV  LSLVLR+ AD   + +  +    + +E
Sbjct: 204 KLDLARSVGTLSLVLRNQADPRAADTTGATKSTLLKE 240


>gi|16127176|ref|NP_421740.1| pilus assembly protein CpaB [Caulobacter crescentus CB15]
 gi|221235977|ref|YP_002518414.1| pilus assembly protein CpaB [Caulobacter crescentus NA1000]
 gi|7208424|gb|AAF40191.1|AF229646_3 CpaB [Caulobacter crescentus CB15]
 gi|13424572|gb|AAK24908.1| pilus assembly protein CpaB [Caulobacter crescentus CB15]
 gi|220965150|gb|ACL96506.1| pilus assembly protein CpaB [Caulobacter crescentus NA1000]
          Length = 297

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 134/294 (45%), Gaps = 42/294 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVI------TENPAKFINVLISKGD 54
           M   RL+ ++++ V A+   ++  R +     +   ++               VL++K D
Sbjct: 1   MSPVRLLIVLIAAVSAIGLAVVLQRALGGAPAKPTGLVEAPGGPAAPGKPMTQVLVAKRD 60

Query: 55  LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP------------------------NAM 90
           L VG  +    + W A+P +++   FI +   P                        +  
Sbjct: 61  LPVGTRLVATDVGWQAWPSDSINAAFITNGSAPVTPDGKVEAAKAVVAATADQMIGGDPA 120

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPN 149
           + ++G +VR PIL G+PI   K+V  G GG LS +L  GKRA ++ ++  +AVGG I P 
Sbjct: 121 KIVEGAIVRDPILIGEPITPRKIVRGGEGGYLSVVLTPGKRAMSVPVTSDTAVGGFILPG 180

Query: 150 DHVDVVMVRSLSERK------PTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTP 201
           D VDV+  R                 VL NIRV+A+D     + D + +V +TATLE+ P
Sbjct: 181 DRVDVLSTRDAPAAGDQGGKVMIAETVLQNIRVLALDQATAAEKDAKSIVAATATLEVGP 240

Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIV 255
           ++A+AL  A++   ++L LR+  D+   S        V  +   ++I + G   
Sbjct: 241 VEAEALARAKAGGPITLALRAYTDMGGPSGV---THAVAGDDSTVRINRGGQTT 291


>gi|94309593|ref|YP_582803.1| Flp pilus assembly CpaB [Cupriavidus metallidurans CH34]
 gi|93353445|gb|ABF07534.1| Flp pilus assembly CpaB precursor [Cupriavidus metallidurans CH34]
          Length = 281

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 103/200 (51%), Gaps = 12/200 (6%)

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +  DL +G  +  + L+ V++P  +V  G  +D       + LDG +VR  + +G+PI  
Sbjct: 42  AANDLDLGQPLNGSQLKLVSWPAGSVPPGAFEDP------KTLDGRVVRTSLQRGEPIID 95

Query: 111 EKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKP 165
            KL      GGLS+++  GKRA T+ ++    V G   P ++VDV++  +      +   
Sbjct: 96  AKLAPVGTKGGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEDTKSAQNGS 155

Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
              +VL  I V+A+   +  D+ +  V +  TLE++P QA+ L  A+SV  LSLVLR+  
Sbjct: 156 ISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVSPDQAEKLDVARSVGTLSLVLRNQM 215

Query: 225 DLNPSSSEDSDVWDVQEEGK 244
           D+   ++  +    +  + +
Sbjct: 216 DVADINTGGATKHTLLGKAE 235


>gi|167574002|ref|ZP_02366876.1| putative pilus assembly protein CpaB [Burkholderia oklahomensis
           C6786]
          Length = 282

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 12/204 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  + +    V ++  D+ +G  + PN L  V +P  +V  G   DV      + L+G +
Sbjct: 29  VQTSSSAVTPVAVAAIDVNLGEPLVPNQLRVVNWPTASVPPGAFTDV------KSLEGRV 82

Query: 98  VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           VR  + +G+P+   KL      GGLS+++  G RA T+ ++    V G   P ++VDV++
Sbjct: 83  VRTSLARGEPVLGSKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142

Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211
                     ++    +VL  I V+A+   +  D+    V +  TLE+TP QA+ L  A+
Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLAR 202

Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235
           SV  LSLVLR+  D +  ++  + 
Sbjct: 203 SVGTLSLVLRNQVDKDALNTGGAT 226


>gi|323493504|ref|ZP_08098626.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
 gi|323312327|gb|EGA65469.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
          Length = 280

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 108/268 (40%), Gaps = 25/268 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RLM + +     +++ +    L+     Q  +        F  VL++K  + +G  
Sbjct: 1   MTAKRLMLLSL-----VLSAVGISILLLSQSEQKNDQQQAAAETFKRVLVAKQKVDIGQP 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
            T N+ EW    ++ + +       +  ++Q+    +    IL G  +          G 
Sbjct: 56  YTLNMFEWKQVSQQELDNYLDYISREAFSVQQFTPGIAHSEILAGQVMSAGDFSTPKGGV 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVV 170
            L+  +  G RA ++ +   +A  G ++P D VD++++ S  E             VT +
Sbjct: 116 SLAFKVRNGYRAISVPVDSVTANSGFVQPGDKVDILLLGSEVEELKKYDNKVSGLYVTTI 175

Query: 171 LSNIRVIAIDHNIDSD--ERVLVG--------STATLELTPMQAKALVAAQSVAKLSLVL 220
             ++RV+A +   D+D  ++            S+ +LE+ P QA  +V A  + KL+L L
Sbjct: 176 AKDVRVLAFNQYSDADNFQKKRSAYGADLPDNSSVSLEVNPEQATQIVLANQIGKLTLSL 235

Query: 221 RSIADLNPSSSEDSDVWDVQEEGKEIQI 248
           R   + +        V   Q   +  Q+
Sbjct: 236 RGAGEDDSDDQSIYTVKSTQINPESKQV 263


>gi|113866745|ref|YP_725234.1| flp pilus assembly protein [Ralstonia eutropha H16]
 gi|113525521|emb|CAJ91866.1| flp pilus assembly protein [Ralstonia eutropha H16]
          Length = 280

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 23/252 (9%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK TR ++ ++++ V  + A + A R +      +   +            +  DL +G 
Sbjct: 1   MKNTRAILMLLIALVAGVAAVVSASRWLVQQSSSSVRQVVV----------AANDLNLGQ 50

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            +  + L  V++P  +V  G  +D      M+ L+G +VR  + +G+P+   KL      
Sbjct: 51  PLNGSQLRMVSWPTGSVPPGAFED------MKALEGRVVRTSLQRGEPVLDAKLAPVGTK 104

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNI 174
           GGLS+++  GKRA T+ ++    V G   P ++VDV++  +      +      +VL  I
Sbjct: 105 GGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEEAKTTQSGSISKIVLEKI 164

Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
            V+A+   +  D+ +  V +  TLE+TP QA+ L  A+SV  LSLVLR+  D+   S+  
Sbjct: 165 LVLAVAQQVSRDDTQPKVVNAVTLEVTPEQAEKLDVARSVGTLSLVLRNQLDVADISTGG 224

Query: 234 SDVWDVQEEGKE 245
           +    +  +  E
Sbjct: 225 ATKGTLLGKTPE 236


>gi|118581114|ref|YP_902364.1| SAF domain-containing protein [Pelobacter propionicus DSM 2379]
 gi|118503824|gb|ABL00307.1| SAF domain protein [Pelobacter propionicus DSM 2379]
          Length = 291

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 15/220 (6%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
           +++       K   ++++  D+ VG  +    L+ +A+P  ++  G   D       + L
Sbjct: 30  SKKSKETEAGKGKGIVVASADIPVGSKLNTTHLKMMAWPATSIPPGSFTD------TKAL 83

Query: 94  DGVLVRVPILKGDPIRLEKLVD----RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
              +   PI  G+P+   KL+      G G ++ ++P G RA T+ ++  + V G + P+
Sbjct: 84  IDRISIRPIGPGEPLTEAKLMPRDGAPGAGIMTYIIPDGHRAVTVAVNEVAGVAGFLSPH 143

Query: 150 DHVDVVMV----RSLSERKPTVTVVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQA 204
           + VDVV+      S         +VL N+ ++A     +  D + +V  T T++LTP  A
Sbjct: 144 NKVDVVLTTIPPGSNDPNATISKIVLQNVPILATGQITEQKDGKPVVVPTVTIDLTPEDA 203

Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           + LV A S   L ++LR I D     S  + +  V    +
Sbjct: 204 EKLVVASSKGSLQMLLRGIRDSALVESRGATIAKVLGAVR 243


>gi|13471033|ref|NP_102602.1| hypothetical protein mll0900 [Mesorhizobium loti MAFF303099]
 gi|14021777|dbj|BAB48388.1| mll0900 [Mesorhizobium loti MAFF303099]
          Length = 308

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 25/247 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN-------VLISKG 53
           M+   +  I ++ VF  ++   A   V        E  T + A  +        ++++K 
Sbjct: 1   MRGKAITMIGIAAVFGAISIFAADFWVKSQAKADAEEKTASIAAPVPPRIEFKTIVVAKA 60

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
            L  G  +    L  + +P++++  G    +            +V  PI   +P+ L KL
Sbjct: 61  PLRYGQELDRAKLIEIPWPQDSLPQGAFATIDGLLGEG---NRIVLSPIEVNEPVLLTKL 117

Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----------- 161
                   LS++L  G RA T+     + VGG + P D VDVV+ R              
Sbjct: 118 SGPNGRATLSNMLTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQG 177

Query: 162 --ERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
                 T  +V+++ +V+++    D  +    + ++ T+E+T   A+ +  A++V  LSL
Sbjct: 178 AAGSTVTSEIVVADAKVLSVGQGADERQTTPQITNSVTIEVTTEGAQKVALARTVGTLSL 237

Query: 219 VLRSIAD 225
            LRS ++
Sbjct: 238 SLRSASE 244


>gi|322419945|ref|YP_004199168.1| Flp pilus assembly protein CpaB [Geobacter sp. M18]
 gi|320126332|gb|ADW13892.1| Flp pilus assembly protein CpaB [Geobacter sp. M18]
          Length = 308

 Score =  139 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 110/218 (50%), Gaps = 13/218 (5%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
            +E+      +   ++++  D+ +G  ++   L+  ++P++++  G   DV      + L
Sbjct: 30  QKEMDMTKAVQPQTLVVAAADIPIGGTISEPQLKTTSWPKDSIPPGSAADV------KSL 83

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGN----GGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
            G +   PI  GD +  +KL  +      G ++ ++P G RA T+ ++  + V G I PN
Sbjct: 84  VGRVAIRPISNGDAVTEQKLKPKAGAAGSGFMTYIVPLGHRATTVAVNEVAGVAGFITPN 143

Query: 150 DHVDVVMVR--SLSERKPTVTVVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKA 206
           D +DVV+      S+++    ++L N+ V+A     +  + + +V  T TL+LTP  A+ 
Sbjct: 144 DRIDVVLTTQLPGSQKENISKIILQNVPVLATGQITEQKEGKPVVVPTVTLDLTPEDAEK 203

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           LV A S   L L+LR+IAD  P +++ + +  V     
Sbjct: 204 LVLAGSKGSLQLLLRNIADSAPLNAKGATIAKVLAGTP 241


>gi|83717368|ref|YP_440455.1| pilus assembly protein [Burkholderia thailandensis E264]
 gi|167617228|ref|ZP_02385859.1| pilus assembly protein [Burkholderia thailandensis Bt4]
 gi|257141103|ref|ZP_05589365.1| pilus assembly protein [Burkholderia thailandensis E264]
 gi|83651193|gb|ABC35257.1| pilus assembly protein [Burkholderia thailandensis E264]
          Length = 279

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 105/211 (49%), Gaps = 12/211 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  + +    V ++  D+ +G  + PN L  V +P  +V  G   D      ++ L+G +
Sbjct: 29  VQTSSSAVTPVAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKSLEGRV 82

Query: 98  VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           VR  + +G+P+   KL      GGLS+++  G RA T+ ++    V G   P ++VDV++
Sbjct: 83  VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGDRAITVRVNDVVGVAGFALPGNYVDVIV 142

Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211
                     ++    +VL  I V+A+   +  D+    V +  TLE+TP QA+ L  A+
Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLAR 202

Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
           SV  LSLVLR+  D +  ++E +    +  +
Sbjct: 203 SVGTLSLVLRNQVDKSALTTEGATKRTLLGQ 233


>gi|149915643|ref|ZP_01904169.1| CpaB family protein [Roseobacter sp. AzwK-3b]
 gi|149810535|gb|EDM70378.1| CpaB family protein [Roseobacter sp. AzwK-3b]
          Length = 290

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 106/258 (41%), Gaps = 14/258 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTE--EVITENPAKFINVLISKGDLAVG 58
           M+L   + +V+    A  A  +A   +  +  Q            + + VL++K  L  G
Sbjct: 1   MRLVFGLVLVLGLGLAGFAVYMAKSYIQGYQNQLALERAQRAPQIETVEVLVAKTPLKYG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117
             + P+ +  V FP++ + +G    +       E +   VR  +   + I   K+     
Sbjct: 61  QKLKPDAVRLVKFPKDALPEGVFMTMDALFPKGEQEPRAVRRAMEVNEAIMAVKVTAPGE 120

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----------KPTV 167
           + G+SS L +G RA  + + ++S V G ++P D VDV     +                 
Sbjct: 121 DAGISSQLAQGMRAFAIKVDVASGVSGFLRPGDRVDVYWTGQVRGGSDVRTEGNSMGDVT 180

Query: 168 TVVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            ++ + +++IA+D   D    + ++  T T+   P Q  AL  AQ+  +LSL L    + 
Sbjct: 181 KLIETGVQLIAVDQISDENTTQAIIARTVTVAARPQQVAALAQAQATGRLSLSLVGTDEE 240

Query: 227 NPSSSEDSDVWDVQEEGK 244
           + +   + D   +    +
Sbjct: 241 SVAEVIEVDQNRLLGLSR 258


>gi|167579113|ref|ZP_02371987.1| pilus assembly protein [Burkholderia thailandensis TXDOH]
          Length = 279

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 104/210 (49%), Gaps = 12/210 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  + +    V ++  D+ +G  + PN L  V +P  +V  G   D      ++ L+G +
Sbjct: 29  VQTSSSAVTPVAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKSLEGRV 82

Query: 98  VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           VR  + +G+P+   KL      GGLS+++  G RA T+ ++    V G   P ++VDV++
Sbjct: 83  VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGDRAITVRVNDVVGVAGFALPGNYVDVIV 142

Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211
                     ++    +VL  I V+A+   +  D+    V +  TLE+TP QA+ L  A+
Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLAR 202

Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
           SV  LSLVLR+  D +  ++E +    +  
Sbjct: 203 SVGTLSLVLRNQVDKSALTTEGATKRTLLG 232


>gi|319782174|ref|YP_004141650.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168062|gb|ADV11600.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 344

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 107/256 (41%), Gaps = 11/256 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   L+ IV++GVF ++A ++    ++       +       +   V+++   L  G  
Sbjct: 1   MRANTLIMIVLAGVFGVLAVVLVNIWLAGQRSAMAQTGV---VQGSTVVVAAMPLKFGDA 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           ++ + L  VA+P   V  G         A            I   +PI   K+   G   
Sbjct: 58  LSADKLREVAWPAGAVPAGAFKSTKDLLAGDGA--KQALQSIGVNEPILATKITGPGQRA 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175
            LS++L +G +A ++ ++    V G + P D VD+++           K  V V+L +++
Sbjct: 116 TLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDILLTRTARGDDGADKSFVDVLLQSMK 175

Query: 176 VIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+AID   D   +   V  + TLE +   A+ L  A    +LSL LR  A     ++E  
Sbjct: 176 VLAIDQVADESKDSPTVVKSVTLEASTRDAQKLTLAAGAGQLSLALRQAAASKGETTERV 235

Query: 235 DVWDVQEEGKEIQIIK 250
            + D+  E       +
Sbjct: 236 TLSDLTGETPADVAAR 251


>gi|170725114|ref|YP_001759140.1| Flp pilus assembly protein CpaB [Shewanella woodyi ATCC 51908]
 gi|169810461|gb|ACA85045.1| Flp pilus assembly protein CpaB [Shewanella woodyi ATCC 51908]
          Length = 298

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 100/273 (36%), Gaps = 21/273 (7%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
            + ++++ V   +A             +    ++++  K   V+++  +L  G +++   
Sbjct: 10  WVLLIIAIVLGSIAAWATKNYFITKEQELIAELSKDNIKMAQVVVATQELRKGDIISEAN 69

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
           +       + +    I     P    ++ G ++  P+  G P+    L        S +L
Sbjct: 70  MSVRKIQADTLPLDAIH----PKDFNQIVGQMLLEPMSPGRPLMGTYLPGHKAEQFSDIL 125

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSNIRVIAIDHN 182
            +G+RA T++I   ++  GM+ P+DH+D+++               ++L N+ V+A    
Sbjct: 126 KEGQRAVTINIDELNSTAGMLVPSDHIDLLLSFDEESGDIERKKLQLLLENVTVLATGRQ 185

Query: 183 IDSD---------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
                        +     +T TL L+   A  +  A+   K    LR+  +        
Sbjct: 186 SVDVNPELADTLYDNPNAYNTVTLALSVHDAARVTLAKEKGKFVTFLRNQTESLALDFIS 245

Query: 234 SDVWDVQEEGK-----EIQIIKAGVIVNKDGEG 261
                +  +       E+++I  G  +    + 
Sbjct: 246 LHEQQLFGQADDLLNQEVEMIVGGSGMKTTVQA 278


>gi|37680195|ref|NP_934804.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016]
 gi|37198942|dbj|BAC94775.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016]
          Length = 279

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 97/271 (35%), Gaps = 25/271 (9%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            + V    ++   +     +     Q              VL +   LA G  +    L 
Sbjct: 5   YMAVFAALSIALFLAGFVWLDTSQAQPPSQPLSTVEHKAKVLTTNRALAKGSFIERENLV 64

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLP 126
           W               +     ++++ G +    I     +  E L+       LS+L+ 
Sbjct: 65  WKEVSLAERESLGEVFLQPVFELEQIAGSVAVQFIPADSVLSPEMLLRPEQSDFLSALVK 124

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----------PTVTVVLSNIRV 176
            G RA ++++   +A  G+++P + VDV++       +            V  VL NI +
Sbjct: 125 PGMRAISIELDPMAAGLGLLRPGNKVDVLLTSQSEIDQDANGTPIYNNMAVETVLQNIHL 184

Query: 177 IAIDHNIDSDERVLV------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           +AI +     ++          ++ T E++   A+ LV A  + +LSLVLR   D    +
Sbjct: 185 LAIGNQYSPHQKPEKSAKSYDPTSVTFEVSLQDAEKLVLASKLGELSLVLRGNNDQTEVA 244

Query: 231 SED--------SDVWDVQEEGKEIQIIKAGV 253
           ++               Q+  + + +I+  V
Sbjct: 245 NKPLKWAKDISGAYDLEQQPTQSVTVIRGNV 275


>gi|167725246|ref|ZP_02408482.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           DM98]
          Length = 245

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  + +    V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +
Sbjct: 29  VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82

Query: 98  VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           VR  + +G+P+   KL      GGLS+++  G RA T+ ++    V G   P ++VDV++
Sbjct: 83  VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142

Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211
                     ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+
Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202

Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235
           SV  LSLVLR+  D +  S+  + 
Sbjct: 203 SVGTLSLVLRNQVDKDALSTGGAT 226


>gi|94497253|ref|ZP_01303825.1| Flp pilus assembly CpaB [Sphingomonas sp. SKA58]
 gi|94423358|gb|EAT08387.1| Flp pilus assembly CpaB [Sphingomonas sp. SKA58]
          Length = 337

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 118/260 (45%), Gaps = 17/260 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVGM 59
           M   +++ +V + + A+   ++A  ++S     +         A   +VL++   L VG 
Sbjct: 1   MDAKKIVLLVGALIIAVTTALLARNMLSSSSTPSVNAANMPVEADQPHVLVAVKALPVGT 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
           ++      +  +P++ V   +        A   L G ++R  I  G P+    LV  G+ 
Sbjct: 61  ILDAESFRFQPWPKDLVEQAYYLRGQADPA--RLAGSVIRTAITAGQPLTQGSLVKPGDR 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVLSN 173
           G L++ L  G RA T+ +S  ++V G + P D +D+V+ +S++             +L N
Sbjct: 119 GFLAAALAPGMRAVTVPVSAQTSVAGFVFPGDRIDLVLTQSVAGGGDGEPLKVSETILRN 178

Query: 174 IRVIAIDHNIDSDERVLVG-----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           +RV+A D  +D+            S  TLE+TP  A+ +  AQ+V  LS+ LRS+AD   
Sbjct: 179 LRVLATDQRMDALGPDGKPVVQTYSNVTLEVTPKIAEKIAVAQTVGSLSMSLRSMADTPS 238

Query: 229 ---SSSEDSDVWDVQEEGKE 245
              ++   +DV   +     
Sbjct: 239 DLDAAIAGADVDLPEGASPA 258


>gi|167566933|ref|ZP_02359849.1| putative pilus assembly protein CpaB [Burkholderia oklahomensis
           EO147]
          Length = 274

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 12/204 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  + +    V ++  D+ +G  + PN L  V +P  +V  G   DV      + L+G +
Sbjct: 21  VQTSSSAVTPVAVAAIDVNLGEPLVPNQLRVVNWPTASVPPGAFTDV------KSLEGRV 74

Query: 98  VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           VR  + +G+P+   KL      GGLS+++  G RA T+ ++    V G   P ++VDV++
Sbjct: 75  VRTSLARGEPVLGSKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 134

Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211
                     ++    +VL  I V+A+   +  D+    V +  TLE+TP QA+ L  A+
Sbjct: 135 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLAR 194

Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235
           SV  LSLVLR+  D +  ++  + 
Sbjct: 195 SVGTLSLVLRNQVDKDALNTGGAT 218


>gi|167851181|ref|ZP_02476689.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           B7210]
          Length = 253

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  + +    V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +
Sbjct: 29  VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82

Query: 98  VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           VR  + +G+P+   KL      GGLS+++  G RA T+ ++    V G   P ++VDV++
Sbjct: 83  VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142

Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211
                     ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+
Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202

Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235
           SV  LSLVLR+  D +  S+  + 
Sbjct: 203 SVGTLSLVLRNQVDKDTLSTGGAT 226


>gi|167821373|ref|ZP_02453053.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 91]
          Length = 251

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  + +    V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +
Sbjct: 29  VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82

Query: 98  VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           VR  + +G+P+   KL      GGLS+++  G RA T+ ++    V G   P ++VDV++
Sbjct: 83  VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142

Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211
                     ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+
Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202

Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235
           SV  LSLVLR+  D +  S+  + 
Sbjct: 203 SVGTLSLVLRNQVDKDALSTGGAT 226


>gi|149178506|ref|ZP_01857094.1| pilus assembly transmembrane protein [Planctomyces maris DSM 8797]
 gi|148842621|gb|EDL56996.1| pilus assembly transmembrane protein [Planctomyces maris DSM 8797]
          Length = 324

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 91/264 (34%), Gaps = 20/264 (7%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL-ISKGDLAVGMVVTPNILEW 68
           + + +  L A     + +                    VL I+  DL  G  ++ + +  
Sbjct: 5   IFAILLGLGAAYTVRQFLHEKPKPFVLAEDPPAGPKKIVLPIASRDLVPGQKLSLDDISL 64

Query: 69  VAFPEENVFDGFIDDVH---QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSL 124
           +    E +   +  D     +    Q + G  ++  I  G P     L   G G G+S +
Sbjct: 65  LQISPELLSKRYDADSEGKQRIMMTQYIAGRTLKTAIKAGQPFHTIDLFANGMGPGISEI 124

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI 183
           L  G RA T+ I     V G  +P   VDV+     ++  P  T  +L  +RV+A+    
Sbjct: 125 LEPGNRAVTVAIHKIGNVAGFSRPGTIVDVLFRSKETDGIPETTITLLEKVRVLAVGDQA 184

Query: 184 DSDERVLVGS----TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
               +V  G       TLE++P Q K L   +    LSL LR   +     S       +
Sbjct: 185 VPGHKVGEGGGMDHPVTLEVSPEQGKVLKVVEDHGILSLALRHPDENTEVVSAGRASDRL 244

Query: 240 QEEG----------KEIQIIKAGV 253
                           + I + G 
Sbjct: 245 TLSNILGFMPNQRVSSMDIYRGGS 268


>gi|23016178|ref|ZP_00055937.1| COG3745: Flp pilus assembly protein CpaB [Magnetospirillum
           magnetotacticum MS-1]
          Length = 296

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 117/282 (41%), Gaps = 32/282 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           ++ + A   G++A   +     +  +         + VL+   D+  G  ++ + L + +
Sbjct: 1   MASLAAGGTGMLANAWLDRQESRHAKADDA---PVVEVLVINRDVPSGAALSVDDLRYES 57

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGK 129
           +P        +      +A     G++ R  + +G+P+         + G L+ LL  GK
Sbjct: 58  WPRSAATARLVVRRPGEDAKAAFVGMIARRALTEGEPVSAATTFKPDSSGVLAGLLGPGK 117

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----------------------V 167
           RA ++ I+  +AV G I P D VDVVM+  L + +                         
Sbjct: 118 RAISITITNPTAVSGFITPGDRVDVVMLTDLKKIEDAQGRESKQEEGRFGGETLLVRFGA 177

Query: 168 TVVLSNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
             VLS+IRV+AID  I    D   + G TATLE+TP QA+ LV A+++  L L LR    
Sbjct: 178 ETVLSDIRVLAIDQQITRGRDGAAIQGKTATLEVTPKQAEILVLAETMGMLQLSLRPQQG 237

Query: 226 LNPS----SSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEGIS 263
             P+      E  D     E GK +Q         K  +  S
Sbjct: 238 DGPAVAPQPGEMLDFTADLEAGKALQASVGFAAKKKGTKASS 279


>gi|303241713|ref|ZP_07328210.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2]
 gi|302590714|gb|EFL60465.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2]
          Length = 250

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 114/261 (43%), Gaps = 23/261 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+      IV+S + AL    +    +       +  +  +  ++I+V ++   +A    
Sbjct: 1   MESVNKRVIVISIILALFTTALVFLYI------KDATVKPDVVEYIDVYVAAKTMAAKYE 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   ++     +E +    +          ++ G  ++  +++G+ I   +LV   N  
Sbjct: 55  ITEADIKKTRVTKEYLNTDAVLVQA------DIIGKRLKESVIEGEQILRSRLVQEDNFT 108

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---------PTVTVVL 171
           L+  +P+G RA +++++  + V  +I+P D VD++    L ++               V+
Sbjct: 109 LAYNVPEGMRAISVNVNEQTEVANLIRPGDFVDIIASFPLEKQDIGQNTIINLGISQTVI 168

Query: 172 SNIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
            N++V+A+     I+ D+++ +  T TL ++P  A+ L        + + LRSI D    
Sbjct: 169 QNVQVLALGQDLAIEEDKKLELPKTVTLAVSPKDAEKLTFVTEFGTMRMTLRSIGDDKII 228

Query: 230 SSEDSDVWDVQEEGKEIQIIK 250
           S + +   DV  +   I + K
Sbjct: 229 SGDGTIKDDVMGDKGVIIVPK 249


>gi|27365650|ref|NP_761178.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6]
 gi|320156052|ref|YP_004188431.1| flp pilus assembly protein CpaB [Vibrio vulnificus MO6-24/O]
 gi|27361798|gb|AAO10705.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6]
 gi|319931364|gb|ADV86228.1| flp pilus assembly protein CpaB [Vibrio vulnificus MO6-24/O]
          Length = 279

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 96/271 (35%), Gaps = 25/271 (9%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            + V    ++   +     +     Q              VL +   LA G  +    L 
Sbjct: 5   YMAVFAALSIALFLAGFVWLDTSQAQPPSQPLSTVEHKAKVLTTNRALAKGSFIERESLV 64

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLP 126
           W               +     + ++ G +    I     +  E L+       LS+L+ 
Sbjct: 65  WKEVSLAERESLGEVFLQPVFELDQIAGSVAVQFIPADSVLSPEMLLRPEQSDFLSALVK 124

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----------PTVTVVLSNIRV 176
            G RA ++++   +A  G+++P + VDV++       +            V  VL NI +
Sbjct: 125 PGMRAISIELDPMAAGLGLLRPGNKVDVLLTSQSEIDQDANGTPIYNNMAVETVLQNIHL 184

Query: 177 IAIDHNIDSDERVLV------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           +AI +     ++          ++ T E++   A+ LV A  + +LSLVLR   D    +
Sbjct: 185 LAIGNQYSPHQKPEKSAKSYDPTSVTFEVSLQDAEKLVLASKLGELSLVLRGNNDQTEVA 244

Query: 231 SED--------SDVWDVQEEGKEIQIIKAGV 253
           ++               Q+  + + +I+  V
Sbjct: 245 NKPLKWAKDISGAYDLEQQPTQSVTVIRGNV 275


>gi|302391028|ref|YP_003826848.1| Flp pilus assembly protein CpaB [Acetohalobium arabaticum DSM 5501]
 gi|302203105|gb|ADL11783.1| Flp pilus assembly protein CpaB [Acetohalobium arabaticum DSM 5501]
          Length = 278

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 109/250 (43%), Gaps = 18/250 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M     + IV++ +  L+       ++     +             +V+++K ++     
Sbjct: 1   MNFK--VVIVIAVILGLITSGAVYFMMDNMQQEAV-----KEQPKASVVVAKQNIEPREQ 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118
           +T + ++    P+E V    +       ++ +         I+ G+ +   +L+ +   +
Sbjct: 54  ITRSKVQLKQVPQETVHSQAVT------SISQAVEKFALKDIISGEQLLKPRLLGKEEVS 107

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-LSERKPTVTVVLSNIRVI 177
            GL+  L   KRA T+ ++  S V G + P D+VDVV V S    ++     VL  ++V+
Sbjct: 108 SGLAFNLADDKRAVTVPVTEVSGVAGFLTPGDYVDVVSVFSTYEAQQTVAKTVLQKVKVL 167

Query: 178 AIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+  ++  + D++  V  + TL +   +A+ LV A    ++ LVLRS  + + S S    
Sbjct: 168 AVAQDMVRERDQKPKVTKSVTLGVGLAEAEKLVLADRKGEIRLVLRSAQNESFSMSNGVK 227

Query: 236 VWDVQEEGKE 245
             ++    +E
Sbjct: 228 FEELVGNLEE 237


>gi|225174960|ref|ZP_03728957.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1]
 gi|225169600|gb|EEG78397.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1]
          Length = 238

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 94/235 (40%), Gaps = 17/235 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R + +  + +  LV  +     +   +               NV+++   +     
Sbjct: 1   MKANRKLLLA-AVIVGLVTVVALNSYIRSLNTPAL-----ASIPHSNVVVASSTIPAHTR 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +T  +L+ V+ P + V    +       ++ +  G + R  I++G+ +   ++V      
Sbjct: 55  ITAEMLDVVSIPNDAVHPEALR------SVDDAAGGISRTEIVRGEQVIDARVVTEDRRA 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVI 177
            LS  +P+G RA ++ +   + V G I   D++DV++    +E         V  N+ V+
Sbjct: 109 TLSYRVPEGMRAISIPVGEVTGVAGYISAGDNIDVLITYDDTEIHEGAITYTVFQNVNVL 168

Query: 178 AIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           A   N     DE   V  T TL +T  QA+ L  A       L LRS  D +   
Sbjct: 169 ATGPNTREKDDEEQEVVGTVTLSVTAAQAEVLAYALLKGNYHLTLRSPLDEDEVE 223


>gi|253701799|ref|YP_003022988.1| Flp pilus assembly protein CpaB [Geobacter sp. M21]
 gi|251776649|gb|ACT19230.1| Flp pilus assembly protein CpaB [Geobacter sp. M21]
          Length = 291

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 110/218 (50%), Gaps = 13/218 (5%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
            +EV +    +   ++++  D+ +G  +TP  L+  ++P++++  G   D+      + +
Sbjct: 30  QQEVKSAKAIQPQRIVVAAADIPIGTAITPAQLKVTSWPKDSIPPGSARDI------EAV 83

Query: 94  DGVLVRVPILKGDPIRLEKL----VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
              +   PI  GD +   KL       G G ++ ++P+G RA T+ ++  + V G + P+
Sbjct: 84  ANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLTPS 143

Query: 150 DHVDVVMVR--SLSERKPTVTVVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKA 206
           D VDV++      +E++    +VL N+ ++A     D  + + +V  T TL+L P  A+ 
Sbjct: 144 DRVDVIVTTPLPGNEKENISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDAEK 203

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           LV + S   L L+LR+I+D++   S  + +  V    +
Sbjct: 204 LVLSASKGSLQLLLRNISDISHVDSRGATIGKVLYGSE 241


>gi|147677784|ref|YP_001211999.1| flp pilus assembly protein CpaB [Pelotomaculum thermopropionicum
           SI]
 gi|146273881|dbj|BAF59630.1| flp pilus assembly protein CpaB [Pelotomaculum thermopropionicum
           SI]
          Length = 242

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 97/242 (40%), Gaps = 27/242 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++ + V    A   G               +        F  V +++  +     
Sbjct: 1   MKNRLILILAVIVGLAAAGGTYVYL-------DNLKKSYVISGDFTRVAVARQRITARTR 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +T  ++E    P + + +          + +E+ G + +  IL G+ I  ++L    +  
Sbjct: 54  ITAQMIELKDIPAKYINELA------AVSPEEIVGKIAKSEILPGEQILRDRLAQGSSAT 107

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVVLSN 173
            GL+ +L  GKRA T+ ++  S + G+IKP D VDVV           E+    ++++ +
Sbjct: 108 DGLAFMLQPGKRAVTVAVNEVSGLAGLIKPGDRVDVVGTFDLQGAPGQEKSSITSILIQD 167

Query: 174 IRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           + V++ D           + ++     T TL +TP QA+ LV       + L+LR   D 
Sbjct: 168 VDVLSTDQATIPLQENGQNGKKEAPARTVTLSVTPEQAQPLVLCSEKGTIRLILRPATDH 227

Query: 227 NP 228
             
Sbjct: 228 EI 229


>gi|284048527|ref|YP_003398866.1| Flp pilus assembly protein CpaB [Acidaminococcus fermentans DSM
           20731]
 gi|283952748|gb|ADB47551.1| Flp pilus assembly protein CpaB [Acidaminococcus fermentans DSM
           20731]
          Length = 339

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 98/272 (36%), Gaps = 39/272 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +LM +  S   A+   +  +        +   V   N    + V+ +  D+A   V
Sbjct: 27  MSPRKLMLLCGSAALAVFLLLYVILSALFPDQKPGNVAAGN----VTVVEAARDIAPQTV 82

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T  +L+ V  P   V  G + D       ++  G    + +  GD +   KL     GG
Sbjct: 83  LTEEMLKTVEVPANLVPAGALTD------KKQALGKKTGIDLFAGDILTERKLTS-HGGG 135

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
              ++P G RA +  ++  + V G  KP D VD+++V            +L ++ ++A++
Sbjct: 136 FVGMIPDGMRAVSFGVNDVTGVSGFAKPGDKVDILLVTDKEGNGIVSKTLLKDVLILAVN 195

Query: 181 HNID---------------------------SDERVLVGSTATLELTPMQAKALVAAQSV 213
            + D                           S   +   S  T+ LTP  A  L+ +  +
Sbjct: 196 KSSDRPQGTTQTSGSDKKTLTSGSQPAGNSGSTGSMGTPSVVTVALTPYDAAKLIGSSRI 255

Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245
            +L ++LR  AD +                  
Sbjct: 256 GQLQMMLR-PADGSTDDKSIGYYVIPLPGNTA 286


>gi|319943381|ref|ZP_08017663.1| SAF domain protein [Lautropia mirabilis ATCC 51599]
 gi|319743196|gb|EFV95601.1| SAF domain protein [Lautropia mirabilis ATCC 51599]
          Length = 339

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 102/252 (40%), Gaps = 15/252 (5%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   L+ +  + +   VA     R V+       E +     + ++V+++   L  G +V
Sbjct: 11  RHRNLLLMSAAMLCGGVAIYAGSRYVNEQVQAERERLAPVAQQMVDVVVANATLDKGEIV 70

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           +   +   + P E V    +     P     L G  + +P+  G+ +    +        
Sbjct: 71  SGETMAIRSVPAEYVSSSVVT----PEQFDALVGQRLLLPMRPGEMLSTAAVSSAEQLVF 126

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-------LSERKPTVTVVLSNI 174
           SS +  G RA T+ +   +++ GM++P D +D+++                    +L N+
Sbjct: 127 SSRVKPGIRALTISVDEINSISGMLQPGDRIDLLLTARPPSASGHGEAEHDATVPLLQNL 186

Query: 175 RVIAIDHNIDSD----ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
            V+A    +             S+ T+E+TP QA+ L+ AQ   +L+ VLR+  D  P  
Sbjct: 187 LVMATGRQVRPGANDNGDDRSFSSVTVEVTPSQAQRLIVAQRAGRLTAVLRNPDDGMPMD 246

Query: 231 SEDSDVWDVQEE 242
           +   D+  +  +
Sbjct: 247 AAAVDLRSLFPQ 258


>gi|167908128|ref|ZP_02495333.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           NCTC 13177]
          Length = 256

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 12/204 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  + +    V ++  D+++G  + PN L  V +P  +V  G   D      ++ L+G +
Sbjct: 29  VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82

Query: 98  VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
            R  + +G+P+   KL      GGLS+++  G RA T+ ++    V G   P ++VDV++
Sbjct: 83  ARTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142

Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211
                     ++    +VL  I V+A+   +  D+    V +  TLE++P QA+ L  A+
Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202

Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235
           SV  LSLVLR+  D +  S+  + 
Sbjct: 203 SVGTLSLVLRNQVDKDALSTGGAT 226


>gi|197106488|ref|YP_002131865.1| Flp pilus assembly protein CpaB [Phenylobacterium zucineum HLK1]
 gi|196479908|gb|ACG79436.1| Flp pilus assembly protein CpaB [Phenylobacterium zucineum HLK1]
          Length = 310

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 7/257 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M++  ++ +  S V  L A ++A  ++ P     +       A  + V+++  ++  G  
Sbjct: 1   MRVVTIVSLAASAVLGLGALVVAKTVL-PGAGAAKGAAVVQEAPGVPVVVAAREIKYGDK 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           + P +L  V  P   V  G    V Q  +  +    +    +   +P+   K+   G+  
Sbjct: 60  LVPGMLTIVNAPAGLVPQGAFQTVDQVLSADKGGPPVALTRLAAREPVLPTKISGPGSRP 119

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV----MVRSLSERKPTVTVVLSNIR 175
            +S+ + +G RA T+ +  SS VGG   P D VDVV    +  S  +R     VV+ N R
Sbjct: 120 TVSAEVGEGMRAYTLKVDASSGVGGHALPGDRVDVVLLRDLTPSGPDRNFISYVVVQNAR 179

Query: 176 VIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           V+ +D N D   E+    STATLE++  +++ L  A ++  LSL LR   +   + +   
Sbjct: 180 VLGVDLNADPTSEKPATPSTATLEVSVEESQKLAIAATLGTLSLALRRSGEAEIADAGPL 239

Query: 235 DVWDVQEEGKEIQIIKA 251
              D    G     ++A
Sbjct: 240 RTGDFLVGGGGRGPVRA 256


>gi|323700358|ref|ZP_08112270.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. ND132]
 gi|323460290|gb|EGB16155.1| Flp pilus assembly protein CpaB [Desulfovibrio desulfuricans ND132]
          Length = 273

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 111/247 (44%), Gaps = 15/247 (6%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
             L+ I +S   A++AG+I  +  +         + EN    +    +K DL  G+ +T 
Sbjct: 6   RALVQITLSLFLAVIAGVIIFKWTNGVKQAAPTAVVENTVPVVV---AKTDLGRGVKLTE 62

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGL 121
           ++LE   F +++   G   +V      ++++G ++   +  GD +   KL D+    GG+
Sbjct: 63  DMLEIRKFTQDSRPSGAFAEV------KQVEGRVLNQTVGMGDALTPLKLADKSIMGGGV 116

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-LSERKPTVTVVLSNIRVIAID 180
           S+L+  GKRA  +  +    + G ++P D VDV++  +     KP   +VL  I+VIA  
Sbjct: 117 SALITPGKRAMAVKGNEVMGLSGFVRPGDRVDVIVSLTVGRNEKPVTKLVLEQIKVIATG 176

Query: 181 HNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
             +         ++    TLELTP +++ L  A +   L   LR+  D     +  + V 
Sbjct: 177 TQLTPPNEEGKVASVGVYTLELTPAESERLALASTQGTLHFALRNEQDNADVRTIGTTVP 236

Query: 238 DVQEEGK 244
                 +
Sbjct: 237 QTLAALR 243


>gi|261856885|ref|YP_003264168.1| Flp pilus assembly protein CpaB [Halothiobacillus neapolitanus c2]
 gi|261837354|gb|ACX97121.1| Flp pilus assembly protein CpaB [Halothiobacillus neapolitanus c2]
          Length = 258

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 113/262 (43%), Gaps = 18/262 (6%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
               + + V+ +   +A ++A++ +  +        T  P K   V++   +L VG V++
Sbjct: 5   NRNFLYVAVAVLLGGLASVLAVKYI--NQQVATRTHTAAPQKMRTVVVPVHNLKVGDVLS 62

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L     P   V    +     P+  +   G ++  P+ +G PI     ++      S
Sbjct: 63  AKDLATRDIPVAYVPADALT----PDDYESHLGQMLTTPLAQGAPISA-MAMEPIANHFS 117

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH- 181
            ++   + A T+D+S ++++ G+I P DH+D++++ S + +      +LS++ V+A    
Sbjct: 118 DIIKPDRVAYTIDVSETNSISGLIVPGDHIDILLLLSKNSKDDI-RPLLSDVLVLATGKH 176

Query: 182 ----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
                 D  E     S  TLELTP  A+ +  A+ + +L ++LRS     P +       
Sbjct: 177 AKGVRSDGTEGNQGYSNLTLELTPKNAQRIGIAKKMGQLLVMLRSPDTKFPPNLGLLTAS 236

Query: 238 DVQEEGKE-----IQIIKAGVI 254
           D+   G       +Q I  G  
Sbjct: 237 DLLGAGPRAHGGGVQFIIGGRQ 258


>gi|220922531|ref|YP_002497833.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
 gi|219947138|gb|ACL57530.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS
           2060]
          Length = 307

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 12/245 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+L   + +V++      A  +A   +          +   P     ++++   L  G  
Sbjct: 1   MRLGSTLTLVLALALGGSAAFLARSYLMSVSS-----VGPAPLPAHTIVVATQPLPFGTQ 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +TP     + +P E   +G      +    +     +V   I + + +   K+   G   
Sbjct: 56  LTPENTTEIDWPSETRLEGSFATRDELLRGER---RVVLSSIARNEVVLAGKITGPGQRA 112

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVI 177
            LS+L+ +G RA  + +     V G I PND VDVV+ R    R+      ++L N++V+
Sbjct: 113 TLSTLIEEGMRAVAVRVDDVRGVAGFILPNDRVDVVLTRDEEARESKGFADILLQNVKVL 172

Query: 178 AIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           AID    D  ++  V    TLEL P+QA+ ++ AQ V +LSL+L    +    +     V
Sbjct: 173 AIDQLANDHADKPTVARAVTLELNPVQAQKIILAQGVGRLSLILNKAGNATSDTPSRVTV 232

Query: 237 WDVQE 241
            D+  
Sbjct: 233 ADLGR 237


>gi|297618080|ref|YP_003703239.1| Flp pilus assembly protein CpaB [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145917|gb|ADI02674.1| Flp pilus assembly protein CpaB [Syntrophothermus lipocalidus DSM
           12680]
          Length = 242

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 111/246 (45%), Gaps = 24/246 (9%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           +++ +F L A ++A R ++    + E      P   + V+++  D+    V+T   ++  
Sbjct: 9   ILAILFGLAATVLAYRYIAGVKARYE------PKNLVQVVVAATDIPKNSVITREKVKLE 62

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG--LSSLLPK 127
             P +      + D      + E+ G +    I+ G+ I   K++        L+  +P 
Sbjct: 63  LVPAQFAHPAAVRD------LDEVVGRVAASYIVAGEEILSAKIISDAEKTNKLAYAVPM 116

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV---VLSNIRVIAIDHNID 184
           GKRA ++ ++  S V G+++P D VDV+    L+  +  V V   +L ++ V+A+D N+D
Sbjct: 117 GKRAVSVPVNAVSGVSGLVRPGDRVDVIATVELASGQENVAVTSFILQDVEVLAVDQNLD 176

Query: 185 SDER-------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
             +            +T TL +TP +A+ LV A     + L LR+ AD +        + 
Sbjct: 177 ETKPVPAAKEEAAPATTVTLAVTPEEARPLVLASEQGSIRLALRAPADHDRVMLPPVRLV 236

Query: 238 DVQEEG 243
           D+    
Sbjct: 237 DIVGGQ 242


>gi|261251599|ref|ZP_05944173.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
 gi|260938472|gb|EEX94460.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
          Length = 279

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 99/245 (40%), Gaps = 25/245 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RLM + +      +A ++             E        F  VL++K  + VG  
Sbjct: 1   MTAKRLMLLSLILSAVGIAILLL-----NPSKPQSEQRQAAAEVFKRVLVAKQGVVVGQP 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
            T N+ +W +  E+ + +       +  +  +L   +    I  G  +  +      +G 
Sbjct: 56  YTLNMFQWKSVSEQELNNYLDFISEEEFSRLDLKPGIAHTAIQSGQVMSSDDFETPASGI 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVV 170
            ++  +  G RA ++ +   +A  G ++P D VD++++ S  E             VT +
Sbjct: 116 SMAFKVQSGHRAISVPVDAVTANSGFVQPGDKVDILLLGSQVEELKKYDNQVAGLYVTTI 175

Query: 171 LSNIRVIAIDHNIDSDE----------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
             ++RV+A +   D  +           +   S+ +LE+TP QA  +V A  + KL+L L
Sbjct: 176 AIDVRVLAFNQYADPQDFQKNRSAYGADIPDNSSVSLEVTPEQATQIVLANQIGKLTLSL 235

Query: 221 RSIAD 225
           R   +
Sbjct: 236 RGAGE 240


>gi|260778163|ref|ZP_05887056.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606176|gb|EEX32461.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 279

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 25/247 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RLM + +      +  ++             +   +    F  VL+S  D+ VG V
Sbjct: 1   MTAKRLMMLSILLSSVGIGLLLL-----GQDNSEHQTKEQPEQVFQRVLVSGQDIGVGDV 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
            TPN+  W +  EE + D              L   +  + I +G  I    L+    G 
Sbjct: 56  YTPNMFRWQSLSEEQLSDYVDYVTEDEITSINLASGIAHIAIKQGQVIAAADLIPPQGGA 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVV 170
            L+  +  G RA ++ +   +A  G ++P D VD++++ S                V+ +
Sbjct: 116 SLALKVRAGYRAVSVPVDQVTANSGFVQPGDKVDILLLGSKVSELKKYDNVVEGLYVSTI 175

Query: 171 LSNIRVIAIDHNIDSDE----------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            +N+R++A ++   S+           ++   S+ +LE+TP QA  +V A  + +L+L L
Sbjct: 176 ATNVRILAFNNLSSSEGFQEKRHDYGAKIPDNSSVSLEVTPEQATQIVLANQLGRLTLSL 235

Query: 221 RSIADLN 227
           R   + +
Sbjct: 236 RGSGETD 242


>gi|86159250|ref|YP_466035.1| Flp pilus assembly CpaB [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775761|gb|ABC82598.1| Flp pilus assembly CpaB [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 307

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 16/214 (7%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
            E            V+++  DL     +  ++L  V +P  NV +G   D  +      L
Sbjct: 48  VETRTAAARVSTTPVVVATIDLPEATTLRADVLTVVQWPSANVPEGAASDPAK------L 101

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
              +VR  ++KG+P+   +L     G GL+++LP G RAA + ++    V G I P D V
Sbjct: 102 VDRVVRARVIKGEPVIESRLAAADAGHGLAAILPPGMRAAAVRVNDVVGVSGFIHPGDSV 161

Query: 153 DVVMVRSLSERK-----PTVTVVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPMQ 203
           DV++V                ++L N+ V+A+   ++ +    E+ L  + ATL +   Q
Sbjct: 162 DVIVVMRPESNGNSNPAYFSKIILQNVPVLAVGKELERNERSLEKSLPATVATLMVDSEQ 221

Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           ++ L  AQ+   + L LRS  D     +   +  
Sbjct: 222 SEKLALAQTKGNILLTLRSGIDRELVDTTGVNPA 255


>gi|197117447|ref|YP_002137874.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem]
 gi|197086807|gb|ACH38078.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem]
          Length = 291

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 109/217 (50%), Gaps = 13/217 (5%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
            +EV +   A+   ++++  D+ +G  +TP  L+  ++P++++  G          ++ +
Sbjct: 30  QQEVKSAKAAQPQRIVVAAVDIPIGTAITPAQLKVASWPKDSIPPGSAR------GIEAV 83

Query: 94  DGVLVRVPILKGDPIRLEKL----VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
              +   PI  GD +   KL       G G ++ ++P+G RA T+ ++  + V G + P+
Sbjct: 84  ANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLTPS 143

Query: 150 DHVDVVMVR--SLSERKPTVTVVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKA 206
           D VDV++      +E++    +VL N+ ++A     D  + + +V  T TL+L P  A+ 
Sbjct: 144 DRVDVIVTTPVPGNEKENISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDAEK 203

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243
           LV + S   L L+LR+I+D +   S+ + +  V    
Sbjct: 204 LVLSASKGSLQLLLRNISDSSHVDSKGATIGKVLYGS 240


>gi|260463893|ref|ZP_05812089.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
 gi|259030268|gb|EEW31548.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum
           WSM2075]
          Length = 299

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 105/266 (39%), Gaps = 23/266 (8%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTE-----EVITENPAKFINVLISKGDLAVGMVVT 62
            I ++ VF  ++   A   V       E             +F  ++++   L  GM + 
Sbjct: 1   MIGIAAVFGAISIFAADFWVKSQADAQEKTASIAAPAPPKIEFKTIVVANAPLRYGMELD 60

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121
              L  + +P++++  G    +          G +V  PI   +P+ L KL        L
Sbjct: 61  RTKLIEIPWPQDSLPQGAFATIDGLLGEG---GRVVLSPIEVNEPVLLTKLSGPNGRATL 117

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-------------ERKPTVT 168
           S++L  G RA T+     + VGG + P D VDVV+ R                    T  
Sbjct: 118 SNMLTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQGAAGSTITSE 177

Query: 169 VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           +V+++ +V+++    D  +    + ++ TLE+T   A+ +  A++V  LSL LRS ++  
Sbjct: 178 IVVADAKVLSVGQGADERQTAPQIANSVTLEVTTEGAQKVALARTVGTLSLSLRSASEGG 237

Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGV 253
              +  + +              AG 
Sbjct: 238 DGKNGVTTISSFGGSVASKAQATAGS 263


>gi|300856049|ref|YP_003781033.1| putative cell wall-binding protein [Clostridium ljungdahlii DSM
           13528]
 gi|300436164|gb|ADK15931.1| putative cell wall binding protein [Clostridium ljungdahlii DSM
           13528]
          Length = 321

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 98/225 (43%), Gaps = 24/225 (10%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
           +   AK   +L++   ++ G ++   +++ +  P   +FD +I D  +      + G   
Sbjct: 33  SSEAAKKTTILVAAETISPGTLIDKKMIKKIQVPYNPIFDNYIKDSSK------IAGKYT 86

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
              I K +   ++KL+++G   L+  +    RA ++ ++  S V G++KP D+VD+++  
Sbjct: 87  TETISKNEGFHIDKLLEKGGDELNLKIDNDYRAISISVTGDSGVSGLLKPKDYVDIIVYT 146

Query: 159 SLSERK------PTVTVVLSNIRVIAIDHNIDSDERVLVGS------------TATLELT 200
           S               +VL NI+V+A+D  I  D +    +              TL + 
Sbjct: 147 SEKRDGIKVVRPDEAKIVLQNIQVLAVDKQISRDNKESNSNKSSDNGKAPTNFLVTLSVK 206

Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245
               + +V AQS+  + L LR + D   + +  +   D+     E
Sbjct: 207 VSDLEKVVLAQSIGSIKLALRPLKDEITTQTNGTTWEDMSVNTDE 251


>gi|84685163|ref|ZP_01013062.1| pilus assembly protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84666895|gb|EAQ13366.1| pilus assembly protein [Rhodobacterales bacterium HTCC2654]
          Length = 275

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 8/242 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   L+        A+    +A R++           T    + + ++ +  D+  G  
Sbjct: 1   MRKAPLILAASGIALAVGCAAVAQRVLGGSEQAAP---TVAVPETVVLIAAARDIRFGEP 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +  + L    +P + V  G  D        +          I +GD +    + + G   
Sbjct: 58  IRRDDLVPQTWPADLVPTGAFDSATVLLGAEGTAPRRATQTIREGDVVLAANVSEFGASV 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            + S L  G RA  + ++  +AVGG + P DHVD+V+            V+L + RV+A+
Sbjct: 118 TIGSTLSPGTRAVAIRVNADTAVGGFVSPGDHVDIVLT-QGRGDTLRTGVILQDTRVLAV 176

Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
           D + ++        T T+E+ P  ++ LV AQ   +LSL+LR+  D     + + D   +
Sbjct: 177 DQDTEARG-ARKARTITVEVAPRDSQRLVLAQEAGQLSLILRN--DDAIGDTGEMDQITL 233

Query: 240 QE 241
           ++
Sbjct: 234 RD 235


>gi|153006806|ref|YP_001381131.1| SAF domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030379|gb|ABS28147.1| SAF domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 322

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 14/219 (6%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E   +        V+++  D+    ++    L  + +P  +   G   D         L 
Sbjct: 52  EAKASAAKVPTTKVVVASVDIPSATMLRTESLSVIDWPSASTPQGTFADPA------TLV 105

Query: 95  GVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
             +V   + KG+PI   +L       GL+++LP G RA  + ++    V G + P D VD
Sbjct: 106 ERVVTSAVSKGEPILESRLAAPGTAAGLAAVLPAGMRAVAVRVNDVVGVAGFLHPGDAVD 165

Query: 154 VVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPMQAKA 206
           V++  S S      P   ++L N+RV+A+   ++      ++ +  + ATL +   Q++ 
Sbjct: 166 VIVTMSPSGGGGQAPMSKIILQNVRVLAVGKEVERADRAFDKAIPATVATLMVDSEQSEK 225

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245
           L  A +  ++ L LRS AD    ++       +   G+E
Sbjct: 226 LALAATKGQILLSLRSGADEEMLATPGITPPVLLASGRE 264


>gi|237653357|ref|YP_002889671.1| Flp pilus assembly protein CpaB [Thauera sp. MZ1T]
 gi|237624604|gb|ACR01294.1| Flp pilus assembly protein CpaB [Thauera sp. MZ1T]
          Length = 286

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 113/253 (44%), Gaps = 15/253 (5%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              L+ + V+ +F L A  +A R +     +  E+      +  + +++K DLAVG  +T
Sbjct: 6   PRNLIILAVASLFGLGAAWLAARYL---EERATEIELRQQGQMGHAVVAKTDLAVGTPLT 62

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            +++     P E +    I     P   +   G ++  P   G+P+   +L +R    LS
Sbjct: 63  RDLVAVREVPVEWLHSSAIT----PEQFERAAGAVLAQPARGGEPLVWSQLEERRPATLS 118

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
           + L  G+RA T+ +  +S++ G+++P D +D++              +L  +RV+A    
Sbjct: 119 AQLAPGRRATTIPVDETSSLSGLLRPGDRIDLLATVQRD-HHHLTLPLLQGVRVLATGSR 177

Query: 183 IDSDERVLVG-------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
               E    G        T TL+L+  +A  LVAA+++A+L+ VLR   D   +  + +D
Sbjct: 178 TRPGEDDGAGDLLGGSFGTLTLDLSEEEATRLVAARALARLTAVLRHPRDTRTAPLQRTD 237

Query: 236 VWDVQEEGKEIQI 248
              +       + 
Sbjct: 238 ALALLGLAPPARE 250


>gi|260892925|ref|YP_003239022.1| Flp pilus assembly protein CpaB [Ammonifex degensii KC4]
 gi|260865066|gb|ACX52172.1| Flp pilus assembly protein CpaB [Ammonifex degensii KC4]
          Length = 233

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 20/235 (8%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            A+ A +     +               A +++V+++  D+ V   +TP++L+    P  
Sbjct: 13  CAVGAAVGTYFYLERLKATY-----RQKAHYVSVVVAAQDIPVRTSLTPSLLKLQDLPSS 67

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG--GLSSLLPKGKRAA 132
            V    +  +      ++  G +  VP+++G+ +   KL    +    L+  L  G+RA 
Sbjct: 68  CVHPLAVRRI------EDAVGRVTTVPLVRGEVLLQSKLASSKDEKQELALSLQPGERAV 121

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSNIRVIAIDHNIDSDERV 189
           T+ ++  S VGG++KP D VDVV    L  +    T   +V SN+RV+A+  +       
Sbjct: 122 TLAVNAVSGVGGVLKPGDRVDVVATFDLESQGTKTTYTALVASNVRVLALGSS----GEK 177

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               T TL +TP Q   +  A     + L LR   +   +      + D+ E GK
Sbjct: 178 KPYDTVTLAVTPRQGALITLATERGSVRLFLRGPKEQEATQLLPVKLPDLLEAGK 232


>gi|239814525|ref|YP_002943435.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110]
 gi|239801102|gb|ACS18169.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110]
          Length = 280

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 13/209 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++  D+ +G  V P +L  V +P  ++  G   D       + L+  +V+V +L+G+
Sbjct: 38  KVVVAAVDIELGSRVNPQMLSLVDWPSGSLPAGSFKD------AKSLEDRVVKVGVLRGE 91

Query: 107 PIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSL 160
            I   KL      GGLS+++  GKRA T+ ++    V G   P ++VDV++         
Sbjct: 92  AILEGKLAPVGTQGGLSAVIASGKRAMTVRVNDVVGVAGFALPGNYVDVMVNAQQDKNRG 151

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
            E +     VL  + V+A+    + D+ +  V S  TLEL+   ++ L  A+SV  LSLV
Sbjct: 152 EEGRQISKTVLEKVLVLAVAQEANRDDTKPKVVSAVTLELSLEDSEKLDLARSVGTLSLV 211

Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQI 248
           LR+  D    ++       +  E   + I
Sbjct: 212 LRNQMDKTTVATAGITKGQLFGEKDILPI 240


>gi|116623254|ref|YP_825410.1| SAF domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226416|gb|ABJ85125.1| SAF domain [Candidatus Solibacter usitatus Ellin6076]
          Length = 300

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 99/249 (39%), Gaps = 17/249 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    +M + VS V+AL+      RL                A    V+++   L  G  
Sbjct: 3   MDRRFVMVMGVSLVWALMVSAAFFRLAGGGG-------RTRAASRKQVVVATRPLPAGST 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNG 119
           +  + ++  + PE+    G    V      +++    V   I   +P+   +L V     
Sbjct: 56  LDRDAVKLRSVPEDVFPAGAFSRV------EDVLERPVISAIQPEEPVVEARLAVKGSGA 109

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVTVVLSNIRVIA 178
           GL  ++P G RA ++ ++    V G + P   VDV++     +        VL NI V++
Sbjct: 110 GLGPMIPTGMRAISVRVNDVVGVAGFVLPGMRVDVLVTGKPLNRADTETQTVLQNITVLS 169

Query: 179 IDHNIDSDERVLV--GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
               I +D R         TL +TP +A+AL  A +   + LVLR+  D   + +    +
Sbjct: 170 AGQTITTDGRSQPIMAPVVTLLVTPGEAEALTLANTEGHIQLVLRNSTDRISAPTRGRRL 229

Query: 237 WDVQEEGKE 245
            ++     E
Sbjct: 230 HELYGAAAE 238


>gi|294012432|ref|YP_003545892.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
 gi|292675762|dbj|BAI97280.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
          Length = 338

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 14/226 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVGM 59
           M   +++ +V + + A+   ++A  ++S          +    A   +VL++   L VG 
Sbjct: 1   MDAKKIVLLVGALIIAVTTALLARNMLSSSSAPPAGASSMPVEADQPHVLVATKALPVGT 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
           ++      +  +P++ V   +          Q+L G ++R  I  G P+ L  ++  G  
Sbjct: 61  ILDAESFRFQPWPKDLVEQAYYIKGQA--DPQKLVGSVIRTAISAGQPMTLGSVIKPGER 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVLSN 173
           G L++ L  G RA T+ +S  ++V G + P D VD+V+ +S+S             +L N
Sbjct: 119 GFLAAALGPGMRAVTVPVSAQNSVAGFVFPGDRVDLVLTQSVSGGGEGEPLKVSETILRN 178

Query: 174 IRVIAIDHNIDSDERVLVG-----STATLELTPMQAKALVAAQSVA 214
           +RV+A D  +D+            S  T+E+TP  A+ +  AQ++ 
Sbjct: 179 LRVLATDQRMDALGDDGKPVVQTYSNVTIEVTPKIAEKIAVAQTIG 224


>gi|197123318|ref|YP_002135269.1| Flp pilus assembly protein CpaB [Anaeromyxobacter sp. K]
 gi|196173167|gb|ACG74140.1| Flp pilus assembly protein CpaB [Anaeromyxobacter sp. K]
          Length = 307

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 16/214 (7%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
            E            V+++  DL     +  ++L  V +P  NV +G   D  +      L
Sbjct: 48  VETRTAAARVSTTPVVVATIDLPEATTLRADVLSVVQWPSANVPEGAASDPAK------L 101

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
              +VR  ++KG+P+   +L     G GL+++LP G RAA + ++    V G I P D V
Sbjct: 102 VDRVVRARVIKGEPVVESRLAAADAGHGLAAILPPGMRAAAVPVNDVVGVAGFIHPGDSV 161

Query: 153 DVVMVRSLSERKPT-----VTVVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPMQ 203
           DV++V        +       ++L N++V+A+   +  +    E+ L  + ATL +   Q
Sbjct: 162 DVIVVMRPETNGNSNPAFFSKIILQNVQVLAVGKELGRNERSLEKSLPATVATLMVDSEQ 221

Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           ++ L  AQ+   + L LRS  D     +   +  
Sbjct: 222 SEKLALAQTKGSILLTLRSGIDRELVDTTGVNPA 255


>gi|319788662|ref|YP_004148137.1| Flp pilus assembly protein CpaB [Pseudoxanthomonas suwonensis 11-1]
 gi|317467174|gb|ADV28906.1| Flp pilus assembly protein CpaB [Pseudoxanthomonas suwonensis 11-1]
          Length = 274

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 22/244 (9%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
               + I ++   AL+A  +A+  V      T    T++    + V +   D+  G ++ 
Sbjct: 7   SKNFLYIAIAVGMALLAAFVAVNYVQT----TVAERTQDNRPMVEVAVPMDDMPQGAILQ 62

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
           P  L     P E      +     P    + +G ++R P+  G P+    LV       S
Sbjct: 63  PGDLALRRIPAEYAPADAVT----PENHGQFEGRMLRSPVRGGAPLSASALV-PLYDQFS 117

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTVVLSNIRVI 177
            L+P+GK A T+ +  ++++ GMI P D +D++ ++   E            +L  +RV+
Sbjct: 118 RLIPRGKVAYTLSVDENNSISGMIAPGDLIDILFLKDKDESSGARTGALALPLLQQVRVL 177

Query: 178 AIDHNIDS--------DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           A    I           +     S+ TLEL   QAK L  A     L ++LR + D +P 
Sbjct: 178 ATGTRIGERVAPDGRPADDGQGFSSVTLELDHGQAKTLAVASEAGSLRVLLRELEDDSPG 237

Query: 230 SSED 233
             + 
Sbjct: 238 PHDG 241


>gi|119773844|ref|YP_926584.1| Flp pilus assembly protein CpaB-like protein [Shewanella
           amazonensis SB2B]
 gi|119766344|gb|ABL98914.1| Flp pilus assembly protein CpaB-like protein [Shewanella
           amazonensis SB2B]
          Length = 298

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 107/279 (38%), Gaps = 25/279 (8%)

Query: 1   MKLTRL----MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLA 56
           M+  R+    + + ++ V   +A             +    ++ +  K ++V+++  +L 
Sbjct: 1   MQSKRIDFNWVLLGIALVLGSLAAWATKNYFIVKEQEIRAELSNSNVKMVDVVVATQELR 60

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G +V    +   +   + +    I     P+   E+ G ++   +  G P+    L   
Sbjct: 61  KGDIVDETNMSVRSIRADVIPLDAIR----PSQFNEVAGQMLLSEMSPGRPLISAYLPGF 116

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---SLSERKPTVTVVLSN 173
                S LL +G+RA T+DI+  ++  GM+ P+D VD+ +     +    +  + +++  
Sbjct: 117 KTRQFSDLLQEGQRAVTIDINEENSTAGMLVPSDLVDLFLSYTVENGDSERVKMELLIEK 176

Query: 174 IRVIAIDHNIDSD---------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
            +V+A                 +     +T TL L+   A  +  A+   K   +LR+ A
Sbjct: 177 AQVLATGKRSIDVHPELVNSIYDNPDSYNTVTLALSTEDAIRVSLAKGRGKFVTLLRNKA 236

Query: 225 DLNPSS-----SEDSDVWDVQEEGKEIQIIKAGVIVNKD 258
           +  P +      +        +   +++ I  G  +   
Sbjct: 237 ESAPVAVTNMFGDQIFGMSGDKGSHQVEYITGGGGLKSS 275


>gi|217978827|ref|YP_002362974.1| Flp pilus assembly protein CpaB [Methylocella silvestris BL2]
 gi|217504203|gb|ACK51612.1| Flp pilus assembly protein CpaB [Methylocella silvestris BL2]
          Length = 338

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 106/266 (39%), Gaps = 25/266 (9%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF---INVLISKGDLAVGMVV 61
           R + IV+  VF +    + +  V     +  EV +   A       +L +   +  G ++
Sbjct: 4   RKLLIVLGAVFVIAGVGLCIAWVGQLRNREIEVASPAAAPAASEQAILSATRAIPAGELL 63

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GG 120
             + + W       V  G +       A  E  G + R     G+ +    LV   +   
Sbjct: 64  RSDDIGWKNVGAAGVQAGNLLRGQ--VAETEFFGAITRRDFAAGEGLIASDLVKPNDRRF 121

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIR 175
           L+++L  G+RA ++ +  + +  G++ P D+VDV++ +   +     R+     VL N+R
Sbjct: 122 LAAVLKPGRRALSVSVDAAQSAAGLVLPGDYVDVILTQDFGDKIDIGRRTVSETVLWNVR 181

Query: 176 VIAIDHNIDSDERVL-----------VGSTATLELTPMQAKALVAAQSVAKLSLV---LR 221
           VIA+D ++D+    +           +  T TLE+   QA+ L+ A  + K  L    L 
Sbjct: 182 VIAVDQSLDAQTSTVAEHTALGAESHIPKTVTLEMFERQAETLLVAAQLGKFQLAVRPLV 241

Query: 222 SIADLNPSSSEDSDVWDVQEEGKEIQ 247
              D+       +      +    ++
Sbjct: 242 GSGDVKIEDQHIAKPLWASDVSPALK 267


>gi|148976308|ref|ZP_01813032.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3]
 gi|145964402|gb|EDK29657.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3]
          Length = 290

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/269 (20%), Positives = 112/269 (41%), Gaps = 24/269 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RL+ + +      ++ ++     S  +  +E+V      + I VL+    + +G  
Sbjct: 1   MTAKRLLLLSLLCSVVALSVLLF----SQGNNASEKVSVPTTQQTIKVLVPSRTIDIGQN 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
            TPN  +W A P   + +       +  +       + +  +++G  +    + +   G 
Sbjct: 57  YTPNSFQWKAIPLGELENYIDYVTPESISEDHSMSGIAQTKLVEGSVLSHADITEPKGGY 116

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVV 170
            LS  L  G RA ++ +   +A  G I+P D VD++++ S            +   VT +
Sbjct: 117 SLSFKLQPGYRAISVPVDQITANSGFIQPGDRVDILLLGSQDGELLRYGNSSQGLYVTTI 176

Query: 171 LSNIRVIAIDHNIDSDERVLV----------GSTATLELTPMQAKALVAAQSVAKLSLVL 220
           + + RV+A ++   ++    V           S+ +LE+TP QA  +V A+ + KL+L L
Sbjct: 177 VHDARVLAFNNTQAAESYQKVRDSYGAVIPDNSSVSLEVTPEQANQVVLAEQLGKLTLAL 236

Query: 221 RSIADLNPSSSEDSDVWDVQEEGKEIQII 249
           R   D   +  + + V          QI+
Sbjct: 237 RGQNDTQVNVQQANSVTLEVISPDTTQIL 265


>gi|51468905|emb|CAE47778.1| pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 314

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 100/259 (38%), Gaps = 31/259 (11%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            ++ AG+ A  L+  +  + +    +       V+++K D+A    +   ++E    P +
Sbjct: 24  LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTIYDTMVETKELPAD 83

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAAT 133
            +    I          E+ G +  VPI KG  +    L+    + G+S  +   KRA T
Sbjct: 84  FIQPDAITIPD------EIIGNVAAVPIRKGQMVVKNNLLTPGPDTGISLQVAPSKRAVT 137

Query: 134 MDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIRVIAIDHNIDSD---- 186
           + +     V  +I+P D +D+           ++  V  +++++ V+A   ++ ++    
Sbjct: 138 IPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNIPRM 197

Query: 187 ---------------ERVLVGSTATLELTPMQAKAL--VAAQSVAKLSLVLRSIADLNPS 229
                                +T T+E TP +A+ L  + + +   L + LR+ +D    
Sbjct: 198 FELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDRTIP 257

Query: 230 SSEDSDVWDVQEEGKEIQI 248
               S   D       + +
Sbjct: 258 PRMPSSTSDSVLGKPMVSV 276


>gi|332284570|ref|YP_004416481.1| putative secreted protein [Pusillimonas sp. T7-7]
 gi|330428523|gb|AEC19857.1| putative secreted protein [Pusillimonas sp. T7-7]
          Length = 326

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 99/248 (39%), Gaps = 13/248 (5%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              L  ++++GV  L A   A + +     + + +  +     +  +++  DL  G  + 
Sbjct: 7   NRSLAMLLLAGVAGLGAAWAAKQHIDG---KVQLLEAQARTPMVERIVAAYDLPAGTRLG 63

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
           P  L    FP      G +     P    EL G ++R P+  GD +       + +   S
Sbjct: 64  PEHLALRHFPANVASSGSL----APGRFTELTGTMLRAPLRGGDAVLEVHTTGQDHAAFS 119

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
           S L  G+RA +M +   ++V G+++P D +D+ +     +R+     +L  + V+A D N
Sbjct: 120 SHLSAGRRAISMPVDAINSVSGLLQPGDLIDLYVSFEY-QRRHITAPLLQGVLVLATDAN 178

Query: 183 ID-----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
                          +T TL+ +P  A  LVAA+    ++ VLR   D+  S        
Sbjct: 179 TQFVQDAGHASRGSYATVTLDASPEDAVKLVAARQGGTITAVLRPPQDVASSQKAVRGDL 238

Query: 238 DVQEEGKE 245
                   
Sbjct: 239 ASLLGVNR 246


>gi|326797326|ref|YP_004315146.1| Flp pilus assembly protein CpaB [Marinomonas mediterranea MMB-1]
 gi|326548090|gb|ADZ93310.1| Flp pilus assembly protein CpaB [Marinomonas mediterranea MMB-1]
          Length = 315

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 104/280 (37%), Gaps = 36/280 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN-VLISKGDLAVGM 59
           MK + +  +  + +FAL   ++   L++                    VL++   L  G 
Sbjct: 1   MKASSVFFVSGALIFALGGALLGSALLTSEPPPKTVTKVVPKKPNYRAVLVASNTLRPGD 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118
            +    +EW A  ++   D F       +   +L G  V  PI  G  +  + LV     
Sbjct: 61  FMNATSIEWRAADKQYPEDAFFLKG--LDEKSQLYGATVTQPIPAGTELESDLLVSPGEP 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------- 165
           G ++S+L  G RA  +   + ++  G+I   D VDV++       +              
Sbjct: 119 GFIASVLKPGMRAVAIPADVVTSNAGLISGGDRVDVILSLKRDYEQGADNNPLATIKLPK 178

Query: 166 -TVTVVLSNIRVIAIDHNID-----------------SDERVLVGSTATLELTPMQAKAL 207
                +L N+RV++++  +D                    +     T TLE+ P   + L
Sbjct: 179 LASQTLLRNVRVLSLNGTLDAFREKVQKVESKKEKKTDSNKRKSYETVTLEVLPKDVERL 238

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
             A+ V  L L LRS+   + + S   +  D +E   E+ 
Sbjct: 239 TVAREVGILQLALRSVQGQDLALSTSPEK-DSKESQSEVT 277


>gi|283779854|ref|YP_003370609.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068]
 gi|283438307|gb|ADB16749.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068]
          Length = 372

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 104/239 (43%), Gaps = 19/239 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M++  L+ I ++    LVA I   +++                +   +L++  D+ +   
Sbjct: 1   MRMKSLILIFIALGCGLVASIGISQVMERGGSGAAPA-----MEMEQILVALADIDIDAK 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    ++   +P+  V +G +       ++ E++    +    KG+PI L K+ D+    
Sbjct: 56  LNAENVQLEEWPKSKVPEGAVR------SLDEVEAKFAQQRFFKGEPILLAKISDQNVNP 109

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRVIA 178
           +   +P+G R   + +   + V   I P D VDV++    SE   +     +L N+RV A
Sbjct: 110 M-IRIPEGYRVMPVKVDDET-VLKAISPGDRVDVMVFLRRSEEIKQTATYTILRNVRVFA 167

Query: 179 IDHNIDSD----ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           ++ N + D     + +   T +L + P Q++ L  A  + K+ L +R   + + +   +
Sbjct: 168 VNSNTERDLETKGQDVNARTVSLIIKPQQSRELAVASQIGKIILTMRRPDETDEAGEGE 226


>gi|328953762|ref|YP_004371096.1| Flp pilus assembly protein CpaB [Desulfobacca acetoxidans DSM
           11109]
 gi|328454086|gb|AEB09915.1| Flp pilus assembly protein CpaB [Desulfobacca acetoxidans DSM
           11109]
          Length = 272

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 101/236 (42%), Gaps = 16/236 (6%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
           F   A  IA   +                          ++A G V+ P +L+ V  P+E
Sbjct: 16  FGGFAAYIASGWLKARARPAARDSVAMMPAVAA----ARNIAPGSVLIPELLKVVQLPKE 71

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAAT 133
           +V      D      ++ L+G + R  I+ G+ I+  +L  +G  GG++ ++   KRA T
Sbjct: 72  HVAADAATD------LKALEGRVTRQLIVAGEVIQEHELAPKGAPGGMAGIIGNDKRAVT 125

Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIAIDHNIDS---DER 188
           + +  +S V G I P + VDV++    +E    P   +VL N+ V+    +I+     ER
Sbjct: 126 IKVDEASGVAGFIVPGNRVDVLLSLDRNEFKNDPVTQIVLQNLPVLGTGQDIEQQKAGER 185

Query: 189 VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
             V  T TLE+TP + + L  A     ++L LR   +     +  + V  +    K
Sbjct: 186 PKVVPTVTLEVTPEEGERLALAAKEGTITLALRGWTEKAAIPTAGARVSALLTPEK 241


>gi|307293449|ref|ZP_07573295.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
 gi|306881515|gb|EFN12731.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
          Length = 338

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 105/226 (46%), Gaps = 14/226 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVGM 59
           M   +++ +V + + A+   ++A  ++S          +    A   +VL++   L VG 
Sbjct: 1   MDAKKIVLLVGALIIAVTTALLARNMLSSSSAPQASASSMPVEADQPHVLVATKALPVGT 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
           ++      +  +P+E V   +       +  Q+L G ++R  I  G P+ L  ++  G  
Sbjct: 61  ILDAESFRFQPWPKELVEQAYYLKGQ--SDPQKLVGSVIRTAISAGQPMTLGSVIKPGER 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVLSN 173
           G L++ L  G RA T+ +S  ++V G + P D VD+++ +S+S             +L N
Sbjct: 119 GFLAAALGPGMRAVTVPVSAQNSVAGFVFPGDRVDLMLTQSVSGGGDGEPLKVSETILRN 178

Query: 174 IRVIAIDHNIDSDERVLVG-----STATLELTPMQAKALVAAQSVA 214
           +RV+A D  +D+            S  T+E+TP  A+ +  AQ++ 
Sbjct: 179 LRVLATDQRMDALGDDGKPVVQTYSNVTIEVTPKIAEKIAVAQTIG 224


>gi|322434103|ref|YP_004216315.1| Flp pilus assembly protein CpaB [Acidobacterium sp. MP5ACTX9]
 gi|321161830|gb|ADW67535.1| Flp pilus assembly protein CpaB [Acidobacterium sp. MP5ACTX9]
          Length = 291

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 19/230 (8%)

Query: 1   MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M   RL    +++ + + +   +  R +  H                + + +   L  G 
Sbjct: 1   MNGRRLTTAFLIALLISGLCTWVLSRKMGTH--------AAERVADQHYVAASRPLQSGE 52

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            + P+ +E V +P  N   G           ++L G  V  P+ K  P+  + L   G+G
Sbjct: 53  QLKPDSMELVNWPASNPIAGGFLKP------EDLVGRSVLYPVEKDQPLTDKLLSTAGSG 106

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-KPTVTVVLSNIRVI 177
            GL++ +P G RA ++       V G + P  H+DV++     +  +P    VL +  V+
Sbjct: 107 PGLAARIPAGMRAISLKSDEIMGVAGFLSPGSHLDVLVTYRTDKNPEPVTLTVLQDAEVL 166

Query: 178 AIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           A       D D + +  +  TL LTP  A+  V A S   +  +LRS +D
Sbjct: 167 AAGQKIQPDPDGKPVTATVVTLLLTPEDAQRAVLASSQGAIHFILRSGSD 216


>gi|225181998|ref|ZP_03735430.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1]
 gi|225167283|gb|EEG76102.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1]
          Length = 229

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 16/230 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  +   +  S + ALVA       ++    Q++            +L+++ ++     
Sbjct: 1   MKGKKFFLL--SLILALVAAGAIFHYLNEMERQSKSAAN-----LTTILVAREEIPARTR 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           ++ ++      P++ +    I +        ELDG   R  ++ G+ +   +LV   +  
Sbjct: 54  LSASMFTTAEVPQDAIHGDAIRETS------ELDGAYARERLVAGEQVLSARLVFEQSET 107

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVTVVLSNIRVIA 178
           GLS  +  G RA T+ ++  S V G I P D+VD ++      +      VV S I+V+A
Sbjct: 108 GLSYKVSDGHRAVTVPVNNVSGVAGYILPGDYVDAIVTIESTEDEDTVTKVVESKIKVLA 167

Query: 179 IDH-NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
                ++ D   L+  T TL+       A++ A     L LVLR + + N
Sbjct: 168 SGQYTVEQDREQLIVETVTLDTPADAVTAIIQASERGSLRLVLRPVEESN 217


>gi|288956968|ref|YP_003447309.1| pilus assembly protein [Azospirillum sp. B510]
 gi|288909276|dbj|BAI70765.1| pilus assembly protein [Azospirillum sp. B510]
          Length = 288

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 18/237 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MKL  +   + +   A+V G++    V                    + ++  DL  G  
Sbjct: 1   MKLGTVFLGIAAVSMAVVGGLMVQAAVG-----ARGAPAAVEIPQRRIAVAAADLPAGSF 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + P  + W AFPE  +    +  V   + +  L G +VR  +  G+ I  ++L+     G
Sbjct: 56  LQPMSVRWEAFPENALRPETL--VEGKDNIDSLVGAVVRDAVKAGEIISRDRLLSPRERG 113

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNIR 175
            L+++L  G RAA++ ++  S   G+I P DHVD+++ +  ++           +L N+R
Sbjct: 114 FLAAVLAPGMRAASVAVNEVSGTAGLIFPGDHVDLLLTQEANDEGAARRLATETILDNLR 173

Query: 176 VIAIDHNID------SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           V+A+D   D        +   V  T TLE+T  QA+ +  A ++ KL+L LRS+A  
Sbjct: 174 VLAVDQRTDFPKGEEPGQTARVARTVTLEVTAKQAQVISVAANLGKLTLSLRSLASA 230


>gi|188586926|ref|YP_001918471.1| Flp pilus assembly protein CpaB [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351613|gb|ACB85883.1| Flp pilus assembly protein CpaB [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 233

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 18/237 (7%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVGM 59
           KL +  G++VS + A+V  +I  + +S      E            + V+++  +L  G 
Sbjct: 3   KLKKYRGLLVSLILAIVTVLIIHQYISSLETAYEGTGPREIDGEDQVAVVVATSNLDTGT 62

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           ++T + L+    PE+      + D       +E+ G +++  +++ + +   +++     
Sbjct: 63  ILTQDHLDTRKVPEQTAHPQAVTD------KEEITGEVLKQDVVEHEVLMSSRVLGEEEA 116

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVL 171
             LS ++P+ KRA ++ +   S V G I+  D+VDVV  +   +R+        +  ++L
Sbjct: 117 NKLSEVIPENKRAMSVAVDQVSGVAGFIQAGDYVDVVATKDEEDREGQEPSQDSSSEIIL 176

Query: 172 SNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            N++V+A+   I     E V   ST TL +   +A  L  A+    + L+L+ I + 
Sbjct: 177 DNLQVLAVGDRILYSRQELVQEVSTVTLAVNRNEATELTHAEEEHVIRLLLQPITEN 233


>gi|327540753|gb|EGF27320.1| Pilus assembly, Flp-type CpaB [Rhodopirellula baltica WH47]
          Length = 403

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 103/241 (42%), Gaps = 20/241 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   +  ++++ V   +A I   + +        +   ++    + + ++   + +   
Sbjct: 30  MRNKSVF-LILACVCGTIAAIGVSQWMQ------AQSTGQSSVATVEIFVTAKTIDIAEE 82

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + +    +P + V  G          +++++G   R    +G+P+   KL+   NG 
Sbjct: 83  ITADKIRLEQWPADRVPTGA------SGKLEDVEGKFARQRFYEGEPVMPVKLMADANGS 136

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIA 178
            S  +P G    +M     S+V  +++P D VDV+     SE   + T   VL+ +RV A
Sbjct: 137 -SQTIPVGFSVVSMRADPESSVATLVRPGDRVDVMAYFVKSELIPETTAKTVLTGVRVFA 195

Query: 179 ID----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           +D      +DS+       + +L +      A   A  + K+ L L + +D+N +   ++
Sbjct: 196 VDGRTEREVDSEAEAKPARSISLLIHKKDTPAWTYASELGKIRLTLGNPSDINETKDGET 255

Query: 235 D 235
           D
Sbjct: 256 D 256


>gi|307726634|ref|YP_003909847.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
 gi|307587159|gb|ADN60556.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
          Length = 365

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 104/264 (39%), Gaps = 31/264 (11%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVTPN 64
            + +  +   A     +  + ++    + ++ I  N     + V++   DL  G  ++ +
Sbjct: 15  WVLLFAAVCVAGGLTFLLYKYLNEREARLKQQIAANKVHDAVQVVVPARDLPAGTPLSSS 74

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
                    + V+D  I     P+  ++     +  P+ +G P+R   +        S +
Sbjct: 75  DFVSREIQGDLVYDDMIR----PDNFEQYRTSHLVKPVRRGLPLRAGDIDALRGRDFSDI 130

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSNIRVIA 178
           LP G+RA T++I   ++   +++P + VDV  +         S+ +    +++ N+ V+A
Sbjct: 131 LPAGQRAVTVEIDTVNSTALLVRPGNRVDVYWIGKAFHQDRTSDDQRVAQLIMPNVLVLA 190

Query: 179 IDH--------------------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
                                  +  S ++ +  +T TL++    A  +  AQ +  L L
Sbjct: 191 TGQDLRPRDAGEASEQDQANANSSAMSRQQGMGYTTVTLQVPAEDAGRIALAQKIGGLRL 250

Query: 219 VLRSIADLNPSSSEDSDVWDVQEE 242
           +LR+  D   +    ++  DV  +
Sbjct: 251 ILRNADDKASAGPVLTEEQDVFAD 274


>gi|296134297|ref|YP_003641544.1| Flp pilus assembly protein CpaB [Thermincola sp. JR]
 gi|296032875|gb|ADG83643.1| Flp pilus assembly protein CpaB [Thermincola potens JR]
          Length = 257

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 100/264 (37%), Gaps = 43/264 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   ++  + V+   AL+  +     +                    V+++  ++    V
Sbjct: 1   MSNKKI--LFVAVFLALLTTLAMNYYLEQVKKAATN------VTTKKVVVANVNIPARTV 52

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +T +++     PEE V    + D       +++ G +    I  G+ +  EK++ +    
Sbjct: 53  ITGDMVSVKDVPEEFVHPNAVLDE------EQVIGFVSGSDISAGEQVLREKILRKEGNP 106

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------------RSLSERKPT 166
             LS  +P G RA ++ I+  + VGG+++P D VDV+              ++   +   
Sbjct: 107 VSLSYQVPLGSRAMSVPINEVTGVGGLVRPGDRVDVIGTIELETSNPASNQQTGPTQTTV 166

Query: 167 VTVVLSNIRVIAIDHN---------------IDSDERVLVGSTATLELTPMQAKALVAAQ 211
             V+L N+ V+A+  N                 +++        TL +   + +AL    
Sbjct: 167 AHVLLQNVEVLAVGDNFTPATNRAVNQGKEDAKNNQSDTGAKNVTLAIPADKMQALTLML 226

Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235
              K++L LRS  D +       D
Sbjct: 227 DHGKVTLALRSPLDQSRYDRPPFD 250


>gi|330811038|ref|YP_004355500.1| hypothetical protein PSEBR_a4092 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379146|gb|AEA70496.1| Hypothetical protein; putative exported protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 271

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 16/227 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    L  I +S V  L A  +A   +S        +         +V+++  ++  G +
Sbjct: 1   MSSRTLPLIGISLVMGLGAAWMADSWLS------ARLNATPDDHLRSVVVATVEIPFGQM 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           V    +  V  P + + D         ++ ++  G +    IL+GD +R  +L +   G 
Sbjct: 55  VEAQQVTTVRMPMDTIPDDAF------DSSEQAVGKIATFDILRGDIVRGARLSEHLGGS 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRVI 177
            L+SL+   KRA ++ +     VGG + P + VDV+  ++ +      T   +L N+RV+
Sbjct: 109 TLASLIAPDKRAISVRVDDVVGVGGFLLPGNRVDVLATKTTNAGSNSATSRTLLENLRVL 168

Query: 178 AIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
           A+D    +D  + +V    TLE++  +A+ LV AQ+  KL L LR+ 
Sbjct: 169 AVDQTAGTDKTQPVVVRAVTLEMSATEAELLVTAQTEGKLQLALRNP 215


>gi|32473552|ref|NP_866546.1| pilus assembly protein CpaB [Rhodopirellula baltica SH 1]
 gi|32398232|emb|CAD78327.1| probable pilus assembly protein CpaB [Rhodopirellula baltica SH 1]
          Length = 403

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 103/241 (42%), Gaps = 20/241 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   +  ++++ V   +A I   + +        +   ++    + + ++   + +   
Sbjct: 30  MRNKSVF-LILACVCGTIAAIGVSQWMQ------AQSTGQSSVATVEIFVTAKTIDIAEE 82

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + +    +P + V  G          +++++G   R    +G+P+   KL+   NG 
Sbjct: 83  ITADKIRLEQWPADRVPTGA------SGKLEDVEGKFARQRFYEGEPVMPVKLMADANGS 136

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIA 178
            S  +P G    +M     S+V  +++P D VDV+     SE   + T   VL+ +RV A
Sbjct: 137 -SQTIPVGFSVVSMRADPESSVATLVRPGDRVDVMAYFVKSELIPETTAKTVLTGVRVFA 195

Query: 179 ID----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           +D      +DS+       + +L +      A   A  + K+ L L + +D+N +   ++
Sbjct: 196 VDGRTEREVDSEAEAKPARSISLLIHKKDTPAWTYASELGKIRLTLGNPSDINETKDGET 255

Query: 235 D 235
           D
Sbjct: 256 D 256


>gi|144898050|emb|CAM74914.1| Flp pilus assembly protein CpaB [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 288

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/279 (22%), Positives = 116/279 (41%), Gaps = 21/279 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ ++V+ + A +  ++A R           V        + VL+   D+A G  
Sbjct: 1   MRPLAIVLVIVAVLAAGLTALLAKRWTDKQSTARPTVAA----DSVEVLVLARDVATGSA 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGNG 119
           ++   L +  +P  N    F+      +      G + R P+ +G+P          G+G
Sbjct: 57  LSDADLRYENWPAVNA-GRFMTRKDGDDPKARAIGAVARRPLSEGEPFTPSATFTRDGSG 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-------------KPT 166
            L+ +L  G RA ++ IS +SAV G + P D VDVV+                    +  
Sbjct: 116 ILAGMLAPGMRAVSVAISNASAVSGFVVPGDRVDVVLAADFQRADSEAAGKGGGAIVRYA 175

Query: 167 VTVVLSNIRVIAIDHN--IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
              VL++++V+A+D       D   + G TATLE++P QA+ LV A  + +LSL+LR + 
Sbjct: 176 AETVLADVKVLAVDQQFSKGKDGPTIQGKTATLEVSPDQAEILVTAGLMGQLSLILRGVG 235

Query: 225 DLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEGIS 263
             +  +          +    ++ +  G          S
Sbjct: 236 PQDAGNQTKRPFTADTQASAAMRALAGGSAKPAAKSTGS 274


>gi|302037440|ref|YP_003797762.1| pilus assembly protein CpaB [Candidatus Nitrospira defluvii]
 gi|300605504|emb|CBK41837.1| Pilus assembly protein CpaB (modular protein) [Candidatus
           Nitrospira defluvii]
          Length = 403

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 115/253 (45%), Gaps = 22/253 (8%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              L+ + + G+  L   + A + +     +   +  E  ++ I + ++  DLA G V+ 
Sbjct: 5   RRALIVVALGGLIGLATSLWAYQWLQDV-TEQTRLDMEAKSRTIPIAVAAADLAWGAVLA 63

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGNGG 120
            + +  V FP + V +G         + + L G +V + + + +PI   KL      +GG
Sbjct: 64  DDAVRMVPFPADTVPEGHFA------SAETLKGRVVIMDVKQHEPILESKLAPATVTSGG 117

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIA 178
           ++++    KRA  + +    AVGG IKP D VDV+    R      P   VVL N+RV+A
Sbjct: 118 VAAVTHPEKRAVAVKVDDVVAVGGFIKPGDRVDVLTTVRRPGKTDDPVTKVVLENVRVLA 177

Query: 179 IDHNID-----------SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           +  + +            + ++ V S  TLE+ P +A+ L  A +  K+ L LR+   + 
Sbjct: 178 MGQDTERAAQTDKAAKNQETKLSVPSVMTLEVAPDEAEKLALASTEGKVQLALRNPQSVT 237

Query: 228 PSSSEDSDVWDVQ 240
             ++  + +  + 
Sbjct: 238 AVATTGATISSLL 250


>gi|42521753|ref|NP_967133.1| putative flp pilus assembly protein CpaB [Bdellovibrio
           bacteriovorus HD100]
 gi|39574283|emb|CAE77787.1| putative flp pilus assembly protein CpaB [Bdellovibrio
           bacteriovorus HD100]
          Length = 301

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 100/259 (38%), Gaps = 31/259 (11%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            ++ AG+ A  L+  +  + +    +       V+++K D+A    +   ++E    P +
Sbjct: 11  LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTIYDTMVETKELPAD 70

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAAT 133
            +    I          E+ G +  VPI KG  +    L+    + G+S  +   KRA T
Sbjct: 71  FIQPDAITIPD------EIIGNVAAVPIRKGQMVVKNNLLTPGPDTGISLQVAPSKRAVT 124

Query: 134 MDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIRVIAIDHNIDSD---- 186
           + +     V  +I+P D +D+           ++  V  +++++ V+A   ++ ++    
Sbjct: 125 IPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNIPRM 184

Query: 187 ---------------ERVLVGSTATLELTPMQAKAL--VAAQSVAKLSLVLRSIADLNPS 229
                                +T T+E TP +A+ L  + + +   L + LR+ +D    
Sbjct: 185 FELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDRTIP 244

Query: 230 SSEDSDVWDVQEEGKEIQI 248
               S   D       + +
Sbjct: 245 PRMPSSTSDSVLGKPMVSV 263


>gi|121534342|ref|ZP_01666166.1| SAF domain [Thermosinus carboxydivorans Nor1]
 gi|121307112|gb|EAX48030.1| SAF domain [Thermosinus carboxydivorans Nor1]
          Length = 286

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 102/232 (43%), Gaps = 23/232 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MKL+    + ++ V +L    +  + +        E   + P + + V+++K D+     
Sbjct: 1   MKLSTKGVLAIALVLSLATTGLIYKYLQ-------EATQKTPQEGVVVVVAKVDIPPKTK 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           +T  ++     P E V  G + +      ++   G + R  I+ G+ I   +LV +  + 
Sbjct: 54  ITAEMVATAKVPAEYVQPGAVRE------LKTAVGAIAREHIVAGEQIAERRLVIQGKSA 107

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIA 178
           G + ++P  KRA T+ ++  + V G +KP D+VDVV     +        ++L N+ V+A
Sbjct: 108 GFTGIIPPDKRAVTIAVTEVTGVAGFVKPGDYVDVVATFDQNTVGDNVSQIILQNVLVLA 167

Query: 179 IDH--------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
            +              +  +  +T TL +TP +   L  A+   K+ L LR 
Sbjct: 168 ANRDAEAGAADGAKDKKEAIKTATVTLAVTPDEVAQLALAEDKGKVRLALRP 219


>gi|76663414|emb|CAE47790.1| pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 302

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 100/259 (38%), Gaps = 31/259 (11%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            ++ AG+ A  L+  +  + +    +       V+++K D+A    V   ++E    P +
Sbjct: 11  LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTVYDTMVETKELPAD 70

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAAT 133
            +    I          E+ G +  VPI KG  I    L+    + G+S  +   KRA T
Sbjct: 71  FIQPDAITVPD------EIIGNVAAVPIRKGQMIVKNNLLTPGPDTGISLQVAPSKRAVT 124

Query: 134 MDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIRVIAIDHNIDSD---- 186
           + +     V  +I+P D +D+           ++  V  +++++ V+A   ++ ++    
Sbjct: 125 IPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNIPRM 184

Query: 187 ---------------ERVLVGSTATLELTPMQAKAL--VAAQSVAKLSLVLRSIADLNPS 229
                                +T T+E TP +A+ L  + + +   L + LR+ +D    
Sbjct: 185 FELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDRTIP 244

Query: 230 SSEDSDVWDVQEEGKEIQI 248
               S   D       + +
Sbjct: 245 PRMPSSTSDSVLGKPVVSM 263


>gi|148261012|ref|YP_001235139.1| SAF domain-containing protein [Acidiphilium cryptum JF-5]
 gi|326404412|ref|YP_004284494.1| putative pilus assembly protein [Acidiphilium multivorum AIU301]
 gi|146402693|gb|ABQ31220.1| SAF domain protein [Acidiphilium cryptum JF-5]
 gi|325051274|dbj|BAJ81612.1| putative pilus assembly protein [Acidiphilium multivorum AIU301]
          Length = 275

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 16/240 (6%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M + ++    L  G+     V+   +       + P K + +L +   LA G ++ P   
Sbjct: 1   MLLRIALFILLALGLAGFGTVAWLDMHPSHPHAKAP-KMVALLATGRPLAPGTLLQPADF 59

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLL 125
                P   V    +     P       G +VR  +  GD +  + ++  G+ G L+++L
Sbjct: 60  VAENRPPSKVPADAV--PDTPANRAAYTGAMVRHRLSAGDLLATDIVIRPGDHGFLAAVL 117

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVLSNIRVIAI 179
             G RA ++ +   +   G+I P DHVD+++ + L+       ++     VLS++RVIAI
Sbjct: 118 QPGMRAVSVGVDAITGAAGLIWPGDHVDLLLTQHLTGANLLPTQRVAAETVLSDVRVIAI 177

Query: 180 DHNIDSDERVL------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
           D  +                T TLE+TP QA+ +  A  +  LSL++R        + + 
Sbjct: 178 DQRLVQGASGTHPAAKNTARTVTLEVTPEQAERVEVAAHLGPLSLIVRPSEAARGPTPKP 237


>gi|315497466|ref|YP_004086270.1| flp pilus assembly protein cpab [Asticcacaulis excentricus CB 48]
 gi|315415478|gb|ADU12119.1| Flp pilus assembly protein CpaB [Asticcacaulis excentricus CB 48]
          Length = 304

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 68/276 (24%), Positives = 112/276 (40%), Gaps = 45/276 (16%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
            M   +              A  + VL++   L VG  +    L W A+PE+ + + +  
Sbjct: 25  GMIGGNGASNANASQKVAVEAPTVKVLVAARHLKVGERIAEADLAWKAWPEDGITESYFT 84

Query: 83  DV-------------------------------------HQPNAMQELDGVLVRVPILKG 105
           D                                      +    M  + G +VR  +L  
Sbjct: 85  DKPVTPVAPAEAKSAEDKALEEKVKNGAAQVADVADKTLNPTRGMDAVLGGVVREEMLAN 144

Query: 106 DPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           +PI   K+V    GG ++ +L  G RA  + +++ S  GG I P D VD+V+   L    
Sbjct: 145 EPIVARKVVRADAGGFMAVMLAPGMRAMAVPVTVESTAGGFILPGDRVDIVVSTELQSNG 204

Query: 165 PTV---TVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
            T      VL N++V+A+D      SD+  ++G+TATLE+ P + +AL  A++   LSL+
Sbjct: 205 QTTHVAKPVLRNVKVLAVDQTVEAKSDQPSVIGATATLEVRPEEGEALAQAKAQGPLSLM 264

Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIV 255
           LRS AD+   S            G ++ + + G   
Sbjct: 265 LRSYADVGGPSGRVG--PSATGTGNKVVVYRNGQGT 298


>gi|312883753|ref|ZP_07743472.1| Flp pilus assembly protein CpaB, putative [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309368502|gb|EFP96035.1| Flp pilus assembly protein CpaB, putative [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 279

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 21/227 (9%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79
             IA+ L++P   Q E+        F  VL++K  + VG   T N+ +W    E+ + + 
Sbjct: 16  VGIAILLLNPSKPQFEQSQAAAEI-FKRVLVAKQRVVVGQPYTLNMFQWEKVSEQELSNY 74

Query: 80  FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISI 138
                 +  +  +L   +    I  G  +  +       G  ++  +  G RA ++ +  
Sbjct: 75  LDFISEEDFSRLDLKSGIAHTAIQSGQVMSKDDFETPNGGISMAFKVQNGHRAISVPVDA 134

Query: 139 SSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAIDHNIDSDE-- 187
            +A  G ++P D VD++++ S  E             VT +  N+RV+A +   D  +  
Sbjct: 135 VTANSGFVQPGDKVDILLLGSQVEELKKYDNQVAGLYVTTIAVNVRVLAFNQYADPQDFQ 194

Query: 188 --------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
                    +   S+ +LE+TP QA  +V A  + KL+L LR   + 
Sbjct: 195 KNRSAYGADIPDNSSVSLEVTPEQATQIVLANQIGKLTLSLRGAGEA 241


>gi|121607247|ref|YP_995054.1| SAF domain-containing protein [Verminephrobacter eiseniae EF01-2]
 gi|121551887|gb|ABM56036.1| SAF domain [Verminephrobacter eiseniae EF01-2]
          Length = 306

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 97/226 (42%), Gaps = 8/226 (3%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
             Q   +   +  + I +L++K +L  G ++    +     P +      I     P   
Sbjct: 39  SRQVAAIEARSKKETIALLVAKRELKKGDLLATGNVAVREIPLDYAHSNAI----APEHF 94

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
           + ++G  +   +  G+ +    +  R     S+ +  G+RA T+ +   +++ G+++P D
Sbjct: 95  ERIEGQGIEHGLKAGEMLLWSLMQTRKAATFSARIEIGRRAITVHVDEINSISGLLEPGD 154

Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD---ERVLVGSTATLELTPMQAKAL 207
            +D+++       K     +L N++V+A       D         ST TL+ T  QA+++
Sbjct: 155 AIDLMVTLDR-GGKKITFPLLQNVQVMATGQRSADDPKSGERRQYSTVTLDTTQAQAQSV 213

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253
           + A+   K++ +LR+  D    + + + +  +  +  + Q +  G 
Sbjct: 214 IVAREAGKITALLRNPQDTQVQAGDSAAIAALLGQAGDAQSLADGA 259


>gi|329847252|ref|ZP_08262280.1| flp pilus assembly protein CpaB [Asticcacaulis biprosthecum C19]
 gi|328842315|gb|EGF91884.1| flp pilus assembly protein CpaB [Asticcacaulis biprosthecum C19]
          Length = 311

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 123/306 (40%), Gaps = 50/306 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT--ENPAKFINVLISKGDLAVG 58
           MK +R + + V+ + A++   +   +++    Q  +             VLI+  +L  G
Sbjct: 1   MKASRYVVMGVAAIAAILLAFLVRGMIAGGGAQEAKATVDKTPAVATARVLIAARELKAG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNA----------------------------- 89
             ++   L W  +P  ++   +I D   P                               
Sbjct: 61  TRISEADLTWQEWPVASLNAAYIVDGGMPAGAPGMEGAAKPAADKPKSDVEEKVGDVTQA 120

Query: 90  ----------MQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISI 138
                      +   G + R  IL  +PI   K+V    GG ++ +L  G RA  + +S+
Sbjct: 121 VADKIAPSPTKEAYVGGVAREDILANEPIIDAKIVRSDEGGFMAVMLQPGMRALAVPVSV 180

Query: 139 SSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVVLSNIRVIAIDHN--IDSDERVLV 191
            +  GG I P D VD+++              +V  VL NIRV+AID +   + D++ ++
Sbjct: 181 DNTAGGFILPGDRVDILVTHQLPSATGRGTIDSVQPVLRNIRVLAIDQSVAAEQDKQTVI 240

Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK-EIQIIK 250
           G+TATLE++P   + +  A++   LSL+LRS AD    S   +            +++ +
Sbjct: 241 GATATLEVSPGDGQVVTLAKASGTLSLMLRSYADAQGPSGAVTTSPTGGASEDLPVRVYR 300

Query: 251 AGVIVN 256
            G    
Sbjct: 301 NGQATE 306


>gi|332188388|ref|ZP_08390113.1| flp pilus assembly protein CpaB [Sphingomonas sp. S17]
 gi|332011617|gb|EGI53697.1| flp pilus assembly protein CpaB [Sphingomonas sp. S17]
          Length = 329

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 116/274 (42%), Gaps = 18/274 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRL---VSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           M   +L+ +V + + A +  + A  L             ++   P     VL++   L V
Sbjct: 1   MDSRKLLLLVGALLVAGMTAVFARTLTAGSGAPQAGAAVIVAPPPETGPEVLVATRALPV 60

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G ++    L++  +P+E V   +         + +L G +VR  I  G P+    +V  G
Sbjct: 61  GTIIDATALKFQPWPKEMVGGAYYLKGQA--DLAKLQGTVVRYAITAGQPLTQGAVVQPG 118

Query: 118 N-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVL 171
           + G L++ L  G RA T+ +S  + V G + P D +D+V+ + ++             +L
Sbjct: 119 DRGFLAAALTPGMRAVTVPVSAQTGVAGFVFPGDRIDMVLTQDVAGGGDGPPLKVSETIL 178

Query: 172 SNIRVIAIDHNIDSDERVLVG------STATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
            N+RV+A D   DS             +T T+E TP  A+ L  AQ+V  LSL LR++AD
Sbjct: 179 RNVRVLATDQRTDSQSGEDGKTPIQTFTTVTVEATPKMAEQLAVAQTVGTLSLSLRALAD 238

Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259
             P   ++    +          +  G I     
Sbjct: 239 R-PDDLQNPAAVNAGPVADRASYVTGGDISRYQR 271


>gi|242315438|ref|ZP_04814454.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
 gi|242138677|gb|EES25079.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
          Length = 366

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++  + +    + A+V   +   L    +V   +     P + + V ++  DL  G+++ 
Sbjct: 1   MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104
              L W          G + +                          +L G L+R P+  
Sbjct: 57  DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116

Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159
           G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ +     
Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176

Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209
                  +R      + + +RV+A+         D+ +      T T E++   A+ +  
Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236

Query: 210 AQSVAKLSLVLRSIA 224
              +  LSL LRS A
Sbjct: 237 GAHLGALSLALRSFA 251


>gi|115376401|ref|ZP_01463638.1| Flp pilus assembly CpaB, putative [Stigmatella aurantiaca DW4/3-1]
 gi|310822673|ref|YP_003955031.1| Flp pilus assembly protein CpaB [Stigmatella aurantiaca DW4/3-1]
 gi|115366608|gb|EAU65606.1| Flp pilus assembly CpaB, putative [Stigmatella aurantiaca DW4/3-1]
 gi|309395745|gb|ADO73204.1| Flp pilus assembly protein CpaB [Stigmatella aurantiaca DW4/3-1]
          Length = 270

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 102/232 (43%), Gaps = 12/232 (5%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           V+   ++ +E         + V+++  D+  G V++  ++   + PE+ V    +     
Sbjct: 21  VAYSAIKKKEADVRRGWNLVPVVVAAQDIPEGSVISFEMISQRSVPEQFVTSSVVK---- 76

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGM 145
           P++   +    V VP+  GDP+   +         LS+ + K  RA T++   +++VGG 
Sbjct: 77  PDSANYVVNQKVLVPLQAGDPLLWSQFETTKAAERLSTKVQKKGRAVTIEAKSTTSVGGW 136

Query: 146 IKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAIDHNIDSD------ERVLVGSTATLE 198
           I+PNDHVDV+      +  +     +L N+ V+A      +       E     S  +L 
Sbjct: 137 IRPNDHVDVIGTFRDPQTDENVAVTLLQNVIVLATGKITGTTNVNLIPENQRDYSNISLL 196

Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
           + P +A+ LV A  +  L+L LR+  D++               G+  ++++
Sbjct: 197 VIPEEAEILVLASELGNLTLSLRNEDDVDLIEERGRATISTLLSGERTRVLE 248


>gi|319783875|ref|YP_004143351.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169763|gb|ADV13301.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 301

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/269 (20%), Positives = 106/269 (39%), Gaps = 25/269 (9%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQ-------TEEVITENPAKFINVLISKGDLAVGMV 60
            I ++ VF  ++   A   V             +         +F  ++++   L  GM 
Sbjct: 1   MIGIAAVFGAISIFAADFWVKSQAKADSEEKTSSIPAPVVPKVEFKTIVVANAPLRYGME 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +    L  + + +E+V  G    ++   A       +V  PI   +P+ L KL       
Sbjct: 61  LDRAQLSEIPWSQESVPQGAFTTINALLADGS---RVVLSPIEVNEPVLLTKLSGPNGRA 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-------------ERKPT 166
            LS+++  G RA T+     + VGG + P D VDVV+ R                    T
Sbjct: 118 TLSNMMTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQGAAGSTIT 177

Query: 167 VTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
             +V+++ +V+++    D  +    + ++ T+E+T   A+ +  A++V  LSL LRS ++
Sbjct: 178 SEIVVADAKVLSVGQGADERQTTPQISNSVTIEVTTDGAQKVALARTVGTLSLSLRSASE 237

Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKAGVI 254
                S  + +              AG +
Sbjct: 238 GADGKSGVTTISSFGGSVASNVQAAAGSV 266


>gi|323529160|ref|YP_004231312.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
 gi|323386162|gb|ADX58252.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
          Length = 363

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 97/262 (37%), Gaps = 31/262 (11%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF-INVLISKGDLAVGMVVTPN 64
            + + V+   A     +  + ++    + +  I  N  +  I V++   DL  G  ++ +
Sbjct: 15  WVLLFVAVCVAGGLTFLLYKYLNERETKLKAEIAANKVRTDIAVVVPARDLPAGTPLSSS 74

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
                    + V+D  +     P    +     +  P+ +G P+R   +        S +
Sbjct: 75  DFVSREIQGDLVYDDMVR----PENFDQYRASHLVKPVRRGLPLRAADIDALHGRDFSDV 130

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSNIRVIA 178
           LP G+RA T++I   ++   +++P + VDV  +         S+ +    +++++  V+A
Sbjct: 131 LPAGQRAVTVEIDTVNSTALLLRPGNRVDVYWIGKAFHQDHTSDDRRVAQLMMADALVLA 190

Query: 179 IDHNIDSDERVLVG--------------------STATLELTPMQAKALVAAQSVAKLSL 218
              ++   +                         +T TL++       +  AQ +  L L
Sbjct: 191 TGQDLRPRDAGEAAEHDQANANSSAMSRQEGMGYTTVTLQVPAEDVGRIALAQKIGGLRL 250

Query: 219 VLRSIADLNPSSSEDSDVWDVQ 240
           +LR+  D         +  DV 
Sbjct: 251 ILRNADDKATGGPALVEEKDVF 272


>gi|294102190|ref|YP_003554048.1| Flp pilus assembly protein CpaB [Aminobacterium colombiense DSM
           12261]
 gi|293617170|gb|ADE57324.1| Flp pilus assembly protein CpaB [Aminobacterium colombiense DSM
           12261]
          Length = 288

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 113/240 (47%), Gaps = 20/240 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R + ++VS +  ++AG++  + +  + ++    I     + ++V+++        +
Sbjct: 1   MK-KRGIFLIVSLLLGIMAGLLVYQQIRSYKLK----IARAERELVSVVVAARPKDAFSI 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNG 119
           +T   ++ V  P  ++  G      +  ++ E+ G    + + +GDP+   KL +D    
Sbjct: 56  ITAEDVKVVRMPRSSIPTG------EVLSLDEVVGKASMLALSEGDPVLKGKLSLDPEKL 109

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-KPTVTVVLSNIRVIA 178
           G++  LP G+ A  + I    A GG+++P D+VDV  V    +   PT  ++LS ++V+A
Sbjct: 110 GVAFQLPDGRVAIALPIDEVIAAGGLLRPGDYVDVFHVYREKDAVSPTSRLLLSRVKVLA 169

Query: 179 IDHNIDSDERVLV-------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           +   +   E             +A +E++P +A     AQS+  + L LR   +   + +
Sbjct: 170 LGGVLTRKEEKEGTKEKEMLARSAVVEVSPEEAAVAAWAQSLGSVWLALRPANEETLTPA 229


>gi|296158513|ref|ZP_06841343.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
 gi|295891081|gb|EFG70869.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
          Length = 365

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 99/287 (34%), Gaps = 44/287 (15%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQ-TEEVITENPAKFINVLISKGDLAVGMVVTPN 64
            + + ++ + A     +  + ++    +   ++        + V++   D  VG  ++  
Sbjct: 15  WVLLFLAVLVAGGLTFLLYKYLNDREKKLKADLDAHRVRAGVTVVVPAQDAPVGTPLSSG 74

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
                    + V+D  I      +  ++     +  P+ +G P+R   +        S +
Sbjct: 75  NFVAREIAGDLVYDDMIR----ADGFEQYRSSHLVKPVRRGLPLRAGDIDALRGRDFSDI 130

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------LSERKPTVTVVLSNIRVIA 178
           L  G RA T++I   ++   +++P + VDV  V         S+ K    +V+ N+ V+A
Sbjct: 131 LRPGTRALTVEIDTVNSTALLLRPGNRVDVYWVGKVFHENRTSDEKKVAQLVMPNVLVLA 190

Query: 179 IDHNIDSDERVLVG--------------------STATLELTPMQAKALVAAQSVAKLSL 218
              ++   +                         +T TLE+       +  AQ +  L L
Sbjct: 191 TGEDMRPRDAGEAAQQDQANANSSAMSRQTGMGYTTVTLEVPVDDVARIALAQKIGGLRL 250

Query: 219 VLRSIADLNPSSSEDSDVWD-------------VQEEGKEIQIIKAG 252
           +LR+  D        +   D                  + +++I  G
Sbjct: 251 ILRNSEDKGADGPSLAQESDVFIDPARGHVTSGTGPAPQTVEVISGG 297


>gi|148253053|ref|YP_001237638.1| hypothetical protein BBta_1513 [Bradyrhizobium sp. BTAi1]
 gi|146405226|gb|ABQ33732.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 309

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 100/245 (40%), Gaps = 20/245 (8%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
            +   S    +   V+  +      VL++   +A+G ++    + W       V  G++ 
Sbjct: 22  FIAWFSQMRSRPVAVVERSVESRPAVLVAARTIALGTLLRKEDIAWKDVMPGEVRPGYLM 81

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSA 141
                 +  E  G + R    + +P+   + V  G+   L+++L  G RA ++ +  + +
Sbjct: 82  RGQ--VSEAEFLGAISRRNFAQDEPLIASEFVKPGDRQFLAAVLKPGSRAISIFVDAAQS 139

Query: 142 VGGMIKPNDHVDVVMVRS------LSERKPTVTVVLSNIRVIAIDHNIDS--------DE 187
             GM  P D VDV++ +S         RK     +L ++RVIAID ++            
Sbjct: 140 AAGMALPGDRVDVILTQSFGEQATDPGRKTVSETMLRDVRVIAIDQSLTPSTNVAAAIST 199

Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLV---LRSIADLNPSSSEDSDVWDVQEEGK 244
              +  T TLEL   QA+AL+ A  + K  L    L  +A  +P    ++      +   
Sbjct: 200 EARIPKTVTLELLERQAEALMVAAQLGKFQLAVLPLERVAVEHPEEQTEAGPVWASDVSP 259

Query: 245 EIQII 249
            ++ +
Sbjct: 260 ALREV 264


>gi|162147490|ref|YP_001601951.1| pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545597|ref|YP_002277826.1| Flp pilus assembly protein CpaB [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786067|emb|CAP55649.1| putative pilus assembly protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533274|gb|ACI53211.1| Flp pilus assembly protein CpaB [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 292

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 32/271 (11%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64
           R++ IVV+    +   I+    +          +TE     + VL+++     G ++   
Sbjct: 4   RILLIVVAVSGLIGVVILGRLALHSGEKPVVAQVTEKKVPTVGVLVARKAEPAGALLQSG 63

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSS 123
            L+   FP   V  G I DV  P+    L G L+RVP+ +G  +  E ++    +G L++
Sbjct: 64  DLQTKDFPANLVPPGAIHDV--PSERAALTGGLLRVPVPEGGLLTNEAVLRVGDHGFLAA 121

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-------------------- 163
           +L  G  A ++ +   S V  +I+P D+VD+++   ++                      
Sbjct: 122 VLKPGDSAVSVGVDSVSGVADLIEPGDYVDLIVTHDVATADVANSGGGAGGNPGGDAGGG 181

Query: 164 KPTVTVVLSNIRVIAIDHNIDS----DERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           +     VLS +RV+AID  +      D R +   T TLE+TP QA+A+  A  + +L+L 
Sbjct: 182 RIAAETVLSALRVVAIDREMQHTSTVDSRGVGNRTVTLEVTPAQAEAVAVAGRLGRLTLA 241

Query: 220 LRSIADL-----NPSSSEDSDVWDVQEEGKE 245
           +RS+         P ++   DV      G E
Sbjct: 242 VRSLDQAGVAAFAPHTTWGGDVSPALAHGPE 272


>gi|220918103|ref|YP_002493407.1| Flp pilus assembly protein CpaB [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955957|gb|ACL66341.1| Flp pilus assembly protein CpaB [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 309

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 15/250 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R    V   V A++A +    L++ +       +         V++++ D+ V   +
Sbjct: 17  RKRRAAWGVTFLVVAILAAVGVALLLTRYMDAR---VAAVRVPTSGVVVAQVDIPVATPI 73

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
            P  L  V +P   +  G   +         L G +  VPI +G+ +   KL   G   G
Sbjct: 74  KPEWLGVVPWPVTALPPGAASEPA------ALVGQVAIVPITRGEAVLPSKLATAGARSG 127

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-TVVLSNIRVIAI 179
           L++LLP G RA  + +     V G + P D VDV++     E  P    +VL N++V+A+
Sbjct: 128 LATLLPAGMRAVAVRVDDVVGVAGFLHPGDRVDVIVTMQPREGVPYTSKIVLQNVKVLAV 187

Query: 180 DHNID----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
             +++      E+    + ATL +T  +++ L  + S  +L L LR++ D     ++   
Sbjct: 188 GQHLELRGKDAEKPNPVTVATLMVTGDESERLALSASKGQLLLSLRALGDEELVDTKGIT 247

Query: 236 VWDVQEEGKE 245
              +     +
Sbjct: 248 PPVLFASAAQ 257


>gi|78486069|ref|YP_391994.1| Flp pilus assembly CpaB [Thiomicrospira crunogena XCL-2]
 gi|78364355|gb|ABB42320.1| Flp (type IV) pilus assembly protein CpaB homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 296

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 104/266 (39%), Gaps = 36/266 (13%)

Query: 1   MKLTR--LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN------VLISK 52
           MKL     +   ++ + A++A ++    V     + E   +      +       ++++ 
Sbjct: 1   MKLKTSDWVVYGIAALSAILAIVLVYGYVQNRVAEAEANASTKTITVVEKPELHSIVVAS 60

Query: 53  GDLAVGMVVTPNILEWVAFP-EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
            D+  G  +  + ++ +  P E  V  G I +       Q   G +    I  G+ I  +
Sbjct: 61  RDIYRGEKIEADDVKVLNVPMEGLVVKGVIINP------QNAVGHVAHQKIYAGEWILAK 114

Query: 112 KLVDRGNG---GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-LSERKPTV 167
           KL          + +LL K +RA  + I   + + G+I P DHVDV+ V      ++   
Sbjct: 115 KLKLESQSRFQSVEALLEKTRRAIRLPIEPDTGLLGIISPGDHVDVISVFESADSKRMVS 174

Query: 168 TVVLSNIRVIAIDHNID-----------------SDERVLVGSTATLELTPMQAKALVAA 210
             +L NI V++I                      + +     S   L++   QA+ L  A
Sbjct: 175 RTILQNITVLSIGIENQMRASTADSEEDNQNLFANKQASNKKSMVALDVDTTQAEKLALA 234

Query: 211 QSVAKLSLVLRSIADLNPSSSEDSDV 236
            +V  + L+LR+ AD     ++  ++
Sbjct: 235 MNVGAIHLLLRNSADTELVDTKGVNL 260


>gi|78062907|ref|YP_372815.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
 gi|77970792|gb|ABB12171.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
          Length = 342

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 104/263 (39%), Gaps = 21/263 (7%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
               +VA  I   ++   +V               V ++  DL  G+++  N L W   P
Sbjct: 7   LAVLVVAAGIGAFILRELYVAASTPSVATETDQARVRVAAADLPEGLLLRDNDLAWKRMP 66

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRA 131
              V  G   +        +L G L+R  +  G PIR+E ++  G    L++ L  G RA
Sbjct: 67  RAQVPAGAFVESQ---PGADLKGALLRNHVGAGAPIRVENVIPAGAPDFLAAALQPGMRA 123

Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIRVIAIDHN---- 182
            ++ +   S   G+I+P D VDV++ + +     +        V+   RV+A+       
Sbjct: 124 ISVPVDDVSGNAGLIQPGDFVDVLLTQQIGGSATSPGTFEAETVVRRARVLAVGSEFQRA 183

Query: 183 ---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
                + +      T TLE+ P  A+ ++ A  +  LSL LRS A  +       D    
Sbjct: 184 KAPASAPDATARARTVTLEVAPRTAQVVLVATRLGSLSLALRSFATSDRRQPAGGD---- 239

Query: 240 QEEGKEIQIIKAGVIVNKDGEGI 262
            E+  + Q + AG +     E  
Sbjct: 240 -EQEPDTQPVWAGDVSRAAREAA 261


>gi|115358170|ref|YP_775308.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD]
 gi|115283458|gb|ABI88974.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD]
          Length = 342

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 98/246 (39%), Gaps = 21/246 (8%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              L   V+     + A I+    VS           +     + V ++  DL  G+++ 
Sbjct: 2   PKPLRMAVLIIAAGIGAFILRQLYVSASTPPPPGNTAD-----VRVRVAAADLPEGLLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121
            N L W       V  G   +        +L G L+R  +  G PIR + ++  G    L
Sbjct: 57  DNDLAWKPMARAQVPAGAFVESQ---PGADLKGALLRSRVEAGAPIRADNVISAGAPDFL 113

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIRV 176
           ++ L  G RA ++ +   S   G+I+P D VDVV+ + +     T        V+   RV
Sbjct: 114 AAALQPGMRAISVPVDDVSGNAGLIQPGDFVDVVLTQQIGGSATTPGTFEAETVVRRARV 173

Query: 177 IAIDHN-------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           +A+            + +  +   T TLE+ P  A+ ++ A  +  LSL LRS A  +  
Sbjct: 174 LAVGSEFQRAKGPASAPDAPVRARTVTLEVAPRTAQVVLVATRLGSLSLALRSFATSDRR 233

Query: 230 SSEDSD 235
            +   D
Sbjct: 234 QAAGGD 239


>gi|255658703|ref|ZP_05404112.1| Flp pilus assembly protein CpaB [Mitsuokella multacida DSM 20544]
 gi|260849090|gb|EEX69097.1| Flp pilus assembly protein CpaB [Mitsuokella multacida DSM 20544]
          Length = 358

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 96/248 (38%), Gaps = 43/248 (17%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           +V +GV +++ G++    +S    +  E   +     + V+ +K D+    VV  ++L+ 
Sbjct: 24  VVAAGVVSILLGLMVYLAMSGDDQKAAE---KPQTNLVQVVAAKQDIPERTVVKEDMLKV 80

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPK 127
           V  P E V +G   DV       +         I +GD +   K+ VD    G + ++P 
Sbjct: 81  VEVPSELVPEGAFHDVA------DAIDHPTSTAIQQGDIMTSRKVYVDIRMAGFTGIIPP 134

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE 187
             RA T+ I+  + V G   P D+VD++++    E      ++L ++ ++ I+   D   
Sbjct: 135 DCRAVTIPINDVTGVSGFAHPGDYVDIMVITGTKENGINGRIILQDVLLLGINRTADLPN 194

Query: 188 RVLVGS---------------------------------TATLELTPMQAKALVAAQSVA 214
                S                                 TAT+ L P  A  L A     
Sbjct: 195 TPTGDSSKKDGSQSDKQDASSGTANVGSVNTKASSDTMATATVALKPADALKLAAESQEG 254

Query: 215 KLSLVLRS 222
            L LVLR 
Sbjct: 255 TLYLVLRP 262


>gi|304311184|ref|YP_003810782.1| Flp pilus assembly protein [gamma proteobacterium HdN1]
 gi|301796917|emb|CBL45130.1| Flp pilus assembly protein [gamma proteobacterium HdN1]
          Length = 283

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 15/238 (6%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
            +    +     Q  + I +   + I V+++  DL +G VVT         P+  V    
Sbjct: 26  FLTQNYIKTEVTQRNKAIDQQR-EAIQVVVASADLNIGDVVTLKNAVVRDIPKTFVPSEA 84

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
           +      N    L+G  ++  +  G+ I    +      G+ SLL  G+RA T+ +    
Sbjct: 85  VT---PANFAATLEGRQLKYKVKYGEVILPMHVSSTKIEGIVSLLEPGERAITIPVGKED 141

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI---------DSDERVLV 191
            + G ++P   VD+ +              L  ++VIA    +         D  +    
Sbjct: 142 TISGFLRPGSRVDLFLTLK-DGAVSRTAPFLQRVKVIATGTELNDGIPRELKDPKKLQKT 200

Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQII 249
            S  TL +TP+QA  L+ +QSV  +++VLR   D +    +D    D   + +++  +
Sbjct: 201 FSDVTLAVTPVQATKLIHSQSVGDIAMVLRRPEDKSTE-FDDYATIDNLLDSRQVAPV 257


>gi|87199533|ref|YP_496790.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444]
 gi|87135214|gb|ABD25956.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444]
          Length = 260

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 13/217 (5%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
             A    ++++   +  G  +T        +P   V  G   ++            +   
Sbjct: 2   KRASLTRIVVASQAIEFGKPLTNTNTRLADWPAGTVPPGAFTNLA-----DAQRNRIAMQ 56

Query: 101 PILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
            I  G+PI   ++        L++ LP G  A ++ IS  + V G ++P D VD+++ R 
Sbjct: 57  AIAAGEPILASRVTGTDGRATLAAALPPGMVAVSLPISDVTGVSGFVRPGDLVDIILTRQ 116

Query: 160 LSERKP-----TVTVVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSV 213
           +             V+L  + V+ ID   D S    +VG TAT+++  + A+ L  A+ +
Sbjct: 117 IPGEGAGQQDKMTDVILRQVAVLGIDQVADKSKTEAVVGKTATVQVDTLGAQKLALAREL 176

Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
             LSL LRS+A +  +      V      G+++ I +
Sbjct: 177 GTLSLGLRSLASVEDTGPT-RTVLARDLAGRQLFIAR 212


>gi|172062958|ref|YP_001810609.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
 gi|171995475|gb|ACB66393.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
          Length = 342

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 21/246 (8%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              L   V+     + A I+    VS           +     + V ++  DL  G+++ 
Sbjct: 2   PKPLRMAVLIIAAGIGAFILRQLYVSASTPPPPGNTAD-----VRVRVAAADLPEGLLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121
            N L W +     V  G   +        +L G L+R  +  G PIR + ++  G    L
Sbjct: 57  DNDLAWKSMARAQVPAGAFVESQ---PGADLKGALLRNRVDAGAPIRADNVISAGAPDFL 113

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIRV 176
           ++ L  G RA ++ +   S   G+I+P D VDVV+ + +     T        V+   RV
Sbjct: 114 AAALQPGMRAISVPVDDVSGNAGLIQPGDFVDVVLTQQIGGSATTPGTFEAETVVRRARV 173

Query: 177 IAIDHN-------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           +A+            + +  +   T TLE+ P  A+ ++ A  +  LSL LRS A  +  
Sbjct: 174 LAVGSEFQRAKGPASAPDAPVRARTVTLEVAPRTAQVVLVATRLGSLSLALRSFATSDRR 233

Query: 230 SSEDSD 235
            +   D
Sbjct: 234 QAAGGD 239


>gi|108759025|ref|YP_632818.1| putative Flp pilus assembly protein CpaB [Myxococcus xanthus DK
           1622]
 gi|108462905|gb|ABF88090.1| putative Flp pilus assembly protein CpaB [Myxococcus xanthus DK
           1622]
          Length = 271

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 102/232 (43%), Gaps = 12/232 (5%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           ++   ++ +E         + V+++  D+  G V+T  ++   + PE+ V    +     
Sbjct: 21  IAYSAIKKKEADVRRGWNLVPVVVAAQDVPEGTVITFEMISQRSVPEQFVTSSVVR---- 76

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGM 145
           P++   +    V V +  GDP+   +         LSS + K  RA T++   +++VGG 
Sbjct: 77  PDSASYIVNQKVLVALQAGDPLLWSQFETTKAAERLSSKVQKKARALTIEAKHTTSVGGW 136

Query: 146 IKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAIDHNIDSD------ERVLVGSTATLE 198
           I+PNDHVDV+      +  +     +L N+ V+A      +       E     +  +L 
Sbjct: 137 IRPNDHVDVIGTFRDPQTDENVAVTLLQNVIVVATGKITGTTNVNLIPENQREYNNISLM 196

Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
           + P +A+ LV A  + +L+L LR+  D++               G+  ++++
Sbjct: 197 VLPEEAEILVLAVELGQLTLSLRNEDDVDLIEERGRATISTLLSGERTRVLE 248


>gi|251789645|ref|YP_003004366.1| Flp pilus assembly protein CpaB [Dickeya zeae Ech1591]
 gi|247538266|gb|ACT06887.1| Flp pilus assembly protein CpaB [Dickeya zeae Ech1591]
          Length = 308

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 113/295 (38%), Gaps = 41/295 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK+   + + V+ + A V  +I    +      Q        P +   VL++  DL+ G 
Sbjct: 1   MKINSTLLLSVALIAAGVMALIVRSQLPGTPAAQQTPAPAPIPVEKTAVLVTARDLSPGD 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            +  + + W     +         +   +   +L G  +R  I  G P+    +V     
Sbjct: 61  FIDGSAVRWQE--TDQPVSRTFYFIRGKDQESQLYGATLRGKIPAGTPLNNNSVVRPNEP 118

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------ 166
           G ++++L  G RA ++  S+ ++  G++   D+VD+++     +                
Sbjct: 119 GFIAAVLRPGMRAISIPTSVVASNAGLVSAGDYVDIILSLRRDDEVALQPTSQQPVPPPV 178

Query: 167 --VTVVLSNIRVIAIDHNIDS----------------------DERVLVGSTATLELTPM 202
                V  N+RV+A+++  D+                       +R  +  + TLE TP 
Sbjct: 179 VGAQTVARNLRVLALNNQTDAITSMRPRQDINGAEPAQNTPQGRQRTPIYQSITLEATPK 238

Query: 203 QAKALVAAQSVAKLSLVLRSIADL-NPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256
           QA+ L  A+ V  L +  RS  D  + + ++ +        G   +++ +G  V 
Sbjct: 239 QAEVLTVAKEVGLLQMAQRSALDTSDDAEAQTTVTTLKDTTGIYSKMVSSGHQVK 293


>gi|325111215|ref|YP_004272283.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM
           5305]
 gi|324971483|gb|ADY62261.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM
           5305]
          Length = 349

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 87/255 (34%), Gaps = 25/255 (9%)

Query: 1   MK---LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           M+      +  I++  +  L+A  I             E           V ++  D+  
Sbjct: 1   MRVLTPAFITLIMLIVIGGLIAVYIGKSFF------YTEPAPPQEISTRLVPMAGSDIPA 54

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G ++T + +      E+ +              + + G      I +  PI    L   G
Sbjct: 55  GTLITSDHIVRGRLREDKM------TRETILNDEAIIGRYSLTDIKQAQPILTSDLYAPG 108

Query: 118 NGGLSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVL 171
                  L  G +A T+ +   +S V G+I+P D+VDV +  S        R      V 
Sbjct: 109 ERP-PLELEPGMQAVTVSLGDSTSVVDGLIEPGDYVDVHLTVSDDLSDSRYRGGFTMTVF 167

Query: 172 SNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
             IRV+A++            +T T ELTP Q+  ++ AQ    ++    S     P   
Sbjct: 168 KGIRVLAMNRLTQPTNISRGANTVTFELTPSQSNIILEAQRHGTIT---VSYNPDGPGDG 224

Query: 232 EDSDVWDVQEEGKEI 246
             +     +    EI
Sbjct: 225 GVAVASSDRAYFDEI 239


>gi|76810330|ref|YP_333339.1| CpaB family Flp pilus assembly protein [Burkholderia pseudomallei
           1710b]
 gi|76579783|gb|ABA49258.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           1710b]
          Length = 348

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +   +    A++ GI A  L                   + V+++   L  G  +  + L
Sbjct: 57  IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 116

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P      G   +         + G +    I    P+   +L+     GL+  + 
Sbjct: 117 KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 164

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177
            G+RA  + +  ++AVG  ++P + VDV +                +    ++LS +RV+
Sbjct: 165 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 224

Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           +        +           TA L +   Q  AL  A++  +L L LRS  D + ++  
Sbjct: 225 SFGDATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIAAQT 284

Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261
            + +      G   Q     V+    G G
Sbjct: 285 VA-IRAPAGAGPSNQAATGLVLSELSGSG 312


>gi|91777218|ref|YP_552426.1| putative Flp pilus assembly CpaB [Burkholderia xenovorans LB400]
 gi|91689878|gb|ABE33076.1| Putative Flp pilus assembly CpaB [Burkholderia xenovorans LB400]
          Length = 363

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 99/273 (36%), Gaps = 31/273 (11%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ-TEEVITENPAKFINVLISKGDLAVGMVV 61
               + + ++ + A     +  + ++    +   ++        + V++   D+ VG  +
Sbjct: 12  ANSWVLLFLAVLVAGGLTFLLYKYLNDREKKLKADMDAHRVRAGVTVVVPAQDVPVGTPL 71

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           +           + V+D  I      +  ++     +  P+ +G P+R   +        
Sbjct: 72  SSGDFVAREIAGDLVYDDMIR----ADNFEQYRSSHLVKPVRRGLPLRAGDIDALRGRDF 127

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------LSERKPTVTVVLSNIR 175
           S +L  G RA T++I   +A   +++P +HVDV  V         S+ K    +V+ N+ 
Sbjct: 128 SDVLRPGTRALTVEIDTVNATALLLRPGNHVDVYWVGKVFHEDHTSDEKKVAQLVMPNVL 187

Query: 176 VIAIDHNIDSDERVLVG--------------------STATLELTPMQAKALVAAQSVAK 215
           V+A   ++   +                         +T TLE+       +  AQ +  
Sbjct: 188 VLATGEDMRPRDAGEAAQQDQANANSSAMSRQAGMGYTTVTLEIPVDDVARVALAQKIGG 247

Query: 216 LSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQI 248
           L L+LR+  D        +   DV  +    ++
Sbjct: 248 LRLILRNSEDKGADGPSLAQESDVFIDPARGRV 280


>gi|296158793|ref|ZP_06841622.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
 gi|295890998|gb|EFG70787.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1]
          Length = 316

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 28/243 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M     +   V    ALV G+ A  L           +T        V+++   LA G  
Sbjct: 1   MPNLTRIFAGVLIAVALVLGLFAWTLSRR---PAPVAVTPATHASFPVVVATRALAPGKP 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + L   + P     +G   +        +L G +    I    P+   +L    + G
Sbjct: 58  ITVDDLRIQSLPIN--PNGAFTEPA------QLAGRVPNAEIGADSPVLESQL----SSG 105

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVL 171
           L+  +  G+RA  + +   +AVG  ++P + VDV                  +    +++
Sbjct: 106 LAERVEAGERALAVRVDEGNAVGNRLRPGNFVDVFFTLKRDGGSMGNGGEIDRTQARLLM 165

Query: 172 SNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           S +RV+A  +   S +          TA L +       L  A+S  +L   LR+  D  
Sbjct: 166 SKVRVLAFGNATASGDSAGDPNGMVRTAVLAVPVADVDRLTLAESAGRLIFALRNPKDTE 225

Query: 228 PSS 230
              
Sbjct: 226 VVD 228


>gi|87312293|ref|ZP_01094391.1| probable pilus assembly protein CpaB [Blastopirellula marina DSM
           3645]
 gi|87284997|gb|EAQ76933.1| probable pilus assembly protein CpaB [Blastopirellula marina DSM
           3645]
          Length = 363

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +A   +S       +  T    +  N+ ++  D+ +   ++P +++   +P++ V +G +
Sbjct: 1   MASIGISQVLESKSQQSTAPQMEMENIFVAIEDIDINEQLSPELIKLEPWPKDKVPEGAV 60

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISS 140
            +      ++E++    RV +  G+PI   KL     + G S ++PKG R  ++ ++  +
Sbjct: 61  TN------LEEIENRRPRVRLYAGEPILERKLFGSNEDKGASKMIPKGFRVHSVRVTAET 114

Query: 141 AVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIAIDHN----IDSDERVLVGST 194
           +  G+I P D VDV++    S    K     +L N+RV A++       DS+   +   T
Sbjct: 115 SASGLILPGDRVDVLVYLRNSGSINKTLTRTILKNVRVFAVNEQTHRETDSEGNTITAKT 174

Query: 195 ATLELTPMQAKALV 208
            +L + P Q + L+
Sbjct: 175 VSLLVKPSQVEVLM 188


>gi|218661134|ref|ZP_03517064.1| pilus assembly protein [Rhizobium etli IE4771]
          Length = 205

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 91/205 (44%), Positives = 130/205 (63%), Gaps = 4/205 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ V A +AG++AMR+     V T+          +NVL+S G+LAVG  
Sbjct: 1   MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIEKEPTVNVLVSSGNLAVGQR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + W+A+P+  V  G I +  +P+A+++L G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LEEGSVHWMAWPQGGVVPGLITEAEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR  +E  K     VLSN+RV+AI
Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180

Query: 180 DHNI---DSDERVLVGSTATLELTP 201
           D  I   D   + +VG+TATLELTP
Sbjct: 181 DQQIQEKDDGSKAVVGTTATLELTP 205


>gi|148657460|ref|YP_001277665.1| SAF domain-containing protein [Roseiflexus sp. RS-1]
 gi|148569570|gb|ABQ91715.1| SAF domain [Roseiflexus sp. RS-1]
          Length = 260

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 90/258 (34%), Gaps = 26/258 (10%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEE-------VITENPAKFINVLISKGD 54
           + +  + + +  + A+ AG +   ++    V   E                I + ++   
Sbjct: 3   RRSGWILLTLGVLLAIGAGALVYVVLQQQSVAAAEQARREVLAQQAPQVPTIKLPVAARS 62

Query: 55  LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114
           L  G  + P+ +    FP + V    + +        +++  ++   + +GDP +    V
Sbjct: 63  LTPGNAIGPDDILLKDFPVDLVPVNALTE------TTQIESRVLARAVGQGDPFQRSMFV 116

Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----------RSLSER 163
                 +S  +P G       I        +I+  D +D+ +                  
Sbjct: 117 GERGESVSQEIPPGYVLFAFPIVDLLGQSNLIEDGDRIDLYLTLNTPLDASAAPAPDQAT 176

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATL-ELTPMQAKALVAAQSV-AKLSLVLR 221
            PT  + L N++V+ +      +      +TA L  + P  A  L   +     +   LR
Sbjct: 177 APTTALTLQNVQVLKVLRQAPREGETKTPATALLCAMRPEDAIILKHIKDTGGTIDFALR 236

Query: 222 SIADLNPSSSEDSDVWDV 239
           S  D  P ++E  ++ ++
Sbjct: 237 SPLDTEPFTTEPLNLPEL 254


>gi|152994346|ref|YP_001339181.1| SAF domain-containing protein [Marinomonas sp. MWYL1]
 gi|150835270|gb|ABR69246.1| SAF domain protein [Marinomonas sp. MWYL1]
          Length = 309

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 109/275 (39%), Gaps = 31/275 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF--INVLISKGDLAVG 58
           MK++ +  I  + VFA+   ++   L S        V      K     VL +  DL  G
Sbjct: 1   MKVSSVFFISGALVFAIGGALLVRVLASTPPPPAPVVKAAPAPKPVFTPVLAASKDLVPG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +  + ++W+A  ++     +       + +  + G  VR P+ KGD +    +V  G+
Sbjct: 61  DFIDNSAVQWLAVDKQYESHSYFLKG--VDQVDAVFGATVREPVAKGDVLGSRVVVLPGD 118

Query: 119 GG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------ 165
            G ++S+L  G RA  +     ++  G++   D VDVV+     +               
Sbjct: 119 AGFIASVLESGMRAVAIPADAVTSNAGLVSAGDRVDVVLGLKRDQENGGEADPMASIELP 178

Query: 166 --TVTVVLSNIRVIAIDHNIDSDERVLV------------GSTATLELTPMQAKALVAAQ 211
                 +L N+RV+A++  ++   +                 T TLE+ P   + L  A+
Sbjct: 179 KLASQTLLRNVRVLALNDAVEEMAKEKPTEEKSGAKKRKFYETVTLEVFPKDVERLTVAR 238

Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI 246
            +  L L LRS+ +     S D +    ++E   +
Sbjct: 239 EIGVLQLALRSVRNEMLVGSSDENRIAARDEVTTL 273


>gi|91783010|ref|YP_558216.1| putative signal peptide protein, CpaB like [Burkholderia xenovorans
           LB400]
 gi|91686964|gb|ABE30164.1| Putative signal peptide protein, CpaB like protein [Burkholderia
           xenovorans LB400]
          Length = 316

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 28/243 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M     +   V    ALV G+ A  L           +T        V+++   LA G  
Sbjct: 1   MPNLTRIFAGVLIAVALVLGLFAWTLSRR---PAPVAVTPAVHASFPVVVATRALAPGKP 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + L   + P     +G   +        +L G +    I    P+   +L    + G
Sbjct: 58  ITVDDLRIQSLPIN--PNGAFTEPA------QLAGRVPNAEIGADSPVLESQL----SSG 105

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVL 171
           L+  +  G+RA  + +   +AVG  ++P + VDV                  +    +++
Sbjct: 106 LAERVEVGERALAVRVDEGNAVGNRLRPGNFVDVFFTLKRDGGSMGNGGEIDRTQARLLM 165

Query: 172 SNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           S +RV+A  +   S +          TA L +       L  A+S  +L   LR+  D  
Sbjct: 166 SKVRVLAFGNATASGDSAGDPNGMVRTAVLAVPVADVDRLTLAESAGRLIFALRNPKDTE 225

Query: 228 PSS 230
              
Sbjct: 226 VVD 228


>gi|301165541|emb|CBW25112.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ]
          Length = 271

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 112/284 (39%), Gaps = 37/284 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M       + ++ + A+ A  +    +     +    I +   K  +V+I+K D+    +
Sbjct: 1   MNTR---ALTLALIIAVFAMFMVYTYIDDEKTK----IIKKYGKEQSVVIAKVDIKELEL 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +  + +   + P   V +     +      +E+   +  VPILKG+ I   ++       
Sbjct: 54  IDDSKVTVTSMPSNFVHEKAFKTI------KEIQNTVATVPILKGEQITKPRVSWPDERS 107

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176
           GLS  +  GKRA ++D+S  ++VG +IKP D VD++     +  +     +  +L ++ +
Sbjct: 108 GLSRQVAVGKRAISLDVSERASVGKLIKPGDRVDILAGIDYAGGRKDLQKMKTILQDVLI 167

Query: 177 IAIDHNIDSDERVLVGS-----------------TATLELTPMQAKALV--AAQSVAK-L 216
           ++   +I  +  ++                    T TLEL P + + LV   + +     
Sbjct: 168 LSTGKSISGNLPIIGVKTPRVIKKMKLNTYSDYGTVTLELDPYEVQKLVFILSYNSGTPP 227

Query: 217 SLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGE 260
            L LR+  D      + + ++D+  E      I         G 
Sbjct: 228 YLALRNNTDKEVVRIKSTKLFDILGEDASEAKIFFSEKYKSQGN 271


>gi|302343420|ref|YP_003807949.1| Flp pilus assembly protein CpaB [Desulfarculus baarsii DSM 2075]
 gi|301640033|gb|ADK85355.1| Flp pilus assembly protein CpaB [Desulfarculus baarsii DSM 2075]
          Length = 279

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 89/211 (42%), Gaps = 12/211 (5%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
               +   E   +   ++++  DL  G+ ++   L    +P E    G         A++
Sbjct: 31  AHKAQQEAERRVRTAPLVVAAVDLPAGLELSAGRLAVAQWPVEARPPGHF------GAVK 84

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
            L G +++ P++KG+P+   KL       GL++ +  G RA T+       V G +K  D
Sbjct: 85  PLLGRVLQQPVVKGEPLLAGKLSPEGAAAGLAAAIKPGWRAVTISADEVVGVAGYLKVGD 144

Query: 151 HVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDERVLV---GSTATLELTPMQAK 205
            VDV+         ++    + L ++ V+A+ H  + D +      G   TL   P  A+
Sbjct: 145 RVDVIATVKGLDQGKEAVARLALQDLEVLAVSHQAEQDGKKPPKLKGQVLTLLARPADAE 204

Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
            L  A    K+ L LR+  D  P+ +  + +
Sbjct: 205 RLALAAGEGKILLALRNRQDRQPALTRGARL 235


>gi|156744073|ref|YP_001434202.1| SAF domain-containing protein [Roseiflexus castenholzii DSM 13941]
 gi|156235401|gb|ABU60184.1| SAF domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 267

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 89/258 (34%), Gaps = 26/258 (10%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEE-------VITENPAKFINVLISKGD 54
           + +  + + +  + A+ AG +   ++    V   E                I + ++   
Sbjct: 10  RRSGWILLTLGAILAIGAGALVYLVLQQQSVAAAEQARREVLAQQAPQVPVIKLPVAARP 69

Query: 55  LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114
           LA G  + P+ +    +P   V    + D        +++  ++   + +GDP +    V
Sbjct: 70  LAPGNTIGPDDILLKDYPVNLVPVNALTD------TTQIENRILARTVGQGDPFQKSMFV 123

Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT------ 168
                 +S  +P G       I        +I   D +D+ +  +               
Sbjct: 124 GERGESISQEIPPGYVLFAFPIVDLLGQSNLIADGDRIDLYLTLNTPLNAAATPAPDQPT 183

Query: 169 -----VVLSNIRVIAIDHNIDSDERVLVGSTATL-ELTPMQAKALVAAQSV-AKLSLVLR 221
                + L N++V+ +  +   +      +TA L  + P  A  L   +     +   LR
Sbjct: 184 TPTTALTLQNVQVLKVLRSEPREGATKTPATALLCAMRPEDAIILKHIKDTGGTIDFALR 243

Query: 222 SIADLNPSSSEDSDVWDV 239
           S  D  P ++E  D+ ++
Sbjct: 244 SPLDTEPFTTEPLDLPEL 261


>gi|269926136|ref|YP_003322759.1| Flp pilus assembly protein CpaB [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789796|gb|ACZ41937.1| Flp pilus assembly protein CpaB [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 258

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 29/256 (11%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M+    ++ ++V    A  AG+  + +             +   K + V+++  D+A G 
Sbjct: 1   MRKRIGILLMIVGLALAAFAGLTVINVTR------AAREAKPVIKQVQVVVAAQDIAQGS 54

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            +T ++LE   FP +      +      +++ +         I+KG  I    L D    
Sbjct: 55  PITASMLETKPFPADFAPSEAV------SSINDAVNRYSATNIVKGQIITRPLLSDTKQV 108

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR------------SLSERKPT 166
           G L+  +PKGK A  +  S   +  G I+P D VDV++              +  E + T
Sbjct: 109 GKLALSIPKGKVAFALPASDLLSGNGQIQPGDRVDVLVTFFVKMTSIGPDGQTSDEERAT 168

Query: 167 VTVVLSNIRVIAI-DHNIDSDERVLVGSTATLELTPMQAKALVAAQSV--AKLSLVLRSI 223
               L ++ V+ +      SD          L + P QA  L  A+    A + L LR  
Sbjct: 169 TQTTLQDLEVLDVLGTGAGSDGGNAKSPAVVLLVDPQQAVTLKLAKDSDKAVIDLALRGS 228

Query: 224 ADLNPSSSEDSDVWDV 239
           +D +     D +  D 
Sbjct: 229 SDDHKQHETDGETEDS 244


>gi|281356955|ref|ZP_06243445.1| Flp pilus assembly protein CpaB [Victivallis vadensis ATCC BAA-548]
 gi|281316513|gb|EFB00537.1| Flp pilus assembly protein CpaB [Victivallis vadensis ATCC BAA-548]
          Length = 264

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 96/237 (40%), Gaps = 21/237 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   L  ++ + VF L+A +++        ++ E+      ++ + ++    D A    
Sbjct: 1   MRQKFL--LLGAVVFGLLAFVLSY-----QQLEAEKRRIIGDSETVVLIKLAVDKAPNEE 53

Query: 61  VTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           + P  L  V +P     +   +      + +  + G  +   +  G  ++   L      
Sbjct: 54  LQPGDL--VRYPVRRSREMQSMSREIPWSEVSRVIGRQLETTMTAGQVLQSTDLKPMTQR 111

Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVLS 172
            G + ++  G RA  + +   S+V  +I+PND VDV+      + +           +L 
Sbjct: 112 QGFNGVIRPGMRAVAIPVDPVSSVNNLIQPNDDVDVIGTFRFPDVRGDSSLDTVTLTILQ 171

Query: 173 NIRVIAIDHNIDSDE----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +++V+A+ +   S            T TL L P + + ++ A    KL+L LR+  D
Sbjct: 172 DVKVLAVGNRWGSASLDPAGARSYGTVTLLLYPEEVEMIIFASQKGKLNLSLRNFED 228


>gi|50119733|ref|YP_048900.1| hypothetical protein ECA0788 [Pectobacterium atrosepticum SCRI1043]
 gi|49610259|emb|CAG73702.1| putative exported protein [Pectobacterium atrosepticum SCRI1043]
          Length = 314

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 103/272 (37%), Gaps = 44/272 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+     +  + V A +  ++    +S        ++ + P + + VL++   L  G  
Sbjct: 1   MKVNSTYVLSGALVLAGIVALMVRSHLSSEPPAPPPMVVKVP-EKVAVLVAAKALHPGDF 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +    L W     +       + +   ++   L G  +R  + +G P+    LV     G
Sbjct: 60  IDSASLRWDE--TDKPVSRTFNFIRGKDSQSLLLGATLRETVAEGTPLTSNVLVKPNEPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------- 166
            ++++L KG RA ++  S  ++  G++   D VDV++     ++                
Sbjct: 118 FVAAVLRKGMRAISVPTSAIASNAGLVSAGDRVDVILSMKRDDQAELPPSRNQPVVMPLL 177

Query: 167 -VTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199
               ++ ++RV+A++    +                            R     T TLE+
Sbjct: 178 ASQTIVRDLRVLALNDKTGTPIYPRFDVAEDGTVLDATAKSRESAVRSRPTTYQTVTLEV 237

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           TP QA+AL  A+ +  L L LRS    + +  
Sbjct: 238 TPQQAEALAVAKELGMLHLALRSATQDDIADP 269


>gi|255597441|ref|XP_002536774.1| conserved hypothetical protein [Ricinus communis]
 gi|223518588|gb|EEF25608.1| conserved hypothetical protein [Ricinus communis]
          Length = 302

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 113/271 (41%), Gaps = 22/271 (8%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++ ++ I++  V A++  +I   +V+       +         + + +S  DL  G+++ 
Sbjct: 1   MSNIIKILLLLVGAVLIALIVRTVVASISHPAAQA-----VSTVKIRVSAADLPQGLLLR 55

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121
            + L W   P  NV    I  V       EL G L+R     G  +  + ++     G L
Sbjct: 56  DDDLAWKDVPAGNVPAAAI--VANAPNAIELKGALLRHAAAAGTVLGPDDVILPSAPGFL 113

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------KPTVTVVLSNIR 175
           ++ L    RA ++ I   S   G+I+P D+VD+++ + +  R        +   V+  +R
Sbjct: 114 AATLKPDMRAVSVAIDDVSGNAGLIQPGDYVDLLLTQQMDHRTDSPDLAVSSETVVERVR 173

Query: 176 VIAIDHN------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           V+A+          D+ +      T TLE+TP  A+ +  A  +  LS  LRS A  +  
Sbjct: 174 VLAVGSELSRPKTSDAPDANNRARTVTLEVTPHMAEVVSVAARLGSLSFALRSFAKASRE 233

Query: 230 SSEDSDVWDVQEEGKEIQIIKAGVIVNKDGE 260
           +   S V          + + AG I +   E
Sbjct: 234 ADAASAVPASGPLQA--RPVWAGDISSAVRE 262


>gi|187923644|ref|YP_001895286.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
 gi|187714838|gb|ACD16062.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
          Length = 316

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 27/242 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M     +   V    ALV G+ A  L           +T        V+++   L  G  
Sbjct: 1   MPNLTKILAGVLIAVALVLGLFAWSLSRR---PALVAVTPATQASFRVVVATHTLPAGKA 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + +   + P     +G   D        +L G +    I    P+   +L    + G
Sbjct: 58  ITVDDVRVQSLPIN--PNGAFTDPA------QLAGRVPNAEIGAESPVLESQL----SSG 105

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTVVLS 172
           L+  +  G+RA  + +   +AV   ++P + VDV                 +    +++S
Sbjct: 106 LAERVEPGERALAVRVDEGNAVANRLRPGNFVDVFFTLKRDASIGNGGEIDRTQARLLMS 165

Query: 173 NIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
            +RV+A  +   S +          TA L +       L  A+S  +L   LR+  D   
Sbjct: 166 KVRVLAFGNATASGDSAGDPNGMVRTAVLAVPVADIDRLTLAESAGRLIFALRNPKDPEV 225

Query: 229 SS 230
             
Sbjct: 226 ID 227


>gi|239817411|ref|YP_002946321.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110]
 gi|239803988|gb|ACS21055.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110]
          Length = 331

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 87/270 (32%), Gaps = 35/270 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN-------PAKFINVLISKG 53
           M     +   +  + A+  G  A  L      +T    T          A    V+++  
Sbjct: 1   MINLTKIVAAILVLLAIALGGYAWMLGRQAPAKTAVTATAPSEQPQSQQAPTYPVVVAAK 60

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
            L  G  +  + L            G   +V          G +  + + +G P+   +L
Sbjct: 61  PLPAGQAIPADALRVERLTVN--PAGAFQEVA------TATGRVPVIDLSEGSPLMDNQL 112

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVV 170
           V     GL+  + +G+RA  +       VG  I+P D VDV +          +    ++
Sbjct: 113 V----SGLALRVGEGERAVAIKADEIMGVGNKIQPGDFVDVFITLKSDGKDVDRSQARLL 168

Query: 171 LSNIRVIA-------------IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
           LS  RV+A              D      +R     TA L ++      L    +  +L 
Sbjct: 169 LSRKRVLAFGSASVDGLPSKTTDKQQQQAQRTEAPRTAVLAVSVDDVNRLTIGDATGRLM 228

Query: 218 LVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           L LR+  D+     +         +   ++
Sbjct: 229 LALRNPNDVAEPDPKLFADLPTALQPASVR 258


>gi|317122047|ref|YP_004102050.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM
           12885]
 gi|315592027|gb|ADU51323.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM
           12885]
          Length = 236

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 103/246 (41%), Gaps = 18/246 (7%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   +  +++  +  L   ++    +                  + V+++   +     +
Sbjct: 3   RGRIVRYLLLPVLVGLAVTVLVAFYIR------VPAGQAESGPRVPVVVATRPVPAQTRL 56

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
             ++L     P + V  G I        +++  G + +VP+ +G+ +   KL       G
Sbjct: 57  EADMLAVRQVPADLVGRGAIGR------LEDAVGKVTKVPLAEGEFVLASKLARGDGTDG 110

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSNIRVI 177
           L+  LP+G RA T+      AVGG ++P D VDV +     +    +P V +++ N+ V+
Sbjct: 111 LAYRLPEGTRALTVAADPVIAVGGFVQPGDRVDVFIGLPGGQPGVAQPEVRLLVENVLVL 170

Query: 178 AIDHNIDSDERVLVG--STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+     ++ +      +  TL ++P  A A+V A+   +L L LR   D  P+    + 
Sbjct: 171 AVQQQTAAEGQPAGEGLTHLTLAVSPAHAAAIVLAEQEGRLRLALRPAGDDTPAGPITAR 230

Query: 236 VWDVQE 241
           + D+  
Sbjct: 231 LADLAR 236


>gi|227326301|ref|ZP_03830325.1| hypothetical protein PcarcW_02899 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 314

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 103/277 (37%), Gaps = 44/277 (15%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+     +  + V A +  ++    +S        V+ + P     VL++  DL  G  
Sbjct: 1   MKVNSTYVLSGALVLAGIVALMVRSHLSSEPPAPPPVVVKAPEPT-KVLVAAKDLHPGDF 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +  + L W    +        + V+  +    L G  +R P+ +G  +    +V+    G
Sbjct: 60  LDSSSLRWQETEKSV--SRAFNFVYGQDKQSLLLGATLREPVKEGSWLSSNVVVNPNEPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------- 166
            ++++L KG RA ++  S  ++  G++   D VDV++     ++                
Sbjct: 118 FVAAVLRKGMRAISVPTSAIASNAGLVSAGDRVDVILSMKRDDQSELPASRNQPVVMPLL 177

Query: 167 -VTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199
               ++ ++RV+A++    +                            R     T TLE+
Sbjct: 178 ASQTIVRDLRVLALNDKTGTPVYPRFDTAEDGTVLDATAKSRESAVRSRPATYQTVTLEV 237

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           TP QA+AL  A+ +  L L LRS    +         
Sbjct: 238 TPQQAEALAVAKELGILHLALRSADLDDSVDPATGRP 274


>gi|53719510|ref|YP_108496.1| putative membrane fimbriae assembly protein [Burkholderia
           pseudomallei K96243]
 gi|126451660|ref|YP_001066057.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
 gi|134282337|ref|ZP_01769042.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           305]
 gi|167902900|ref|ZP_02490105.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           NCTC 13177]
 gi|167911137|ref|ZP_02498228.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           112]
 gi|167919160|ref|ZP_02506251.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           BCC215]
 gi|217423802|ref|ZP_03455303.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|226199689|ref|ZP_03795242.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812066|ref|YP_002896517.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
 gi|242315361|ref|ZP_04814377.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
 gi|254179958|ref|ZP_04886557.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|254188632|ref|ZP_04895143.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254197581|ref|ZP_04904003.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
 gi|254259533|ref|ZP_04950587.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
 gi|52209924|emb|CAH35896.1| putative membrane fimbriae assembly protein [Burkholderia
           pseudomallei K96243]
 gi|126225302|gb|ABN88842.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
 gi|134246375|gb|EBA46464.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           305]
 gi|157936311|gb|EDO91981.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169654322|gb|EDS87015.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
 gi|184210498|gb|EDU07541.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|217393660|gb|EEC33681.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|225928275|gb|EEH24309.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237503330|gb|ACQ95648.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
 gi|242138600|gb|EES25002.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106b]
 gi|254218222|gb|EET07606.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
          Length = 299

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +   +    A++ GI A  L                   + V+++   L  G  +  + L
Sbjct: 8   IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P      G   +         + G +    I    P+   +L+     GL+  + 
Sbjct: 68  KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177
            G+RA  + +  ++AVG  ++P + VDV +                +    ++LS +RV+
Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175

Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           +        +           TA L +   Q  AL  A++  +L L LRS  D + ++  
Sbjct: 176 SFGDATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIAAQT 235

Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261
            + +      G   Q     V+    G G
Sbjct: 236 VA-IRAPAGAGPSNQAATGLVLSELSGSG 263


>gi|332798621|ref|YP_004460120.1| Flp pilus assembly protein CpaB [Tepidanaerobacter sp. Re1]
 gi|332696356|gb|AEE90813.1| Flp pilus assembly protein CpaB [Tepidanaerobacter sp. Re1]
          Length = 264

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 90/259 (34%), Gaps = 46/259 (17%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K  RL+ ++ + V  +   +I   L     +           K I V+ +  ++A    +
Sbjct: 4   KKIRLIALIAALVTCISLYLIVSNLQKGGSIALNS-------KTITVVTATQNIAPYTKI 56

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN--G 119
           T  ++        +    +   +       ++ G + +  I  G+ I   ++    +   
Sbjct: 57  TAEMVSAQNITASDGIQNYFTQI------GDVVGKICKSDIYAGEVITSNRIAGEKDISL 110

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT----------- 168
           GL++ L  G RA T+ + +   V   IK  ++VDV+ V  +       T           
Sbjct: 111 GLATQLENGMRAVTIAVDVEQGVAATIKAGNYVDVIYVNKVDGGSGDTTASSYLNSAAGA 170

Query: 169 -------------------VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209
                                L N++V+A+D+    D+      + TL +TP QA  L  
Sbjct: 171 KNPVNSQTLYHNYGQYFAVTALQNVKVVALDNVFYKDDTKTSYQSVTLGVTPEQAAQLAL 230

Query: 210 A-QSVAKLSLVLRSIADLN 227
                  + L LR   D  
Sbjct: 231 MCDGEGTIRLSLRPQEDKT 249


>gi|167620225|ref|ZP_02388856.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           Bt4]
          Length = 266

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 92/269 (34%), Gaps = 27/269 (10%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +   +    A++ GI A  L                   + V+++   L  G  +  + L
Sbjct: 8   IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADAL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P                    + G +    I+   P+   +L+     GL+  + 
Sbjct: 68  KVQQTPAPIA--------GAFPNPTLVTGRIPANDIVAQAPVLESELM----SGLADQIA 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177
            G+RA  + +  ++AVG  ++P + VDV +                +    ++LS +RV+
Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVL 175

Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           +        +           TA L +   Q  AL  A++  +L L LRS  D + + + 
Sbjct: 176 SFGDATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDDDVA-TR 234

Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261
              +      G   +     V+    G G
Sbjct: 235 TVAMRASGAGGPSNEAATGLVLGELSGSG 263


>gi|53723521|ref|YP_102955.1| hypothetical protein BMA1291 [Burkholderia mallei ATCC 23344]
 gi|67641295|ref|ZP_00440076.1| Flp pilus assembly protein CpaB [Burkholderia mallei GB8 horse 4]
 gi|121600825|ref|YP_993099.1| hypothetical protein BMASAVP1_A1779 [Burkholderia mallei SAVP1]
 gi|124385109|ref|YP_001026124.1| hypothetical protein BMA10229_A0116 [Burkholderia mallei NCTC
           10229]
 gi|126449256|ref|YP_001080604.1| putative pilus assembly protein CpaB [Burkholderia mallei NCTC
           10247]
 gi|167002483|ref|ZP_02268273.1| putative pilus assembly protein CpaB [Burkholderia mallei PRL-20]
 gi|254177688|ref|ZP_04884343.1| putative pilus assembly protein CpaB [Burkholderia mallei ATCC
           10399]
 gi|254199897|ref|ZP_04906263.1| putative pilus assembly protein CpaB [Burkholderia mallei FMH]
 gi|254206229|ref|ZP_04912581.1| putative pilus assembly protein CpaB [Burkholderia mallei JHU]
 gi|254358354|ref|ZP_04974627.1| putative pilus assembly protein CpaB [Burkholderia mallei
           2002721280]
 gi|52426944|gb|AAU47537.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
 gi|121229635|gb|ABM52153.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
 gi|126242126|gb|ABO05219.1| putative pilus assembly protein CpaB [Burkholderia mallei NCTC
           10247]
 gi|147749493|gb|EDK56567.1| putative pilus assembly protein CpaB [Burkholderia mallei FMH]
 gi|147753672|gb|EDK60737.1| putative pilus assembly protein CpaB [Burkholderia mallei JHU]
 gi|148027481|gb|EDK85502.1| putative pilus assembly protein CpaB [Burkholderia mallei
           2002721280]
 gi|160698727|gb|EDP88697.1| putative pilus assembly protein CpaB [Burkholderia mallei ATCC
           10399]
 gi|238522204|gb|EEP85650.1| Flp pilus assembly protein CpaB [Burkholderia mallei GB8 horse 4]
 gi|243061823|gb|EES44009.1| putative pilus assembly protein CpaB [Burkholderia mallei PRL-20]
          Length = 299

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 93/269 (34%), Gaps = 27/269 (10%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +   +    A++ GI A  L                   + V+++   L  G  +  + L
Sbjct: 8   IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P      G   +         + G +    I    P+   +L+     GL+  + 
Sbjct: 68  KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177
            G+RA  + +  ++AVG  ++P + VDV +                +    ++LS +RV+
Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175

Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           +        +           TA L +   Q  AL  A++  +L   LRS  D + ++  
Sbjct: 176 SFGDATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVFALRSPRDEDIAAQT 235

Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261
            + +      G   Q     V+    G G
Sbjct: 236 VA-IRAPAGAGPSNQAATGLVLSELSGSG 263


>gi|161524906|ref|YP_001579918.1| Flp pilus assembly protein CpaB [Burkholderia multivorans ATCC
           17616]
 gi|189350344|ref|YP_001945972.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
 gi|160342335|gb|ABX15421.1| Flp pilus assembly protein CpaB [Burkholderia multivorans ATCC
           17616]
 gi|189334366|dbj|BAG43436.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
          Length = 313

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 96/263 (36%), Gaps = 31/263 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
                +   +    A++ GI A  ++         V     A  ++V+++   L VG  +
Sbjct: 3   NNLTKIIAGLLIAIAVLLGIYAW-MLGRSTPHPAPVQPTVAANPVSVVVATRTLPVGQPI 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L+    P  +V  G   D         L G +    I    P+  + LV     GL
Sbjct: 62  AADALKVQ--PIASVPAGAFADPAV------LVGRVPARDIPASAPVVSDALV----SGL 109

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLSN 173
           +  +  G+RA  + +  ++AVG  ++P + VDV +               +    +++S 
Sbjct: 110 AEDVQPGERAIAVRVDETNAVGNRLRPGNFVDVFLNLKREGNSMLDGEVSQTQARLLMSK 169

Query: 174 IRVIAIDHNI----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
           +RV++                S+ +      A L +   Q  AL   +S  +L+L LR+ 
Sbjct: 170 VRVLSFGDATPDRDSGNNTNGSNGQPSGVRIAVLAVPTAQVDALTLGESSGRLTLALRNP 229

Query: 224 ADLNPSSSEDSDVWDVQEEGKEI 246
            D   +    +   D +     +
Sbjct: 230 RDDELAMQTVAVRTDNKLSPSAL 252


>gi|167919050|ref|ZP_02506141.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei BCC215]
          Length = 275

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++  + +    + A+V   +   L    +V   +     P + + V ++  DL  G+++ 
Sbjct: 1   MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104
              L W          G + +                          +L G L+R P+  
Sbjct: 57  DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116

Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159
           G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ +     
Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176

Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209
                  +R      + + +RV+A+         D+ +      T T E++   A+ +  
Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236

Query: 210 AQSVAKLSLVLRSIA 224
              +  LSL LRS A
Sbjct: 237 GAHLGALSLALRSFA 251


>gi|167902789|ref|ZP_02489994.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei NCTC
           13177]
          Length = 279

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++  + +    + A+V   +   L    +V   +     P + + V ++  DL  G+++ 
Sbjct: 1   MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104
              L W          G + +                          +L G L+R P+  
Sbjct: 57  DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116

Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159
           G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ +     
Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176

Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209
                  +R      + + +RV+A+         D+ +      T T E++   A+ +  
Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236

Query: 210 AQSVAKLSLVLRSIA 224
              +  LSL LRS A
Sbjct: 237 GAHLGALSLALRSFA 251


>gi|167581962|ref|ZP_02374836.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           TXDOH]
          Length = 269

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 105/268 (39%), Gaps = 33/268 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++  + +    + A+V   +   L    ++   +     P + + V ++  DL  G+++ 
Sbjct: 1   MSHFLKLAGLMLVAVVGAFLFRAL----YIAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQ--------------PNAMQELDGVLVRVPILKGDPI 108
              L W      +V  G + +                   A  +L G L+R P+ +G P+
Sbjct: 57  DVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAAAAGDLKGDLLRHPVREGMPL 116

Query: 109 RLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-------- 159
               ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ +         
Sbjct: 117 GPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAPGGAP 176

Query: 160 -LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVAAQSV 213
              ER      + + +RV+A+         D+ +      T T E++   A+ +     +
Sbjct: 177 ADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSHDAQVITVGAHL 236

Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQE 241
             LSL LRS A  +  ++  +       
Sbjct: 237 GALSLALRSFATSDRGAAGLASAEPPAP 264


>gi|126439530|ref|YP_001058806.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
 gi|126219023|gb|ABN82529.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
          Length = 299

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 94/269 (34%), Gaps = 27/269 (10%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +   +    A++ GI A  L                   + V+++   L  G  +  + L
Sbjct: 8   IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P      G   +         + G +    I    P+   +L+     GL+  + 
Sbjct: 68  KVQQAPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177
            G+RA  + +  ++AVG  ++P + VDV +                +    ++LS +RV+
Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175

Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           +        +           TA L +   Q  AL  A++  +L L LRS  D + ++  
Sbjct: 176 SFGDATVDRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIAAQT 235

Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261
            + +      G   Q     V+    G G
Sbjct: 236 VA-IRAPAGAGPSNQAATGLVLSELSGSG 263


>gi|330819175|ref|YP_004348037.1| Flp pilus assembly protein CpaB [Burkholderia gladioli BSR3]
 gi|327371170|gb|AEA62525.1| Flp pilus assembly protein CpaB [Burkholderia gladioli BSR3]
          Length = 354

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 100/280 (35%), Gaps = 34/280 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ-TEEVITENPAKFINVLISKGDLAVGMVV 61
               + I ++   A     +  R +     +   E         ++V++ + D+  G  +
Sbjct: 13  ANTWLLIGIAVAAAGGITWVTYRYMLVSEARIKAEAAERREGPGVSVVVPRADVPAGTPL 72

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
              +        + V+D  +      +        ++  P+ +G P+RL+ +        
Sbjct: 73  DSAVFVAREISADLVYDDMLQ----VDDFTHHRNAVLVKPVRRGRPLRLQDVDATRARDF 128

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---------RSLSERKPTVTVVLS 172
           S  L  G RA T+ I   ++   M++P + VD+  V            +    ++ +++ 
Sbjct: 129 SDTLAAGMRALTLPIDAINSTDSMLRPGNRVDLYWVGTLSFVTRGGDPAGDTKSIRLLMP 188

Query: 173 NIRVIAIDHNIDSDERVLVGS------------TATLELTPMQAKALVAAQSVAKLSLVL 220
            +RV+A  H++   +                  T TL++   +A  +  AQ +  L LVL
Sbjct: 189 GVRVLATGHDVRPRDAGEAARDMADGARRDGYGTVTLQVPVAEAARIALAQKLGGLRLVL 248

Query: 221 RSIADLNPSSSEDSD--------VWDVQEEGKEIQIIKAG 252
           R+  D         D             ++ + ++II  G
Sbjct: 249 RNSKDPGDPVQRGLDETELFAARADAPADDRERVEIITGG 288


>gi|126452162|ref|YP_001066149.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
 gi|126225804|gb|ABN89344.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1106a]
          Length = 350

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++  + +    + A+V   +   L    +V   +     P + + V ++  DL  G+++ 
Sbjct: 1   MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104
              L W          G + +                          +L G L+R P+  
Sbjct: 57  DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116

Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159
           G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ +     
Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176

Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209
                  +R      + + +RV+A+         D+ +      T T E++   A+ +  
Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236

Query: 210 AQSVAKLSLVLRSIA 224
              +  LSL LRS A
Sbjct: 237 GAHLGALSLALRSFA 251


>gi|218513094|ref|ZP_03509934.1| pilus assembly protein [Rhizobium etli 8C-3]
          Length = 202

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 88/202 (43%), Positives = 128/202 (63%), Gaps = 4/202 (1%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+ + V+ V A +AG++AMR+     V T+          +NVL+S G+LAVG  
Sbjct: 1   MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIEKEPTVNVLVSSGNLAVGQR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    + W+A+P+  V  G I ++ +P+A+++L G +VR+PI +G+PIR EK+ D  +  
Sbjct: 61  LEEGSVHWMAWPQGGVVPGLITEIEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179
           LSSLLP GKRA   +IS+++  GG I PND VDV+MVR  +E  K     VLSN+RV+AI
Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180

Query: 180 DHNI---DSDERVLVGSTATLE 198
           D  I   D   + +VG+TATLE
Sbjct: 181 DQQIQEKDDGSKAVVGTTATLE 202


>gi|254197384|ref|ZP_04903806.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
 gi|169654125|gb|EDS86818.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           S13]
          Length = 350

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 33/245 (13%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
               ++  ++   L    +V   +     P + + V ++  DL  G+++    L W    
Sbjct: 7   LASLMLVAVVGAFLFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLLLRDADLGWKTMA 66

Query: 73  EENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILKGDPIRLEKLV 114
                 G + +                          +L G L+R P+  G P+    ++
Sbjct: 67  RSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRAGAPLGPADVI 126

Query: 115 DRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---------LSERK 164
                G L++ L  G RA ++ I   S   G+I+P D+VDV++ +            +R 
Sbjct: 127 SPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAPGGTPADPQRA 186

Query: 165 PTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                + + +RV+A+         D+ +      T T E++   A+ +     +  LSL 
Sbjct: 187 VESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITVGAHLGALSLA 246

Query: 220 LRSIA 224
           LRS A
Sbjct: 247 LRSFA 251


>gi|254297794|ref|ZP_04965247.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           406e]
 gi|157806884|gb|EDO84054.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           406e]
          Length = 299

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 93/269 (34%), Gaps = 27/269 (10%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +   +    A++ GI A  L                     V+++   L  G  +  + L
Sbjct: 8   IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMAPVVVAARALPAGQPIPADAL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P      G   +         + G +    I    P+   +L+     GL+  + 
Sbjct: 68  KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177
            G+RA  + +  ++AVG  ++P + VDV +                +    ++LS +RV+
Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175

Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           +        +           TA L +   Q  AL  A++  +L L LRS  D + ++  
Sbjct: 176 SFGDATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIAAQT 235

Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261
            + +      G   Q     V+    G G
Sbjct: 236 VA-IRAPAGAGPSNQAATGLVLSELSGSG 263


>gi|76810999|ref|YP_333434.1| CpaB family Flp pilus assembly protein [Burkholderia pseudomallei
           1710b]
 gi|126438737|ref|YP_001058907.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
 gi|134282270|ref|ZP_01768975.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           305]
 gi|226196386|ref|ZP_03791968.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|254179873|ref|ZP_04886472.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|254188721|ref|ZP_04895232.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254258897|ref|ZP_04949951.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
 gi|76580452|gb|ABA49927.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           1710b]
 gi|126218230|gb|ABN81736.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           668]
 gi|134246308|gb|EBA46397.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           305]
 gi|157936400|gb|EDO92070.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|184210413|gb|EDU07456.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1655]
 gi|225931603|gb|EEH27608.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           Pakistan 9]
 gi|254217586|gb|EET06970.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           1710a]
          Length = 350

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++  + +    + A+V   +   L    +V   +     P + + V ++  DL  G+++ 
Sbjct: 1   MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104
              L W          G + +                          +L G L+R P+  
Sbjct: 57  DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116

Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159
           G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ +     
Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176

Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209
                  +R      + + +RV+A+         D+ +      T T E++   A+ +  
Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236

Query: 210 AQSVAKLSLVLRSIA 224
              +  LSL LRS A
Sbjct: 237 GAHLGALSLALRSFA 251


>gi|121599044|ref|YP_993007.1| Flp pilus assembly protein CpaB [Burkholderia mallei SAVP1]
 gi|124386572|ref|YP_001026339.1| Flp pilus assembly CpaB [Burkholderia mallei NCTC 10229]
 gi|126449623|ref|YP_001080387.1| Flp pilus assembly protein CpaB [Burkholderia mallei NCTC 10247]
 gi|254177864|ref|ZP_04884519.1| Flp pilus assembly protein CpaB family [Burkholderia mallei ATCC
           10399]
 gi|254358541|ref|ZP_04974814.1| Flp pilus assembly protein CpaB family [Burkholderia mallei
           2002721280]
 gi|121227854|gb|ABM50372.1| Flp pilus assembly protein CpaB [Burkholderia mallei SAVP1]
 gi|124294592|gb|ABN03861.1| Flp pilus assembly CpaB [Burkholderia mallei NCTC 10229]
 gi|126242493|gb|ABO05586.1| Flp pilus assembly protein CpaB [Burkholderia mallei NCTC 10247]
 gi|148027668|gb|EDK85689.1| Flp pilus assembly protein CpaB family [Burkholderia mallei
           2002721280]
 gi|160698903|gb|EDP88873.1| Flp pilus assembly protein CpaB family [Burkholderia mallei ATCC
           10399]
          Length = 350

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++  + +    + A+V   +   L    +V   +     P + + V ++  DL  G+++ 
Sbjct: 1   MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104
              L W          G + +                          +L G L+R P+  
Sbjct: 57  DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116

Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159
           G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ +     
Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176

Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209
                  +R      + + +RV+A+         D+ +      T T E++   A+ +  
Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236

Query: 210 AQSVAKLSLVLRSIA 224
              +  LSL LRS A
Sbjct: 237 GAHLGALSLALRSFA 251


>gi|89897409|ref|YP_520896.1| hypothetical protein DSY4663 [Desulfitobacterium hafniense Y51]
 gi|89336857|dbj|BAE86452.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 286

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 19/226 (8%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G+I + L          +  ++ ++  +V+    ++  G  +T ++ + V   E N+ 
Sbjct: 21  VLGVICIVLSLVICFALTPLFNQSVSQKASVVRVVKEIKAGDAITKDMFQTVEVGEYNLP 80

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           +  I           + G      ++ GD I   KL D      + L  L   K+A ++ 
Sbjct: 81  EDVIKQQDS------VLGKYAVADLVPGDYILSAKLSDTPASENAYLYNLSGDKQAISVS 134

Query: 136 I-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184
           I + +  + G +   D V V+      +    +   L+ + VI +               
Sbjct: 135 IKNFAGGLSGKLISGDIVSVIAPDYKKQGSTVIPTELTYVEVIGVTASTGYDTDTGEQTK 194

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
            ++   + +T TL ++P QAK L   +S  KL L L        ++
Sbjct: 195 DEDEKQLPATVTLLVSPEQAKILAELESDGKLHLSLVYRGSKENAA 240


>gi|114321312|ref|YP_742995.1| Flp pilus assembly protein CpaB-like protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227706|gb|ABI57505.1| Flp pilus assembly protein CpaB-like protein [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 316

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 85/251 (33%), Gaps = 33/251 (13%)

Query: 1   MKLTRLMGIVVS-GVFALVAGIIAMRLVSPHHVQ---------TEEVITENPAKFINVLI 50
           M    L+ + +     ALV G   + LV+    +          E            V+ 
Sbjct: 1   MNSRVLIVLAIVFIGAALVVGWWGISLVTDDESEIRIDEVTDVPEPDEPRPDEDGHPVVF 60

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +  +L  G +V    +         V      D       +E+ G+ V  PI +G+ +  
Sbjct: 61  AVTELEPGQLVGEADIHTETL--RRVPPLAFSDP------EEVIGLRVEAPIQEGELLTA 112

Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV 170
            +        +S  L  G+RA  + +     VGG + P D VDV++  S         ++
Sbjct: 113 PRFSVASQ--VSRGLLPGERAVAISVDDVIGVGGYLSPGDRVDVMLYLSQRGVGEIGRLL 170

Query: 171 LSNIRVIAIDH-------------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
             NIRV+A                + +  +R     TA L L       L+ A S   L 
Sbjct: 171 HPNIRVLAYGEDLAIPPDGVVDRRDEEGTQRQRGARTAVLALPEEDVATLLLADSAGTLR 230

Query: 218 LVLRSIADLNP 228
           L  R   +  P
Sbjct: 231 LAARPAIERRP 241


>gi|114797097|ref|YP_759868.1| putative Flp pilus assembly protein CpaB [Hyphomonas neptunium ATCC
           15444]
 gi|114737271|gb|ABI75396.1| putative Flp pilus assembly protein CpaB [Hyphomonas neptunium ATCC
           15444]
          Length = 295

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 92/239 (38%), Gaps = 18/239 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   L+ + +S      A       +S    +    +         + +++  +  G +
Sbjct: 1   MKAIPLISLGLSLALGAGAIFFGREFMSGDGGEANAAVAAPAIAMTQIAVARATIEPGKL 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNG 119
           +  +++E   +PE  V  G +  V          G++V      G+P+  EK+       
Sbjct: 61  IDASMVEMRDWPESAVPAGAMRAVTDLGETAYSRGLVV-----AGEPLLAEKIDTTGSVL 115

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----------PTVT 168
            L++ +  G RA ++ ++  + V G + P D VDV       + +               
Sbjct: 116 TLAANIQPGMRAVSVVVANDTGVAGFVLPGDRVDVNEFVEAKDARGAPEDSRRSADVFAQ 175

Query: 169 VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            VL  ++V+A+D   +   E     +T TLE+TP  A  L AA   A L L L    + 
Sbjct: 176 PVLKGVKVLAVDQTFEEGLEGAYPSNTVTLEVTPQDALLLGAASRRAALGLALIGREEE 234


>gi|83721444|ref|YP_442981.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis
           E264]
 gi|257139205|ref|ZP_05587467.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis
           E264]
 gi|83655269|gb|ABC39332.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           E264]
          Length = 345

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 107/278 (38%), Gaps = 33/278 (11%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++  + +    + A+V   +   L    +V   +     P + + V ++  DL  G+++ 
Sbjct: 1   MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQ--------------PNAMQELDGVLVRVPILKGDPI 108
              L W      +V  G + +                   A  +L G L+R P+ +G P+
Sbjct: 57  DVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAAAAGDLKGDLLRHPVREGMPL 116

Query: 109 RLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-------- 159
               ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ +         
Sbjct: 117 GPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAPGGAP 176

Query: 160 -LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVAAQSV 213
              ER      + + +RV+A+         D+ +      T T E++   A+ +     +
Sbjct: 177 ADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSHDAQVITVGAHL 236

Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
             LSL LRS A  +  +   +             + +A
Sbjct: 237 GALSLALRSFATSDRGAVGLASAEPPAPPVWAGDVSRA 274


>gi|217421311|ref|ZP_03452815.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|237812164|ref|YP_002896615.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
 gi|217395053|gb|EEC35071.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei
           576]
 gi|237502713|gb|ACQ95031.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346]
          Length = 350

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++  + +    + A+V   +   L    +V   +     P + + V ++  DL  G+++ 
Sbjct: 1   MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104
              L W          G + +                          +L G L+R P+  
Sbjct: 57  DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116

Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159
           G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ +     
Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176

Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209
                  +R      + + +RV+A+         D+ +      T T E++   A+ +  
Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236

Query: 210 AQSVAKLSLVLRSIA 224
              +  LSL LRS A
Sbjct: 237 GAHLGALSLALRSFA 251


>gi|53719432|ref|YP_108418.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei K96243]
 gi|52209846|emb|CAH35818.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei K96243]
          Length = 350

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++  + +    + A+V   +   L    +V   +     P + + V ++  DL  G+++ 
Sbjct: 1   MSHFLKLAGLMLVAVVGAFLFRVL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104
              L W          G + +                          +L G L+R P+  
Sbjct: 57  DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116

Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159
           G P+    ++     G L++ L  G RA ++ I   S   G+I+P D+VDV++ +     
Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176

Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209
                  +R      + + +RV+A+         D+ +      T T E++   A+ +  
Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236

Query: 210 AQSVAKLSLVLRSIA 224
              +  LSL LRS A
Sbjct: 237 GAHLGALSLALRSFA 251


>gi|149188847|ref|ZP_01867137.1| hypothetical protein VSAK1_05840 [Vibrio shilonii AK1]
 gi|148837267|gb|EDL54214.1| hypothetical protein VSAK1_05840 [Vibrio shilonii AK1]
          Length = 281

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 101/272 (37%), Gaps = 29/272 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIA-----MRLVSPHHVQTEEVITENPAKFINVLISKGDL 55
           MK   +  +    +   V G+ +     ++       Q      E  A+++ V  S   +
Sbjct: 1   MKSKIIFAVAFLAILIGVLGVYSSMNKPLQQPVVEEKQAATPTIEPKAEYVTVWRSTESI 60

Query: 56  AVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
           + G  +  + ++       +  D  I    + +        L   PI  G  I  E L  
Sbjct: 61  SRGEPINSSKVKREQLLLTSALDEGIRSDVELDFDPT---TLFNTPISSGQLILPEMLTK 117

Query: 116 RG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------ 162
           +   G +  L+ +G     + +S  + +   I+P +H+D++ V S  +            
Sbjct: 118 KDAPGYIDLLVTEGMTLYPLVVSSKNLISDFIRPGEHIDILTVSSPKDNLSGKREKPIKF 177

Query: 163 RKPTVTVVLSNIRVIAIDHNIDS-------DERVLVGSTATLELTPMQAKALVAAQSVAK 215
           R  T T+ L NI+V+ +  + +        + +    +T  +E+ P +   L  AQ    
Sbjct: 178 RGVTATLFLQNIKVLNMGGSEEEQSVKPVSENKEDGFTTIIIEIPPEEVARLALAQRTMH 237

Query: 216 LSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           L  V RS     P  ++  +V D     +E++
Sbjct: 238 LE-VYRSREYQEPVYADVRNVMDNYIGVEELR 268


>gi|227114875|ref|ZP_03828531.1| hypothetical protein PcarbP_18020 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 314

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 99/277 (35%), Gaps = 44/277 (15%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+     +  + V A +  ++    +S         +     +   VL++  DL  G  
Sbjct: 1   MKVNSTYVLSGALVLAGIVALMVRSHLSS-EPPAPPPVVVKAPEKAAVLVAAKDLHPGDF 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           + P+ L W     +       + V   +    L G  +R  + +G  +    +V     G
Sbjct: 60  IDPSSLRWQT--TDEPVSRSFNFVRGQDNQSLLLGATLRETVTQGSWLSSNVVVKPNEPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------- 166
            ++++L KG RA ++  S  ++  G++   D VDV++     ++                
Sbjct: 118 FVAAVLHKGMRAISVPTSAIASNAGLVSAGDRVDVILSMRRDDQSELPASRNQPVVMPLL 177

Query: 167 -VTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199
               ++ ++RV+A++    +                            R     T TLE+
Sbjct: 178 ASQTIVRDLRVLALNDKTGTPIYPRFDAAEDGTVLDATAKSRESAVRSRPATYQTVTLEV 237

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           TP QA+AL  A+ +  L L LRS    +         
Sbjct: 238 TPQQAEALAVAKELGILHLALRSADLDDVVDPTTGRP 274


>gi|170701751|ref|ZP_02892687.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10]
 gi|170133334|gb|EDT01726.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10]
          Length = 301

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 90/264 (34%), Gaps = 26/264 (9%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
                +   +    A++ GI A  L                A+ + ++++   L  G  +
Sbjct: 3   NNLTKIIAGLLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPIVVAARLLPAGQPI 62

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L+        +  G  +D         L G +    IL   P+    L      GL
Sbjct: 63  PADALKLAQV--SMMPTGGFNDP------TALVGRVPANDILAAAPVLEGGLT----SGL 110

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----------PTVTVVL 171
           +  +  G+RA  + +  S+AVG  ++P + VDV +                      ++L
Sbjct: 111 ADQVALGERAVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQATSEIPATQARLLL 170

Query: 172 SNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           S +RV++        +          TA L +   Q  AL  A++  +L+L LR+  D  
Sbjct: 171 SKVRVLSFGDATSDRDGGGGPSGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTE 230

Query: 228 PSSSEDSDVWDVQEEGKEIQIIKA 251
            ++   +      E     Q    
Sbjct: 231 IATQTVAVRTGGGEATPSAQAASG 254


>gi|154250525|ref|YP_001411349.1| SAF domain-containing protein [Parvibaculum lavamentivorans DS-1]
 gi|154154475|gb|ABS61692.1| SAF domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 317

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 22/240 (9%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
            +      ++         + VL++  D+  G  ++   L      E     G   D   
Sbjct: 56  SARAPAGVDDGRGLAAENAVTVLVAARDVVRGQRISEADLGLRRM-EGPAPSGSFAD--- 111

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
               Q   G +    I     I  + L  +    G+++L+P+G+RA  + I+    VGG 
Sbjct: 112 ---AQSAIGRVATDDIRSSQIIFQQALSSEPAAAGIAALVPEGQRAFAIRIAEEDIVGGF 168

Query: 146 IKPNDHVDVVMVRSL------------SERKPTVTVVLSNIRVIAIDHNI--DSDERVLV 191
           ++  D VDV                     +    ++L +++V+A+   +   + +    
Sbjct: 169 LQAGDRVDVFATFPGAVYGQQGGLGQREGDQSKSALLLQDMQVLAVGPALSHQAGQVNAG 228

Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
             T T+   P     L  A  +  ++L +R+  D   +  E   + D++  G  +  ++A
Sbjct: 229 ARTVTVAAPPNALARLALAGRLGHITLAIRNPGDREVAPGELVALDDLRPAGAAVAPVEA 288


>gi|319795778|ref|YP_004157418.1| flp pilus assembly protein cpab [Variovorax paradoxus EPS]
 gi|315598241|gb|ADU39307.1| Flp pilus assembly protein CpaB [Variovorax paradoxus EPS]
          Length = 327

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 84/253 (33%), Gaps = 33/253 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE-------NPAKFINVLISKG 53
           M     +   +  + A+  G  A  L            T          A    V+++  
Sbjct: 1   MINLTKIIAAILVLLAIALGGYAWMLSRQAPAPRPIATTPNTASAKTQQAVTYPVVVAAK 60

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
            L  G ++  + L            G   D           G +  + + +G P+   +L
Sbjct: 61  ALPAGQIIPADALRVERLTIN--PSGAFQDTAV------ATGRVPVLDLGEGTPLLEGQL 112

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVV 170
           V     GL+  + +G+RA  +       VG  ++P D VDV ++         +    ++
Sbjct: 113 V----SGLALKIAEGERAVAVKADEVMGVGNKVQPGDFVDVFILLKSDGKDVDRSQARLL 168

Query: 171 LSNIRVIAIDHNIDSD-----------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           LS  RV+A  +                +R     TA L +       L  A+S  +L L 
Sbjct: 169 LSRKRVLAFGNASVDGLTSKTADKQQPQRAEPARTAVLAVPVDDINRLTLAESSGRLLLA 228

Query: 220 LRSIADLNPSSSE 232
           LR+  D+     +
Sbjct: 229 LRNPTDMQEPDPK 241


>gi|307730007|ref|YP_003907231.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
 gi|307584542|gb|ADN57940.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003]
          Length = 317

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 93/275 (33%), Gaps = 29/275 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M     +   +    AL+ G+IA+ L+          +T        V+++   L  G  
Sbjct: 1   MLKFTRIAAGLLIAVALLLGVIAVTLLRR---PAPAPVTSVRQSLFPVVVAARLLPAGKP 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + L     P     +G   +         + G +    I    P+  E+L    + G
Sbjct: 58  IAADALRVQPLPIH--PNGAFAEPSL------VAGRVPAADIGAEAPVLEEQL----SSG 105

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTVVLS 172
           L+  +  G+RA  + +  S+AVG  ++P + VDV                 +    +++S
Sbjct: 106 LAERIEPGERAVAVRVEESNAVGNRLRPGNFVDVFFTLKRDGNMGSGGEIGQTQARLLMS 165

Query: 173 NIRVIAIDHNI----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
            +RV+A  +       S ++  +  TA L +       L  A+S  +L   LR+  D   
Sbjct: 166 KLRVLAFGNATATGDTSGDQNGMVRTAVLAVPVADVDRLTLAESSGRLVFALRNPKDPEV 225

Query: 229 SSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEGIS 263
             +                  + G          +
Sbjct: 226 IDASAFAPLPAVLSTSTQT--RGGAPHGDSTRAAA 258


>gi|172060494|ref|YP_001808146.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
 gi|171993011|gb|ACB63930.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6]
          Length = 311

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 95/267 (35%), Gaps = 32/267 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
                +   +    A++ GI A  ++     Q   V     A  + V+++   L VG  +
Sbjct: 3   NNLTKIIAGLLIAIAVLLGIYAW-MLGRSASQPAPVQQVIAASPVPVVVATRALPVGQPI 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L+    P   V  G   D         L G +    I    P+  + LV     GL
Sbjct: 62  AADALKVQ--PIAPVPTGAFADPAI------LVGRVPARDIPASAPVVSDSLV----SGL 109

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---------TVTVVLS 172
           +  +  G+RA  + +  ++AVG  ++P + VDV +        P            +++S
Sbjct: 110 AEDVQPGERAIAIRVDETNAVGNRLRPGNFVDVFVNLKREASGPMLDGEVSQTQARLLMS 169

Query: 173 NIRVIAIDHNIDSDER----------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
            +RV++        +                 A L +   Q  AL   +S  +L+L LR+
Sbjct: 170 KVRVLSFGDATPERDSGSNTNGNNGQPSSARIAVLAVPTAQVDALTLGESSGRLTLALRN 229

Query: 223 IADLNPSSSEDSDVWDVQEEGKEIQII 249
             D   ++   +   D +     +  +
Sbjct: 230 PRDDELATQTVAVRTDNKLSPSALAAV 256


>gi|160893683|ref|ZP_02074467.1| hypothetical protein CLOL250_01237 [Clostridium sp. L2-50]
 gi|156864668|gb|EDO58099.1| hypothetical protein CLOL250_01237 [Clostridium sp. L2-50]
          Length = 286

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 84/225 (37%), Gaps = 19/225 (8%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G++ + L          +  +  ++   ++     ++VG  +T ++++ +     N+ 
Sbjct: 9   VLGVLCIVLSLIICFAVTPLFNKAMSEKTEIVRVVKPISVGEEITSDMVKTIEVGSYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           D  +           + G      +  GD I   K+ +      + L  L   K+A ++ 
Sbjct: 69  DDVVKHSD------TVVGAFASADLAPGDYILTSKIAEEPAAENAYLYHLTGEKQAISVT 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184
           +   ++ + G +K  D V V+      + K  +   L  + VIA+             ++
Sbjct: 123 VKAFANGLSGKLKSGDIVSVIAPDYRKQGKTVIPAELQYVEVIAVTANSGYDANTGEELE 182

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
                 +  T TL +TP Q+  L   ++  KL L L    D   +
Sbjct: 183 DGADRELPGTVTLLVTPEQSMVLAELEADGKLHLSLVYRGDEKSA 227


>gi|319941903|ref|ZP_08016224.1| hypothetical protein HMPREF9464_01443 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804556|gb|EFW01426.1| hypothetical protein HMPREF9464_01443 [Sutterella wadsworthensis
           3_1_45B]
          Length = 295

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 35/232 (15%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
             +    +       ++V  +  +L+ G  ++   +EW A  +    D F+ +       
Sbjct: 29  QKEAAAPVVSENKAQVSVARAAANLSPGSFLSARDIEWTAVAQSAAKDTFVQNES----- 83

Query: 91  QELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
           Q+L G LV  PI  G+ I    L        ++++L  G RA T+++ + +   G+++P 
Sbjct: 84  QDLSGALVLKPIKAGEVISPSALLARTDPEFVAAVLAPGMRAFTIEVDMVTGGAGLLRPG 143

Query: 150 DHVDVVMVRSLSERKP----------TVTVVLSNIRVIAIDHNIDSDE------------ 187
           + VDV++      +K               +L N+RVIA+DH I+               
Sbjct: 144 NRVDVILAAQTDPQKSRAFASQKNFDVARTLLHNLRVIAVDHTIEPKGFGADPQSSDPRM 203

Query: 188 -------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
                   +    T TLE+TP   + L  A+S  +LSL LR+        + 
Sbjct: 204 VRSSTPANINRKGTVTLEVTPKDVELLTVARSNGQLSLSLRNSQSGEAVQTG 255


>gi|257139290|ref|ZP_05587552.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis
           E264]
          Length = 303

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 92/269 (34%), Gaps = 27/269 (10%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +   +    A++ GI A  L                   + V+++   L  G  +  + L
Sbjct: 8   IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADAL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P                    + G +    I+   P+   +L+     GL+  + 
Sbjct: 68  KVQQTPAPIA--------GAFPNPTLVTGRIPANDIVAQAPVLESELM----SGLADQIA 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177
            G+RA  + +  ++AVG  ++P + VDV +                +    ++LS +RV+
Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVL 175

Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           +        +           TA L +   Q  AL  A++  +L L LRS  D + + + 
Sbjct: 176 SFGDATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDDDVA-TR 234

Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261
              +      G   +     V+    G G
Sbjct: 235 TVAMRASGAGGPSNEAATGLVLGELSGSG 263


>gi|170696787|ref|ZP_02887896.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M]
 gi|170138303|gb|EDT06522.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M]
          Length = 318

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 24/242 (9%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           +V+G    VA ++ +  V          +         V+++   L  G  +  + L   
Sbjct: 12  IVAGALIAVALLLGVFAVMLLRRPAPAPVASVKQTVFPVVVATRVLPAGKPIGADALRVQ 71

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
             P     +G   D         + G +    I    P+  E+L    + GL+  +  G+
Sbjct: 72  PLPIN--PNGAFADPSL------VAGRVPAADIGADSPVLEEQL----SSGLAERIEPGE 119

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLSNIRVIAIDH 181
           RA  + +  S+AVG  ++P + VDV                 +    +++S +RV+A  +
Sbjct: 120 RAVAVRVEESNAVGNRLRPGNFVDVFFTLKRDGNMGSGGEIERTQARLLMSKVRVLAFGN 179

Query: 182 NI----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
                  S +   +  TA L +       L  A+S  +L   LR+  D     +      
Sbjct: 180 ATAAGDTSGDPNGMVRTAVLAVPVADVDRLTLAESSGRLVFALRNPKDAEIIDAAAFAPL 239

Query: 238 DV 239
             
Sbjct: 240 PA 241


>gi|291557188|emb|CBL34305.1| Flp pilus assembly protein CpaB [Eubacterium siraeum V10Sc8a]
          Length = 318

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 83/227 (36%), Gaps = 20/227 (8%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G++ + L          +   + +  + ++  K D+ +G  +T   +E V     N+ 
Sbjct: 9   VLGVVCIALALIICFAITPLFNASKSSTMKIIRIKNDVKIGQEITSKDIEVVEVGAYNMP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRGNGGLSSLLPKGKRAATMD 135
              +         +++ G      ++KG+ +   K+        G    L   KRA ++ 
Sbjct: 69  SEVLQKS------EDVVGKYAAAEMIKGEYVLSAKVSDTPASENGYLYGLTGEKRAISIT 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV--- 191
           I   +  + G +   D V ++ V    + +  V   L  + VIA+     +D+  +    
Sbjct: 123 IPSFAGGLSGKLISGDIVSIIAVDYKEKGETLVPDELQYVEVIAVTDKKGNDDETVTVKP 182

Query: 192 --------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
                     T TL +TP QA  L   ++  ++ + L        + 
Sbjct: 183 DGEEETELPETVTLLVTPEQANILAELEAEGEIHVALVYRGTAENAQ 229


>gi|326204891|ref|ZP_08194744.1| Flp pilus assembly protein CpaB [Clostridium papyrosolvens DSM
           2782]
 gi|325984940|gb|EGD45783.1| Flp pilus assembly protein CpaB [Clostridium papyrosolvens DSM
           2782]
          Length = 283

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 22/229 (9%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G+  + L          +   + ++  +++    D+  G  +  N+++ V     N+ 
Sbjct: 9   VLGVSCILLSLVICFAVTPLFNSSLSQRTSIVRVSRDIKAGDKINGNMVQTVEVGSYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
            G I       +  ++    V   + +GD I + KL        S L  L   K+A ++ 
Sbjct: 69  SGVIK------SKDDVIDKYVLADMKEGDYILITKLSAAPVAENSYLHSLNGEKQAISVT 122

Query: 136 I-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV--- 191
           + S +S + G + P D V V+     ++    V   L  +RVI +  +   D        
Sbjct: 123 VRSFASGLSGKLMPGDIVSVIAPDYKNQGISIVPEELRYVRVIGVTASTGYDTNTSENME 182

Query: 192 ----------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
                      ST TL ++  Q++ L   +S  KL L L        + 
Sbjct: 183 KKSDNKEKELPSTVTLLVSQTQSEILAGLESDGKLHLSLVYRGSKENAD 231


>gi|33596968|ref|NP_884611.1| hypothetical protein BPP2375 [Bordetella parapertussis 12822]
 gi|33566419|emb|CAE37672.1| putative membrane protein [Bordetella parapertussis]
          Length = 313

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 88/259 (33%), Gaps = 34/259 (13%)

Query: 19  AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
           A  +     +P   +              V+++   +A G  +   +L+   +P +    
Sbjct: 22  AAFMLATRPAPPPPKPVAQRASAALPTYPVVVAGKPIAAGDRLAAELLKIERWPVQPANG 81

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138
                       + L G +VR  I  G+P+    L      GL+  L  G+RA T+ +  
Sbjct: 82  YA--------ESEALLGQMVRQDIPAGEPVTAPMLA----RGLARHLAPGERAVTIAVDE 129

Query: 139 SSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRVIAIDHN-------------- 182
            S     I P D VDV +V             ++ S I+V+A                  
Sbjct: 130 LSGAQNRILPGDLVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPSV 189

Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
               +       A L +   +   L+ A    +L LVLRS  D++           +  E
Sbjct: 190 AQRGQPPAAPRNAMLAVPVERVNELLLAAKAGRLQLVLRSPEDVDVPD------LALFPE 243

Query: 243 GKEIQIIKAGVIVNKDGEG 261
              +  ++AG+   +  +G
Sbjct: 244 RAPVLALRAGLTAEQQRDG 262


>gi|330830433|ref|YP_004393385.1| Flp pilus assembly protein CpaB [Aeromonas veronii B565]
 gi|328805569|gb|AEB50768.1| Flp pilus assembly protein CpaB [Aeromonas veronii B565]
          Length = 296

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 94/244 (38%), Gaps = 22/244 (9%)

Query: 28  SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87
           S    +     +  P +   VL++   +  G  + P  L W A PE    +     +   
Sbjct: 30  SGASPRDPPAESLAPDRVAQVLVAAHRVQAGSFIHPEDLRWQALPEAEERNLPGLFLFGF 89

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMI 146
              + L G LV   +  G  +  + LV       LS+++  G RA T+ +   +A  G+I
Sbjct: 90  TDTKALKGSLVTRTLEAGQIVSADDLVRPEQSHYLSAMMAPGMRAVTLALGREAASHGLI 149

Query: 147 KPNDHVDVVMVRSLS----------ERKPTVTVVLSNIRVIAIDHNIDS---------DE 187
           +P + VDV++    +              +  ++L++I+++AID  +            +
Sbjct: 150 RPGNRVDVILTSKHARQHNAQGAEVTSNQSAEIILTDIKLLAIDAQVTDIAALNGNPAAQ 209

Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
                   T EL P  A  L+ A  + +L+LVLRS    +  +   +            Q
Sbjct: 210 DNFDQVAVTFELPPRAAARLLLAHRLGELALVLRSA--QSAPAGSPAMALPEGSLIWAEQ 267

Query: 248 IIKA 251
           + + 
Sbjct: 268 VARG 271


>gi|33593024|ref|NP_880668.1| hypothetical protein BP1995 [Bordetella pertussis Tohama I]
 gi|33563399|emb|CAE42275.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|332382436|gb|AEE67283.1| hypothetical protein BPTD_1965 [Bordetella pertussis CS]
          Length = 313

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 89/259 (34%), Gaps = 34/259 (13%)

Query: 19  AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
           A  +     +P   +              V+++   +A G  +  ++L+   +P +    
Sbjct: 22  AAFMLATRPAPPPPKPVAQRASAALPTYPVVVAGKPIAAGDRLAADLLKIERWPVQPANG 81

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138
                       + L G +VR  I  G+P+    L      GL+  L  G+RA T+ +  
Sbjct: 82  YA--------ESEALLGQMVRQDIPAGEPVTAPMLA----RGLARHLAPGERAVTIAVDE 129

Query: 139 SSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRVIAIDHN-------------- 182
            S     I P D VDV +V             ++ S I+V+A                  
Sbjct: 130 LSGAQNRILPGDLVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPSV 189

Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
               +       A L +   +   L+ A    +L LVLRS  D++           +  E
Sbjct: 190 AQRGQPPAAPRNAMLAVPVERVNELLLAAKAGRLQLVLRSPEDIDVPD------LALFPE 243

Query: 243 GKEIQIIKAGVIVNKDGEG 261
              +  ++AG+   +  +G
Sbjct: 244 RAPVLALRAGLTAEQQRDG 262


>gi|221213140|ref|ZP_03586116.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD1]
 gi|221167353|gb|EED99823.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD1]
          Length = 309

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 89/264 (33%), Gaps = 30/264 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M       I    +   V   I   ++     +   V     A  + ++I+   L  G  
Sbjct: 1   MTNNLTKIIAGLLIAIAVLLGIYAWMLGRSTPRPAPVQQTIAASPVPIVIATRTLPAGQP 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + L+    P   V  G   D         L G +    I    P+  + LV     G
Sbjct: 61  IAADALKIQ--PTSPVPAGAFADAS------TLVGRVPARDIPASSPVVSDALV----SG 108

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLS 172
           L+  +  G+RA  + +  ++AVG  ++P + VDV +               +    +++S
Sbjct: 109 LAEDVQPGERAVAVRVDETNAVGNRLRPGNFVDVFLNLKREGNAMLDGEVSQTQARLLMS 168

Query: 173 NIRVIAIDHNIDSDER----------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
            +RV+A        +                 A L +   Q  AL   ++  +L+L LR+
Sbjct: 169 KVRVLAFGDATPERDSGSNTNGSNAQPSNVRIAVLAVPTAQVDALTLGEASGRLTLALRN 228

Query: 223 IADLNPSSSEDSDVWDVQEEGKEI 246
             D   +    +   D +     +
Sbjct: 229 PRDDEMAMQTVAVRTDNKLSPSAL 252


>gi|257064753|ref|YP_003144425.1| Flp pilus assembly protein CpaB [Slackia heliotrinireducens DSM
           20476]
 gi|256792406|gb|ACV23076.1| Flp pilus assembly protein CpaB [Slackia heliotrinireducens DSM
           20476]
          Length = 273

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 93/241 (38%), Gaps = 16/241 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           + + + GI+     AL   + A +L +    Q  E +     +   V ++  D+A G  V
Sbjct: 4   RKSVVFGILCGIACALCVAMYAQQLQADADAQRAEALARYGGEQTEVWVATRDIAPGETV 63

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
                E+  +  E +    + D+    +       +   PI++G+ I  ++ V      L
Sbjct: 64  DETNAEYRMWLVELLPHDAVSDLAGLES------RVATSPIVQGEVISAQRFVADDEA-L 116

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
            + +P+G  A ++     + VGG I+    VDV +         T  ++  ++ V+    
Sbjct: 117 GTPVPEGLCAVSVPAEDVATVGGSIRAGSRVDVYVS-----SGTTTDLLAHDVLVLFT-- 169

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
           +  S +     S ATL + P   + L++A     L   L   +D   +    +   +  E
Sbjct: 170 SASSADGSEAISWATLAVEPEMVQELISAAERTSLYFSL--PSDSVLADGSYATESEKGE 227

Query: 242 E 242
            
Sbjct: 228 A 228


>gi|149175454|ref|ZP_01854075.1| hypothetical protein PM8797T_18359 [Planctomyces maris DSM 8797]
 gi|148845722|gb|EDL60064.1| hypothetical protein PM8797T_18359 [Planctomyces maris DSM 8797]
          Length = 367

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 23/228 (10%)

Query: 1   MK---LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK     ++  ++      L+A  I  RL++             P    N+ ++  +L  
Sbjct: 1   MKSLTPAKVTLLMFGVFGVLIAAYIGKRLLAGKE-------EAPPVATRNIPMAISELEP 53

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G +VT   L       +N+    +           + G +V+  I    PI   +L    
Sbjct: 54  GTLVTDEHLGLGPIAIKNLKPEMMTSNRV------IVGRIVKERIPAATPISTGQL-YPA 106

Query: 118 NGGLSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTVVL 171
                  +  G RA ++ + S    V G+IKP ++VDV M  +               + 
Sbjct: 107 GETPPIQVEPGMRAISVSLESSVDLVDGLIKPGEYVDVHMTPTGMNNDKRLNGGMTLTLF 166

Query: 172 SNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           + +RVIAI+ +   +     G+  TLELTP QA  ++ A+   ++++ 
Sbjct: 167 NGVRVIAINRSYTQNSSSRRGTNVTLELTPEQANIMILARDRGEITMS 214


>gi|297581607|ref|ZP_06943529.1| flp pilus assembly protein CpaB [Vibrio cholerae RC385]
 gi|297534014|gb|EFH72853.1| flp pilus assembly protein CpaB [Vibrio cholerae RC385]
          Length = 294

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 103/251 (41%), Gaps = 25/251 (9%)

Query: 20  GIIAMRLVSPHHVQTEEVITEN--------PAKFINVLISKGDLAVGMVVTPNILEWVAF 71
            I+++  +      T   +++          A     L +K  +  G ++      WV  
Sbjct: 16  AILSIAWMQNSRPSTSPSVSKPTAVSSLPEKAATPRALAAKYPVQAGALLRAQDFHWVEL 75

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKR 130
             E+        +   + +  L+G L+     +   + +  ++       +S++L  GKR
Sbjct: 76  GSEHNASLNDLFLENFSQLDALEGSLITRHQDESQLLNVNDIIRPEQSHYVSAMLAPGKR 135

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-----TVVLSNIRVIAID----- 180
           A T++++ +    G+++P + VDVV+    +    +      T VL  +R++AI      
Sbjct: 136 AVTLELTQAGVSHGLLRPGNWVDVVLTNESNVESASTPKYAATTVLEGVRLLAIGSVVTE 195

Query: 181 ----HNIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
                ++++            T E++P  AK L+ AQ +  LSLVLRS  + + +  E+ 
Sbjct: 196 FIAKQSVENGANPNSYEPVRVTFEVSPSDAKHLLLAQRLGVLSLVLRSQFESDLAEMEEG 255

Query: 235 DVWDVQEEGKE 245
            +   ++  + 
Sbjct: 256 SILWDEQVSES 266


>gi|221197780|ref|ZP_03570826.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2M]
 gi|221204662|ref|ZP_03577679.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2]
 gi|221175519|gb|EEE07949.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2]
 gi|221181712|gb|EEE14113.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2M]
          Length = 309

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 89/264 (33%), Gaps = 30/264 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M       I    +   V   I   ++     +   V     A  + ++I+   L  G  
Sbjct: 1   MTNNLTKIIAGLLIAIAVLLGIYAWMLGRSTPRPAPVQQTIAASPVPIVIATRTLPAGQP 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + L+    P   V  G   D         L G +    I    P+  + LV     G
Sbjct: 61  IAADALKIQ--PTSPVPAGAFADAS------TLVGRVPARDIPASSPVVSDALV----SG 108

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLS 172
           L+  +  G+RA  + +  ++AVG  ++P + VDV +               +    +++S
Sbjct: 109 LAEDVQPGERAVAVRVDETNAVGNRLRPGNFVDVFLNLKREGNAMLDGEVSQTQARLLMS 168

Query: 173 NIRVIAIDHNIDSDER----------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
            +RV+A        +                 A L +   Q  AL   ++  +L+L LR+
Sbjct: 169 KVRVLAFGDATPERDSGSNTNGSNAQPSNVRIAVLAVPTAQVDALTLGEASGRLTLALRN 228

Query: 223 IADLNPSSSEDSDVWDVQEEGKEI 246
             D   +    +   D +     +
Sbjct: 229 PRDDEMAMQTVAVRTDNKLSPSAL 252


>gi|330816714|ref|YP_004360419.1| Flp pilus assembly CpaB [Burkholderia gladioli BSR3]
 gi|327369107|gb|AEA60463.1| Flp pilus assembly CpaB [Burkholderia gladioli BSR3]
          Length = 305

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 30/251 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
                +  V     AL+ GI A  L               PAK   V+++   L  G  +
Sbjct: 3   NNLTKILAVALIAIALLLGIFAWVLGRKPAPVVNNAQQATPAKLFPVVVAARPLKGGQPI 62

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L+        + +G   D        ++ G +    + +   +    L    + G+
Sbjct: 63  PADGLKVQQ--AAALPEGAFADPV------QIVGRVPIADVPEQAAVLESSL----SSGV 110

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-------------- 167
           +  +  G+RA  + +  ++AVG  ++P + VDV +         T               
Sbjct: 111 ADQIAPGERAIAVKVDETNAVGNKVRPGNFVDVFLNLKKDSAAGTTLAGNGGSEVPKTQA 170

Query: 168 TVVLSNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSI 223
            ++LS IRVIA      + +          TA L +   Q  AL   ++   L+L LR+ 
Sbjct: 171 KLLLSRIRVIAFGDATTARDSSGGALNGVRTAVLAVPAAQVDALTLGEASGSLTLALRNP 230

Query: 224 ADLNPSSSEDS 234
            D   ++   +
Sbjct: 231 RDEEVATQTVA 241


>gi|33600810|ref|NP_888370.1| hypothetical protein BB1825 [Bordetella bronchiseptica RB50]
 gi|33568410|emb|CAE32322.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 313

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 89/259 (34%), Gaps = 34/259 (13%)

Query: 19  AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
           A  +     +P   +              V+++   +A G  +  ++L+   +P +    
Sbjct: 22  AAFMLATRPAPPPPKPVVQRASAALPTYPVVVAGKPIAAGDRLAADLLKIERWPVQPANG 81

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138
                       + L G +VR  I  G+P+    L      GL+  L  G+RA T+ +  
Sbjct: 82  YA--------ESEALLGQMVRQDIPAGEPVTAPMLA----RGLARHLAPGERAVTIAVDE 129

Query: 139 SSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRVIAIDHN-------------- 182
            S     I P D VDV +V             ++ S I+V+A                  
Sbjct: 130 LSGAQNRILPGDLVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPSV 189

Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
               +       A L +   +   L+ A    +L LVLRS  D++           +  E
Sbjct: 190 AQRGQPPAAPRNAMLAVPVERVNELLLAAKAGRLQLVLRSPEDVDVPD------LALFPE 243

Query: 243 GKEIQIIKAGVIVNKDGEG 261
              +  ++AG+   +  +G
Sbjct: 244 RAPVLALRAGLTAEQQRDG 262


>gi|115351455|ref|YP_773294.1| CpaB family Flp pilus assembly protein [Burkholderia ambifaria
           AMMD]
 gi|115281443|gb|ABI86960.1| Flp pilus assembly protein CpaB family [Burkholderia ambifaria
           AMMD]
          Length = 301

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 89/264 (33%), Gaps = 26/264 (9%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
                +   +    A++ GI A  L                A+ + ++++   L  G  +
Sbjct: 3   NNLTKIIAGLLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPLVVAARVLPAGQPI 62

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L+    P   +  G   D         L G +    IL   P+    L      GL
Sbjct: 63  PADALKLAQVP--MMPTGGFSDP------TALVGRVPANDILAAAPVLEGALT----SGL 110

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----------PTVTVVL 171
           +  +  G+RA  + +  S+AVG  ++P + VDV +                      ++L
Sbjct: 111 ADQVALGERAVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSEIPATQARLLL 170

Query: 172 SNIRVIAIDHNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           S +RV++        +          TA L +   Q  AL  A++  +L+L LR+  D  
Sbjct: 171 SRVRVLSFGDATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTE 230

Query: 228 PSSSEDSDVWDVQEEGKEIQIIKA 251
            ++   +            Q    
Sbjct: 231 IATQTVAVRTGGGGATPSAQAASG 254


>gi|330963439|gb|EGH63699.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 357

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 86/282 (30%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAK--------------- 44
           M     + + V  +  AL+AG + + +  P  V      +  P                 
Sbjct: 39  MSSRITLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPATPPVEE 98

Query: 45  --FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G  + +        L G      +
Sbjct: 99  ALRHNVVVLARDIPAYTPITAEDLVIERL--KVAPPGSFERIEI------LVGRSSWRTL 150

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G             G L+ ++   +RA  + +   +   G + P D+VDV++      
Sbjct: 151 TAGTWPSESSF--DAGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDA 208

Query: 163 RKPT--VTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202
             P+    VV+  +R++ I                  D     +++ +   T T+ +   
Sbjct: 209 SNPSRSSQVVVPALRILGIGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEA 268

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N       +        +
Sbjct: 269 LLARLMLASQTGILRLAVRSAEEGNLQDYWAGETGSRDAAER 310


>gi|331014709|gb|EGH94765.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 357

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAK--------------- 44
           M     + + V  +  AL+AG + + +  P  V      +  P                 
Sbjct: 39  MSSRITLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPVTPPVEE 98

Query: 45  --FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G  + +        L G      +
Sbjct: 99  ALRHNVVVLARDIPAYTPITAEDLAIERL--KIAPPGSFERIDS------LVGRSSWRTL 150

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G             G L+ ++   +RA  + +   +   G + P D+VDV++      
Sbjct: 151 TAGTWPSESSF--DAGGTLARMIRPYERALALQVDEVTGASGQLSPGDYVDVLLYLPEDA 208

Query: 163 RKPT--VTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202
             P+    VV+  +R++ +                  D     +++ +   T T+ +   
Sbjct: 209 SNPSRSSQVVVPALRILGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEA 268

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N      S+        +
Sbjct: 269 LLARLMLASQTGILRLAVRSAEESNLQDYWASETGSRDAAER 310


>gi|84385685|ref|ZP_00988716.1| hypothetical protein V12B01_26164 [Vibrio splendidus 12B01]
 gi|84379665|gb|EAP96517.1| hypothetical protein V12B01_26164 [Vibrio splendidus 12B01]
          Length = 274

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 100/268 (37%), Gaps = 25/268 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ + ++ +     G++ +    P    T EV+ E   + + V ++      G  
Sbjct: 1   MRSRLVLLVAITALIVGALGVVDLFKSEPQSTTTTEVVEEKNEEHVAVWMTTEPYEKGRA 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE-KLVDRGNG 119
           +    +     P        + +  Q +        L+   +  G+ +  E ++     G
Sbjct: 61  IDAQGVVKQQLPLSQALTLGVREDAQISFAPS---TLLNRSLNAGEVVLPEYQVTPGQPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPTV 167
            +  L+ +G     + +S  + +   I+P   +D++ V S ++            R    
Sbjct: 118 YIDLLVTEGMTLYPLKVSDKNLINDYIRPGTSIDILTVSSPNDNLAGNIDKPKRFRGVKA 177

Query: 168 TVVLSNIRVIAIDHNIDSD--------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           ++ L N++V+ I ++   D         +    +T  +E++P +   L  AQ    + + 
Sbjct: 178 SMFLKNVKVLNIGNDATGDSSITARAPSKEDGLTTVVIEVSPDELPKLALAQRTMHIEI- 236

Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
            RS     P  +E  ++ D      E++
Sbjct: 237 YRSQTYTQPEFAEVRNIIDNYTGIAELR 264


>gi|330976800|gb|EGH76835.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 329

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 93/282 (32%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45
           M     M + V  +  AL+AG + + +  P  V  E   +  P                 
Sbjct: 11  MSSRVTMVLAVLFLLGALIAGYLGIVVGRPTEVPVETPPSAPPVTTKQTTPPAPTPHVEE 70

Query: 46  ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T + L       +    G         A+ ++ G      +
Sbjct: 71  ALRHNVVVLAKDIPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTL 122

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +          G L+ ++   +RA  + +   +   G + P D+VDV++      
Sbjct: 123 TAGSWLTESNF--EAGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 180

Query: 163 RKP--TVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202
             P  +  VV+  +RV+ +                  D  +  +++ +   T T+ +   
Sbjct: 181 SNPNRSSQVVVPALRVLGVGALLGPDRNGKPVQDLNADERLKQEQQRINARTVTVAVPQA 240

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N      ++    +   +
Sbjct: 241 LVARLMLASQTGVLRLAVRSADEGNLQDYWANEAGGPEAAER 282


>gi|148975961|ref|ZP_01812750.1| hypothetical protein VSWAT3_06606 [Vibrionales bacterium SWAT-3]
 gi|145964706|gb|EDK29959.1| hypothetical protein VSWAT3_06606 [Vibrionales bacterium SWAT-3]
          Length = 274

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 101/268 (37%), Gaps = 25/268 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ + ++ +     G+I +    P    T+EV+ E   K + V IS      G  
Sbjct: 1   MRSRLVLLVAIAALIIGALGVIDLFKSEPKPTTTDEVVAEKSEKHVGVWISTESFEKGHA 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           +    +     P        + +  Q +    +   L+   +  GD +  E  V     G
Sbjct: 61  INAQGVVKQQLPLSEALTLGVREDAQISFSPSI---LLNRNLKAGDVVLPEYQVSPGKPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPTV 167
            +  L+ +G     + +S  + +   I+P   +DV+ V S +             R    
Sbjct: 118 YIDLLVTEGMTLYPLKVSDKNLINDYIRPGSFIDVLTVSSPNANLAGNIDKPKRFRGVKA 177

Query: 168 TVVLSNIRVIAIDHNIDSD--------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           ++ L +++V+ I ++   D         +    +T  +E++P +   L  AQ    + + 
Sbjct: 178 SMFLKHVKVLNIGNDDTGDSSITARSPSKEDGLTTVVIEVSPDELPKLALAQRTMHIEI- 236

Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
            RS   L P  +E  ++ D      E++
Sbjct: 237 YRSQHYLQPEFAEVRNIIDNYTGIVELR 264


>gi|87308905|ref|ZP_01091043.1| pilus assembly protein CpaB [Blastopirellula marina DSM 3645]
 gi|87288248|gb|EAQ80144.1| pilus assembly protein CpaB [Blastopirellula marina DSM 3645]
          Length = 299

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 102/270 (37%), Gaps = 24/270 (8%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M  VV+ +F L++  +  + +        E  T  P K   V  +  +L  G  +T   +
Sbjct: 1   MLGVVAVMFGLLSAYVVRKNMMKETPPVVE--TTAPPKTFVVPKAAVNLPAGRTLTLGDV 58

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLL 125
               + E+ + +  +   +  NA  ++ G  +R  + +      +     G G G+   L
Sbjct: 59  VIYQYTEKQLEEQPLPTGYMVNA-TQIIGRTLRQELTEKSVFTPDMFYPEGTGPGIVQNL 117

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSNIRVIAIDHN 182
             G+RA T+ I    AV G  +P   VDV+                 +L +++V+A D +
Sbjct: 118 GAGQRAFTVRIEYDEAVEGFARPGTKVDVLFRAEADPENELAETTVTLLQDVKVLAFDSS 177

Query: 183 I----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
                          R+   +T TL + P +A  L  A      +L L    D    S  
Sbjct: 178 PSALHPIVNEQSQRLRMREYATVTLAVLPHEATKLQVADDHGTFALALV-PLDGEVVSYN 236

Query: 233 D-----SDVWDVQEEGKE-IQIIKAGVIVN 256
                 +++ D +   ++ +++ + G I  
Sbjct: 237 GAPRTLAELLDRRPPLRQMMRVYRGGQISE 266


>gi|160942271|ref|ZP_02089580.1| hypothetical protein CLOBOL_07157 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434828|gb|EDP12595.1| hypothetical protein CLOBOL_07157 [Clostridium bolteae ATCC
           BAA-613]
          Length = 289

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 82/217 (37%), Gaps = 19/217 (8%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G++ + L          +     ++   ++    ++ +G  +T ++++ V     N+ 
Sbjct: 9   VIGLLCIVLSLVICFAITPMFNRTISEKTEIVRVTKNIRIGDEITKDMVKPVEVGAYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           +  + ++       E+ G      +  GD I   K+ +      + L  L   K+A ++ 
Sbjct: 69  ESVVRNID------EVIGKYASADMAPGDYIIRSKVAEEPAAENAYLYNLNGEKQAISVS 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184
           +   ++ + G +   D V V+      +    +   L  + VIA+              D
Sbjct: 123 VKAFANGLSGKLVSGDIVSVIAPDYRKQGSTVIPPELQYVEVIAVTANSGYDANTGERGD 182

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            +    +  T TL +TP Q + L   ++  KL L L 
Sbjct: 183 EETEKELPGTVTLLVTPDQGRVLAELEADGKLHLSLV 219


>gi|28871965|ref|NP_794584.1| hypothetical protein PSPTO_4850 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855218|gb|AAO58279.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 357

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAK--------------- 44
           M     + + V  +  AL+AG + + +  P  V      +  P                 
Sbjct: 39  MSSRITLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPVTPPVEE 98

Query: 45  --FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G  + +        L G      +
Sbjct: 99  ALRHNVVVLARDIPAYTPITAEDLAIERL--KIAPPGSFERIDS------LVGRSSWRTL 150

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G             G L+ ++   +RA  + +   +   G + P D+VDV++      
Sbjct: 151 TAGTWPSESSF--DAGGTLARMIRPYERALALQVDEVTGASGQLSPGDYVDVLLYLPEDA 208

Query: 163 RKPT--VTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202
             P+    VV+  +R++ +                  D     +++ +   T T+ +   
Sbjct: 209 SNPSRSSQVVVPALRILGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEA 268

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N      S+        +
Sbjct: 269 LLARLMLASQTGILRLAVRSAEESNLQDYWASETGSRDAAER 310


>gi|163857692|ref|YP_001631990.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804]
 gi|163261420|emb|CAP43722.1| putative Flp pilus assembly protein [Bordetella petrii]
          Length = 320

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 33/228 (14%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              V+++  D+  G  +   +L+   +P                  ++L G + R+ I  
Sbjct: 54  TYPVVLAAKDIQAGTRLDAGMLKVQQWPIPLAHGYA--------KPEDLAGQVARLDIAG 105

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER- 163
           G+PI  + L      GL+  L  G+RA  + +      G  I P D VDV          
Sbjct: 106 GEPITNQSLAQ----GLAQQLRDGERAVAVPVDEIVGAGNRITPGDLVDVFFALEKDNEV 161

Query: 164 -KPTVTVVLSNIRVIAIDHN-------------IDSDERVLVGSTATLELTPMQAKALVA 209
               V ++ S +RV+A                 +          +A L +   +   L+ 
Sbjct: 162 KGSQVRLLQSRVRVLAYGAQSIDGPPVASDKPVVQRGASPAPARSALLAVPVERVNELLL 221

Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
           A     L L LR+ +D            D+    + +   +AG+   +
Sbjct: 222 ASRSGHLQLALRAPSDEALPD------RDLFVPREAVISARAGLTAEQ 263


>gi|254252521|ref|ZP_04945839.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158]
 gi|124895130|gb|EAY69010.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158]
          Length = 308

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 94/262 (35%), Gaps = 34/262 (12%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
             + G++++    L A    +   SP      +++  NP  F+   I+   L  G  +  
Sbjct: 7   KIIAGLLIAIAVLLGAYAWMLGRSSPAPAPAPQIVAANPMPFV---IATRTLPAGQPIAA 63

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           + L+  +    ++  G   +        E+ G +    I    PI    LV     GL+ 
Sbjct: 64  DALKVQS--TTSIPAGAFANP------GEVVGRVPAKDIAASSPIVAGALV----SGLAE 111

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---------PTVTVVLSNI 174
            +  G+RA  + +  ++AV   ++P + VDV +                     ++LS +
Sbjct: 112 DVQPGERAVAIRVDETNAVANRLRPGNFVDVFLNLKRDGGGAMLDGEISQTQARLLLSRV 171

Query: 175 RVIAIDHNIDSDER----------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           RV++        +                 A L +   Q  AL   ++  +L+L LR+  
Sbjct: 172 RVLSFGDATPERDSGSSTNGSNGQPSSVRIAVLAVPTAQVDALTLGEASGRLTLALRNPR 231

Query: 225 DLNPSSSEDSDVWDVQEEGKEI 246
           D   ++   +   D +     +
Sbjct: 232 DDELATQTVAVRTDNKRSPSAL 253


>gi|83719123|ref|YP_443060.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis
           E264]
 gi|83652948|gb|ABC37011.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           E264]
          Length = 292

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 91/265 (34%), Gaps = 27/265 (10%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           +    A++ GI A  L                   + V+++   L  G  +  + L+   
Sbjct: 1   MLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADALKVQQ 60

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
            P                    + G +    I+   P+   +L+     GL+  +  G+R
Sbjct: 61  TPAPIA--------GAFPNPTLVTGRIPANDIVAQAPVLESELM----SGLADQIAPGER 108

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAIDH 181
           A  + +  ++AVG  ++P + VDV +                +    ++LS +RV++   
Sbjct: 109 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVLSFGD 168

Query: 182 NIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
                +           TA L +   Q  AL  A++  +L L LRS  D + + +    +
Sbjct: 169 ATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDDDVA-TRTVAM 227

Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEG 261
                 G   +     V+    G G
Sbjct: 228 RASGAGGPSNEAATGLVLGELSGSG 252


>gi|291525761|emb|CBK91348.1| Flp pilus assembly protein CpaB [Eubacterium rectale DSM 17629]
          Length = 282

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 19/226 (8%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V GI  + +          ++    +K + ++     +     +T ++L+ V     N+ 
Sbjct: 9   VLGIFCIAVSLIICFAITPLVNAGLSKKVTIVRFNRQVNEREEITRSMLDEVEVGNHNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           +  I ++       +++G  +   +  GD I  +K+ D        L  L   K+A ++ 
Sbjct: 69  ENVIRNIA------DVEGKYLTTTVYAGDYILTDKISDEPAAENKYLYSLNGEKQAMSIT 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184
           I+  +  + G +K  D V V+    L   +  + V L  + VIA+             + 
Sbjct: 123 INTFAEGLSGKLKSGDIVSVIAPDYLGSGETIIPVELKYVEVIAVTAKSGYDANTGEQMS 182

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
            ++   + ST T+ + P Q+K L   ++  ++ L L    D + +S
Sbjct: 183 EEDEKELPSTVTILVRPEQSKLLARLEAEGEIHLSLVFRGDADKAS 228


>gi|253687067|ref|YP_003016257.1| Flp pilus assembly protein CpaB [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753645|gb|ACT11721.1| Flp pilus assembly protein CpaB [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 314

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 98/272 (36%), Gaps = 44/272 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+     +  + V A +  ++    +S         +     + I VL++  DL  G  
Sbjct: 1   MKVNSTYVLSGAFVLAGIVALVVRSHLSS-EPPAPPPVVAKAPEKIAVLVAAKDLHPGDF 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +  + + W    E                +  L G  +R  + +G  +    +V     G
Sbjct: 60  IDSSSVRWQTTDESVSRSFNFVRGRDSQFL--LFGATLRETVKEGTQLSSNVVVKPNEPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------- 166
            ++++L KG RA ++  S  ++  G++   D VDV++     ++                
Sbjct: 118 FVAAVLHKGMRAISVPTSAIASNAGLVSAGDRVDVILSMRRDDQSELPVSRNQPVVMPLL 177

Query: 167 -VTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199
               ++ ++RV+A++  + +                            R     T TLE+
Sbjct: 178 ASQTIVRDLRVLALNDKVGTPVYPRLDAMEDGAALDAAAKSRESAVRSRPATYQTVTLEV 237

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           TP QA+AL  A+ +  L L LRS    +    
Sbjct: 238 TPQQAEALTVAKELGILHLSLRSATQDDVVDP 269


>gi|167836690|ref|ZP_02463573.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           MSMB43]
          Length = 351

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 29/245 (11%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++ +  +    V A +   +   L     +     +         V  +  DL  G+++ 
Sbjct: 1   MSNIFKLAALTVIAAIGAFVMRGLF----IAASRPVPPPAPVMARVRAAAADLPEGLLLR 56

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121
            + L W + P + V  G   +        +L G L+R  + +G PI    ++     G L
Sbjct: 57  DSDLVWKSVPRDQVPPGAWAEGEP--GGSDLKGNLLRHMVREGTPIGAGDVISPNAPGFL 114

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---------LSERKPTVTVVLS 172
           ++ L  G RA ++ I   S   G+I+P D+VDV++ +            +       V S
Sbjct: 115 AAALKLGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLGTSGGPPVPPDHAIVSETVAS 174

Query: 173 NIRVIAIDHNIDSDERVLV-------------GSTATLELTPMQAKALVAAQSVAKLSLV 219
            +RV+A+       +                   T TLE+TP  A+A+  A  +  LSL 
Sbjct: 175 RVRVLAVGSVFQRPKDDAAQTNSNSNSNSSARARTVTLEVTPFYAQAITLASHLGSLSLA 234

Query: 220 LRSIA 224
           LRS A
Sbjct: 235 LRSFA 239


>gi|226325180|ref|ZP_03800698.1| hypothetical protein COPCOM_02972 [Coprococcus comes ATCC 27758]
 gi|225206528|gb|EEG88882.1| hypothetical protein COPCOM_02972 [Coprococcus comes ATCC 27758]
          Length = 497

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 12/227 (5%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
               G+ V  V A    ++         +     I E  +    V+ +   +  G  ++ 
Sbjct: 278 KVTAGLAVIAVLAGGVAVV-------SEIDANNRIAEAFSGTTEVVAATKTIHAGDEISA 330

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR-LEKLVDRGNGGLS 122
           + L +V+ P   V DG I      ++ +   G +    I KG  +             L+
Sbjct: 331 SDLAFVSVPNSTVADGAITKKDIDDSSKTPVGRVATQYIAKGSQLTNASTAGKDNPESLA 390

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID-H 181
           + +  G  A T+ +   S +GGM++ ND V V+     S      TV+  ++R+ A+D +
Sbjct: 391 AAIGDGMEAVTISVDAQSGMGGMLRVNDRVKVIQPNDGSLGGDGFTVIADSVRIAALDGN 450

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
                      ST TLE+TP QA  +   ++   L+L L S AD   
Sbjct: 451 FSSGSGSSDGYSTVTLEVTPEQAGKI---RTAGGLTLTLPSSADTTE 494


>gi|91775996|ref|YP_545752.1| Flp pilus assembly CpaB [Methylobacillus flagellatus KT]
 gi|91709983|gb|ABE49911.1| Flp pilus assembly CpaB [Methylobacillus flagellatus KT]
          Length = 299

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 100/276 (36%), Gaps = 36/276 (13%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           + + +  + A ++    +   H    +     PA    +++++ D+  G V+ P  L   
Sbjct: 8   ITAILLFIGAVLVGWYGIRAGHQPEIQAPAPLPAVLYPLVVARQDIPAGHVLLPEDLALE 67

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
               +        +    +A  +L G +V   I K  PI          G  + LL  G+
Sbjct: 68  ESESQ--------NPLAYSATTDLVGRMVESSIEKNAPILSSHFA--QRGPAAQLLKHGE 117

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAIDHNIDS- 185
           R   + +     VGG I+P DHVDV++  + S       +   +L ++RVI+    +   
Sbjct: 118 RGVAIKVDEVVGVGGFIQPGDHVDVLVYINSSNGMTTDSSAQSILRDVRVISYGDALQQN 177

Query: 186 ---------------------DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
                                  + L G +A + +       L+ A S   L L LR  +
Sbjct: 178 VSSSNVSPGPASMLADNGSTSKPQALSGHSAVIAVKEEDVSRLMLAASGGTLRLSLRGAS 237

Query: 225 -DLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259
            D+   SS+   + ++    + ++      +V    
Sbjct: 238 PDVAKKSSDLVRLSEITGSQQPVKAPSLPKVVKAAP 273


>gi|134295594|ref|YP_001119329.1| SAF domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134138751|gb|ABO54494.1| SAF domain protein [Burkholderia vietnamiensis G4]
          Length = 314

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 90/264 (34%), Gaps = 32/264 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
                +   +    A++ G  A  ++      +        A    V+I+   L  G  +
Sbjct: 3   NNVTKIIAGLLIAIAVLLGFYAW-MLGRSASHSVPAQPAVAANPAPVVIATRTLPAGQPI 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + ++  A    +V  G + D         + G +    I    PI  + LV     GL
Sbjct: 62  AADAVKLQAI--ASVPTGAVVDPA------TVVGRVPARDIPASAPITPDALV----SGL 109

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---------PTVTVVLS 172
           +  +  G+RA  + +  ++AVG  ++P + VDV +                     +++S
Sbjct: 110 AEDIQPGERAIAVRVDETNAVGNRLRPGNFVDVFLNLKREGGGAMFDGEVSQTQARLLMS 169

Query: 173 NIRVIAIDHNIDSDER----------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
            +RV++        +                 A L +   Q  AL   ++  +L+L LR+
Sbjct: 170 KVRVLSFGDATPERDSGSTTNGSNGQPSNARIAVLAVPTAQVDALTLGEATGRLTLALRN 229

Query: 223 IADLNPSSSEDSDVWDVQEEGKEI 246
             D   +    +   D +     +
Sbjct: 230 PRDDELAMQTVAVRTDNKLSPSAL 253


>gi|187251613|ref|YP_001876095.1| pilus assembly protein [Elusimicrobium minutum Pei191]
 gi|186971773|gb|ACC98758.1| Pilus assembly protein [Elusimicrobium minutum Pei191]
          Length = 253

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 99/259 (38%), Gaps = 32/259 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK    + +V++ + A+V  II             +   E  +K   V+I+  DL    V
Sbjct: 1   MKKGVFLPLVIAILAAVVYFIILFS---------NQSKFEENSKLERVVIAIRDLPERKV 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNG 119
           +T   L  +  P + +           +  +  + ++ R+ I KG+ +    L       
Sbjct: 52  ITKGDLGVIEMPNKFLQKDAFTVTRDSDITKLENNLVTRIAIPKGNQVSKAALTSLSPEA 111

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-----SERKPTVTVVLSNI 174
           GLS+ +    R   +   + S+V  +IKP+D VDV++          +++     +L  I
Sbjct: 112 GLSARVSPLWRGF-VLTDVPSSVANLIKPDDWVDVLLTFDAYMKNTGQKEKITATILQRI 170

Query: 175 RVIAIDHNIDSDERVLV----------------GSTATLELTPMQAKALVAAQSVAKLSL 218
           +V+ + +++                         S  +L L P  A+ L  A+    ++L
Sbjct: 171 KVLGVGNDLGQGMDANQLRATREREASASAFNDSSAISLALHPRDAQYLALAKEEGIITL 230

Query: 219 VLRSIADLNPSSSEDSDVW 237
           V+R   D    S   + + 
Sbjct: 231 VVRRREDQGVHSIAIASLT 249


>gi|167628702|ref|YP_001679201.1| hypothetical protein HM1_0585 [Heliobacterium modesticaldum Ice1]
 gi|167591442|gb|ABZ83190.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 270

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 82/226 (36%), Gaps = 19/226 (8%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G+I + L          +     +K  +++    D+  G  +T ++++ V     N+ 
Sbjct: 9   VLGVICIALSLFICFAVTPLFNSGISKKTDIVRVARDIKAGEQITRDMVKTVEVGSYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           D  +       ++    G      +  GD I   KL D      + L  L   K+A ++ 
Sbjct: 69  DNVVR------SLDAALGKYAAADMAPGDYILNTKLTDSPAAENAYLYNLTGEKQAMSVT 122

Query: 136 I-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVL---- 190
           I S S+ + G +   D V V+           +   L  + VI +  +   D        
Sbjct: 123 IKSFSNGLSGKLISGDIVSVIAPDYRKMGATVIPPELKYVEVIGVTASSGYDTDTSHGLK 182

Query: 191 ------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
                 + +T TL ++P Q+  L   ++  KL L L        ++
Sbjct: 183 KEDEKQLPATVTLLVSPEQSTILAGLEADGKLHLSLVYRGSKENAA 228


>gi|156977410|ref|YP_001448316.1| hypothetical protein VIBHAR_06197 [Vibrio harveyi ATCC BAA-1116]
 gi|156529004|gb|ABU74089.1| hypothetical protein VIBHAR_06197 [Vibrio harveyi ATCC BAA-1116]
          Length = 274

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 103/268 (38%), Gaps = 25/268 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ + ++ +     G++ +   +P      EV+ +   +++ V ++      G  
Sbjct: 1   MRSRLVLLVAIAALIVGALGVVDLFKSNPQPKANTEVVEKPNEEYVAVWVTTKAYEKGHA 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
                +    FP        + +  Q N    +   L+   + KG  +  E  V  G  G
Sbjct: 61  FDAQGVAKQQFPLSEALVLGVREDAQINFSPSV---LLNRSLEKGAVVLPEYQVSPGQAG 117

Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPTV 167
            +  L+ +G     +++S  + +   I+P  ++D++ V S ++            R    
Sbjct: 118 YIDLLVTEGMTLYPLEVSDQNLINDYIRPGSYIDILTVSSPNDNLAKNIDKPKRFRGLKA 177

Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGS--------TATLELTPMQAKALVAAQSVAKLSLV 219
           ++ L +++V+ I  + + D  V   S        T  +E+ P     L  AQ    + + 
Sbjct: 178 SMFLKHVKVLNIGGDDEGDSSVTARSPINEDGLTTVVIEVKPDDLAKLALAQRTMHIEI- 236

Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
            RS     P  +E  +V D     +E++
Sbjct: 237 YRSQTYNKPEYAEVRNVIDNYTGIEELR 264


>gi|228969250|ref|ZP_04130128.1| hypothetical protein bthur0004_59710 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228790443|gb|EEM38166.1| hypothetical protein bthur0004_59710 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 286

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++      + V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIVAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +         +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L +G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKEGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVIEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|220930147|ref|YP_002507056.1| SAF domain protein [Clostridium cellulolyticum H10]
 gi|220000475|gb|ACL77076.1| SAF domain protein [Clostridium cellulolyticum H10]
          Length = 294

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 24/229 (10%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G+I + L          +   + ++   ++    D+  G  +T N+++ V     N+ 
Sbjct: 9   VLGVICILLSLVICFAVTPLFNSSISQRTKIVRVSRDIKAGDKITGNMVQIVEVGSYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
            G I +        +  G      +  GD I   KL        S L  L   K+A ++ 
Sbjct: 69  SGVIKNKD------DAIGKYASADMKTGDYIFNTKLSAAPAAENSYLYSLNGEKQAMSVT 122

Query: 136 I-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV--- 191
           + S +S + G +   D V V+     ++    +   L  + VI +  +   D        
Sbjct: 123 VGSFASGLSGKLMSGDIVSVIAPDYKNQGTAVIPEELQYVEVIGVTASTGYDTNTSENTE 182

Query: 192 ----------GSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNP 228
                      ST TL ++ +Q+K L A +S  KL L L  R I +   
Sbjct: 183 KQTGNKEKELPSTVTLLVSAVQSKTLAALESDGKLHLSLVYRGIKENAE 231


>gi|213968017|ref|ZP_03396163.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301383667|ref|ZP_07232085.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059964|ref|ZP_07251505.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tomato
           K40]
 gi|302131630|ref|ZP_07257620.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927360|gb|EEB60909.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 357

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 88/282 (31%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAK--------------- 44
           M     + + V  +  AL+AG + + +  P  V      +  PA                
Sbjct: 39  MSSRITLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPAAIEQPAQTPVTPPVEE 98

Query: 45  --FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G  + +        L G      +
Sbjct: 99  ALRHNVVVLARDIPAYTPITVEDLAIERL--KIAPPGSFERIDS------LVGRSSWRTL 150

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G             G L+ ++   +RA  + +   +   G + P D+VDV++      
Sbjct: 151 TAGTWPSESSF--DAGGTLARMIRPYERALALQVDEVTGASGQLSPGDYVDVLLYLPEDA 208

Query: 163 RKPT--VTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202
             P+    VV+  +R++ +                  D     +++ +   T T+ +   
Sbjct: 209 SNPSRSSQVVVPALRILGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEA 268

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N      S+        +
Sbjct: 269 LLARLMLASQTGILRLAVRSAEESNLQDYWASETGSRDAAER 310


>gi|113867003|ref|YP_725492.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16]
 gi|113525779|emb|CAJ92124.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16]
          Length = 343

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 106/262 (40%), Gaps = 30/262 (11%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            +  +     +S      +E +       + + V++   + A G V+  N       P +
Sbjct: 26  GLLTLWIYHFLSGREAALKEQLAAQLNEGRRVAVMVPVRNAAPGTVIDGNGFAAREIPAD 85

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATM 134
            V++  I      ++  ++  + +   + +G P+R   +    +   S LL  GKRA T+
Sbjct: 86  LVYEDMI----LASSFDKVANLRLVRQVRQGQPVRRADVEALQSRDFSDLLKPGKRAFTI 141

Query: 135 DISISSAVGGMIKPNDHVDVVMVRSLS-----ERKPTVTVVLSNIRVIAIDHNIDSDERV 189
           ++ + ++   M+KP +HVD+ ++ S S       K T  +++S++ V+A   ++   +  
Sbjct: 142 EVDMVNSTAKMLKPGNHVDLFLISSTSPTAAGTDKQTARLLMSDMLVLATGQDVRPRDYG 201

Query: 190 LV-----------------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
                                + TL ++P QA  L  AQ V  L  VLR+ AD   +   
Sbjct: 202 EAMAAQAAEGAEGVDTNPDYDSLTLMVSPEQAARLALAQKVGSLRAVLRNAADKTATPQI 261

Query: 233 DSDVWDVQEEGKE--IQIIKAG 252
                 +   G E  I+ I  G
Sbjct: 262 AVSEHALFAGGDEAAIEYIVGG 283


>gi|187926426|ref|YP_001892771.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J]
 gi|241665913|ref|YP_002984272.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D]
 gi|187728180|gb|ACD29344.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J]
 gi|240867940|gb|ACS65600.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D]
          Length = 307

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 90/244 (36%), Gaps = 28/244 (11%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
             S H         ++      V+++   L  G  +T + +     P          DV 
Sbjct: 25  WKSAHRPPAPVAEQKDGKAVYPVVVTTKPLEAGKPITADQVAIEQLPIN--PAEAFSDV- 81

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
                 ++ G    +P+  G P+   +L    + GL+  +  G+RA  +++     VG  
Sbjct: 82  -----TKVVGREPILPVGVGVPLIASQL----SSGLAQQVEAGQRAVAINVDEVVGVGNR 132

Query: 146 IKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDE------------RVL 190
           + P D+VDV +V     ++       ++L ++RV+A      ++             +V 
Sbjct: 133 VMPGDYVDVFLVMRKDGQEIEDSQARLLLPHLRVLAFGPLAINEGPQKQPENSGVTRKVD 192

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK-EIQII 249
              TA L +       L  A    +L L LR+  D    + +  D   +    +  + + 
Sbjct: 193 QAKTAVLAVPVEAVSQLAMAHQSGRLLLALRNPGDDAEPTVKPQDAALLAAANRNPMDVA 252

Query: 250 KAGV 253
           +AGV
Sbjct: 253 QAGV 256


>gi|309778770|ref|ZP_07673543.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA]
 gi|308922478|gb|EFP68102.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA]
          Length = 307

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 91/244 (37%), Gaps = 28/244 (11%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
             S H         ++      V+++   L  G  +T + +     P          DV 
Sbjct: 25  WKSAHRPPAPVAEQKDGKAVYPVVVTTKPLEAGKPITADQVAIEQLPIN--PAEAFSDV- 81

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
                 ++ G    +P+  G P+   +L    + GL+  +  G+RA  +++     VG  
Sbjct: 82  -----TKVVGREPILPVGVGVPLIASQL----SSGLAQQVEAGQRAVAINVDEVIGVGNR 132

Query: 146 IKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDE------------RVL 190
           + P D+VDV +V     ++       ++L ++RV+A      ++             +V 
Sbjct: 133 VMPGDYVDVFLVMRKDGQEIEDSQARLLLPHLRVLAFGPLAVNEGPQKQPESNNVTRKVD 192

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK-EIQII 249
              TA L +       LV A    +L L LR+  D    + +  D   +    +  + + 
Sbjct: 193 QAKTAVLAVPVEAVSQLVMAHQSGRLLLALRNPGDDAEPTVKPQDAALLAAANRNPMDVA 252

Query: 250 KAGV 253
           +AGV
Sbjct: 253 QAGV 256


>gi|330989177|gb|EGH87280.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 319

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 84/282 (29%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45
           M       + V  +  AL+AG + + +  P            P                 
Sbjct: 1   MSSRITTVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPVATEISTQTPPTPPVED 60

Query: 46  ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G          + +L G      +
Sbjct: 61  ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSTWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +          G L+ ++   +RA  + +       G + P D+VDV++      
Sbjct: 113 TAGTWLSENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170

Query: 163 RKP--TVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202
                +  VV+  +RV+ +                  D  +  +++ +   T T+ +   
Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPET 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N      S+        +
Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNIQDYWASEAGSRDAAER 272


>gi|330873640|gb|EGH07789.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 319

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAK--------------- 44
           M     + + V  +  AL+AG + + +  P  V      +  P                 
Sbjct: 1   MSSRITLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPATPPVEE 60

Query: 45  --FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G  + +      + L G      +
Sbjct: 61  ALRHNVVVLARDIPAYTPITAEDLIIERL--KVAPPGSFERI------ESLVGRSSWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G             G L+ ++   +RA  + +   +   G + P D+VDV++      
Sbjct: 113 TAGTWPSESSF--DAGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDA 170

Query: 163 RKPT--VTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202
             P+    VV+  +RV+ +                  D     +++ +   T T+ +   
Sbjct: 171 SNPSRSSQVVVPALRVLGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N       +        +
Sbjct: 231 LLARLMLASQTGILRLAVRSAEEDNLQDYWAGETGSRDAAER 272


>gi|208702085|ref|YP_002267403.1| Flp pilus assembly protein CpaB [Bacillus cereus H3081.97]
 gi|208657940|gb|ACI30310.1| Flp pilus assembly protein CpaB [Bacillus cereus H3081.97]
          Length = 286

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 87/242 (35%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++      + V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIVAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +         +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----VNKKEIVGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KKELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|330892475|gb|EGH25136.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. mori str.
           301020]
          Length = 319

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 82/282 (29%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45
           M     M + V  +  AL+AG + + +  P            P                 
Sbjct: 1   MSSRITMVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPVATEISTQTPPTPPVED 60

Query: 46  ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G          + +L G      +
Sbjct: 61  ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSTWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +          G L+ ++   +RA  + +       G + P D+VDV++      
Sbjct: 113 TAGTWLSENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170

Query: 163 RKP--TVTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPM 202
                +  VV+  +RV+ +   +  D                         T T+ +   
Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N  +   S+        +
Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272


>gi|44004393|ref|NP_982061.1| hypothetical protein BCE_A0054 [Bacillus cereus ATCC 10987]
 gi|190015216|ref|YP_001966616.1| hypothetical protein pPER272_AH820_0071 [Bacillus cereus]
 gi|190015481|ref|YP_001966942.1| hypothetical protein pPER272_0071 [Bacillus cereus]
 gi|190015561|ref|YP_001967244.1| hypothetical protein BcAH187_pCER270_0101 [Bacillus cereus]
 gi|217956754|ref|YP_002335848.1| Flp pilus assembly protein CpaB [Bacillus cereus AH187]
 gi|218848261|ref|YP_002454968.1| Flp pilus assembly protein CpaB [Bacillus cereus AH820]
 gi|229020887|ref|ZP_04177586.1| hypothetical protein bcere0030_53460 [Bacillus cereus AH1273]
 gi|229027753|ref|ZP_04183934.1| hypothetical protein bcere0029_59380 [Bacillus cereus AH1272]
 gi|229035191|ref|ZP_04189127.1| hypothetical protein bcere0028_52090 [Bacillus cereus AH1271]
 gi|229113409|ref|ZP_04242860.1| hypothetical protein bcere0018_55820 [Bacillus cereus Rock1-15]
 gi|229142563|ref|ZP_04271044.1| hypothetical protein bcere0013_56190 [Bacillus cereus BDRD-ST26]
 gi|229164946|ref|ZP_04292761.1| hypothetical protein bcere0009_56190 [Bacillus cereus R309803]
 gi|42741459|gb|AAS44904.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gi|116584468|gb|ABK00585.1| hypothetical protein BcAH187_pCER270_0101 [Bacillus cereus]
 gi|116584892|gb|ABK01007.1| hypothetical protein pPER272_AH820_0071 [Bacillus cereus]
 gi|116585162|gb|ABK01271.1| hypothetical protein pPER272_0071 [Bacillus cereus]
 gi|217068624|gb|ACJ82872.1| Flp pilus assembly protein CpaB [Bacillus cereus AH187]
 gi|218540312|gb|ACK92708.1| Flp pilus assembly protein CpaB [Bacillus cereus AH820]
 gi|228618530|gb|EEK75541.1| hypothetical protein bcere0009_56190 [Bacillus cereus R309803]
 gi|228640857|gb|EEK97207.1| hypothetical protein bcere0013_56190 [Bacillus cereus BDRD-ST26]
 gi|228670023|gb|EEL25415.1| hypothetical protein bcere0018_55820 [Bacillus cereus Rock1-15]
 gi|228728083|gb|EEL79123.1| hypothetical protein bcere0028_52090 [Bacillus cereus AH1271]
 gi|228733545|gb|EEL84348.1| hypothetical protein bcere0029_59380 [Bacillus cereus AH1272]
 gi|228740419|gb|EEL90718.1| hypothetical protein bcere0030_53460 [Bacillus cereus AH1273]
          Length = 286

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 87/242 (35%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++      + V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIVAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +         +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----VNKKEVVGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|168703131|ref|ZP_02735408.1| flp pilus assembly protein [Gemmata obscuriglobus UQM 2246]
          Length = 442

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 99/268 (36%), Gaps = 34/268 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++ +VV+    LVA  +  ++               P + + V+++  DL VG +
Sbjct: 1   MKQKNVILMVVAVGCGLVAAFLTAQMS------------AKPIEQMEVVVAAKDLPVGTM 48

Query: 61  VTPNIL----EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           +    L    + V  P+E +    + +       +EL    +  PI   + I  + L   
Sbjct: 49  LGKEDLKAAVKIVKRPKEGLPPTVVLNP------EELVDKRLSRPIRAEEVINSQDLSK- 101

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
              G    LP+G    ++ +    A  G + P   V+V     L   K     +L ++ V
Sbjct: 102 ---GGVITLPEGYHMVSLQLGAGQAAAGFVGPGSRVNVHATMRL-GNKIEAFPLLVDMLV 157

Query: 177 IAIDHNIDSDERVLVGST--ATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSED 233
           +A+       +     +    +  +   QA  L  A+S    + L+LR   +   S    
Sbjct: 158 VAVGTETAYSKEGTFPNLNMVSFAVQEKQALLLSLAKSRGCNIELMLRHPGESIESD--- 214

Query: 234 SDVWDVQEEGKEIQIIKAGVIVNKDGEG 261
              +++ E  K++   K    V   GE 
Sbjct: 215 -KAFNIDEVIKKLSDEKNPAQVTGAGES 241



 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 30  HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNA 89
                ++     P   + VL++K D+     +T +++    F E  +   F         
Sbjct: 264 TPPAPQQKPEPPPIPMVKVLVAKSDIKPNTEITADLIR-EEFEEATLPKQF--AGGALGD 320

Query: 90  MQELDGVLVRVPILKGDPIRLEKLVDRGN 118
           + E  G  +R  + KG  +    +  +  
Sbjct: 321 LNEALGQFLRTGVAKGQWVTPGMVGIQSP 349


>gi|59713402|ref|YP_206177.1| tungstate-binding protein precursor [Vibrio fischeri ES114]
 gi|59481650|gb|AAW87289.1| tungstate-binding protein precursor [Vibrio fischeri ES114]
          Length = 261

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 102/270 (37%), Gaps = 22/270 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++ + +  +   + G+     +       + +I       I V   K ++     
Sbjct: 1   MKAKIIVVLAMITILFGLYGLAGSLSM----FAPQNIIKPKEENKIKVWQLKENVNARDE 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119
           +   ++  V  PE         +      +    G + R  + KGD I +E  +    + 
Sbjct: 57  INRRLVSLVLLPESEANKLSFSED---VPINWNRGTIYRHDLKKGDYISMEDFITPEEDN 113

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---------VV 170
            +  ++   +    + I     +GG+I     VDV+ +    E + +            +
Sbjct: 114 YIEYVIAPNRVPFPLPIDSPDIIGGVIGNGSFVDVLALTKSDENRNSNRATKKTLSITPI 173

Query: 171 LSNIRVIAIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
            ++I+V+ +   +  + R+          LELT  QA  L+ A+  AK+  V +SI + +
Sbjct: 174 FTSIKVLQVKRTVIPETRIEPAKEGIVLILELTRSQAVELIVAKEAAKIE-VHKSIGNYS 232

Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
               + ++  DV ++ + +   +A  +  K
Sbjct: 233 IEDLK-ANAGDVLDDFRAVTEYRANKVTIK 261


>gi|264680619|ref|YP_003280529.1| signal peptide protein, CpaB like protein [Comamonas testosteroni
           CNB-2]
 gi|262211135|gb|ACY35233.1| putative signal peptide protein, CpaB like protein [Comamonas
           testosteroni CNB-2]
          Length = 329

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 27/244 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K+   + + V+    +   ++A    +P            P   ++V+++   +  G V+
Sbjct: 6   KIAVGVLLAVALALGIYGWMLAKAPQTPDPQAQTSASDSKPNANVSVVMASQPIPAGQVL 65

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               L+ +  P   + DG   ++      Q   G +  V I KG P+   ++V     GL
Sbjct: 66  KAEDLQVLQLPA--IPDGAYSEI------QAAVGSVPAVDIPKGAPVLQGQMV----TGL 113

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSNIRVIA 178
           +  + +G+RA  + +  +  VG  I+P D VDV            +    ++LS  RV+A
Sbjct: 114 ALKVSEGERAVAVKVDENIGVGNRIRPGDFVDVFFALRRDGNEIDQSQARLLLSRKRVLA 173

Query: 179 ID------------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
                                      TA L +   +   L+   S   L L LR+  D+
Sbjct: 174 YGAASVDALSSAEKTEGKQANGPDNARTAVLAVPVAEVSQLLLGGSNGSLLLALRNPTDM 233

Query: 227 NPSS 230
               
Sbjct: 234 TEPD 237


>gi|302387183|ref|YP_003823005.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1]
 gi|302197811|gb|ADL05382.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1]
          Length = 283

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V GV  +V  ++    ++P   +          +   ++    ++ VG V+T + ++ V 
Sbjct: 9   VVGVLCIVLSLLICFGLTPLFNKGIS-------QKTEIVRVTKEIKVGEVITQDKVKTVE 61

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128
               N+ +  I         +   G      +  GD I   K+    +   + L  L   
Sbjct: 62  VGGYNLPENVIRT------KENAVGTYALADLSIGDYILNTKVSKTPSAENAYLYHLDGS 115

Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179
           K+A ++ I   S+ + G ++  D V V+      +    +   L  + VI++        
Sbjct: 116 KQAISITIKSFSNGLSGKLQSGDIVSVIAPDYKKQGATVIPPELKYVEVISVTASNGYDA 175

Query: 180 --DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
                  S +   + ST TL +TP Q   L + +S  K  L L    + +  
Sbjct: 176 NTGEQETSKDEKELPSTVTLLVTPEQGNLLASLESDGKTHLSLVYRGEESNV 227


>gi|152980658|ref|YP_001355007.1| CpaB pilus assembly protein [Janthinobacterium sp. Marseille]
 gi|151280735|gb|ABR89145.1| CpaB pilus assembly protein [Janthinobacterium sp. Marseille]
          Length = 317

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 82/249 (32%), Gaps = 29/249 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN--VLISKGDLAVG 58
           M     +  V+  + A+    +A  +         EV T N  K     V+ +   L  G
Sbjct: 1   MNKLTKIIAVILVLLAVTLAALAWWMGHRPPPPPVEVKTANMPKTAEYAVVAAAKKLEKG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +T + ++ V  P        +          ++ G +  V I     +  E+LV    
Sbjct: 61  KQITADSVKLVTLP--------MTANGTYANAGDVIGKIPAVEIAADTLVTEEQLVK--- 109

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIRV 176
            GL+  L +G+RA  + +     VG  I   D+VDV                ++ S  RV
Sbjct: 110 -GLALKLAEGERAVAISVDEVVGVGNRIAAGDYVDVFFTLKKGNDVDIGQSRLLASRRRV 168

Query: 177 IAIDHNI-------------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
           +                   +   +     TA L     Q   L+ A    +L+LVLR  
Sbjct: 169 LTYGGATMGEAQASPNALANNQTAQQSQARTAVLATPIDQVNQLLLASQNGRLTLVLRHP 228

Query: 224 ADLNPSSSE 232
            D   +   
Sbjct: 229 DDTGVADMS 237


>gi|117619605|ref|YP_855990.1| Flp pilus assembly protein CpaB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561012|gb|ABK37960.1| Flp pilus assembly protein CpaB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 296

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 22/244 (9%)

Query: 28  SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87
           +      +       A+   VL++   +  G  + P  L W   P     +     +   
Sbjct: 30  TAVPPGEQAPEPAASARLAQVLVAAHRVQAGAFIHPEDLVWQTLPAAEEMNLPGLFLFGF 89

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMI 146
              + L G LV   +  G  +  + LV       LS+++  G RA T+ +   +A  G+I
Sbjct: 90  TDTKALKGSLVTRTLEAGQIVSADDLVRPEQSHYLSAMMAPGMRAVTLALGREAASHGLI 149

Query: 147 KPNDHVDVVMVRSLSERK----------PTVTVVLSNIRVIAIDHNIDS---------DE 187
           +P + VDV++    + ++           +  ++L++I+++AID  +            +
Sbjct: 150 RPGNRVDVILTSKHTHQRNAQGAEVTSKQSAEIILTDIKLLAIDAQVTDIAALNGTVAAQ 209

Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
                   T EL P  A  L+ A  + +L+LVLRS       +  ++            Q
Sbjct: 210 DNFDQVAVTFELAPSAAARLLLAHRLGELALVLRSA--QAAPTGSEAVTLPAGSLIWAEQ 267

Query: 248 IIKA 251
           + + 
Sbjct: 268 VARG 271


>gi|302185188|ref|ZP_07261861.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. syringae
           642]
          Length = 319

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 88/282 (31%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45
           M     + + V  +  AL+AG + + +  P    T  +    P                 
Sbjct: 1   MSSRITLVLAVLFLLGALIAGYLGIAVSKPAEAPTVVIPPSEPVTTETAIQTPPTPPVED 60

Query: 46  ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T + L       +    G         A+ ++ G      +
Sbjct: 61  ALRHNVVVLARDIPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +          G L+ ++   +RA  + +   +   G + P D+VDV++      
Sbjct: 113 TAGSWLTESNF--EAGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDA 170

Query: 163 RKP--TVTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPM 202
             P  +  VV+  +R++ +   +  D                         T T+ +   
Sbjct: 171 SNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRIHARTVTVAVPQT 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N  +   ++        +
Sbjct: 231 LVARLMLASQTGVLRLAVRSADEGNLQNYWANETGSPDAAER 272


>gi|238027563|ref|YP_002911794.1| Flp pilus assembly CpaB [Burkholderia glumae BGR1]
 gi|237876757|gb|ACR29090.1| Flp pilus assembly CpaB [Burkholderia glumae BGR1]
          Length = 308

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 95/251 (37%), Gaps = 30/251 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
            LT+++ + +  +  L+     M    P  V   +      AK + V+++   L  G+ +
Sbjct: 4   NLTKVLAVALIAIAVLLGAYAWMLGSRPSSVPRVQGSQPAQAKLVPVVVAVQPLKAGLPI 63

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L           DG   D        ++ G +    I +   +    L    + G+
Sbjct: 64  AASSLRVQQ--AAARPDGAFVDPV------QIIGRVPSADIPEQAAVVESSL----SSGM 111

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--------------PTV 167
           + L+  G+RA  + +  ++AVG  ++P + VDV +                         
Sbjct: 112 ADLVKPGERAVAIKVDENNAVGNHMRPGNFVDVFVNLKRDAAGGLPGTNSSGPEIPKTQA 171

Query: 168 TVVLSNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSI 223
            ++LS IRV+A      + +          TA L +   Q  AL  A++   L+L LRS 
Sbjct: 172 KLLLSKIRVLAFGDATTARDPSGGAAGGVRTAVLAVPTAQIDALTLAEASGNLTLALRSP 231

Query: 224 ADLNPSSSEDS 234
            D + ++   +
Sbjct: 232 RDEDVATQTVA 242


>gi|299069499|emb|CBJ40768.1| putative Flp pilus assembly protein precursor (CpaB) [Ralstonia
           solanacearum CMR15]
          Length = 310

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 92/252 (36%), Gaps = 28/252 (11%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M    L       +  A++ G++A +              EN      V+++   L  G 
Sbjct: 1   MTSKYLQIFAAGLLLLAVILGVVAWKNAHRPPAPVAAQQNENGKTLYPVVVTVKPLEAGK 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +T + +   + P        I+     + + ++ G    VPI  G P+   +L    + 
Sbjct: 61  PITADQVGVESLP--------INPADGFSEVNKVVGREPIVPIGIGVPLIGSQL----SS 108

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176
           GL+  +  G+RA  + +     VG  + P D+VDV +V     ++       ++L ++RV
Sbjct: 109 GLALQVEPGQRAVAITVDEVVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRV 168

Query: 177 IAIDHNIDSDERVL------------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           +A      ++                   TA L +       L  +Q   +L + LR+ +
Sbjct: 169 LAFGPLAVNEGPQKQGDAGAVARRVDQAKTAVLAVPVESVSQLAISQQSGRLLMALRNPS 228

Query: 225 DLNPSSSEDSDV 236
           D    +    D 
Sbjct: 229 DEAEPTVRPQDA 240


>gi|269105131|ref|ZP_06157825.1| flp pilus assembly protein RcpC/CpaB [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268160581|gb|EEZ39080.1| flp pilus assembly protein RcpC/CpaB [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 267

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 106/275 (38%), Gaps = 26/275 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++   +  +   + G +A  L +P      E I E     I V     D+  G  
Sbjct: 1   MKSKLILAFAIIVILFGLYG-LATNLSNPTSPANHEPIKEE--PKIRVWKLNKDVHPGEF 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           +  N+L     PE         D    +   +    + +  +  G  + ++ LV    +G
Sbjct: 58  IERNMLSVENIPESEANGLGFVDDVNLDWKAK---TVFKSHLSAGSLLTIDDLVQPDQDG 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-------------RKPT 166
            +  ++ + K    + ++ SS +GG+I     VD++ +  L+                 +
Sbjct: 115 YIDFIIDENKIPFPIIVTPSSVIGGVIANGSLVDILALTGLNGTASNFGNNSGSSKNTVS 174

Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGS----TATLELTPMQAKALVAAQSVAKLSLVLRS 222
           +T ++S ++V+ + H +    R    S    T  +ELT  QA  L  AQ ++++  V +S
Sbjct: 175 ITPIISAVKVLLVKHQLIDTNRQSDTSDEQVTLVVELTRKQAVVLTVAQRISEIE-VHKS 233

Query: 223 IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
               N      +D  D+ +  K I   +A     K
Sbjct: 234 SGYYNTDDLS-ADAGDILKNFKAITEYRADTTTVK 267


>gi|227811503|ref|YP_002811514.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. CDC 684]
 gi|254687774|ref|ZP_05151630.1| Flp pilus assembly protein CpaB [Bacillus anthracis str.
           CNEVA-9066]
 gi|254739264|ref|ZP_05196966.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Western
           North America USA6153]
 gi|254745060|ref|ZP_05202737.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Kruger B]
 gi|254756463|ref|ZP_05208492.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Vollum]
 gi|227008105|gb|ACP17847.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. CDC 684]
          Length = 286

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++        V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +         +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + +   ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDSETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|320322729|gb|EFW78822.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330486|gb|EFW86465.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330873796|gb|EGH07945.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 319

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 82/282 (29%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45
           M     M + V  +  AL+AG + + +  P            P                 
Sbjct: 1   MSSRITMVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVED 60

Query: 46  ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G          + +L G      +
Sbjct: 61  ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSTWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +          G L+ ++   +RA  + +       G + P D+VDV++      
Sbjct: 113 TAGTWLSENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170

Query: 163 RKP--TVTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPM 202
                +  VV+  +RV+ +   +  D                         T T+ +   
Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N  +   S+        +
Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272


>gi|300694112|ref|YP_003750085.1| flp pilus assembly protein precursor (cpab) [Ralstonia solanacearum
           PSI07]
 gi|299076149|emb|CBJ35462.1| putative Flp pilus assembly protein precursor (CpaB) [Ralstonia
           solanacearum PSI07]
          Length = 310

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 27/243 (11%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76
           ++ G +A +              EN      V+++   L  G  +T + +   + P    
Sbjct: 18  VILGAVAWKNAHRPPAPVAAQQNENGKTLYPVVVTVKPLEAGKPITADQVGVESLPIN-- 75

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136
                 DV +      + G    VPI  G P+   +L    + GL+  +  G+RA  + +
Sbjct: 76  PADAFADVSK------VVGREPIVPIGVGVPLIGSQL----SSGLALQVVPGQRAVAITV 125

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDERVL--- 190
                VG  + P D+VDV +V     ++       ++L ++RV+A      ++       
Sbjct: 126 DEVVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRVLAFGPLAVNEGPQKQPD 185

Query: 191 ---------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
                       TA LE+       L  A    +L L LR+ +D    +    D   +  
Sbjct: 186 ANALTRRVDQAKTAVLEVPVESVNQLAIAHQSGRLLLALRNPSDDAEPTVRPQDAQALAV 245

Query: 242 EGK 244
             +
Sbjct: 246 ANR 248


>gi|319940439|ref|ZP_08014784.1| hypothetical protein HMPREF9464_00003 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806065|gb|EFW02814.1| hypothetical protein HMPREF9464_00003 [Sutterella wadsworthensis
           3_1_45B]
          Length = 321

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 111/283 (39%), Gaps = 42/283 (14%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINV-----LISKGDLA 56
           K + L+ +  + V A  A  +A  L++PH  +      +  A    V       +   + 
Sbjct: 4   KTSSLLLLGFAVVLAGCAAFVARGLLAPHAAERPAAAAQAKASEAQVPPVWAAAAAKPVE 63

Query: 57  VGMVVTPNILEWVAFPEENVFDGFID--DVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114
            G  ++   ++WV    +      I         A   L G  VR  + +G+ I  + ++
Sbjct: 64  PGEFLSGTAIKWVEMKADEAPASAISAKRPGDRTAAALLMGATVRRSVPQGELITQDDVL 123

Query: 115 DR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------- 166
                G L+++L  GKRA ++  S  S+  G++   D VDV++       +         
Sbjct: 124 YPGNPGFLAAVLSPGKRAVSIPTSAVSSNSGLVSAGDWVDVILTLKRETAEAMADQQDKT 183

Query: 167 -------VTVVLSNIRVIAIDHNIDS--------------------DERVLVGSTATLEL 199
                     +L+N+RV+A++++ +S                      R +   T TLE+
Sbjct: 184 SGMTKLAAQTILTNVRVLALNNSTESIAPQPETAPQKTDAKKTASTAARRVDYRTITLEV 243

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
           TPM+A+AL  A+    L + +R + +     +  +   + +  
Sbjct: 244 TPMEAQALAVAKEAGDLQVSIRGLREPETKDAAGTSAVNEKTA 286


>gi|289625313|ref|ZP_06458267.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647838|ref|ZP_06479181.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867147|gb|EGH01856.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330871035|gb|EGH05744.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 319

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 82/282 (29%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45
           M     M + V  +  AL+AG + + +  P            P                 
Sbjct: 1   MSSRITMVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVED 60

Query: 46  ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G          + +L G      +
Sbjct: 61  ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSSWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +          G L+ ++   +RA  + +       G + P D+VDV++      
Sbjct: 113 TAGTWLSENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170

Query: 163 RKP--TVTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPM 202
                +  VV+  +RV+ +   +  D                         T T+ +   
Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N  +   S+        +
Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272


>gi|225871553|ref|YP_002752911.1| Flp pilus assembly protein CpaB [Bacillus cereus 03BB102]
 gi|225785587|gb|ACO25805.1| Flp pilus assembly protein CpaB [Bacillus cereus 03BB102]
          Length = 286

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 88/242 (36%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++      + V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIVAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +       + +++ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----VSKKDVVGTWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|228918954|ref|ZP_04082339.1| hypothetical protein bthur0012_60570 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228840756|gb|EEM86013.1| hypothetical protein bthur0012_60570 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 286

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 88/242 (36%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++      + V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIVAVGLAAATVAGIYGYNHF----------AVENAVKPTKIIVAAKDIPS 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +       + +++ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----VSKKDVVGKWTNDGQPISENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|66047617|ref|YP_237458.1| Flp pilus assembly CpaB [Pseudomonas syringae pv. syringae B728a]
 gi|63258324|gb|AAY39420.1| Flp pilus assembly CpaB [Pseudomonas syringae pv. syringae B728a]
 gi|330969408|gb|EGH69474.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 319

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 90/282 (31%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45
           M     + + V  +  AL+A  + + +  P       +    P                 
Sbjct: 1   MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAAVIPPSEPVTTETAIQTPPTPPVED 60

Query: 46  ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T + L       +    G         A+ ++ G      +
Sbjct: 61  ALRHNVVVLARDIPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +          G L+ ++   +RA  + +   +   G + P D+VDV++      
Sbjct: 113 TAGSWLTESSF--DTGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 170

Query: 163 RKP--TVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202
             P  +  VV+  +R++ +                  D  +  +++ +   T T+ +   
Sbjct: 171 SNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPQA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N      ++   +    +
Sbjct: 231 LVARLMLASQTGVLRLAVRSADEGNLQDYWANEAGGLDAAER 272


>gi|295690799|ref|YP_003594492.1| Flp pilus assembly protein Cpab [Caulobacter segnis ATCC 21756]
 gi|295432702|gb|ADG11874.1| Flp pilus assembly protein CpaB [Caulobacter segnis ATCC 21756]
          Length = 293

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 132/291 (45%), Gaps = 40/291 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGII---AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           M   RL+ ++++ V A+   ++   A+ + +   V               VL++K DLA+
Sbjct: 1   MSPVRLLIVLIAAVSAIGMAVVLQRALGVKADKPVAAAAPAAAPAKPMTQVLVAKRDLAI 60

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQP------------------------NAMQEL 93
           G  +T   ++W A+P ++V   FI +   P                        +  + L
Sbjct: 61  GARLTQADIDWQAWPSDSVNAAFITNGAAPAEGETTSGAVALAKAAVTGQMIGGDPAKAL 120

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           DG +VR PIL G+PI   K+V  G GG LS +L  GKRA  + +S  +  GG I P D V
Sbjct: 121 DGAIVRDPILAGEPITARKIVRGGEGGYLSVVLTPGKRAVAVPVSADTTAGGFILPGDRV 180

Query: 153 DVVMVRSLS------ERKPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTPMQA 204
           DV+  R          R      VL N+RV+A+D     D D +  + ++ATLE+   +A
Sbjct: 181 DVLSTRDAPLPGGVGGRVIIGETVLRNVRVLALDQKTVADKDAKSQIATSATLEVGAAEA 240

Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIV 255
           +AL AA++   ++L LR+  D    S   +   D       ++I + G   
Sbjct: 241 EALAAAKAGGPVTLALRAYTDAGAPSGGFAGPSDPA----AVRINRGGQTS 287


>gi|228912543|ref|ZP_04076208.1| hypothetical protein bthur0013_66020 [Bacillus thuringiensis IBL
           200]
 gi|228847113|gb|EEM92102.1| hypothetical protein bthur0013_66020 [Bacillus thuringiensis IBL
           200]
          Length = 286

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 86/242 (35%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++        V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +   +L     P + +    +         +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEEMLVERTLPGDAIPPNALR-----VNKKEVVGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           + +   SS+  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEDLPDSSILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|171317112|ref|ZP_02906315.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MEX-5]
 gi|171097746|gb|EDT42573.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MEX-5]
          Length = 308

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 90/264 (34%), Gaps = 32/264 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
                +   +    A++ G+ A  ++         V T   A  + V+++   L  G  +
Sbjct: 3   NNLTKIIAGLLIAIAVLLGLYAW-MLGRSSPGPAPVSTTFAANPVPVVVATRALPAGQPI 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L+    P      G   D         L G +    I    PI    LV     GL
Sbjct: 62  AADALKLQ--PIAPAPTGAFGDPAM------LVGRVPAKEIAASSPIVAGALV----SGL 109

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---------PTVTVVLS 172
           +  +  G+RA  + +  ++AVG  ++P + VDV +                     ++LS
Sbjct: 110 AEDVQPGERAIAVRVDETNAVGNRLRPGNFVDVFLNLKREGGGTMIDGEVSQTQARLLLS 169

Query: 173 NIRVIAIDHNIDSDE----------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
            +RV++        +          +      A L +   Q  AL   ++  +L+  LR+
Sbjct: 170 KVRVLSFGDATPDRDSGSNSNSNNGQPSNARIAVLAVPTAQVDALTLGEASGRLTFALRN 229

Query: 223 IADLNPSSSEDSDVWDVQEEGKEI 246
             D   ++   +   D +     +
Sbjct: 230 PRDDELATQTVAMRTDNKLSPSAL 253


>gi|312621079|ref|YP_003993807.1| flp pilus assembly protein rcpc/cpab [Photobacterium damselae
           subsp. damselae]
 gi|311872800|emb|CBX86891.1| Flp pilus assembly protein RcpC/CpaB [Photobacterium damselae
           subsp. damselae]
          Length = 267

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 104/275 (37%), Gaps = 26/275 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++   +  +   + G +A  L +P      E I       I V     D+  G  
Sbjct: 1   MKSKLILAFAIIVILFGLYG-LATNLSNPTSPANHEPI--KEEPKIRVWKLNKDVHPGEF 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           +  N+L     PE         D    +   +    + +  +  G  + ++ LV    +G
Sbjct: 58  IERNMLSVENIPESEANGLGFVDDVNLDWKAK---TVFKSHLSAGSLLTIDDLVQPDQDG 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-------------VRSLSERKPT 166
            +  ++ + K    + ++ SS +GG+I     VD++                  S+   +
Sbjct: 115 YIDFIIDENKIPFPIIVTPSSVIGGVIANGSLVDILALTGLTGTASNFGNNSGSSKNTVS 174

Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGS----TATLELTPMQAKALVAAQSVAKLSLVLRS 222
           +T ++S ++V+ + H +    R    S    T  +ELT  QA  L  AQ ++++  V +S
Sbjct: 175 ITPIISAVKVLLVKHQLIDTNRQSDTSDEQVTLVVELTRKQAVVLTVAQRISEIE-VHKS 233

Query: 223 IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
               N      +D  D+ +  K I   +A     K
Sbjct: 234 SGYYNTDDLS-ADAGDILKNFKAITEYRADTTTVK 267


>gi|197337610|ref|YP_002157811.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11]
 gi|197314862|gb|ACH64311.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11]
          Length = 261

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 101/270 (37%), Gaps = 22/270 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++ + +  +   + G+     +       + +I       I V   K D+     
Sbjct: 1   MKAKIIVVLAMITILFGLYGLAGSLSM----FAPQNIIKPKEENKIKVWQLKEDVNARDE 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119
           +   ++  V  PE         +      +    G + R  + KG  I +E  +    + 
Sbjct: 57  INRRLVSLVLLPESEANKLSFSED---VPINWNRGTIYRHDLKKGAYISMEDFITPEEDN 113

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---------VV 170
            +  ++   +    + I     +GG+I     VDV+ +    E + +            +
Sbjct: 114 YIEYVIAPNRVPFPLPIDSPDIIGGVIGNGSFVDVLALTKSDETRNSNRATKKTLSITPI 173

Query: 171 LSNIRVIAIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
            ++++V+ +   +  + R+          LELT  QA  L+ A+  AK+  V +SI + +
Sbjct: 174 FTSVKVLQVKRTVIPETRIEPAKEGIVLILELTRSQAVELIVAKEAAKIE-VHKSIGNYS 232

Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
               + ++  DV ++ + +   +A  +  K
Sbjct: 233 IEDLK-ANAGDVLDDFRAVTEYRANKVTIK 261


>gi|261820213|ref|YP_003258319.1| Flp pilus assembly protein CpaB [Pectobacterium wasabiae WPP163]
 gi|261604226|gb|ACX86712.1| Flp pilus assembly protein CpaB [Pectobacterium wasabiae WPP163]
          Length = 312

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 44/272 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+     +  + V A +  ++    +S        V+ + P K   VL++  DL  G  
Sbjct: 1   MKVNSTYVLSGALVLAGIVALVVRSHLSSAPPPPPPVVVQAPEKT-AVLVAAKDLHPGDF 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +    L W     E       + V   ++   L G  +R  + +G  +    LV +   G
Sbjct: 60  IDSASLRWQV--TEEPVSRTFNFVRGKDSQSLLFGATLRETVTEGSALTNNVLVRQNEPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------- 166
            L+++L KGKRA ++  S  ++  G++   D VDV++     ++                
Sbjct: 118 FLAAVLGKGKRAISVPTSAVASNAGLVAAGDRVDVILSMKRDDQPELPASRNQPVVMPLL 177

Query: 167 -VTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199
               ++ ++RV+A++    +                            R     T TLE+
Sbjct: 178 ASQTIVRDLRVLALNDRTGTPVYPRLDAMEDGATLDAAAKSRESAVRSRPATYQTVTLEV 237

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
           TP QA+AL  A+ +  L L LRS    +    
Sbjct: 238 TPQQAEALAVAKELGILHLALRSATPDDGIDP 269


>gi|266619843|ref|ZP_06112778.1| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479]
 gi|288868552|gb|EFD00851.1| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479]
          Length = 283

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 26/242 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   L   ++ G+  +V  ++    ++P      +         + ++    ++  G  
Sbjct: 1   MK-KFLKNRIILGLICIVVSLLICFGITPMFNDALK-------SKVTLVRVTKEIRTGEQ 52

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T  ++  V     N+    I  +      +E+ G      + KGD I   KL D     
Sbjct: 53  ITDKMVTSVEAVGYNLPSNVIYKI------EEVVGKYANADLYKGDYILKSKLSDTPMLR 106

Query: 121 LSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
            + L  L    RA ++ I   +S + G ++  D V ++     S+R+  V   L  + +I
Sbjct: 107 NAYLNKLNGENRAISVSIKSFASGLSGKLEAGDIVSLIAADVGSQRETLVYPELQYVEII 166

Query: 178 AID---------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           A               + E   + ST T+  +P Q++ L   +   KL   L    +   
Sbjct: 167 ATTGSSGSDQNVQERGNGEEEELASTITVLASPEQSRLLAELEQTGKLHAALVFRGESTQ 226

Query: 229 SS 230
           + 
Sbjct: 227 AQ 228


>gi|284802136|ref|YP_003414001.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5578]
 gi|284995278|ref|YP_003417046.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5923]
 gi|284057698|gb|ADB68639.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5578]
 gi|284060745|gb|ADB71684.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5923]
          Length = 284

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 85/225 (37%), Gaps = 18/225 (8%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G+I + L          +  +  ++   ++    D+ +G  +T ++++ V     N+ 
Sbjct: 9   VIGVICIVLSLIICFAVTPLFNKGMSQKTEIVRVTKDIKIGDEITKDMVQIVEVGSYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           +  + +       + + G      ++ GD I   K+        + L  L   K+A ++ 
Sbjct: 69  EDVVKN------TETVLGKFASADMVPGDYIISSKIAAEPAAENAYLYNLTGEKQAMSVS 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-------- 186
           +   ++ + G +   D V ++      +    +   L  + VIA+      D        
Sbjct: 123 VKSFATGLSGKLVSGDIVSIIAPDYKKQGTTVIPPELQYVEVIAVTAGSGYDANTGEQED 182

Query: 187 -ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
            E   + ST TL +TP Q+K L   ++   L + L        ++
Sbjct: 183 SEEKELPSTVTLLVTPEQSKILAMLEADGNLHISLVYRGSKENAA 227


>gi|187478777|ref|YP_786801.1| pilus assembly protein [Bordetella avium 197N]
 gi|115423363|emb|CAJ49897.1| putative pilus assembly protein [Bordetella avium 197N]
          Length = 270

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 88/232 (37%), Gaps = 19/232 (8%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
             +  ++   N    +  L++  DL  G ++T + +     P+             P   
Sbjct: 46  QAKERDLQHRNQVVMVTRLVAWADLEAGQLLTEDDIASREIPKNWAP----HQSLSPEQT 101

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
             L G  ++VP++ G PI    +     G  ++ L  GKRA T+ +   + +   ++  D
Sbjct: 102 GLLIGSRLKVPVMAGQPILQADIEFVSPGT-AARLGVGKRALTLPVRELADMPPDMREGD 160

Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210
            +D+ +  +  +++     +L N +V+A              +   LE        ++AA
Sbjct: 161 RLDIYVSLTHHDKR-LTLPLLQNGKVLA--------APGPESAQVVLEADAQDVTRVIAA 211

Query: 211 QSVAKLSLVLRSIADL-----NPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
           +    L+L LRS  D      +      +D+  + EEG     +  G   N 
Sbjct: 212 RQAGSLTLALRSPEDAAYPAHDEPGGALADILGLAEEGDAGVPVLYGDESND 263


>gi|329943872|ref|ZP_08292143.1| Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328531578|gb|EGF58414.1| Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 362

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 86/257 (33%), Gaps = 32/257 (12%)

Query: 1   MKLTR---LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           M   +   ++ I  + V ALV   + +  V+         +         V+    D+  
Sbjct: 114 MNPRQRKGIILIFFTIVGALVTFGLVLSYVNS--------VASQVGPMTTVVTLTRDVES 165

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
              +T   +E    P+    +G +       + +E  G++      KGD ++   L    
Sbjct: 166 LTSLTEADVEVKEVPKRWAPNGALH------SFKETSGLVTAGTYHKGDMLQSGMLESPP 219

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRV 176
                  L  G R   + +   + V G I   + VD++      + +     VV+ N  +
Sbjct: 220 G------LQSGYREVAIIVDAETGVAGKISSGETVDIIATVEDPNTKAQQANVVVENAVI 273

Query: 177 IAIDHNIDSDERVLVGS-------TATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNP 228
           + +    D  E+   G+         T  L+   A  +  A+S A K+ L LR   D + 
Sbjct: 274 LDVGVTTDIKEKDESGNFTDEKGVPVTFALSTQDALKVAYAESFAVKVRLALRGEGDDSA 333

Query: 229 SSSEDSDVWDVQEEGKE 245
              + +           
Sbjct: 334 LGPDSTQYGGGSAPAPA 350


>gi|240145308|ref|ZP_04743909.1| putative Flp pilus assembly protein CpaB [Roseburia intestinalis
           L1-82]
 gi|257202665|gb|EEV00950.1| putative Flp pilus assembly protein CpaB [Roseburia intestinalis
           L1-82]
          Length = 231

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 16/223 (7%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G++ + +          ++    ++   ++    D+  G  +   +L+ V     N+ 
Sbjct: 9   VLGVLCIAVSLLICFAVTPLVNAGLSQKTTIVRFVKDVKAGEEIKKGMLQEVEVGGYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           +  +       ++ E +G  +   +  GD I  EK+ D        L  L   K+A ++ 
Sbjct: 69  ENVLR------SITEAEGKYLTADVYAGDYIVAEKVADEPAAENKYLYNLNGEKQAISIT 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------DHNIDSDE 187
           IS  +  + G +K  D V V+    L   +  +   L  + VIA+        +  + +E
Sbjct: 123 ISSFAEGLSGKLKSGDIVSVIAPDYLGSGETVIPAELKYVEVIAVTAKSGYDANTQEQEE 182

Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
              + ST T+ + P Q++ L   ++  ++ L L    D   ++
Sbjct: 183 EKELPSTVTVLVRPEQSRLLARLEAEGEIHLSLVYRGDSQKAA 225


>gi|107022593|ref|YP_620920.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054]
 gi|116689542|ref|YP_835165.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424]
 gi|170732846|ref|YP_001764793.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3]
 gi|105892782|gb|ABF75947.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054]
 gi|116647631|gb|ABK08272.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424]
 gi|169816088|gb|ACA90671.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3]
          Length = 301

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 86/250 (34%), Gaps = 30/250 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
                +   +    A++ G+ A  ++         V      + + V+++   L  G  +
Sbjct: 3   NNLTKIIAGLLIAIAILLGVYAW-MLGRKPADVAPVAATVATQSVPVVVTTRPLQAGQPI 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               L+           G   D        +L G +    I     +    L    + GL
Sbjct: 62  PAEALKVQQ--STAAPQGAFADPL------QLVGRIPAADIPAQAAVVASAL----SSGL 109

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------------PTVT 168
           +  L  G+RA  + +  ++AVG  ++P ++VDV +                         
Sbjct: 110 AEQLAPGERAVAIKVDETNAVGNRVRPGNYVDVFLNLKRDGTGVAIGGTSTAEIVNTQAR 169

Query: 169 VVLSNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           +++S +RV++        +          TA L +   Q  AL  A+   +L L LRS  
Sbjct: 170 LLMSKVRVLSFGDATTERDSSNGSVVGTRTAVLAVPTAQVDALTLAEQSGRLVLALRSPR 229

Query: 225 DLNPSSSEDS 234
           D + ++   +
Sbjct: 230 DEDVATQTVA 239


>gi|228925187|ref|ZP_04088297.1| hypothetical protein bthur0011_60590 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228834526|gb|EEM80055.1| hypothetical protein bthur0011_60590 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 286

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++        V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +         +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|206559893|ref|YP_002230657.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|198035934|emb|CAR51826.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 301

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 86/250 (34%), Gaps = 30/250 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
                +   +    A++ G+ A  ++         V      + + V+++   L  G  +
Sbjct: 3   NNLTKIIAGLLIAIAILLGVYAW-MLGRKPGDVAPVAATVATQSVPVVVTTRPLQAGQPI 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L+           G   D        +L G      I     +    L    + GL
Sbjct: 62  PADALKVQQ--STAAPQGAFADPL------QLVGRTPAADIPAQAAVVASAL----SSGL 109

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------------PTVT 168
           +  +  G+RA  + +  ++AVG  ++P ++VDV +                         
Sbjct: 110 AEQIAPGERAVAIKVDETNAVGNRVRPGNYVDVFLNLKRDGTGVAIGGTSTAEIVNTQAR 169

Query: 169 VVLSNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           +++S +RV++        +          TA L +   Q  AL  A+   +L L LR+  
Sbjct: 170 LLMSKVRVLSFGDATTERDSSNGSVVGTRTAVLAVPTAQVDALTLAEQSGRLVLALRNPR 229

Query: 225 DLNPSSSEDS 234
           D + ++   +
Sbjct: 230 DDDVATQTVA 239


>gi|47568973|ref|ZP_00239664.1| conserved hypothetical protein protein [Bacillus cereus G9241]
 gi|301068118|ref|YP_003786889.1| hypothetical protein BACI_pCIXO100760 [Bacillus anthracis CI]
 gi|47554357|gb|EAL12717.1| conserved hypothetical protein protein [Bacillus cereus G9241]
 gi|300379208|gb|ADK08111.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 286

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++        V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +         +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|313902402|ref|ZP_07835805.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM
           13965]
 gi|313467333|gb|EFR62844.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM
           13965]
          Length = 236

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 104/244 (42%), Gaps = 18/244 (7%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   +  +++  +  L   I+    V                  + V+++   +     +
Sbjct: 3   RGRMVRYLLLPVLAGLAVTILVAFYVR------VPAGEAGKEPRVPVVVATRPVPAQTPL 56

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120
             ++L     P + V  G +  +      +E  G + +VP+ +G+ +   KL       G
Sbjct: 57  QADMLAVRQVPADVVGRGAVGRI------EEAVGKVTKVPLAEGEFVLTSKLARGDGSDG 110

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSNIRVI 177
           L+  LP+G RA T+      AVGG ++P D VDV++     +    +P   +++ N+ V+
Sbjct: 111 LAYRLPEGTRALTIAADPVLAVGGFVQPGDRVDVLIGLPGGKPGVEQPEARILVENVLVL 170

Query: 178 AIDHNIDSDERVLVG--STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           A+  +  ++        +  TL + P  A A+V A+   +L L+LR   D  P+ +  + 
Sbjct: 171 AVQQDTAAEGEPAGDGLTHLTLAVAPAHAAAIVLAEQEGRLRLLLRPAGDGRPAGAVTAR 230

Query: 236 VWDV 239
           + D+
Sbjct: 231 LADL 234


>gi|228950016|ref|ZP_04112204.1| hypothetical protein bthur0007_60880 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809663|gb|EEM56096.1| hypothetical protein bthur0007_60880 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 286

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++        V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKSSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +       + +++ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----VSKRDVVGKWTNDGHPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVIFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|298488960|ref|ZP_07006983.1| Flp pilus assembly protein RcpC/CpaB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156458|gb|EFH97555.1| Flp pilus assembly protein RcpC/CpaB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 319

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 81/282 (28%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45
           M       + V  +  AL+AG + + +  P            P                 
Sbjct: 1   MSSRITTVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVED 60

Query: 46  ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G          + +L G      +
Sbjct: 61  ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSTWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +          G L+ ++   +RA  + +       G + P D+VDV++      
Sbjct: 113 TAGTWLSENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170

Query: 163 RKP--TVTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPM 202
                +  VV+  +RV+ +   +  D                         T T+ +   
Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N  +   S+        +
Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWPSEAGSRDAAER 272


>gi|167747677|ref|ZP_02419804.1| hypothetical protein ANACAC_02398 [Anaerostipes caccae DSM 14662]
 gi|239625012|ref|ZP_04668043.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|167653039|gb|EDR97168.1| hypothetical protein ANACAC_02398 [Anaerostipes caccae DSM 14662]
 gi|239521398|gb|EEQ61264.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 263

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 83/215 (38%), Gaps = 17/215 (7%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G+I + +          +  +  +K + ++    D+ +G  +T +++  V     N+ 
Sbjct: 9   VLGVICIVVSLLICFGVTPLFNKEVSKKVEIVRVVKDIKIGDKITGDMVRTVEVGSLNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
              + +       + + G      +  GD I   K+ D      + L  L   K+A ++ 
Sbjct: 69  SEVMKN------KENVIGKYASADMAPGDYIINSKVADEPAAENAYLYNLSGEKQAISVS 122

Query: 136 I-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-------- 186
           + S ++ + G +K  D V V+      + +  +   L  + VIA+      D        
Sbjct: 123 VKSFATGLSGKLKSGDIVSVIAPDYQKQGETVIPPELKYVEVIAVTAGSGYDANTGEEDP 182

Query: 187 ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
           E   + ST TL  TP Q++ L   +    L + L 
Sbjct: 183 EEKELPSTVTLLATPEQSRILAMMEKDGNLHISLV 217


>gi|167562916|ref|ZP_02355832.1| Flp pilus assembly protein CpaB family [Burkholderia oklahomensis
           EO147]
          Length = 226

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 26/231 (11%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +   +    A++ GI A  L            T      + V+++   L  G  +  + L
Sbjct: 8   IIAGLLIGIAILLGIYAWLLGRKPAPAAPSAATAVATAVVPVVVATRALPTGQPIPADAL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P      G   +         + G +    I+   P+   +L+     GL+  + 
Sbjct: 68  KVQQMPASVA--GAFSNPAL------VTGRIPASDIVAQAPVLESELM----SGLADQIA 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVVLSNIRVI 177
            G+RA  + +  ++AVG  ++P + VDV M                +    ++LS +RV+
Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFMNMKRESSFGTTGSEISQSQARLLLSRVRVL 175

Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
           +        +           TA L +   Q  AL  A++  +L L LRS 
Sbjct: 176 SFGDATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSP 226


>gi|257483348|ref|ZP_05637389.1| CpaB family Flp pilus assembly protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 319

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 81/282 (28%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45
           M       + V  +  AL+AG + + +  P            P                 
Sbjct: 1   MSSRITTVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVED 60

Query: 46  ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G          + +L G      +
Sbjct: 61  ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSTWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +          G L+ ++   +RA  + +       G + P D+VDV++      
Sbjct: 113 TAGTWLSENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170

Query: 163 RKP--TVTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPM 202
                +  VV+  +RV+ +   +  D                         T T+ +   
Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N  +   S+        +
Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272


>gi|167769285|ref|ZP_02441338.1| hypothetical protein ANACOL_00608 [Anaerotruncus colihominis DSM
           17241]
 gi|167668253|gb|EDS12383.1| hypothetical protein ANACOL_00608 [Anaerotruncus colihominis DSM
           17241]
          Length = 281

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 84/226 (37%), Gaps = 19/226 (8%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G+I + L          +  ++ ++   ++     +  G  +T ++++ V     N+ 
Sbjct: 9   VVGVICILLSLLICFGLTPLFNQSVSQKAEIVRVVQPIRAGDEITESMVQIVEVGGYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           +  +         +   G      +  GD I   KL D      + L  L   ++A ++ 
Sbjct: 69  EDVLRQ------KESAVGKYATADLAVGDYIIPSKLSDAPAAENAYLYSLDGSQQAISVS 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184
           I   +  + G ++  D V V+      + +  V   L  + +I++             +D
Sbjct: 123 IKSFAEGLSGKLQSGDIVSVIAPDYKQQGQTVVPAELQYVEIISVTASSGYDANTGEPVD 182

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
            ++   +  T TL ++P QAK L   ++   + L L    D   + 
Sbjct: 183 EEDDKELPDTVTLLVSPEQAKVLAELEAEGTIHLALVYRGDRENAD 228


>gi|311105391|ref|YP_003978244.1| Flp pilus assembly protein CpaB 1 [Achromobacter xylosoxidans A8]
 gi|310760080|gb|ADP15529.1| Flp pilus assembly protein CpaB 1 [Achromobacter xylosoxidans A8]
          Length = 284

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 89/234 (38%), Gaps = 12/234 (5%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +L R     ++ +  LV+             + + +  E     ++ L++  DL  G  +
Sbjct: 11  RLRRTGVYAIALIAGLVSAWAVR---EHVQQRVQALEAEARTPMVSRLVAAYDLPAGTQL 67

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120
               L     PE       I     P  +  L G  +   +  G+P+    L        
Sbjct: 68  EELHLAVREIPEPWASRASI----DPLDLSGLLGATLLADVANGEPLLRGHLTFTAPVPA 123

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L+S L  G+RA T+  +    +  +++  D +D+ +  +  +++     +L  +RV+ + 
Sbjct: 124 LASRLRSGQRALTVAATDLGGLAEVLRVGDAIDIYVSFAHRQQE-LTVPLLQGMRVLMVG 182

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
              D + +   G   TL  TP +A   VAA+    L+ +LR   D    S    
Sbjct: 183 GEADGENK---GGNITLAATPDEAMRFVAARQSGVLTAMLRHRDDAAVVSGAAQ 233


>gi|209809169|ref|YP_002264707.1| putative Flp pilus assembly protein [Aliivibrio salmonicida
           LFI1238]
 gi|208010731|emb|CAQ81122.1| putative Flp pilus assembly protein [Aliivibrio salmonicida
           LFI1238]
          Length = 260

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 107/270 (39%), Gaps = 23/270 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK+  ++ + V  +   + G+          + T + I       I V   K ++ +   
Sbjct: 1   MKVKLIIVLAVMTILFGLYGLG-----ESLSLFTPQKIQSAKEVKIKVWRLKKEVNMSEE 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119
           +  ++L     PE+        +    +    + G + +  + KG  I +  L+    +G
Sbjct: 56  INRHMLALELMPEQKANALSFSEDVTLDL---IPGTVFKSELKKGTYISMSDLITPEEDG 112

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---------VV 170
            +  ++   +    + +  SS  GG+I+    VD++ + S      +            +
Sbjct: 113 YIDYVIAPERIPFPITVDPSSITGGVIRSGTIVDILALTSPQNINNSTRNVKKSVSITPI 172

Query: 171 LSNIRVIAIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
            + ++V+ + H++    R  V +      LELT  QA  L+ A+ +A +  V +S    +
Sbjct: 173 FTGVKVLQVKHSVIKGNRNDVETEVISLILELTREQATKLIVAKKIADIE-VYKSTGKYD 231

Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
            S  + +D  D+ ++   I   +A  +V K
Sbjct: 232 SSDLQ-ADAGDILKDFNAITEYRANEVVIK 260


>gi|89897311|ref|YP_520798.1| hypothetical protein DSY4565 [Desulfitobacterium hafniense Y51]
 gi|89336759|dbj|BAE86354.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 277

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 22/234 (9%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G++ + L          +  +  A+   V+    D+  G V+T ++++ V     N+ 
Sbjct: 9   VLGVLCIVLSLFICFVLTPLFNQGVARKATVVRVVKDIKSGGVITKDMVQTVEVGSYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           +  I         + + G      +L GD I  EK+ D      + L  L   KRA ++ 
Sbjct: 69  ENVIRQS------ETVIGKYAEADLLPGDSILTEKVSDTPASENAYLYSLNGDKRAISVS 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID-----------HNI 183
           I   +  + G +   D V V+      +    +   L+ + VI +               
Sbjct: 123 IKSFAQGLSGKLISGDIVSVIAPDYKKQGATVIPPELTYVEVIGVTASTGYDTGAGEQIK 182

Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNPSSSEDSD 235
           D  E   + +T TL + P Q K L   ++  KL L L  R   +     +E  D
Sbjct: 183 DGGEERELPATVTLLVAPEQGKILAELEAEGKLHLSLVHRGAQETAAQFTELQD 236


>gi|78066130|ref|YP_368899.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
 gi|77966875|gb|ABB08255.1| Flp pilus assembly CpaB [Burkholderia sp. 383]
          Length = 300

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
                +   +    A++ G+ A  ++         V      + + V+++   L  G  +
Sbjct: 3   NNLTKIIAGLLIAIAVLLGVYAW-MLGRKPADVAPVAATVATQSVPVVVTTRALPAGQPI 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L+           G   D        +L G +    I     I    L    + GL
Sbjct: 62  PADALKVQQ--STAAPQGAFADPL------QLVGRVPAADIPAQAAIVASAL----SSGL 109

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------------PTVT 168
           +  +  G+RA  + +  ++AVG  ++P ++VDV +                         
Sbjct: 110 AEQIAPGERAVAIKVDETNAVGNRVRPGNYVDVFLNLKRDGTGVAIGGTSTAEIVNTQAR 169

Query: 169 VVLSNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           +++S +RV++        +          TA L +   Q  AL  A+   +L L LR+  
Sbjct: 170 LLMSKVRVLSFGDATTERDSSNGSVVGMRTAVLAVPTAQVDALTLAEQSGRLVLALRNPR 229

Query: 225 DLNPSSSEDS 234
           D + ++   +
Sbjct: 230 DDDVAAQTVA 239


>gi|225375669|ref|ZP_03752890.1| hypothetical protein ROSEINA2194_01294 [Roseburia inulinivorans DSM
           16841]
 gi|225212526|gb|EEG94880.1| hypothetical protein ROSEINA2194_01294 [Roseburia inulinivorans DSM
           16841]
          Length = 282

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 16/223 (7%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G++ + +          ++    ++   ++    D+  G  +   +L+ V     N+ 
Sbjct: 9   VLGVLCIAVSLLICFAVTPLVNAGLSQKTTIVRFVKDVKAGEEIKKGMLQEVEVGGYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           +  +       ++ E +G  +   +  GD I  EK+ D        L  L   K+A ++ 
Sbjct: 69  ENVLR------SITEAEGKYLTADVYAGDYIVAEKVADEPAAENKYLYNLNGEKQAISIT 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------DHNIDSDE 187
           IS  +  + G +K  D V V+    L   +  +   L  + VIA+        +  + +E
Sbjct: 123 ISSFAEGLSGKLKSGDIVSVIAPDYLGSGETVIPAELKYVEVIAVTAKSGYDANTQEQEE 182

Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
              + ST T+ + P Q++ L   ++  ++ L L    D   ++
Sbjct: 183 EKELPSTVTVLVRPEQSRLLARLEAEGEIHLSLVYRGDSQKAA 225


>gi|228918617|ref|ZP_04082054.1| hypothetical protein bthur0012_57520 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228841025|gb|EEM86230.1| hypothetical protein bthur0012_57520 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 286

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++        V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKSSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +       + +++ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----VSKRDVVGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|326943576|gb|AEA19469.1| hypothetical protein CT43_P281127 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 286

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++        V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +         +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNVLR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|229182299|ref|ZP_04309574.1| hypothetical protein bcere0005_56080 [Bacillus cereus 172560W]
 gi|228601155|gb|EEK58701.1| hypothetical protein bcere0005_56080 [Bacillus cereus 172560W]
          Length = 286

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++        V      VAGI                  EN  K   V+++  D+  
Sbjct: 1   MKPSKFQKKQITAVGLAAITVAGIYGYNHF----------AVENAVKPTKVVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +   +L     P + +    +       + +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEEMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKDGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|167772246|ref|ZP_02444299.1| hypothetical protein ANACOL_03621 [Anaerotruncus colihominis DSM
           17241]
 gi|167665349|gb|EDS09479.1| hypothetical protein ANACOL_03621 [Anaerotruncus colihominis DSM
           17241]
          Length = 281

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 83/226 (36%), Gaps = 19/226 (8%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G+I + L          +  ++ ++   ++     +  G  +T ++++ V     N+ 
Sbjct: 9   VVGVICIMLSLLICFGLTPLFNQSLSQKAEIVRVVQPIRAGDEITESMVQTVEVGGYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           +  +         +   G      +  GD I   KL D      + L  L   ++A ++ 
Sbjct: 69  EDVLRQ------KESAVGKYATADLAVGDYIIPSKLSDAPAAENAYLYSLDGSQQAISVS 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184
           I   +  + G ++  D V V+      + +  V   L  + +I++              D
Sbjct: 123 IKSFAEGLSGKLQSGDIVSVIAPDYKQQGQTVVPAELQYVEIISVTASSGYDANTGAPAD 182

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
            +E   +  T TL ++P QAK L   ++   + L L    D   + 
Sbjct: 183 EEEDKELPDTVTLLVSPEQAKVLAELEAEGTIHLALVYRGDRKNAE 228


>gi|163801678|ref|ZP_02195576.1| hypothetical protein 1103602000597_AND4_09497 [Vibrio sp. AND4]
 gi|159174595|gb|EDP59397.1| hypothetical protein AND4_09497 [Vibrio sp. AND4]
          Length = 274

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 97/269 (36%), Gaps = 27/269 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ + +  +     G+I +    P  + T  V +    K+++V ++      G  
Sbjct: 1   MRSRLVLLVAIVALIVGALGVIDLFKSEPQAITTAPVTSNKKEKYVSVWMTTEVYEKGNA 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           +    +     P        I +  Q +        L+   + +G+ +  E  V+    G
Sbjct: 61  IKAQGVVKQQLPLSKALKLGIREDTQISFSPS---ALLNRGLAQGEVVLPEYQVNPDQPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167
            +  L+  G     + +S  + + G I+P   +D++ V S +                  
Sbjct: 118 YIDLLIKDGMTLYPLKVSTQNLIKGYIRPGTFIDILTVSSPNANLATGAEKPKRFKGVKA 177

Query: 168 TVVLSNIRVIAIDHNIDSDE--------RVLVGSTATLELTPMQAKALVAAQSVAKLSL- 218
           ++ L +++V+ I ++             +    +T  +E+ P     L  AQ    L + 
Sbjct: 178 SMFLKHVKVLNIGNDEKDKNPVSARSPSKEESLTTVIIEVKPDDLARLALAQQ--TLHIE 235

Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           V RS     P  +E  ++ D      E++
Sbjct: 236 VYRSQTYNQPEYAEVRNIIDNYTGIDELR 264


>gi|153956473|ref|YP_001397238.1| hypothetical protein CKL_3890 [Clostridium kluyveri DSM 555]
 gi|219856777|ref|YP_002473899.1| hypothetical protein CKR_3434 [Clostridium kluyveri NBRC 12016]
 gi|146349331|gb|EDK35867.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219570501|dbj|BAH08485.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 276

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 84/232 (36%), Gaps = 25/232 (10%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G++ + L          +  ++ ++   ++     + +G  +T ++++ V     N+ 
Sbjct: 9   VIGVVCIVLSLLICFAVTPLFNQSISQKTEIVRVTKPIKIGEAITKDMVQTVEVGGYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           +  +           + G      ++ GD I   K+ D      + L  L   K+A ++ 
Sbjct: 69  EDVVRHTD------TVIGKFASADLVPGDYIIASKIADTPAAENAYLYNLTGKKQAISVS 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID-------------- 180
           +   ++ + G +   D V +V      +    +   L  + VIA+               
Sbjct: 123 VKSFAAGLSGKLISGDIVSIVAPDYKKQGVTVIPPELQYVEVIAVTADSGYDADQRNNEP 182

Query: 181 --HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
              +   D    + +T TL +TP Q+K L   ++   L + L        ++
Sbjct: 183 NPSSKQEDTEKELPATITLLVTPEQSKILAELEADGTLHVSLVYRGSKENAA 234


>gi|283797119|ref|ZP_06346272.1| Flp pilus assembly protein CpaB [Clostridium sp. M62/1]
 gi|291075536|gb|EFE12900.1| Flp pilus assembly protein CpaB [Clostridium sp. M62/1]
          Length = 280

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 85/227 (37%), Gaps = 19/227 (8%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76
            V G+I + L          +  +  +    ++    ++  G  +T ++++ V     N+
Sbjct: 8   AVIGVICIVLSLIICFAVTPLFNKAISDKTEIVRVVKEIRTGEEITADMVKTVEVGAYNL 67

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATM 134
            +  +       + + + G      ++ GD I   K+ +      + L  L   K+A ++
Sbjct: 68  PEDVVR------STETVVGKFASADMVPGDYIIASKIAEEPAAENAYLYSLTGEKQAISV 121

Query: 135 DISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNI 183
            +   ++ + G ++  D V V+      +    +   L  + VIA+            + 
Sbjct: 122 SVKSFANGLSGKLQSGDIVSVIAPDYKKQGLTVIPPELKYVEVIAVTANSGADANTGEHS 181

Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
           + +    +  T TL +TP Q+  L   ++   + L L    +   ++
Sbjct: 182 EDEGDKELPDTVTLLVTPEQSMILAELEADGDIHLSLVYRGEQKNAA 228


>gi|229194284|ref|ZP_04321123.1| hypothetical protein bcere0002_58680 [Bacillus cereus ATCC 10876]
 gi|228589183|gb|EEK47163.1| hypothetical protein bcere0002_58680 [Bacillus cereus ATCC 10876]
          Length = 286

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++        V      VAGI                  EN  K   V+++  D+  
Sbjct: 1   MKPSKFQKKQITAVGLAAITVAGIYGYNHF----------AVENAVKPTKVVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +   +L     P + +    +       + +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEEMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKDGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQGVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|302387441|ref|YP_003823263.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1]
 gi|302198069|gb|ADL05640.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1]
          Length = 277

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 91/252 (36%), Gaps = 28/252 (11%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G+I + L          +  ++  +   ++     + +G  +T ++++ V     N+ 
Sbjct: 9   VIGVICIVLSLLICFAITPLFNQSITQKTEIVRVTKPIKIGETITKDMVQTVEVGGYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           +  +           + G      +  GD I   K+ D      + L  L   K+A ++ 
Sbjct: 69  EDVVRHTD------TVIGKFASADLAPGDYIIASKIADAPAAENAYLYNLTGEKQAISVS 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-------- 186
           +   ++ + G +   D V +V      +    +   L  + VIA+  +   D        
Sbjct: 123 VKSFAAGLSGKLISGDIVSIVAPDYKKQGVTVIPPELQYVEVIAVTADSGYDANQQNGKS 182

Query: 187 ---------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNPSSSEDSD 235
                    +   + +T TL +TP Q+K L   ++   L + L  R   +     +E  D
Sbjct: 183 NPSSEQADADEKELPATVTLLVTPEQSKILAELEANGTLHVSLVYRGSKENAAKFTEAQD 242

Query: 236 VWDVQEEGKEIQ 247
               +   +E++
Sbjct: 243 SVLSKLYPEEME 254


>gi|331012567|gb|EGH92623.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 319

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 82/282 (29%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45
           M       + V  +  AL+AG + + +  P            P                 
Sbjct: 1   MSSRITTVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVED 60

Query: 46  ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T   L       +    G          + +L G      +
Sbjct: 61  ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSTWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +          G L+ ++   +RA  + +       G + P D+VDV++      
Sbjct: 113 TAGTWLSENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170

Query: 163 RKP--TVTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPM 202
                +  VV+  +RV+ +   +  D                         T T+ ++  
Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVSEA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N  +   S+        +
Sbjct: 231 VLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272


>gi|149927034|ref|ZP_01915292.1| Flp pilus assembly CpaB [Limnobacter sp. MED105]
 gi|149824255|gb|EDM83475.1| Flp pilus assembly CpaB [Limnobacter sp. MED105]
          Length = 321

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 84/228 (36%), Gaps = 27/228 (11%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
            + M  +S  +V+      +   +   V++S  ++  G  VTP +L+   F       G 
Sbjct: 19  FMVMAFLSGQNVKKGGEAIKTELERFPVVVSTVEIQFGKPVTPEMLKVEKF--AIAPSGA 76

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
             D+       ++ G      I KG P+  +      +G +++ + +G RA  + +  ++
Sbjct: 77  FTDI------GDVIGKKPLFNIGKGLPVTNQYF---ESGAVAAEVREGYRAFALRLDENN 127

Query: 141 AVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVG----- 192
                IK  D+VDV       S    +    +++  +RV+++   + +            
Sbjct: 128 VATAKIKAGDYVDVFSIFKSNSRDIEETISRLIMPKLRVLSVGSQLVNAPETTNAANDKD 187

Query: 193 --------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
                       +E+       L  AQ+  +L +VLRS  +       
Sbjct: 188 VNNRPVRLKAMMVEVPTGDINTLAIAQTQGELFVVLRSPDEEELPDMS 235


>gi|311107632|ref|YP_003980485.1| Flp pilus assembly protein CpaB 2 [Achromobacter xylosoxidans A8]
 gi|310762321|gb|ADP17770.1| Flp pilus assembly protein CpaB 2 [Achromobacter xylosoxidans A8]
          Length = 319

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 88/251 (35%), Gaps = 32/251 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA-------KFINVLISKG 53
           M     +   +  V  LV   +A RL S        V     A       K   V++++ 
Sbjct: 1   MSSLSKIVAGMLLVAGLVLAFVAWRLASAPASPPPGVAPAPVAAAPAEPLKLHPVVVARQ 60

Query: 54  DLAVGMVV-TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK 112
            +  G  + + ++L    +  +    G   D+        L+G + +V I  GDPI    
Sbjct: 61  PIPAGSRIDSASMLTVAQW--QVALSGGFADIAP------LEGAVAKVDIAAGDPIVPSL 112

Query: 113 LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVV 170
           L      GL+  L  G+RA  + +      G  I P D VDV  +   S         ++
Sbjct: 113 LTQ----GLARQLKPGERAVAIAVDEVIGGGNRIVPGDMVDVFFMIEKSAEVAVGQARLL 168

Query: 171 LSNIRVIAID----------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            S +RV+A              +          TA L +   +   L+ A    +L L L
Sbjct: 169 QSQVRVLAYGRASVEGPDEKSALQQGGPGQPARTAVLAVPVDRVNELMLAGRAGRLQLAL 228

Query: 221 RSIADLNPSSS 231
           R + D +   +
Sbjct: 229 RPVGDDSMPDA 239


>gi|153833237|ref|ZP_01985904.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01]
 gi|148870508|gb|EDL69423.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01]
          Length = 274

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 99/268 (36%), Gaps = 25/268 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ + +  +     G+I +    P  + T  V+     ++++V ++      G  
Sbjct: 1   MRSRLVLLVAIVALIVGALGVIDLFKSDPQPIATAAVVENTNEEYVSVWMTTEAYEKGHA 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           ++   +     P        + +  Q +    +   L+   +  GD +  E  V     G
Sbjct: 61  ISAQGVVKQQLPLNEALALGVREDAQISFSPSI---LLNRSLDLGDVVLPEYQVSPGQPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167
            +  L+ +G     +++S  + +   I+P   +D++ V S ++                 
Sbjct: 118 YIDLLVTEGMTLYPLEVSDQNLINDYIRPGSFIDILTVSSPNDNLAQNIDKPKRFKGVKA 177

Query: 168 TVVLSNIRVIAIDHNIDSD--------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           ++ L +++V+ I  +   D         +    +T  +E+ P     L  AQ    + + 
Sbjct: 178 SMFLKHVKVLNIGDDAKGDSSVTARSPSKENGLTTVVIEVKPDDLAKLALAQRTMHIEI- 236

Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
            RS     P  +E  +V D     +E++
Sbjct: 237 YRSQTYSKPEYAEVRNVIDNYTGIEELR 264


>gi|187921505|ref|YP_001890537.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
 gi|187719943|gb|ACD21166.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN]
          Length = 366

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 42/286 (14%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           ++  +   V A +  ++   L        +++        + V++   D+ V   ++ + 
Sbjct: 16  ILLFLAVLVAAGLTFLLYKYLSDREKKLKDDMSAHRVRAGVVVVVPARDVPVDTPLSSSD 75

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
                   + V+D  I      +   +     +  P+ +G P+R   +        S +L
Sbjct: 76  FVAREIDGDLVYDDMIR----ADNFDKYRMSHLVKPVRRGLPLRAADIDALHGRDFSDVL 131

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------LSERKPTVTVVLSNIRVIAI 179
             G RA T+DI   ++   M++P + VDV  +         ++ K    ++L+N  ++A 
Sbjct: 132 RSGTRAVTVDIDTVNSTALMLRPGNRVDVYWIGKVYHQDNSNDDKKVAQLMLANTLILAT 191

Query: 180 DH--------------------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                                 +  S +  +  +T TLE+    A  +  AQ +  L L+
Sbjct: 192 GQDMRPRDAGEAMQEDPANANSSAMSRQPGVGYTTVTLEVPVADAGRIALAQKIGGLRLI 251

Query: 220 LRSIADLNP------------SSSEDSDVWDVQEEGKEIQIIKAGV 253
           LR+  D                      +       K ++II  G 
Sbjct: 252 LRNSDDKGTNGPSLVQENDVFVDPGRGRLSGSGPAPKTVEIIAGGS 297


>gi|323525745|ref|YP_004227898.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
 gi|323382747|gb|ADX54838.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001]
          Length = 320

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 74/218 (33%), Gaps = 24/218 (11%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
                +         V+++   L  G  +  + L     P     +G   D         
Sbjct: 30  PAPAPVAPVRQTVFPVVVATRVLPAGKPIAADALRVQPLPIN--PNGAFADPSL------ 81

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           + G +    I    P+  E+L    + GL+  +  G+RA  + +  S+AVG  ++P + V
Sbjct: 82  VAGRVPAADIGAEAPVLEEQL----SSGLAERIQPGERAVAVRVEESNAVGNRLRPGNFV 137

Query: 153 DVVMVRSLSER--------KPTVTVVLSNIRVIAIDHNI----DSDERVLVGSTATLELT 200
           DV                      +++S +RV+A  +       S +   +  TA L + 
Sbjct: 138 DVFFTLKRDGNLGSGGEIEHTQARLLMSKLRVLAFGNATAAGDTSGDPNGMVRTAVLAVP 197

Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
                 L  A++  +L   LR+  D     +       
Sbjct: 198 VADVDRLTLAETSGRLVFALRNPKDNEVIDAGAFAPLP 235


>gi|110833079|ref|YP_691938.1| hypothetical protein ABO_0218 [Alcanivorax borkumensis SK2]
 gi|110646190|emb|CAL15666.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 298

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 101/264 (38%), Gaps = 31/264 (11%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT----------ENPAKFINVLISKG 53
            R + ++ + + ++VA I+A+  ++      +                        ++  
Sbjct: 3   ARWLYMLPALILSVVAVILALVGLARDPSPAKPERAGADEALAQQRAADKPKYTYWVATR 62

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           +L +G +V  +  + +                   A  ++ G  +   +  G+ +    L
Sbjct: 63  ELNIGSIVADDDFQKIDVSAPL--------SSALQADAQVVGQRLFQHVRNGEILSQVHL 114

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPTVTVVLS 172
                  L+  +P   RA  +DI  +SAVGG+++P D VDV++  R   + +PT  ++L 
Sbjct: 115 --EAGNRLAQSVPAQFRAFAIDIDNASAVGGLLEPGDLVDVLVHFRKGQDEQPTSMILLK 172

Query: 173 NIRVIAIDHNIDSDERV--------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRS-- 222
            I V+A+   +   ++            +TA L +       L+ A S  +L L +    
Sbjct: 173 AIEVLAVKGQLQDADKTDEEKEKSRSRNATAVLAIPREALPKLLLADSNGELRLAMAGED 232

Query: 223 IADLNPSSSEDSDVWDVQEEGKEI 246
           I      S+    V    +E KE+
Sbjct: 233 IGSEQNESAGGGAVGLSGKEQKEL 256


>gi|186473163|ref|YP_001860505.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815]
 gi|184195495|gb|ACC73459.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815]
          Length = 339

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 93/229 (40%), Gaps = 16/229 (6%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
            +   L         EV  +   + I V++ + D+  G  ++ +         + V+D  
Sbjct: 31  FVYRYLGEREAHVRAEVAGKLALRGIEVVVPRRDVPAGTPLSSDAFVSREIAADLVYDDM 90

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
           +      +A        +   ++ G P+R            S +LP G+RA T +I   +
Sbjct: 91  VR----VDAFDAFRKAKLVRAVMHGRPLRTSDFDAPRGRDFSDMLPAGQRALTFEIDAVN 146

Query: 141 AVGGMIKPNDHVDVVMVRSL----SERKPTVTVVLSNIRVIAIDHNIDSDE--------R 188
           +   M++P + VD+  V +     +  +  V ++L  + V+A   ++++ +         
Sbjct: 147 STASMLRPGNRVDMYWVGTQAYASAGERKAVRLLLPGVLVLATGRSVNARDAGDVDEPAS 206

Query: 189 VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
                T T+++    A  +V AQ +  L L+LR+ AD +  ++   ++ 
Sbjct: 207 ASRYDTVTMQVPAADAPRIVLAQKMGTLRLILRNAADDDDIAASPVELT 255


>gi|207724790|ref|YP_002255187.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2]
 gi|206590015|emb|CAQ36976.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2]
          Length = 311

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 83/240 (34%), Gaps = 29/240 (12%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76
           ++ G +A +              EN      V+++   L  G  +T + +   + P    
Sbjct: 18  VILGAVAWKSAHRPPAPAAAQQNENGKTLYPVVVTVKPLEAGKPITADQVAVESLPIN-- 75

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136
                 D        ++ G     PI  G P+   +L    + GL+  +  G+RA  + +
Sbjct: 76  PADAFAD------AGKVVGREPITPIGTGVPLIGSQL----SSGLALQVAPGQRAVAITV 125

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDERVL--- 190
                VG  + P D+VDV +V     ++       ++L ++RV+A      ++       
Sbjct: 126 DEVVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRVLAFGPLAINEGPQTQPE 185

Query: 191 -----------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
                         TA L +       L  A    +L L LR+ +D    +    D   +
Sbjct: 186 SGANTVTRRVDQAKTAVLAVPVESVSQLAIAHQSGRLLLALRNPSDDAEPTVRPQDAQAL 245


>gi|167620126|ref|ZP_02388757.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           Bt4]
          Length = 234

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 29/228 (12%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--------------PN 88
            + + V ++  DL  G+++    L W      +V  G + +                   
Sbjct: 1   PQQVRVRVAAADLPAGLLLRDVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAA 60

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIK 147
           A  +L G L+R P+ +G P+    ++     G L++ L  G RA ++ I   S   G+I+
Sbjct: 61  AAGDLKGDLLRHPVREGMPLGPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIE 120

Query: 148 PNDHVDVVMVRS---------LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGS 193
           P D+VDV++ +            ER      + + +RV+A+         D+ +      
Sbjct: 121 PGDYVDVLLTQQLAAPGGAPADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRAR 180

Query: 194 TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
           T T E++   A+ +     +  LSL LRS A  +  +   +       
Sbjct: 181 TVTFEVSSHDAQVITVGAHLGALSLALRSFATSDRGAVGLASAEPPAP 228


>gi|221066740|ref|ZP_03542845.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1]
 gi|220711763|gb|EED67131.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1]
          Length = 352

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 93/304 (30%), Gaps = 66/304 (21%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT---------------ENPAKF 45
           M LT+++   +  V A+   I+A  +            +                 PA  
Sbjct: 1   MNLTKILA-GLLVVLAIALAIMAWIMGRQPQRAVAPAPSSINAIDTNISAEASKPRPAPM 59

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
            +V+++   +A G  +T   L+ V+                  + +   G      +   
Sbjct: 60  HDVVVTAKPVAAGQKLTAEDLKLVSKTAAVA--------DGVLSAEAAVGRTTLTALAAD 111

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-- 163
            P+  ++L+     GLS  +  G+RA ++ +    A G  ++P D VDV           
Sbjct: 112 APLLEQQLI----SGLSLQIEPGQRALSIAVKEPMAAGNHVRPGDFVDVYFTLDSKSNAA 167

Query: 164 ------KPTVTVVLSNIRVIAIDHNI------------------------------DSDE 187
                      ++L+  RV+A   +                               +   
Sbjct: 168 DDKLNVDTQTRLLLARSRVLAYGASNVEVPPPTAAQRLKAQQEEEAGNKGQRRNTGNDQR 227

Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
                +TA L +     + L  A+   +L+L LR   DL+   +               +
Sbjct: 228 SQQSANTAVLAVPLDDVERLTLAEKYGQLTLALRHPDDLSVPEAALFATLPTALLPVAGR 287

Query: 248 IIKA 251
           + K 
Sbjct: 288 LAKG 291


>gi|228938208|ref|ZP_04100823.1| hypothetical protein bthur0008_8760 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971086|ref|ZP_04131719.1| hypothetical protein bthur0003_8680 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228788609|gb|EEM36555.1| hypothetical protein bthur0003_8680 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821441|gb|EEM67451.1| hypothetical protein bthur0008_8760 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 286

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 87/242 (35%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++        V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +       + +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           R     S++  L  G+ A  + + + ++ G  + PN +VD+    +V+     K     +
Sbjct: 106 REELPDSAILNLKDGEVAFPLLVDLETSSGNSVIPNTYVDLYFKQIVKDGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+++ 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|319795563|ref|YP_004157203.1| flp pilus assembly protein cpab [Variovorax paradoxus EPS]
 gi|315598026|gb|ADU39092.1| Flp pilus assembly protein CpaB [Variovorax paradoxus EPS]
          Length = 319

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 23/234 (9%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
             L +        +  +  ++  +V++++  +  G  V P ++   + P E + +  +  
Sbjct: 36  YYLRASEREIAASLEKDADSQRRDVVVARQPIGEGSQVLPGMVAKRSVPNEYLHNDALT- 94

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143
              P +  +  G  + VP+  G P+             +  + +G RA T+ +   S++ 
Sbjct: 95  ---PESFAQFAGRQLTVPVAAGKPLLASFFAAPRK-VFAQEIEQGVRAVTIPVDEISSIS 150

Query: 144 GMIKPNDHVDVVMVRSLSERKPTVTVV--LSNIRVIAIDHNIDSDERV------------ 189
           GM++  D +D + V   S       V+  L ++ V A                       
Sbjct: 151 GMLRAGDRIDFMYVVEKSAANDPSVVIPLLQDVEVRATGQITSEQFAAMRKRADVSADTD 210

Query: 190 ----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
                  +T T+ + P  A+ L+ AQ + K+   LR+  D    ++    V   
Sbjct: 211 PYARQRYATVTVAVQPQDAQKLILAQRLGKIIATLRNPEDRATMTTGVDAVDLD 264


>gi|229065593|ref|ZP_04200823.1| hypothetical protein bcere0026_55960 [Bacillus cereus AH603]
 gi|228715662|gb|EEL67455.1| hypothetical protein bcere0026_55960 [Bacillus cereus AH603]
          Length = 286

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 86/242 (35%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++        V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P +++    +       + +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDSIPPNALR-----VSKKEVVGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L   + A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKNEEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++P Q + L  A+ + 
Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKMLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|303241416|ref|ZP_07327919.1| SAF domain protein [Acetivibrio cellulolyticus CD2]
 gi|302591025|gb|EFL60770.1| SAF domain protein [Acetivibrio cellulolyticus CD2]
          Length = 255

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 89/252 (35%), Gaps = 30/252 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MKL  +      G+  +V  +    +++P      +           ++    D+  G V
Sbjct: 1   MKLNFIKSRTAIGLICIVLSLFICFILTPMFNSGLKA-------QTEIIRISSDMKKGEV 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  N LE V     N+    I         +++ G  V   ++KGD I   K+ D+    
Sbjct: 54  IAGNKLEVVKVGAYNLPQNIIKR------KEDVVGKYVNCDLMKGDYILSSKVTDKPLLE 107

Query: 121 LSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
              L  L   K A ++ I   ++ + G ++  D V ++     +    T+   L  ++V+
Sbjct: 108 FEYLNDLDGTKVAMSITIKSFAAGLSGKLESGDIVTLISSNYDNMGSATIPSELKYVKVL 167

Query: 178 AIDHNI------------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLS--LVLRSI 223
           A                   D+   + ST TL +   QAK L   +    +   LV R  
Sbjct: 168 AATTESGMDKQQAQAEIKKEDKETELPSTLTLIVNTEQAKVLADLEQKGNIHATLVYRGS 227

Query: 224 ADLNPSSSEDSD 235
            +       D D
Sbjct: 228 GENAKKFLNDQD 239


>gi|299532818|ref|ZP_07046205.1| putative signal peptide protein, CpaB like protein [Comamonas
           testosteroni S44]
 gi|298719042|gb|EFI60012.1| putative signal peptide protein, CpaB like protein [Comamonas
           testosteroni S44]
          Length = 329

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 95/282 (33%), Gaps = 36/282 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI------NVLISKGDLA 56
           +  +  I V  + A+   +     +     Q  +      A         +V+++   + 
Sbjct: 1   MVNVAKIAVGVLLAVALALGVYGWMLARAPQAADPQASASASDSKSNAGMSVVVAAQAIP 60

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G  +    L+    P +   DG   ++      Q   G +  V + KG P+   ++V  
Sbjct: 61  AGQALKTEDLQLTQLPAK--PDGAYGEI------QAAVGSVPAVDVPKGAPVLQGQMV-- 110

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSN 173
              GL+  L +G+RA  + +  S   G  I+P D VDV            +    ++LS 
Sbjct: 111 --TGLALKLSEGERAVAVKVDESIGAGNRIRPGDFVDVFFALRRDGNEIDQSQARLLLSR 168

Query: 174 IRVIAID------------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            RV+A                           TA L +   +   L+   S   L L LR
Sbjct: 169 KRVLAYGAASVDALSSAEKTEGKQANGPDNARTAVLAVPVAEVNQLLLGGSNGSLLLALR 228

Query: 222 SIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEGIS 263
           +  D+    S   + +        + + K  V V  +G   +
Sbjct: 229 NPMDMTEPDS---EKFAPLPGILAVAMAKGSVAVPLEGADAA 267


>gi|330938338|gb|EGH41970.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 319

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 88/282 (31%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45
           M     + + V  +  AL+A  + + +  P       +    P                 
Sbjct: 1   MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAVVIPPSEPVTTETAIQTPPTPPVED 60

Query: 46  ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T + L              +       A+ ++ G      +
Sbjct: 61  ALRHNVVVLAKDIPANTAITADDLTIERL--------KVAPPRSFEAIDKIVGRSSWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +          G L+ ++   +RA  + +   +   G + P D+VDV++      
Sbjct: 113 TAGSWLTESNF--EAGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 170

Query: 163 RKP--TVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202
             P  +  VV+  +R++ +                  D  +  +++ +   T T+ L   
Sbjct: 171 SNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDLNADERLKQEQQRINARTVTVALPQA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N      ++        +
Sbjct: 231 LVARLMLASQTGVLRLAVRSADEGNLQDYWANEAGGPDAAER 272


>gi|323341956|ref|ZP_08082189.1| flp pilus assembly CpaB [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464381|gb|EFY09574.1| flp pilus assembly CpaB [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 269

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 105/283 (37%), Gaps = 58/283 (20%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +L+ +VV+      AG+  + L++P     +E+          V+++   L     
Sbjct: 1   MDKNKLISVVVA------AGVFLLALMNPIQGLKKEI---PKKDLTQVVVALKPLTAQTR 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK--LVDRGN 118
           +T +++E     ++   +G   D  +      + G +    +  GD    EK  +V +G+
Sbjct: 52  ITQDMIEVKNVHKDAAPEGAFADAER------VVGKVTTTKMSVGDMFTGEKVEVVGQGS 105

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----------------- 161
            GLS++L    RA T+ +     + G+I+  + +D++ V                     
Sbjct: 106 SGLSTVLTDNMRAYTVKLEGQYGMQGLIRVGNKIDIITVLDSDLPEDTLQKYDYLKKNYP 165

Query: 162 ---------------------ERKPTVTVVLSNIRVIAIDHNIDSDER---VLVGSTATL 197
                                 ++    ++L N  V+AID +   D++     + +T TL
Sbjct: 166 QLYAGSVETAVDGKERIPVLGLKEKKAVLLLQNKEVLAIDQDTLPDDKKVADKMYTTVTL 225

Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
            ++   A  L  ++SV     +LRS               D+ 
Sbjct: 226 AVSAEDALKLAVSESVGTNRAILRSHDHDKVDKVPGVITGDLL 268


>gi|71737039|ref|YP_276549.1| CpaB family Flp pilus assembly protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557592|gb|AAZ36803.1| Flp pilus assembly protein CpaB family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 313

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 81/276 (29%), Gaps = 48/276 (17%)

Query: 7   MGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-----------------INV 48
           M + V  +  AL+AG + + +  P            P                     NV
Sbjct: 1   MVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVEDALRHNV 60

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           ++   D+     +T   L       +    G          + +L G      +  G  +
Sbjct: 61  VVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSTWRTLTAGTWL 112

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--T 166
                     G L+ ++   +RA  + +       G + P D+VDV++           +
Sbjct: 113 SENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDTSNLNRS 170

Query: 167 VTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPMQAKALV 208
             VV+  +RV+ +   +  D                         T T+ +       L+
Sbjct: 171 SQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEALLARLM 230

Query: 209 AAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
            A     L L +RS  + N  +   S+        +
Sbjct: 231 LASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 266


>gi|300697743|ref|YP_003748404.1| Flp pilus assembly protein precursor (CpaB) [Ralstonia solanacearum
           CFBP2957]
 gi|299074467|emb|CBJ54017.1| putative Flp pilus assembly protein precursor (CpaB) [Ralstonia
           solanacearum CFBP2957]
          Length = 311

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 85/245 (34%), Gaps = 29/245 (11%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76
           ++ G +A +              EN      V+++   L  G  +  + +   + P    
Sbjct: 18  VILGAVAWKSAHRPPAPAVAQQNENGKTLYPVVVTIKPLEAGKPIAADQVAVQSLPIN-- 75

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136
                 DV       ++ G    VPI  G P+   +L    + GL+  +  G+RA  + +
Sbjct: 76  PADAFADV------GKVVGREPIVPIGIGVPLIGSQL----SSGLALQVAPGQRAVAITV 125

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDERVL--- 190
                VG  + P D+VDV +V     ++       ++L ++RV+A      ++       
Sbjct: 126 DEVVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRVLAFGPLAINEGPQTQPE 185

Query: 191 -----------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
                         TA L +       L  A    +L L LR+ +D    +    D   +
Sbjct: 186 AGANTVTRRVDQAKTAVLAVPVESVSQLAIAHQSGRLLLALRNPSDDAEPTVRPQDALAL 245

Query: 240 QEEGK 244
               +
Sbjct: 246 AMVSR 250


>gi|312882143|ref|ZP_07741892.1| Flp pilus assembly protein CpaB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370189|gb|EFP97692.1| Flp pilus assembly protein CpaB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 276

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 96/270 (35%), Gaps = 27/270 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ I +  +     G++             EV++    +++ V ++      G  
Sbjct: 1   MRTPLIIFITIVALIVGALGVVDFLNTKDKPTVITEVVSPEEDQYVAVWVTINFYNRGDE 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE-KLVDRGNG 119
           VT   +     P        I +  + +    +   L+   +  G+ +  E ++     G
Sbjct: 61  VTSQGVVKKQLPLNEALKLGIREDAEISFSPSV---LLNRSLKTGEVVLPEYQVAPNQPG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167
            +  L+  G     + IS  + +   I+P  ++D++ V S +E                 
Sbjct: 118 YVDLLVSPGMTLYPLQISNRNLIKDYIRPGSYIDILTVSSPNENLAGNLDKPKRFKGVEA 177

Query: 168 TVVLSNIRVIAIDHNIDSDE----------RVLVGSTATLELTPMQAKALVAAQSVAKLS 217
           T+ L N++V+ I    D  E               +T  +E+ P +   L  AQ    + 
Sbjct: 178 TMFLKNVKVLNIGGGGDDSENNYVTAQSPVEEDGVTTVVIEVDPNELTRLALAQRTMHIE 237

Query: 218 LVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
            V RS A      +E  ++ D     +E++
Sbjct: 238 -VYRSQAYTQSEHAEVRNIIDNYTGIEELR 266


>gi|296122068|ref|YP_003629846.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776]
 gi|296014408|gb|ADG67647.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776]
          Length = 334

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 14/222 (6%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + RL   +++ V   V G++ +  +    +  EE   +      NV ++  D+  G ++T
Sbjct: 1   MRRLTPALLTLVMFGVVGLLVVAYIGKSLLAREE--KKPVIATRNVPMAISDIEPGTLIT 58

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              +         +            A + + G + R  I   +PIR  +L   G     
Sbjct: 59  EGHIGLGPVQNSQL------KPDMLLANRVIVGRVARTKIRAAEPIRAGQLYQPGELP-D 111

Query: 123 SLLPKGKRAATMDISISSA-VGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRVI 177
             +  G RA ++ ++     V GMIKP ++VDV+       +   +      +   ++VI
Sbjct: 112 LRVADGMRAVSISVAEMVGIVDGMIKPGNYVDVLFTVESQSNADLQGGVTMRLFEGVKVI 171

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           AI+ +          +  TLELT  QA  +  A++   L+L+
Sbjct: 172 AINRSFTQSRVERGVNRVTLELTQAQANIITLAEAKGALTLI 213


>gi|330959994|gb|EGH60254.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 319

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 88/273 (32%), Gaps = 48/273 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPH-----------------HVQTEEVITENP 42
           M     M + V  +  AL+AG + + +  P                    Q         
Sbjct: 1   MSSRITMVLAVLFLLGALIAGYLGIVVGRPAEEPAAVPAPAPTVTAELPPQAVPTPPVED 60

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           A   +V++   D+     +TP  L       +    G        + + +L G      +
Sbjct: 61  ALRHDVVVVARDVPAYTPITPEDLLIERL--KVAPPGSF------DTIDKLVGRSSWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +          G L+ ++   +RA  + +       G + P D+VDV++  +   
Sbjct: 113 SAGTWLSESNF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLAEDT 170

Query: 163 RKPT--VTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202
             P     VV+  +RV+++                  D  +  ++R     T ++ +  +
Sbjct: 171 ANPVRSTQVVVPALRVLSVGELLGPDRNGKPVQHVTADERLQQEQRRSSARTVSVAVPEV 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
               L+ A     L L +RS  + N       D
Sbjct: 231 LLGRLMLASQTGVLRLAVRSADEGNLQDYWAGD 263


>gi|89892806|ref|YP_516293.1| hypothetical protein DSY0060 [Desulfitobacterium hafniense Y51]
 gi|89332254|dbj|BAE81849.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 274

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 19/217 (8%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G+I + L          +  ++ ++   ++    ++  G  +T + ++ V      + 
Sbjct: 9   VVGVICILLSLLICFGVTPLFNKSVSQKTEIVRVVKEIKAGDEITKDTVQTVEVGGFGLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           D  I         + + G   +  +  GD I   KL D      + L  L   K+A ++ 
Sbjct: 69  DNVIRQS------ETVIGKYAKSDLSIGDYILNTKLSDTPAAENAYLYNLDGTKQAMSVT 122

Query: 136 I-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184
           I S ++ + G ++  D V V+      +    +   L  + VI++               
Sbjct: 123 IKSFANGLSGKLQSGDIVSVIAADYKKQGTTVIPAELKYVEVISVTASSGYDANTGEAKS 182

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            D+   + ST TL ++P Q+K L   +S  KL L L 
Sbjct: 183 EDDDRELPSTVTLLVSPEQSKVLAELESDGKLHLSLV 219


>gi|126733572|ref|ZP_01749319.1| Flp pilus assembly CpaB [Roseobacter sp. CCS2]
 gi|126716438|gb|EBA13302.1| Flp pilus assembly CpaB [Roseobacter sp. CCS2]
          Length = 258

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 94/238 (39%), Gaps = 16/238 (6%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVIT--ENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
              A  A  +  + +       E+         + +++     DL  G ++T + ++ + 
Sbjct: 1   MGLAGFAVYMVNQYMDTQASALEQERQRSATAIRTVDIYAPSRDLTYGELLTADDVQIIK 60

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGK 129
           +  +++ +G      +          +VR+P+   +PI   K+ + G   G+++LL  G 
Sbjct: 61  YARDHLPEGVFATEEELFPEGLNTPRVVRLPMQVNEPILTAKVTEAGAPQGITALLDSGM 120

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189
           RA  +  SI+ A    ++P D +D+  +  +     +  +V S + +I+++ +       
Sbjct: 121 RAFPLPDSITRAFASELRPTDLIDLYWIGRVGNGPSSSRLVKSRMEIISLEPS------- 173

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS-SEDSDVWDVQEEGKEI 246
                  ++++      L    +   LSL      DL     + ++++ DV      +
Sbjct: 174 -----VVIQVSQEDFADLQVLSAAGSLSLTPVGRDDLEAGDLTIETNIRDVLGIVAPV 226


>gi|260768626|ref|ZP_05877560.1| putative pilus assembly protein [Vibrio furnissii CIP 102972]
 gi|260616656|gb|EEX41841.1| putative pilus assembly protein [Vibrio furnissii CIP 102972]
          Length = 312

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 93/239 (38%), Gaps = 16/239 (6%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
              + + +    +FA+    +   +++ +    +      P +  +  +   DL  G ++
Sbjct: 6   NKAKALKLSAMILFAIAVVFLVSGMLTANPSPPKNAAVSKPIEQYDAWVVVDDLTQGTLI 65

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T ++++        + D  I +           G  V+  ++ G  +  + LV   N  +
Sbjct: 66  TRDMMKPTRV--TQLGDSLIQNPDV------ALGRRVKQDVIAGAYLTSKMLV--PNRPV 115

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIA 178
              LP+  RA  +       VGG ++P DHVDV+++   ++      +   + S++ V+A
Sbjct: 116 IDDLPENYRAIAIRAGEVLTVGGYLQPGDHVDVMLLLKPNKESGAITSARRIASDLMVLA 175

Query: 179 IDHN---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           I       D  ER     +  L +    A  L+ A +  ++ L      +L   + E S
Sbjct: 176 IGQQQNGTDKFEREAQAKSVVLAVHESLAPVLLLADASGEIRLAAVGSKELAAGTYEPS 234


>gi|257790303|ref|YP_003180909.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|325830168|ref|ZP_08163625.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1]
 gi|257474200|gb|ACV54520.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|325487635|gb|EGC90073.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1]
          Length = 215

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 16/224 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMR--LVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58
           MK +R   I ++   A  A + A    +         E +     + + V ++K D+A G
Sbjct: 1   MKRSRTTIIGIACGLACAACVFAYAQGVRGEADAARAEALARYGGEQLEVCVAKRDIAAG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             V  + +E   +  + +            +  ++ G      IL G+ +   +     +
Sbjct: 61  ESVDASAVETRLWVADLLPAEAFR------SSDDVVGKKASSTILAGEVLSERRF---RD 111

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
            G    +P+G  A ++      AVGG +     VDV           +  V+ S + V+A
Sbjct: 112 AGSRLDVPEGLTALSVPAKDVQAVGGAVAAGSRVDVYAT-----GGTSTDVLASGVLVLA 166

Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
              +          S  T+ + P   + +VAA    +L   L  
Sbjct: 167 TSASAQESTTDAKVSWITVAVAPESVQEIVAAAQKTELYFTLPG 210


>gi|228912580|ref|ZP_04076242.1| hypothetical protein bthur0013_66390 [Bacillus thuringiensis IBL
           200]
 gi|228847049|gb|EEM92041.1| hypothetical protein bthur0013_66390 [Bacillus thuringiensis IBL
           200]
          Length = 286

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 84/242 (34%), Gaps = 41/242 (16%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++        V      VAGI                  EN  K   V+++  D+  
Sbjct: 1   MKPSKFQKKQITAVGLAAITVAGIYGYNHF----------AVENAVKPTKVVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +   +L     P + +    +       + +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEEMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + + + ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKDGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214
              +RV A   +   D                ++  V    TL ++  Q + L  A+++ 
Sbjct: 166 FQGVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSTEQLQYLNRAKTLG 225

Query: 215 KL 216
            +
Sbjct: 226 DV 227


>gi|319791193|ref|YP_004152833.1| flp pilus assembly protein cpab [Variovorax paradoxus EPS]
 gi|315593656|gb|ADU34722.1| Flp pilus assembly protein CpaB [Variovorax paradoxus EPS]
          Length = 319

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 92/254 (36%), Gaps = 24/254 (9%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
             L +        +  +  ++  +V+++   L  G  V P ++   + P E V +  I  
Sbjct: 36  YYLRASEREIAASLEKDADSQRRDVVVANRALGDGTTVLPTMVAKRSVPNEYVHNDAIT- 94

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143
              P    +  G  + VP+  G P+             +  + +G RA T+ +   S++ 
Sbjct: 95  ---PETFSQFAGRQLSVPVAAGKPLLASFFSAPRKV-FAQEIEQGVRAITIPVDEISSIS 150

Query: 144 GMIKPNDHVDVV--MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV------------ 189
           GM++  D +D +  + +S +     V  +L ++ V A                       
Sbjct: 151 GMLRAGDRIDFMYMVEKSAANDPSVVVPLLQDVEVRATGQITSEQFAAMRKRSDVSADTD 210

Query: 190 ----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245
                  ST T+ + P  A+ L+ AQ + K+   LR+  D     +   D  D+      
Sbjct: 211 PYAQQRYSTVTVAIQPQDAQKLILAQRLGKIIATLRNPEDRAT-MTSGVDAVDLDAIVAG 269

Query: 246 IQIIKAGVIVNKDG 259
            +  ++  +    G
Sbjct: 270 FRPQRSHAMAVSSG 283


>gi|254245568|ref|ZP_04938889.1| Flp pilus assembly CpaB [Burkholderia cenocepacia PC184]
 gi|124870344|gb|EAY62060.1| Flp pilus assembly CpaB [Burkholderia cenocepacia PC184]
          Length = 309

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 88/263 (33%), Gaps = 30/263 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
                +   +    A++ GI A  ++                  + ++I+   L  G  +
Sbjct: 3   NNLTKIIAGLLIAIAVLLGIYAW-VLGRSASSPPPAQPRTAVTAVPIVIATRTLPGGQPI 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L+  +        G  +D         L G +    +    P+  + LV     GL
Sbjct: 62  PADALKVQS-STVPAPAGAFNDPAL------LVGRMPIRDVPASTPVVADALV----SGL 110

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---------RSLSERKPTVTVVLS 172
           +  +  G+RA  + +  ++AVG  ++P + VDV +                +    ++LS
Sbjct: 111 AEDVQPGERAVAVRVDETNAVGNRLRPGNFVDVFLNLKREVGTTMLDGEVSQTQARLLLS 170

Query: 173 NIRVIAIDHNIDSDER---------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
            +RV++        +                A L +   Q  AL   ++  +L+  LR+ 
Sbjct: 171 KVRVLSFGDATAERDSGNNNGGNGQPTGARIAVLAVPTAQVDALTLGEASGRLTFALRNP 230

Query: 224 ADLNPSSSEDSDVWDVQEEGKEI 246
            D   +    +   D +     +
Sbjct: 231 RDDELALQTVAVRTDNKLSPSAL 253


>gi|237798382|ref|ZP_04586843.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021234|gb|EGI01291.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 318

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 89/281 (31%), Gaps = 47/281 (16%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAK--------------- 44
           M     M + V  +  AL+AG + + +     V      +                    
Sbjct: 1   MSSRITMVLAVLFLLGALIAGYLGIVVSRQAEVPAAVTQSAPSPAEQAPQAPAPQPVEDA 60

Query: 45  -FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
              NV++   D+     +T + +       +    G        ++++ L G      + 
Sbjct: 61  LRHNVVVVARDIPAYTPITADDVVIERL--KVAPPGSF------DSVERLVGRSSWRTLN 112

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
            G  +          G L+ ++   +RA  + +    +  G + P D+VDV++       
Sbjct: 113 AGTWLSESSF--DAGGTLARMIRPYERALALQVDEVISASGQLSPGDYVDVLLYLPEDTL 170

Query: 164 KP--TVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPMQ 203
            P  +  VV+  +R++ I                  D  +  ++      T T+ +    
Sbjct: 171 NPNRSSQVVVPALRILGIGGLLGTDHDGKPVQNISADERLRQEQLRANARTVTVAVPEAL 230

Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
              L+ A     L L +RS  + N  +   ++        +
Sbjct: 231 VSRLMLASQTGVLRLAVRSADEGNLQNYWSAEPGSSDVAER 271


>gi|85711967|ref|ZP_01043021.1| Flp pilus assembly protein CpaB [Idiomarina baltica OS145]
 gi|85694153|gb|EAQ32097.1| Flp pilus assembly protein CpaB [Idiomarina baltica OS145]
          Length = 226

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 85/209 (40%), Gaps = 26/209 (12%)

Query: 1   MKLTR--LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58
           MK  +  ++ +++S V       +    ++    +  +  T        +++   DL  G
Sbjct: 1   MKAKKQWVILLLMSIVLTAFTLWLLRSYLNYETAKRLKAETPPEQA---IVVFNQDLKAG 57

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV----RVPILKGDPIRLEKLV 114
            +V  ++L    +P   V  G++         ++  G ++    +  +  G P+   +  
Sbjct: 58  TLVDASMLSLRQYPTHLVNPGWMT--------EDYVGTILDLPIKRAVTAGSPVEETQFE 109

Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174
                 ++  LP+   A T+ + +     G ++P+D VD+V  + + +       V+ N+
Sbjct: 110 LNYQKRMADRLPENHWAITLPVDLMQLHDGQLQPDDRVDLVSKKPMQDSLS----VVENL 165

Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQ 203
           RV+++     +   +  G + TL ++  Q
Sbjct: 166 RVLSV-----NGTDLGQGMSVTLAVSAKQ 189


>gi|317489752|ref|ZP_07948251.1| SAF domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316911098|gb|EFV32708.1| SAF domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 215

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 16/224 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMR--LVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58
           MK +R   I ++   A  A + A    +         E +     + + V ++K D+A G
Sbjct: 1   MKRSRTTIIGIACGLACAACVFAYAQGVRGEADAARAEALARYGGEQLEVCVAKRDIAAG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             V  + +E   +  + +            +  ++ G      IL G+ +   +     +
Sbjct: 61  ESVDASAVETRLWVADLLPAEAFR------SSGDVVGKKASSTILAGEVLSERRF---RD 111

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
            G    +P+G  A ++      AVGG +     VDV           +  V+ S + V+A
Sbjct: 112 AGSRLDVPEGLTALSVPAKDVQAVGGAVAAGSRVDVYAT-----GGTSTDVLASGVLVLA 166

Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
              +          S  T+ + P   + +VAA    +L   L  
Sbjct: 167 TSASAQESTTDAKVSWITVAVAPESVQEIVAAAQKTELYFTLPG 210


>gi|302387867|ref|YP_003823689.1| SAF domain protein [Clostridium saccharolyticum WM1]
 gi|302198495|gb|ADL06066.1| SAF domain protein [Clostridium saccharolyticum WM1]
          Length = 283

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 83/234 (35%), Gaps = 27/234 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK      IVV  +  + A II   L          +        + ++    ++  G  
Sbjct: 1   MKDLLKNRIVVGLLCIITALIICFGL--------TPMFNNALQSKVELVRVTTEIKKGDE 52

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-- 118
           +T  ++  V     N+    I         +++ G      + KGD I   KL D     
Sbjct: 53  ITAGMITAVETGGYNLPSDVIYK------KEDVIGKFANADLYKGDYILKSKLSDTPQLK 106

Query: 119 GGLSSLLPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
               S L    RA ++ I   ++ + G ++  D V ++       RK  +   L  + +I
Sbjct: 107 NEYLSGLDGTNRAISVTIKSFAAGLSGKLERGDIVSLIASDVGEARKTLILDELQYVEII 166

Query: 178 AIDHNIDSD----------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
           A   +  +D          E   + ST T+ +TP QA+ L   +   KL   L 
Sbjct: 167 ATTDSSGNDRNIQEQPKDNEDTELASTITVLVTPQQARLLAELEQTGKLHAALV 220


>gi|304315801|ref|YP_003850946.1| SAF domain protein [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302777303|gb|ADL67862.1| SAF domain protein [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 213

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 79/227 (34%), Gaps = 32/227 (14%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R+  I +S + A V   +  +                  K I V+ +  D+  G  + 
Sbjct: 5   KKRIFLISISLILAAVLAFLQYQYFH---------KMTESDKKIQVIAAFSDIKAGEKI- 54

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            + L     P+            +P           +V I  G  +    +         
Sbjct: 55  DSKLGVKLIPQSAYVKDMYLLSEKPTG-------YAKVDIAAGSYVMKSMVSKDNV---- 103

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI--- 179
            +L +G R  T+ +++ S++ G IKP D VDV       E+     V+ + + +  I   
Sbjct: 104 PVLKEGMRRVTISVNLESSLAGKIKPGDLVDVGWAPKSDEKGENGAVIANKVEIYDIVNK 163

Query: 180 --------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
                   D N   D   L+ +  TL +TP QA A+   ++   L L
Sbjct: 164 SGGDIKKADKNNQYDTDSLLPAAVTLIVTPEQAIAIKEYEAKGSLFL 210


>gi|317489770|ref|ZP_07948269.1| flp pilus assembly protein CpaB [Eggerthella sp. 1_3_56FAA]
 gi|316911116|gb|EFV32726.1| flp pilus assembly protein CpaB [Eggerthella sp. 1_3_56FAA]
          Length = 306

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 6/233 (2%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           ++ RL  IV + V      +      +       E  T         L++  D+  G  +
Sbjct: 77  RVKRLATIVAASVALTAVSVSYGVWSAAASRAAVEHATAGALPT---LVAAADIRAGDAI 133

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T   +     P        +      +A     G    V I  G  +    +   G   L
Sbjct: 134 TAEAVTVQDVPATYRAASAL-GGEALDAEGLAAGGRAIVDIPAGTQLSSSFVTGMGGDRL 192

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           S+ L  G +A T+ + + + + G ++P D V +V     S  +  +  V    RV+A+  
Sbjct: 193 SAELGAGLQAVTLAVDVETGLAGHVRPYDTVRIVSAEGASAGEAFLETVCERARVVAVGD 252

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
             D+       ++ T+E++P +A A+  AQ   ++SLVL +  D       D 
Sbjct: 253 --DATGVQSGSASVTVEVSPEEADAVREAQFAGRVSLVLVAADDAFEEVGADG 303


>gi|92113781|ref|YP_573709.1| Flp pilus assembly CpaB [Chromohalobacter salexigens DSM 3043]
 gi|91796871|gb|ABE59010.1| Flp pilus assembly CpaB [Chromohalobacter salexigens DSM 3043]
          Length = 342

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 88/260 (33%), Gaps = 20/260 (7%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQ-----TEEVITENPAKFINVLISKGD 54
           M    L  + V  V  AL  G    RL              E  TE P     V+++   
Sbjct: 1   MSPKTLKIVAVGLVIVALALGFTGWRLTQQAMPPSVTESAVESATETPVMRHPVVVATRH 60

Query: 55  LAVGMVVTPNILE--WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK 112
           LA G  +  + +       P   V D            + L+G ++  P+  G+ IR + 
Sbjct: 61  LAAGTRLGADEVTQAATQTPRLAVVDFPNAVPRSFAKREALEGRVLTRPVDAGEAIREDD 120

Query: 113 LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV----MVRSLSERKPTVT 168
                   L+S +P G RA  + +      GG I P D VDV+       S   R+    
Sbjct: 121 FAL--GSVLASQVPAGYRALAIGVDDVVGGGGFIAPGDRVDVLFQAQAASSGDRRETLAR 178

Query: 169 VVLSNIRVIAIDH------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
            +L ++ V+            D +       TA + +T  QA  L+ A+S  +L L +  
Sbjct: 179 RLLDDVLVLGYGDDLRSRAENDDNGGRNGARTAVVAVTDAQAPKLLLAESTGRLRLAVVG 238

Query: 223 IADLNPSSSEDSDVWDVQEE 242
             +       D         
Sbjct: 239 SRERVDRLMADLVTAPDGGG 258


>gi|317403406|gb|EFV83919.1| flp pilus assembly protein CpaB [Achromobacter xylosoxidans C54]
          Length = 279

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 84/200 (42%), Gaps = 12/200 (6%)

Query: 31  HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
             + + +  E+    ++ L++  DL  G  +TP  L     P +      I    +P   
Sbjct: 36  RQRVDTLAGEHREAMVSRLVAARDLPAGTELTPAHLAIRDIPAQWAPAASI----EPRDG 91

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGG---LSSLLPKGKRAATMDISISSAVGGMIK 147
             + G  + + + +GDP+    L    +     L++ L  G+RA  + ++    V  +++
Sbjct: 92  DSVLGTRLGLALAQGDPVLSGCLARADSASPPALAARLDPGQRALQVPVADLGTVADLLR 151

Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL 207
             D VD+ +      R+   T +L  +RV+A+             +  TL  TP QA   
Sbjct: 152 VGDLVDIYVSFPHRGRE-VTTPLLQGVRVLAV----PDAGGGTGPAQVTLAATPNQAMRY 206

Query: 208 VAAQSVAKLSLVLRSIADLN 227
           +AA+    L+ ++R+ AD  
Sbjct: 207 LAARRAGTLTGLVRNRADTA 226


>gi|258515698|ref|YP_003191920.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779403|gb|ACV63297.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM
           771]
          Length = 247

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 91/243 (37%), Gaps = 29/243 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K +    + ++ + A+ AG + M+ +  +               + V+++K ++     +
Sbjct: 6   KKSSSYLLFITLIAAVAAGFLGMQTIRKYTA------------VLPVVVAKVEIPAYTPI 53

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T    +      EN+    I     PN+ Q L G + R  I  G P+  + L   G G L
Sbjct: 54  TEENEK-EMLAVENIPKAAIKQGMFPNS-QNLIGKVTRTVIPAGYPVSKDFLAIEGPGSL 111

Query: 122 -----SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSN 173
                S       RA  + +   +A+ G I P D VDVV    L       P    +   
Sbjct: 112 LTTQISQFKDPKLRATPVTVQGVNALDGKIMPGDRVDVVGNMKLPMGGLQQPVSQTIGVQ 171

Query: 174 IRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA-DLNPSSSE 232
           + VIA+             +   L LTP QA+ +  A++   + L L     D N + + 
Sbjct: 172 VPVIAV------TGEPNKPTGVILGLTPQQAQDVGFAETAGTIKLSLNPYQPDTNAARTT 225

Query: 233 DSD 235
            + 
Sbjct: 226 PTT 228


>gi|283778868|ref|YP_003369623.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068]
 gi|283437321|gb|ADB15763.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068]
          Length = 330

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 96/262 (36%), Gaps = 21/262 (8%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN------PAKFINVLISKGDLA 56
              +   V++ V  LVA  I  + +    V  + V          P   I ++I+K +L 
Sbjct: 6   PATVTFGVMAIVLGLVAAYIVRQSLQKPPVVAKVVAPVPPAPAPIPDPGIRIVIAKHNLP 65

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
              +VT + +E V  P+      F              G +    +  G  +R E L+  
Sbjct: 66  KHTLVTADDVEVVFVPKT-----FPKLETIMKGPATAQGRITNRALPAGQVMREEYLLGI 120

Query: 117 GNG--GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---SERKPTVTVVL 171
           G G   L+  +P G RA T++     A G  +   D VD+ M          +     ++
Sbjct: 121 GEGLPPLAERIPAGYRAVTIEAMNVDAGGKRLSEGDLVDISMTVEGTHPDLGEVLTRTLM 180

Query: 172 SNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
            ++ V+              ++   G + T+ + P  A  L+ AQ    LS+ L S A+ 
Sbjct: 181 KDVMVVDAAAGNPIVLDKRRDQPRSGDSITVAVLPADANKLMVAQKTGVLSVSLCSAAEA 240

Query: 227 NPSSSEDSDVWDVQEEGKEIQI 248
               + DS         KE+ +
Sbjct: 241 PADDTVDSITRRQLLGLKEVPV 262


>gi|325288260|ref|YP_004264441.1| Flp pilus assembly protein CpaB [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963661|gb|ADY54440.1| Flp pilus assembly protein CpaB [Syntrophobotulus glycolicus DSM
           8271]
          Length = 274

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 81/217 (37%), Gaps = 19/217 (8%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V G+I + L          +  ++ ++   ++    ++  G  +T + ++ V      + 
Sbjct: 9   VVGVICILLSLLICFGVTPLFNKSVSQKTEIVRVVKEIKAGDEITKDTVQTVEVGGFGLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           D  I           + G   +  +  GD I   KL D      + L  L   K+A ++ 
Sbjct: 69  DNVIRQSEM------VIGKYAKSDLSIGDYILNTKLSDTPAAENAYLYNLDGTKQAMSVT 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184
           I   ++ + G ++  D V V+      +    +   L  + VI++               
Sbjct: 123 IKSFANGLSGKLQSGDIVSVIAADHKKQGSTVIPAELKYVEVISVTASSGYDANTGEAKS 182

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
             +   + ST TL ++P Q+K L   ++  KL L L 
Sbjct: 183 EKDERELPSTVTLLVSPEQSKVLAELEADGKLHLALV 219


>gi|160897516|ref|YP_001563098.1| Flp pilus assembly protein CpaB [Delftia acidovorans SPH-1]
 gi|160363100|gb|ABX34713.1| Flp pilus assembly protein CpaB [Delftia acidovorans SPH-1]
          Length = 363

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 89/274 (32%), Gaps = 55/274 (20%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV--- 57
           M LT+++   +    A+V   +A  L S       +      A+     + +  + V   
Sbjct: 16  MNLTKILA-GLLVGLAIVLAGLAWLLGSQPARPVAQPSPAASAQPAPEPVPQHAVVVVAQ 74

Query: 58  ----GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
               G  +    ++    P                A  ++ G    + +  G P+  ++L
Sbjct: 75  AIAAGQRIGSEDVKLAQLPAPV--------PGSFAATDDVLGRTTLMALTPGTPLFEQQL 126

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTV 169
           +     GL+  L  G+RA  + I    A G  ++P D VDV         +        +
Sbjct: 127 L----SGLALQLEPGQRALAIAIREQMAAGHHVRPGDFVDVYFTLDGKSDQAPVDAQTRL 182

Query: 170 VLSNIRVIAIDHNI-------------------------------DSDERVLVGSTATLE 198
           +L+  RV+A                                     + +R     +A L 
Sbjct: 183 LLARSRVLAYGSGSVERPPMPAVQRQAQQDKESAGSSLRRASAADQTGQRPENVQSAVLA 242

Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           +     + L  A+   +L+L LR+  DL+    +
Sbjct: 243 VPLDDVERLTLAEKFGQLTLALRNPDDLSVPDPK 276


>gi|330953052|gb|EGH53312.1| Flp pilus assembly protein CpaB [Pseudomonas syringae Cit 7]
          Length = 319

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 89/282 (31%), Gaps = 48/282 (17%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVIT-----------------ENP 42
           M     + + V  +  AL+AG + + +          +                      
Sbjct: 1   MSSRITLVLAVLFLLGALIAGYLGIAVSKQAEAPAVVIPPNGPVTTVTTIQTPPTPPVED 60

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           A   NV+    D+     +T + L       +    G         A+ ++ G      +
Sbjct: 61  AVRHNVVGLARDVPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +          G L+ ++   +RA  + +   +   G + P D+VDV++      
Sbjct: 113 TAGSWLTESSF--DTGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 170

Query: 163 RKP--TVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202
             P  +  VV+  +R++ +                  D  +  +++ +   T T+ +   
Sbjct: 171 SNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPQA 230

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
               L+ A     L L +RS  + N      +D    +   +
Sbjct: 231 LVARLMLASQSGVLRLAVRSADEGNLQDYWANDAGGPEAAER 272


>gi|257790321|ref|YP_003180927.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|325830034|ref|ZP_08163491.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1]
 gi|257474218|gb|ACV54538.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|325487501|gb|EGC89939.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1]
          Length = 306

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 88/233 (37%), Gaps = 6/233 (2%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           ++ RL  IV + V      +      +       E  T         L++  D+  G  +
Sbjct: 77  RVKRLATIVAASVALTAVSVSYGVWSAAASRAAVEHATAGALPT---LVAAADIRAGDAI 133

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T   +     P        +      +A     G    V I  G  +    +   G   L
Sbjct: 134 TAEAVTVQDVPATYRAASAL-GGEALDAEGLAAGGRAIVDIPAGTQLSSSFVTGMGGDRL 192

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           S+ L  G +A T+ + + + + G ++P D V +V     S  +  +  V    RV+A+  
Sbjct: 193 SAELGAGLQAVTLAVDVETGLAGHVRPYDTVRIVSAEGASAGEAFLETVCERARVVAVGD 252

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           +  S +     ++ T+E++P +A A+  AQ   ++SLVL +  D       D 
Sbjct: 253 DATSVQS--GSASVTVEVSPEEADAVREAQFAGRVSLVLVAADDAFEEVGADG 303


>gi|258514750|ref|YP_003190972.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778455|gb|ACV62349.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM
           771]
          Length = 286

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 87/238 (36%), Gaps = 31/238 (13%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           V GV  +V  +I    ++P   Q+         +   ++    D+  G  +T ++++ V 
Sbjct: 9   VLGVICIVLALIICFGLTPLFNQSVS-------QKAQIIRVVKDIKAGDAITKDMVQTVE 61

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128
               N+ +  I         +   G      +  GD I   KL D      + L  L   
Sbjct: 62  VGGYNLPEDVIKQ------QEAALGKYAVADLSPGDYILTAKLSDTPASENAYLYNLNGD 115

Query: 129 KRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179
           K+A ++ I + +  + G +   D V V+      +    +   L+ + VI +        
Sbjct: 116 KQAISVSIKNFAGGLSGKLISGDIVSVIAPDYKKQGMTVIPPELTYVEVIGVTASTGYDT 175

Query: 180 -------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
                  D +   D    + +T TL ++P Q+K L   +S  KL L L        ++
Sbjct: 176 DQQDTGTDSSAKDDSEKQLPATVTLLVSPEQSKILAELESDGKLHLSLVYRGSKESAA 233


>gi|54309659|ref|YP_130679.1| hypothetical protein PBPRA2495 [Photobacterium profundum SS9]
 gi|46914097|emb|CAG20877.1| Hypothetical protein PBPRA2495 [Photobacterium profundum SS9]
          Length = 284

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 97/278 (34%), Gaps = 36/278 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    +  I    V   + G +A  L+S     +  V  E   K+I V  +   LA G  
Sbjct: 1   MNSKIIFVIAFLAVLTGLYG-MADTLLSTTDTASPPVTEEKEIKYITVWRATSALARGQT 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           ++P+ L      EE      I+     N        L+ + + +G  +  E     G  G
Sbjct: 60  LSPSSLTREQLTEEAALSLGINSDVTLNFEPT---TLMNMDVKQGALVFPELQTSPGQAG 116

Query: 121 LSSLLPKG-KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167
             +L+ +G      + I+  + +   I+P D++D++ V S                    
Sbjct: 117 YLNLITRGDMTLYPLTIASKNLIDNYIQPGDYIDIMAVSSPRTNLSNTTSTLENFEGVRA 176

Query: 168 TVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPMQAKALVA 209
           ++++  IRV+++  +    E+                      ST  +E+ P     L  
Sbjct: 177 SLLMRRIRVMSVGQSNTLAEKADQRATITSTIRPKVNISNENESTVVIEVNPDDLAKLSL 236

Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           AQ    + +  RS        ++ SDV        E++
Sbjct: 237 AQRTMYIEI-YRSQHYRQTPDADVSDVIKNYTGIVELR 273


>gi|228982437|ref|ZP_04142696.1| hypothetical protein bthur0002_55700 [Bacillus thuringiensis Bt407]
 gi|228776620|gb|EEM24928.1| hypothetical protein bthur0002_55700 [Bacillus thuringiensis Bt407]
          Length = 267

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 84/267 (31%), Gaps = 54/267 (20%)

Query: 1   MKLTRL-MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK  ++ + I   G   L AG                  T+   +   V     D+    
Sbjct: 1   MKTKQVAITIAQMGAVILFAGGFYYF-------------TQKQMEPTTVWQFNRDIPANT 47

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118
            +T   L     P + V  GF        + +++ G      ++ G+    +KLVD+ N 
Sbjct: 48  QITEGDLVKTTIPAQAVTKGF------ALSPKDIVGKYNNSKLVTGEYALKQKLVDKKNI 101

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVL 171
               S+     R  ++ I+    +GG +K  D VD+V V    +               L
Sbjct: 102 DPFESMDLTKYRKISLPITYIDGLGGNVKRGDKVDLVFVGEGEKAGEGSGKGFKYSKAFL 161

Query: 172 SNIRVIAI-------------------------DHNIDSDERVLVGSTATLELTPMQAKA 206
            +I V  +                           +I S       ST TL +T  QA+ 
Sbjct: 162 QDILVYNVTTDDGFRYTDRSEGVKGDEAGDMQDGKDIQSGGEGGKLSTVTLAVTLDQAEQ 221

Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSED 233
           + A      + +V R   D     +  
Sbjct: 222 ISARLKSGNIRIVGR-FDDSQNYDTAG 247


>gi|188592031|ref|YP_001796629.1| flp pilus assembly cpab [Cupriavidus taiwanensis LMG 19424]
 gi|170938405|emb|CAP63392.1| putative Flp pilus assembly CpaB [Cupriavidus taiwanensis LMG
           19424]
          Length = 316

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 90/243 (37%), Gaps = 27/243 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   ++  + +  +   V   +    V     Q     +        V+++      G  
Sbjct: 1   MTSKQIRLLAIVLLGLAVLLALLAWQVGRQPAQ--PAASAGARPMHAVVVTTRPAEAGKP 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    L+    P +    G   DV +      + G +  V +    P+   +L+     G
Sbjct: 59  LDAEALKVEMLPID--PAGAYRDVAR------VTGQVPLVALGANVPVLESQLL----SG 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVI 177
           L++ +P+G+RA  + +     VG  ++P D+VDV +V    +++       ++LS +RV+
Sbjct: 107 LAAQVPEGERAVAVSVDEVIGVGNQVQPGDYVDVFLVLRRDQQEIPDSQARMLLSRLRVL 166

Query: 178 AIDHNIDSD----------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           A      +            R     TA L +   Q   L  AQ   +L L LR+  D  
Sbjct: 167 AYGVASVNRPQAVKPEQMMARQEGAKTAVLSVPLEQVSRLAMAQHSGRLMLALRNPQDEA 226

Query: 228 PSS 230
             S
Sbjct: 227 MPS 229


>gi|262275470|ref|ZP_06053280.1| flp pilus assembly protein RcpC/CpaB [Grimontia hollisae CIP
           101886]
 gi|262220715|gb|EEY72030.1| flp pilus assembly protein RcpC/CpaB [Grimontia hollisae CIP
           101886]
          Length = 263

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 92/266 (34%), Gaps = 24/266 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M       I    +   V G+                I+      I V   K  +  G +
Sbjct: 1   MSQRVFFLIAFLSIAGGVLGLSGFFQSKNTTASNISNIS------IKVAQLKTPVTRGDI 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           VT + + +    E    +  I      +    + G++ +  +   D + +   +   +  
Sbjct: 55  VTGDNIRYFRLRETEALEYGIVSDVVISP---VSGMVAKKDLTTSDYLSMSDFILPSDPA 111

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------------RKP 165
            L +++       ++ I     +G  I   D VDV+++ S  +              R  
Sbjct: 112 YLDTVIDDHMTPYSLTIERKDFIGSGISVGDRVDVIILTSDEQNIGDTSRSNHIESFRSL 171

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +V+ +L N+RV+AID   + +         T+EL   Q   +V A+ +  + ++  S A 
Sbjct: 172 SVSPLLRNVRVLAIDDGKEKENEKEEILPLTIELNRDQVAKMVIARRIGIIEVIKSSNAS 231

Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKA 251
                   +D  DV    K +  I+ 
Sbjct: 232 QQRLLGMTADTHDVLPNFKSVTEIRG 257


>gi|90412177|ref|ZP_01220183.1| hypothetical protein P3TCK_27809 [Photobacterium profundum 3TCK]
 gi|90326901|gb|EAS43286.1| hypothetical protein P3TCK_27809 [Photobacterium profundum 3TCK]
          Length = 284

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 36/278 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    +  I    V   + G +A  L+S     +     E   K+I V  +   LA G  
Sbjct: 1   MNSKIIFVIAFLAVLTGLYG-MADTLLSTTDTASTSATEEKEIKYITVWRATSPLARGQA 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           ++P+ L      EE      I+              L+ + + +G  +  E     G  G
Sbjct: 60  LSPSSLTREQLTEEAALSLGINSDVTLKFEPT---TLMNMDVKQGALVFPELQTSPGEAG 116

Query: 121 LSSLLPKG-KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167
             +L+ +G      + I+  + +   I+P D++D++ V S                    
Sbjct: 117 YLNLITRGDMTLYPLTIASKNLIDNYIQPGDYIDIMAVSSPRTNLSNTTSTLENFEGVRA 176

Query: 168 TVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPMQAKALVA 209
           ++++  IRV+++  +    E+                      ST  +E+ P     L  
Sbjct: 177 SLLMQRIRVMSVGQSNTLAEKSGQRSTTTSTIRPKVNISNENESTVVIEVNPDDLAKLSL 236

Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           AQ    + +  RS        ++ SDV        E++
Sbjct: 237 AQRTMYIEI-YRSQHYRQTPDADVSDVIKNYTGIVELR 273


>gi|73539230|ref|YP_299597.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134]
 gi|72122567|gb|AAZ64753.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134]
          Length = 318

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 25/218 (11%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
                  +   V     A    V+++   +  G  +  + L+    P E    G   +V 
Sbjct: 25  WQVGRQPEPPPVSRAAAAVPHPVVVTARAVEAGKPLPADALKVEMLPIE--PTGAYAEV- 81

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
                  + G +  V I    P+   +L+     GL++ +P+G+RA  + +     VG  
Sbjct: 82  -----TRVAGQVPLVNIGANVPVLESQLL----AGLAAQIPEGERAVAIAVDEVIGVGNQ 132

Query: 146 IKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSD----------ERVLVG 192
           ++P D+VDV +V     ++       ++L  +RV+A      ++           R    
Sbjct: 133 VQPGDYVDVFLVLRRDSQEIGASQARMLLPRLRVLAYGSGAVNEPQKQQPEQMMTRREGA 192

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
            TA L +   Q   L  AQ   +L + LR+  D    S
Sbjct: 193 KTAVLSVPLEQVSKLAMAQHSGRLLMALRNPHDELIPS 230


>gi|104779899|ref|YP_606397.1| Flp pilus assembly protein CpaB [Pseudomonas entomophila L48]
 gi|95108886|emb|CAK13582.1| putative Flp pilus assembly protein CpaB [Pseudomonas entomophila
           L48]
          Length = 316

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 74/249 (29%), Gaps = 32/249 (12%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88
           P                  +++ +  +   + +T + +       + V  G         
Sbjct: 45  PAPTPVAVPAQPPEPPRSPIVVLRKAVPANVPLTEDDVLVERL--QVVPAGAFQQ----- 97

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148
            + ++ G     P+  G  +       +  G L+ ++   +RA  + +       G ++P
Sbjct: 98  -LDQVLGRSSSRPLAAGSWLDDSSF--QAGGPLARMIRANERAVAVAVDDVIGAAGQLRP 154

Query: 149 NDHVDVVMVRSLSERKPTV--TVVLSNIRVIAIDHNIDSDERVLVG-------------- 192
            D VDV++        P     VVL  +RV+++DH                         
Sbjct: 155 GDFVDVLLFLREENNNPQSSAQVVLPALRVLSVDHQTGLANDGRPAQTAEEQKARRDQQA 214

Query: 193 ------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI 246
                  T  L +    A  L+ A     L L +RS  +   +     +    Q      
Sbjct: 215 LNSNATRTVGLAVPEALASRLMLAAQAGTLRLAVRSADEQLLARYWSGEDASPQLAAANR 274

Query: 247 QIIKAGVIV 255
            + +   + 
Sbjct: 275 DLYRFSQLS 283


>gi|297157611|gb|ADI07323.1| hypothetical protein SBI_04202 [Streptomyces bingchenggensis BCW-1]
          Length = 234

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 87/251 (34%), Gaps = 26/251 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  +  L AG     ++S         +             K ++     
Sbjct: 1   MNSRQRRGVILLVLSVLCAGGAFAGVLS-----VIRDVESKVGPETTAYKLKSNVPAYQA 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +     E ++ P+  +    + D      + ++ G +   P+ KG  ++ + +V+R    
Sbjct: 56  LDAGQFEKISMPKRWLPSTAVTD------LADVRGKIAVTPLRKGSLLQDDMIVERP--- 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIA 178
               L  G++   + I  ++ V G I P   V++        ++  P   ++++   VI 
Sbjct: 107 ---ALKPGQQEIAIMIDAATGVAGKINPGSKVNIYATFEGRSQRDDPVSKIIVAGAEVID 163

Query: 179 IDHNI------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSS 231
           +          D   R+      T  L    A+ +  A+S A  + L L +    +  S 
Sbjct: 164 VGKLTALEPDQDDTRRLDKAVPITFALDTGDAQRVAYAESFATHVRLALVAPGGDDTVSP 223

Query: 232 EDSDVWDVQEE 242
            D       + 
Sbjct: 224 RDRTYTLDGDR 234


>gi|119961714|ref|YP_948564.1| Flp pilus assembly protein [Arthrobacter aurescens TC1]
 gi|119948573|gb|ABM07484.1| putative Flp pilus assembly protein CpaB family [Arthrobacter
           aurescens TC1]
          Length = 269

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 27/221 (12%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           + V+ +  + AGI   +L            T    + ++V+++  DL  G  +T + L  
Sbjct: 71  LAVALLLCVAAGIAVHQL------------TPASEQRVSVVVAARDLPTGTSLTESDLTS 118

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128
           V  P +    G +      N++  L G  +  P+ KG       L+     GL +  P G
Sbjct: 119 VGVPPDLALSGAL------NSIGTLVGRQLASPLGKGQIPTESSLLGP---GLLTGAPVG 169

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAI-DHNIDSD 186
             A  + ++  S++  ++ P   V VV+  + S +      V+   + V+          
Sbjct: 170 TAAVPLRMADPSSIQ-LLSPGQLVTVVLTAAGSYDESRQSQVLAGPVPVLWTSAQGGKPG 228

Query: 187 ERVLVGST---ATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           E +  G T     +   P QA+ L  A +  KL  VL S +
Sbjct: 229 EWLGTGDTDGLVVVAADPQQAEKLAGASTQGKLFFVLVSPS 269


>gi|33593510|ref|NP_881154.1| putative secretory protein [Bordetella pertussis Tohama I]
 gi|33572866|emb|CAE42801.1| putative secretory protein [Bordetella pertussis Tohama I]
 gi|332382918|gb|AEE67765.1| putative secretory protein [Bordetella pertussis CS]
          Length = 281

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 98/249 (39%), Gaps = 14/249 (5%)

Query: 1   MKLTRLMGIVVSG---VFALVAG-IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLA 56
           M+  R    + +     FALVAG + A         +  ++  +     +  L++  DL 
Sbjct: 1   MRAARWRQGLRALGGYAFALVAGSLAAWAAREHIQRRVHDIEQQARVPMVASLVAALDLE 60

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G  +   ++     P+  +  G +     P+    LDG ++R P+  G+ ++   L   
Sbjct: 61  AGTPLHDELVAVRDMPQAWLPAGAL----LPDEAARLDGAVLRAPVKAGEALQAALLSYP 116

Query: 117 GNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
                L+  L  G+ A T+ +     +    +P D VD+ +  +  +R+     +L+  +
Sbjct: 117 EQTPALTEQLEAGQGAITLPLQELPGLSAAARPGDLVDLYVSFTHRQRQ-LTMPLLAGSK 175

Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           V+A+D      +     ST TL  +  +   LVAA+    L+ VLR         +    
Sbjct: 176 VLALD----PADAQGGASTITLRASAREVARLVAARQEGTLTAVLRRAGAPAQGPARAFA 231

Query: 236 VWDVQEEGK 244
               +E G 
Sbjct: 232 APSAREAGD 240


>gi|59711119|ref|YP_203895.1| CpaB family Flp pilus assembly protein [Vibrio fischeri ES114]
 gi|59479220|gb|AAW85007.1| Flp pilus assembly protein CpaB family [Vibrio fischeri ES114]
          Length = 270

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 92/234 (39%), Gaps = 19/234 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++ + V  +   + G+           +  +   + P   + V I+K DL  G  
Sbjct: 1   MKSKIILVLAVIAISIGLYGMSQTSTTESPITEKVQEFDKRPEATVMVWIAKKDLMFGSP 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           V    LE     +       I    + N  ++L   LV+  IL+GD +  + L+     G
Sbjct: 61  VQRTDLEVQRISQTQADRFGIIHDVKFNFNKKL---LVKKDILQGDIVTSDMLLSPGQEG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----------KPTVT 168
            L+ ++ +GK    +++S  + +GG I   D VD+  + S  +               + 
Sbjct: 118 YLNLVISEGKVPFNLEVSNDAILGGAISVGDVVDIASISSSEQNLSNDASISNVQSLKMA 177

Query: 169 VVLSNIRVIAIDHNIDS----DERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
            +L+ I V+ I           +     +   LE++  +   LV AQ +A+L +
Sbjct: 178 PLLTQIMVLDIIQQEKPVRLNSKSTKTVTNLVLEVSNRELAKLVIAQRIAELEV 231


>gi|197335888|ref|YP_002155268.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11]
 gi|197317378|gb|ACH66825.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11]
          Length = 270

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 19/234 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++ + V  +   + G+           +  +   + P   + V I+K DL  G +
Sbjct: 1   MKSKIILVLAVIAISIGLYGMSQTSTTESPITEKVQEFDKLPEPTVMVWIAKKDLMFGSL 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           V    LE     +       I    + N  ++L   L++  IL+GD +  + ++     G
Sbjct: 61  VQRTDLEVQRISQTQADRFGIAHDVKFNFNKKL---LIKKDILQGDIVTSDMVLSPGQEG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----------KPTVT 168
            L+ ++ +GK    +++S  + +GG I   D VD+  + S  +               + 
Sbjct: 118 YLNLVISEGKVPFNLEVSNDAILGGAISVGDVVDIASISSSEQNLSNDASISNVQSLKMA 177

Query: 169 VVLSNIRVIAIDHNIDS----DERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
            +L+ I V+ I           +     +T  LE++  +   LV AQ +A+L +
Sbjct: 178 PLLTQIMVLDIIQQEKPVRLNSKSTKTVTTLVLEVSNRELAKLVIAQRIAELEV 231


>gi|33601079|ref|NP_888639.1| hypothetical protein BB2096 [Bordetella bronchiseptica RB50]
 gi|33575514|emb|CAE32592.1| putative exported protein [Bordetella bronchiseptica RB50]
          Length = 277

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 14/225 (6%)

Query: 1   MKLTRLMGIVVSG---VFALVAG-IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLA 56
           M+  R    + +     FALVAG + A         +  ++  +     +  L++  DL 
Sbjct: 1   MRAARWRQGLRALGGYAFALVAGSLAAWAAREHIQRRVHDIEQQARVPMVASLVAARDLE 60

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G  +   ++     P+  +  G +     P+    LDG ++R P+  G+ ++   L   
Sbjct: 61  AGTPLHDELVAVRDMPQAWLPAGAL----PPDEAARLDGAVLRAPVKAGEALQAALLSYP 116

Query: 117 GNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
                L+  L  G+ A T+ +     +    +P D VD+ +  +  +R+     +L+  +
Sbjct: 117 EQTPALTEQLEAGQGAITLPLQELPGLSAAARPGDLVDLYVSFTHRQRQ-LTMPLLAGSK 175

Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           V+A+D      +     ST TL  +  +   LVAA+    L+ VL
Sbjct: 176 VLALD----PADAQGGASTITLRASAREVARLVAARQEGTLTAVL 216


>gi|256785519|ref|ZP_05523950.1| hypothetical protein SlivT_13601 [Streptomyces lividans TK24]
 gi|289769415|ref|ZP_06528793.1| flp pilus assembly protein CpaB [Streptomyces lividans TK24]
 gi|289699614|gb|EFD67043.1| flp pilus assembly protein CpaB [Streptomyces lividans TK24]
          Length = 235

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 85/249 (34%), Gaps = 30/249 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              ++ +++S + AL A    + +++         +       +     K D+     + 
Sbjct: 6   RRGIILLILSVLCALGAFAGVLSVIND--------VKSKVGPEVTAYRVKSDIEPYTELG 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
               E V  PE  + +  + D+ +      + G +    +  G  ++ + +VD       
Sbjct: 58  ATQFEKVEMPERWLSENAVTDLSR------VRGKIAVTTLKAGSLLQTDMIVDTP----- 106

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIAID 180
             L  G++   + I  ++ V G I P   V+V                ++++  +VI + 
Sbjct: 107 -ALRPGQQEVAIMIDAATGVAGKITPGSTVNVYATFEGPREGDPDQSKIIVTGAKVIDVG 165

Query: 181 HNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSE 232
                       D         T  L+ + A+ +  A+S A ++ L L +         +
Sbjct: 166 ELTSLEPDEDSRDREPTDAVPITFALSTIDAQRITYAESFARRVRLALVAPGGDTTVPDK 225

Query: 233 DSDVWDVQE 241
           D      ++
Sbjct: 226 DRTYELAKD 234


>gi|320008849|gb|ADW03699.1| Flp pilus assembly protein CpaB [Streptomyces flavogriseus ATCC
           33331]
          Length = 234

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 91/250 (36%), Gaps = 26/250 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  +  L A      ++S         +       ++    K ++A    
Sbjct: 1   MNSRQRRGVILLLLSVLCAFAAFAGVLSVISD-----VNSKVGPEVDAYRLKDNVAPYTA 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           ++    E V+ P+  + +  + ++       E+DG +    +  G  ++ + +V      
Sbjct: 56  LSAKQFEKVSMPKRWLSENAVTEID------EVDGKIAVTELRAGSLMQSDMMVS----- 104

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRVIA 178
            S  L  G++   + I  ++ V G I+PND V++            P   +++SN +V+ 
Sbjct: 105 -SPELRPGEQEIAIMIDAATGVAGKIRPNDKVNIYATFAAERDGEVPQSKIIVSNAKVLD 163

Query: 179 IDHNI------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSS 231
           +          D   +       T  L  +  + +  A+S A+ + L L +         
Sbjct: 164 VGELTALEPRKDDRNQAAEAVPITFALDTLDTQRVAYAESFAQHVRLALIAPGSDGVVRP 223

Query: 232 EDSDVWDVQE 241
            D      ++
Sbjct: 224 GDRTYTLDKD 233


>gi|266625537|ref|ZP_06118472.1| putative Flp pilus assembly protein CpaB [Clostridium hathewayi DSM
           13479]
 gi|288862557|gb|EFC94855.1| putative Flp pilus assembly protein CpaB [Clostridium hathewayi DSM
           13479]
          Length = 231

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 84/221 (38%), Gaps = 19/221 (8%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K I ++    D+ +G  VT +++  V     N+    + +       + + G      ++
Sbjct: 1   KKIEIVRVVKDIKIGDKVTGDMVRSVEVGSLNLPSEVMKN------KENVIGKYASADMV 54

Query: 104 KGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSL 160
            GD I   K+ D      + L  L   K+A ++ +   ++ + G +K  D V V+     
Sbjct: 55  PGDYIINSKVADEPAAENAYLYNLSGEKQAISVSVKSFATGLSGKLKSGDIVSVIAPDYQ 114

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSD--------ERVLVGSTATLELTPMQAKALVAAQS 212
            + +  +   L  + VIA+      D        E   + ST TL  TP Q++ L   + 
Sbjct: 115 KQGETVIPPELKYVEVIAVTAGSGYDANTGEEDPEEKELPSTVTLLATPEQSRILAMMEK 174

Query: 213 VAKLSLVL--RSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
              L + L  R   +       + +    +    E + +++
Sbjct: 175 DGNLHISLVYRGTKENAAKFIAEQEQALQELYPPETEAVES 215


>gi|313902408|ref|ZP_07835811.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM
           13965]
 gi|313467339|gb|EFR62850.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM
           13965]
          Length = 302

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 81/216 (37%), Gaps = 23/216 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M       + V+ +    A +I +                +    + V+++   L   + 
Sbjct: 4   MSWRAAASLGVALLAGTTAYLIYL----------------DATASLPVVVATRPLRAPLN 47

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           V  +++  V  P   V    + D  +      + G ++R  +  G+P+    +V     G
Sbjct: 48  VEADMVSVVPLPAAAVHPRAVGDPSR------VIGHVLRRDVEAGEPLLEADVVAGEGAG 101

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           LS+ L + ++A  +   +   +GG ++P D VDV+ V            +L N+ V+ + 
Sbjct: 102 LSAFLEEHQQAFFIPTRLEQGLGGAVEPGDRVDVIFVG-GEGPGAVARTLLENLPVLQVR 160

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
                           + +TP +A+ L  A +  ++
Sbjct: 161 DEEGRRYEDGRPLGVLVGVTPAEAERLAYALTYGRV 196


>gi|257791505|ref|YP_003182111.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|257475402|gb|ACV55722.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
          Length = 243

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 18/197 (9%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
            +  I        + +I+   ++ G  ++P++L+ V  P   +    I D       Q+L
Sbjct: 62  VQSEIATLRENTSSTVITTTAISQGTTISPDMLKVVDIPASFLNSEAIAD------TQDL 115

Query: 94  DGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
            G +    I     +    L        L+S L  G  A ++ +   S + G+IK ND+V
Sbjct: 116 VGKIALYNIAANSQVTSGMLSAMDNAATLASSLQAGNVAISIAVDSESGLSGLIKQNDYV 175

Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212
           D++             V++ N+RV A+D N+     V   +T TLE+ P QA A+  AQS
Sbjct: 176 DILGNG---------EVIVQNVRVAALDSNLS--GSVSQYATVTLEVAPTQATAIQEAQS 224

Query: 213 VAKLSLVLRSIADLNPS 229
              L  VLR   +    
Sbjct: 225 ENPLRFVLRPAVERTAP 241


>gi|116694139|ref|YP_728350.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16]
 gi|113528638|emb|CAJ94985.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16]
          Length = 317

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 83/218 (38%), Gaps = 25/218 (11%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
                        + +      V+++   +  G  +    L+    P +    G   +V 
Sbjct: 25  WQVGRQPAQAPAASTSAKPLHAVVVTTQAVEAGKPLAAEALKVEMLPID--PTGAYSEVA 82

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
           +      + G +  V +    P+   +L+     GL++ + +G+RA  + +     VG  
Sbjct: 83  R------VTGQVPLVALGANVPVLESQLL----AGLATQVREGERAVAVSVDEVIGVGNQ 132

Query: 146 IKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAID-------HNIDSDE---RVLVG 192
           ++P D+VDV +V    ++   +    ++LS +RV+A          N   ++   R    
Sbjct: 133 VQPGDYVDVFLVLRRDQQEIPESQARMLLSRLRVLAYGVASVNRPQNAKPEQMMARQEGA 192

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
            TA L +   Q   L  AQ   +L L LR+  D    S
Sbjct: 193 KTAVLSVPLEQVSRLAMAQQSGRLLLALRNPQDEAMPS 230


>gi|254487761|ref|ZP_05100966.1| Flp pilus assembly protein CpaB [Roseobacter sp. GAI101]
 gi|214044630|gb|EEB85268.1| Flp pilus assembly protein CpaB [Roseobacter sp. GAI101]
          Length = 198

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 9/171 (5%)

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
              E++G +V+V     + I   K+     + GL+S L +G RA T+ + +SS V G ++
Sbjct: 2   PQGEVNGDVVQVVARSFEAILAAKVTAPGEDTGLTSRLARGTRAFTIKVDVSSGVSGFLR 61

Query: 148 PNDHVDVVMVRS-------LSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLEL 199
           P D VDV            L        ++ + +++IAID +   +     +  T T+ +
Sbjct: 62  PGDRVDVYWTGRITVGDSNLRNAGDVTKLIEAGVQLIAIDQSAGGEMNEANIAQTVTVAV 121

Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
            P Q  AL  AQS  KLSL L    D   + + + D   +     E   ++
Sbjct: 122 KPSQVAALAQAQSTGKLSLSLVGADDDTIAGAIEVDQRSLLGITNETVQVE 172


>gi|163856387|ref|YP_001630685.1| putative secreted protein [Bordetella petrii DSM 12804]
 gi|163260115|emb|CAP42416.1| putative secreted protein [Bordetella petrii]
          Length = 281

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 90/244 (36%), Gaps = 12/244 (4%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           LTRL  + V G       + A         +  E+  E     ++ L+   DL  G  + 
Sbjct: 9   LTRLRALGVYGFALAAGLLAAWAAREHIQARVREIEREAEVLAVDKLVVATDLPAGTRLQ 68

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGNGGL 121
              L     P   V  G       P A  ++ G ++   + +GD +             L
Sbjct: 69  AGHLAVRDIPVPWVASGSF----DPEAADQVIGAVLAADLRQGDALLDVHLAPAVAAPAL 124

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           S L+P G+RA T+     +A  G+++  D +D+ +  +    +     ++  +RV+A++ 
Sbjct: 125 SELVPAGRRAVTLPAEEINAAAGLLRAGDLIDLYVSFAHR-GQHLTAPLMQGVRVLAMES 183

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
             D+        + TL+ +   A  LVAA+    L+ +LR   D        S       
Sbjct: 184 GADA------APSITLDASAQDAIKLVAARHGGTLTAMLRHRGDGAAPPVTASGDLAALM 237

Query: 242 EGKE 245
               
Sbjct: 238 GIDA 241


>gi|116052339|ref|YP_792650.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587560|gb|ABJ13575.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 303

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 23/199 (11%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   VL++  DL    V+  + L         V           +  + L G  V V
Sbjct: 51  EKLERKPVLVASRDLPALAVIGKDDLSVERLRTAPV--------GSYDRPEALLGKRVWV 102

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            +  G  +    L     G L+  +   +RA  + +      GG + P D+VDV++    
Sbjct: 103 AVPAGSILSAATL--EPGGPLARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRD 160

Query: 161 SERKPTV---TVVLSNIRVIAID----------HNIDSDERVLVGSTATLELTPMQAKAL 207
                +     +VL  +RV+                + ++      TA L +       L
Sbjct: 161 ERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARL 220

Query: 208 VAAQSVAKLSLVLRSIADL 226
           + A     L L +RS  + 
Sbjct: 221 MLASQAGSLRLAIRSKDEE 239


>gi|317403506|gb|EFV84009.1| flp pilus assembly protein CpaB [Achromobacter xylosoxidans C54]
          Length = 226

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 69/210 (32%), Gaps = 24/210 (11%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVT-PNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
                 E PAK   V+++   +  G  +    +L+   +                ++   
Sbjct: 21  QASAPAEPPAKRYPVVVAAAAIPAGTRIDGARMLKVDQWQVAL--------SGSYSSPAP 72

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           L G   RV I  GDP+    L      GL   L  G+RA  + +      G  I P D V
Sbjct: 73  LQGAYARVDIAAGDPLLPSMLAQ----GLGRQLKPGERAVAIAVDEVVGGGNRIAPGDLV 128

Query: 153 DVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDERVL---------VGSTATLELTP 201
           DV  +       +     ++ S +RV+A                        TA L +  
Sbjct: 129 DVFFLLEKGVEIQAGQARLLQSRVRVLAYGTASVDGPEDKGTLPGPPGQPARTAVLAVPV 188

Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSS 231
            Q   L+ A    +L L LR + D     +
Sbjct: 189 EQVSELLLAGRSGRLQLALRPVGDDGGPDT 218


>gi|297568754|ref|YP_003690098.1| Flp pilus assembly protein CpaB [Desulfurivibrio alkaliphilus AHT2]
 gi|296924669|gb|ADH85479.1| Flp pilus assembly protein CpaB [Desulfurivibrio alkaliphilus AHT2]
          Length = 292

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 77/201 (38%), Gaps = 21/201 (10%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
                 E  A +  ++++   L+ G  +T         P   V           ++++E+
Sbjct: 44  ALAKPEETAADWPRIVVAGQPLSRGEPITAA--AVQLVPARLVPPDSF------SSLEEV 95

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
                 V +  G+P+     +      L+ +L   +RA  + ++ +  VGG + P DHVD
Sbjct: 96  VERRPAVSLQIGEPLTKRHFL--PGSELAHVLDPDERAVAIVVNDAIGVGGFLAPGDHVD 153

Query: 154 VVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDERVLVGS--------TATLELTPM 202
           V++  +  +R+       ++L+  R++A      + +     +        TA L +   
Sbjct: 154 VLLYLAADQRRRQPAQARILLARQRLLAYGQAPAAAKAGTQPARGAGRGSDTAVLAVRTE 213

Query: 203 QAKALVAAQSVAKLSLVLRSI 223
            A  L+ A  V  L L L   
Sbjct: 214 DAPKLLLAAQVGTLHLALHGP 234


>gi|149909548|ref|ZP_01898202.1| tungstate-binding protein precursor [Moritella sp. PE36]
 gi|149807453|gb|EDM67404.1| tungstate-binding protein precursor [Moritella sp. PE36]
          Length = 267

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 101/275 (36%), Gaps = 26/275 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++ I      A+V G+  +   +P   +T+          I V   + D+  G +
Sbjct: 1   MKTKLIIAIAT---LAIVIGLYGLLTEAPPATETQITEIVVEENKIKVWFLRNDVKRGQL 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           V  +       PE       I D    N  +   G +    +     +  E +    +  
Sbjct: 58  VERSDFSIRQLPESEANALGIADESNMNFDK---GSVYNRELTVQSAVFPEYITATNDLE 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------------RKP 165
            +  +L + +    + +     +GG+I    +VDV+ + S                 +  
Sbjct: 115 YVELVLAENRVPFVIKVDPDVIIGGVISHGSYVDVLALASGGSKISFNSDELSQPKFKSI 174

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTAT---LELTPMQAKALVAAQSVAKLSLVLRS 222
           +V+ VL  ++V+ I     S  R     TAT   LELT  Q   L  A+ +A L  V +S
Sbjct: 175 SVSPVLIGVKVLTIQQGAMSGGRNNSDVTATVLVLELTRKQVAKLTVAKRIADLE-VHKS 233

Query: 223 IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
           I   N +    +D  DV  + K I+  +A  I   
Sbjct: 234 IGSYNAADLT-ADAGDVLADYKAIKEFRANKISIN 267


>gi|302553849|ref|ZP_07306191.1| flp pilus assembly protein CpaB [Streptomyces viridochromogenes DSM
           40736]
 gi|302471467|gb|EFL34560.1| flp pilus assembly protein CpaB [Streptomyces viridochromogenes DSM
           40736]
          Length = 235

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 89/249 (35%), Gaps = 30/249 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              ++ +++S V AL A    + ++S         +       +     K ++     + 
Sbjct: 6   RRGVILLLLSVVCALGAFAGVLSVISD--------VKSKVGPEVTAYRLKSEVPPYTTLR 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
               E +  PE  + D  + D      ++E+ G +    +  G  ++ + +V R      
Sbjct: 58  TGQFEKIKMPERWLSDNAVTD------LREIQGKIAVTTLRAGSLLQSDMIVRRP----- 106

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAID 180
             L  G++   + I  ++ V G I P   V+V                ++++N +V+ + 
Sbjct: 107 -ALQPGQQEVAIMIDAATGVAGKITPGASVNVYATFEGAREGDPDQSKIIVTNAKVLDVG 165

Query: 181 -------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSE 232
                     +  ++   G   T  L+ + A+ +  A+S A ++ L L +          
Sbjct: 166 ELTALEPDESNRTQQPTDGVPITFALSALDAQRITYAESFAKRVRLALVAPGSDTTVPER 225

Query: 233 DSDVWDVQE 241
           D      ++
Sbjct: 226 DRTYELAKD 234


>gi|160941850|ref|ZP_02089177.1| hypothetical protein CLOBOL_06746 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435347|gb|EDP13114.1| hypothetical protein CLOBOL_06746 [Clostridium bolteae ATCC
           BAA-613]
          Length = 278

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 85/224 (37%), Gaps = 18/224 (8%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V GI+ + L          +  +  ++  +++  +  +  G  +T + ++ V     N+ 
Sbjct: 9   VLGILCIVLSLAICFLATPLFNQAISEKTDIVRVQKAIKAGDEITKDKVQMVEVGGYNLP 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135
           +  + D      +  + G      +L GD +   K+  +  G  + L  L   K+A ++ 
Sbjct: 69  ENVMKD------LGSVVGAYATADLLPGDYVLYSKISVQPPGADTYLYQLDGTKQAISVT 122

Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVG-- 192
           +   ++ V G ++  D V ++        +  +   L  ++VIA+  +   D     G  
Sbjct: 123 VKSFAAGVSGKLRSGDIVSILAPDYRKMGETVIPQELQYVQVIAVTASTGVDANTAGGDK 182

Query: 193 -------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
                  +T TL  TP+Q K L   ++   L   L        +
Sbjct: 183 EKEKSLPATLTLLATPIQCKVLAELETEGNLHAALVYRGKAETA 226


>gi|160940635|ref|ZP_02087978.1| hypothetical protein CLOBOL_05529 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436370|gb|EDP14137.1| hypothetical protein CLOBOL_05529 [Clostridium bolteae ATCC
           BAA-613]
          Length = 288

 Score = 98.7 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 95/258 (36%), Gaps = 33/258 (12%)

Query: 1   MK-LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M+   R +  ++S + A V   +A+            V+T+  +  + ++     L  G 
Sbjct: 1   MRINNRFIYGIISILLAAVIAFVAI-----------PVVTKKTSSTLEIVRVVNPLERGQ 49

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-- 117
            +T   LE +     N+             ++++ G      ++ GD I   K+      
Sbjct: 50  QITAQDLELIEVGSYNLPASVAIR------LEDVTGTYAAASLMPGDYILPNKVSSSPLS 103

Query: 118 NGGLSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV--LSNI 174
           +      +P G  A ++   ++++A+   ++  D +         E+   V  +  L  +
Sbjct: 104 SDPALYSIPDGMVAISVTTQTLATALSDKLQSGDIIRFYHYNDEHEQLNPVEDIPELRYV 163

Query: 175 RVIAID----------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           +V+++             ++ DE  L  +T T+  +P QA  L   ++   L + L S  
Sbjct: 164 KVLSVTDSQGLDIDYTQPLEEDEEKLQTATITVLASPEQAMLLTRYENEGILHVALISRG 223

Query: 225 DLNPSSSEDSDVWDVQEE 242
           +    +       D+  E
Sbjct: 224 NEALVTELLQRQTDILNE 241


>gi|290957849|ref|YP_003489031.1| hypothetical protein SCAB_33831 [Streptomyces scabiei 87.22]
 gi|260647375|emb|CBG70480.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 238

 Score = 98.7 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 92/254 (36%), Gaps = 30/254 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+V+  + AL A      ++S         +       +     KGD+A    
Sbjct: 1   MNSRQRRGVVLLVLSALCALAAFAGVLS-----VIRDVNAKVGPEVTAYRLKGDIAPYKE 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T +  E ++ PE  +    + D      + E+ G +    + KG  ++ + +VDR    
Sbjct: 56  LTADQFERISMPERWLSGTAVTD------LSEIRGKIAVNQLRKGSLLQSDMIVDRPE-- 107

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---TVTVVLSNIRVI 177
               L  G++   + I  S+ V G I P   V++       +      T  +++++ RVI
Sbjct: 108 ----LEAGQQEIAILIDASTGVAGKINPGSRVNIYATFEEKDSDSKKDTSKLMVTDARVI 163

Query: 178 AID---------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLN 227
            +           + D           T  L    A+ +  A+S A+ + L L    +  
Sbjct: 164 DVGKLTPLESGQSSSDRRRTATEAVPITFALDTADAQRVAFAESFAEHVRLALVGGGEAT 223

Query: 228 PSSSEDSDVWDVQE 241
               +D      ++
Sbjct: 224 VVVPDDRSYTLDED 237


>gi|313106824|ref|ZP_07793036.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
 gi|310879538|gb|EFQ38132.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
          Length = 299

 Score = 98.7 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 23/199 (11%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   VL++  DL    V+  + L         V           +  + L G  V V
Sbjct: 47  EKLERKPVLVASRDLPALAVIGKDDLSVERLRTAPV--------GSYDRPEALLGKRVWV 98

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            +  G  +    L     G L+  +   +RA  + +      GG + P D+VDV++    
Sbjct: 99  AVPAGSILSAATL--EPGGPLARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRD 156

Query: 161 SERKPTV---TVVLSNIRVIAID----------HNIDSDERVLVGSTATLELTPMQAKAL 207
                +     +VL  +RV+                + ++      TA L +       L
Sbjct: 157 ERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARL 216

Query: 208 VAAQSVAKLSLVLRSIADL 226
           + A     L L +RS  + 
Sbjct: 217 MLASQAGSLRLAIRSKDEE 235


>gi|317122041|ref|YP_004102044.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM
           12885]
 gi|315592021|gb|ADU51317.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM
           12885]
          Length = 284

 Score = 98.7 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 73/191 (38%), Gaps = 7/191 (3%)

Query: 42  PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101
               + V+++   L   + + P ++     P   V    + D         + G ++R  
Sbjct: 29  ATASLPVVVATQALQAPLKIEPGMVAVSHVPAAAVHPEAVSDPA------AVVGRVLRRD 82

Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           +  G+P+    +      GLS  L +G++A  +   +   +GG ++P D VDV+ V    
Sbjct: 83  VEAGEPLLAADVAAGQGAGLSLYLEEGQQAFFIPARLEQGLGGAVEPGDRVDVIFVG-GE 141

Query: 162 ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
                   +L N+ V+ +                 + ++  QA+ L  A +  ++ L L 
Sbjct: 142 GPGAVARTLLENLPVLQVRDEEGRRWEEGRPMGVLVAVSRDQAERLAYALTYGRVFLALA 201

Query: 222 SIADLNPSSSE 232
             A  +  S+ 
Sbjct: 202 PAAARSGGSAG 212


>gi|329935283|ref|ZP_08285249.1| hypothetical protein SGM_6766 [Streptomyces griseoaurantiacus M045]
 gi|329305106|gb|EGG48965.1| hypothetical protein SGM_6766 [Streptomyces griseoaurantiacus M045]
          Length = 237

 Score = 98.3 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 87/253 (34%), Gaps = 29/253 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  + AL A      ++S         +       +     + D+A    
Sbjct: 1   MNSRQRRGVILLVLSALCALGAFAGVLS-----VIRDVNSKVGPEVTAYRLRNDIAPYKE 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           ++ +  + V+ PE  +    + D+ +      + G +    + KG  ++ + +V R    
Sbjct: 56  LSADQFQRVSMPERWLPRTAVTDLAR------IRGKIAVTRLEKGSLLQSDMIVARP--- 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIA 178
               L  G++   + I  ++ V G I P   V++         + K    V++ N RV+ 
Sbjct: 107 ---ALAAGQQEIAIMIDAATGVAGKIDPGSRVNIYATFKAENDKGKDQSKVIVENARVLD 163

Query: 179 IDHNI---------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNP 228
           +             +           T  L    A+ +  A+S A+ + L L +      
Sbjct: 164 VGKITALDPDQSSDERRRSATQAVPITFALGTADAQRVAYAESFAEHVRLALVAGGSRQQ 223

Query: 229 SSSEDSDVWDVQE 241
               D      ++
Sbjct: 224 VPPGDRTYTLDED 236


>gi|302542852|ref|ZP_07295194.1| flp pilus assembly protein CpaB [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460470|gb|EFL23563.1| flp pilus assembly protein CpaB [Streptomyces himastatinicus ATCC
           53653]
          Length = 234

 Score = 98.3 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 85/250 (34%), Gaps = 26/250 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  +  L AG     ++S         +             KG++     
Sbjct: 1   MNSRQRRGVILLVLSVLCAGGAFAGVLS-----VVNDVESKVGPETTAYKLKGNVDAYEA 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +     E V+ PE  V    + D      + E+ G +    + +G  ++ + + +R    
Sbjct: 56  LDAGDFEKVSMPERWVPSTAVTD------LSEVRGRIAATRLSQGSLLQTDMVANRP--- 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIA 178
               L  G++   + I  ++ V G I P   V++        +       +++ +  VI 
Sbjct: 107 ---ALKAGQQEIAIMIDAATGVAGKITPGAKVNIYATFEGKAQGEASVSKLIVDDAEVID 163

Query: 179 IDH------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSS 231
           +        + D + RV      T  L    A+ +  A+S A  + L L       P S 
Sbjct: 164 VGKLSALKPDEDDERRVDQAVPITFALDTKDAQRVAYAESFASHVRLALIGPGADAPVSP 223

Query: 232 EDSDVWDVQE 241
            D       +
Sbjct: 224 RDRTYTLGGD 233


>gi|139438675|ref|ZP_01772159.1| Hypothetical protein COLAER_01160 [Collinsella aerofaciens ATCC
           25986]
 gi|133775755|gb|EBA39575.1| Hypothetical protein COLAER_01160 [Collinsella aerofaciens ATCC
           25986]
          Length = 224

 Score = 98.3 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 20/215 (9%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK----FINVLISKGDLAVGMVVTPN 64
           I +S V  ++A ++ M   S    Q E+V  E  AK     + V ++  D+ VG  +   
Sbjct: 12  IAISLVAGVLAALLCMVYGSSIRSQAEQVQAETLAKYGGDRVEVCVAARDIDVGETLDET 71

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
            +    +    +    + +      ++++ G +    I K   I     V          
Sbjct: 72  NVITQEWLTSLLPRDAVTE------LRQVRGDVTTSRIPKNAVICN---VYTKAESHKLE 122

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184
           +PKGK A ++ +    +VGG      +VDV + +     +     V+             
Sbjct: 123 VPKGKVAVSVAVDAEHSVGGATGVGSYVDVYVQKDGVTDRLCGAYVID-------TSEDS 175

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
              R       TL   P   K L+ A     +SL 
Sbjct: 176 GATREGKIEWVTLAADPEDVKELLGASGKGTVSLT 210


>gi|333024721|ref|ZP_08452785.1| putative flp pilus assembly protein CpaB [Streptomyces sp. Tu6071]
 gi|332744573|gb|EGJ75014.1| putative flp pilus assembly protein CpaB [Streptomyces sp. Tu6071]
          Length = 236

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 90/243 (37%), Gaps = 27/243 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+V+  + A+ A I  + ++        +V  E  A        K D+A    
Sbjct: 1   MNSRQRRGVVLMVLSAVCALIALVGVLGVVRNVNSKVGDEKTA-----YRLKDDIAPYKS 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  +  E V+ PE  + D  +        +  L G +    + KG  ++ + +V+R    
Sbjct: 56  LDASQFEKVSVPERWLPDTAVTR------LGALRGKIAVTTLHKGSLLQDDMIVNRP--- 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIA 178
               L  G++   + I  ++ V G I P   V++          +K    +++   +V+ 
Sbjct: 107 ---ALRAGEQEIAIMIDAATGVAGKITPGSSVNIYATFKGQNENQKDESRLIVERAQVLD 163

Query: 179 IDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSS 230
           +           D+  R       T  L    A+ +  A+S A  + L L    +  P++
Sbjct: 164 VGKLTPFDQNNDDNRNRSTEAVPITFGLGTTDAQRVAYAESFATHVRLALVGAGEQPPAA 223

Query: 231 SED 233
           +  
Sbjct: 224 AGP 226


>gi|56460013|ref|YP_155294.1| Flp pilus assembly protein CpaB [Idiomarina loihiensis L2TR]
 gi|56179023|gb|AAV81745.1| Flp pilus assembly protein CpaB [Idiomarina loihiensis L2TR]
          Length = 235

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 82/212 (38%), Gaps = 14/212 (6%)

Query: 1   MKLTR--LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58
           MK     +  ++ S + ++V   +  + +     +  +  + N      V++   DL VG
Sbjct: 1   MKKKAKWIFAVIFSSIISMVTIFLINQYLQQETSRRLQEASGNADS---VVVFSKDLNVG 57

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
            ++  + L    +P E + + +  +    +A   + G  +R  +  G+P+    L +  N
Sbjct: 58  DILEVSDLLVRKYPHELINEHWYLE----SAANLIIGRKLRSSVKSGEPVSERVLSNNQN 113

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
            GLS +LP G  A T+          ++K  D VD+V V    E      V    I V  
Sbjct: 114 NGLSEVLPNGYYAITVTTDNLGHHNALLKVGDLVDIVFVGESFENSRQ-YVSFEEIEVFD 172

Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAA 210
           I       +      + TL + P +  A   A
Sbjct: 173 I----HGLQEGYGSYSLTLLVEPEKVAAFTRA 200


>gi|167845918|ref|ZP_02471426.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           B7210]
          Length = 207

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 71/212 (33%), Gaps = 26/212 (12%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +   +    A++ GI A  L                   + V+++   L  G  +  + L
Sbjct: 8   IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P      G   +         + G +    I    P+   +L+     GL+  + 
Sbjct: 68  KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177
            G+RA  + +  ++AVG  ++P + VDV +                +    ++LS +RV+
Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175

Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQA 204
           +        +           TA L +   Q 
Sbjct: 176 SFGDATVERDGTPGPTGAGARTAVLAVPTAQV 207


>gi|326390773|ref|ZP_08212326.1| SAF domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993167|gb|EGD51606.1| SAF domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 212

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 74/227 (32%), Gaps = 32/227 (14%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             + + I +S + A        +                  K I V+ +  D+  G  + 
Sbjct: 4   KKKAILIALSLILAGGLSFFQYQYFKSM---------AESDKKIQVIAAVSDIKSGEKID 54

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
                      + +              +       +V I  G  +    +         
Sbjct: 55  ------TKLGIKEIPQSAYVKEMYLANEKATG--YAKVDIAAGSYVLKSMVSHEEV---- 102

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI--- 179
            +L +  R  T+ ++++S++ G IKP D VD+  V     +     +V   +++  +   
Sbjct: 103 PVLKEDMRRVTIGVNLTSSLAGKIKPGDFVDIGWVPKDEAKDGASKIVAEKVQIYDVVNK 162

Query: 180 --------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
                   D N   D+  L+ +  TL +TP QA  +   ++   L L
Sbjct: 163 SGEDVRKADKNNQYDKESLIPAAVTLIVTPEQAVIIKEYEAKGSLFL 209


>gi|302388996|ref|YP_003824817.1| SAF domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302199624|gb|ADL07194.1| SAF domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 214

 Score = 97.9 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 33/229 (14%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             + + IV+S + A     +  R                  + I V+++  D+  G  +T
Sbjct: 5   KRKTVLIVISLLLATGLTFLQYRYFKSM---------AESDRKIQVVVAAADIEAGEDIT 55

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              +     P+     G            E      +V I  G  I  E +         
Sbjct: 56  -GRIGLKTIPQSAYVKGMYL-------PNEKVSGYAKVNISAGSYILKEMVSTEKV---- 103

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
            ++  G R  T+ ++++S++ G I+P D VDV  V    E+     V+   +++  + + 
Sbjct: 104 PVVENGMRRVTIGVNLTSSLAGKIRPGDVVDVGWVPKEQEKGAGSKVIAQKVQIYDVVNK 163

Query: 183 IDSDERVLV------------GSTATLELTPMQAKALVAAQSVAKLSLV 219
           +  D                  S  TL +TP QA  +   + +  L LV
Sbjct: 164 MGEDTTKKGDKKNQYEKDMLIPSAVTLIVTPEQAVMIKYHEVIGSLFLV 212


>gi|296391004|ref|ZP_06880479.1| Flp pilus assembly protein CpaB [Pseudomonas aeruginosa PAb1]
          Length = 303

 Score = 97.9 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 23/199 (11%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   VL++  DL    V+  + L         V           +  + L G  V V
Sbjct: 51  EKLERKPVLVASRDLPALAVIGKDDLSVELLRTAPV--------GSYDRPEALLGKRVWV 102

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            +  G  +    L     G L+  +   +RA  + +      GG + P D+VDV++    
Sbjct: 103 AVPAGSILSAATL--EPGGPLARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRD 160

Query: 161 SERKPTV---TVVLSNIRVIAID----------HNIDSDERVLVGSTATLELTPMQAKAL 207
                +     +VL  +RV+                + ++      TA L +       L
Sbjct: 161 ERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARL 220

Query: 208 VAAQSVAKLSLVLRSIADL 226
           + A     L L +RS  + 
Sbjct: 221 MLASQAGSLRLAIRSKDEE 239


>gi|198284414|ref|YP_002220735.1| Flp pilus assembly protein CpaB [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667886|ref|YP_002427082.1| hypothetical protein AFE_2705 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248935|gb|ACH84528.1| Flp pilus assembly protein CpaB [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218520099|gb|ACK80685.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 323

 Score = 97.9 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 104/279 (37%), Gaps = 43/279 (15%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPH---HVQTEEVITENPAKFINVLISKGDLAV 57
           M  T  + I +  + A+  G+ A  +  P      +T     + P   + V+++   L+ 
Sbjct: 1   MGNTAKIVIAILVLLAIALGVSAYLVSQPSPVVQSKTSAAAPQQPTAGVAVVVAAKTLSA 60

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G  + P+ ++ + +PE     G   +         + G + +V I  G P+    L+   
Sbjct: 61  GFPIPPDGVKVLHYPE--FPAGAFHETA------HVVGKVPQVNIGMGAPVMSSNLL--- 109

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVL 171
             GL++ +P+G  A  +D++ + AVG  ++P D+VDV    +  +            ++L
Sbjct: 110 -SGLATQVPEGDVAMAIDVNKAIAVGDHLQPGDYVDVFTTLAGDQMTMHGGWPTQSRLLL 168

Query: 172 SNIRVIAIDHNI----------------------DSDERVLVGSTATLELTPMQAKALVA 209
           +++RV+A+                           +       ST  L++    A  L  
Sbjct: 169 ADLRVLAVGPQTVVRHVAQGEPSAFGPAAGSAGSSNQPPREPPSTVVLQVPVASAATLAL 228

Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQI 248
           A     L L LR+  D     +             E+ +
Sbjct: 229 ASGQGHLLLALRNPKDHTLPDTGAFPTPSPALPPAELPV 267


>gi|70734200|ref|YP_257840.1| hypothetical protein PFL_0698 [Pseudomonas fluorescens Pf-5]
 gi|68348499|gb|AAY96105.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 311

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 81/268 (30%), Gaps = 43/268 (16%)

Query: 1   MKLTRLMGIV-VSGVFALVAGIIAMRLVSPHHVQT-----------EEVITENPAKFINV 48
           M     MG+  +  V A+  G   + L                       +        V
Sbjct: 1   MNSRLTMGLAGLLLVGAVFFGYWGLVLSRKPEPAPPVQPVAPSVVEPTTTSAEDQTRQPV 60

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           ++   D+   + +  + L            G +      +A+ +  G      +  G  +
Sbjct: 61  VVLVRDVPPFVPLAADDLALEKL--RTAPAGSL------SAISQAVGRTPWRQLNAGTWL 112

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-- 166
             +       G L+ ++   +RA  + +       G + P D+VDVV+        P   
Sbjct: 113 NEQSFS--TGGALARMIHSDERALAVAVDEVIGAAGQLSPGDYVDVVLFLRQDTSNPQQS 170

Query: 167 VTVVLSNIRVIAIDHN-------------------IDSDERVLVGSTATLELTPMQAKAL 207
             + +  +RV+A+                      +  D+R L   T  L +       L
Sbjct: 171 AQIAVPAMRVLAVGEQLGLANDGQPASPGLSNEEKLKQDQRRLNARTVVLAVPEQLLSRL 230

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           + A  V  L L +RS  +   +     +
Sbjct: 231 MLATQVGVLRLAVRSSEEQRLAHYWAGN 258


>gi|51891526|ref|YP_074217.1| hypothetical protein STH388 [Symbiobacterium thermophilum IAM
           14863]
 gi|51855215|dbj|BAD39373.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 278

 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 95/271 (35%), Gaps = 46/271 (16%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + +V + V AL+A    +R +                +   VL    ++     V P+ +
Sbjct: 8   LALVGAFVCALLAAWFNIRFLEMQQ------------ERFTVLTVVREVPPYTPVGPDAV 55

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           ++ A P E+V    I D         L+G   R  ++ G  +R   LV  G   L++ L 
Sbjct: 56  QFAAVPRESVPADAITDPS------ALEGRYTRALLIPGTILREAHLVPAGGSSLAARLA 109

Query: 127 ----KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS------------ERKPTVTVV 170
                  RA  + +  ++ V G ++  D VD+++  +               R     V+
Sbjct: 110 AAASTDVRAMALRVDEATGVAGTLQEGDPVDILVAINADVTEAQERGEGRPARGTLARVI 169

Query: 171 LSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230
              + V+ +       +     S   L++TP  A+ +  A +   + L       L    
Sbjct: 170 AQRVPVLHV-----QRDEAGGPSAVVLQVTPRTAEEIAFAHANGMIWL-------LTSPY 217

Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261
           +   +        +EI   + G+     GE 
Sbjct: 218 TGPDEPVATTGVDREIFFERYGIGQRDTGEA 248


>gi|282865299|ref|ZP_06274351.1| Flp pilus assembly protein CpaB [Streptomyces sp. ACTE]
 gi|282559772|gb|EFB65322.1| Flp pilus assembly protein CpaB [Streptomyces sp. ACTE]
          Length = 237

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 86/254 (33%), Gaps = 27/254 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  +  L A      ++S         +       +     K D+A    
Sbjct: 1   MNSRQRRGVILLLLSVLCAFGAFAGVLSVISD-----VNAKVGPEVAAYQVKTDVAPYTT 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           + P   E V  P+  +    + D+        ++G +    +  G  ++ + LV R    
Sbjct: 56  LEPGQFEKVTMPKRWLSRNAVTDLAV------INGKIAVTRLHAGSLLQDDMLVKRP--- 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIA 178
               +  G++   + I  ++ V G I+P + V++           K T  V++ N +VI 
Sbjct: 107 ---RVENGEQEIAIMIDAATGVAGKIRPGNLVNIFATFAGENEGEKATSRVIVPNAKVID 163

Query: 179 IDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSS 230
           +                +      T  L    A+ +  A+S A+ + L L          
Sbjct: 164 VGELTALEPKKDQRGSGLTEAVPITFALNTTDAQRVAYAESFAEHVRLALLPENSPTTLR 223

Query: 231 SEDSDVWDVQEEGK 244
             +      +++ K
Sbjct: 224 PGEGSYSLDEDKNK 237


>gi|254762576|ref|ZP_05214416.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Australia
           94]
          Length = 201

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 25/196 (12%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK ++        V    A VAGI                  EN  K   ++++  D+  
Sbjct: 1   MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115
              +  ++L     P + +    +         +E+ G       PI +   +   K+V 
Sbjct: 51  HTEIKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVK 105

Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170
           +     S++  L  G+ A  + +   ++ G  I PN +VD+    +V+     K     +
Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDSETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165

Query: 171 LSNIRVIAIDHNIDSD 186
              +RV A   +   D
Sbjct: 166 FQRVRVTAAKDSNTED 181


>gi|254239025|ref|ZP_04932348.1| hypothetical protein PACG_05202 [Pseudomonas aeruginosa C3719]
 gi|126170956|gb|EAZ56467.1| hypothetical protein PACG_05202 [Pseudomonas aeruginosa C3719]
          Length = 303

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 23/212 (10%)

Query: 28  SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87
           S          +    +   VL++  DL    V+  + L         V           
Sbjct: 38  SVAPASATVDASLEKLERKPVLVASRDLPALAVIGKDDLSVELLRTAPV--------GSY 89

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
           +  + L G  V V +  G  +    L     G L+  +   +RA  + +      GG + 
Sbjct: 90  DRPEALLGKRVWVAVPAGSILSAATL--EPGGPLARTIRPDERAMAIAVDEVVGGGGFVL 147

Query: 148 PNDHVDVVMVRSLSERKPTV---TVVLSNIRVIAID----------HNIDSDERVLVGST 194
           P D+VDV++         +     +VL  +RV+                + ++      T
Sbjct: 148 PGDYVDVMLFVRDERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRT 207

Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           A L +       L+ A     L L +RS  + 
Sbjct: 208 AVLAVPEDGVARLMLASQAGSLRLAIRSKDEE 239


>gi|218893397|ref|YP_002442266.1| RcpC [Pseudomonas aeruginosa LESB58]
 gi|218773625|emb|CAW29439.1| RcpC [Pseudomonas aeruginosa LESB58]
          Length = 303

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 23/212 (10%)

Query: 28  SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87
           S          +    +   VL++  DL    V+  + L         V           
Sbjct: 38  SVAPASATVDASLEKLERKPVLVASRDLPALAVIGKDDLSVELLRTAPV--------GSY 89

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
           +  + L G  V V +  G  +    L     G L+  +   +RA  + +      GG + 
Sbjct: 90  DRPEALLGKRVWVAVPAGSILSAATL--EPGGPLARTIRPDERAMAIAVDEVVGGGGFVL 147

Query: 148 PNDHVDVVMVRSLSERKPTV---TVVLSNIRVIAID----------HNIDSDERVLVGST 194
           P D+VDV++         +     +VL  +RV+                + ++      T
Sbjct: 148 PGDYVDVMLFVRDERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRT 207

Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           A L +       L+ A     L L +RS  + 
Sbjct: 208 AVLAVPEDGVARLMLASQAGSLRLAIRSKDEE 239


>gi|107100111|ref|ZP_01364029.1| hypothetical protein PaerPA_01001132 [Pseudomonas aeruginosa PACS2]
 gi|254244884|ref|ZP_04938206.1| hypothetical protein PA2G_05757 [Pseudomonas aeruginosa 2192]
 gi|126198262|gb|EAZ62325.1| hypothetical protein PA2G_05757 [Pseudomonas aeruginosa 2192]
          Length = 303

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 23/212 (10%)

Query: 28  SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87
           S          +    +   VL++  DL    V+  + L         V           
Sbjct: 38  SVAPASATVDASLEKLERKPVLVASRDLPALAVIGKDDLSVELLRTAPV--------GSY 89

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
           +  + L G  V V +  G  +    L     G L+  +   +RA  + +      GG + 
Sbjct: 90  DRPEALLGKRVWVAVPAGSILSAAAL--EPGGPLARTIRPDERAMAIAVDEVVGGGGFVL 147

Query: 148 PNDHVDVVMVRSLSERKPTV---TVVLSNIRVIAID----------HNIDSDERVLVGST 194
           P D+VDV++         +     +VL  +RV+                + ++      T
Sbjct: 148 PGDYVDVMLFVRDERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRT 207

Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           A L +       L+ A     L L +RS  + 
Sbjct: 208 AVLAVPEDGVARLMLASQAGSLRLAIRSKDEE 239


>gi|15599501|ref|NP_252995.1| RcpC [Pseudomonas aeruginosa PAO1]
 gi|9950527|gb|AAG07693.1|AE004846_10 RcpC [Pseudomonas aeruginosa PAO1]
          Length = 303

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 23/212 (10%)

Query: 28  SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87
           S          +    +   VL++  DL    V+  + L         V           
Sbjct: 38  SVAPASATVDASLEKLERKPVLVASRDLPALAVIGRDDLSVELLRTAPV--------GSY 89

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
           +  + L G  V V +  G  +    L     G L+  +   +RA  + +      GG + 
Sbjct: 90  DRPEALLGKRVWVAVPAGSILSAATL--EPGGPLARTIRPDERAMAIAVDEVVGGGGFVL 147

Query: 148 PNDHVDVVMVRSLSERKPTV---TVVLSNIRVIAID----------HNIDSDERVLVGST 194
           P D+VDV++         +     +VL  +RV+                + ++      T
Sbjct: 148 PGDYVDVMLFVRDERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRT 207

Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           A L +       L+ A     L L +RS  + 
Sbjct: 208 AVLAVPEDGVARLMLASQAGSLRLAIRSKDEE 239


>gi|170720035|ref|YP_001747723.1| Flp pilus assembly protein CpaB [Pseudomonas putida W619]
 gi|169758038|gb|ACA71354.1| Flp pilus assembly protein CpaB [Pseudomonas putida W619]
          Length = 315

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 66/211 (31%), Gaps = 33/211 (15%)

Query: 42  PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101
             +   +++ +  L     +T   +       + V  G    V        + G     P
Sbjct: 57  EPQRFPIVVLRKALPANTPLTAEDVLLERL--QVVPAGAFQQVD------HVIGRSSARP 108

Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           +  G  +       +  G L+ ++   +RA  + +       G + P D VDV++     
Sbjct: 109 LAAGSWLDESSF--QPGGPLARMIRAHERAVAVGVDEVVGAAGQLYPGDFVDVLLYLREE 166

Query: 162 ERKPTV--TVVLSNIRVIAIDHNIDSDERVLVG---------------------STATLE 198
              P     VVL  +RV+++   +                               T  L 
Sbjct: 167 ANNPQSSAQVVLPALRVLSVGEQMGVTNDGRPALTAEELKARREQATPGNLASTRTVVLA 226

Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           +    A  L+ A  V  L L +RS A+   +
Sbjct: 227 VPEALASRLMLAAQVGTLRLAVRSAAEQRLA 257


>gi|72162670|ref|YP_290327.1| hypothetical protein Tfu_2271 [Thermobifida fusca YX]
 gi|71916402|gb|AAZ56304.1| hypothetical protein Tfu_2271 [Thermobifida fusca YX]
          Length = 258

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 20/232 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  V A  A  + + +VS  +    E+ T        VL    D+     
Sbjct: 1   MNPRQRRGVLLMIVAAFGAIAVFLTIVSYVNTLNRELGTYR-----TVLRLTQDVDPYQP 55

Query: 61  VTPNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGV--LVRVPILKGDPIRLEKLVDRG 117
           +T +++E    P +   +  F+ D+   +      G   +    +  G  ++   ++   
Sbjct: 56  ITEDMVEPYEVPAKFFDEDLFLSDLASADEALSQPGSEPVSATFLHAGTLLQKSMVIP-- 113

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRV 176
               +  L  G+R   + I+  + V G +     VDV      +E+ P   + VL+N+ V
Sbjct: 114 ----APALENGEREIAIMINAETGVAGKVSRQSRVDVYASFQANEQSPACAIRVLTNVEV 169

Query: 177 IAID----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSI 223
           + +                    T  LTP QA  L  A+S A K+ L L S 
Sbjct: 170 LDVGDIGSQIDAQTGGTNTVVPVTFRLTPQQALQLTYAESFASKVRLALVSA 221


>gi|269126095|ref|YP_003299465.1| Flp pilus assembly protein CpaB [Thermomonospora curvata DSM 43183]
 gi|268311053|gb|ACY97427.1| Flp pilus assembly protein CpaB [Thermomonospora curvata DSM 43183]
          Length = 245

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 25/221 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RL+ IVV+   A +  ++    V     +            +NVL++   +  G  
Sbjct: 1   MN-RRLITIVVAVALAGLGSLMVYGYVHGADERALRGQRA-----VNVLVAAKAIPAGTA 54

Query: 61  VT----PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           +T            FP  +V D  +  +   ++      ++   P+  G+ IR   LV  
Sbjct: 55  ITRLVADGYAVTRKFPASSVPDDVLSRIEDVDSD-----MVTGSPVRPGELIRKPLLV-P 108

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-------RSLSERKPTVTV 169
                +  +P+GK A T++++    V G + P   V V +                   +
Sbjct: 109 RGSSQTFTVPEGKIALTVELTDPQRVAGHVVPGSKVAVFLTRRILDSNGRPRGELTETRL 168

Query: 170 VLSNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALV 208
           ++S I V+ I          +    S  TL +T  QA+ LV
Sbjct: 169 LMSGIDVLWIGPAPKDKSAAKTEGSSLVTLAVTQRQAEKLV 209


>gi|167894494|ref|ZP_02481896.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           7894]
          Length = 204

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 26/208 (12%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +   +    A++ GI A  L                   + V+++   L  G  +  + L
Sbjct: 8   IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P      G   +         + G +    I    P+   +L+     GL+  + 
Sbjct: 68  KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177
            G+RA  + +  ++AVG  ++P + VDV +                +    ++LS +RV+
Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175

Query: 178 AIDHNIDSDERV-----LVGSTATLELT 200
           +        +           TA L + 
Sbjct: 176 SFGDATVERDGTPGPTGAGARTAVLAVP 203


>gi|77456877|ref|YP_346382.1| Flp pilus assembly CpaB [Pseudomonas fluorescens Pf0-1]
 gi|77380880|gb|ABA72393.1| putative Flp pilus assembly protein [Pseudomonas fluorescens Pf0-1]
          Length = 312

 Score = 95.6 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 31/225 (13%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
              +            V++   D+A  + +T   +            G +       ++ 
Sbjct: 43  TPVDTPAPVEDPTRQPVVVLVRDIAPFVTLTAADVTVEKL--RTAPAGSLA------SVD 94

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
           ++ G      +  G  +  E         L+ ++  G+RA  + +      GG + P D+
Sbjct: 95  QVIGRTPWRALSAGTWLTQESF--EAGSPLARMIRPGERALAVAVDEVINAGGQLAPGDY 152

Query: 152 VDVVMVRSLSER--KPTVTVVLSNIRVIAIDHNI-------------------DSDERVL 190
           VDV++     E   +PT  +V+  +RV+ +   +                     ++   
Sbjct: 153 VDVLLFLRKDENNPQPTAQLVVPAVRVLGVGSQMGLTNSGQPASPAHSEEEKLKQEQLRA 212

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
              +  L +       L+ A S   L L +RS  +   +     D
Sbjct: 213 AARSVVLAVPEPLLNRLMLASSAGVLRLAVRSADEQQLARYWAGD 257


>gi|320101691|ref|YP_004177282.1| Flp pilus assembly protein CpaB [Isosphaera pallida ATCC 43644]
 gi|319748973|gb|ADV60733.1| Flp pilus assembly protein CpaB [Isosphaera pallida ATCC 43644]
          Length = 436

 Score = 94.8 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 8/194 (4%)

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +TP     +      +   F D                   I KG+ I  + L D   
Sbjct: 137 DTLTPEQRAELERRMRELPV-FFDRAGLQRLADAKSPYWASQTIGKGEIITRDMLGDPAT 195

Query: 119 -GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
             G+ + +  G R  ++ ++  +  GG + P ++VDV  V +    + T  ++L N++V+
Sbjct: 196 IPGVYTNVRPGYRGISIKVTPETGGGGHVLPGNYVDVGAVYT---NQRTAKILLQNVKVL 252

Query: 178 AIDHNIDSDERVLV--GSTATLELTPMQAKALVAA-QSVAKLSLVLRSIADLNPSSSEDS 234
           A+   I  D +       T  LEL P +A  L  A      L L++R   D    S +  
Sbjct: 253 AVGEAIKPDPKKAAMNAQTVVLELKPEEANLLQVAVGQRGTLRLLIRGNKDDQLLSEDKL 312

Query: 235 DVWDVQEEGKEIQI 248
           +V   + E + + +
Sbjct: 313 EVVYGESEAERLDL 326


>gi|239979686|ref|ZP_04702210.1| hypothetical protein SalbJ_09627 [Streptomyces albus J1074]
          Length = 235

 Score = 94.8 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 87/251 (34%), Gaps = 27/251 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  +  L A      ++S         +       +     K D+A    
Sbjct: 1   MNARQRRGVLLLLLSVLCAVGAFAGVLS-----VVRDVNAKVGPEVPAYRLKTDVAPYKE 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           ++ +  E V+ PE    +  + D      ++++ G +    + +G  ++ + +V R    
Sbjct: 56  LSADQFEKVSMPERWRSENAVTD------LRQIRGKIAVTTLRQGSLLQTDMIVARPE-- 107

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIA 178
               +  G++   + I  ++ V G I P   V++           K    +++ N RVI 
Sbjct: 108 ----VRPGEQEIAIMIDAATGVAGKITPGSDVNIYATFKAENDGEKDQSRIIVENARVID 163

Query: 179 ID-------HNIDSDERVLVGSTATLELTPMQAKALVAAQS-VAKLSLVLRSIADLNPSS 230
           +           D   + +     T  L+   A+ +  A+S  A + L L          
Sbjct: 164 VGKLTALEPDQDDRRRQPVDAVPITFALSAADAQRVAYAESFAAHVRLALVGPGSDEGLR 223

Query: 231 SEDSDVWDVQE 241
             D      ++
Sbjct: 224 RGDRTYTLDED 234


>gi|226309723|ref|YP_002769617.1| hypothetical protein BBR47_01360 [Brevibacillus brevis NBRC 100599]
 gi|226092671|dbj|BAH41113.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 242

 Score = 94.8 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 80/246 (32%), Gaps = 26/246 (10%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + ++   +FA   G+    ++ PH V   ++ +    +             G ++    +
Sbjct: 6   LRLLAILLFATCIGVATYIILKPHQVTYIQLRSTVEKES------------GQLLEARDM 53

Query: 67  EWVAFPEENVFDGFIDDVHQPNAM-------QELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           E    P      G       P          Q L G+     +  G P+    L    N 
Sbjct: 54  E----PLTLRLGGIFQQPIAPIPGLIPWEEGQSLVGLAFTRQVKGGRPLLKSDLEQTSNA 109

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
             S ++ +     ++ I   + V   +   + V V       E      ++L N+ +I I
Sbjct: 110 QGSGVITEKMTGMSIPIDNVAGVSPHVSSGERVHVYASFE-DETGAHSGLLLQNMPIIGI 168

Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
              ++ D   LV    TL LT  +A  L  A    K+ L L ++ D       D      
Sbjct: 169 QREMEGDHPNLVA--VTLSLTRDEAVLLTHALHYGKIRLGLAAVKDEGNPGIGDVKFASE 226

Query: 240 QEEGKE 245
             + K 
Sbjct: 227 LMKTKT 232


>gi|297543563|ref|YP_003675865.1| SAF domain-containing protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841338|gb|ADH59854.1| SAF domain protein [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 212

 Score = 94.8 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 79/228 (34%), Gaps = 32/228 (14%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             + + I +S + A        +                  K I V+ +  D+  G  + 
Sbjct: 4   KKKAILIALSLILAGGLSFFQYQYFKSM---------AESDKKIQVIAAVSDIKAGEKID 54

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
                      + +            A  ++ G   +V I  G  +    +         
Sbjct: 55  ------TKLGIKVIPQSAYVKEMYL-ANNKVTG-YAKVDIAAGSYVLKSMVSQEK----I 102

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI--- 179
            +L +  R  T+ ++++S++ G IKP D VD+  V +   +     +V   +++  +   
Sbjct: 103 PVLKEDMRRVTIGVNLTSSLAGKIKPGDVVDIGWVPNDEAKDGASKIVAEKVQIYDVVNK 162

Query: 180 --------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                   D N   D+  L+ +  TL +TP QA  +   ++   L L+
Sbjct: 163 SGEDVRKADKNNQYDKESLIPAAVTLIVTPEQAITIREYETKGSLFLI 210


>gi|167824387|ref|ZP_02455858.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           9]
          Length = 201

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 69/206 (33%), Gaps = 26/206 (12%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +   +    A++ GI A  L                   + V+++   L  G  +  + L
Sbjct: 8   IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P      G   +         + G +    I    P+   +L+     GL+  + 
Sbjct: 68  KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177
            G+RA  + +  ++AVG  ++P + VDV +                +    ++LS +RV+
Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175

Query: 178 AIDHNIDSDERV-----LVGSTATLE 198
           +        +           TA L 
Sbjct: 176 SFGDATVERDGTPGPTGAGARTAVLA 201


>gi|167582064|ref|ZP_02374938.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           TXDOH]
          Length = 192

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 21/196 (10%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +   +    A++ GI A  L                   + V+++   L  G  +  + L
Sbjct: 8   IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADAL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P                    + G +    I+   P+   +L+     GL+  + 
Sbjct: 68  KVQQTPAPIA--------GAFPNPTLVTGRIPANDIVAQAPVLESELM----SGLADQIA 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177
            G+RA  + +  ++AVG  ++P + VDV +                +    ++LS +RV+
Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVL 175

Query: 178 AIDHNIDSDERVLVGS 193
           +        +     +
Sbjct: 176 SFGDATADRDGTPGPT 191


>gi|297192381|ref|ZP_06909779.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151331|gb|EFH31098.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 237

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 82/253 (32%), Gaps = 29/253 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R + +++  V   +A    +  V          +             K D+A    +
Sbjct: 4   RQRRGVLLILLSVVCGIAAFAGVLTV-------IADVNSKVGPETTAYRVKSDIAPYTPL 56

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
                E V+ PE  +    + D      +  L G +    +  G  ++ + +V +     
Sbjct: 57  EAGQFEKVSIPERWLSRSAVTD------LGVLRGKIAVTELRSGSLLQSDMIVQKPE--- 107

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRVIAI 179
              L  G++   + I  ++ V G I+P + V++                ++++N +VI +
Sbjct: 108 ---LESGQQEIAIMIDAATGVAGKIRPGNLVNIFATFAAQNDSGTDQSRLIVANAKVIDV 164

Query: 180 DHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSS 231
                      D           T  L    A+ +  A+S A+ + L L           
Sbjct: 165 GELTALDRRSGDRSTAPREAVPITFALNTADAQRVAYAESFAEHVRLALLPDGSPTTLRP 224

Query: 232 EDSDVWDVQEEGK 244
            D      +++ K
Sbjct: 225 GDGSYDLSEDKNK 237


>gi|291451551|ref|ZP_06590941.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291354500|gb|EFE81402.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 210

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 75/214 (35%), Gaps = 22/214 (10%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +     K D+A    ++ +  E V+ PE    +  + D      ++++ G +
Sbjct: 8   VNAKVGPEVPAYRLKTDVAPYKELSADQFEKVSMPERWRSENAVTD------LRQIRGKI 61

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               + +G  ++ + +V R        +  G++   + I  ++ V G I P   V++   
Sbjct: 62  AVTTLRQGSLLQTDMIVARPE------VRPGEQEIAIMIDAATGVAGKITPGSDVNIYAT 115

Query: 158 RSL--SERKPTVTVVLSNIRVIAID-------HNIDSDERVLVGSTATLELTPMQAKALV 208
                   K    +++ N RVI +           D   + +     T  L+   A+ + 
Sbjct: 116 FKAENDGEKDQSRIIVENARVIDVGKLTALEPDQDDRRRQPVDAVPITFALSAADAQRVA 175

Query: 209 AAQS-VAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
            A+S  A + L L            D      ++
Sbjct: 176 YAESFAAHVRLALVGPGSDEGLRRGDRTYTLDED 209


>gi|307324474|ref|ZP_07603682.1| Flp pilus assembly protein CpaB [Streptomyces violaceusniger Tu
           4113]
 gi|306890205|gb|EFN21183.1| Flp pilus assembly protein CpaB [Streptomyces violaceusniger Tu
           4113]
          Length = 234

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 81/250 (32%), Gaps = 26/250 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  +  L A      ++S         +               D+     
Sbjct: 1   MNSRQRRGVILLLLSVLCAVGAFAGVLS-----VVNDVESKVGPETTAYKLTSDVKPYKA 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +     E V+ P+  V    + D      + EL G +    + KG  ++ + + +R    
Sbjct: 56  LDAGEFEKVSMPKRYVPSTAVTD------LAELRGKIAVTQLAKGSLLQRDMIANRP--- 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--ERKPTVTVVLSNIRVIA 178
               L  G++   + I  ++ V G I P   V++      S    KP   ++++   V+ 
Sbjct: 107 ---ALKPGQQEIAIMIDAATGVAGKITPGAEVNIYATFEGSTQGEKPVSKLIVAGAEVLD 163

Query: 179 IDHNI------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSS 231
           +          D   R+      T  L    A+ +  A+S A  + L L +         
Sbjct: 164 LGRITALEPNQDDKRRINEAVPITFALDTKNAQRVAYAESFASHVRLALVAPGGGTSIGP 223

Query: 232 EDSDVWDVQE 241
            D       +
Sbjct: 224 GDRTYTLDGD 233


>gi|152989266|ref|YP_001350208.1| Flp pilus assembly protein CpaB [Pseudomonas aeruginosa PA7]
 gi|150964424|gb|ABR86449.1| Flp pilus assembly protein CpaB [Pseudomonas aeruginosa PA7]
          Length = 303

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 74/249 (29%), Gaps = 33/249 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI----------NVLI 50
           M    LM +    +   V        +       +          +           VL+
Sbjct: 1   MNSKVLMVLAGLLLVGAVLLGYLGVSIGRAPSTVQVPAVAPATSVVDASLEKLERKPVLV 60

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +  DL    V+  + L            G  D        + L G  V V +  G  +  
Sbjct: 61  ASRDLPALAVIGKDDLVVEML--RTAPAGSYDKP------EALLGKRVWVAVPAGSILSA 112

Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV--- 167
             L     G L+  +   +RA  + +      GG + P D+VDV++         +    
Sbjct: 113 ATL--EPGGPLARTIRADERAMAIAVDEVIGGGGFVLPGDYVDVMLFVRDERGGESTSLA 170

Query: 168 TVVLSNIRVIAID----------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
            +VL  +RV+                 +++      TA L +       L+ A     L 
Sbjct: 171 QLVLPGVRVLTYGERIAVGGDGQDRSATEKDPRPPRTAVLAVPAEGVARLMLASQAGALR 230

Query: 218 LVLRSIADL 226
           L +RS  + 
Sbjct: 231 LAIRSQDEE 239


>gi|318057607|ref|ZP_07976330.1| Flp pilus assembly protein CpaB [Streptomyces sp. SA3_actG]
 gi|318080518|ref|ZP_07987850.1| Flp pilus assembly protein CpaB [Streptomyces sp. SA3_actF]
          Length = 225

 Score = 93.3 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 89/235 (37%), Gaps = 30/235 (12%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           +V+S V AL+A +  + +V   + +  +  T            K D+A    +  +  E 
Sbjct: 1   MVLSAVCALIALVGVLGVVRNVNSKVGDEKTA--------YRLKDDIAPYKSLDASQFEK 52

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128
           V+ PE  + D  +        +  L G +    + KG  ++ + +V+R        L  G
Sbjct: 53  VSVPERWLPDTAVTQ------LGALRGKIAVTTLHKGSLLQDDMIVNRP------ALRAG 100

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNI--- 183
           ++   + I  ++ V G I P   V++          +K    +++   +V+ +       
Sbjct: 101 EQEIAIMIDAATGVAGKITPGSSVNIYATFKGQNENQKDESRLIVERAQVLDVGKLTPFD 160

Query: 184 ----DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSED 233
               D+  R       T  L    A+ +  A+S A  + L L    +  P+++  
Sbjct: 161 QNNDDNRNRSTEAVPITFGLGTTDAQRVAYAESFATHVRLALVGAGEQPPAAAGP 215


>gi|182436324|ref|YP_001824043.1| hypothetical protein SGR_2531 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326776954|ref|ZP_08236219.1| Flp pilus assembly protein CpaB [Streptomyces cf. griseus
           XylebKG-1]
 gi|178464840|dbj|BAG19360.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326657287|gb|EGE42133.1| Flp pilus assembly protein CpaB [Streptomyces cf. griseus
           XylebKG-1]
          Length = 235

 Score = 93.3 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 88/251 (35%), Gaps = 27/251 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  +  L A      ++S         +       +     K ++A    
Sbjct: 1   MNSRQRRGVILLLLSVLCAFAAFAGVLSVISD-----VNSKVGPEVTAYQLKSNVAPYTA 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +     E +  P+  + +  + D      ++E++  +    + +G  ++ + +V +    
Sbjct: 56  LNSGQFEKIKMPKRWLSENAVTD------LREVESKIAVTELRQGSLLQSDMMVRKPE-- 107

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIA 178
               L  G++   + I  S+ V G I P   V++    +  ++       V++SN +V+ 
Sbjct: 108 ----LRAGEQEIAIMIDASTGVAGKITPGATVNIYATFAGEQQGDPAQSKVIVSNAKVLD 163

Query: 179 IDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSS 230
           +           D   R       T  L  +  + +  A+S A+ + L L +        
Sbjct: 164 VGELTALDPSADDRGTRATEAVPITFALNTLDTQRVAYAESFAEHVRLALVAPGSDGTIR 223

Query: 231 SEDSDVWDVQE 241
             D      ++
Sbjct: 224 PGDRTYTLDKD 234


>gi|94312585|ref|YP_585794.1| pilus assembly protein [Cupriavidus metallidurans CH34]
 gi|93356437|gb|ABF10525.1| pilus assembly protein [Cupriavidus metallidurans CH34]
          Length = 319

 Score = 93.3 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 27/243 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   ++   +V+ V  ++AG++A+  +            +       V+++   +  G  
Sbjct: 1   MSSKQIR--IVAIVLLVLAGLLALLALQAARHTAAPAPAQGVVATHAVVVTTRAVPAGKP 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + L+ +  P +    G   DV +      + G +  V +    P+   +L+     G
Sbjct: 59  LPADALQVLQLPID--PGGAYQDVAR------VAGQVPLVNLGANVPVLESQLL----AG 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVI 177
           L+  +P G RA  + +     VG  ++P D VDV +V     +   +    ++LS +RV+
Sbjct: 107 LARQIPDGARAMAVAVDEVIGVGNQVQPGDFVDVFVVLRRDSQEIPQSQTRMLLSRLRVL 166

Query: 178 AIDHNIDSD----------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           A      ++           R     TA L +   Q   LV AQ   +L L LR+  D  
Sbjct: 167 AYGTGAVNEAPKQQGEQMMARREGAKTAVLSVPLEQVGTLVMAQQAGRLMLALRNPTDEA 226

Query: 228 PSS 230
             S
Sbjct: 227 MPS 229


>gi|239943893|ref|ZP_04695830.1| hypothetical protein SrosN15_23041 [Streptomyces roseosporus NRRL
           15998]
          Length = 235

 Score = 93.3 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 88/251 (35%), Gaps = 27/251 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  +  L A      ++S         +       +     K ++A    
Sbjct: 1   MNSRQRRGVILLLLSVLCAFAAFAGVLSVISD-----VNSKVGPEVTAYQLKTNVAPYTA 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +     E +  P+  + +  + D      ++E++  +    + +G  ++ + +V +    
Sbjct: 56  LNSGQFEKIKMPKRWLSENAVTD------LREVESKIAVTELRQGSLLQSDMMVRKPE-- 107

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIA 178
               L  G++   + I  S+ V G I P   V++    +  ++       V++SN +V+ 
Sbjct: 108 ----LRAGEQEIAIMIDASTGVAGKITPGATVNIYATFAGEQQGDPAQSKVIVSNAKVLD 163

Query: 179 IDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSS 230
           +           D   R       T  L  +  + +  A+S A+ + L L +        
Sbjct: 164 VGELTALDPSADDRGTRATEAVPITFALNTLDTQRVAYAESFAEHVRLALVAPGSDGIIR 223

Query: 231 SEDSDVWDVQE 241
             D      ++
Sbjct: 224 PGDRTYTLDKD 234


>gi|239990347|ref|ZP_04711011.1| hypothetical protein SrosN1_23773 [Streptomyces roseosporus NRRL
           11379]
          Length = 235

 Score = 92.9 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 88/251 (35%), Gaps = 27/251 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  +  L A      ++S         +       +     K ++A    
Sbjct: 1   MNSRQRRGVILLLLSVLCAFAAFAGVLSVISD-----VNSKVGPEVTAYQLKTNVAPYTA 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +     E +  P+  + +  + D      ++E++  +    + +G  ++ + +V +    
Sbjct: 56  LNSGQFEKIKMPKRWLSENAVTD------LREVESKIAVTELRQGSLLQSDMMVRKPE-- 107

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIA 178
               L  G++   + I  S+ V G I P   V++    +  ++       V++SN +V+ 
Sbjct: 108 ----LRAGEQEIAIMIDASTGVAGKITPGATVNIYATFAGEQQGDPAQSKVIVSNAKVLD 163

Query: 179 IDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSS 230
           +           D   R       T  L  +  + +  A+S A+ + L L +        
Sbjct: 164 VGELTALDPSADDRGTRATEAVPITFALNTLDTQRVAYAESFAEHVRLALVAPGSDGTIR 223

Query: 231 SEDSDVWDVQE 241
             D      ++
Sbjct: 224 PGDRTYTLDKD 234


>gi|328954938|ref|YP_004372271.1| Flp pilus assembly protein CpaB [Coriobacterium glomerans PW2]
 gi|328455262|gb|AEB06456.1| Flp pilus assembly protein CpaB [Coriobacterium glomerans PW2]
          Length = 223

 Score = 92.9 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 86/236 (36%), Gaps = 21/236 (8%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN----PAKFINVLISKGDLAVG 58
           + R + I +S     +A  +++   S    + + V  +         ++V ++   +  G
Sbjct: 1   MNRTIRIALSVASGALAIFLSLSYASSVRSEADRVQADALARYGGDLVSVCVATRTIEPG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +    ++   +    +  G         +++++ G  V   +     +     V    
Sbjct: 61  ETLDETNVQVKEWVASLLPQGAAT------SLRDVAGTRVTSRVPSHAVLCP---VYTET 111

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
            G +  +P GK A ++ +    A+GG ++  D VDV + +     +     +        
Sbjct: 112 SGETLDVPSGKVAVSVPVDDQHALGGAVESGDTVDVYVSKDGLSDRLCEARI-------- 163

Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           ID +            ATL + P   K L+AA +   +SL + + +    +S+   
Sbjct: 164 IDTSSRDSSADTAMKWATLAVDPDTVKELLAAIARGSVSLTMPAPSTDAKASATSG 219


>gi|294814743|ref|ZP_06773386.1| Flp pilus assembly protein CpaB [Streptomyces clavuligerus ATCC
           27064]
 gi|326443124|ref|ZP_08217858.1| Flp pilus assembly protein CpaB [Streptomyces clavuligerus ATCC
           27064]
 gi|294327342|gb|EFG08985.1| Flp pilus assembly protein CpaB [Streptomyces clavuligerus ATCC
           27064]
          Length = 237

 Score = 92.5 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 30/252 (11%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              ++ ++VS + AL A    + +++  + +     T              D+A    + 
Sbjct: 6   RRGVILLIVSVLCALGAFAGVISVINDVNSKVGPEATA--------YRLASDVAPYTALR 57

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
           P   E VA P   +    + D      +  + G +    + KG  ++ + +V R      
Sbjct: 58  PGQFEKVAVPRRWLPRTAVTD------LSTVRGKIAVTELRKGSLLQDDMIVKRPE---- 107

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAID 180
             L  G++   + I  ++ V G I P D V++                ++++N +VI + 
Sbjct: 108 --LAPGEQEIAIMIDAATGVAGKITPGDLVNIFATFAGKAEGDPDQSRIIVTNAKVIDVG 165

Query: 181 HNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSE 232
                     D   R+      T  L    A+ +  A+S A+ + L L +    +     
Sbjct: 166 RLTPLDPRRDDRRSRMREAVPITFALGTKDAQRVAHAESFAEHVRLALLAKGSPSTLRPG 225

Query: 233 DSDVWDVQEEGK 244
           DS     ++  +
Sbjct: 226 DSTYTLDEDRSR 237


>gi|83747918|ref|ZP_00944950.1| SIGNAL PEPTIDE HYPOTHETICAL; CpaB2 [Ralstonia solanacearum UW551]
 gi|207739459|ref|YP_002257852.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609]
 gi|83725451|gb|EAP72597.1| SIGNAL PEPTIDE HYPOTHETICAL; CpaB2 [Ralstonia solanacearum UW551]
 gi|206592835|emb|CAQ59741.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609]
          Length = 277

 Score = 92.5 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 72/219 (32%), Gaps = 35/219 (15%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
            +              EN      V+++   L  G  +T + +   + P          D
Sbjct: 25  WKSAHRPPAPAAAQQNENGKTLYPVVVTVKPLEAGKPITADQVAVESLPIN--PADAFAD 82

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143
                   ++ G     PI  G P+   +L    + GL+  +  G+RA  + +     VG
Sbjct: 83  ------AGKVVGREPITPIGTGVPLIGSQL----SSGLALQVAPGQRAVAITVDEVVGVG 132

Query: 144 GMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELT 200
             + P D+VDV +V     ++       ++L ++RV                    L + 
Sbjct: 133 NRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRV--------------------LAVP 172

Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
                 L  A    +L L LR+ +D    +    D   +
Sbjct: 173 VESVSQLAIAHQSGRLLLALRNPSDDAEPTVRPQDAPAL 211


>gi|297202071|ref|ZP_06919468.1| flp pilus assembly protein CpaB [Streptomyces sviceus ATCC 29083]
 gi|297148028|gb|EDY58323.2| flp pilus assembly protein CpaB [Streptomyces sviceus ATCC 29083]
          Length = 235

 Score = 92.1 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 72/214 (33%), Gaps = 22/214 (10%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +     K D+     +T    E    P+  +    + D      +  L   +
Sbjct: 33  VKSKVGPEVTAYEVKKDIEPYTRLTAAQFEKTEMPKRWLSANAVTD------LAALRDKI 86

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               + KG  ++ + +VD+        L  G++   + I  ++ V G I P   V+V   
Sbjct: 87  AVTTLKKGSLLQSDMIVDQP------ALQPGQQEVAIMIDAATGVAGKITPGSAVNVYAT 140

Query: 158 RSL--SERKPTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALV 208
                        ++++N RV+ +           D           T  L+ + A+ L 
Sbjct: 141 FEGQRENDPDQSKIIVTNARVLDVGQITALQPDADDRTREASKAVPITFALSALDAQRLT 200

Query: 209 AAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQE 241
            A+S A ++ L L +  +      ++      ++
Sbjct: 201 YAESFAKRVRLALVAPGETGTVPEQERTYELAKD 234


>gi|223984146|ref|ZP_03634297.1| hypothetical protein HOLDEFILI_01590 [Holdemania filiformis DSM
           12042]
 gi|223963878|gb|EEF68239.1| hypothetical protein HOLDEFILI_01590 [Holdemania filiformis DSM
           12042]
          Length = 238

 Score = 92.1 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 20/235 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   +  +  +    LV     + L      +            ++V IS   L    +
Sbjct: 1   MKKKIVFTLT-ALTAVLVLIFSGIFLFRRELTRRL--------SLVSVPISVSTLPPRHL 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAM-QELDGVLVRVPILKGDPIRLEKLVDRGN- 118
           +T + L W+  P   +    + +  +   +   L+G      I  G     E L      
Sbjct: 52  ITVDDLTWIDVPSAYLQADILWEEAELVGLWTRLEGT-----IPAGSFFYQEMLDAPEAM 106

Query: 119 -GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
                +LL K +    + ++IS   G +++P   VD+ +     E +  +  +L  +RV+
Sbjct: 107 ADFSVTLLNKDQAVFPLAVTISEISGQLMQPGQQVDLYVYGKWPEGQEMMDCLLRGVRVL 166

Query: 178 AIDHNIDSD---ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
            + +            + ST  L +       L  A+   ++ L L + +   P 
Sbjct: 167 ELQNRNGERIGQADDTLPSTVLLAVDQTYLAYLSIAEKKGRIELYLTASSYAEPE 221


>gi|167816011|ref|ZP_02447691.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei
           91]
          Length = 183

 Score = 92.1 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +   +    A++ GI A  L                   + V+++   L  G  +  + L
Sbjct: 8   IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P      G   +         + G +    I    P+   +L+     GL+  + 
Sbjct: 68  KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177
            G+RA  + +  ++AVG  ++P + VDV +                +    ++LS +RV+
Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175

Query: 178 AIDHNIDS 185
           +       
Sbjct: 176 SFGDATVE 183


>gi|167824271|ref|ZP_02455742.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei 9]
          Length = 192

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 17/165 (10%)

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMI 146
               +L G L+R P+  G P+    ++     G L++ L  G RA ++ I   S   G+I
Sbjct: 28  EPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLI 87

Query: 147 KPNDHVDVVMVRS---------LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVG 192
           +P D+VDV++ +            +R      + + +RV+A+         D+ +     
Sbjct: 88  EPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRA 147

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIA--DLNPSSSEDSD 235
            T T E++   A+ +     +  LSL LRS A  D     +  ++
Sbjct: 148 RTVTFEVSSRDAQVITVGAHLGALSLALRSFATSDRGAVGTAPAE 192


>gi|303241932|ref|ZP_07328425.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2]
 gi|302590487|gb|EFL60242.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2]
          Length = 257

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 49/260 (18%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   +  ++   V  L+A ++    +S +               + V+ +  ++    V+
Sbjct: 10  KNRSIYLVIAGIVLGLIAAVLMYMGISSY------------TGMVKVVAASKEIPAFSVI 57

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120
               ++ +  P+E          ++ +  Q + G + R  I     I+ E L  +G+   
Sbjct: 58  NEADIKLIDVPKEFA-------KNKASDKQLVIGRVSRTIIPADTAIQQEFLAAKGSSSS 110

Query: 121 ------LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-----------------MV 157
                 L+ L  +  RA T+ +   S  GG +KP D VD++                   
Sbjct: 111 SLLSTKLTDLQNEKLRAFTIPVDQISGCGGEMKPGDLVDIIGSFSIVIPEDESVNNQPQS 170

Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
               +++    ++   + V+       +           + + P QA+ +  A    K+S
Sbjct: 171 SKPQQKEVISKLLAGQVLVL------KTLGENTEIEGIVVAVEPQQAQEIQFALQAGKIS 224

Query: 218 LVLRSIADLNPSSSEDSDVW 237
           + L        +S   +   
Sbjct: 225 VALNPYNPDQKASKTTTTTV 244


>gi|167911034|ref|ZP_02498125.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei 112]
          Length = 210

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 15/152 (9%)

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMI 146
               +L G L+R P+  G P+    ++     G L++ L  G RA ++ I   S   G+I
Sbjct: 28  EPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLI 87

Query: 147 KPNDHVDVVMVRS---------LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVG 192
           +P D+VDV++ +            +R      + + +RV+A+         D+ +     
Sbjct: 88  EPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRA 147

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
            T T E++   A+ +     +  LSL LRS A
Sbjct: 148 RTVTFEVSSRDAQVITVGAHLGALSLALRSFA 179


>gi|260775654|ref|ZP_05884550.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608070|gb|EEX34239.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 263

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 97/265 (36%), Gaps = 27/265 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   ++ +    +     G+ A+        +  +     P +++ +   K        
Sbjct: 1   MKNKVIISLASFSILVGAYGLSAVL-----SPKPTDATEVVPTRYVKLWELKEPAKAKQE 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +T   L      E    +    D    +    + G+L R  + +G  +  +  +   +  
Sbjct: 56  LTREQLSVRRMKENEANELGYVDDVSLSI---VPGMLFRSNMAEGTLVTADDFIRPDDAD 112

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV---------- 169
            +  +L +GK    + +   + VG  I+  D +D++    L+       V          
Sbjct: 113 YVDFILAEGKMPYRLTVVTENIVGTAIESGDLIDILAFTGLNGEDAYQEVALASKPVKGA 172

Query: 170 -----VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
                + + I+V+ ++  +  D+     +T  LE+   QA  L  A+ +A L +  +SI 
Sbjct: 173 ISVTPIFAAIKVLRVETEVKKDDTQPQATTFILEMDRKQAVTLTLAKRIATLEI-QKSIG 231

Query: 225 --DLNPSSSEDSDVWDVQEEGKEIQ 247
             D++   ++  D+    +   E++
Sbjct: 232 QFDMSEYQADAGDILHDFDSIVELR 256


>gi|21223378|ref|NP_629157.1| hypothetical protein SCO5005 [Streptomyces coelicolor A3(2)]
 gi|8218167|emb|CAB92598.1| hypothetical proten SCK15.07 [Streptomyces coelicolor A3(2)]
          Length = 203

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 22/212 (10%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
                 +     K D+     +     E V  PE  + +  + D+ +      + G +  
Sbjct: 3   SKVGPEVTAYRVKSDIEPYTELGATQFEKVEMPERWLSENAVTDLSR------VRGKIAV 56

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
             +  G  ++ + +VD         L  G++   + I  ++ V G I P   V+V     
Sbjct: 57  TTLKAGSLLQTDMIVDTP------ALRPGQQEVAIMIDAATGVAGKITPGSTVNVYATFE 110

Query: 160 LSERK--PTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALVAA 210
                      ++++  +VI +             D         T  L+ + A+ +  A
Sbjct: 111 GPREGDPDQSKIIVTGAKVIDVGELTSLEPDEDSRDREPTDAVPITFALSTIDAQRITYA 170

Query: 211 QSVA-KLSLVLRSIADLNPSSSEDSDVWDVQE 241
           +S A ++ L L +         +D      ++
Sbjct: 171 ESFARRVRLALVAPGGDTTVPDKDRTYELAKD 202


>gi|39936739|ref|NP_949015.1| hypothetical protein RPA3677 [Rhodopseudomonas palustris CGA009]
 gi|192292565|ref|YP_001993170.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
 gi|39650595|emb|CAE29118.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|192286314|gb|ACF02695.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
          Length = 193

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 6/150 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R++ + ++     VA  +A                   A+ + VL++K D+ +G  
Sbjct: 7   MNPARIVVLTIAVGAGGVAAYLA-----SSTGPQPGAPAAPVAQTVEVLVAKNDIPLGQA 61

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           VTP  L+W  +P       FI     P A  ++ G + R P + G+PIR +KLV      
Sbjct: 62  VTPGDLQWQTWPAATASSNFIRRDLHPGATTDIGGSITRAPFIAGEPIRRQKLVQADGSS 121

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPN 149
            + + +P G RA + + ++     G  +  
Sbjct: 122 SVPAFVPTGMRAISTETALEPGATGARQSG 151


>gi|294146465|ref|YP_003559131.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
 gi|292676882|dbj|BAI98399.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S]
          Length = 302

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 89/250 (35%), Gaps = 37/250 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTE----EVITENPAKFINVLISKGDLA 56
           M+L     + ++      +  +A+ +    +        +      A  + ++ +   + 
Sbjct: 1   MRLGSKAKLTIAVGLTSASAFLALGVRELRNASAATVQGQAAPVRVAAPVLLVRAARAIR 60

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G  +T  ++            G            E+ G +    I     I  + +   
Sbjct: 61  TGETITAAMIRNA--------PGDPTRYPYAATSAEVVGKVATRDIGLHALIARDAVGME 112

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVT 168
               L+  +P G RA ++D +   AV G+I+P D VDV +V   ++         +    
Sbjct: 113 SK--LAIRVPMGMRAISIDTTAEIAVAGLIRPGDRVDVQVVYPGADAISGARGSGRSRAQ 170

Query: 169 VVLSNIRVIAIDHNIDSDER---------------VLVGSTATLELTPMQAKALVAAQSV 213
            +L  ++V+A+   +   ++                    T TL LTP Q   L  A+++
Sbjct: 171 ALLQMVQVLAVGEVVVGTQQASGANGGVEGALSSPPPPARTVTLALTPEQVSILSLAKNI 230

Query: 214 AKLSLVLRSI 223
             L+L LR+ 
Sbjct: 231 GALTLSLRNP 240


>gi|170724969|ref|YP_001758995.1| hypothetical protein Swoo_0604 [Shewanella woodyi ATCC 51908]
 gi|169810316|gb|ACA84900.1| conserved hypothetical protein [Shewanella woodyi ATCC 51908]
          Length = 279

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 29/272 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M  ++L+ I+           +A +L+S     T+ V  +  AK   +  +K  L  G  
Sbjct: 1   MLNSKLIFIIAFIAVLTGLYGVADKLLSTSESVTQPVSDDGIAKTFTLWQTKSSLNKGEH 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119
           ++   L+ V    +      ++   + N   +    L+   +  G  +  E+L     +G
Sbjct: 61  LSLADLKRVQLGRDESLALGVNADVELNLDPQ---SLLNSSVEAGQYLFPEQLSHPGESG 117

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167
            L+ +  +G     + ++  + +   I P D +D++ V S                    
Sbjct: 118 YLNLITREGMTLYPLTVATRNMIQDYILPGDEIDIMTVSSPQHNLANDMSRLDDFIGLRA 177

Query: 168 TVVLSNIRVIAIDH------------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAK 215
           ++++  +RVI++              +          +   +E+ P     L  AQ    
Sbjct: 178 SMLMKRVRVISVADSDTDSQSQSSKISPSMKSSDKSQTRIVIEVDPEDLPRLTLAQRTMH 237

Query: 216 LSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           +  V  S +      ++ SDV +      E++
Sbjct: 238 IE-VFHSQSYRAKPEADVSDVINNYTGVVELR 268


>gi|225017400|ref|ZP_03706592.1| hypothetical protein CLOSTMETH_01326 [Clostridium methylpentosum
           DSM 5476]
 gi|224949810|gb|EEG31019.1| hypothetical protein CLOSTMETH_01326 [Clostridium methylpentosum
           DSM 5476]
          Length = 290

 Score = 90.6 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 81/263 (30%), Gaps = 31/263 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M         + G   ++  ++    ++P      +  TE       V +    +  G  
Sbjct: 1   MNKNIFRNRTIIGAVCILLAVLVCFGITPLFNAGLKAQTEA------VRVKAEVIPRGTY 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T +++E        + D          ++ E+ G    V + K   +    L       
Sbjct: 55  ITADMVEVYTRGASGMPDSIAT------SLDEVVGRYTDVELRKNTDVNTGWLSSEPLTQ 108

Query: 121 LSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
              L  L   K A ++ I + +    G ++  D + +         + T    L  + V+
Sbjct: 109 YEYLTKLDGSKVAISVTIPTFAKGGSGKVEAGDIIMLFAT-DKDTGETTQPPELKYVEVL 167

Query: 178 AIDHNIDSDER-------------VLVGSTATLELTPMQAKALVAAQSVAKLSLV--LRS 222
           A   +  +D+                + ST TL +   QA+ L   +    L L    R 
Sbjct: 168 AATQSSGADKEYQAPQEDEEENPEESLPSTITLLVNTEQAQILAHLEESNSLHLAFVYRG 227

Query: 223 IADLNPSSSEDSDVWDVQEEGKE 245
             +         D + V+ E   
Sbjct: 228 TRENAEKFLAAQDQFFVEPEEAT 250


>gi|154499687|ref|ZP_02037725.1| hypothetical protein BACCAP_03344 [Bacteroides capillosus ATCC
           29799]
 gi|150271285|gb|EDM98542.1| hypothetical protein BACCAP_03344 [Bacteroides capillosus ATCC
           29799]
          Length = 296

 Score = 90.6 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 101/278 (36%), Gaps = 38/278 (13%)

Query: 1   MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MKL  R +  ++S V A V   +A+             I         ++     +  G 
Sbjct: 7   MKLNNRFIFGILSLVLAAVIAFVAL-----------PTIARQTNGKTEIVRITQPVLKGE 55

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +T +  E V     N+            +M +++G+ V   + +GD I   K+      
Sbjct: 56  TITSDNAEVVEVGGYNLPSNVAH------SMDDVEGLYVTADLAEGDYILTSKVSTVPVS 109

Query: 120 GLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
              +L  +P GK A ++ + +++S +   ++P D + +      +E  P     L  ++V
Sbjct: 110 SDVALNDIPSGKVAISLTVKTLASGLSDKLQPGDIIRIYHFLETAEEVPE----LRFVKV 165

Query: 177 IAIDHN----------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIA 224
           +++  +             DE     +T T+  +P QA+ +   ++     + L  R+  
Sbjct: 166 LSVTDSDGINVDNTKETTEDEEPQQSATITVLASPEQARIITEMENDGVAHVALISRNND 225

Query: 225 DLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEGI 262
            L      + D    +    E  +++        GE  
Sbjct: 226 QLAEELLAEQDKTLQEIYFPE-TLVEENAESQDGGEAA 262


>gi|167845817|ref|ZP_02471325.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei B7210]
          Length = 181

 Score = 90.6 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 17/164 (10%)

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMI 146
               +L G L+R P+  G P+    ++     G L++ L  G RA ++ I   S   G+I
Sbjct: 18  EPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLI 77

Query: 147 KPNDHVDVVMVRS---------LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVG 192
           +P D+VDV++ +            +R      + + +RV+A+         D+ +     
Sbjct: 78  EPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRA 137

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIA--DLNPSSSEDS 234
            T T E++   A+ +     +  LSL LRS A  D     +  +
Sbjct: 138 RTVTFEVSSRDAQVITVGAHLGALSLALRSFATSDRGAVGTAPA 181


>gi|229588196|ref|YP_002870315.1| hypothetical protein PFLU0648 [Pseudomonas fluorescens SBW25]
 gi|229360062|emb|CAY46916.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 313

 Score = 90.2 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 66/211 (31%), Gaps = 32/211 (15%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
           +          V++   D+     +T   L         V  G +        + +  G 
Sbjct: 48  IAAAEDQTRQPVVVLVHDVPAYRALTAADLVVERL--RTVPVGSLTQ------LDQAIGR 99

Query: 97  LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           +    +  G  +  +     G G L+ ++   +RA  + +       G + P D+VDV++
Sbjct: 100 MPLRALGAGTWLTEDSFT--GGGPLARMIRPDERALAVAVDEVIGAAGQLTPGDYVDVLL 157

Query: 157 VRSLSER--KPTVTVVLSNIRVIAIDHNIDSDERVLVG--------------------ST 194
                    + +  +VL  +R++++   +      L                       T
Sbjct: 158 FLRQDASNAEQSAQIVLPAMRLLSVGDQMGLANDGLPAVPPPVTVEERAQAAQRRAAART 217

Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
             L +       L+ A     L L +RS  +
Sbjct: 218 VVLAVPEPLLSRLMLAAQAGTLRLAVRSAEE 248


>gi|295836768|ref|ZP_06823701.1| flp pilus assembly protein CpaB [Streptomyces sp. SPB74]
 gi|295826199|gb|EFG64734.1| flp pilus assembly protein CpaB [Streptomyces sp. SPB74]
          Length = 225

 Score = 89.8 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 78/226 (34%), Gaps = 22/226 (9%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
           V   +   +     +     +             K D+A    +  +  E V+ P+  + 
Sbjct: 2   VLSAVCALVALVGVLGVVRNVNSKVGDEKTAYRLKNDIAPYKSIDASQFEKVSVPKRWLP 61

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137
           D  + +      +  L G +    + +G  ++ + +V+R        L  G++   + I 
Sbjct: 62  DTAVTE------LGALRGKIAVTTLHRGSLLQDDMIVNRP------ALRAGEQEIAIMID 109

Query: 138 ISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNI-------DSDER 188
            ++ V G I P   V++          +K    +++   +V+ +           D+  R
Sbjct: 110 AATGVAGKITPGSSVNIYATFKAQNEGQKDESRLIVERAQVLDVGKLTPFDQNNDDNRNR 169

Query: 189 VLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSED 233
                  T  L    A+ +  A+S A  + L L    +  P+++  
Sbjct: 170 TTEAVPITFGLGTGDAQRVAYAESFATHVRLALVGAGEQPPAAAGP 215


>gi|255020087|ref|ZP_05292158.1| Flp pilus assembly protein CpaB [Acidithiobacillus caldus ATCC
           51756]
 gi|254970449|gb|EET27940.1| Flp pilus assembly protein CpaB [Acidithiobacillus caldus ATCC
           51756]
          Length = 419

 Score = 89.8 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 7/188 (3%)

Query: 6   LMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64
            + + V+ +  L A  +A+  + S       E+        I  ++   D+A G ++  +
Sbjct: 25  WLILAVAILAGLGATYLAVHTLRSREEAALAELRASQKNSTIKAVVPVQDIAPGTILDLS 84

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
           ++   + P +      I     P    +  G  V VP+L+G PI    L   G   L+ +
Sbjct: 85  MVAARSIPADTAPSDVIT----PETFDQYAGHRVNVPLLQGRPILASYLS--GRRTLADI 138

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184
           +   K A T  +   S + G+++P DHVDV+   +            S  R +++    D
Sbjct: 139 VDPDKLAMTFTVDNVSTLDGLLQPGDHVDVLWFYAGGGADGQAAGDGSRSRRVSLPGMED 198

Query: 185 SDERVLVG 192
             E     
Sbjct: 199 GAEGAFGA 206


>gi|312139255|ref|YP_004006591.1| flp pilus assembly protein cpab [Rhodococcus equi 103S]
 gi|311888594|emb|CBH47906.1| putative Flp pilus assembly protein CpaB [Rhodococcus equi 103S]
          Length = 245

 Score = 89.8 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 87/258 (33%), Gaps = 34/258 (13%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
            TR++  + + V A+   +  +  V     +          + ++VL++   +       
Sbjct: 2   RTRIIAAICAIVLAVAGTLALISYVRGADARAL-----AGTRTVDVLVADQTIPKNTPAD 56

Query: 63  P--NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
               ++     PE  V         +  ++ +L G +    +L G+ +   + VD     
Sbjct: 57  SLVGMVVVKKLPEMAVLP------DRVTSLDQLSGKVALTDLLPGEQLVSARFVDPATAR 110

Query: 121 LSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
                 +P+G +  T+ +    A+GG I   D V V M  S   +     + L  +RV  
Sbjct: 111 SQDQGGIPEGMQEVTVLLEPQRALGGHIASGDTVGVFMSFSPPVKNYETHLRLQKVRVTR 170

Query: 179 I---------DHNIDSDERVLVGST----ATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +           +   D       T     +L +    A+ +V A     + L       
Sbjct: 171 VQGTFSNADEGDSATVDSSPSPAPTEAFLVSLAVDVPMAERVVFAAEHGTIWLS------ 224

Query: 226 LNPSSSEDSDVWDVQEEG 243
             P SS ++    V  EG
Sbjct: 225 NEPPSSNEAGASVVSPEG 242


>gi|220913319|ref|YP_002488628.1| SAF domain protein [Arthrobacter chlorophenolicus A6]
 gi|219860197|gb|ACL40539.1| SAF domain protein [Arthrobacter chlorophenolicus A6]
          Length = 242

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 15/190 (7%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
           T  PA  +  L +  DL  G  VT + L  V  P   + +G +      +   E  G  +
Sbjct: 61  TPAPADTVTALSAARDLPAGTAVTASDLVPVRVPPGLLSEGVL------SGQAEAAGKQL 114

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
             P+ KG  +   +L+     GL +  P G  A  + ++ +S++  ++ P   V+VV+  
Sbjct: 115 ATPLRKGQLVTDVQLLGP---GLLTGTPPGSAAVPLRMADASSIQ-LVSPGQLVNVVLTS 170

Query: 159 SLS-ERKPTVTVVLSNIRVIAIDHNIDSDER----VLVGSTATLELTPMQAKALVAAQSV 213
               +++    V+ + + V+          +            +  T  Q+  L  A + 
Sbjct: 171 GNGFDQQGPSEVLAAGVPVLWTATKGGQGGQWLGTAETDGLIVVAATAEQSARLAGASTQ 230

Query: 214 AKLSLVLRSI 223
            KL  VL   
Sbjct: 231 GKLFFVLVGP 240


>gi|325275758|ref|ZP_08141635.1| Flp pilus assembly protein CpaB [Pseudomonas sp. TJI-51]
 gi|324099109|gb|EGB97078.1| Flp pilus assembly protein CpaB [Pseudomonas sp. TJI-51]
          Length = 318

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 33/224 (14%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88
           P                  V++ +  +     +T + +       +    G    V    
Sbjct: 44  PSVATAPAPSAPVEVPRTAVVVLRKSVPANTPLTEDDVLVERL--QVAPAGAYQQVA--- 98

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148
              ++ G     P+  G  +       +  G L+ ++   +RA  + +       G ++P
Sbjct: 99  ---QVIGRSSARPLAAGTWLEEASF--QAGGPLARMIRAHERAVALGVDEVVGAAGQLRP 153

Query: 149 NDHVDVVMVRSLSERKPT--VTVVLSNIRVIAIDHNIDSDERVLVG-------------- 192
            D+VDV++        P     VVL  +RV+++                           
Sbjct: 154 GDYVDVLLFLREEPNNPQASAQVVLPALRVLSVGEQTGLANDGRPAQSADEQKARRDQSG 213

Query: 193 -------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
                   T  + +    A  L+ A     L L +RS  +   +
Sbjct: 214 LGNGAGTRTVAVAVPEAMASRLMLAAQAGTLRLAVRSADEQRLA 257


>gi|325964059|ref|YP_004241965.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470146|gb|ADX73831.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 257

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 15/190 (7%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
           T  P   +  L +  DL+ G  ++P  +  V  P   + DGF+ +        +  G  +
Sbjct: 78  TPAPVSTVTALAAARDLSAGAAISPADVSAVRVPPGMMADGFLQN------AGDAAGKQL 131

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
             P+ KG  +   +L+     GL +  P G  A  + ++  S++  ++ P   V+VV+  
Sbjct: 132 AAPLRKGQLLTDAQLLGP---GLLAGTPPGSAAVPLRMADPSSIQ-LVSPGQLVNVVLTA 187

Query: 159 SLS-ERKPTVTVVLSNIRVIAIDHNIDSDER----VLVGSTATLELTPMQAKALVAAQSV 213
               +++    V+   + V+          +            +     QA  L  A + 
Sbjct: 188 GNGFDQQEPPEVLAEGVPVLWTSTQGGQSGQWLGTSETEGLIVVAANGDQAARLAGASTQ 247

Query: 214 AKLSLVLRSI 223
            KL  VL   
Sbjct: 248 GKLFFVLVGP 257


>gi|296131921|ref|YP_003639168.1| SAF domain protein [Thermincola sp. JR]
 gi|296030499|gb|ADG81267.1| SAF domain protein [Thermincola potens JR]
          Length = 204

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 84/207 (40%), Gaps = 25/207 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   ++ +++S + +  A  + + +V            +   + + ++ +  D+     +
Sbjct: 4   KKIGIIFVILSILLSFGAAYLFLNMVQKTE--------KTMGETVQIITASKDVEAYTPL 55

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T + L +   P + +   F+ +       +E+ G +  VP+ K D I    +    +   
Sbjct: 56  TRDKLSYTEIPRKYLNGSFLTNE------KEVLGKVTLVPMAKNDIITRSMIKKVDD--- 106

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
              LPK  R   +           I+P D VD++   +L  ++    V+ S+I V    H
Sbjct: 107 ---LPKEVRIVQLR-PPVVFDSKEIEPGDRVDIIGTFALDNKQLITQVIQSDIIV----H 158

Query: 182 NIDSDERVLVGSTATLELTPMQAKALV 208
           +I  DE+    S+  L++   +A  L+
Sbjct: 159 DIAMDEKKNEISSLGLQVEIEKALQLI 185


>gi|167815899|ref|ZP_02447579.1| putative fimbriae-assembly related protein [Burkholderia
           pseudomallei 91]
          Length = 166

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 15/155 (9%)

Query: 85  HQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVG 143
                  +L G L+R P+  G P+    ++     G L++ L  G RA ++ I   S   
Sbjct: 1   AAGEPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNA 60

Query: 144 GMIKPNDHVDVVMVRS---------LSERKPTVTVVLSNIRVIAIDHN-----IDSDERV 189
           G+I+P D+VDV++ +            +R      + + +RV+A+         D+ +  
Sbjct: 61  GLIEPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPN 120

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
               T T E++   A+ +     +  LSL LRS A
Sbjct: 121 TRARTVTFEVSSRDAQVITVGAHLGALSLALRSFA 155


>gi|294631139|ref|ZP_06709699.1| flp pilus assembly protein CpaB [Streptomyces sp. e14]
 gi|292834472|gb|EFF92821.1| flp pilus assembly protein CpaB [Streptomyces sp. e14]
          Length = 235

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 91/251 (36%), Gaps = 27/251 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++  +  L A      ++S       +V        +     K D+     
Sbjct: 1   MNSRQRRGVILLLLSVLCALGAFAGVLSVIDDAKSKV-----GPEVTAYQLKTDVKPYTT 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           ++ +  E +  P+  +    + D+ +      + G +    + +G  ++ + +VD+    
Sbjct: 56  LSADQFEKIKMPKRWLSPNAVTDLSR------IRGKIAVTTLRQGSLLQSDMIVDQP--- 106

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIA 178
               L  G++   + I  ++ V G I P   V+V    +   +       ++++  +V+ 
Sbjct: 107 ---ALRPGQQEVAIMIDAATGVAGKITPGSSVNVYATFAGQRQGDPAQSKIIVTGAKVLD 163

Query: 179 IDHNIDSD-------ERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230
           +      D       ++       T  L+ + A+ +  A+S A ++ L L +        
Sbjct: 164 VGRITALDPNSDNRSQQPSEVVPITFALSALDAQRITYAESFAQRVRLALVAPGGDAGVP 223

Query: 231 SEDSDVWDVQE 241
           + D      ++
Sbjct: 224 AGDRTYELAKD 234


>gi|325673440|ref|ZP_08153131.1| hypothetical protein HMPREF0724_10913 [Rhodococcus equi ATCC 33707]
 gi|325555461|gb|EGD25132.1| hypothetical protein HMPREF0724_10913 [Rhodococcus equi ATCC 33707]
          Length = 245

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 78/234 (33%), Gaps = 28/234 (11%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
            TR++  + + V A+   +  +  V     +          + ++VL++   +       
Sbjct: 2   RTRIIAAICAIVLAVAGTLALISYVRGADARAL-----AGTRTVDVLVADQTIPKNTPAD 56

Query: 63  P--NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
               ++     PE  V         +  ++ +L G +    +L G+ +   +  D     
Sbjct: 57  SLVGMVVVKKLPEMAVLP------ERVTSLDQLSGKVALTDLLPGEQLVSARFADPATAR 110

Query: 121 LSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
                 +P+G +  T+ +    A+GG I   D V V M  S   +     + L  +RV  
Sbjct: 111 SQDQGGIPEGMQEVTVLLEPQRALGGHIASGDTVGVFMSFSPPVKNYETHLRLQKVRVTR 170

Query: 179 I---------DHNIDSDERVLVGST----ATLELTPMQAKALVAAQSVAKLSLV 219
           +           +   D       T     +L +    A+ +V A     + L 
Sbjct: 171 VQGTFSNADEGDSATVDSSPSPAPTEAFLVSLAVDVPMAERVVFAAEHGTIWLS 224


>gi|254506045|ref|ZP_05118189.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16]
 gi|219550863|gb|EED27844.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16]
          Length = 267

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 111/275 (40%), Gaps = 26/275 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++ +    V A++ G+  +         +  + T  P KF +V   +  ++   V
Sbjct: 1   MRTKLILAVA---VLAIIFGLYGLAGNLTRPTDSSSLQTAQPLKFYSVWQVRSQVSATDV 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           V P  L+ +   E+   D  +  + +    +   G + R  + +G  +    +V   +  
Sbjct: 58  VRPEHLQVLKIQED---DAALQGIAEDMLFEYPLGSIYRSDMAEGSLLYPTDIVAPNSPE 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM--------------VRSLSERKP 165
            L   L  G     + +S  + VGG+I+ + ++D++                 +   +  
Sbjct: 115 YLDLTLADGYVPYPLKVSPEAVVGGVIRASSYIDILALTSPTNVATIEVGSSATARGKAI 174

Query: 166 TVTVVLSNIRVIAIDHN---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
           +++ VL  ++V+ +D +     + E V + +   LEL   Q   L  A+ +A L  V +S
Sbjct: 175 SISPVLMGVKVLRVDQSDAKEATGEDVALETHLILELDRKQVSILSVAKQIATLE-VHKS 233

Query: 223 IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
           + +  P+    +D  DV    K +   +A  +  K
Sbjct: 234 VGNYRPADLS-ADAGDVLPGFKSVIEYRADAVTIK 267


>gi|295395660|ref|ZP_06805852.1| flp pilus assembly protein CpaB [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971476|gb|EFG47359.1| flp pilus assembly protein CpaB [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 259

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 83/235 (35%), Gaps = 40/235 (17%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +  G+++     L+A ++ + +V        + ++        V ++K D+     
Sbjct: 1   MNPKQRRGLLLMIAATLLAIMVFIAVV-----VYVQNVSSKVGPTTEVYVAKEDITAFQP 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  ++LE    P   + +  +       +++++ G    V I  G  I+ + +       
Sbjct: 56  IEQDMLETKTVPNRYITEDMVT------SLEQVAGQKASVKISAGSFIQTDAIEP----- 104

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV----------- 169
            +S +  G+R  ++     + V G + P D VDVV   + +                   
Sbjct: 105 -ASSIEDGQREISITFVGDAGVSGRVSPGDKVDVVASFARARENDQGETAYKRADIPYNV 163

Query: 170 ---VLSNIRVIAIDH---------NIDSDERVLVGSTATLELTPMQAKALVAAQS 212
              V+SN  V+++             D           T  ++  +A  L  A++
Sbjct: 164 SGIVVSNATVVSVGQPVDPNAVVGAADQSGAEAEAVAVTFAVSVEEAGRLSYAEA 218


>gi|239929205|ref|ZP_04686158.1| hypothetical protein SghaA1_13346 [Streptomyces ghanaensis ATCC
           14672]
          Length = 235

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 77/205 (37%), Gaps = 23/205 (11%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +     K ++A    ++    E +  PE  + +  + D      ++E+ G +
Sbjct: 33  VKSKVGPEVTAYRLKTNVAPYSTLSAGQFEKIKMPERWLSENAVTD------LREIRGKI 86

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               + +G  ++ + +VD+        L  G++   + I  ++ V G I P   V+V   
Sbjct: 87  AVTTLREGSLLQSDMVVDQP------ALQPGQQEVAIMIDAATGVAGKITPGSTVNVYAT 140

Query: 158 RSLSERK--PTVTVVLSNIRVIAID-------HNIDSDERVLVGSTATLELTPMQAKALV 208
                        ++++N +V+ +           D   R       T  L+ + A+ + 
Sbjct: 141 FEGEREGAAAQSKIIVTNAKVLDVGRLTALEPDEEDRGRRPTDAVPITFALSTIDAQRIT 200

Query: 209 AAQSVA-KLSLVLRSI-ADLNPSSS 231
            A+S A ++ L L +   D +   S
Sbjct: 201 YAESFAQRVRLALVAPGGDTSVPDS 225


>gi|323495636|ref|ZP_08100707.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326]
 gi|323319271|gb|EGA72211.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326]
          Length = 268

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 106/276 (38%), Gaps = 27/276 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   ++GI    V A+V G+  +          + V    PAK I+V     D+    V
Sbjct: 1   MRTKLILGIA---VVAIVFGLYGLAGNLTESKAPQLVEKNKPAKLISVWQLNSDVPSAEV 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           V PN L+ V   EE      I +           G + R  +  G  +    +V   +  
Sbjct: 58  VRPNQLKIVKLSEEQAAAIGISEDMLFEYPP---GSIFRSDMKVGTTLFATDIVAPNSPE 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---------------ERK 164
            L   L  G     + +S  + VGG+I+ + +VDV+ + S                  R 
Sbjct: 115 YLDLTLSDGFVPYPLKVSPDAVVGGVIRASSYVDVLALTSPEHLVSVEVNSSDSVARGRA 174

Query: 165 PTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT---LELTPMQAKALVAAQSVAKLSLVLR 221
            +++ VL  ++V+ ++   +   +    +  T   LEL   Q   L  A+ ++ L  V +
Sbjct: 175 VSISPVLMGVKVLRVEQTFEEGAQEAGVAPDTHLILELDRKQVSILSVAKQISSLE-VHK 233

Query: 222 SIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
           S+ D   S    +D  DV    K +   +A  +  K
Sbjct: 234 SVGDYAASELH-ADAGDVLPGFKSVIEYRAETVTIK 268


>gi|291437538|ref|ZP_06576928.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340433|gb|EFE67389.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 203

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 76/203 (37%), Gaps = 23/203 (11%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
                 +     K ++A    ++    E +  PE  + +  + D      ++E+ G +  
Sbjct: 3   SKVGPEVTAYRLKTNVAPYSTLSAGQFEKIKMPERWLSENAVTD------LREIRGKIAV 56

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
             + +G  ++ + +VD+        L  G++   + I  ++ V G I P   V+V     
Sbjct: 57  TTLREGSLLQSDMVVDQP------ALQPGQQEVAIMIDAATGVAGKITPGSTVNVYATFE 110

Query: 160 LSERK--PTVTVVLSNIRVIAID-------HNIDSDERVLVGSTATLELTPMQAKALVAA 210
                      ++++N +V+ +           D   R       T  L+ + A+ +  A
Sbjct: 111 GEREGAAAQSKIIVTNAKVLDVGRLTALEPDEEDRGRRPTDAVPITFALSTIDAQRITYA 170

Query: 211 QSVA-KLSLVLRSI-ADLNPSSS 231
           +S A ++ L L +   D +   S
Sbjct: 171 ESFAQRVRLALVAPGGDTSVPDS 193


>gi|210629922|ref|ZP_03296169.1| hypothetical protein COLSTE_00052 [Collinsella stercoris DSM 13279]
 gi|210160739|gb|EEA91710.1| hypothetical protein COLSTE_00052 [Collinsella stercoris DSM 13279]
          Length = 258

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 79/226 (34%), Gaps = 19/226 (8%)

Query: 28  SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87
                   E + +   + ++V ++  D+  G  +         +    +    +      
Sbjct: 37  QEAERARRETLEQYGGELVSVCVATRDIDPGEQIDDGNAVVTEWVSTLLPAEAVT----- 91

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
            ++ ++ G      I    P+             +  +P+GK A ++      AVGG+++
Sbjct: 92  -SLADVAGRTATARIPAHAPLSEAYF---EQRESAVDVPRGKVAVSVASDAEHAVGGVLE 147

Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL 207
             D VDV +       K      L++  VI           V      TL + P   + L
Sbjct: 148 RGDLVDVYVQGDALADK------LTDAEVIDTSALASGSGDVQ---WVTLAVRPSAVREL 198

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDS-DVWDVQEEGKEIQIIKAG 252
           +AA S   ++L + +  +     S+D+ +  D +  G E     +G
Sbjct: 199 LAAASRGMVTLAVPAEQEDGDRDSDDAEEKSDAKTPGDEASAESSG 244


>gi|257784838|ref|YP_003180055.1| SAF domain-containing protein [Atopobium parvulum DSM 20469]
 gi|257473345|gb|ACV51464.1| SAF domain protein [Atopobium parvulum DSM 20469]
          Length = 275

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 82/226 (36%), Gaps = 24/226 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN----PAKFINVLISKGDLA 56
           M     + I V  + AL+A       V     + E+   E       +  ++L++   + 
Sbjct: 1   MTKKTRILISV--LSALLASFCFFAYVQSVRAEAEKSRAEAIQKYGGELTSILVATKQIE 58

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G  ++ +  +  ++  + + +G I +       + + G  V   I  G P+    L   
Sbjct: 59  PGETLSSSNTQVKSWISDLIPEGAITNP------ESVMGRTVSSVIGVGMPVVSLHLRSV 112

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
            +      +P+     T+       +   +     +    V         +T + S+I V
Sbjct: 113 ASQI---TIPENLIGLTISHGEKYGLAERLSAGTKLAAYEVTD-----SLITCIASDISV 164

Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
           +    + D++  +   S+ TL LTP Q  A+++A +   L   L  
Sbjct: 165 L----SDDAEGTLYTSSSVTLGLTPEQVPAVLSAYARGTLRFTLPG 206


>gi|255316487|ref|ZP_05358070.1| hypothetical protein CdifQCD-7_19162 [Clostridium difficile
           QCD-76w55]
          Length = 259

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 77/241 (31%), Gaps = 48/241 (19%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   L+   +  +FA    +                 T++  K + V     ++    V+
Sbjct: 7   KANILLQFSLFILFAGGVFLF----------------TQSQVKPVAVYQYSRNIPENTVI 50

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GG 120
                     P++ +    I +       ++++G ++   + + +      L D      
Sbjct: 51  QKGDYIKTFKPKDILTKSMITNE------KDINGKILTTNVYRSEYAIKNNLEDPAKLDE 104

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-------TVVLSN 173
            + +     R  ++ + +  AVGG +K  D VD+  V+    +              + +
Sbjct: 105 FAKIDLSNLRKVSIPVEMKDAVGGNLKKGDRVDLTFVKQGDSKNNDTSDSFTYAKTFMQD 164

Query: 174 IRVIAI-------------DHNIDSDERVLVGST-----ATLELTPMQAKALVAAQSVAK 215
           + V  +                  ++E+  V  +      T+ +T  QA+ + A      
Sbjct: 165 VLVYNVVDDGGKKYVDQTEGTQSLANEKGEVVESGSLSIVTVAVTAQQAEEIYARHKDGD 224

Query: 216 L 216
           +
Sbjct: 225 I 225


>gi|302558701|ref|ZP_07311043.1| flp pilus assembly protein CpaB [Streptomyces griseoflavus Tu4000]
 gi|302476319|gb|EFL39412.1| flp pilus assembly protein CpaB [Streptomyces griseoflavus Tu4000]
          Length = 235

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 22/214 (10%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +     K D+A    ++    E +  PE  +    + D+        +   +
Sbjct: 33  VESKVGPEVTAYRLKTDVAPYTPLSTGQFEKIKMPERWLSKNAVTDLAG------IRDKI 86

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               + +G  ++ + +VDR        L  G++   + I  ++ V G I P   V+V   
Sbjct: 87  AVTGLREGSLLQSDMIVDRP------ALRPGQQEVAIMIDAATGVAGKITPGSTVNVYAT 140

Query: 158 RSLSERK--PTVTVVLSNIRVIAID-------HNIDSDERVLVGSTATLELTPMQAKALV 208
                        V+++N RV+ +           D           T  L+ + A+ + 
Sbjct: 141 FEGEREGDPDQSRVIVTNARVLDVGRLTALRPDENDRGREPTDAVPITFALSAIDAQRIT 200

Query: 209 AAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQE 241
            A+S A ++ L L +                 ++
Sbjct: 201 YAESFAQRVRLALVAPGTDTTVPDSQRTYELAKD 234


>gi|167570106|ref|ZP_02362980.1| Flp pilus assembly protein CpaB family [Burkholderia oklahomensis
           C6786]
          Length = 168

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 26/180 (14%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   L  G  +  + L+    P      G   +         + G +    I+   
Sbjct: 1   PVVVATRALPTGQPIPADALKVQQMPASIA--GAFSNPAL------VTGRIPASDIVAQA 52

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------V 157
           P+   +L+     GL+  +  G+RA  + +  ++AVG  ++P + VDV +          
Sbjct: 53  PVLENELM----SGLADQIAPGERAVAIKVDDTNAVGNRLRPGNFVDVFVNMKRESSFGT 108

Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQS 212
                 +    ++LS +RV++        +           TA L +   Q  AL  A++
Sbjct: 109 TGSEISQSQARLLLSRVRVLSFGDATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEA 168


>gi|29829798|ref|NP_824432.1| hypothetical protein SAV_3256 [Streptomyces avermitilis MA-4680]
 gi|29606907|dbj|BAC70967.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 209

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 24/216 (11%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +     + D+A    ++ +  E V+ P   +    + D      + ++ G +
Sbjct: 5   VNSKVGPEVAAYRLRNDIAPYKELSADQFEKVSMPRRWLSKTAVTD------LAQIRGKI 58

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               + KG  ++ + +VDR        L  G++   + I  S+ V G I P   V++   
Sbjct: 59  AVTQLEKGSLLQTDMIVDRP------ALAAGQQEIAIMIDASTGVAGKINPGSRVNIYAT 112

Query: 158 RSL--SERKPTVTVVLSNIRVIAID---------HNIDSDERVLVGSTATLELTPMQAKA 206
                 + K    V++ N RV+ +           +             T  L    A+ 
Sbjct: 113 FKAPSDKGKDQSKVIVENARVLDVGKLTALDPGQSSDQRRRTASEAVPITFALDTADAQR 172

Query: 207 LVAAQSVAK-LSLVLRSIADLNPSSSEDSDVWDVQE 241
           +  A+S A+ + L L +          D      ++
Sbjct: 173 VAYAESFAEHVRLALVAGGSGTTVPPGDRSYTLDED 208


>gi|313835706|gb|EFS73420.1| Flp pilus assembly protein CpaB [Propionibacterium acnes HL037PA2]
 gi|314928377|gb|EFS92208.1| Flp pilus assembly protein CpaB [Propionibacterium acnes HL044PA1]
 gi|314970229|gb|EFT14327.1| Flp pilus assembly protein CpaB [Propionibacterium acnes HL037PA3]
 gi|328908042|gb|EGG27801.1| Flp pilus assembly protein CpaB [Propionibacterium sp. P08]
          Length = 242

 Score = 87.1 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 98/257 (38%), Gaps = 31/257 (12%)

Query: 1   MKLTR---LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           M   +   L+ ++++ V A+   +   R V+  + Q            + V  +K  ++ 
Sbjct: 1   MNPRQRRGLIYLLIAVVVAIATFLTVTRYVASVNSQV--------GSRVTVYRAKTAISP 52

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
              ++ ++LE V  P                ++  L G  +   +  G  I  + L+   
Sbjct: 53  YTPLSDSVLEPVEVPRRW------TSDSSMVSLSSLRGRRIGFRVEAGTVITRDMLIAPS 106

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-TVVLSNIRV 176
           +      L   +R   ++++  + V G +KP D VD+  V +     P    V+  N RV
Sbjct: 107 D------LNPDEREIAINVNSVTGVAGRVKPGDRVDIYAVFADVPGLPKSVRVLTRNTRV 160

Query: 177 IAIDHNIDSDERVLVGST------ATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPS 229
           ++I   ++   +   G T       TL LTP  A A+  A + AK + LV          
Sbjct: 161 VSIAGKMNISGQSGNGVTETEVIPVTLALTPNDATAVTYAAAFAKEVRLVALPTDAGANR 220

Query: 230 SSEDSDVWDVQEEGKEI 246
           + E ++       G+ +
Sbjct: 221 NGEKNEYDASSLGGRAV 237


>gi|307295324|ref|ZP_07575163.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
 gi|306878827|gb|EFN10046.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1]
          Length = 301

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 88/248 (35%), Gaps = 35/248 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEE------VITENPAKFINVLISKGD 54
           M+L     + +          +A+ +                   +  A  + ++ +   
Sbjct: 1   MRLGLKAKLTIGVGLTAATAFLALGVRELRKASAATGENRVTAPAKVAAPTVLLVQAARA 60

Query: 55  LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114
           +  G  +T +++   A                     E+ G +    I     I  + + 
Sbjct: 61  IRTGETITADMIRNAAGDPARFPQAA--------TSAEVVGKVATRDIAMRALIARDAVG 112

Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPT 166
              N  L+  +P G RA ++D +   AV G+++P D VDV +V   ++         +  
Sbjct: 113 VESN--LAMRVPMGMRAVSIDTTAEIAVAGLVRPGDRVDVQVVYPGADAISGARGAGRSR 170

Query: 167 VTVVLSNIRVIAIDHNIDSDERVL-----------VGSTATLELTPMQAKALVAAQSVAK 215
              +L  ++V+A+   +    +                T TL LTP Q  AL  A+++  
Sbjct: 171 AQALLQMVQVLAVGEVVVGARQASGVEGALASPPLPARTVTLALTPEQVSALSLAKNIGA 230

Query: 216 LSLVLRSI 223
           L+L LR+ 
Sbjct: 231 LTLSLRNP 238


>gi|293606492|ref|ZP_06688850.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815115|gb|EFF74238.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 198

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 66/204 (32%), Gaps = 24/204 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK---------FINVLIS 51
           M     +   V  V  LV   +A RL +              A             V+++
Sbjct: 1   MSSLSKIIAGVLLVAGLVLAFLAWRLATHSSAPPASPTPVATAPAPAAPAPVTLHPVVVA 60

Query: 52  KGDLAVGMVVTP-NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           K  +  G  +   N+L    +             +  N    L+G + RV I  GDPI  
Sbjct: 61  KQAIPAGTRIDAQNMLTVAQWQAAL--------SNSFNTPDPLEGAVARVDIAAGDPIVP 112

Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVT 168
             L      GL+  L  G+RA  + +      G  I P D VDV  +    +        
Sbjct: 113 SLLAQ----GLAKQLKPGERAVAIAVDEVIGGGNRIAPGDLVDVFFMVEKGQEISGGQAR 168

Query: 169 VVLSNIRVIAIDHNIDSDERVLVG 192
           ++ S +RV+A   +          
Sbjct: 169 LLQSQLRVLAYGKSSVDGPEEKSV 192


>gi|229816461|ref|ZP_04446762.1| hypothetical protein COLINT_03515 [Collinsella intestinalis DSM
           13280]
 gi|229808003|gb|EEP43804.1| hypothetical protein COLINT_03515 [Collinsella intestinalis DSM
           13280]
          Length = 226

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 88/236 (37%), Gaps = 22/236 (9%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN----PAKFINVLISKGDLAVG 58
           + R + + +S V  L A ++A   V+  H + E+               V ++  ++  G
Sbjct: 1   MKRTVRLGLSAVMGLSAALLAWSAVAGAHAEAEQASRRALERYGGDVTRVCVALREIEPG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             ++   ++ V +    + +  +       +M +  G++    I    P+     +    
Sbjct: 61  DEISEGNVKVVEWVSSLMPEDALT------SMGDASGLVATARIPAHTPLAKAHFLRDER 114

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
                 +P+G  A ++      AVGG +   D VDV +  +    +      L+   V+ 
Sbjct: 115 ---VVQVPRGTVAISVASDAEHAVGGSLARGDEVDVYVADASVADR------LTRAEVLD 165

Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
                D    +   S  TL +     + ++AA +  +++LVL   +    ++  + 
Sbjct: 166 TSVLADGGGDL---SWVTLAVDASAVRDVLAATTRGEVTLVLPGASASREAARSER 218


>gi|156975625|ref|YP_001446532.1| hypothetical protein VIBHAR_03358 [Vibrio harveyi ATCC BAA-1116]
 gi|156527219|gb|ABU72305.1| hypothetical protein VIBHAR_03358 [Vibrio harveyi ATCC BAA-1116]
          Length = 204

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 76/196 (38%), Gaps = 22/196 (11%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVIT------ENPAKFINVLISKGDLAVGMVVT 62
           +V + +  LV GI     ++ H  Q    ++      E  A ++ V  +K +L  G  + 
Sbjct: 1   MVFALLALLVGGIGIYSHMTAHPQQQNPTVSQSSNSDEPQAHYVQVWRAKSNLERGTPIE 60

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP-IRLEKLVDRGNGGL 121
            + ++          +  I+   + +        L+   I  G       ++ +     +
Sbjct: 61  IDDVQKEQMLLNIALEEGINSDIKLDFSPS---TLLSKNIEAGKIVFSEYQVKENDPRYI 117

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTVTV 169
             L+ +GK   ++ +S  + V G I+P  +VDV+ V S  E                  +
Sbjct: 118 DLLITEGKEPYSLLVSTRNLVKGYIRPGTNVDVLSVGSPKENLADEDTDAIDFSGVNAQL 177

Query: 170 VLSNIRVIAIDHNIDS 185
           +L N++V+++ +  + 
Sbjct: 178 ILRNVKVLSVGNTKEP 193


>gi|254429646|ref|ZP_05043353.1| Flp pilus assembly protein CpaB [Alcanivorax sp. DG881]
 gi|196195815|gb|EDX90774.1| Flp pilus assembly protein CpaB [Alcanivorax sp. DG881]
          Length = 278

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 88/245 (35%), Gaps = 25/245 (10%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--------NPAKFINVLISKGDLAVGMV 60
           ++ +   ALVA I+A+  +S        V  E          A      +    L VG  
Sbjct: 1   MLPALAVALVALILALVGLSRDPTPALVVKDEGADTASSTQEAPSYRYWVVTQSLNVGDT 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    L  V+ P            +   A + + G  +R     G+ +    L     G 
Sbjct: 61  LDEESLAVVSSPAPIA--------NVLTADETVVGKELRQFARPGELLSRNHL--EPGGT 110

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV-LSNIRVIAI 179
           L   LP G RA  + +      GG+++P D VDVV+     ER     +V L NI+V+A+
Sbjct: 111 LPGALPTGFRAVGVAVDDVVMAGGLLQPGDLVDVVVAFRKVERDNPAALVLLRNIQVLAV 170

Query: 180 ------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
                   +    E     +T  L +   +   L+ A     + L + +  D + +    
Sbjct: 171 KGAMAAASSEQDREAQRRNNTVVLAVPRDKVPPLLLAAEEGSMRLAVVASDDKDTNKEAV 230

Query: 234 SDVWD 238
           +   D
Sbjct: 231 ASASD 235


>gi|116671413|ref|YP_832346.1| hypothetical protein Arth_2867 [Arthrobacter sp. FB24]
 gi|116611522|gb|ABK04246.1| hypothetical protein Arth_2867 [Arthrobacter sp. FB24]
          Length = 213

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 27/219 (12%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           +VV+ +    AGI   +L            T  PA  +  L +  DLA G  ++ N +  
Sbjct: 14  LVVALLLCAAAGIAVQQL------------TPAPAHTVTALATARDLAAGTALSGNEVVP 61

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128
           V  P   V  G + DV        + G  +  P+ KG  I   +L+     GL +    G
Sbjct: 62  VKVPPGMVPSGAVADVSS------IQGKQLAAPLRKGQLISDTQLLGP---GLLAGTKPG 112

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAI-DHNIDSD 186
             A  + ++  S++  ++ P   V++VM       +     V+ + + V+        + 
Sbjct: 113 SAAVPLRMADPSSIQ-LVAPGQLVNIVMTNGTDFGKTAESQVLAAAVPVLWTSGQGGQTG 171

Query: 187 ERVLVGST---ATLELTPMQAKALVAAQSVAKLSLVLRS 222
           + +  G T     +   P QA+ L  + +  KL  VL  
Sbjct: 172 QWLGTGETEGLIVVAADPDQARRLAGSSTQGKLFFVLVG 210


>gi|269216235|ref|ZP_06160089.1| Flp pilus assembly protein CpaB [Slackia exigua ATCC 700122]
 gi|269130494|gb|EEZ61572.1| Flp pilus assembly protein CpaB [Slackia exigua ATCC 700122]
          Length = 255

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 76/204 (37%), Gaps = 16/204 (7%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79
                +L S    +  E++     + + V ++  D+AVG  ++        +    + D 
Sbjct: 2   AAYGNQLESAVADERAEMLERFGGEQVEVRVATRDIAVGERLSDANSTSQLWLSALLPDQ 61

Query: 80  FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139
            + D        ++ G  V  PI +G+ +  ++  +     L   +P G  A ++     
Sbjct: 62  AVID------AGDVAGRSVTTPIFEGEVVCAQRFDETEEKPL--QVPDGMCAVSVPADTL 113

Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI---AIDHNIDSDERVLVGSTAT 196
           ++VGG + P   VDV           +  ++  ++ V+   A      S       S  T
Sbjct: 114 ASVGGSVAPGALVDVYTS-----SGSSTDLLAQSVLVLSTSASGQASASPAASSPLSWVT 168

Query: 197 LELTPMQAKALVAAQSVAKLSLVL 220
           L + P + +  VAA    +L   L
Sbjct: 169 LAVAPDRVEEFVAAAQRTELYFTL 192


>gi|148556417|ref|YP_001263999.1| Flp pilus assembly protein CpaB-like protein [Sphingomonas
           wittichii RW1]
 gi|148501607|gb|ABQ69861.1| Flp pilus assembly protein CpaB-like protein [Sphingomonas
           wittichii RW1]
          Length = 293

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 84/249 (33%), Gaps = 33/249 (13%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVGMVV 61
              + +V   +FAL+  I+  R +          +             I+   +  G  +
Sbjct: 5   RAKITVVAGLLFALLFVILGFRELGRPSPSRPLPVAAIVESGPPAAFAIAARRIETGETL 64

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           +P+++     P+               +  E  G +   PI       + +        L
Sbjct: 65  SPDLVRNGPAPKALQAATA--------SPAEAVGKVATQPIAA--GAAIPRAAIAAEDKL 114

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTVVLSN 173
           +  +P G RA ++D +   AV G+++P D VD+ +V   ++               +L  
Sbjct: 115 ALRVPVGMRAISIDTTSEIAVAGLVRPGDRVDIQVVYPGTDAIAGLRGPGGSQAATLLQM 174

Query: 174 IRVIAIDHNIDSDE-------------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           + V+A+   +                 +       TL LTP     L  A++   + L L
Sbjct: 175 VEVLAVGQVVIGSGPANEDKSVSSFESQPPQARNVTLALTPADVSTLSLAKARGAIYLSL 234

Query: 221 RSIADLNPS 229
           R+ AD    
Sbjct: 235 RNPADRELV 243


>gi|119717338|ref|YP_924303.1| SAF domain-containing protein [Nocardioides sp. JS614]
 gi|119537999|gb|ABL82616.1| SAF domain [Nocardioides sp. JS614]
          Length = 244

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 90/240 (37%), Gaps = 28/240 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   RL+ +  + V AL   ++ +        +  +   E+  + ++VL++   +A G  
Sbjct: 1   MDRRRLLIVAAALVAALGTVLVVVY------ARGADQRAEDRFESVDVLVATQPIAAGET 54

Query: 61  VTP----NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           V      + +   +    +  DG +  +          G +  VPI  G+ +   KL   
Sbjct: 55  VEAARAADKIGTRSVALRDRLDGALTSLDGH------AGQVALVPIQPGEQLLPAKLGSS 108

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-SLSERKPTVTVVLSNIR 175
                   +P G+ A +++++ ++ V G + P   V V +        +    ++LS + 
Sbjct: 109 SEAAAPLPIPPGQMAVSVNLTDAARVSGFLNPGSEVAVFLNGVDQQTGQTFTRLLLSRVT 168

Query: 176 VIAIDHNI-----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
           V+ +                     L  +  T+ +   QA+ ++ A S  +L+  L +  
Sbjct: 169 VLGVGSTAPVATTTTDDTGAQTVEQLPRTLLTIAVDQKQAQKVLFASSNGELAFALLNPD 228


>gi|86147183|ref|ZP_01065499.1| hypothetical protein MED222_18941 [Vibrio sp. MED222]
 gi|85835067|gb|EAQ53209.1| hypothetical protein MED222_18941 [Vibrio sp. MED222]
          Length = 262

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 84/260 (32%), Gaps = 17/260 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++G+    +   + G++      P      +           V         G  
Sbjct: 1   MNSKIILGLAFLAISIGLYGVV----NVPMDTFPIQPEEPIIEVTFKVWKLTHPTVKGQQ 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +  +       PE       +  + +   +           I   + +    L   G+  
Sbjct: 57  LKRSDFVIEYLPEARA---ALLGIDRNIELDWNAPQFAVHDIAAYELVDSNMLTSPGDSQ 113

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV-----LSNI 174
            L +++  G     + +     +GG I   D VD+ ++ +  +   +   V     L+ +
Sbjct: 114 YLQAVIRPGFVPYNVTVPGRDVLGGTIAVGDLVDISVLSTPDQNLSSEDTVSDIQHLTMV 173

Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA--QSVAKLSLVLRSIADLNPSSSE 232
            ++A    +D        ST TLE    Q   ++    Q +A+L++  R IA++    S 
Sbjct: 174 PLLAQIPVLDMVTSEKAVSTLTLE-KETQVTLILQVTNQQLAQLTVAQR-IAEVAVHKSL 231

Query: 233 DSDVWDVQEEGKEIQIIKAG 252
             +  D  E      I  +G
Sbjct: 232 GKEFSDDLEADSSDIIPSSG 251


>gi|218848027|ref|YP_002454867.1| hypothetical secreted protein [Bacillus cereus G9842]
 gi|218546158|gb|ACK98551.1| hypothetical secreted protein [Bacillus cereus G9842]
          Length = 303

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 84/255 (32%), Gaps = 53/255 (20%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M L     I  +   A+VAG+     +           TE+  K + V+++K D+A    
Sbjct: 1   MNLASKKVIAGTAAIAVVAGVWGYSYMQ----------TESKIKPVKVVVTKQDIAPHTK 50

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T +++    FP   +         +       DG      I     +   KL       
Sbjct: 51  ITADMIAEKEFPVSGIPPKTALKKEEVLGKWTKDGY----GIAANSYMNSTKLAKEEELT 106

Query: 121 LSSLLP--KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN----- 173
            + ++   +G+ A T+ + I ++ G  I PN +VD+ +  +L   K    V + N     
Sbjct: 107 DAGVISLKEGEHAFTLPVDIETSNGNAIVPNTYVDLYLAANLDAEKLGQAVGIQNLEKKF 166

Query: 174 --------------IRVIAIDHNIDSDE------------------RVLVGSTATLELTP 201
                         +RVI++     +D                           T+ +  
Sbjct: 167 ISPTVKYFGLAAKKVRVISVKDGNTTDVFNALPNTENADGSKPSNIDRRQARLYTIAVNK 226

Query: 202 MQAKALVAAQSVAKL 216
              + L  A+ +  +
Sbjct: 227 ETLQILNKAKLIGNV 241


>gi|299889217|dbj|BAJ10317.1| hypothetical protein [Streptomyces lavendulae subsp. lavendulae]
          Length = 233

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 74/212 (34%), Gaps = 20/212 (9%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +     KGD+A    ++    E V  P+  + D  + D      +  L G +
Sbjct: 33  VNSKVGAEVVAYRVKGDIAPYSALSAGQFEEVKVPKRWLSDTAVSD------LGSLQGKI 86

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               + KG  ++ +  VD+        L  G++   + I  ++ V G I     V+++  
Sbjct: 87  ALTTLKKGSLLQSDMFVDKP------QLQPGEQEIAIMIDAATGVAGKITSGAKVNIIAT 140

Query: 158 RSLSERKPTVT--VVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAA 210
              ++        ++++N RV+ +            +        T  L     + +  A
Sbjct: 141 FKGAKETDPSRSVIIVANARVLGVGKLTALDKDGDKKGPAEAVPITFALNTKDTQRVAYA 200

Query: 211 QSVAK-LSLVLRSIADLNPSSSEDSDVWDVQE 241
           +S A+ + L L +    +  S  D       +
Sbjct: 201 ESFAEHVRLALVAPGTDSAPSPTDRTYTLDGD 232


>gi|228989141|ref|ZP_04149159.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228770568|gb|EEM19115.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 303

 Score = 85.6 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 83/255 (32%), Gaps = 53/255 (20%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M L     I  +   A+VAG+     +           TE+  K + V+++K D+A    
Sbjct: 1   MNLASKKVIAGTAAIAVVAGVWGYSYMQ----------TESKIKPVKVVVTKQDIAPHTK 50

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T +++    FP   +                 DG      I     +   KL       
Sbjct: 51  ITADMIAEKEFPVSGIPPKTALKKEDVLGKWTKDGY----GIAANSYMNSTKLAKEEELT 106

Query: 121 LSSLLP--KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN----- 173
            + ++   +G+ A T+ + I ++ G  I PN +VD+ +  +L   K    V + N     
Sbjct: 107 DAGVISLKEGEYAFTLPVDIETSNGNAIVPNTYVDLYLAANLDAEKLGQAVGIQNLEKKF 166

Query: 174 --------------IRVIAIDHNIDSDE------------------RVLVGSTATLELTP 201
                         +RVI++     +D                           T+ +  
Sbjct: 167 ISPTVKYFGLAAKKVRVISVKDGNTTDVFNALPNTENADGSKPSNIDRRQARLYTIAVNK 226

Query: 202 MQAKALVAAQSVAKL 216
              + L  A+ +  +
Sbjct: 227 ETLQTLNKAKLIGNV 241


>gi|194366096|ref|YP_002028706.1| Flp pilus assembly protein CpaB [Stenotrophomonas maltophilia
           R551-3]
 gi|194348900|gb|ACF52023.1| Flp pilus assembly protein CpaB [Stenotrophomonas maltophilia
           R551-3]
          Length = 345

 Score = 85.6 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 84/271 (30%), Gaps = 52/271 (19%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           KLTR+  + + G+  L+A +  M    P+   T   + ++ A+ I V+ S   L  G  +
Sbjct: 3   KLTRIAAVALIGLAVLLALVAFMIGRKPNAPATVAPVAQSEAQAITVVESVARLPAGEPI 62

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T N L                      ++  + G +    I +G  I    L      G 
Sbjct: 63  TANGLRLAQRTAPVA--------GAATSIASVVGKVPVQDIAEGTAISSSALAQ----GF 110

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----------------VRSLSERK 164
           S  L  G+RA  + +      G  I P D VDV +                  R L  R 
Sbjct: 111 SLQLRPGERALAVPVDELVGAGNRILPGDFVDVFLNLRNAQPNASGPGEAAQTRLLLSRL 170

Query: 165 PTVTVVLSNIRVIAIDHNIDSDERVL-----------------------VGSTATLELTP 201
             ++    +I     D    ++                              +A L +  
Sbjct: 171 RVLSYGQQDIAPATSDAVASNEGDNRNDPRAADITGSGSSHTTSSETTQPARSAVLAVPV 230

Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
             A  L+      KL L LR+ AD       
Sbjct: 231 ADANRLLLGAQQGKLFLALRNPADTGLPDLA 261


>gi|254522254|ref|ZP_05134309.1| Flp pilus assembly protein CpaB [Stenotrophomonas sp. SKA14]
 gi|219719845|gb|EED38370.1| Flp pilus assembly protein CpaB [Stenotrophomonas sp. SKA14]
          Length = 343

 Score = 85.2 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 77/269 (28%), Gaps = 50/269 (18%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           KLTR+  + + G+  L+A I  M    P        +     + I V+ +   L  G  +
Sbjct: 3   KLTRIAAVALIGLAVLLAVIALMIGRKPDAPVHVAPVASADPQAITVVEAVARLPAGEPI 62

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T N L                      +M  + G +    I +G  I    L      G 
Sbjct: 63  TANGLRLAQRTTPVA--------GAATSMSTVVGKVPVQDIAEGSAISTSALAQ----GF 110

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------------------------ 157
           S  L  G+RA  + +      G  I P D VDV +                         
Sbjct: 111 SLQLRPGERALAVPVDELVGAGNRILPGDFVDVFLNLRTAQPSAGGPGEAAQARLLLSRL 170

Query: 158 --------------RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203
                            +          +    I  + +  SDE      +A L +    
Sbjct: 171 RVLSYGQQDIAPNPGDTAASTDGSERNDARAADITGNSHGASDETRQPARSAVLAVPVAD 230

Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSE 232
           A  L+      KL L LR+ AD       
Sbjct: 231 ANRLLLGAQQGKLFLALRNPADTGLPDLA 259


>gi|228949326|ref|ZP_04111589.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810309|gb|EEM56667.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 303

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 83/255 (32%), Gaps = 53/255 (20%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M L     I  +   A+VAG+     +           TE+  K + V+++K D+A    
Sbjct: 1   MNLASKKVIAGTAAIAVVAGVWGYSYMQ----------TESKIKPVKVVVTKQDIAPHTK 50

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T +++    FP   +                 DG      I     +   KL       
Sbjct: 51  ITADMIAEKEFPVSGIPPKTALKKEDVLGKWTKDGY----GIAANSYMNSTKLAKEEELT 106

Query: 121 LSSLLP--KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN----- 173
            + ++   +G+ A T+ + I ++ G  I PN +VD+ +  +L   K    V + N     
Sbjct: 107 DAGVISLKEGEYAFTLPVDIETSNGNAIVPNTYVDLYLAANLDAEKLGQAVGIQNLEKKF 166

Query: 174 --------------IRVIAIDHNIDSDE------------------RVLVGSTATLELTP 201
                         +RVI++     +D                           T+ +  
Sbjct: 167 ISPTVKYFGLAAKKVRVISVKDGNTTDVFNALPNTENADGSKPSNIDRRQARLYTIAVNK 226

Query: 202 MQAKALVAAQSVAKL 216
              + L  A+ +  +
Sbjct: 227 ETLQTLNKAKLIGNV 241


>gi|190574778|ref|YP_001972623.1| putative transmembrane fimbriae assembly protein [Stenotrophomonas
           maltophilia K279a]
 gi|190012700|emb|CAQ46328.1| putative transmembrane fimbriae assembly protein [Stenotrophomonas
           maltophilia K279a]
          Length = 345

 Score = 84.8 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 81/271 (29%), Gaps = 52/271 (19%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           KLTR+  + + G+  L+A I  M         T   + ++ A+ I V+ +   L  G  +
Sbjct: 3   KLTRIAAVALIGLAVLLAVIALMIGRKQAAPATVAPVAQSEAQAITVVEAVARLPAGEPI 62

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           + N +                      ++  + G +    I +G  I    L      G 
Sbjct: 63  SANGVRLAQRTTPVA--------GAATSISAVVGKVPVQDIAEGTAISSGALAQ----GF 110

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL---------- 171
           S  L  G+RA  + +      G  I P D VDV +    ++   +               
Sbjct: 111 SLQLRPGERALAIPVDELVGAGNRILPGDFVDVFLNLRNAQPNASGPAEAAQTRLLLSRL 170

Query: 172 -------SNIRVIAIDHNIDSDERVL-----------------------VGSTATLELTP 201
                   +I  +  D    ++                              +A L +  
Sbjct: 171 RVLSYGQQDIAPVTGDAVAGNEGDTRNDPRAADITGNGSNHGSGNETTQPARSAVLAVPV 230

Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
             A  L+      KL L LR+ AD       
Sbjct: 231 ADANRLLLGAQQGKLFLALRNPADTGQPDLA 261


>gi|221070073|ref|ZP_03546178.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1]
 gi|220715096|gb|EED70464.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1]
          Length = 329

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 87/249 (34%), Gaps = 33/249 (13%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE------NPAKFINVLISKGDLA 56
           +  +  I V  + A+   +     +     Q  +   +       P   ++V+++   + 
Sbjct: 1   MVNVAKIAVGVLLAVALALGVYGWMLARAPQAPDPQAQASTSDSQPNASLSVVVAAQAVP 60

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G  +    L+ +  P +   DG   ++      Q   G +  V I KG P+   ++V  
Sbjct: 61  AGQALKAEDLQLMQLPAK--PDGAYGEI------QAAIGAVPAVDIPKGAPVFQGQMV-- 110

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSN 173
              GL+  L +G+RA  + +  S   G  I+P D VDV            +    ++LS 
Sbjct: 111 --TGLALKLSEGERAVAVKVDESIGAGNRIRPGDFVDVFFALRRDGNEIDQSQARLLLSR 168

Query: 174 IRVIAIDHNI------------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            RV+A                           TA L +   +   L+   S   L L LR
Sbjct: 169 KRVLAYGSASVDAVTTAEKTEGKQANGPDNARTAVLAVPVAEVNQLLLGGSSGSLLLALR 228

Query: 222 SIADLNPSS 230
           +  D+    
Sbjct: 229 NPTDMTEPD 237


>gi|291447356|ref|ZP_06586746.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291350303|gb|EFE77207.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 207

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 76/214 (35%), Gaps = 22/214 (10%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +     K ++A    +     E +  P+  + +  + D      ++E++  +
Sbjct: 5   VNSKVGPEVTAYQLKTNVAPYTALNSGQFEKIKMPKRWLSENAVTD------LREVESKI 58

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               + +G  ++ + +V +        L  G++   + I  S+ V G I P   V++   
Sbjct: 59  AVTELRQGSLLQSDMMVRKPE------LRAGEQEIAIMIDASTGVAGKITPGATVNIYAT 112

Query: 158 RSLSERK--PTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALV 208
            +  ++       V++SN +V+ +           D   R       T  L  +  + + 
Sbjct: 113 FAGEQQGDPAQSKVIVSNAKVLDVGELTALDPSADDRGTRATEAVPITFALNTLDTQRVA 172

Query: 209 AAQSVAK-LSLVLRSIADLNPSSSEDSDVWDVQE 241
            A+S A+ + L L +          D      ++
Sbjct: 173 YAESFAEHVRLALVAPGSDGIIRPGDRTYTLDKD 206


>gi|218708106|ref|YP_002415727.1| hypothetical protein VS_0018 [Vibrio splendidus LGP32]
 gi|218321125|emb|CAV17075.1| Conserved hypothetical protein; putative exported protein, CpaB
           [Vibrio splendidus LGP32]
          Length = 262

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 86/260 (33%), Gaps = 17/260 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++G+    +   + G++      P      +           V         G  
Sbjct: 1   MNSKIILGLAFLAISIGLYGVV----NVPMDTFPVQPEEPIIEVTFKVWKLTHPAVKGQQ 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +  +       PE       +  + Q   +   D       I   + + L  L   G+  
Sbjct: 57  LKRSDFVIEYLPEARA---ALLGIDQNIELDWNDPQFAVHDIAAYELVDLNMLTSPGDSQ 113

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV-----LSNI 174
            L +++  G     + +     +GG I   D VD+ ++ +  +   +   V     L+ +
Sbjct: 114 YLQAVIRPGFVPYNVTVPGRDVLGGTIAVGDLVDISVLSTPDQNLSSEDTVSDIQHLTMV 173

Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA--QSVAKLSLVLRSIADLNPSSSE 232
            ++A    +D        ST TLE    Q   ++    Q +A+L++  R IA++    S 
Sbjct: 174 PLLAQIPVLDMVTSEKAVSTLTLE-KETQVTLILQVTNQQLAQLTVAQR-IAEVAVHKSL 231

Query: 233 DSDVWDVQEEGKEIQIIKAG 252
             +  D  E      I  +G
Sbjct: 232 GKEFSDDLEADSSDIIPSSG 251


>gi|310830505|ref|YP_003965606.1| hypothetical protein PPSC2_p0144 [Paenibacillus polymyxa SC2]
 gi|309249972|gb|ADO59538.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 273

 Score = 84.4 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 88/270 (32%), Gaps = 51/270 (18%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  +++ + +  +  +   +  M   +               + + V +   DL V   
Sbjct: 1   MKKKKILILALQLLLLIGTAVGFMAYTNG------------ELQPVKVYVFNKDLNVNHQ 48

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           +T   ++ V+ P+  V   F  +       ++     V   +  G  I  +++ D+G   
Sbjct: 49  ITAADIKEVSVPQSGVTQDFALEP------KQFLNKYVGTEVYAGSFIYKKQIKDKGQLD 102

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---SLSERKP-----TVTVVL 171
              S+     R  ++ IS     GG +K  D VD+V         ++            L
Sbjct: 103 PFKSMDLTKYRKISIPISYVEGFGGNVKRGDAVDLVFTGVGKKKDDKGTEQSFQYSKAFL 162

Query: 172 SNIRVIAI-----------------------DHNIDSDERVLVGSTATLELTPMQAKALV 208
            N+ +  +                          ID+       +  TL +T  QA+ + 
Sbjct: 163 QNVLIYNVTTSDGFEFKDHSTTDLTKTSGQSGEKIDTSANSDELAVVTLAVTLDQAEEIT 222

Query: 209 AAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238
           A  +   + LV R  AD     +    + D
Sbjct: 223 ARMNAGNVRLVSR-FADNESYETLGFVLGD 251


>gi|221195348|ref|ZP_03568403.1| SAF domain protein [Atopobium rimae ATCC 49626]
 gi|221184535|gb|EEE16927.1| SAF domain protein [Atopobium rimae ATCC 49626]
          Length = 262

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 89/231 (38%), Gaps = 30/231 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN----PAKFINVLISKGDLAVG 58
           ++     V+SG  AL+A +  +   +    + E+   E       + +N++++   +  G
Sbjct: 1   MSHRFRFVLSGACALLAVLCCIVYGNQIKAEAEQSRAEVIERYGGEVVNLVVATKPIEAG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             ++ +  +  ++  +   +G   +        ++ G  V +PI  G P+     ++   
Sbjct: 61  DTISSSNTQVKSWVSDLAPEGSFTNAD------DIMGKQVTIPISAGTPLTK---LNFRT 111

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
              +  +PKG    ++     + + G +        +    +++           IR+++
Sbjct: 112 NETTVTVPKGLVGISISHGEKTGLVGKVAAGTT---LAAYEMTDHG---------IRLLS 159

Query: 179 IDHNIDSDERVLVG---STATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
               + SD    V    +  T+ + P    ++++A++   L LV+    D 
Sbjct: 160 TQITLLSDTGESVYISSTPLTVGVLPKDMTSILSAEAKGTLRLVV--PGDE 208


>gi|237733157|ref|ZP_04563638.1| predicted protein [Mollicutes bacterium D7]
 gi|229383701|gb|EEO33792.1| predicted protein [Coprobacillus sp. D7]
          Length = 229

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 29/218 (13%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R+  I++     +++G + M  V                    VL++  D+     + 
Sbjct: 5   SKRISLIIIIVAGLILSGSLFMIFVGN---------------TTEVLVATQDVKANTKIK 49

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            ++         ++ D ++      ++ +++ G    +   KG  I    +        S
Sbjct: 50  ESMFTTERVDTASLPDNYLS----ADSAKDVVGYYTYIGFTKGSVISKSNIATSAKK-AS 104

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
             + KGK   T+           I+  D V++++  +       V     NI V  I   
Sbjct: 105 GAIEKGKTLLTISAENLPTG---IQSGDKVNIIIGANTDSGNKVVLTY-QNIDVSNI--- 157

Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
              DE  + G   +  +TP Q++ +V A+   +LS+ L
Sbjct: 158 YVDDEGSITGLEVS--VTPEQSQKIVYAKLNGELSISL 193


>gi|258627505|ref|ZP_05722286.1| Flp pilus assembly protein CpaB [Vibrio mimicus VM603]
 gi|258580311|gb|EEW05279.1| Flp pilus assembly protein CpaB [Vibrio mimicus VM603]
          Length = 112

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQA 204
           + P + VDV+   S S+       VL +I+V+A+D    S E + ++    TLE+TP QA
Sbjct: 1   MLPGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAVTLEVTPEQA 60

Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           + L++AQS  ++ L LR+  +     +              + IIK 
Sbjct: 61  EKLLSAQSKGEIQLTLRNPHEPEEKVAVTRRYVA-----PSVTIIKG 102


>gi|258623895|ref|ZP_05718848.1| hypothetical protein VMB_01490 [Vibrio mimicus VM603]
 gi|258583689|gb|EEW08485.1| hypothetical protein VMB_01490 [Vibrio mimicus VM603]
          Length = 259

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    +  +V   +F+ +  +      S    Q  +++ E   K + +L+   D     +
Sbjct: 1   MNRNIIFLLVAVTIFSTLYYLQDQLFSSEPETQAPQIVEE---KKVQILVLSSDKQKSQL 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +     E V   E    +   +            G   R  +L G P++   + + G+  
Sbjct: 58  IDKKDFEVVEINESTFNESGDERREDIIIRP---GARYRENLLNGQPLKNSHISNVGDSD 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGM-IKPNDHV----------DVVMVRSLSERKPTVT 168
            L   + + +     ++  S  +  + ++P D V          +++          T  
Sbjct: 115 FLLLSIHQDEVPYYYEVKSSGILESVPLQPGDLVSFVSTTSSESNLLQTGYQDVGNLTSK 174

Query: 169 VVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           V++SN R+I +   D     +    +  +  + L       L  AQ +  +S++
Sbjct: 175 VIISNARIIQVIKGDLVEGKETNDDIKHSLVIALKVQDVLRLEMAQKIGDVSII 228


>gi|254393097|ref|ZP_05008257.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197706744|gb|EDY52556.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 205

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 22/216 (10%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                          D+A    + P   E VA P   +    + D      +  + G + 
Sbjct: 2   NSKVGPEATAYRLASDVAPYTALRPGQFEKVAVPRRWLPRTAVTD------LSTVRGKIA 55

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV- 157
              + KG  ++ + +V R        L  G++   + I  ++ V G I P D V++    
Sbjct: 56  VTELRKGSLLQDDMIVKRPE------LAPGEQEIAIMIDAATGVAGKITPGDLVNIFATF 109

Query: 158 -RSLSERKPTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALVA 209
                       ++++N +VI +           D   R+      T  L    A+ +  
Sbjct: 110 AGKAEGDPDQSRIIVTNAKVIDVGRLTPLDPRRDDRRSRMREAVPITFALGTKDAQRVAH 169

Query: 210 AQSVAK-LSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
           A+S A+ + L L +    +     DS     ++  +
Sbjct: 170 AESFAEHVRLALLAKGSPSTLRPGDSTYTLDEDRSR 205


>gi|262173895|ref|ZP_06041572.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451]
 gi|261891253|gb|EEY37240.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451]
          Length = 259

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    +  +V   +F+ +  +      S    Q  +++ E   K + +L+   D     +
Sbjct: 1   MNRNIIFLLVAVTIFSTLYYLQDQLFSSEPETQAPQIVEE---KKVQILVLSSDKQKSQL 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +     E V   E    +   +            G   R  +L G P++   + + G+  
Sbjct: 58  IDKKDFEVVEINESTFNESGDERREDIIIRP---GARYRENLLNGQPLKNSHISNVGDSD 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGM-IKPNDHV----------DVVMVRSLSERKPTVT 168
            L   + + +     ++  S  +  + ++P D V          +++          T  
Sbjct: 115 FLLLSIHQDEVPYYYEVKSSGILESVPLQPGDLVSFVSTTSSESNLLQTGYQDIGNLTSK 174

Query: 169 VVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           V++SN R+I +   D     +    +  +  + L       L  AQ +  +S++
Sbjct: 175 VIISNARIIQVIKGDLIEGKEANDDIKHSLVIALKVQDVLRLEMAQKIGDVSII 228


>gi|225389628|ref|ZP_03759352.1| hypothetical protein CLOSTASPAR_03376 [Clostridium asparagiforme
           DSM 15981]
 gi|225044308|gb|EEG54554.1| hypothetical protein CLOSTASPAR_03376 [Clostridium asparagiforme
           DSM 15981]
          Length = 281

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 104/274 (37%), Gaps = 41/274 (14%)

Query: 1   MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MKL  R +  ++S V A V   +A+             I         ++     +  G 
Sbjct: 3   MKLNNRFIFGILSLVLAAVIAFVAL-----------PTIARQTNGKAEIVRITQPVLKGE 51

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +T +  E V     N+            ++ +++G+ V   + +GD I   K+      
Sbjct: 52  KITSDNAEVVEVGGYNLPSNVAH------SLSDVEGLYVTADLAEGDYILTSKVSSVPVS 105

Query: 120 GLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
              +L  +P GK A +M + +++S +   ++PND + +      +E  P     L  ++V
Sbjct: 106 SDVALNDIPSGKVAISMTVKTLASGLSDKLQPNDIIRIYHFLETAEEVPE----LRFVKV 161

Query: 177 IAIDHN----------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           +++  +             DE     +T T+  TP QA+ +   ++     + L S  + 
Sbjct: 162 LSVTDSDGVNVDNTKEPTEDEERQQSATITVLATPEQARIITEMENDGVAHVALISRNND 221

Query: 227 NPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGE 260
             +         +  + K +Q I     + +DGE
Sbjct: 222 QLAE------ELLAAQDKTLQEIYFPETLTEDGE 249


>gi|258620804|ref|ZP_05715839.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258587002|gb|EEW11716.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 259

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    +  +V   +F+ +  +      S    Q  +++ E   K + +L+   D     +
Sbjct: 1   MNRNIIFLLVAVTIFSTLYYLQDQLFSSEPETQAPQIVEE---KKVQILVLSSDKQKSQL 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +     E V   E    +   +            G   R  +L G P++   + + G+  
Sbjct: 58  IDKKDFEVVEINESTFNESGDERREDIIIRP---GARYRENLLNGQPLKNSHISNVGDSD 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGM-IKPNDHV----------DVVMVRSLSERKPTVT 168
            L   + + +     ++  S  +  + ++P D V          +++          T  
Sbjct: 115 FLLLSIHQDEVPYYYEVKSSGILESVPLQPGDLVSFVSTTSSESNLLQTGYQDVGNLTSK 174

Query: 169 VVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           V++SN R+I +   D     +    +  +  + L       L  AQ +  +S++
Sbjct: 175 VIISNARIIQVIKGDLIEGKEANDDIKHSLVIALKVQDVLRLEMAQKIGDVSII 228


>gi|256827719|ref|YP_003151678.1| SAF domain-containing protein [Cryptobacterium curtum DSM 15641]
 gi|256583862|gb|ACU94996.1| SAF domain-containing protein [Cryptobacterium curtum DSM 15641]
          Length = 210

 Score = 82.9 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 82/228 (35%), Gaps = 23/228 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPH--HVQTEEVITENPAKFINVLISKGDLAVG 58
           M+   ++ I +         + A           Q +E ++      + V ++  D+A G
Sbjct: 1   MRRKGMLAISLLCGLICALCVSAYLQAEQARFQAQRDEALSRYGGDQVQVCVATRDIAPG 60

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
              +   +E  ++  E      +  V       +++G     P+  G+ I   +     +
Sbjct: 61  ETYSSANVELRSWIAELSPRQAVGTVA------DIEGKQAAGPVSSGEVITTVRCA---D 111

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
              +  +P GK+A ++ +  S AVGG ++       V V   S         L + +V+A
Sbjct: 112 NTAAIQVPAGKQAVSIAVESSQAVGGSLEAG-----VQVSVYSASSSGSVAYLCDAQVLA 166

Query: 179 IDHNIDSDERVLVGSTATLELTPMQA-KALVAAQSVAKLSLVLRSIAD 225
                            TL + P Q  + + AA+  + + L L +  +
Sbjct: 167 AGT------YSAGRMWVTLAVDPAQVQEVIAAARDSSSVYLTLPAEGE 208


>gi|167771223|ref|ZP_02443276.1| hypothetical protein ANACOL_02581 [Anaerotruncus colihominis DSM
           17241]
 gi|167666642|gb|EDS10772.1| hypothetical protein ANACOL_02581 [Anaerotruncus colihominis DSM
           17241]
          Length = 279

 Score = 82.9 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 91/257 (35%), Gaps = 35/257 (13%)

Query: 1   MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MKL  R +  ++S + A V   +A+             I         ++     +  G 
Sbjct: 1   MKLNNRFIFGILSLLLAAVIAFVAL-----------PTIARQTNGKEEIVRITQPVLKGE 49

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            ++    E V     N+             + +++G+     +  GD I   K+      
Sbjct: 50  QISSENAEVVEVGGYNLPSNIAHQ------LSDVNGLYATADLAVGDYILTSKISSVPVS 103

Query: 120 GLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
              +L  +P GK A ++ + +++S +   ++P D + +      +   P     L  ++V
Sbjct: 104 SDVALNSIPSGKVAISLTVKTLASGLSDKLQPGDIIRIYHFLDTAAEVPE----LRFVKV 159

Query: 177 IAIDHN----------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           +++  +             DE     +T T+  +P QAK +   ++     + L S  + 
Sbjct: 160 LSVTDSDGINVDNAKEPTEDEEKQQSATITVLASPEQAKIITGLENDGVAHVALISRNND 219

Query: 227 NPSSSEDSDVWDVQEEG 243
             +    ++     +E 
Sbjct: 220 KLADELLAEQDKTLQEI 236


>gi|262164948|ref|ZP_06032686.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223]
 gi|262027328|gb|EEY45995.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223]
          Length = 259

 Score = 82.9 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 81/234 (34%), Gaps = 21/234 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    +  +V   +F+ +  +      S    Q  +++ E   K + +L+   D     +
Sbjct: 1   MNRNIIFLLVAVTIFSTLYYLQDQLFSSEPETQAPQIVEE---KKVQILVLSSDKQKSQL 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +     E V   E    +   +            G   R  +L G P++   + + G+  
Sbjct: 58  IDKKDFEVVEINESTFNESGDERREDIIIRP---GARYRENLLNGQPLKNSHISNVGDSD 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGM-IKPNDHV----------DVVMVRSLSERKPTVT 168
            L   + + +     ++  S  +  + ++P D V          +++          T  
Sbjct: 115 FLLLSIHQDEVPYYYEVKSSGILESVPLQPGDLVSFVSTTSSESNLLQTGYQDVGNLTSK 174

Query: 169 VVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           V++SN R+I +   D     +    +  +  + L       L  AQ +  +S++
Sbjct: 175 VIISNARIIQVIKGDLIERKEANDDIKHSLVIALKVQDVLRLEMAQKIGDVSII 228


>gi|283795336|ref|ZP_06344489.1| putative Flp pilus assembly protein CpaB [Clostridium sp. M62/1]
 gi|323484181|ref|ZP_08089551.1| hypothetical protein HMPREF9474_01302 [Clostridium symbiosum
           WAL-14163]
 gi|291076992|gb|EFE14356.1| putative Flp pilus assembly protein CpaB [Clostridium sp. M62/1]
 gi|323402623|gb|EGA94951.1| hypothetical protein HMPREF9474_01302 [Clostridium symbiosum
           WAL-14163]
          Length = 279

 Score = 82.9 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 91/257 (35%), Gaps = 35/257 (13%)

Query: 1   MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MKL  R +  ++S + A V   +A+             I         ++     +  G 
Sbjct: 1   MKLNNRFIFGILSLLLAAVIAFVAL-----------PTIARQTNGKEEIVRITQPVLKGE 49

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            ++    E V     N+             + +++G+     +  GD I   K+      
Sbjct: 50  QISSENAEVVEVGGYNLPSNIAHQ------LSDVNGLYATADLAVGDYILTSKISSVPVS 103

Query: 120 GLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
              +L  +P GK A ++ + +++S +   ++P D + +      +   P     L  ++V
Sbjct: 104 SDVALNSIPSGKVAISLTVKTLASGLSDKLQPGDIIRIYHFLDTAAEVPE----LRFVKV 159

Query: 177 IAIDHN----------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
           +++  +             DE     +T T+  +P QAK +   ++     + L S  + 
Sbjct: 160 LSVTDSDGINVDNAKEPTEDEEKQQSATITVLASPEQAKIITGLENDGVAHVALISRNND 219

Query: 227 NPSSSEDSDVWDVQEEG 243
             +    ++     +E 
Sbjct: 220 KLADELLAEQDKTLQEI 236


>gi|83589202|ref|YP_429211.1| Flp pilus assembly CpaB [Moorella thermoacetica ATCC 39073]
 gi|83572116|gb|ABC18668.1| Flp pilus assembly CpaB [Moorella thermoacetica ATCC 39073]
          Length = 229

 Score = 82.9 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 46/233 (19%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           ++ I+     A+ +GI   R +S H                 V++   ++     + P  
Sbjct: 21  ILAIIFGLAVAVASGIYYQRYISTHQA------------MTQVIVPAHNINAYTQIKPGD 68

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
           L W   P   V  G            +L G +    + +G+ +RLE++ +          
Sbjct: 69  LTWRQVPVGAVEPGTARKPD------DLVGKVALAELYQGEQVRLERVGEVS-------- 114

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA------- 178
              K+   ++I ++ + GG   P D VDV              ++ SN R++        
Sbjct: 115 TDDKQVVAVNIDLARSGGGYFSPGDLVDVYFA---ETENVPGAILASNARLLQLVDAQGN 171

Query: 179 ----------IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
                     +     S +     + A L ++P     +    +     +VL 
Sbjct: 172 PITLNQQGGLLQQASQSAQAPRTPAVAVLAVSPADIPQVTRGAANGSRGIVLV 224


>gi|228969168|ref|ZP_04130064.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790514|gb|EEM38219.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|326943829|gb|AEA19719.1| hypothetical protein CT43_P72025 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 269

 Score = 82.5 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 81/250 (32%), Gaps = 48/250 (19%)

Query: 1   MKLT---RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MK     + + I ++    LV  I+            E     +      V  +K D+  
Sbjct: 1   MKKKSTPKKLAITLAASIGLVVAIVGY----------ENYAVSSKVNLQKVYFTKVDIPP 50

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
              +T ++L+       ++    I + +       ++G      +++   +   K+V + 
Sbjct: 51  RTKITKDMLQVREVSNSSIPPNAIKNPNDIVGKYTVNG----FGLVENSYVFKNKVVSKD 106

Query: 118 NGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV------ 169
               +++  L   + A  + + I ++ G  I P  HVD+    ++ ++     V      
Sbjct: 107 ELPDAAILNLKPSEVAFPLLVDIETSSGNSIIPESHVDLYFKGTVKDKDEKGEVVEKPIF 166

Query: 170 --VLSNIRVIAI---------------------DHNIDSDERVLVGSTATLELTPMQAKA 206
             +  ++RV A+                     D   +  +   +    T  +   +   
Sbjct: 167 GRIAKHVRVTAVKDSNAANVFDPATINVEGSYQDSLKEEAKNRPMAKIYTFAVNEEENTL 226

Query: 207 LVAAQSVAKL 216
           L     + K+
Sbjct: 227 LNQGTLIGKI 236


>gi|167836795|ref|ZP_02463678.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis
           MSMB43]
          Length = 174

 Score = 82.5 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 21/179 (11%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           +  V+    A++ G+ A  L                   + V+++   L  G  +  + L
Sbjct: 8   IIAVLLIGIAILLGLYAWVLGRKPAPVAPAAAPAAATAMVPVVVAARALPAGQPIPADAL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           +    P                    + G +    I+   P+   +L+     GL+  + 
Sbjct: 68  KVQQTPTPIA--------GAFPNPTLVTGRIPASDIVAQAPVLESELM----SGLADQIA 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRV 176
            G+RA  + +  ++AVG  ++P + VDV +                +    ++LS +RV
Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGAEIAQTQARLLLSRVRV 174


>gi|326204373|ref|ZP_08194231.1| SAF domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325985405|gb|EGD46243.1| SAF domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 241

 Score = 82.5 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 88/254 (34%), Gaps = 24/254 (9%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            RL+   V     +   + A       +    +       K + VL +   +    ++  
Sbjct: 3   KRLVIKTVLICIGIFIILSATAWYFIFNTYKLDTE-----KNVTVLAASTKIDENTIINE 57

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           +++           +  + D+       E  G      I +GD I    L+ +     S 
Sbjct: 58  SMIRKKTVKASAATENMVKDIS------ECTGSKSTGLIKEGDYIYRYNLISK-----SK 106

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV-IAIDHN 182
           L     RA  +  +I      ++K    VD+++    +  +P   +VLS +RV +  D +
Sbjct: 107 LYADDIRAIVLPATIEDRAANLVKKGSLVDIIVQPKEASGRP--QIVLSKVRVDMVFDDS 164

Query: 183 IDSDERVLVGST---ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
             + E   VGS      L L   Q   + +A+    LS  L    D     S+++ V   
Sbjct: 165 GINTEGSEVGSKKGFIKLLLNSNQRAKIYSARLAGTLSYEL--YCDETQLPSKENYVIPT 222

Query: 240 QEEGKEIQIIKAGV 253
           +        IK G+
Sbjct: 223 KTNNNISDEIKNGI 236


>gi|317133732|ref|YP_004089643.1| hypothetical protein Rumal_3294 [Ruminococcus albus 7]
 gi|315450194|gb|ADU23757.1| hypothetical protein Rumal_3294 [Ruminococcus albus 7]
          Length = 253

 Score = 82.1 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 74/226 (32%), Gaps = 32/226 (14%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
              + ++++ + A+V G +  +  +                   + +   D   G  +  
Sbjct: 6   KITILLILAVISAIVTGTLIYKYCNSTKGF--------------IYVFNDDYKAGAKIEK 51

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV------PILKGDPIRLEKLVDRG 117
           ++L  +   ++ +  G    +       E    +V         ++K  P+ L  L    
Sbjct: 52  SMLSPMKVDDQIIKTGQKGGLESYYITGENYSKVVERNEYLLNDVVKNQPLTLVDLAMTS 111

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
              +   L     A T+ IS ++AV   ++    V++              ++  N+R+I
Sbjct: 112 GSSIERSLSGNGMAVTIPISGTAAVTDELRVGSVVNIYSS-----DASGTKLLFENMRII 166

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
           A              S  T E +P     L+ A +  KL   L S 
Sbjct: 167 A-------RNNENSVSKVTFETSPDDTLDLINAANNKKLYFSLVSP 205


>gi|288870575|ref|ZP_06114611.2| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479]
 gi|288866630|gb|EFC98928.1| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479]
          Length = 275

 Score = 82.1 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 78/228 (34%), Gaps = 25/228 (10%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
               I         ++     +  G ++T   +E       N+            + +++
Sbjct: 26  ALPTIARQTNGKTEIVRVSKPVLKGAIITDKNVELAEVGSYNLPANIAR------STEDV 79

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDI-SISSAVGGMIKPND 150
            G      +++GD I   K+         +L  +P G+ A ++ + +++S +   ++  D
Sbjct: 80  VGKYAVSDLMEGDYILSSKISALPLTSDIALNDIPSGRVAISLSVKTLASGLSDKLQAGD 139

Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAID----------HNIDSDERVLVGSTATLELT 200
            V +      +   P     L  +RV+++                DE     +T T+  T
Sbjct: 140 IVRIYHFLETAREIPE----LRFVRVLSVTGADGTNIDNTAEPAEDEEKQQSATVTVMAT 195

Query: 201 PMQAKALVAAQSVAKLSLVL--RSIADLNPSSSEDSDVWDVQEEGKEI 246
           P QA+ +   ++     + L  R+  +L      + D      E   +
Sbjct: 196 PEQARIITELENDGVAHVALISRNNEELAAELLAEQDQMLSDLESPAL 243


>gi|261251282|ref|ZP_05943856.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
 gi|260938155|gb|EEX94143.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891]
          Length = 258

 Score = 81.7 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 93/266 (34%), Gaps = 25/266 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M  T ++ +V   +F++   I    L S    Q + + +E     + VL+  G+   G +
Sbjct: 1   MNRTIILVLVTLVIFSIFIFINNTYLSSTGEEQEKVIKSE---PKVAVLVVSGEAKKGQI 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +  +I +        V         + +      G L +  +  G+ I  E + + G+  
Sbjct: 58  IKSSIHKSELVNLSQVESVDYTPKDEIHIEP---GALFKRDLNPGELISQEDISNPGDRD 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGM-IKPNDHVDVVMV----------RSLSERKPTVT 168
            +   + KG+      ++    V  + + P D V  V                       
Sbjct: 115 YMFLSVNKGELPYFYHVTGLGIVQTLSLYPGDKVSFVSTTSSETNLLEDGYGDVGGLVSR 174

Query: 169 VVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           V++S  RV+ +   + + D+ +      +  + L       L  AQ V  +++V    A+
Sbjct: 175 VIISGARVLQVIKGEEDEDAQDAEDKQYSIVVALRMRDVLKLEMAQKVGDVNIV---PAE 231

Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKA 251
           +           D+ E    ++ ++ 
Sbjct: 232 IENRYLSIRS-SDLLETQFGVRELRG 256


>gi|89100212|ref|ZP_01173079.1| hypothetical protein B14911_20170 [Bacillus sp. NRRL B-14911]
 gi|89085062|gb|EAR64196.1| hypothetical protein B14911_20170 [Bacillus sp. NRRL B-14911]
          Length = 274

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 79/211 (37%), Gaps = 26/211 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   ++ I+VS + A  AG   ++ VS  + +              V ++  D+    ++
Sbjct: 5   KRRAIIFILVSVLLAAAAGFFVLQKVSALNSEL--------GGMTEVYVAASDIPSRTLI 56

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               ++ V  P   V +  + +V      ++L   ++ VP+   D I    +       +
Sbjct: 57  EREQVKTVEIPNRYVNNSHVTNV------EDLINKVLVVPVAAEDVITKTMI-----KPV 105

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           S++  +  R   +  S        ++  D VD+++    ++ KP     + ++ V A+  
Sbjct: 106 SNVRDENNRLVMIPQSDKVNFDQQLEALDRVDIIVSHKFND-KPVTETFMKDVPVAAV-- 162

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQS 212
                +         +E+    A  ++  Q+
Sbjct: 163 ----LKSNKKFKGIVVEIADKDAPQVIHMQN 189


>gi|238793621|ref|ZP_04637244.1| tight adherance operon protein [Yersinia intermedia ATCC 29909]
 gi|238727036|gb|EEQ18567.1| tight adherance operon protein [Yersinia intermedia ATCC 29909]
          Length = 277

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 94/282 (33%), Gaps = 41/282 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS--KGDLAVG 58
           M    L+   +  V    AGI+               +     K + ++++    DL+ G
Sbjct: 1   MNRKFLLLFSILIVAIGAAGIMIN--TKHDEHTPYNFVDSKKEKEVEIVLAQSTHDLSSG 58

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
            ++T N           V +         +   +++  L++  +L G  I    L    +
Sbjct: 59  TLLTQNDYALKVI---MVPESSELIKSNISGKTDINSHLLKTNLLSGSYITPAVLASPDS 115

Query: 119 GGLSSL-LPKGKRAATMDISISSA-VGGMIKPND------HV------------DVVMVR 158
              S L L KG+     +I+  +  +   ++  D       V             V+  +
Sbjct: 116 NEFSYLNLKKGEVIYKFNINNKNGYLLDTLQVGDSLSFQLRVLETDKNKGMSSGTVINTK 175

Query: 159 SLSERKPTV---TVVLSNIRVIAI----------DHNIDSDERVLVGSTATLELTPMQAK 205
            LS++K        ++  +R+I +           +N +     +V    ++ +   +  
Sbjct: 176 ELSDKKSQTFSLNEIIPAMRIIRVKKYSADELSEKNNKNQKTEEVVTGYISVMIKREELD 235

Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
            +  A+    + L   SI   N  S+   D+       +E++
Sbjct: 236 IIHIAEKSGDIILA-PSIVSDNNQSTNIYDIIPKLRITRELR 276


>gi|332970970|gb|EGK09944.1| hypothetical protein HMPREF9374_2747 [Desmospora sp. 8437]
          Length = 245

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 34/243 (13%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   ++  V+S + A VAG + +        +    +         V ++K ++A   ++
Sbjct: 5   KRRAIIFAVLSVLLATVAGFLFL--------EETAALQAGLGAPTTVYVAKQEIASREIL 56

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
            P   E    P + V    + D        E+DG +  VP+ KGD +    L        
Sbjct: 57  RPEFFEAKEIPSKYVTSSMVTDPA------EIDGQVSVVPLGKGDQLTKSMLKP------ 104

Query: 122 SSLLPKGK-RAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNIRV 176
           +  L  G+ R   +  S            D VD+++           KP  TV + +  +
Sbjct: 105 ARQLNDGESRMVLLRTSDKVLFDDSFTAQDRVDIIVSYEKDPKTGAEKPKTTVFMKDKLI 164

Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236
           + +              +  +ELT  +A+ LV A++ A    VL++  + +     + D 
Sbjct: 165 VGV---------SKNQKSIGIELTLKEAEKLVYAENFAHSIRVLKAPQEQDMKKDNEKDA 215

Query: 237 WDV 239
            D 
Sbjct: 216 QDD 218


>gi|330895617|gb|EGH27924.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 215

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 22/170 (12%)

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           G      +  G  +          G L+ ++   +RA  + +   +   G + P D+VDV
Sbjct: 1   GRSSGRTLTAGSWLTESNF--EAGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDV 58

Query: 155 VMVRSLSERKP--TVTVVLSNIRVIAI------------------DHNIDSDERVLVGST 194
           ++        P  +  VV+  +R++ +                  D  +  +++ +   T
Sbjct: 59  LLYLPEDMSNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINART 118

Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
            T+ +       L+ A     L L +RS  + N      ++V       +
Sbjct: 119 VTVAVPQALVARLMLASQTGVLRLAVRSADEGNLQGYWANEVSGPDAAER 168


>gi|328952515|ref|YP_004369849.1| hypothetical protein Desac_0789 [Desulfobacca acetoxidans DSM
           11109]
 gi|328452839|gb|AEB08668.1| hypothetical protein Desac_0789 [Desulfobacca acetoxidans DSM
           11109]
          Length = 357

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLS 172
                 L+  +P G RA ++ +   + V   +   D VDV+    L          +VL 
Sbjct: 47  PPKAVNLTENIPVGMRAVSIKVDEVTGVSRKVIKGDWVDVLATTPLPGSPHTSVARLVLD 106

Query: 173 NIRVIAI----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
            ++V  +    D    S ++     T TL +TP Q   L+AA S AK+SL+ R   D  P
Sbjct: 107 RVQVFDVTLEADTKGQSKQKGEKDWTVTLLVTPDQGATLLAAASQAKISLLARQANDARP 166

Query: 229 SSSEDSDVW 237
            +  D    
Sbjct: 167 HNFRDIAFA 175



 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 63/163 (38%), Gaps = 24/163 (14%)

Query: 113 LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--------------- 157
            + + +G  +  +  G RA T+ +  +  +   ++  D VDV++                
Sbjct: 182 FLLKPDGDATDWIHPGMRAVTLKVRDTDGICANLRRGDRVDVLLTCPFSRFASGGNVAAG 241

Query: 158 --RSLSERKPTVTVVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVA---AQ 211
              ++++ +     +L ++ V+  +  ++   E        TL++TP  A+ +     A 
Sbjct: 242 AQGTVTDYEMVTRTLLQDVEVLVSEKGLEPNTEDNEPVRLVTLQMTPHDAEKVTCALDAT 301

Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE---IQIIKA 251
           S   + LV R+  D     S   ++  +    KE   I + K 
Sbjct: 302 SKDIIRLVSRNKRDRRLVCSPGQELSSLLMRKKEYNRIDVYKG 344


>gi|254381960|ref|ZP_04997323.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194340868|gb|EDX21834.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 205

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 72/212 (33%), Gaps = 20/212 (9%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +     KGD+A    ++    E +  P+  + D  + D      +  L   +
Sbjct: 5   VNSKVGSEVVAYRVKGDIAPYSPLSAGQFEQITVPKRWLSDTAVSD------LGALKDKI 58

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               + KG  ++ +  V R        L  G++   + I  ++ V G I P   V+++  
Sbjct: 59  ALTTLKKGSLLQTDMFVARP------QLQAGEQEIAIMIDAATGVAGKITPGARVNILGT 112

Query: 158 RSL--SERKPTVTVVLSNIRVIAID-----HNIDSDERVLVGSTATLELTPMQAKALVAA 210
                        V+++  RVI +            +        T  L+    + +  A
Sbjct: 113 FKGKKPTDPDQSLVMVAGARVINVGKLTPLDKTSDKKGPSEAVPITFALSTKDTQRVAYA 172

Query: 211 QSVAK-LSLVLRSIADLNPSSSEDSDVWDVQE 241
           +S A+ + L L +    +P S  D       +
Sbjct: 173 ESFAEHVRLALVAAGPESPVSPGDRSYTLEGD 204


>gi|229827062|ref|ZP_04453131.1| hypothetical protein GCWU000182_02446 [Abiotrophia defectiva ATCC
           49176]
 gi|229788680|gb|EEP24794.1| hypothetical protein GCWU000182_02446 [Abiotrophia defectiva ATCC
           49176]
          Length = 278

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 71/197 (36%), Gaps = 26/197 (13%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
            K   V+  K  +  G ++T + LE V      +    +  +        + G   +   
Sbjct: 34  EKQEEVVRVKEKITEGELITADKLETVNVGAYGLSPDVVKSIDG------ITGKYAKTDF 87

Query: 103 LKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRS 159
            KG  I  E L D      + L  +P+ K A ++ I S ++ +   +   D V ++  + 
Sbjct: 88  YKGSYITGEGLSDVALEEDTYLNDIPEDKYAISITIQSFAAGLSSKLLKGDIVTII-TKK 146

Query: 160 LSERKPTVTV--VLSNIRVIAIDHNIDSDERVLVG--------------STATLELTPMQ 203
               +    +   L+ + V++       D+                   +T TL +  +Q
Sbjct: 147 GEGDEAVTEIPRELTYVEVLSTTEEDGEDKENNGKEVKKEDDTKAKKKLATITLLVNSLQ 206

Query: 204 AKALVAAQSVAKLSLVL 220
           A+ L + ++   + + L
Sbjct: 207 AEELASFENQRGIHVAL 223


>gi|222834615|gb|EEE73078.1| predicted protein [Populus trichocarpa]
          Length = 388

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 65/205 (31%), Gaps = 49/205 (23%)

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            +  G P+  ++L+     GL+  L  G+RA  + I    A G  ++P D VDV      
Sbjct: 2   ALTPGTPLFEQQLL----SGLALQLEPGQRALAIAIREQMAAGHHVRPGDFVDVYFTLDG 57

Query: 161 SERKP----TVTVVLSNIRVIAIDHNI-------------------------------DS 185
              +        ++L+  RV+A                                     +
Sbjct: 58  KSDQAPVDAQTRLLLARSRVLAYGSGSVERPPMPAVQRQAQQDKESAGSSLRRASAADQT 117

Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD--------LNPSSSEDSDVW 237
            +R     +A L +     + L  A+   +L+L LR+  D                +   
Sbjct: 118 GQRPENVQSAVLAVPLDDVERLTLAEKFGQLTLALRNPDDLLAGHRLTHLAGDPAGAAFL 177

Query: 238 DVQEEGKEI--QIIKAGVIVNKDGE 260
            +      +  +  +AG +    G+
Sbjct: 178 GLAGRQAAVRHRCARAGQVTACAGQ 202


>gi|17549310|ref|NP_522650.1| signal peptide protein [Ralstonia solanacearum GMI1000]
 gi|17431562|emb|CAD18240.1| probable flp pilus assembly cpab; signal peptide protein [Ralstonia
           solanacearum GMI1000]
          Length = 208

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 15/158 (9%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
            +      V       EN      V+++   L  G  +T + +   + P          +
Sbjct: 25  WKNAHRQPVPAAAQQNENGKTLYPVVVTVKPLEAGKPITADQVGVESLPIN--PADAFSE 82

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143
           V++      + G    VPI  G P+   +L    + GL+  +  G+RA  + +     VG
Sbjct: 83  VNK------VVGREPIVPIGIGVPLIGSQL----SSGLALQVALGQRAVAITVDEVVGVG 132

Query: 144 GMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIA 178
             + P D+VDV +V     ++       ++L ++RV+A
Sbjct: 133 NRVMPGDYVDVFLVLRKDGQEIDDSKAHLLLPHLRVLA 170


>gi|228943039|ref|ZP_04105540.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228955921|ref|ZP_04117858.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228976628|ref|ZP_04137071.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783097|gb|EEM31233.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228803748|gb|EEM50430.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228816624|gb|EEM62748.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 263

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 42/244 (17%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK      + V     LVA I             E     +      V  SK D+     
Sbjct: 1   MKKLPKKTVSVLIAVGLVATIAGY----------ENYKINSAINPTKVYYSKVDIPPRTK 50

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T ++L+    P + +    I +V        ++G      + K   +  +K+V +    
Sbjct: 51  ITKDMLQERVIPGDAIAPNAITNVKDLEGKYTVNG----FGVSKNSLLYKDKVVPKDELP 106

Query: 121 LSSLL--PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-----VVLSN 173
            +++L   K + A  + + I ++ G  I P+ +VD+     +              V  +
Sbjct: 107 DAAILNLKKSEVAFPLLVDIETSSGNSIIPDSYVDLYFKGKVKNESDHTEKPIFGRVAKH 166

Query: 174 IRVIAI---------------------DHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212
           +RV ++                     D+  +  +   +    T  ++  + + L     
Sbjct: 167 VRVTSVKDSNATNVFDPKSVEVDGSYKDNLNNEAKNRPLAKIYTFAVSDEENQLLNKGAL 226

Query: 213 VAKL 216
           + ++
Sbjct: 227 IGEI 230


>gi|296118260|ref|ZP_06836841.1| putative secreted protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295968818|gb|EFG82062.1| putative secreted protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 223

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 32/218 (14%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           V+  +    A ++A+  +  +                 +L+   D+  G  +T      V
Sbjct: 16  VIGVILVFAAVVVALSGLRENP---------------EILVFARDVDAGQELTAADTHLV 60

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
             P + +      D    +   E+ G ++  P + G+ +   +L+      L+S L  G 
Sbjct: 61  RVPHDVIP-----DEGALHDPDEVVGRIITAPAVAGEFVTELRLL---GDELTSQLVPGG 112

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLS--ERKPTVTVVLSNIRVIAI------DH 181
               + ++    +  ++   D V+VV  +         +   +    RVIA         
Sbjct: 113 HMVPLKLAEPDLIS-LLHHGDTVNVVSSQEDELSPGLFSPLTIAEGARVIATSADISAGA 171

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           +  S+  V   +T  L L   QA+ + +A     L++V
Sbjct: 172 HASSNASVGSPATILLALPADQAQLVASASLSQPLTVV 209


>gi|320161550|ref|YP_004174774.1| hypothetical protein ANT_21480 [Anaerolinea thermophila UNI-1]
 gi|320161814|ref|YP_004175039.1| hypothetical protein ANT_24130 [Anaerolinea thermophila UNI-1]
 gi|319995403|dbj|BAJ64174.1| hypothetical protein ANT_21480 [Anaerolinea thermophila UNI-1]
 gi|319995668|dbj|BAJ64439.1| hypothetical protein ANT_24130 [Anaerolinea thermophila UNI-1]
          Length = 290

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 29/192 (15%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + + + +V++ V   VA  +                   P   ++V+++ GDL  G V+T
Sbjct: 1   MKKFIPLVLAIVVFAVALAL-----------------NQPEPQVSVVVAAGDLPEGRVLT 43

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L     P+    +G + D       Q L G  +RV    GDP+    L     GG +
Sbjct: 44  EGDLTAKELPKSLAPEGAVSDP------QSLVGQRLRVARSAGDPVLPVHL-----GGET 92

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
             L   +RA  + ++ +  + G++KP D V V ++ + S ++     +   +RV+ ID  
Sbjct: 93  LELRPNERAVALSVTAAQGLAGLLKPGDRVGVTVIVNAS-QQTFAKYIAGGLRVLWIDPA 151

Query: 183 IDSDERVLVGST 194
              +E      T
Sbjct: 152 FRREEAPAPQGT 163


>gi|157502150|ref|YP_001485249.1| hypothetical protein pBMB67_063 [Bacillus thuringiensis]
 gi|228942717|ref|ZP_04105245.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975828|ref|ZP_04136358.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982331|ref|ZP_04142607.1| Hypothetical secreted protein [Bacillus thuringiensis Bt407]
 gi|87133455|gb|ABD24365.1| hypothetical secreted protein [Bacillus thuringiensis]
 gi|228777436|gb|EEM25727.1| Hypothetical secreted protein [Bacillus thuringiensis Bt407]
 gi|228783854|gb|EEM31903.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228816928|gb|EEM63025.1| Hypothetical secreted protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 272

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 79/246 (32%), Gaps = 43/246 (17%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K +    + ++   ++   +  +          E     +      V  +K D+     +
Sbjct: 6   KKSTPKKLAITLAASIGLVVAIVGY--------ENYAVSSKVNLQKVYFTKVDIPPRTKI 57

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T ++L+       ++    I + +       ++G      +++   +   K+V +     
Sbjct: 58  TKDMLQVREVSNSSIPPNAIKNPNDIVGKYTVNG----FGLVENSYVFKNKVVSKDELPD 113

Query: 122 SSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV--------VL 171
           +++  L   + A  + + I ++ G  I P  HVD+    ++ ++     V        + 
Sbjct: 114 AAILNLKPSEVAFPLLVDIETSSGNSIIPESHVDLYFKGTVKDKDEKGEVVEKPIFGRIA 173

Query: 172 SNIRVIAI---------------------DHNIDSDERVLVGSTATLELTPMQAKALVAA 210
            ++RV A+                     D   +  +   +    T  +   +   L   
Sbjct: 174 KHVRVTAVKDSNAANVFDPATINVEGSYQDSLKEEAKNRPMAKIYTFAVNEEENTLLNQG 233

Query: 211 QSVAKL 216
             + K+
Sbjct: 234 TLIGKI 239


>gi|323493935|ref|ZP_08099052.1| pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
 gi|323311876|gb|EGA65023.1| pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546]
          Length = 258

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 92/266 (34%), Gaps = 25/266 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M  T ++ +V   +F+     I    +S    Q E+VI       + VL+  G    G +
Sbjct: 1   MNRTIILVLVTLVIFSTF-VFINNTYLSSSGEQQEQVI--KSEPKVAVLVVSGAAKKGQI 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +  +I +        V         + +      G L +  +  G+ I  E + + G+  
Sbjct: 58  IKSSIHKTELVNLSQVEGVDYTPKDEIHIEP---GALFKRDLNPGELISQEDISNPGDRD 114

Query: 120 GLSSLLPKGKRAATMDISISSAVGGM-IKPNDHVDVVMVRSLSE----------RKPTVT 168
            +   + KG+      ++    V  + + P D V  V   S                   
Sbjct: 115 YMFLSVNKGELPYFYHVTGLGIVQTLSLYPGDKVSFVSTTSSDTNLLEDGYGDVGGLVSR 174

Query: 169 VVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           V++S  RV+ +   + + D+ +      +  + L       L  AQ V  +++V    A+
Sbjct: 175 VIISGARVLQVIKGEEDEDAQDAEDKQYSIVVALRMRDVLKLEMAQKVGDVNIV---PAE 231

Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKA 251
           +           D+ E    ++ ++ 
Sbjct: 232 IENRYLSIRS-SDLLETQFGVRELRG 256


>gi|320526981|ref|ZP_08028170.1| putative Flp pilus assembly protein CpaB [Solobacterium moorei
           F0204]
 gi|320132566|gb|EFW25107.1| putative Flp pilus assembly protein CpaB [Solobacterium moorei
           F0204]
          Length = 237

 Score = 80.2 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 78/228 (34%), Gaps = 30/228 (13%)

Query: 1   MKL--TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58
           MK      +  ++  ++A+   +     +                      I+K D+   
Sbjct: 1   MKKVKRTGIYALILCLWAVGNILAFRYYL------------AKTINLKTTYIAKHDIPPR 48

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP--ILKGDPIRLEKLVDR 116
             +    L  +  PE+          +  N   ++ G    V   I KG     + L + 
Sbjct: 49  TQIQTEDLTTIQVPEK------YMQAYTWNEKSDIVGKYTTVQGMIPKGSMFYKDMLYNE 102

Query: 117 GNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174
                 ++  L +G    T++ ++  +  G I+   +VD+ +  S  +  P   +++ + 
Sbjct: 103 KEVRDLAITKLQEGMTIFTLETNV--SALGSIEEGMYVDIYVSISQKKDVPITGILIRHA 160

Query: 175 RVIAI----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
            VI+I      ++  ++   V     L +       L  A S+ ++ L
Sbjct: 161 EVISIKDHKGLSLKDEQSSKVPYFIELGINQSDIDYLSLASSLGEVRL 208


>gi|86144319|ref|ZP_01062651.1| hypothetical protein MED222_07918 [Vibrio sp. MED222]
 gi|85837218|gb|EAQ55330.1| hypothetical protein MED222_07918 [Vibrio sp. MED222]
          Length = 258

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 87/266 (32%), Gaps = 25/266 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ + V+         I +  +S      E  + E     +++L+++ ++     
Sbjct: 1   MN-RIIILLFVALSIFSTLVYININYISTDEEPLE--VHEKEEPKVSILVTQKEIRRSQP 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           + P   E       ++   +              G L +  I KG  +  + + + G+  
Sbjct: 58  LIPKYYEQKFVHISDLDGYYYTLEDDLVVKP---GALFKDDISKGTYLTQDMISNPGDRD 114

Query: 120 GLSSLLPKGKRAATMDISISSAVG-GMIKPNDHVDVVMV----------RSLSERKPTVT 168
            +   L  G+     +++    V    + P D V  V                       
Sbjct: 115 YMYLSLNDGELPYFYEVTGIGVVQTATLTPGDKVSFVSTTSSKSNLVENGYGDIGDLVSR 174

Query: 169 VVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           V++S  RV+ +     + DS++      +  + L       L  AQ +  ++++    ++
Sbjct: 175 VIISGARVLQVIKGSEDSDSEDAEDKKYSLVIALNMRSVLKLEMAQKIGDVNII---PSE 231

Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKA 251
           +           D+ E    ++ ++ 
Sbjct: 232 IENRYLSIRS-SDLLETQFGVRELRG 256


>gi|218676248|ref|YP_002395067.1| hypothetical protein VS_II0470 [Vibrio splendidus LGP32]
 gi|218324516|emb|CAV25990.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
          Length = 258

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/266 (10%), Positives = 82/266 (30%), Gaps = 25/266 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ +      ++ + +I +        +    + E     +++L+++  +     
Sbjct: 1   MNRVIILFL---VALSIFSTLIYINTNYISTDEEPLGVQEQEEPKVSILVTQKAIKRSQP 57

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           +TP   +    P  ++   +              G L +  I +G  I  + + +  +  
Sbjct: 58  LTPKFYDKKFVPISDLDGYYYTLEDDLIVEP---GALFKEDISEGTYITQDMISNPADRD 114

Query: 120 GLSSLLPKGKRAATMDISISSAVG-GMIKPNDHVDVVMV----------RSLSERKPTVT 168
            +   L  G+     +++    V    +   D V  V                       
Sbjct: 115 YIYLSLNDGELPYFYEVTGIGVVQTATLTAGDKVSFVSTTSSKSNLVENGYGDIGDLVSR 174

Query: 169 VVLSNIRVIAIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           V++S  RV+ +    +            +  + L       L  AQ +  ++++    ++
Sbjct: 175 VIISGARVLQVIEGSEDSNSADSADKKYSLVIALNMRSVLKLEMAQKIGDVNII---PSE 231

Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKA 251
           +           D+ E    ++ ++ 
Sbjct: 232 IENRYLSIRS-SDLLETQFGVRELRG 256


>gi|306817241|ref|ZP_07450987.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307700399|ref|ZP_07637438.1| putative Flp pilus assembly protein CpaB [Mobiluncus mulieris
           FB024-16]
 gi|304649921|gb|EFM47200.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|307614384|gb|EFN93614.1| putative Flp pilus assembly protein CpaB [Mobiluncus mulieris
           FB024-16]
          Length = 198

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 16/183 (8%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                   L+++  +  G  + P  L         +   +           E+ G    V
Sbjct: 31  PRPAGTRALVARVPICAGCEINPKDLRERRLDPGALPQHYFVQ------AGEVAGKKAAV 84

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            +  G  +    L++     L+     G+ A  + +    AV G  K    V++      
Sbjct: 85  ALEPGTVVAPGLLLENSLADLA----PGEVAFALSVEDP-AVAGFSKTGQIVEIWSSSPS 139

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT-LELTPMQAKALVAAQSVAKLSLV 219
            + +    ++ +N+RV+ ++   DS            L  +   A+ +VAA+S   LS V
Sbjct: 140 VDNQ----LLATNVRVLGMEAAKDSLLGATSSKAIVYLGASEEAARKVVAAKSSHDLSFV 195

Query: 220 LRS 222
           LR 
Sbjct: 196 LRG 198


>gi|227876349|ref|ZP_03994461.1| hypothetical protein HMPREF0577_1762 [Mobiluncus mulieris ATCC
           35243]
 gi|269975913|ref|ZP_06182917.1| putative pilus assembly transmembrane protein [Mobiluncus mulieris
           28-1]
 gi|227842890|gb|EEJ53087.1| hypothetical protein HMPREF0577_1762 [Mobiluncus mulieris ATCC
           35243]
 gi|269935741|gb|EEZ92271.1| putative pilus assembly transmembrane protein [Mobiluncus mulieris
           28-1]
          Length = 198

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 16/183 (8%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                   L+++  +  G  + P  L         +   +           E+ G    V
Sbjct: 31  PRPAGTRALVARVPICAGCEINPKDLRERRLDPGALPQHYFVQ------AGEVAGKKAAV 84

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            +  G  +    L++     L+     G+ A  + +    AV G  K    V++      
Sbjct: 85  ALEPGTVVAPGLLLENSLADLA----PGEVAFALSVEDP-AVAGFSKTGQIVEIWSSSPS 139

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT-LELTPMQAKALVAAQSVAKLSLV 219
            + +    ++ +N+RV+ ++   DS            L  +   A+ +VAA+S   LS V
Sbjct: 140 VDNQ----LLATNVRVLGMEAAKDSLLGATSSKAIVYLGASEEAARKVVAAKSSHDLSFV 195

Query: 220 LRS 222
           LR 
Sbjct: 196 LRG 198


>gi|84385705|ref|ZP_00988736.1| hypothetical protein V12B01_26264 [Vibrio splendidus 12B01]
 gi|84379685|gb|EAP96537.1| hypothetical protein V12B01_26264 [Vibrio splendidus 12B01]
          Length = 251

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 77/231 (33%), Gaps = 21/231 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    L   +     A+   +    +      Q E V+ E   + ++V     D+    V
Sbjct: 1   MNRAVLFLFI-----AISLFLAFFYVSENFLSQEEVVVEEEKIRMVDVAFLNNDVVKASV 55

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119
           V   +L+  + PE  V             +    G L    +  G  +  +   + G+  
Sbjct: 56  VKQQLLDIQSLPETTVKA---RGYIPYTDVNIQAGALWSNDVEAGQVLNADYFSNPGDKD 112

Query: 120 GLSSLLPKGKRAATMDISISSAVGGM-IKPNDHVDVVMV----------RSLSERKPTVT 168
            +   L K +       S SS V  + I+P D V  V                    T  
Sbjct: 113 YMYLSLSKNEVPYYYTSSGSSIVEALPIQPQDRVSFVATTSSESNLLEDGYSDINNLTSN 172

Query: 169 VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           V++   RV+ +  + + D+     S   + LT  Q   L  AQ +  ++LV
Sbjct: 173 VIIDGARVLQVVESNNEDDEDKEHSLI-IALTVKQVLKLEMAQKIGAITLV 222


>gi|298345610|ref|YP_003718297.1| hypothetical protein HMPREF0573_10484 [Mobiluncus curtisii ATCC
           43063]
 gi|304390701|ref|ZP_07372654.1| SAF domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315657893|ref|ZP_07910773.1| SAF domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|298235671|gb|ADI66803.1| hypothetical protein HMPREF0573_10484 [Mobiluncus curtisii ATCC
           43063]
 gi|304326457|gb|EFL93702.1| SAF domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491690|gb|EFU81301.1| SAF domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 198

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 28/212 (13%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           ++   A++A  +A+ L  P                  V++ K ++  G  +T   +   A
Sbjct: 13  LAAGLAILAVFVAVTLFLPEKAAA------------TVVVVKHEVCAGCEITAQDVRLSA 60

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
                V         +      + G    V +  G  ++   LV+     L      G+ 
Sbjct: 61  LAPSAVPQDHFQKADR------VIGKTAAVSLTSGTVLQPALLVENAVEDL----RTGEV 110

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDS-DERV 189
           A  +++S   AV G  K    V++       + +    ++ SN RV+ +    ++     
Sbjct: 111 AFAIEVSDP-AVAGFSKTGQSVEIWCSGGNVDGQ----LLASNARVVGVKAVSENFLGTG 165

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
              S A L     +A+ ++AA++   LS V+R
Sbjct: 166 NSASIAYLAAPEDEARRVIAAKTDHDLSFVVR 197


>gi|163840497|ref|YP_001624902.1| hypothetical protein RSal33209_1753 [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953973|gb|ABY23488.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 227

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 17/193 (8%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
           T         L +  DL  G  ++ + +  +  P   +    +          +  G  +
Sbjct: 45  TPANQPVETALAASKDLPAGSTISASDMVLLKVPLAAIPQAALARPS------QAIGQQL 98

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
              + KG  +    L+      L +  P G  A  + +S +     ++ P   V VV+  
Sbjct: 99  AGALRKGQILTDTSLL---GQSLLTGTPAGSVAVPLRLSDA-GTAKLVAPGQLVTVVLTN 154

Query: 159 SLSERKPTVTVVLSN-IRVIAIDHNIDSDERVL------VGSTATLELTPMQAKALVAAQ 211
             S  +     VL+  I V+       +                 +  +  Q+K L  A 
Sbjct: 155 EDSTGRAENGTVLAASIPVLWSQTGAQTANGNSWLPGKEADGLVVVAASAEQSKTLAGAS 214

Query: 212 SVAKLSLVLRSIA 224
           +  K+SLVL S +
Sbjct: 215 TRGKISLVLVSRS 227


>gi|153836372|ref|ZP_01989039.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|149750274|gb|EDM61019.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
          Length = 251

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 15/222 (6%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
            +  VF  +   +A   VS    Q E V       F+ V      +     V  + ++  
Sbjct: 4   ALIFVFVAITMFLAFFYVSDFFDQPEPVAVVENEVFVQVAFVNRTVNKADPVNIDAIDIR 63

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKG 128
            F E               ++    G L    + +G  +    + + G    +   L K 
Sbjct: 64  EFSESEAKQHSYT---PYTSINIESGALWAKDVTEGTQLTSNLVSNPGEKDYMYLSLKKD 120

Query: 129 KRAAT-MDISISSAVGGMIKPNDHVDVVMV----------RSLSERKPTVTVVLSNIRVI 177
           +     +    S      I+P D V  V                    T  V++    V+
Sbjct: 121 QVPYYYLSQGSSIVEALPIQPGDRVSFVATTSSQSNLLESGYSDIDSLTSNVIIDGALVL 180

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
              +  + D+         + LT  Q   L  AQ +  ++LV
Sbjct: 181 QAMNVSEDDDSSNEDYGLIIALTVKQVLKLEMAQKIGAITLV 222


>gi|315654208|ref|ZP_07907116.1| SAF domain protein [Mobiluncus curtisii ATCC 51333]
 gi|315491243|gb|EFU80860.1| SAF domain protein [Mobiluncus curtisii ATCC 51333]
          Length = 198

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 77/212 (36%), Gaps = 28/212 (13%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70
           ++   A++A  + + L  P                  V++ K ++  G  +T   ++  A
Sbjct: 13  LAAGLAILAVFVVVTLFLPEKAAA------------TVVVVKHEVCAGCEITAQNVKLSA 60

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
                V         +      + G    V +  G  ++   LV+     L      G+ 
Sbjct: 61  LAPSAVPQNHFQKADR------VIGKTAAVSLTSGTVLQPALLVENAVEDL----RTGEV 110

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDS-DERV 189
           A  +++S   AV G  K    V++       +      ++ SN RV+ +    ++     
Sbjct: 111 AFAIEVSDP-AVAGFSKTGQSVEIWCSGGNVDG----ELLASNARVVGVKAVSENFLGTG 165

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
              S A L     +A+ ++AA++   LS V+R
Sbjct: 166 NSASIAYLAAPEDEARRVIAAKTDHDLSFVVR 197


>gi|271969844|ref|YP_003344040.1| hypothetical protein Sros_8655 [Streptosporangium roseum DSM 43021]
 gi|270513019|gb|ACZ91297.1| hypothetical protein Sros_8655 [Streptosporangium roseum DSM 43021]
          Length = 205

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 16/180 (8%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           +     + VL +  DL  G V+    L+ VA   + V DG +           + G ++ 
Sbjct: 36  KPDTASVTVLAAARDLPSG-VLEAADLKAVALRPDTVPDGAVK------PGTAIAGRVLA 88

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
            P+ +G+P+   +++      L +    G  A  + ++       ++ P D VDV+   S
Sbjct: 89  GPMRRGEPLTDARILGPS---LLAAHGPGTVATPVRVADPET-ARLLSPGDVVDVLAAPS 144

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
             E       V  ++ V+        D     G+   L  T  QA  L +AQ+   LS+ 
Sbjct: 145 TWEGAAPARTVAEDVTVLTT-----PDGEADRGALLVLATTSDQAVELASAQAGGHLSIT 199


>gi|260892674|ref|YP_003238771.1| SAF domain protein [Ammonifex degensii KC4]
 gi|260864815|gb|ACX51921.1| SAF domain protein [Ammonifex degensii KC4]
          Length = 214

 Score = 77.9 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 85/240 (35%), Gaps = 42/240 (17%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   +   ++      + AG +A  L                     VL++K D+     
Sbjct: 1   MTRQKFFFLMAVLAGLVAAGSLAWLLS-------------AFLPQKTVLVAKSDVPARGP 47

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR---G 117
           VT   +E V+ P+  +    + +        EL G + R  I  G  +R   L  +   G
Sbjct: 48  VTE--VEAVSLPKAGLPPDAVTE------RGELAGKVARGFIPAGTVLRRAMLQPKWAAG 99

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
             G  + +  G R   + ++  + VGG +   D +DV +V     R     +V +++ V 
Sbjct: 100 AAGALAEIGPGYRMLALPLTADTTVGGCVASGDRIDVYLV-----RGGRAELVAADVLVF 154

Query: 178 A------------IDHNIDSDERVLVGSTATLELTPMQAKALVAA-QSVAKLSLVLRSIA 224
           +                   D       +  + + P +A+ LV+A     KL  VLR + 
Sbjct: 155 SGPGVPSREGKKGFGALTGGDREQEKRDSLVVVVRPDEAERLVSALGGDGKLVAVLRPLD 214


>gi|227501477|ref|ZP_03931526.1| SAF domain protein [Corynebacterium accolens ATCC 49725]
 gi|227077502|gb|EEI15465.1| SAF domain protein [Corynebacterium accolens ATCC 49725]
          Length = 241

 Score = 77.5 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 20/228 (8%)

Query: 19  AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
             ++   +     +           +   VL+   DL  G  ++   +     P  ++  
Sbjct: 24  GVLVRRAIALVLLIAALASAVSRAKELPQVLVFSHDLPAGAELSAADVSLERLPSSSIPS 83

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR--------GNGGLSSLLPKGKR 130
             + D     A  +L G ++     KG+ +  ++L+ +         +G   S      R
Sbjct: 84  SALAD-----APSDLAGRIITAAAGKGEVVTSQRLLGQELVSSLVANSGSADSKEGGSGR 138

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-TVVLSNIRVIAIDHNIDSDERV 189
              + ++    +   +   D VD+V     ++ +P    V+ S  RV++        E  
Sbjct: 139 MIPVKLADPDIIP-HLHHGDTVDIVTANDATDSEPATARVIASGARVVSTTTA----EGE 193

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           +  +T  L L    A  + AA     L++V+       P +  D+D  
Sbjct: 194 VSSATVLLALPNEHANDVAAASLNQPLTVVIVG-DRAQPQTPVDADPA 240


>gi|220927571|ref|YP_002504480.1| SAF domain protein [Clostridium cellulolyticum H10]
 gi|219997899|gb|ACL74500.1| SAF domain protein [Clostridium cellulolyticum H10]
          Length = 218

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 78/221 (35%), Gaps = 25/221 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++    + +  +   +I    +  +      +  E   K ++V+++  D+  G V
Sbjct: 1   MSKRLIIK---TVLICIGLFLIMDSALFAYIFTKYPLNME---KQVSVVVATADIKKGTV 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    L      E  V      D+        ++G      I K D IR   L+++ +  
Sbjct: 55  IEERFLRKKDVWESTVNSSIERDI------GNIEGKKALTDIYKDDYIRSCDLLEKKDWY 108

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI- 179
                   +R   +  ++   +  +I+   +VD+   R   +       +L  I+V  + 
Sbjct: 109 -----KDDERIIVLPTNMEERLANLIRKGSYVDI---RLQKDSGEATEDILYKIKVEDVL 160

Query: 180 DHNIDSDERVLVGSTAT----LELTPMQAKALVAAQSVAKL 216
           D    + +     ++ T    L L   + + + +A    +L
Sbjct: 161 DETGTALDSKSAVNSKTAYFKLVLGKKERQKIYSAAKNGRL 201


>gi|328884723|emb|CCA57962.1| hypothetical protein SVEN_4676 [Streptomyces venezuelae ATCC 10712]
          Length = 235

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 72/196 (36%), Gaps = 21/196 (10%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +             KGD+A    +  N  E +  P+  + +  + D+        ++G +
Sbjct: 33  VNSKVGPETTAYRIKGDVAPYTPLRANQFEKITMPKRWLSETAVTDLRV------IEGRI 86

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               +  G  ++ + +V+R        L  G++   + I  ++ V G I     V++   
Sbjct: 87  AVTRLKAGSLLQSDMIVERPE------LQPGQQEIAIMIDAATGVAGKITAGATVNIYAT 140

Query: 158 --RSLSERKPTVTVVLSNIRVIAID------HNIDSDERVLVGSTATLELTPMQAKALVA 209
                 ++     ++++  RV+ +        +     R       +  L+ + A+ +  
Sbjct: 141 FAGEKKDQPAQSRMIVAGARVLDVGKLTPIRESSQGSARTNDAVPISFALSTLDAQRVAY 200

Query: 210 AQSVAK-LSLVLRSIA 224
           A+S A+ + L L +  
Sbjct: 201 AESFAEHVRLALVAPT 216


>gi|228968939|ref|ZP_04129887.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790746|gb|EEM38399.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 267

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 78/236 (33%), Gaps = 42/236 (17%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           + V     LVA I             E     +      V  SK D+     +T ++L+ 
Sbjct: 13  VSVLIAVGLVATIAGY----------ENYRINSAINPTKVYYSKVDIPPRTKITKDMLQE 62

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL--P 126
              P + +    I +V        ++G      + K   +  +K+V +     +++L   
Sbjct: 63  RVIPGDAIAPNAITNVKDLEGKYTVNG----FGVSKNSLLYKDKVVPKDELPDAAILNLK 118

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-----VVLSNIRVIAI-- 179
           K + A  + + I ++ G  I P+ +VD+     +              V  ++RV ++  
Sbjct: 119 KSEVAFPLLVDIETSSGNSIIPDSYVDLYFKGKVKNESDHTEKPIFGRVAKHVRVTSVKD 178

Query: 180 -------------------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
                              D+  +  +   +    T  ++  + + L     + ++
Sbjct: 179 SNATNVFDPKSVEVDGSYKDNLNNEAKNRPLAKIYTFAVSDEENQLLNKGALIGEI 234


>gi|86360427|ref|YP_472315.1| hypothetical protein RHE_PE00151 [Rhizobium etli CFN 42]
 gi|86284529|gb|ABC93588.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 309

 Score = 77.1 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 8/154 (5%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           ++ + +  L+ G++           TE V  E  A     L     +  G  +TP++L  
Sbjct: 5   LIAAVIVGLITGVLLYFW-------TESVKNEQVAYAFMRLQPDKKVTRGQAITPDMLAE 57

Query: 69  -VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127
            V  PE       +         + L        I  G  +  +   D   G L++++  
Sbjct: 58  PVMLPESFGPLAKLAVPAASAYQEWLKDRTAAADIPAGSVLLFQYFDDTDGGRLTTMIAP 117

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           GKRA T+ ++ + AVG  ++P  +VD++      
Sbjct: 118 GKRALTLPVNAAEAVGHFVEPGSYVDILGTVDEP 151



 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGST----ATLELTPMQAKALVAA--QSVAKLS 217
           +      L N++V+A+      +  V   ++     T+E+TP +A+ L+ A  Q+   L+
Sbjct: 228 RVVTRTFLQNVKVLAVGAATTPEGAVTKANSSYNHVTVEVTPSEAEMLIFAMGQANGSLN 287

Query: 218 LVLRSIADLNPSS 230
           LVLR+  D +   
Sbjct: 288 LVLRNPTDNSVED 300


>gi|283787692|ref|YP_003367557.1| tight adherence protein RcpC [Citrobacter rodentium ICC168]
 gi|282951146|emb|CBG90837.1| putative tight adherence protein RcpC [Citrobacter rodentium
           ICC168]
          Length = 290

 Score = 76.7 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 78/243 (32%), Gaps = 30/243 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV------QTEEVITENPAKFINVLISKGD 54
           M+   L+  +   +  +    + + + SP              I +   + I+V +++ D
Sbjct: 1   MRKKSLVVYIYIVMIFVGLAGLFLIMNSPQSAESVTDKAPAPAIKKEEQEKISVAVAERD 60

Query: 55  LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114
           L    V+T             +  G  +        + +    + VP+ KG  I    LV
Sbjct: 61  LPAKAVLTAEDFRIKMV---EITRGGHEKASFALGNKSIKDYALNVPVAKGTFIPGSALV 117

Query: 115 DRGNG-GLSSLLPKGKRAATMDISISSAVG-GMIKPNDHVDVVMVRSLSE---------- 162
             G    +S  L  G    T  +S +       I+    +D+ MV    +          
Sbjct: 118 KPGTTEYISLFLRPGHVLYTFRLSEADNYLFDNIRAGQFIDIFMVYGKKKENGKEMLVSP 177

Query: 163 ----RKPTVTVVLSNIRVIAIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSV 213
                   +  ++ N RV+A+       ++        GS    EL     K L   +  
Sbjct: 178 STTIESTRLKPLMKNRRVLALRPTKIVTDKNGISTREGGSQLVAELNEQDIKVLKGLEGK 237

Query: 214 AKL 216
           AK+
Sbjct: 238 AKI 240


>gi|296132328|ref|YP_003639575.1| hypothetical protein TherJR_0807 [Thermincola sp. JR]
 gi|296030906|gb|ADG81674.1| hypothetical protein TherJR_0807 [Thermincola potens JR]
          Length = 290

 Score = 76.7 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 26/257 (10%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + + + I    +  L+  +    L   +  Q  ++          V+++K  +     +T
Sbjct: 1   MKKWLKITFVLITGLLLAVTTFILNKSYIAQHTDLK--------PVVVAKETVTPYNPIT 52

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG--G 120
               E V     ++ +  + D       +   G L    I  GD IR  ++VD  +   G
Sbjct: 53  K--YELVKKVRSSIPEDAVTDPKYLEKKKWYAGKL---GIGAGDIIRKSRIVDEDSNPFG 107

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV-------LSN 173
            +  L   K    ++ ++  + G  IKP   V+  + +  ++R    TV+       L N
Sbjct: 108 KAISLTDNKVLVGVETNLVKSAGANIKPGVKVNAFVFKPANDRSEQDTVITPNENPLLGN 167

Query: 174 IRVIAI----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           I V  +      N+    +  + + A LE T   AK LV  Q   K+ L    +     S
Sbjct: 168 ILVKQVLNSQATNVAGKGKEAMPTVAVLETTVPVAKLLVLYQETGKIYLAPVGVDIKTAS 227

Query: 230 SSEDSDVWDVQEEGKEI 246
              +    +     K +
Sbjct: 228 KIAEHKQTNGAPVSKPV 244


>gi|325964114|ref|YP_004242020.1| Flp pilus assembly protein CpaB [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470201|gb|ADX73886.1| Flp pilus assembly protein CpaB [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 241

 Score = 76.7 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 73/204 (35%), Gaps = 24/204 (11%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTP--NILEWVAFPEENVFDGFIDDVHQPNA 89
           VQ      +   + +NVL+ K  +  G   +     L   + P+  V  G +       +
Sbjct: 26  VQGASARAQAGLEPVNVLVVKEKVPAGTKTSDLSAKLRVDSIPKSAVPAGALT------S 79

Query: 90  MQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKP 148
           + + +G +  V +  G+ +   +LVD  +    +  +P+G    T+ +S    +GG ++ 
Sbjct: 80  LDQQEGKVTAVALEPGEQLMATRLVDPRDLAPGTVPVPEGLEEVTLLLSPERILGGRLEA 139

Query: 149 NDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-------------ERVLVGSTA 195
            D V +       + +    ++  ++ + A+                    E     +  
Sbjct: 140 GDTVTIYSSFDKEDGQ--TGLLFHDVLITAVQKAPSDSKNNSGSGSSEPAVEMPNGSAFI 197

Query: 196 TLELTPMQAKALVAAQSVAKLSLV 219
           T   +   A  L+ +    KL L 
Sbjct: 198 TFARSDSDASKLIYSAEFGKLWLA 221


>gi|303233382|ref|ZP_07320051.1| Flp pilus assembly protein CpaB [Atopobium vaginae PB189-T1-4]
 gi|302480511|gb|EFL43602.1| Flp pilus assembly protein CpaB [Atopobium vaginae PB189-T1-4]
          Length = 335

 Score = 76.7 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 76/210 (36%), Gaps = 18/210 (8%)

Query: 28  SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87
           +      E++      + + +++S   L VG V+ P+ +    +                
Sbjct: 30  ADAQKMREDLQARYGGETVELVVSTKALRVGDVIEPSDVVKRDWVSMLAPADAYTR---- 85

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
             M+++ G  V+VP+ +  PI                +P+G  A ++ ++    +G  I 
Sbjct: 86  --MEDVVGKTVKVPLSENAPITQTTFAAMDEQY---SIPEGYVALSIPLTEKLGLGQHIA 140

Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL 207
           P+  V      +    +    ++ S++RV+ +    D         +  + + P     +
Sbjct: 141 PHTAV-----VAYEATQKASDLITSDMRVLYVQ---DEARGQFSSPSCVVAVKPQDVGRI 192

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237
           + AQ+   L  V     D    +++ S+  
Sbjct: 193 LTAQAKNSLKFV-VPAQDTTSDNADASNAA 221


>gi|319937910|ref|ZP_08012310.1| hypothetical protein HMPREF9488_03146 [Coprobacillus sp. 29_1]
 gi|319806816|gb|EFW03455.1| hypothetical protein HMPREF9488_03146 [Coprobacillus sp. 29_1]
          Length = 223

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 80/223 (35%), Gaps = 35/223 (15%)

Query: 1   MKLT---RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           MKL    ++  I      A+V+  +    +                   +VL+    +  
Sbjct: 1   MKLKGKNKIFTIFSIVFAAIVSISLYFAFIGN---------------MTDVLVVNQTVRG 45

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G  +T ++L      + ++ D ++      +   E+ G    + +  G  +  + +    
Sbjct: 46  GTQITESMLSVKKVDKSSLPDNYLK----ASLRDEVVGKYFDLGLTSGGVLTKDNISV-- 99

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
             G +SL+  G    +M           +   DH+++V+  S    K   T+   N+ V 
Sbjct: 100 -SGKASLIQSGYILYSMK--DLETYPNGLVTGDHLNIVVASSSDGNKYVKTI--ENVPVA 154

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           ++    +    + V       +TP  A+ +  AQ+   +S+ L
Sbjct: 155 SVHMEENVITGIEVY------VTPEAAQLIAFAQANGDVSVGL 191


>gi|28900575|ref|NP_800230.1| hypothetical protein VPA0720 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365455|ref|ZP_05777992.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260877520|ref|ZP_05889875.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|260897539|ref|ZP_05906035.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|260901741|ref|ZP_05910136.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|28808955|dbj|BAC62063.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087131|gb|EFO36826.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|308090892|gb|EFO40587.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|308108967|gb|EFO46507.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308114362|gb|EFO51902.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|328470517|gb|EGF41428.1| pilus assembly protein CpaB [Vibrio parahaemolyticus 10329]
          Length = 250

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 16/222 (7%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
            +  VF  +   +A   VS    Q E V       F+ V      +     V  + ++  
Sbjct: 4   ALIFVFVAITMFLAFFYVSDFFDQPEPVAVVENEVFVQVAFVNRTVNKADPVNIDAIDIR 63

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKG 128
            F E               +++   G L    + +G  +    + + G    +   L K 
Sbjct: 64  EFSESEAKQHSYT---PYTSIKIESGALWAKDVTEGTQLTSNLVSNPGEKDYMYLSLKKD 120

Query: 129 KRAAT-MDISISSAVGGMIKPNDHVDVVMV----------RSLSERKPTVTVVLSNIRVI 177
           +     +    S      I+P D V  V                    T  V++    V+
Sbjct: 121 QVPYYYLSQGSSIVEALPIQPGDRVSFVATTSSQSNLLESGYSDIDSLTSNVIIDGALVL 180

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
              +  + D          + LT  Q   L  AQ +  ++LV
Sbjct: 181 QAMNVSEDDSSNEDYGLI-IALTVKQVLKLEMAQKIGAITLV 221


>gi|308234323|ref|ZP_07665060.1| Flp pilus assembly protein CpaB [Atopobium vaginae DSM 15829]
          Length = 272

 Score = 75.2 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 76/228 (33%), Gaps = 17/228 (7%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
           A  + S      ++ I       + ++++   L +G  +    +    +  +        
Sbjct: 25  AQSVRSDAQKARDDAIASYGGDVVRLVVTAHPLQIGDTIKAEDIVVRDWVSDLAPKDAYL 84

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV 142
           +        ++ G  V+V + +  P+      +  +     ++P G+ A ++ ++    +
Sbjct: 85  NSD------DVIGKEVKVAVGENVPLSTMHFTESDDE---LVIPNGRVALSLPMNERLGI 135

Query: 143 GGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPM 202
           G  I P   V             T  ++  ++  + +     +     + +   L + P 
Sbjct: 136 GLHITPRTQV-----LGYDTTNKTTHLITKDMIALCVKEAQPA---QNIPAQLVLAVYPT 187

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
               +++A +   L LV+ ++   +          +  +E      I+
Sbjct: 188 DVTRVLSAAATQSLRLVIPAVDVQDLKDDSQQVESEHTKEISSKSAIR 235


>gi|226310155|ref|YP_002770049.1| hypothetical protein BBR47_05680 [Brevibacillus brevis NBRC 100599]
 gi|226093103|dbj|BAH41545.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 279

 Score = 75.2 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 89/233 (38%), Gaps = 29/233 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   ++ +V+S + A +AG + ++ +   + Q          + + +  +  D+    ++
Sbjct: 5   KRRAIIFLVLSFLLAALAGFLFLQKIKDMNAQL--------GEMVEIYEANADIPSRALI 56

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
            P+ L     P++   D ++ D         L   +  VP+ KGD I    +        
Sbjct: 57  QPDQLTVREIPKKYADDSYVIDKAS------LKNQVTIVPLSKGDIITKNIMKPAN---- 106

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
             +  +  R  T+  S +      ++  D VD+++   +S  KP   V + ++ V  +  
Sbjct: 107 -VVRDENNRLVTVFSSNNIVFDQELEALDRVDIIISHEVS-GKPVTEVFMKDVPVAMVAK 164

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL---RSIADLNPSSS 231
           + +S +         LEL   +A   +  Q  A++  +L       DL     
Sbjct: 165 SENSFKG------VALELPFEEAPKFIHQQHYAQMVRILKANVGKGDLGIPDP 211


>gi|296271147|ref|YP_003653779.1| SAF domain-containing protein [Thermobispora bispora DSM 43833]
 gi|296093934|gb|ADG89886.1| SAF domain protein [Thermobispora bispora DSM 43833]
          Length = 212

 Score = 75.2 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 30/193 (15%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
            P + + VL +  DL  G  ++ + +  V  P + + DG +           + G +V  
Sbjct: 32  APPRGVPVLAAARDLP-GGRLSASDVTVVRLPPDALPDGVLR------PGTPMAGRVVAG 84

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
           P+ +G+PI   +L+     G+     +G  A  + I+ +  V  ++ P D VDV+     
Sbjct: 85  PMRRGEPITDVRLLGP---GILRAQGQGLVATPVRIADAR-VAELLSPGDVVDVLAAFDG 140

Query: 161 --------------SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKA 206
                             P    V   +RV+A             G+   L  T  QA  
Sbjct: 141 AALGGAYPDDAASGGTAAPASAPVARQVRVLA-----RPPGGDGEGALLVLATTVDQAAR 195

Query: 207 LVAAQSVAKLSLV 219
           L  AQ+  +L++ 
Sbjct: 196 LAHAQAHGRLAVA 208


>gi|284033647|ref|YP_003383578.1| SAF domain-containing protein [Kribbella flavida DSM 17836]
 gi|283812940|gb|ADB34779.1| SAF domain protein [Kribbella flavida DSM 17836]
          Length = 203

 Score = 75.2 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 69/187 (36%), Gaps = 20/187 (10%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
               ++  PA    VL +  DL  G+      +  +  P   V  G +          +L
Sbjct: 32  ALVAVSPPPAASTPVLAAARDLPGGLTPAAGDIRTLRLPTSTVPAGVL------PPGTDL 85

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
              ++   +  G+P+   + +        + +P G  A  + +  +  +  +++P D +D
Sbjct: 86  SHRVLATAVRSGEPLTDARFLTP------TAVPPGLLAYPLRLDDAD-IAALLRPGDRID 138

Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213
           +    + +    + T +   + ++A+            G+   L  +P  A  L  A + 
Sbjct: 139 LYAASATA--DASATRLAEAVPILALPAPTR-----STGALVVLAASPGTAARLAQASAN 191

Query: 214 AKLSLVL 220
            +L++ L
Sbjct: 192 TRLTVAL 198


>gi|302536562|ref|ZP_07288904.1| flp pilus assembly protein CpaB [Streptomyces sp. C]
 gi|302445457|gb|EFL17273.1| flp pilus assembly protein CpaB [Streptomyces sp. C]
          Length = 207

 Score = 75.2 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +     K D+A    +T    E V  P+  + D  +DD      +  L G +
Sbjct: 33  VNSKVGAEVVAYRVKSDIAPYSALTAGQFEEVKVPKRWLSDTAVDD------LGALRGKI 86

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               + KG  ++ +  VD+        L  G++   + I  ++ V G I     V+++  
Sbjct: 87  ALTTLKKGSLLQSDMFVDKP------QLQAGEQEIAIMIDAATGVAGKITSGAKVNIIAT 140

Query: 158 RSLSERKPTVT--VVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAA 210
              ++        ++++N RV+ +            +        T  L     + +  A
Sbjct: 141 FKGAKETDPSRSVIIVANARVLGVGKLTALDKDSDRKGPAEAVPITFALNTKDTQRVAYA 200

Query: 211 QSVAK 215
           +S A+
Sbjct: 201 ESFAE 205


>gi|257790639|ref|YP_003181245.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
 gi|257474536|gb|ACV54856.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243]
          Length = 432

 Score = 74.8 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 7/178 (3%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
            ++  +I +N A  +NV+++  D+A G  +T   LE  A P+          V       
Sbjct: 242 AESSAIIAKNEANSVNVVVTNRDVAAGETITEADLETQAVPKAYCPTDAATKVSDVAGHT 301

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
            L                           ++S +  G  A  + +  S ++  +++  D 
Sbjct: 302 SLTTQTAGTS-----ISLSSLQASSSPAHITSAIEDGHVAIALSLDSSKSLSPLLRVGDR 356

Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209
           V+V+ V S      +   V +N+++IA+D  +         S  TL++T  QA A+VA
Sbjct: 357 VNVMAVVS-DGATSSAETVCANVKIIALDSALS-GSPDAGYSLVTLDVTEDQAAAIVA 412


>gi|117927367|ref|YP_871918.1| hypothetical protein Acel_0157 [Acidothermus cellulolyticus 11B]
 gi|117647830|gb|ABK51932.1| hypothetical protein Acel_0157 [Acidothermus cellulolyticus 11B]
          Length = 238

 Score = 74.8 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 75/185 (40%), Gaps = 14/185 (7%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
            + +T  P   ++V++++ DL  G  +    +   AFP      G +  +       E+ 
Sbjct: 54  VQSLTPRPPATVDVVVAQRDLPAGATIRDADVRLAAFPTNLQPAGTLHRLV------EVT 107

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           G  +  P+ +G+P+   +       G  +    G  A  + ++   AV  +  P   VDV
Sbjct: 108 GRRLISPVRRGEPLTDVRF------GGGAHPAPGLVAVPIHVAD-GAVTKLFSPGMSVDV 160

Query: 155 VMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
           +     +       VV +++ V+A+  +  SD      +   +  +  QA+ L  AQ+ +
Sbjct: 161 LAADPDAPLGTPAVVVATDVDVLAV-PSNGSDPAGDGSALLFVAASAWQARLLAQAQARS 219

Query: 215 KLSLV 219
            L L 
Sbjct: 220 PLVLA 224


>gi|209546007|ref|YP_002277897.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538864|gb|ACI58797.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 312

 Score = 74.4 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 8/152 (5%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           ++ + +  L+ G++           TE V  E  A     L     +  G  +TP++L  
Sbjct: 5   LIAAVIVGLITGVLLYFW-------TESVKNEQVAYAFMRLQPDRKVTRGQAITPDMLAE 57

Query: 69  -VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127
            V  PE       +         + L        I  G  +  +   D   G L++++  
Sbjct: 58  PVMLPESFGALAKLAVPAASAYQEWLKDRTAAADIPAGSVLLFQYFDDNDGGRLTTMIAP 117

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           GKRA T+ ++ +SAVG  ++P  +VD++    
Sbjct: 118 GKRALTLPVNAASAVGHFVEPGSYVDILGTVD 149



 Score = 59.4 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGST----ATLELTPMQAKALVAA--QSVAKLS 217
           +      L N++V+A+     ++  V   ++     T+E+TP +A+ L+ A  QS   L+
Sbjct: 231 RVVTRTFLQNVKVLAVGAATTAEGAVTKANSTYNNVTVEVTPAEAEMLIFAMGQSNGSLN 290

Query: 218 LVLRSIADLNPSS 230
           LVLR+ AD     
Sbjct: 291 LVLRNPADNTVEE 303


>gi|33152387|ref|NP_873740.1| flp operon protein C [Haemophilus ducreyi 35000HP]
 gi|21326706|gb|AAL92466.1| unknown [Haemophilus ducreyi]
 gi|33148610|gb|AAP96129.1| flp operon protein C [Haemophilus ducreyi 35000HP]
          Length = 278

 Score = 74.4 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 24/220 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIA----------MRLVSPHHVQTEEVITENPAKFINVLI 50
           M    L  + +  +     G+                     +  +       K I  + 
Sbjct: 1   MNYRSLFILSIIILAVGFGGLFFLPDDQLNTPQQTTTQGEVAKAPQSKPSQSEKVITTVT 60

Query: 51  SKGDLAVGMVVTPNILEWVA--FPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
              D+  G ++ P          PE + + +  + ++    A + L G LV   + KG  
Sbjct: 61  LNHDIEKGTLLQPEDYTVSELTVPENSPLVESDVKELVDSAANKSLQGFLVAENLSKGSL 120

Query: 108 IRLEKLVDRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMV----RSL 160
           +  + L+D  +    L S+ P+ + A  + I      +   I+  D V V  V       
Sbjct: 121 LNQKVLIDPEDPRFILMSIDPQQEVAYRIYIKEAERYLLDSIRGGDMVSVYSVQQDLGRP 180

Query: 161 SERKPTVTVVLSNIRVIAID----HNIDSDERVLVGSTAT 196
              + ++  +  N +V+ +        D +       T T
Sbjct: 181 ERDQNSLAKIAENFKVLKVKKFSPQQADPNNDENTKKTDT 220


>gi|306835635|ref|ZP_07468644.1| conserved hypothetical protein [Corynebacterium accolens ATCC
           49726]
 gi|304568479|gb|EFM44035.1| conserved hypothetical protein [Corynebacterium accolens ATCC
           49726]
          Length = 241

 Score = 74.4 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 75/207 (36%), Gaps = 20/207 (9%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
                 +   VL+   DL  G  ++   +     P  ++    + D     A  +L G +
Sbjct: 43  AISRAKELPQVLVFSHDLPAGAELSAADVSLERLPSSSIPSSALAD-----APSDLAGRI 97

Query: 98  VRVPILKGDPIRLEKLVDR--------GNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
           +     KG+ +  ++L+ +         +G   S      R   + ++    +   +   
Sbjct: 98  ITAAAGKGEVVTSQRLLGQELVSSLVTESGSADSKEGGSGRMIPVKLADPDIIP-HLHHG 156

Query: 150 DHVDVVMVRSLSERKPTV-TVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208
           D VD+V     ++ +P    V+ S  RV++        E  +  +T  L L    A  + 
Sbjct: 157 DTVDIVTASDATDSEPATARVIASGARVVSTTTA----EGEVSSATVLLALPNEHANDVA 212

Query: 209 AAQSVAKLSLVLRSIADLNPSSSEDSD 235
           AA     L++V+       P +  D+D
Sbjct: 213 AASLNQPLTVVIVG-DRAQPQAPVDAD 238


>gi|328943875|ref|ZP_08241340.1| hypothetical protein HMPREF0091_10565 [Atopobium vaginae DSM 15829]
 gi|327491844|gb|EGF23618.1| hypothetical protein HMPREF0091_10565 [Atopobium vaginae DSM 15829]
          Length = 255

 Score = 74.4 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 76/228 (33%), Gaps = 17/228 (7%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
           A  + S      ++ I       + ++++   L +G  +    +    +  +        
Sbjct: 8   AQSVRSDAQKARDDAIASYGGDVVRLVVTAHPLQIGDTIKAEDIVVRDWVSDLAPKDAYL 67

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV 142
           +        ++ G  V+V + +  P+      +  +     ++P G+ A ++ ++    +
Sbjct: 68  NSD------DVIGKEVKVAVGENVPLSTMHFTESDDE---LVIPNGRVALSLPMNERLGI 118

Query: 143 GGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPM 202
           G  I P   V             T  ++  ++  + +     +     + +   L + P 
Sbjct: 119 GLHITPRTQV-----LGYDTTNKTTHLITKDMIALCVKEAQPA---QNIPAQLVLAVYPT 170

Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
               +++A +   L LV+ ++   +          +  +E      I+
Sbjct: 171 DVTRVLSAAATQSLRLVIPAVDVQDLKDDSQQVESEHTKEISSKSAIR 218


>gi|326202872|ref|ZP_08192739.1| SAF domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325986949|gb|EGD47778.1| SAF domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 216

 Score = 74.0 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 76/224 (33%), Gaps = 31/224 (13%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           M    ++    I +     L + I A                 N  K + V+++  ++  
Sbjct: 1   MSKRLIIKTILICLGLFLILDSAIFAYIFTK---------YPINTEKTVAVVVATENIKE 51

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           G V+    L         V  G   ++        + G      I + D IR   L++R 
Sbjct: 52  GTVIEEGFLRKKQVYASGVNSGVETEI------GNVAGKKALTNIHRDDYIRAHDLLERK 105

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
           +          +R   + +S+   +  +I+   +VD+ + R  SE       +L  I+V 
Sbjct: 106 DWY-----RDDERIIILPVSMEERLANLIRKGSYVDIRLQRDTSE---VTEDILYKIQVK 157

Query: 178 AIDHNID---SDERVLVGSTATLELTP--MQAKALVAAQSVAKL 216
            +  +       +  +   TA L+L       + + +A    KL
Sbjct: 158 DVLDDAGIALDSKSAVNSKTAYLKLILGKTDREKIYSASRSGKL 201


>gi|260892668|ref|YP_003238765.1| SAF domain protein [Ammonifex degensii KC4]
 gi|260864809|gb|ACX51915.1| SAF domain protein [Ammonifex degensii KC4]
          Length = 221

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 78/217 (35%), Gaps = 28/217 (12%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + +++S +F + AG+     +                  + V+++  D+ VG VV P+ +
Sbjct: 21  LSVLMSALFGVAAGLAVWFALQ------------VARPTVPVVVALRDMQVGHVVRPDEV 68

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGLSSL 124
               +P   V    +    +        G ++     +GD +R ++L   G     L SL
Sbjct: 69  AVRKYPPVAVPPDAVRKPEEAVGKTVTGGAVL-----QGDVLRKKRLSAEGSLEASLKSL 123

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184
            P G  A  +    +  + G ++  D VD+            V  V+    ++       
Sbjct: 124 APPGWVAVQLPEGSAQGMLG-LRRGDRVDIYAETPTPGGAKQVLPVVRGAVLLLTPFQ-- 180

Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVL 220
                       + + P  A+AL A      K+SLVL
Sbjct: 181 -----EGAKCYVVAVPPDSAQALAAIDVYGKKVSLVL 212


>gi|308178037|ref|YP_003917443.1| hypothetical protein AARI_22500 [Arthrobacter arilaitensis Re117]
 gi|307745500|emb|CBT76472.1| hypothetical protein AARI_22500 [Arthrobacter arilaitensis Re117]
          Length = 236

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 18/195 (9%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
            V +        V++   D+  G  +T N L       +        D     +++ + G
Sbjct: 52  NVFSSGQLSQREVVVVISDIPAGSQITSNQLAVQTVRLDP------QDDEVFESLEPVSG 105

Query: 96  VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
               V +  G  +R   LV      L +  P+G  A  + +S  + V  ++ P   VD+V
Sbjct: 106 QRAAVALPAGTVLRSYSLVGPQ---LLAGSPQGTVAVPLRLSDPATVT-LLHPGQLVDIV 161

Query: 156 MVRSLS-ERKPTVTVVLSNIRVIAIDHNID-------SDERVLVGSTATLELTPMQAKAL 207
           +      E++     +   + V+ +  N         S  R        +      +  L
Sbjct: 162 LTTGDGFEKQINSETIAKAVPVLWVPDNASTSEFGMLSGTRQSGEGIVVVAAASSLSDDL 221

Query: 208 VAAQSVAKLSLVLRS 222
             A S  K+S VL +
Sbjct: 222 AGAVSRGKVSAVLVN 236


>gi|284991842|ref|YP_003410396.1| SAF domain-containing protein [Geodermatophilus obscurus DSM 43160]
 gi|284065087|gb|ADB76025.1| SAF domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 244

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 79/232 (34%), Gaps = 24/232 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+   L  +    + A  A ++   +      +  +       + ++VL+    +A G  
Sbjct: 1   MRRRLLAALAALLLAATGAVVLLAYV------RGADARALAGVQTVDVLVVDRPVAEGTP 54

Query: 61  VT--PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
                 ++     P +    G + D      + EL G +  V +  G+ +   +    G+
Sbjct: 55  GEELAELVRTERLPAKAAVPGAVTD------LDELAGRVATVDLQPGEQLLAARFAVPGD 108

Query: 119 GGLSSLLP--KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
            G+   +P  +G    ++ +    AVGG +   D V V +      R     V+++ ++ 
Sbjct: 109 LGVPGTVPAPEGTAEVSLLLEPQRAVGGRLAAGDTVGVHVSLDGRTRAVLSRVLVTQVQG 168

Query: 177 I--------AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                      D               TL L P  A+A+V       + L L
Sbjct: 169 APVAVADGEGTDTASSGGAAPSASLMVTLGLRPEAAEAVVFGMEHGTVWLSL 220


>gi|134097376|ref|YP_001103037.1| hypothetical protein SACE_0770 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291009066|ref|ZP_06567039.1| hypothetical protein SeryN2_31485 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909999|emb|CAM00111.1| hypothetical protein SACE_0770 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 183

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 14/188 (7%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
             +      +  + VL++  DLA G V+ P+ +     P E    G + +V       E 
Sbjct: 10  ALQPRPGPASDGVPVLVAARDLAPGHVLEPDDVARRTMPAELAPGGVLSEVD------EA 63

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
            G ++      G+P+   +L       L++       A  + ++    V  ++ P   VD
Sbjct: 64  TGRVLGTASRSGEPLTDVRLAGPAQTALTTG-DPRHAAVPIRLADPD-VADLLHPGRRVD 121

Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213
           +V   + S      +V+     VIA+       +R   G    + L    A A+ AA   
Sbjct: 122 IVTTATRSGN---SSVLAEQAPVIAVRPT---GDRHDQGRLIVVGLPEGLAPAVAAASLT 175

Query: 214 AKLSLVLR 221
             +++ LR
Sbjct: 176 QSVTVTLR 183


>gi|118469802|ref|YP_889718.1| hypothetical protein MSMEG_5481 [Mycobacterium smegmatis str. MC2
           155]
 gi|118171089|gb|ABK71985.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 216

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 68/182 (37%), Gaps = 12/182 (6%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
            ++     ++V ++  DL  G  +T   +   +     + DG   DV        + G  
Sbjct: 45  RSDPRGDHVDVAVAARDLVPGTALTAEDVRLESRSASTLPDGAQSDV------GAIVGAT 98

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
           +  P+ +G+ +   +++      L+  +    R   + +  + A+  +I+  D VDV+  
Sbjct: 99  LAGPMRRGEVLTDVRVIGSRLADLA--VGPDARIVPLSLGDA-ALLDVIRAGDVVDVLTT 155

Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
                +  T  ++ S+  V+ +        +      A + L    A  + AA     ++
Sbjct: 156 HDEEAKSATPRLIASDAVVVLVSQKPKGAGQD---RVALVALPARSAHEVAAASLTQAVT 212

Query: 218 LV 219
           L 
Sbjct: 213 LT 214


>gi|221633004|ref|YP_002522229.1| putative membrane fimbriae assembly protein [Thermomicrobium roseum
           DSM 5159]
 gi|221156453|gb|ACM05580.1| putative membrane fimbriae assembly protein [Thermomicrobium roseum
           DSM 5159]
          Length = 331

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 11/161 (6%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+    + ++   V A VA ++ +  +           T  P   +   ++  D+  G V
Sbjct: 1   MRRAGRLYLLAGFVLATVAVVLGIIALQRQREPVMPTQTTTPTTQVV--VAARDVRAGSV 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   +  V     +V  G            ++ G++V   ++ G  I L  LV      
Sbjct: 59  LTSEDVTVVETDPASVAPGTARQPD------QVVGLVVAGDLVAGQRILLANLVLP---S 109

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           +S+ +  GKRA  + +   +A+GG+++PND +D++    L 
Sbjct: 110 VSNTVQPGKRAVAIPVDRINALGGLLQPNDSIDLIYAGRLD 150



 Score = 35.5 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 69/253 (27%), Gaps = 46/253 (18%)

Query: 30  HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW-------------VAFPEENV 76
               +    T      +  L+  GDL  G  +    L               VA P + +
Sbjct: 69  TDPASVAPGTARQPDQVVGLVVAGDLVAGQRILLANLVLPSVSNTVQPGKRAVAIPVDRI 128

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136
                      +      G L  V IL  +P+      +  +       P          
Sbjct: 129 NALGGLLQPNDSIDLIYAGRLDLVRILPTEPL------ELADSAQGFSPPPESVKLPEPG 182

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-----------DHNIDS 185
           S SS       P +    V++    E +P   +++ N+R++ +                 
Sbjct: 183 SGSSQSRRYPYPGEPGSRVVISDTGEGQPITKIIVQNLRILQVIAGTSVVVRSPGQARSE 242

Query: 186 DERVLVGST---------------ATLELTPMQAKALV-AAQSVAKLSLVLRSIADLNPS 229
                   T                 +E+ P QA+ +        +  ++LR+  D  P 
Sbjct: 243 LTSTEPTRTPMPTANEATLPPVDLLIVEVDPEQAELISFLLDQNVRYQVILRARGDAQPV 302

Query: 230 SSEDSDVWDVQEE 242
            ++      + E 
Sbjct: 303 QTDGVTYDRLVER 315


>gi|223982946|ref|ZP_03633158.1| hypothetical protein HOLDEFILI_00437 [Holdemania filiformis DSM
           12042]
 gi|223965107|gb|EEF69407.1| hypothetical protein HOLDEFILI_00437 [Holdemania filiformis DSM
           12042]
          Length = 266

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 18/193 (9%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
           E   +     + + ++   L  G V+    ++ +  P   V +G   D         L G
Sbjct: 35  ETTVQAAIDPVLIPVAARYLKSGTVIQREDIQMIEVPRPVVLEGVEKDPEL------LLG 88

Query: 96  VLVRV--PILKGDPIRLEKLVDRGNGGLSSLLP--KGKRAATMDISISSAVGGMIKPNDH 151
             V     I +G       L+ +      S  P  + + A T+D  I ++    I P   
Sbjct: 89  QAVDTYNAIAEGSLFYEALLIPKEELHDVSAFPLLENEAAVTIDADIKTSYANSILPGHQ 148

Query: 152 VDVVMVRSLSERKPTVTVVL-----SNIRVIAIDHNID---SDERVLVGSTATLELTPMQ 203
           +D+      ++   +   VL     S  RVIA+  +       +     S   + L    
Sbjct: 149 IDLYFQGYATQADESEKRVLYGQLVSQARVIAVRDSTGKNIDAQSDKATSVIVVALAYED 208

Query: 204 AKALVAAQSVAKL 216
           A  +  A+    +
Sbjct: 209 ADLVQRAKFFGTV 221


>gi|72160773|ref|YP_288430.1| hypothetical protein Tfu_0369 [Thermobifida fusca YX]
 gi|71914505|gb|AAZ54407.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 214

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 19/189 (10%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                  + VL++  DL+  + +T       + P   V DG +           + G  +
Sbjct: 40  RPPAPPAVEVLVAAHDLSGLVPLTDADTVARSIPAAVVPDGALA------PGDPVAGRAL 93

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
           R P+  G+ +   +L D    G  + L     AA + ++       +++P   +DV+   
Sbjct: 94  RSPVRAGEILTEVRLADPPAAGYGADL----VAAPVRLADP-GAAALLRPGSRIDVLAAA 148

Query: 159 SLS-----ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213
                       T   ++ +  VI +    + D    +G+   L +T  +A+AL    + 
Sbjct: 149 GDPPVVDYPGPDTARRIVRDRPVITV--VAEDDAAHSLGTLIVLAVTDEEAQALAGHAAD 206

Query: 214 AKLSLVLRS 222
            +LS+ +R 
Sbjct: 207 -RLSIAIRG 214


>gi|169834865|ref|YP_001715910.1| hypothetical protein CLK_A0283 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408972|gb|ACA57382.1| hypothetical protein CLK_A0283 [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 242

 Score = 72.5 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 81/229 (35%), Gaps = 29/229 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   +  I+V+    L+A   A  +          + T N +    V+I+K  ++ G ++
Sbjct: 10  RNKIISTILVTSSVWLMAIAGAYYVS---EYANINLPTLNKSSKAPVIIAKRVISEGELI 66

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               +E    P  N+    I      N  ++L G +    +   + I+   +  + N   
Sbjct: 67  NEGDIEEKIMPINNIAKNTI------NVKKDLIGKITVNKLEPNEQIKKYDVTLKENQNN 120

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIRV 176
           +       R  ++ I + +     I  ND +DV++V   +    T       VV + ++V
Sbjct: 121 T------LRPYSIPIKLENLSDLSINSNDFIDVMVVYPKNNNAKTKQVKSTDVVAAKLKV 174

Query: 177 IAIDHN---------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
             I                E     S   ++ +  + +++  A+    L
Sbjct: 175 EYIADTSGNIVKHIGSGESEGQKTPSLLVVKASLEEIQSIEQARREGNL 223


>gi|116255772|ref|YP_771605.1| hypothetical protein pRL110571 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115260420|emb|CAK03524.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 312

 Score = 72.5 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 8/154 (5%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           ++ + +  L+ G++           TE V  E  A     L     +  G  +TP++L  
Sbjct: 5   LIAAVIVGLITGVLLYFW-------TESVKNEQTAYAFMRLQPDRKVTRGQAITPDMLAE 57

Query: 69  -VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127
            V  PE       +         + L        I  G  +  +   D   G L++++  
Sbjct: 58  PVMLPESFGALAKLAVPAASAYQEWLKDRTAASDIPAGSVLLFQYFDDTDGGRLTTMIAP 117

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           GKRA T+ ++ ++AVG  ++P  +VD++      
Sbjct: 118 GKRALTLPVNAAAAVGHFVEPGSYVDILGTVDEP 151



 Score = 61.7 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 18/173 (10%)

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           +IL  V  P E V          P     + G    V    G P    +        L +
Sbjct: 143 DILGTVDEPVEPVAPAAATQPGAPGQAPAVPGQPPAV---AGQPTAPAQPQSPVEQMLKN 199

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI 183
            L +   A       +       +  D      +   S  +      L N++V+A+    
Sbjct: 200 YLTQYPGA-----DENDVNAYRKQAQD----YKLGISSRTRVVTRTFLQNVKVLAVGAAT 250

Query: 184 DSDERVLVGST----ATLELTPMQAKALVAA--QSVAKLSLVLRSIADLNPSS 230
            ++  V   ++     T+E+TP +A+ L+ A  QS   L+LVLR+ AD     
Sbjct: 251 TAEGAVTKANSTYNNVTVEVTPSEAEMLIFAMGQSNGSLNLVLRNPADNTVED 303


>gi|184200331|ref|YP_001854538.1| hypothetical protein KRH_06850 [Kocuria rhizophila DC2201]
 gi|183580561|dbj|BAG29032.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 223

 Score = 72.1 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 64/192 (33%), Gaps = 18/192 (9%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A+   V+ +  ++  G  +    L    FPE     G            E  G   
Sbjct: 43  APPGARTAPVVTAAHEVPAGTSLGAGDLAVSQFPEALAPTGAYASPA------EAQGQTS 96

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
            V +  G P+    ++     G+ +  P G  AAT+ +S   AV   ++P D VDVV   
Sbjct: 97  AVALTPGQPVTSSTVLGP---GVLTGQPTGTTAATVRVSDP-AVLRHVRPGDAVDVVH-H 151

Query: 159 SLSERKPTVTVVLSNIRVIA-------IDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
           +   R          + V+           ++ +           L      A  L + +
Sbjct: 152 TDEARSARGRTAARAVTVLWAAGAPSGTGSSLLAAGTDDDAGLVVLAAPRETAAELASLE 211

Query: 212 SVAKLSLVLRSI 223
              ++SLVL S 
Sbjct: 212 GSGRVSLVLVSR 223


>gi|241667103|ref|YP_002985187.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862560|gb|ACS60225.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 318

 Score = 72.1 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 8/154 (5%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           ++ + +  L+ G++           TE V  E  A     L     +  G  +TP++L  
Sbjct: 5   LIAAVIVGLITGVLLYFW-------TESVKNEQVAYAFMRLQPDRKVTRGQAITPDMLAE 57

Query: 69  -VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127
            V  PE       +         + L        I  G  +  +   D   G L++++  
Sbjct: 58  PVMLPESFGALAKLAVPAASAYQEWLKDRTAASDIPAGSVLLFQYFDDTDGGRLTTMIAP 117

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           GKRA T+ ++ ++AVG  ++P  +VD++      
Sbjct: 118 GKRALTLPVNAAAAVGHFVEPGSYVDILGTVDEP 151



 Score = 59.4 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 62/176 (35%), Gaps = 18/176 (10%)

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV---RVPILKGDPIRLEKLVDRGNGG 120
           +IL  V  P E V          P     L G      + P   G P    +        
Sbjct: 143 DILGTVDEPVEPVAPAAATQPGAPGQPAALPGQPAVPGQAPPAAGQPQAPAQPQSPVEQM 202

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           L + L +   A       +       +  D      +   S  +      L N++V+A+ 
Sbjct: 203 LKNYLTQYPGA-----DENDVNAYRKQAQD----YKLGISSRTRVVTRTFLQNVKVLAVG 253

Query: 181 HNIDSDERVLVGST----ATLELTPMQAKALVAA--QSVAKLSLVLRSIADLNPSS 230
               ++  V   ++     T+E+TP +A+ L+ A  QS   L+LVLR+ AD     
Sbjct: 254 AATTAEGAVTKANSTYNNVTVEVTPSEAEMLIFAMGQSNGSLNLVLRNPADNIVED 309


>gi|317506822|ref|ZP_07964596.1| SAF domain-containing protein [Segniliparus rugosus ATCC BAA-974]
 gi|316254896|gb|EFV14192.1| SAF domain-containing protein [Segniliparus rugosus ATCC BAA-974]
          Length = 227

 Score = 72.1 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 74/184 (40%), Gaps = 17/184 (9%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++  DL  G  + P  L     P + V +G         A ++L G  V  P+  G+
Sbjct: 52  PVVVAAHDLKPGAALLPADLGIRRLPPDQVPEGAAT------AAEQLVGRTVAGPVRTGE 105

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL----SE 162
            +   +++      L++ +P+  R   + +    A+  M++P D VDV+ V        E
Sbjct: 106 TLTDARVIAPRLAQLATSVPE-ARIVPVRLPD-QALADMLRPGDVVDVITVPQRQSGLPE 163

Query: 163 RKPTVTVVLSNIRVIAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
              T    L    V+A        +     R   G  A + +    A+ + AA  V  ++
Sbjct: 164 DATTKQTGLRPPEVLARGAVVLLVSEPERSRSPEGRVALIAMADKPAQTVAAATLVQPVT 223

Query: 218 LVLR 221
           ++LR
Sbjct: 224 VILR 227


>gi|253576048|ref|ZP_04853381.1| flp pilus assembly protein CpaB [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844623|gb|EES72638.1| flp pilus assembly protein CpaB [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 265

 Score = 72.1 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 32/232 (13%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            RL+ + V+ + A VA +I            +  I         V ++  +L    +V  
Sbjct: 14  RRLLIVFVALILAGVAVVI------------QSSIVNKQVTTELVYVAADNLTPYSLV-E 60

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG--GL 121
             L      +  V D  I D+ +      +   +    I KG P+    L+       G 
Sbjct: 61  GKLVQRNVVKSEVPDDAIRDLKELEGESWVTTEV---GIPKGIPVSKSMLIPAKESKFGE 117

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVLSNIR 175
           S  L  G     +      + G MIKP   VD  +     +R+      P+   +L  + 
Sbjct: 118 SLELKDGAMFVGVKTDQVKSAGDMIKPGTIVDAYVYIKGQDRQPSELVTPSDDPLLKGLL 177

Query: 176 VIAID-------HNIDSDERVLVGSTATLELT-PMQAKALVAAQSVAKLSLV 219
           +               S  +  + + A +E T P  A AL+  Q   ++   
Sbjct: 178 IKDRQNQNGYEPQREGSGNQNPIPAIAVVETTNPDVAAALIKYQQEGEVYFT 229


>gi|317123663|ref|YP_004097775.1| Flp pilus assembly protein CpaB [Intrasporangium calvum DSM 43043]
 gi|315587751|gb|ADU47048.1| Flp pilus assembly protein CpaB [Intrasporangium calvum DSM 43043]
          Length = 267

 Score = 72.1 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 81/261 (31%), Gaps = 37/261 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    +  ++   +    A ++   +      +  +       +   V +++  +  G  
Sbjct: 1   MNRRLVAVLLAVLLAIAGALLVVNYV------RGADARAIADQQPAKVYLAEKLIPAGTT 54

Query: 61  VTP----NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           +       ++            G +DD++  N+      +L    I  G+ +   +   R
Sbjct: 55  LKDAQRTELIVETRVATVARPQGALDDINPENSA-----LLALSDIQPGEFVMASRFGTR 109

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-------------LSER 163
             G  +  +P G  A ++++S  + +G  + P   + +                      
Sbjct: 110 PVGEKAIEVPAGMLAMSVELSDPARIGKFVTPGSDIAIFATHGMKLIGEDDATKAFNELN 169

Query: 164 KPTVTVVLSNIRVIAIDH---------NIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
               TV+L  ++VIA+                +        T+ +TP Q+  L    +  
Sbjct: 170 LKGTTVLLDKVQVIAMGDTPLAAPKKAEAGKADEQTPSFLVTVAVTPEQSLRLAHGINEY 229

Query: 215 KLSLVLRSIADLNPSSSEDSD 235
            L   LR      P+     D
Sbjct: 230 TLYAGLRGSDVKIPADGHTDD 250


>gi|257057235|ref|YP_003135067.1| SAF domain-containing protein [Saccharomonospora viridis DSM 43017]
 gi|256587107|gb|ACU98240.1| SAF domain-containing protein [Saccharomonospora viridis DSM 43017]
          Length = 221

 Score = 72.1 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 65/183 (35%), Gaps = 20/183 (10%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
              + VL++   L +G  ++ + +     P E   DG +          +     +    
Sbjct: 55  EPRVPVLVAARTLPLGSTLSEDDVRVAEVPAELRPDGALVTPD------QAVDRRLVGAA 108

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
            +G+P+   + +D  NG      P G     + ++ +  +  +++    VDVV      E
Sbjct: 109 REGEPLTDLRFLDARNG------PPGSTTVPLRLTDA-GMTRLLRSGTRVDVVTPG---E 158

Query: 163 RKPTVTVVLSNIRVIAIDHNIDSDERVLVGS----TATLELTPMQAKALVAAQSVAKLSL 218
                 V+  N  V+++       +   +         + +   QA  + AA     +++
Sbjct: 159 GVRQARVLAENATVVSVVTPEPDRDDSPLARQNTPLVLVSVPDEQAPHVAAAALGNPVTV 218

Query: 219 VLR 221
            LR
Sbjct: 219 TLR 221


>gi|320161465|ref|YP_004174689.1| hypothetical protein ANT_20630 [Anaerolinea thermophila UNI-1]
 gi|319995318|dbj|BAJ64089.1| hypothetical protein ANT_20630 [Anaerolinea thermophila UNI-1]
          Length = 376

 Score = 71.7 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 7/168 (4%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88
           P              +  +++IS   ++ G+      +  + +P++++ +G         
Sbjct: 39  PTAPGETSAPPTPVEEMTSIVISVQPISRGLEFNETNVTTIPYPKKDLVEGAF-----IT 93

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDR--GNGGLSSLLPKGKRAATMDISISSAVGGMI 146
            +QE+ G   +  I    PI +  LVD    N   +  +P G+ A T+ +S  S+V   +
Sbjct: 94  DIQEVLGKRAKFDIEARTPITMTMLVDPTTKNSPAAFQIPPGQVAITIPVSKLSSVAYGL 153

Query: 147 KPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST 194
           +P DHV+V++   L +  P     L N   + +      +      S 
Sbjct: 154 EPGDHVNVIVSLLLVDIDPGFQSKLPNNTGVVVAPGPSGEGGPTTISA 201



 Score = 40.5 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 71/237 (29%), Gaps = 47/237 (19%)

Query: 51  SKGDLAVGMVVTPNIL---EWVAFPEE----------NVFDGFIDDVHQPNAMQELDGVL 97
           +K D+     +T  +L        P             +    +  V       +   V+
Sbjct: 103 AKFDIEARTPITMTMLVDPTTKNSPAAFQIPPGQVAITIPVSKLSSVAYGLEPGDHVNVI 162

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD---- 153
           V + ++  DP    KL    N G+              IS S +    +     +D    
Sbjct: 163 VSLLLVDIDPGFQSKL--PNNTGVVVAPGPSGEGGPTTISASVSKTDSLSGRTELDPTLG 220

Query: 154 --VVMVRSLSER-KPTVTVVLSNIRVIAIDH------------------------NIDSD 186
             + ++ S  +R +     ++ +  V+ +                               
Sbjct: 221 QPIYVIPSEPQRPRLVSQTLIQDAIVLRLGDFTSTSQQQAQTAAQQQPTPAPATGQAQQP 280

Query: 187 ERVLVGSTATLELTPMQAKALVAAQ-SVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
                  T TL +TP  A  L     +  +L+LV+RS  D    ++E   +  + ++
Sbjct: 281 AEAPKPDTVTLIVTPQDAVTLNYLMLAGGRLNLVMRSAGDSQRIATEPVTLQFILDQ 337


>gi|111022595|ref|YP_705567.1| hypothetical protein RHA1_ro05629 [Rhodococcus jostii RHA1]
 gi|110822125|gb|ABG97409.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 237

 Score = 71.7 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 76/183 (41%), Gaps = 14/183 (7%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
             +    V+++  DL  G+V+T   +E V      + DG +       A+ ++DG  +  
Sbjct: 63  PDSARSAVVVAARDLQPGVVLTDADVELVDLEAGTLPDGAVT------ALADVDGRTLAG 116

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---- 156
           P   G+ +   +++       ++ +    R   + ++   AV  +++  D VDV+     
Sbjct: 117 PTRAGEALTDVRVLGPRLAAAAAGM-DDARIVPVRLADP-AVTELLREGDRVDVLTVDPD 174

Query: 157 VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
             +  +R+   TV+ S   V+ +  + +  ++        L L   +A  + AA   + +
Sbjct: 175 TPANPDRRSGATVLASRAVVVLVTPSENGRDQRE--RVVMLALPASEATTVAAASLTSAI 232

Query: 217 SLV 219
           ++ 
Sbjct: 233 TVT 235


>gi|229587471|ref|YP_002860509.1| hypothetical protein CLJ_0202 [Clostridium botulinum Ba4 str. 657]
 gi|229260129|gb|ACQ51166.1| hypothetical protein CLJ_0202 [Clostridium botulinum Ba4 str. 657]
          Length = 242

 Score = 71.7 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 80/229 (34%), Gaps = 29/229 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   +  I+V+    L+A   A  +          + T N +    V+I+K  +  G ++
Sbjct: 10  RNKIISTILVTSSVWLMAIAGAYYVS---EYANINLPTLNKSSKAPVIIAKRVINEGELI 66

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               +E    P  N+    I      N  ++L G +    +   + I+   +  + N   
Sbjct: 67  NEGDIEEKIMPINNIAKNTI------NVKKDLIGKITVNKLEPNEQIKKYDVTLKENQNN 120

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIRV 176
           +       R  ++ I + +     I  ND +DV++V   +    T       VV + ++V
Sbjct: 121 T------LRPYSIPIKLENLSDLSINSNDFIDVMVVYPKNNNAKTKQVKSTDVVAAKLKV 174

Query: 177 IAIDHNI---------DSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
             +                E     S   ++ +  + +++  A+    L
Sbjct: 175 EYMADTSGNIVKHIGNGESEGQKTPSLLVVKASLEEIQSIEQARREGNL 223


>gi|311697131|gb|ADQ00003.1| pilus assembly, Flp-type CpaB [marine bacterium HP15]
          Length = 305

 Score = 71.7 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 84/252 (33%), Gaps = 28/252 (11%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVS------------PHHVQTEEVITENPAKFINV 48
           M    +  +    +  +   +    L+                 Q +    E        
Sbjct: 1   MNFRFVHAVPALVLSLIAISLAVYGLLLDTPGTARQMSSLASEGQVQRPTEEPELPSFTY 60

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +I+K  L  G V+    +           +   +            G  +   + KG PI
Sbjct: 61  VIAKQTLQAGEVLERTAV--------MAVESTEELEGLVELESLPFGEPLTARVDKGLPI 112

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168
               L  +    +  LL +G +A  ++++  S+VGG+I+P D VD+    S  +    V+
Sbjct: 113 SRSLLELQNP--VQQLLERGHKAVAVELTNLSSVGGLIRPGDSVDIFASFSEEDGASAVS 170

Query: 169 V-VLSNIRVIAIDHNIDSDERVLVGS-----TATLELTPMQAKALVAAQSVAKLSLVLRS 222
             + S I V+A+       + +         T  L +       L  A S ++L+     
Sbjct: 171 TRLFSAIPVLAVRGATSVTDDLDDDERRRNPTMVLAIPESDMSKLTLALSESRLTFAATK 230

Query: 223 IADLNPSSSEDS 234
             + +P S+  +
Sbjct: 231 PIEEDPVSTVTA 242


>gi|220913382|ref|YP_002488691.1| hypothetical protein Achl_2637 [Arthrobacter chlorophenolicus A6]
 gi|219860260|gb|ACL40602.1| conserved hypothetical protein [Arthrobacter chlorophenolicus A6]
          Length = 258

 Score = 71.7 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 89/265 (33%), Gaps = 43/265 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  RL+G + + V A+   ++ +  V        +       +   VL+ +  +  G  
Sbjct: 1   MK-ARLLGGIAALVIAIAGTVLLIAYVQG-----ADARAMAGTETAEVLVVQAPIPAGTP 54

Query: 61  VTP--NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
            +    ++   + P+  +    + +      ++E    +  V ++ G+ +   +LV+  +
Sbjct: 55  ASEISGMVAKKSLPKSALTGDTVTN------LKEEGTKVTAVSLVPGEQLLASRLVEAAS 108

Query: 119 --GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-------VRSLSERKPTVTV 169
             G     +P G +  ++ + I   VGG I   D V V +           + +     +
Sbjct: 109 FMGPSRVAVPGGMQEISLKLPIERVVGGKIAAGDTVGVFISLTETSGSGDNAAQSSGTQL 168

Query: 170 VLSNIRVIAI-------------------DHNIDSDERVLVGSTATLELTPMQAKALVAA 210
               + V A                         ++ +       T+    + A+ +V A
Sbjct: 169 TFHKVLVTATQYSNGSPSQASSGDAGASEGSLSSNENQSDGNYLITVASNSVDAERMVYA 228

Query: 211 QSVAKLSLVLRSIADLNPSSSEDSD 235
               K+ L  +   D    +S   D
Sbjct: 229 AEFGKVYLS-KEPKDATEGNSGVVD 252


>gi|37676252|ref|NP_936648.1| hypothetical protein VVA0592 [Vibrio vulnificus YJ016]
 gi|326424173|ref|NP_762070.2| Flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus CMCP6]
 gi|37200793|dbj|BAC96618.1| hypothetical protein [Vibrio vulnificus YJ016]
 gi|319999556|gb|AAO07060.2| Flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus CMCP6]
          Length = 272

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 99/267 (37%), Gaps = 24/267 (8%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVGM 59
           K  ++M   V  +F  +A    +  +     +TEEV+   P     + +L     +    
Sbjct: 11  KKDKIMNRAVIILFLSLAIFSTLFFLMGDMFETEEVVAAEPVIEPTVVLLELTQGVEKSG 70

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           +V+ ++ + +                  N +    G L   P+LKG  +  + + + G+ 
Sbjct: 71  IVSKSVYKEIEVKLSEAHSN---RHALKNELNIQPGALFNRPLLKGTILSNDVISNPGDR 127

Query: 120 -GLSSLLPKGKRAATMDISISSAVGG-MIKPND----------HVDVVMVRSLSERKPTV 167
             +   L K +     + S S+ +    ++P D            +++            
Sbjct: 128 DYMFLSLKKDEVPYYYEPSSSNIIENITLQPGDSVSFVSTTSSRSNLLETGYKDIGHLVS 187

Query: 168 TVVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
            +++S+ +VI +   + N+++ +     ++  + L   Q   L  AQ +  +S+V  S+A
Sbjct: 188 KIIISDAKVIQVIKSERNVNTTKASESQNSLVIALKVPQVLKLEMAQKIGDISIVPSSVA 247

Query: 225 DLNPSSSEDSDVWDVQEEGKEIQIIKA 251
                        D+ E+   ++ ++ 
Sbjct: 248 ----KRYLSIRSSDILEDQFGVRELRG 270


>gi|289675700|ref|ZP_06496590.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. syringae
           FF5]
          Length = 160

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 28/170 (16%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45
           M     + + V  +  AL+A  + + +  P       +    P                 
Sbjct: 1   MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAVVIPPSEPVTTETAIQTPPTPHVEE 60

Query: 46  ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               NV++   D+     +T + L       +    G         A+ ++ G      +
Sbjct: 61  ALRHNVVVLARDIPAYTAITADDLTIERL--KVAPLGSF------EAIDKIVGRSSWRTL 112

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
             G  +          G L+ ++   +RA  + +   +   G + P D+V
Sbjct: 113 TAGSWLTESNF--EAGGTLARMIRPHERALALQVDEVTGASGQLSPGDYV 160


>gi|300781680|ref|ZP_07091534.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
           33030]
 gi|300533387|gb|EFK54448.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
           33030]
          Length = 212

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 71/177 (40%), Gaps = 20/177 (11%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           VL    +++ G  ++ + +E    PE  V DG        + + +++G +V      G+ 
Sbjct: 43  VLAFTREVSPGEPLSADDVELQRMPEAIVPDGAF------DQVSDVEGQIVASTASAGEV 96

Query: 108 IRLEKLVDRGNGGLSSLLPKGKRA----ATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
           +   +L+      L S L  G RA      + ++    +  M+   D V VV +    + 
Sbjct: 97  VTPTRLLGPD---LVSALVPGDRADYTMVPVKLAEPDIIP-MLHHGDRVSVVTINHGEQE 152

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
               T+  + + V+A               +  L L   +A+A+ AA   + L++VL
Sbjct: 153 GAARTIATNGVVVLA------GGAEDSPAGSVLLLLLHDEAEAVAAASLSSPLAVVL 203


>gi|251795111|ref|YP_003009842.1| SAF domain protein [Paenibacillus sp. JDR-2]
 gi|247542737|gb|ACS99755.1| SAF domain protein [Paenibacillus sp. JDR-2]
          Length = 237

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 71/200 (35%), Gaps = 25/200 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   R  GI    + AL++G++   L     +Q          + + V+++K  +  G  
Sbjct: 1   MNRRRNAGI--GLLAALLSGVLVYGLFQLQKLQVTR------GETVEVIVAKQFVEAGRR 52

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T   + +   P E        +       ++  G+   +P+   +PI   K+       
Sbjct: 53  LTEADIAYKRIPREG------YEHEMLVDAKQAVGMETVIPLGTNEPILGWKIDKYH--- 103

Query: 121 LSSLLPKG-KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
              LLP G +    +      ++   I+  D V V +       +     +   + V ++
Sbjct: 104 ---LLPTGLESTFQIPRDYVRSISNGIRAGDKVTVYLSGENEPSRRIFDSL---VTVASV 157

Query: 180 DHNIDSD-ERVLVGSTATLE 198
             + + + + +   +  +L 
Sbjct: 158 KSSSNVEIDNMKDPNLLSLA 177


>gi|220913391|ref|YP_002488700.1| SAF domain protein [Arthrobacter chlorophenolicus A6]
 gi|219860269|gb|ACL40611.1| SAF domain protein [Arthrobacter chlorophenolicus A6]
          Length = 251

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 62/208 (29%), Gaps = 29/208 (13%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTP--NILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            +           VL+ +  +  G  +      L     P   +    +       ++  
Sbjct: 29  ADARAMASTNPKKVLVVEKPIPAGTPINDMTASLVIEDVPATAIAPTALT------SLDS 82

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGN--GGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
             G +  V ++ G+ +  E+LV            +P G +  T ++     VGG I+  D
Sbjct: 83  KAGTVAAVDLVPGEQLLAERLVAPEALKAEGGVQIPPGLQEVTFELEPKRVVGGRIQAGD 142

Query: 151 HVDVVMVRSLSER-----KPTVTVVLSNIRVIAIDHNIDSDERVLVGS------------ 193
           HV +    +           +  + L  + V AI     +                    
Sbjct: 143 HVGIGFSFAGGADKAKPADASTQLTLRKVTVTAIQRAPQAASAEAPADGSNPQDTTLPQG 202

Query: 194 --TATLELTPMQAKALVAAQSVAKLSLV 219
               T+ +  + A  ++ A +   L L 
Sbjct: 203 SLMVTVAVNDIDATKIIYASNNGDLWLT 230


>gi|302521637|ref|ZP_07273979.1| conserved hypothetical protein [Streptomyces sp. SPB78]
 gi|302430532|gb|EFL02348.1| conserved hypothetical protein [Streptomyces sp. SPB78]
          Length = 166

 Score = 71.3 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 16/160 (10%)

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143
                 +  L G +    + KG  ++ + +V+R        L  G++   + I  ++ V 
Sbjct: 3   DTAVTQLGALRGKIAVTTLHKGSLLQDDMIVNRP------ALRAGEQEIAIMIDAATGVA 56

Query: 144 GMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNI-------DSDERVLVGST 194
           G I P   V++          +K    +++   +V+ +           D+  R      
Sbjct: 57  GKITPGSSVNIYATFKGQNENQKDESRLIVERAQVLDVGKLTPFDQNNDDNRNRSTEAVP 116

Query: 195 ATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSED 233
            T  L    A+ +  A+S A  + L L    +  P+++  
Sbjct: 117 ITFGLGTTDAQRVAYAESFATHVRLALVGAGEQPPAAAGP 156


>gi|312126639|ref|YP_003991513.1| SAF domain-containing protein [Caldicellulosiruptor hydrothermalis
           108]
 gi|311776658|gb|ADQ06144.1| SAF domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 208

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 34/229 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MKL ++    +  + A         L++          T N  ++  ++++K D+  G  
Sbjct: 1   MKLKKIGLFFIFLILAAGLAFAEYYLLTN---------TANKPQYQLIIVAKQDIPAGAQ 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + L                        +++ G      I  G+PI  E L D     
Sbjct: 52  ITLDKLSVARVDVRTPVHAATTR-------KQILGRYALYDIKAGEPIIPEHLTDLSIDT 104

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV------LSNI 174
           L+     G +   + I         I   D +++  V         V V+        +I
Sbjct: 105 LA----NGMKLTAVRIDPVPY--DFINIGDEIELGCVIQDKTLSWRVRVIQVYDANFRDI 158

Query: 175 RVIAIDHNIDSDERVLVGSTAT--LELTPMQA--KALVAAQSVAKLSLV 219
           R  ++   +         +     L +    A  K L +A+    L ++
Sbjct: 159 R--SVKEQLQQTNAQQAPALMIGYLAVAGDDATIKTLKSAEKQGTLFVI 205


>gi|190149866|ref|YP_001968391.1| flp operon protein C [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|189914997|gb|ACE61249.1| flp operon protein C [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
          Length = 272

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 61/204 (29%), Gaps = 18/204 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAM--------RLVSPHHVQTEEVITENPAKFINVLISK 52
           M    L+ I +  +     G+  +          V       E   +    K I  +   
Sbjct: 1   MNYRVLLIISLVIIVLGFGGLFMLPTNEGTTTENVGTTTTLEESSNSPVTEKVITTVTLN 60

Query: 53  GDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIR 109
            DL  G ++ P                   D+      +    L G LV   +  G  + 
Sbjct: 61  RDLEKGTLIQPEDYTLSELTVAETSPLVDSDLKALLDAEPNHSLQGFLVTENLKAGSLLT 120

Query: 110 LEKLVDRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL----SE 162
              ++   +    L SL P  + A  + +      +   ++  D V V  V+        
Sbjct: 121 PNLIITPEDPRFILLSLDPSQEVAYRIYVQDAEQYILDSVRGGDLVSVYSVQQDLAHPER 180

Query: 163 RKPTVTVVLSNIRVIAIDHNIDSD 186
            + ++  +  N++V+ +      +
Sbjct: 181 EQNSLVKIADNLKVLQVKSFTQEE 204


>gi|119963620|ref|YP_948619.1| Flp pilus assembly protein [Arthrobacter aurescens TC1]
 gi|119950479|gb|ABM09390.1| putative Flp pilus assembly protein CpaB family [Arthrobacter
           aurescens TC1]
          Length = 248

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 94/237 (39%), Gaps = 31/237 (13%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
            TRL+G +V+ V A+V  ++ +  V     Q  +   +   + ++VL+ +  +  G  + 
Sbjct: 2   KTRLLGGIVAVVLAIVGTLLLVTYV-----QAADARAQKDLQPVDVLVIQSQVPEGADLQ 56

Query: 63  --PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-- 118
              + ++  + P  +V +G +       ++  ++G +    ++ G+ +   +LVD  +  
Sbjct: 57  QIKSAVKLASLPAASVPNGALK------SLSGMEGKVAGAELMPGEALLGNRLVDPNSLA 110

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIR 175
              S  +P G +  ++ +     VGG +   D V VV++   + +     +  +V   + 
Sbjct: 111 APGSVPVPDGLQEVSVQLDAQRVVGGRLAAGDTVGVVVLVGENGQSDTDASAQLVFHKVL 170

Query: 176 VIAIDHNIDSDERVLVGST-------------ATLELTPMQAKALVAAQSVAKLSLV 219
           V ++      +      S+              TL  + + A  +V       + L 
Sbjct: 171 VTSVQRATARNSNTAQASSEQANTQLPEGSFIVTLARSDVDATKIVYGAKYGDIWLT 227


>gi|32477848|ref|NP_870842.1| hypothetical protein RB13066 [Rhodopirellula baltica SH 1]
 gi|32448405|emb|CAD77920.1| hypothetical protein-transmembrane prediction [Rhodopirellula
           baltica SH 1]
          Length = 590

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 89/283 (31%), Gaps = 38/283 (13%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP---NILEW 68
           +   AL  G     LV      T+E     P   + V I    L     + P        
Sbjct: 303 AVTSALELGATVNVLVRSGRPDTDEPSNNVPEGMVAVPIPGQTLLAYQTIRPTSFEDPAT 362

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPK 127
                  V        +    + +L G + R  +    PI+   L+      GLS   P 
Sbjct: 363 AYVRTIQVPAETASQSNWITDLSKLVGRIPRHDLPATVPIQEGDLMPVGTMAGLSGATPP 422

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----------------RKPTVTVV 170
           G+    +D       G   +   H+D+V  R+  E                 ++ +V  +
Sbjct: 423 GRVLFFLDTEGLIG-GDAFEFGQHLDLVASRTADEPRGGSRGGFANVTLTDAQRTSVEPI 481

Query: 171 LSNIRVIAIDHNIDS-------DERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRS 222
             ++ V+    +  +       D +    +   + + P Q   L  A +V   L   +RS
Sbjct: 482 ADDVIVMMPTRSPGNPTAGKSKDTKDSPSAKLIVAVRPEQVAHLEYAVAVGSNLRATVRS 541

Query: 223 --------IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
                   +++  P+    +  +D   + K+  I   G   ++
Sbjct: 542 GRVDSTDLVSERQPAGRVAAMRFDPLADTKQTDIYVGGSSQSQ 584


>gi|312621778|ref|YP_004023391.1| SAF domain-containing protein [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202245|gb|ADQ45572.1| SAF domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 209

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 71/230 (30%), Gaps = 35/230 (15%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+L ++    V  V A         L++            N  ++  ++++K D+  G  
Sbjct: 1   MRLKKIGLFFVFLVLATGLAFGEYYLLTNI---------ANKPQYQLIIVAKQDIPAGAQ 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + L                 +H      ++ G      I  G+PI  E L +     
Sbjct: 52  ITLDKLSVARV-------DIQTPIHAAKTRNQILGKYALYDIKAGEPIIPEHLTNLSVNT 104

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV------LSNI 174
           L+     G +  T+ I         +   D +++  V         V V+        +I
Sbjct: 105 LA----NGMKLTTVRIDPVPY--DFLNIGDEIELGCVIQNKTLSWRVRVIQVYDPNFRDI 158

Query: 175 RVIAIDHNIDSDERVLVGSTAT---LELTPMQA--KALVAAQSVAKLSLV 219
           R  ++   +                L +    +  K L  A+    L ++
Sbjct: 159 R--SVKEQLQQTNAAQQAPALMIGYLAVAGDDSTIKTLKLAERQGILFVI 206


>gi|227504186|ref|ZP_03934235.1| SAF domain protein [Corynebacterium striatum ATCC 6940]
 gi|227199230|gb|EEI79278.1| SAF domain protein [Corynebacterium striatum ATCC 6940]
          Length = 226

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 33/231 (14%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           + + L+  V++ V  + AG+ A+                        ++   D+  G  +
Sbjct: 16  RRSLLVRRVLAAVLIIGAGLSALHARRELPQA---------------VVFARDVPAGSTL 60

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120
               L     P   + D  +D       +++L+G +V      G+ +   +L+       
Sbjct: 61  QAEDLTLAPVPSHILPDSAVDTD-----LEKLEGRVVVAAAASGELVTDARLLSPELVDN 115

Query: 121 ---LSSLLPKGKRAATMDIS-ISSAVGGMIKPNDHVDVVMVRSLSE----RKPTVTVVLS 172
               S+L   G+ +  + +      +   +   D V+V+   S S+      P  +V+ +
Sbjct: 116 LVNNSTLNTSGEESHMIPLKLAEPDILPHLHHGDTVNVIAGNSNSDLIGTTSPAGSVIAA 175

Query: 173 NIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
             RV+A   + D ++     ST  L L   QA A+ +A     L++V+   
Sbjct: 176 GGRVVATTSSRDGED----ASTLLLALPASQADAVASASLSQPLTVVIVGQ 222


>gi|310830431|ref|YP_003965532.1| hypothetical protein PPSC2_p0070 [Paenibacillus polymyxa SC2]
 gi|309249898|gb|ADO59464.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 291

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 76/220 (34%), Gaps = 27/220 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+    + + V  +  +    +          Q      ++    + VL++K D++ G  
Sbjct: 1   MRGKNKLLLTVLLITFVATSGMFYY-------QNVYAPKQDEKNKVFVLVAKKDISEGAA 53

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
            TP+ +  +   +  V   FI +        E+ G      +   + +   +        
Sbjct: 54  FTPDNIGAIKMDKNMVLPNFITN------FDEMKGKTASTDLFSNEIVTKRQ-------- 99

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
            ++ +  G +   + I  ++ +   IK  D V V +  ++  +      +     V+ ++
Sbjct: 100 -TTGVSDGSKKFKLGIEAAN-MPTSIKNGDAVRVFVQTTIGNKIFE---IFDKKEVVNVN 154

Query: 181 -HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                S +   +  +  L ++  +A     AQ    + +V
Sbjct: 155 FKKSASGQESQLVESVDLLVSDKEAVTYFDAQKAGSIFIV 194


>gi|15602718|ref|NP_245790.1| hypothetical protein PM0853 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721162|gb|AAK02937.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 270

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 84/261 (32%), Gaps = 28/261 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAM----RLVSPHHVQTEEVITENPAKFINVLISKGDLA 56
           M    L  I +  +   V GI+ M       +           + P K I +   K D+ 
Sbjct: 1   MNYRMLFIISLLTLVVGVGGILFMPTGDSSSAGEGGVALSETEKKPEKLITLAELKRDIK 60

Query: 57  VGMVVTPNILEWVAFPEEN---VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
            G ++                 + +  + DV   +  + L G LV   +  G  +    +
Sbjct: 61  AGSLLQVEDYSLTEIKVTEDNPLTNNDLTDVLALSKFKTLQGHLVAENLKSGSLLSPSTV 120

Query: 114 VDRGNGGLSSLLPKGKRAATMDI---SISSAVGGMIKPNDHVDVVM------VRSLSERK 164
           +   +          K+     +        +   ++  D+V V         R  S  K
Sbjct: 121 ISPNDSRFLLSSLDTKQEIAFRVYLKPTERYILDTLRSGDYVSVYNQKIAYRAREESIDK 180

Query: 165 PTVTVVLSNIRVIAI----------DHNIDSDERVLVG-STATLELTPMQAKALVAAQSV 213
            ++  +++ + V+ +          D     DE         +L++   QAK     +  
Sbjct: 181 NSLIKIINKLLVLQVNVFQVLDENNDSVKKQDELAGEYIGYISLKVNAKQAKMFYELEKD 240

Query: 214 AKLSLVLRSIADLNPSSSEDS 234
           +KL +VL S+ +   S++   
Sbjct: 241 SKL-IVLPSVDEAESSNNRGV 260


>gi|327538081|gb|EGF24771.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
           WH47]
          Length = 590

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 88/283 (31%), Gaps = 38/283 (13%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP---NILEW 68
           +   AL  G     LV      T+E     P   + V I    L     + P        
Sbjct: 303 AVTSALELGATVNVLVRSGRPDTDEPSNNVPEGMVAVPIPGQTLLAYQTIRPTSFEDPAT 362

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPK 127
                  V        +    + +L G + R  +    PI+   L+      GLS   P 
Sbjct: 363 AYVRTIQVPAETASQSNWITDLSKLVGRIPRHDLPATVPIQEGDLMPVGTMAGLSGATPP 422

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----------------RKPTVTVV 170
           G+    +D       G   +   H+D+V  R+  E                 ++ +V  +
Sbjct: 423 GRVLFFLDTEGLIG-GDAFEFGQHLDLVASRTADEPRGGSRGGFANVTLTDAQRTSVEPI 481

Query: 171 LSNIRVIAIDHNIDS-------DERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRS 222
             ++ V+    +  +       D +        + + P Q   L  A +V   L   +RS
Sbjct: 482 ADDVIVMMPTRSPGNPTARKSKDSKDSPAPKLIVAVRPEQVAHLEYAVAVGSNLRATVRS 541

Query: 223 --------IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257
                   +++  P+    +  +D   + K+  I   G   ++
Sbjct: 542 GRVDSTELVSERQPAGRVTAMRFDPLADTKQTDIYVGGSSQSQ 584


>gi|149188864|ref|ZP_01867154.1| hypothetical protein VSAK1_05925 [Vibrio shilonii AK1]
 gi|148837284|gb|EDL54231.1| hypothetical protein VSAK1_05925 [Vibrio shilonii AK1]
          Length = 148

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 21/139 (15%)

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPTVTVVLSNIRV 176
                +++S  + +   I+P   +DV+ V S ++            R    ++ L +++V
Sbjct: 1   MTLYPLEVSDKNLINDYIRPGSFIDVLTVSSPNDNLAGNVDKPKRFRGVKASMFLKHVKV 60

Query: 177 IAIDH--------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           + +             S  +    +T  +E+ P     L  AQ    + +  RS     P
Sbjct: 61  LNVGDDKGDNSSVTARSPTKENGLTTVVIEVKPDDLAKLALAQRTMHIEI-YRSQTYKQP 119

Query: 229 SSSEDSDVWDVQEEGKEIQ 247
             +E  ++ D     +E++
Sbjct: 120 EYAEVRNIIDNYTGIEELR 138


>gi|320158382|ref|YP_004190760.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O]
 gi|319933694|gb|ADV88557.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O]
          Length = 257

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 92/266 (34%), Gaps = 26/266 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++  +   +F+ +  ++     +   V  E V+       + +L     +    +
Sbjct: 1   MNRAVIILFLSLAIFSTLFFLMGDMFETEEVVAEEPVV----EPTVVLLELTQGIEKSGI 56

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119
           V+ ++ + V               ++ N      G L   P+LKG  +  + + + G+  
Sbjct: 57  VSKSVYKEVEVKLSEAHSNRYTLKNELNIQP---GALFNRPLLKGTILSNDVISNPGDRD 113

Query: 120 GLSSLLPKGKRAATMDISISSAVGG-MIKPND----------HVDVVMVRSLSERKPTVT 168
            +   L K +     +   SS +    ++P D            +++             
Sbjct: 114 YMFLSLKKDEVPYYYEPERSSIIENITLQPGDSVSFVSTTSSKSNLLETGYQDIGDLVSK 173

Query: 169 VVLSNIRVIAIDHNIDSD---ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           +++S+ +VI +  +   D         ++  + L   Q   L  AQ +  +S+V  S+A 
Sbjct: 174 IIISDAKVIQVIKSEKDDKESGAEKSPNSLVIALKVPQVLKLEMAQKIGDISIVPSSVA- 232

Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKA 251
                       D+ E+   ++ ++ 
Sbjct: 233 ---KRYLSIRSSDILEDQFGVRELRG 255


>gi|46143342|ref|ZP_00204448.1| hypothetical protein Aple02001966 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208038|ref|YP_001053263.1| flp operon protein C [Actinobacillus pleuropneumoniae L20]
 gi|126096830|gb|ABN73658.1| flp operon protein C [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 272

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 61/204 (29%), Gaps = 18/204 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAM--------RLVSPHHVQTEEVITENPAKFINVLISK 52
           M    L+ I +  +     G+  +          V       E   +    K I  +   
Sbjct: 1   MNYRVLLIISLVIIVLGFGGLFMLPTNEGTTTENVGTTTTSEESSNSPVTEKVITTVTLN 60

Query: 53  GDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIR 109
            DL  G ++ P                   D+      +    L G LV   +  G  + 
Sbjct: 61  RDLEKGTLIQPEDYTLSELTVAETSPLVDSDLKALLDAEPNHSLQGFLVTENLKMGSLLT 120

Query: 110 LEKLVDRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL----SE 162
              ++   +    L SL P  + A  + +      +   ++  D V V  V+        
Sbjct: 121 PNLIITPEDPRFILLSLEPSQEVAYRIYVQDAEQYILDSVRGGDLVSVYSVQQDLAHPER 180

Query: 163 RKPTVTVVLSNIRVIAIDHNIDSD 186
            + ++  +  N++V+ +      +
Sbjct: 181 EQNSLVKIADNLKVLQVKSFTQEE 204


>gi|269836549|ref|YP_003318777.1| Flp pilus assembly protein CpaB [Sphaerobacter thermophilus DSM
           20745]
 gi|269785812|gb|ACZ37955.1| Flp pilus assembly protein CpaB [Sphaerobacter thermophilus DSM
           20745]
          Length = 326

 Score = 69.8 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 9/119 (7%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                 NV+++  D+    V++ + +E        V  G         A  ++ G+ V  
Sbjct: 39  AEPTKANVVVAARDIPANTVLSEDDIEIAEVDATGVAPGSAT------APAQVVGMAVSG 92

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
            ++KG  I    L+     GL+  L +G RA  + +   +A+GGMI+P+D +D++    
Sbjct: 93  NLVKGQQILSANLLAP---GLTFDLAEGHRAIALPVDRINALGGMIRPDDRIDIIYSIR 148


>gi|134298671|ref|YP_001112167.1| hypothetical protein Dred_0804 [Desulfotomaculum reducens MI-1]
 gi|134051371|gb|ABO49342.1| hypothetical protein Dred_0804 [Desulfotomaculum reducens MI-1]
          Length = 199

 Score = 69.8 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 76/216 (35%), Gaps = 34/216 (15%)

Query: 1   MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           MK+ +  +  V+  VFA+V  I      +               K + V  +  DL    
Sbjct: 1   MKIKKHNIFYVLFVVFAVVTAIGVFHGYNT------------VTKKVPVAKAGADL---- 44

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            V   +             G +          E+ G+  +  I  G  +R    +   + 
Sbjct: 45  -VQDEMASSKNLVIGQTPIGALQK-DTVRHPDEIKGMYAKGFIPAGTVLRKSMFISFKDA 102

Query: 120 GLSSLLP--KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
           G+++ L    GK A ++   I ++VGG +K    V++      SER+     +     V+
Sbjct: 103 GVAARLANYPGKIAVSLGADIYTSVGGELKREYKVNIKSGYKGSERE-----IAKEAIVL 157

Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213
           +        E         L +TP ++  L +A+S 
Sbjct: 158 S--------EPTAKKEAIVLAMTPEESTLLTSARSN 185


>gi|253577450|ref|ZP_04854765.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843150|gb|EES71183.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 377

 Score = 69.8 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 93/298 (31%), Gaps = 45/298 (15%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMR-----------LVSPHHVQTEEVITENPAKFINVLI 50
           K   ++ I  S V  LV+ I  ++           + + +  Q E++ T        +L+
Sbjct: 9   KPIVIIAIGFSFVLLLVSTIFVLQHQAQQKRLQQQMRAHYEQQIEQLKTNEQQGKTRILV 68

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +   +  G  +    ++ V      V      D         + G + ++ +    P+  
Sbjct: 69  AARPIPAGKTLGNGDIQAVEVVHALVPSDSFKDPQM------VVGKIAKIDLQSNTPLIA 122

Query: 111 EKLVDRG--------NGGLSSLLPKGK---RAATMDISISSAVGGMI--------KPNDH 151
             L + G               LP      +   + I+  +    ++             
Sbjct: 123 SMLYEEGAIPRDLRMQEFNVIQLPTHLQKDQVVDVRINFPTGEDYIVLSKKKVRDLSGMI 182

Query: 152 VDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDERVL----VGSTATLELTPMQAK 205
           V + M            +   L   ++ A+ +     +         +   L+L      
Sbjct: 183 VRLEMNEPEILMASSAIIDAYLQGAKLYALPYIEPGLQEAAIANYPANPKVLDLMDRDPN 242

Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI-QIIKAGVIVNKDGEGI 262
            L  A++  +L+  LRS  D N  +  D+D   V      + Q ++   IV + G  +
Sbjct: 243 VLEKAKT--ELARQLRSRLDNNLKAMSDADKLRVVSGSVTVQQQLQNDRIVTQQGNAM 298


>gi|119714038|ref|YP_919180.1| SAF domain-containing protein [Nocardioides sp. JS614]
 gi|119525947|gb|ABL79317.1| SAF domain [Nocardioides sp. JS614]
          Length = 259

 Score = 69.0 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 20/243 (8%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K  R  G ++  V  ++A +IA   +  +    EE           VL+    +  G  +
Sbjct: 36  KAPRKYGQMLMSVLVVIAAVIAGGWLYVNKGGVEE-----------VLVVAQPIPAGHPI 84

Query: 62  TPNILEWVAFPE-ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           T + +     P   +     ID     + +  + G    V +L G  +  + L       
Sbjct: 85  TEDDVRTSKDPLLVSRSVSGIDGAILVSDVDSVFGQRTTVALLPGQVLTQDSLTSD---- 140

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
              L  +GKR   +++  +  V   + P   VD + V    +       +   + + A  
Sbjct: 141 --LLPQEGKRLIAVNL-PAGRVPDTLAPGSVVDAIAVPQEGQSGDP-KALDDPVVISAGA 196

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240
               S +        T+ +    AK + A  +V +L+L+   I + +P+ S   D     
Sbjct: 197 TVYSSKQSQDGTVVVTILIAETDAKTVAAYGAVGQLTLLQAPITEGDPADSAPQDDSATG 256

Query: 241 EEG 243
            +G
Sbjct: 257 GQG 259


>gi|269125159|ref|YP_003298529.1| SAF domain-containing protein [Thermomonospora curvata DSM 43183]
 gi|268310117|gb|ACY96491.1| SAF domain protein [Thermomonospora curvata DSM 43183]
          Length = 378

 Score = 69.0 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 12/129 (9%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
             +       + VL +  DL  G  +    +  V  P   V DG + D         + G
Sbjct: 40  AAVHPPAPAGVRVLTAARDLPGGTELREQDIRPVMMPSAAVPDGALRD--------RVVG 91

Query: 96  VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
            ++  P+ +G+ +   +LV     GL      G  AA + ++  +A   +++P D +DV 
Sbjct: 92  RVLAGPMRRGEIVTDTRLV---GDGLLKGYGPGTVAAPIRVAD-TAALRLLRPGDRIDVF 147

Query: 156 MVRSLSERK 164
                    
Sbjct: 148 ATAFSGGSG 156


>gi|296140955|ref|YP_003648198.1| SAF domain protein [Tsukamurella paurometabola DSM 20162]
 gi|296029089|gb|ADG79859.1| SAF domain protein [Tsukamurella paurometabola DSM 20162]
          Length = 218

 Score = 69.0 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 69/200 (34%), Gaps = 11/200 (5%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
           A   V         V +E       VL +  +L  G  +    L     P E      + 
Sbjct: 29  AAAGVLTVLALVVAVTSEPSGPQTEVLTAARELGPGGRLADADLRLTTVPAELAPPDALT 88

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV 142
                 +  +  G  V  P+  G+ +   +++     G    +  G R   + +  ++ +
Sbjct: 89  ------STGQAVGRSVTGPVGAGEILTDRRVLTDRTAG---QIRPGSRLVPVALQDAATM 139

Query: 143 GGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTP 201
             +++P D VDVV  R      +      L   R   +     +        TA L +T 
Sbjct: 140 -DLLRPGDVVDVVAQRKARAGEREDDGTPLVLARSATVAVAAAAQGPRQQARTAMLAMTE 198

Query: 202 MQAKALVAAQSVAKLSLVLR 221
            +A A+ AA   + LS+V R
Sbjct: 199 TEAHAVAAAALSSPLSVVFR 218


>gi|331694666|ref|YP_004330905.1| SAF domain-containing protein [Pseudonocardia dioxanivorans CB1190]
 gi|326949355|gb|AEA23052.1| SAF domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score = 69.0 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 69/192 (35%), Gaps = 12/192 (6%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
                 +       + V+++  DL  G  +    +   ++P+  V  G         A  
Sbjct: 41  TAVVLALRPAADPGVPVVVAVHDLPAGTTLAAADVAVRSWPQGLVPGGV------AAAPS 94

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS-ISSAVGGMIKPND 150
           ++ G ++  P   G+P+   +LV      +++       A ++ +      V G++ P  
Sbjct: 95  DVTGRVLAGPARAGEPLTDLRLVGPALAVVATGRAD---AVSVPVRLADPGVAGLLTPGS 151

Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210
            VDVV   + ++    +    +   V+              G    + L P QA  L AA
Sbjct: 152 LVDVVTPGATADEAVVLASAAAVTAVL--PAENGPVAGAAKGRLVLVALPPAQATRLAAA 209

Query: 211 QSVAKLSLVLRS 222
               ++++ LR 
Sbjct: 210 SLTQQVAITLRP 221


>gi|312883307|ref|ZP_07743033.1| hypothetical protein VIBC2010_04704 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368923|gb|EFP96449.1| hypothetical protein VIBC2010_04704 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 250

 Score = 69.0 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 91/263 (34%), Gaps = 27/263 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M         +S +   +     +   S                 +++     ++  G +
Sbjct: 1   MNRN------ISILLVTLFLFTTIYFFSQDSKDKPLQEEIVNEDVLSIYCINKNVKKGEL 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGNG 119
           V  N +  +   E  + +    D +         G + +  + +G+ +   K LV   N 
Sbjct: 55  VDRNFISIIDVKESELSNLEYIDSNNEIPS----GSVFKTDLKEGEFLSQSKYLVPGDND 110

Query: 120 GLSSLLPKGKRAATMD-ISISSAVGGMIKPNDHV----------DVVMVRSLSERKPTVT 168
            +S LL   +     + +S  +A    +   D +          +V++         T  
Sbjct: 111 YISFLLDSDELPYLYENVSSFTAKSLNLNSGDRISFISTMSSESNVLISGYDDINNVTSK 170

Query: 169 VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228
           +V++N RV+ +      +      ++  + L P +   L  ++ ++++S++  S  + N 
Sbjct: 171 IVINNARVLQVLREKKEETDEEN-TSIVVALKPKEILKLELSRKISEVSIIPSSFKNKNL 229

Query: 229 SSSEDSDVWDVQEEGKEIQIIKA 251
                 ++ D+ E    ++ ++ 
Sbjct: 230 ----KVEINDILESKIRVRELRG 248


>gi|116671477|ref|YP_832410.1| hypothetical protein Arth_2931 [Arthrobacter sp. FB24]
 gi|116611586|gb|ABK04310.1| hypothetical protein Arth_2931 [Arthrobacter sp. FB24]
          Length = 259

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 70/192 (36%), Gaps = 17/192 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +RL+  VV+ + A+V  ++ +        +            + VL+    +  G  
Sbjct: 1   MK-SRLLAGVVAVLLAIVGAVLVVTYAQGADQRAV-----KDLDPVGVLVVTKAIPAGAT 54

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-- 118
           V        +   E V    +      + + E  G +    ++ G+ +  EKLV   +  
Sbjct: 55  V---DTVKASVALEQVPGTAVAKSA-LDTLDESAGKVAAANLVPGEQLLAEKLVAPEDLQ 110

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSN 173
              S  +P G +  +  +     VGG ++P DHV + +            K T  + +  
Sbjct: 111 TSGSMKVPAGLQEVSFQLEPQRVVGGRLQPGDHVGIFITMRSGGIEPKPEKETTQLSIHK 170

Query: 174 IRVIAIDHNIDS 185
           + V A+    + 
Sbjct: 171 VLVTAVQRAPEG 182


>gi|325964122|ref|YP_004242028.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470209|gb|ADX73894.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 247

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 74/237 (31%), Gaps = 35/237 (14%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT--PN 64
           M    +   A+V  ++ +        +          + ++VL+ K  +  G  V     
Sbjct: 1   MAGTAAVALAIVGALLIIFYAQGADQRAI-----ATTQPVDVLVVKTAIPAGTPVNDMAA 55

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN--GGLS 122
            L     P   V D  +      +++    G +  V ++ G+ +  E+LV   +     +
Sbjct: 56  SLALERMPAAGVSDTAL------SSLDNKAGTVSAVDLVAGEQLLAERLVAPADVKAQGA 109

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----VRSLSERKPTVTVVLSNIRVI 177
             +P G +  + ++     VGG I   DHV + +              T  + L  + V 
Sbjct: 110 VEVPAGLQEVSFEVEPKRVVGGRINVGDHVGIALNFENGAYKAKADDATTQLTLRKVIVT 169

Query: 178 AIDHNIDSDERVLVGS---------------TATLELTPMQAKALVAAQSVAKLSLV 219
           A+                               T+ +T + A  ++       L L 
Sbjct: 170 AVQRAPQPASTEKPAEGEANSQDTTLPQGSLMITVAVTDVDAAKIIFTSINGTLWLT 226


>gi|226307879|ref|YP_002767839.1| hypothetical protein RER_43920 [Rhodococcus erythropolis PR4]
 gi|226186996|dbj|BAH35100.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 248

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 22/194 (11%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                + V++S  DL  G V+  + +E      + + +G + D         + G  V  
Sbjct: 64  PATDTVAVVVSSRDLTPGQVIADSDVEIREIDSKQLPEGVVSDTDL------VVGRTVAG 117

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
           PI  G+ +   +++     GLS       R   + ++ + AV  M++  D VDV+ V   
Sbjct: 118 PIRSGETVTDVRVLSPRLAGLSVG-TDDARIVPVRLADA-AVADMLRSGDVVDVLTVGPD 175

Query: 161 SERKPTVTV-------------VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL 207
           + R  T                +L+   V+A+        R        L L    A  +
Sbjct: 176 TSRTDTSRPDTPNESIADQAPQILAAGAVVAL-VTTSESTRNQQEQVILLALPTPAANVV 234

Query: 208 VAAQSVAKLSLVLR 221
            AA     +++  R
Sbjct: 235 AAASLSNAITVTFR 248


>gi|238782882|ref|ZP_04626911.1| tight adherance operon protein [Yersinia bercovieri ATCC 43970]
 gi|238716305|gb|EEQ08288.1| tight adherance operon protein [Yersinia bercovieri ATCC 43970]
          Length = 279

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 96/284 (33%), Gaps = 38/284 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++   +  +    AG++  R    + +       +     I +  S  DL+ G +
Sbjct: 1   MNRKLILLFSLIIIAIGAAGVLGNREDGSNTLTNLVEPKKEKIATIMLAQSTRDLSSGTI 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T +           V +         +  + +   L++  IL G  I  E LV   +  
Sbjct: 61  LTKDDYALKTV---MVPESSQLIKSDLSNPENIKSHLLKTNILSGSYITNEMLVSPESSE 117

Query: 121 LSSL-LPKGKRAATMDIS-ISSAVGGMIKPNDHVDV------------------VMVRSL 160
              L L KG+     DI      +  ++   D + +                  +  + +
Sbjct: 118 FDRLSLKKGEVIYKFDIEQQEQHLLDVLNLGDTLSLQLRTLETDLRKGVENGIAINTQEM 177

Query: 161 SERKPTVTV---VLSNIRVIAI----DHNIDSDERVLVGSTATL----EL--TPMQAKAL 207
           ++RK    +   V+ N+RVI I     + +  + +    +  +L    E+     +   +
Sbjct: 178 NDRKKQNYLLTEVIPNMRVIRIKKYSANELSEENKKNQKTKISLVGYIEVIINTEELNII 237

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
             A+    + L+     +L         + D+  + + I+ ++ 
Sbjct: 238 HLAEKSGDIFLI--PGTELRDEHHTSKSLHDIFPKLRTIRELRG 279


>gi|15895245|ref|NP_348594.1| hypothetical protein CA_C1974 [Clostridium acetobutylicum ATCC 824]
 gi|15024955|gb|AAK79934.1|AE007702_1 Hypothetical secreted protein [Clostridium acetobutylicum ATCC 824]
 gi|325509391|gb|ADZ21027.1| Hypothetical secreted protein [Clostridium acetobutylicum EA 2018]
          Length = 217

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 86/214 (40%), Gaps = 23/214 (10%)

Query: 1   MK-LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M      + I++S V    A    + +         E    N +   +V+I+  D+  G 
Sbjct: 1   MNFRKSNIKILISTVLMSCAAFGCLIM--------AENKIINSSGKKDVIIASKDIKQGT 52

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +  + L+ V +  E V    + +      M+ +        I KG+ I  ++++D+ + 
Sbjct: 53  AIDKSSLKKVEYYRECVNSDSVTN------MEYMGNKYASENIYKGEVISKKRVLDKNDD 106

Query: 120 GLSSLLPKGKRAATMDIS--ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177
            L   L + ++  ++ +S   +    G ++  D VD+V    ++E+     V    ++VI
Sbjct: 107 -LKPFLKENEKEISIPLSKFNNDTFIGTLREGDIVDIVHTSVVNEKAED-EVEAKGLKVI 164

Query: 178 -AIDHN---IDSDERVLVGSTATLELTPMQAKAL 207
            A+D     +   ++ ++ ++     +  +   +
Sbjct: 165 GAVDSQGRFLKEQDKNILAASLVFLGSEEEFIKI 198


>gi|84498177|ref|ZP_00996974.1| hypothetical protein JNB_18858 [Janibacter sp. HTCC2649]
 gi|84381677|gb|EAP97560.1| hypothetical protein JNB_18858 [Janibacter sp. HTCC2649]
          Length = 263

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 69/265 (26%), Gaps = 53/265 (20%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN----ILEWVA 70
            AL   ++ +        +  E           V +S+  +  G  +       ++    
Sbjct: 2   LALAGAVLVLLYAQGADKRALEGQQPQ-----TVYVSEKVVPAGTTLKDAERSGLITRTQ 56

Query: 71  FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130
              +    G +  +   N+       + R  +  G  +          G  +  +  G  
Sbjct: 57  VASKAKPAGALAGITSDNSS-----FVARADLPPGQVVLSAAFGSERLGQKAIGVKSGMV 111

Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRS-------------LSERKPTVTVVLSNIRVI 177
           A ++ +   + VG  +     + +                          +V+L+ + VI
Sbjct: 112 AVSVSLEDPNRVGAFVTAGSTITIYDTYELKKLGTDEATAQYNDLSVKGTSVLLTKVSVI 171

Query: 178 AIDHNI---------DSDERVLVGST--------ATLELTPMQAKALVAAQSVAK----- 215
            I                ++    +T         T+ELTP  +  LV A          
Sbjct: 172 GIGTTSLSAPVATEQAEKDKGAAPTTSTPVQSYLVTVELTPADSVKLVHAIQHGANPQNN 231

Query: 216 ----LSLVLRSIADLNPSSSEDSDV 236
               +   L       P +    D 
Sbjct: 232 PAKHIYFALEGPDTTVPPNLSTDDF 256


>gi|269957599|ref|YP_003327388.1| SAF domain-containing protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306280|gb|ACZ31830.1| SAF domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 227

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 23/210 (10%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++           T +V+   P    +V++    L  G+ +    L  V+ P     DG 
Sbjct: 31  LLVALCCGIAASSTVQVLRPAPPPMRSVVVPTHRLEPGVELRAGDLTVVSVPAALAPDGA 90

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
           + D        +  G +  V +  G P+    +     G +++L P G     + +  ++
Sbjct: 91  LTDTA------DAVGRVPAVALEAGLPLSASLVA---GGEVAALAPTGTVVVPVRLDDAT 141

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV--------G 192
           A   +++  D VD+V   SL    P    +   + V+                       
Sbjct: 142 AA--LLRAGDRVDLVSTASLD---PEAAYLARRVLVLTPGSRAAEGGGASGLLGGAVSDA 196

Query: 193 STATL-ELTPMQAKALVAAQSVAKLSLVLR 221
              TL  ++P +A  L AA     ++ VL 
Sbjct: 197 PVVTLVAVSPAEAPGLSAASGAGTVAAVLV 226


>gi|52425835|ref|YP_088972.1| hypothetical protein MS1780 [Mannheimia succiniciproducens MBEL55E]
 gi|52307887|gb|AAU38387.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 258

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 61/181 (33%), Gaps = 10/181 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF--INVLIS--KGDLA 56
           M    L  I    +   ++G+  M      +   ++  +E  A    I++LI+     + 
Sbjct: 1   MNYRVLFFISFLILAMGLSGLFFMLPEESPNTPQQQTTSEKTAPKSQISILIAQTTRQIP 60

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE---LDGVLVRVPILKGDPIRLEKL 113
            G ++            ++       D+    A  E   L G L +  +  G  +  + L
Sbjct: 61  QGTLLQAEDYALSELTVDSDDARANFDLKAWLANNENSSLQGYLAKQTLQVGSFLSPDLL 120

Query: 114 VDRGNGG--LSSLLPKGKRAATMDISISSA-VGGMIKPNDHVDVVMVRSLSERKPTVTVV 170
           +   +    LSSL P  + A  + I   +  +   ++   HV V   +    +       
Sbjct: 121 LSPQHPDYLLSSLDPMQEVAYRIYIKAENGYIFDTLRAGSHVSVGSQQIAGGKNNKERTE 180

Query: 171 L 171
           L
Sbjct: 181 L 181


>gi|116671469|ref|YP_832402.1| hypothetical protein Arth_2923 [Arthrobacter sp. FB24]
 gi|116611578|gb|ABK04302.1| hypothetical protein Arth_2923 [Arthrobacter sp. FB24]
          Length = 256

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 75/247 (30%), Gaps = 40/247 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK   L G+    +  + + ++          Q  +   +   + + VL+ +  +  G  
Sbjct: 1   MKSRLLGGLAALLLAIVGSVLMFNY------AQAADSRAQQGLEPVEVLVVQKAVTAGTP 54

Query: 61  VTP--NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117
           V+     ++  + P   V    +       ++ +    +  V +  G+ +   +LVD   
Sbjct: 55  VSKLSESVKLTSIPGTAVPADAVK------SLSDFSDKVTAVDLQPGEQLLKARLVDPNA 108

Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV------ 170
                +  +P G    ++ +     +GG +   D V V +   + ++      V      
Sbjct: 109 LAAPGTVPVPAGMEEISVLLEPQRVIGGRLAAGDTVGVYISYKMDDKAGADAPVSNDIKG 168

Query: 171 --------LSNIRVIAIDHNIDSDER----------VLVGSTATLELTPMQAKALVAAQS 212
                      + V ++        +                 TL    + A  +V    
Sbjct: 169 FKEFTGKAFHKVLVTSVQQAPPETTKDASSADGPALPSGSVYVTLAREDVDAAEIVFGAE 228

Query: 213 VAKLSLV 219
             K+ L 
Sbjct: 229 FGKIWLS 235


>gi|196048041|ref|ZP_03115219.1| hypothetical secreted protein [Bacillus cereus 03BB108]
 gi|196021297|gb|EDX60026.1| hypothetical secreted protein [Bacillus cereus 03BB108]
          Length = 276

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 74/219 (33%), Gaps = 46/219 (21%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
            TE+  K +  +++K D+A    +T +++    FP   +              +++ G  
Sbjct: 2   QTESKVKPVKAIVTKQDIAPHTKITEDMILEKEFPMSGIPP------KSALKKEDVVGKW 55

Query: 98  VR--VPILKGDPIRLEKLVDRGNGGLSSLLP--KGKRAATMDISISSAVGGMIKPNDHVD 153
            +    I K   + + K+  +     + ++    G+ A  + + + ++ G  I PN +VD
Sbjct: 56  TKDGYGIAKNSYMNVSKIAKQEELPDAGVISLKPGEYAFPVLVDLETSNGNAIVPNTYVD 115

Query: 154 VVMVRSLS-------------ERKPTVTVV------LSNIRVIAIDHNIDSD-------- 186
           +    +L              ++K     V          RV+++  +  SD        
Sbjct: 116 LYFATNLEAEKLGKVVGIADLDKKFISESVKFFGLAAKKARVVSVKDSTTSDVFNAVPNT 175

Query: 187 ---------ERVLVGSTATLELTPMQAKALVAAQSVAKL 216
                             T+ +     + L  A+   K+
Sbjct: 176 QAADGKQPSNTRKQARLYTIAVDKDALQVLNKAKLNGKI 214


>gi|311740868|ref|ZP_07714695.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304388|gb|EFQ80464.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 230

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 61/187 (32%), Gaps = 13/187 (6%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +   V +   DL  G  +    ++    P  ++ D  +         +EL G ++     
Sbjct: 41  ELPRVPVFSRDLPAGAELALADVDLARLPSSSIPDSAV-----AAKPEELTGRVITAAAG 95

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS-ISSAVGGMIKPNDHVDVV----MVR 158
           KG+ I   +L+            +   A  + +      +   +   D VDVV       
Sbjct: 96  KGEVITDARLLGEELVSSLVGGSEDAAARMIPVKLAEPDIIPHLHHGDTVDVVTAVDAAS 155

Query: 159 SLSERKPTVTVVLSNIRVIAID---HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK 215
           S S+            RVIA      +  + E     ST  L L    A  + AA     
Sbjct: 156 SPSDVGEGEAPTAPTARVIATGGRVVSTSNAEGEASSSTVLLALPHDHANDVAAASLSQP 215

Query: 216 LSLVLRS 222
           L++V+  
Sbjct: 216 LTVVIVG 222


>gi|296130407|ref|YP_003637657.1| Flp pilus assembly protein CpaB [Cellulomonas flavigena DSM 20109]
 gi|296022222|gb|ADG75458.1| Flp pilus assembly protein CpaB [Cellulomonas flavigena DSM 20109]
          Length = 241

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 65/209 (31%), Gaps = 18/209 (8%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
           GV  ++  ++   +V          +         V     D      +    L     P
Sbjct: 8   GVLFVLLSVVFAVVVFFVIASYVGNVASQVGSLRTVYRLADDTPAFAELQEGDLVADEVP 67

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132
              +             + EL G  V   +L G  +  + LV   +      L   +R  
Sbjct: 68  ARWLSPSA------EVTLDELVGRKVATNLLAGTMVTSDLLVPPSD------LSTTEREI 115

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRVIAIDHNIDSDERVL 190
            + ++  + V   ++P D VD+  V +      K    +V     V      +  DE   
Sbjct: 116 AISVNQVTGVADRVRPGDRVDIYAVFADVPGLAKQVRVLVRDVRVVSVRGSQVVLDESAA 175

Query: 191 VGS----TATLELTPMQAKALVAAQSVAK 215
            G+      TL L P  A A+  A + A+
Sbjct: 176 SGTQSVVPVTLALEPDDALAVTYAAAFAQ 204


>gi|297563018|ref|YP_003681992.1| SAF domain protein [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296847466|gb|ADH69486.1| SAF domain protein [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 218

 Score = 67.1 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 16/188 (8%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
              P     VL++  DL     +T   L     P  +V  G +        ++      +
Sbjct: 43  RPAPVPVTRVLVASRDLGAADPLTEGDLTARDLPAGSVPGGALAADTAAAGLR------L 96

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
             P+ +G+ I   +L D      +     G  A  + ++   AV G++ P   VDV+   
Sbjct: 97  NAPVRRGEVITDARLADPP----ARAYGPGLVAVPVRVADPGAV-GLLSPGSRVDVLAAG 151

Query: 159 SLSE----RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
              +    R      V+S+  V+A+     S           +  TP++A++L    + +
Sbjct: 152 GSDDLAPARAGPAVEVVSDRPVLALPEEESSGGGEGGA-LIVVAATPVEARSLAGHAAAS 210

Query: 215 KLSLVLRS 222
           +LS+ +R 
Sbjct: 211 RLSITIRG 218


>gi|317491682|ref|ZP_07950117.1| SAF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920116|gb|EFV41440.1| SAF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 269

 Score = 67.1 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 84/275 (30%), Gaps = 34/275 (12%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           L  + +  +   +AGI   +    + V+ + +        I V  +  +L    ++  + 
Sbjct: 2   LFFLSIIVIAVGIAGIFVQKKTPENEVKQDAITA---VNTITVAKAVRELKPYDILKRDD 58

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS-L 124
               +   E   D             +L G LVR  I  G  I    +    +   ++  
Sbjct: 59  YTLTSI--EVAQDIKDRRDISSLDNGDLQGYLVRHNISNGSFILPHMVESPSSSTFAAHS 116

Query: 125 LPKGKRAATMDISISSA-VGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNI----- 174
           L   +   +  +      +   +   D V + +    V    +    +    SNI     
Sbjct: 117 LRSNETPYSYKVKPEDDYLLSSLSIGDEVSLYLRLIEVDKSKKNSVGLVTEGSNIPDANM 176

Query: 175 ------RVIA----IDHNIDSDERVLVGS------TATLELTPMQAKALVAAQSVAKLSL 218
                 RV+     +D      E+    S      T  L L   Q   L   +   +L L
Sbjct: 177 KRYAISRVMGPLSIVDIKKIPKEKTKSYSNEDFVGTIVLRLDSQQLAELKVVEKAGELLL 236

Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253
                 +    S++   + +V  +   ++ ++ G 
Sbjct: 237 F--PFDEYEDESNQKIRMDEVLPQFNSVKELRGGE 269


>gi|295396211|ref|ZP_06806393.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970999|gb|EFG46892.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 173

 Score = 66.7 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 59/162 (36%), Gaps = 18/162 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            ++++   +  G V+T  ++    FP + + +  + D        ++ G      +  G 
Sbjct: 11  RIVVAHTRIDPGTVITARLVTTRVFPPQLIPENAVTDPA------QVVGTTSASSLDAGT 64

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           P+    L++         +P G     + +S  +    +++P   + V    S       
Sbjct: 65  PVTTTALLESAPA----NIPPGHVRVPISVSDPATTS-VLRPGHRIQVYSSTSEEANS-- 117

Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208
              ++ +  V+++     +D+     S  T+ ++   A  L 
Sbjct: 118 ---LVDDALVVSV--TTANDQFTGQTSVVTIAVSQEDAPKLA 154


>gi|54026930|ref|YP_121172.1| hypothetical protein nfa49560 [Nocardia farcinica IFM 10152]
 gi|54018438|dbj|BAD59808.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 221

 Score = 66.3 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 67/180 (37%), Gaps = 12/180 (6%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
             A  I V+++  +L  G V+    L        ++  G + D         L G  +  
Sbjct: 51  PGAARIPVVVAARELPPGTVLAAADLTVAPHEAGSLPAGAVRDPAV------LTGATLTA 104

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            +  G+     ++V      +++      R   + ++  +AV  +++  D VDV+   + 
Sbjct: 105 AMHPGEVFTDLRVVGPRLAEVAAS-TPDARIVPIRLAD-TAVAEILRAGDRVDVIGGETD 162

Query: 161 SERKPT-VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
            +     V  + ++  V+ +    +  ER        + +    A A+ AA     L++V
Sbjct: 163 DDSGTRPVRTLAADAAVVLV---SEPTERGRAERVVLVAMDAEHAVAVAAASLHTALTVV 219


>gi|145222484|ref|YP_001133162.1| SAF domain-containing protein [Mycobacterium gilvum PYR-GCK]
 gi|315442930|ref|YP_004075809.1| flagellar basal body P-ring biosynthesis protein [Mycobacterium sp.
           Spyr1]
 gi|145214970|gb|ABP44374.1| SAF domain [Mycobacterium gilvum PYR-GCK]
 gi|315261233|gb|ADT97974.1| flagellar basal body P-ring biosynthesis protein [Mycobacterium sp.
           Spyr1]
          Length = 217

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 71/180 (39%), Gaps = 11/180 (6%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
             A    V+++  DLA G+ +T   +   +     + DG + DV       E+    +  
Sbjct: 48  PDADRSEVVVTVRDLAPGVALTAADVRVESRAAPLLPDGALTDVD------EVVDATLAG 101

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
           P  +G+ +   +L+       ++      R   + ++ ++ V  +++P D VD+  V + 
Sbjct: 102 PARQGEVLTDVRLLGPRLARSAA--GPDARIVPIPLADAALV-DLVRPGDVVDI--VAAP 156

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           ++       V ++  V+ +    +       G    + L    A+ +  A  V  ++L L
Sbjct: 157 ADDAVAARTVATDAIVVLVSAAENGIGARAGGRVVLVALPAAGAERVAGAALVEAITLTL 216


>gi|163846106|ref|YP_001634150.1| SAF domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523842|ref|YP_002568312.1| SAF domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163667395|gb|ABY33761.1| SAF domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447721|gb|ACM51987.1| SAF domain protein [Chloroflexus sp. Y-400-fl]
          Length = 350

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 102/325 (31%), Gaps = 88/325 (27%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRL-----VSPHHVQTEEVITENPAKFINVLISKGDL 55
           M+   L+ +++  +  +      + L      S      E          ++V+ ++ DL
Sbjct: 1   MRRGALLFLLIGLIVIIGGLAAFLLLRGGAATSTTSQTPEVPPPPTAVPLVSVVQARVDL 60

Query: 56  AVGMVV-TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114
               ++  P++L+ V  P         D+ ++ + + ++ G L+  P++ G  IR + + 
Sbjct: 61  EANTLLNDPSLLDVVEVPVTE-----FDEANEFSNINDVLGKLLINPVVAGQSIRKDNIR 115

Query: 115 DRGNGGLSSLLPKGK---RAATMDISISSAVGGMIKPNDHVDVVMV-------------- 157
           + G          G+   +A  + ++  S V   +  ND VDV+                
Sbjct: 116 EAGLAQRIPTAEPGQAQVKAYPLIVNSLSGVADQVAVNDFVDVIATFSVERQIIRPGPVQ 175

Query: 158 ---------------RSLSERKPTVTVVLSNIRVI------------------------- 177
                             ++   +   ++   +V+                         
Sbjct: 176 VITVNDVDQLVREYQYGENQTFFSTKTIIQRAQVLQIVRPALPAPTEGEETTTEAVTPPA 235

Query: 178 --------AIDHNIDSDERVLVGST-----------ATLELTPMQAKALVAA-QSVAKLS 217
                   A    I   +    G+T             L LT  + + L  A QS A++ 
Sbjct: 236 SSSLPQVDASGQPITGAQTAEGGATTPSTLTEGVWVVVLALTDQEIELLEFALQSQARIV 295

Query: 218 LVLRSIADLNPSSSEDSDVWDVQEE 242
           L LR   D    S+    +  +  E
Sbjct: 296 LALRGANDDAIESTSGVTLDLLVRE 320


>gi|75992380|dbj|BAE45046.1| hypothetical protein [Terrabacter sp. DBF63]
          Length = 239

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 37/228 (16%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K  R   I +     ++ G++                T   A+   VL++  D+  G  V
Sbjct: 35  KRRRPALIGLGVALVVLCGLLGWWF------------TARGAQTHTVLVAASDIEAGKPV 82

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
                +        +  G   +      +Q   G+L    I +G  +     V++     
Sbjct: 83  -----KVQQLSTTEIAGGGGIETMPAEQLQNTAGLLATSNIPEGTVLSPAMFVNKVT--- 134

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLS--------- 172
                 G     + +  S      ++P D V VV+  S      T     +         
Sbjct: 135 ---PDGGMSIVGVSVKPSQMPALGLRPGDTVSVVIAHSPQASGQTGQPGETAALTTGKTW 191

Query: 173 NIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
              V ++    D         T  + L    A+ L+AA    +L++ L
Sbjct: 192 RATVASVGEPGDDG-----ARTIDVTLNSDSARELMAAGGSGRLAIAL 234


>gi|148974886|ref|ZP_01811866.1| hypothetical protein VSWAT3_25214 [Vibrionales bacterium SWAT-3]
 gi|145965395|gb|EDK30644.1| hypothetical protein VSWAT3_25214 [Vibrionales bacterium SWAT-3]
          Length = 216

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 22/219 (10%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           +L+++ ++     +TPN  E       ++   +              G L +  I +G  
Sbjct: 3   ILVAQQEIKRSQPLTPNFYEKKFVHISDLDGYYYTLEKDIVVQP---GALFKEDIKEGTY 59

Query: 108 IRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVG-GMIKPNDHVDVVMV-------- 157
           +  E + + G+   +   L  G+     +++    V    + P D V  V          
Sbjct: 60  LTQEMISNPGDRDYMYLSLNDGELPYFYEVTGIGVVQTSTLTPGDKVSFVSTTSSKSNLV 119

Query: 158 --RSLSERKPTVTVVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212
                        V++S  RV+ +     + DS +      +  + L       L  AQ 
Sbjct: 120 ESGYGDIGDLVSRVIISGARVLQVIKGSEDTDSQDAEDKKYSLVIALNMRSVLKLEMAQK 179

Query: 213 VAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
           +  ++++    +++           D+ E    ++ ++ 
Sbjct: 180 IGDVNII---PSEIENRYLSIRS-SDLLETQFGVRELRG 214


>gi|126437236|ref|YP_001072927.1| SAF domain-containing protein [Mycobacterium sp. JLS]
 gi|126237036|gb|ABO00437.1| SAF domain [Mycobacterium sp. JLS]
          Length = 218

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 64/182 (35%), Gaps = 9/182 (4%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
            ++     ++V+++  DL  GM +  + +     P   V DG   D         + G+ 
Sbjct: 44  RSDPDGDQVDVVVAATDLTPGMDLAESDVRVERRPLTTVPDGAAKDP------TAVIGMT 97

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
           V  P  +G+ +   +L+       ++      R  ++ ++   A+  +++  D VDV+  
Sbjct: 98  VAGPTRRGEVLTDLRLLGPRIAEAAA--GPDARIVSLQLAD-GALVDLVRTGDVVDVLAA 154

Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
            +          V++   V+ +                 + L    A  +  A     ++
Sbjct: 155 PTSDTGADARPRVIATRAVVVLVSEKRQGPGAAGERAVLVALPAQAANEVAGASLTQAVT 214

Query: 218 LV 219
           L 
Sbjct: 215 LT 216


>gi|169628178|ref|YP_001701827.1| hypothetical protein MAB_1083c [Mycobacterium abscessus ATCC 19977]
 gi|169240145|emb|CAM61173.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 224

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 80/216 (37%), Gaps = 26/216 (12%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           + + +  L A ++A R              +       V+++  DL+ G +++ + +   
Sbjct: 31  IAAAILVLFAALLAFR-------------PDPADDRAEVVVAARDLSPGTILSSDDVRLE 77

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
                 + DG   +           G  +  P+ +G+ +   +++       ++   K  
Sbjct: 78  KRSTTILPDGVRTESATLF------GATLAGPVRRGEMLTDVRVLGPRLAESAA--GKDA 129

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----PTVTVVLSNIRVIAIDHNIDS 185
           R   + ++ ++ V  MI+  D VD++ V           P    VL++  V+ +     +
Sbjct: 130 RIVPVPLADAATV-DMIRTGDVVDILTVAGHEPGAARDTPAEPTVLASGAVVVLVSPKPA 188

Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            + V       + L P QA  + A   V  ++L  R
Sbjct: 189 AKGVGTERVVMVALPPQQANRVAAIALVQAVTLTFR 224


>gi|320533999|ref|ZP_08034557.1| SAF domain protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133787|gb|EFW26177.1| SAF domain protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 235

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 71/177 (40%), Gaps = 19/177 (10%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +   +L +K  +  G V+    L   +   +      +  + + + + ++ G   RV I 
Sbjct: 68  QRAQMLAAKDTIKAGQVIDKEDLVSASVSSD------LTTLVRADQIDQVVGRTARVEIS 121

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
           KG  +   +L      G         +   +  +      G ++P D VDVV + S +  
Sbjct: 122 KGQLLDTSQLATDPVPG------GDLQVVGVSANAGRFPAGGLQPGDKVDVVDIGSQN-- 173

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                V++S+ +V+A   +  + +    G+  ++ +    A  L +A +   ++++L
Sbjct: 174 -----VIVSDAQVLAAKPSSGTSDDWTSGAVISVLVDKKGAAKLASASANGTIAVIL 225


>gi|23466106|ref|NP_696709.1| hypothetical protein BL1553 [Bifidobacterium longum NCC2705]
 gi|23326839|gb|AAN25345.1| hypothetical protein BL1553 [Bifidobacterium longum NCC2705]
          Length = 220

 Score = 65.1 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 66/220 (30%), Gaps = 27/220 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R+   +     AL  G+  +  +                +   ++++   +  G ++
Sbjct: 28  RRRRMADALRRLTAALCVGLAVLFGLE---------AVLAVVETEPMVVAARSIRRGDII 78

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               ++    P   +             ++++ G + ++ I   DPI             
Sbjct: 79  LAADVQLADMPVSAI------GPSWACNIEDVVGKVAQIDIEAADPIS------THMARD 126

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           + + P G     + ++ S      +   D V +V              +  N  V+ +D 
Sbjct: 127 APVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGCEGADC---TLAENATVMNVDK 180

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
              +          +  + P  A  ++  Q    +  V+R
Sbjct: 181 PDTTGALGSNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 220


>gi|108801257|ref|YP_641454.1| hypothetical protein Mmcs_4293 [Mycobacterium sp. MCS]
 gi|119870408|ref|YP_940360.1| SAF domain-containing protein [Mycobacterium sp. KMS]
 gi|108771676|gb|ABG10398.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119696497|gb|ABL93570.1| SAF domain [Mycobacterium sp. KMS]
          Length = 218

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 65/188 (34%), Gaps = 9/188 (4%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
                V ++     ++V+++  DL  G  +  + +     P   V DG   D        
Sbjct: 38  AAVAAVRSDPDGDQVDVVVAATDLTPGTELAESDVRVERRPLTTVPDGAAVDP------T 91

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
            + G  V  P  +G+ +   +L+       ++      R  ++ ++   A+  +++  D 
Sbjct: 92  AVIGATVAGPTRRGEVLTDVRLLGPRIAEAAA--GPDARIVSLQLAD-GALVDLVRTGDV 148

Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
           VDV+   + +  +     V++   V+ +                 + L    A  +  A 
Sbjct: 149 VDVLAAPASNTGEEARPRVIATRAVVVLVSEKRQGPGAAGERAVLVALPAQAANDVAGAS 208

Query: 212 SVAKLSLV 219
               ++L 
Sbjct: 209 LTQAVTLT 216


>gi|134298817|ref|YP_001112313.1| hypothetical protein Dred_0953 [Desulfotomaculum reducens MI-1]
 gi|134051517|gb|ABO49488.1| hypothetical protein Dred_0953 [Desulfotomaculum reducens MI-1]
          Length = 232

 Score = 64.8 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 74/218 (33%), Gaps = 15/218 (6%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++ +  V+    + +     N  + I++ +    +  G V+TP  +    F +       
Sbjct: 19  MLIVIAVTIPATKYQREWVANNQETISLPVPAHVIYAGHVITPGDITIRKFLKAAQEPTS 78

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI-S 139
           I D        E+ G +    +   + IR +KLV   N     +L  G+   ++      
Sbjct: 79  IQD------TTEITGRVAASDLYPMEQIRADKLVPPEN-----ILNTGEAYVSIKADSLE 127

Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKPTV--TVVLSNIRVIAIDHNIDSDERVLVGSTATL 197
             +GG I+PN  VDV  V  L      +  + ++S I V A      +     V     L
Sbjct: 128 QILGGQIQPNMQVDVYHVVDLENAPVLLAKSAIVSGI-VGASGSVTPTQNDPPVPKWVLL 186

Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
           ++   +           K+ L        N S      
Sbjct: 187 KVKETECANFTRPVMGGKVFLSQTGYMSTNVSQPTTQT 224


>gi|229819398|ref|YP_002880924.1| SAF domain protein [Beutenbergia cavernae DSM 12333]
 gi|229565311|gb|ACQ79162.1| SAF domain protein [Beutenbergia cavernae DSM 12333]
          Length = 207

 Score = 64.8 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 65/187 (34%), Gaps = 13/187 (6%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                  ++VL++  D+A    + P  +  VA P + V    +      +A  ++ G  +
Sbjct: 29  RPPDPPSVDVLVAAHDIAAAQEIVPADVRVVALPADAVPPDAL------DAADDVVGRQL 82

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
              +  G P+    ++     GL+   P+G     +  +       +++P   VD+V   
Sbjct: 83  AHALPAGYPLGPGMVLGP---GLADGAPRGTTVVPVRFADPLLTS-VLEPGATVDLVAAG 138

Query: 159 SLSERKPTVTV---VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK 215
                   +     VL+ +   A                  + + P  A  +V A +   
Sbjct: 139 DQEAGAHVLATDAVVLARVDGEAGGGIGGLTSSAPDAPLLLVAVRPDVATLVVEASARGT 198

Query: 216 LSLVLRS 222
           L++VL  
Sbjct: 199 LTVVLVP 205


>gi|229818382|ref|ZP_04448663.1| hypothetical protein BIFANG_03684 [Bifidobacterium angulatum DSM
           20098]
 gi|229784252|gb|EEP20366.1| hypothetical protein BIFANG_03684 [Bifidobacterium angulatum DSM
           20098]
          Length = 221

 Score = 64.8 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 24/184 (13%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              ++ +   +A G  +  + +  +  P   V    +    +        G + + PI  
Sbjct: 55  TDTIVTAATPIARGTTIRHDDVVMMTVPASPVTGKALHTTDK------AVGSIAQHPIEA 108

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-------V 157
           G P+    +      G +  +  G     + ++ S      + P D V +V         
Sbjct: 109 GQPLYAGSV------GKAPTITTGDTVLDIAVANSI---NALIPGDTVSLVSAVGCEPTS 159

Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
           +  +  +P    + S   ++  +     D      +  T+ L P  A  ++ A     + 
Sbjct: 160 QEHNNEQPAACTLASQAMIM--ETKARQDGNSTERNLLTVALDPQSAIRVMKAGESGAII 217

Query: 218 LVLR 221
            V R
Sbjct: 218 AVHR 221


>gi|134298813|ref|YP_001112309.1| SAF domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134051513|gb|ABO49484.1| SAF domain protein [Desulfotomaculum reducens MI-1]
          Length = 215

 Score = 64.8 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 70/233 (30%), Gaps = 40/233 (17%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   + + I +         +I           +         K + V      +  G  
Sbjct: 1   MDRKKGIIISLILSLVFTGAVIF----------SSNTKYAAATKTVEVAAVNQYIPAGKK 50

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + ++    PE+         ++      ++ G  + V ++K   I  + +       
Sbjct: 51  ITKDDIKMDRVPEKMA-------INLVQKADDVVGKTILVSLVKDQYIWKKAIAQGEAK- 102

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
                 +G     +   + S+    +   + VD+ +V      +    ++    RV+   
Sbjct: 103 -----KEGYIQVFIPTDLPSSA--CVIAGEVVDIYLVSKG-GIESNSGLIYKGARVLNSL 154

Query: 181 HNIDSD--------------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
               ++                  V  T  +E+  + A  +V A S  ++ LV
Sbjct: 155 DQSGNEIDPARKNEVSQMAVNGSKVPVTVGVEVPEIVAPVIVQACSKKEIYLV 207


>gi|317133361|ref|YP_004092675.1| hypothetical protein Ethha_2449 [Ethanoligenens harbinense YUAN-3]
 gi|315471340|gb|ADU27944.1| hypothetical protein Ethha_2449 [Ethanoligenens harbinense YUAN-3]
          Length = 287

 Score = 64.8 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 85/269 (31%), Gaps = 51/269 (18%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            RL+  ++S   A+V G   + LV+   +             + V+ +K  +  G  +TP
Sbjct: 37  KRLVASILSIGLAVVVGFGGVFLVNRLTMA-----------TVPVVRAKEIIPQGTQITP 85

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           N++E     + N+                + G      I+  D I  +KL          
Sbjct: 86  NMIEVDQVSKYNLQSNV------TGNTSLVVGAYATTEIMPQDNITGDKLSKSNP---VY 136

Query: 124 LLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVM-----------VRSLSERKPTVTVVL 171
            L  G+   ++ + ++S A+ G +K  D V V                 +  + T    L
Sbjct: 137 TLDTGEMLVSVPVKNLSDALAGQLKAGDIVRVSALVASGSTAGSNNAGGTANQTTTPAEL 196

Query: 172 SNIRVIAIDHNIDSDERVLVG------------------STATLELTPMQAKALVAAQSV 213
             ++V A+  +      V                     ++ TL +   Q   L      
Sbjct: 197 QYVKVAAVAASNGQSAAVSQAQAKTAIGTTTSSNTSNLPASVTLYVNEQQLSRLTQMSQS 256

Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
            +L+  L        + +   +   + E 
Sbjct: 257 -ELTFALVYRGGGTEAKTLLQEQTQLLEG 284


>gi|302335340|ref|YP_003800547.1| SAF domain protein [Olsenella uli DSM 7084]
 gi|301319180|gb|ADK67667.1| SAF domain protein [Olsenella uli DSM 7084]
          Length = 229

 Score = 64.8 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 70/197 (35%), Gaps = 17/197 (8%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
           A  + +      +E I     + + +++S+G L  G VV    +    +  +      + 
Sbjct: 25  AESVRAEAERTRDEAIARYGGEVVRLVVSRGPLEPGDVVDQADVSERDWVTDLAPSDALT 84

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV 142
                 ++ ++ G  V VP+    P+         +    + +P G  A ++ I+    V
Sbjct: 85  ------SLDDVVGREVTVPVAANAPVTALAF---RDVAAMADIPAGHVALSIPITDKLGV 135

Query: 143 GGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPM 202
              I     V   +V          T + ++  V+A   +      +  G   TL +   
Sbjct: 136 SRSIGVGTSVIGYVVDDKG-----STPIATDATVLA---SPGETSGLGTGGQLTLAIRSE 187

Query: 203 QAKALVAAQSVAKLSLV 219
              A+++A +   L +V
Sbjct: 188 DVDAVLSASAAGTLRIV 204


>gi|296393686|ref|YP_003658570.1| SAF domain-containing protein [Segniliparus rotundus DSM 44985]
 gi|296180833|gb|ADG97739.1| SAF domain protein [Segniliparus rotundus DSM 44985]
          Length = 227

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 21/216 (9%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76
           LVA       +         +           +++  DL  G+ + P  L   +    +V
Sbjct: 22  LVAARRVAAGLLLLLAGGLAIRAHARPGQAAAVVAAHDLRPGVALGPADLAVRSLSPGDV 81

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136
             G + D        +L G  V  P+  G+ +   +++     GL++ +    RA ++ +
Sbjct: 82  PAGAVADPR------QLLGRTVAGPVRSGEALTDVRIITPRLAGLATAI-PDARAVSVRL 134

Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTV-----------TVVLSNIRVIAIDHNIDS 185
                +  M++P D VDVV V                      V+     V+ +  +   
Sbjct: 135 PD-QTLADMLRPGDVVDVVTVPQHQPGATEDAATKQTGIRPPEVLAQAAVVLLV--SEPE 191

Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
                 G  A L +    A+ + A   +  ++++ R
Sbjct: 192 RSSAAQGRVALLAMDNTAAQKVAAVTLIQAVTVISR 227


>gi|307245413|ref|ZP_07527501.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307254368|ref|ZP_07536206.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258826|ref|ZP_07540558.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306853754|gb|EFM85971.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306862667|gb|EFM94623.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867177|gb|EFM99033.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 268

 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 60/199 (30%), Gaps = 18/199 (9%)

Query: 6   LMGIVVSGVFALVAGIIAM--------RLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           L+ I +  +     G+  +          V       E   +    K I  +    DL  
Sbjct: 2   LLIISLVIIVLGFGGLFMLPTNEGTTTENVGTTTTSEESSNSPVTEKVITTVTLNRDLEK 61

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIRLEKLV 114
           G ++ P                   D+      +    L G LV   +  G  +    ++
Sbjct: 62  GTLIQPEDYTLSELTVAETSPLVDSDLKALLDAEPNHSLQGFLVTENLKAGSLLTPNVII 121

Query: 115 DRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL----SERKPTV 167
              +    L SL P  + A  + +      +   ++  D V V  V+         + ++
Sbjct: 122 TPEDPRFILLSLDPSQEVAYRIYVQDAEQYILDSVRGGDLVSVYSVQQDLAHPEREQNSL 181

Query: 168 TVVLSNIRVIAIDHNIDSD 186
             +  N++V+ +      +
Sbjct: 182 VKIADNLKVLQVKSFTQEE 200


>gi|226365103|ref|YP_002782886.1| hypothetical protein ROP_56940 [Rhodococcus opacus B4]
 gi|226243593|dbj|BAH53941.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 227

 Score = 64.4 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 72/170 (42%), Gaps = 14/170 (8%)

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           DL  G+V+T   +E V     ++ DG +       A+ ++DG  +  P   G+ +   ++
Sbjct: 66  DLQPGVVLTKADVELVELEAGSLPDGAVT------AVADVDGRTLAGPTRAGETLTDVRV 119

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTV 169
           +       ++ +    R   + ++   AV  +++  D VDV+       S  +R+P  TV
Sbjct: 120 LGPRLAAAAAGM-DDARIVPVRLADP-AVTELLREGDRVDVLTVDPDTPSNPDRRPGATV 177

Query: 170 VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           + S   V+ +  + +  ++        L L    A  + AA   + +++ 
Sbjct: 178 LASRAVVVLVTPSENGRDQRE--RVVMLALPASDATTVAAASLTSAITVT 225


>gi|309792344|ref|ZP_07686813.1| SAF domain-containing protein [Oscillochloris trichoides DG6]
 gi|308225610|gb|EFO79369.1| SAF domain-containing protein [Oscillochloris trichoides DG6]
          Length = 347

 Score = 64.4 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 89/289 (30%), Gaps = 81/289 (28%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           +      T+          ++V+ ++ D+A   V+    +E V   +            Q
Sbjct: 33  LIGGSPATDVTSEPTAIPLVDVVHARFDIAANTVIKDTDVELVKIKQTEFNPD-----TQ 87

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK------RAATMDISISS 140
            + + ++ G L    I+   PI  + L++    GLS  +P  +      +A  + ++  S
Sbjct: 88  SSNLMDVVGKLTTSKIVAEQPINTKNLIEP---GLSQQIPTAEADRSTNKAYPLIVNNLS 144

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKP----------------------------TVTVVLS 172
            V   IKP D VDVV+   +  R+                             T   ++ 
Sbjct: 145 GVSDQIKPGDFVDVVVTFQIPRRQSYPTGLTYEEVGGQMIPMIERELKDELFYTTKTIVQ 204

Query: 173 NIRVI-------------------------------------AIDHNIDSDERVLVGS-T 194
             +V+                                     A     D+   +  G+ T
Sbjct: 205 RAQVLKILRPQVALPEETPVAGSDAPVNSSSLPEVDASGQPIAPGTEADTTGSISQGAWT 264

Query: 195 ATLELTPMQAKALVAA-QSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
             L +   + + +  A  + +++ LVLR   D     +       +  E
Sbjct: 265 LVLSVNDQEVELIEFALSTNSRIVLVLRGAGDTEFEETIGVTYDLLTSE 313


>gi|219883046|ref|YP_002478210.1| hypothetical protein Achl_4442 [Arthrobacter chlorophenolicus A6]
 gi|219862052|gb|ACL42393.1| conserved hypothetical protein [Arthrobacter chlorophenolicus A6]
          Length = 246

 Score = 64.4 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 30/237 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK TRL+G   + + A+   +     V     +  +         +N+ +    +     
Sbjct: 1   MK-TRLIGAAAALLLAITGTVAVTSYVQGADQRALKGAA-----TMNIYVVDKSVPANTP 54

Query: 61  VT--PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
                  ++  + P   V  G + D      +  L G +   P+L G+ +   ++VD  +
Sbjct: 55  AADLAKFVKPASVPASTVAAGAVTD------LGTLTGKVTSAPLLPGEQLLDGRMVDPAS 108

Query: 119 GGL--SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
             +  ++ +P+G +  T+ +     VGG +   D V V +  +        T  L+  +V
Sbjct: 109 LLVPGTAPVPEGMQEITVQLGPDRVVGGQLAAGDTVGVFVSFTEGAGPKGPTTHLAFQKV 168

Query: 177 IAIDHNIDSDERVLVGST--------------ATLELTPMQAKALVAAQSVAKLSLV 219
           +         E     +                TL      A+ +V A     + L 
Sbjct: 169 LVTSVQGAPAEPTGKAAATAPPGPPVPAGAMLITLARPAADAERIVFAAEFGTIWLS 225


>gi|307263190|ref|ZP_07544811.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|306871552|gb|EFN03275.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 268

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 60/199 (30%), Gaps = 18/199 (9%)

Query: 6   LMGIVVSGVFALVAGIIAM--------RLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           L+ I +  +     G+  +          V       E   +    K I  +    DL  
Sbjct: 2   LLIISLVIIVLGFGGLFMLPTNEGTTTENVGTTTTLEESSNSPVTEKVITTVTLNRDLEK 61

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIRLEKLV 114
           G ++ P                   D+      +    L G LV   +  G  +    ++
Sbjct: 62  GTLIQPEDYTLSELTVAETSPLVDSDLKALLDAEPNHSLQGFLVTENLKAGSLLTPNLII 121

Query: 115 DRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL----SERKPTV 167
              +    L SL P  + A  + +      +   ++  D V V  V+         + ++
Sbjct: 122 TPEDPRFILLSLDPSQEVAYRIYVQDAEQYILDSVRGGDLVSVYSVQQDLAHPEREQNSL 181

Query: 168 TVVLSNIRVIAIDHNIDSD 186
             +  N++V+ +      +
Sbjct: 182 VKIADNLKVLQVKSFTQEE 200


>gi|293391333|ref|ZP_06635667.1| flp operon protein C [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|32452622|gb|AAP43984.1| RcpC [Aggregatibacter actinomycetemcomitans]
 gi|290951867|gb|EFE01986.1| flp operon protein C [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 274

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 90/267 (33%), Gaps = 34/267 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN------VLIS--K 52
           M    L+ I V  +   + GI+          Q   +I               +L +  K
Sbjct: 1   MNYRTLLIISVLTLAVGIGGIMFTPAFDNTENQQTIIINNQSVPEAEKKPEKLILTAELK 60

Query: 53  GDLAVGMVVTPNILEW--VAFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
            D++ G ++  +      ++ PE++ + D  + +    N +Q L G L+   +  G  + 
Sbjct: 61  NDVSKGHLLQADDYILNEISVPEDSTLVDNDLREATTKNGIQGLQGYLMAENVRAGSFLS 120

Query: 110 LEKLVDRGNGGL--SSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSE---- 162
            + ++   +     SSL P  + A  + + S    +   I   D+V V   +  S+    
Sbjct: 121 NKSIISPNDPRFFTSSLNPNQEVAYRIYVRSGDDYILNTILSGDYVSVYSQQIASDSRNT 180

Query: 163 -RKPTVTVVLSNIRVIA---IDHNIDSDERVLV-----------GSTATLELTPMQAKAL 207
             +  +  VL    V+         +                       L++T  QAK  
Sbjct: 181 YDRKDLVKVLGKAVVLQARNFAQVAEQGTEAEKALGLVPNNEVYAGYVALKITAEQAKKF 240

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDS 234
            +    +KL ++L +  +     S   
Sbjct: 241 YSLDRESKL-VILPAENNTQEVDSRGV 266


>gi|257793106|ref|YP_003186504.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479798|gb|ACV60115.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 272

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 76/234 (32%), Gaps = 25/234 (10%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
             A +AG+ A+ LV+       + +  +        ++  DL VG V+ P  +     P 
Sbjct: 15  GAAWIAGLAALGLVTAF---VTDRVASHKVPMATAYVAAHDLTVGEVIGPKDVTRTVVPV 71

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132
             +  G +             G  V  P+ +G  +    L   G   G+  L     RA 
Sbjct: 72  STLPPGALT--------ASPIGKTVTAPVYQGQVLVGGDLGHMGGVDGVMRLYGMQTRAY 123

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAIDHNIDSDERVLV 191
            + +S  S     I     VDV+              +V  N  VIA+    D       
Sbjct: 124 PLTLSTQSVPLTDISVGQAVDVIAQMPSPYGAGNITKLVAQNAPVIAVATAQD------- 176

Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245
                + +    ++AL  A +  KL + L       P+ +  + +        +
Sbjct: 177 ----VILVGVTDSEALQMANAT-KLYVALSPETPWVPAETASTSIPGATSNTTQ 225


>gi|25027510|ref|NP_737564.1| hypothetical protein CE0954 [Corynebacterium efficiens YS-314]
 gi|259507082|ref|ZP_05749982.1| secreted protein [Corynebacterium efficiens YS-314]
 gi|23492792|dbj|BAC17764.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259165360|gb|EEW49914.1| secreted protein [Corynebacterium efficiens YS-314]
          Length = 215

 Score = 64.0 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 75/225 (33%), Gaps = 36/225 (16%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
            T L+   ++    +VAG +    +                    V++   D+  G  +T
Sbjct: 14  RTLLLRRALAATLLIVAGFLFAGSLISTDP--------------RVVVFSRDIPAGTEIT 59

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121
              LE    P + V D  I         +E  G +    +  G+ +   + V       L
Sbjct: 60  DQDLELRRIPADLVPDQVIRIP------EEALGRITASSVTAGEWVTAPRFVGTELVSSL 113

Query: 122 SSLLPKGKR------AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
           +  +              + ++  S +  ++ P D + V+     +        + S  +
Sbjct: 114 TDDIDPAAASTDPFNMVPLKLADPSIIP-LLLPGDTISVISQNPDTG---LPATIASGGK 169

Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           V+ +     +D      +T  + L    A A+ AA   + L++VL
Sbjct: 170 VVLVGDTAGAD-----PATVLIALPQTDAAAVAAAALNSPLAVVL 209


>gi|229495106|ref|ZP_04388852.1| SAF domain protein [Rhodococcus erythropolis SK121]
 gi|229318037|gb|EEN83912.1| SAF domain protein [Rhodococcus erythropolis SK121]
          Length = 234

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 80/225 (35%), Gaps = 35/225 (15%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           + + V A +  ++  R              +     + V++S  DL  G V+  + +E  
Sbjct: 32  IAAVVLATLGVVLFFRG-------------DPATDTVAVVVSSRDLTPGQVIADSDVEIR 78

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
               + + +G + D         + G  V  PI  G+ +   ++++R   GLS       
Sbjct: 79  EIDSKQLPEGVVSDTDL------VVGRTVAGPIRSGETVTDVRVLNRRLAGLSVG-TDDA 131

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-------------KPTVTVVLSNIRV 176
           R   + ++ + AV  +++  D VDV+ V   + R                   +L+   V
Sbjct: 132 RIVPVRLADA-AVAEILRSGDVVDVLTVGPDTSRPDTPHPDTPNESVADKAPQILAAGAV 190

Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
           +A+        R        L L    A  + AA     +++  R
Sbjct: 191 VAL-VTTSESTRNQQEQVILLALPTPAANVVAAASLSNAITVTFR 234


>gi|297572143|ref|YP_003697917.1| SAF domain protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296932490|gb|ADH93298.1| SAF domain protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 203

 Score = 63.6 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 55/177 (31%), Gaps = 22/177 (12%)

Query: 13  GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72
             FA +  + A  LVS                    +++  DL  G  ++ + L  +  P
Sbjct: 7   IGFAALVAVFAQSLVSALDSSAPARYRA--------VVAATDLPAGHQLSDSDLSVLPLP 58

Query: 73  EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132
            +               + ++ G  + V + KG  I    ++       +S    G   A
Sbjct: 59  TQL--------PGSTVNVTDVSGHHLLVSVPKGALISTHHVLSPQTLEQAS---PGYVIA 107

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDE 187
            + ++ +  +  +I    +VD+                ++  +IRV  +        
Sbjct: 108 PVLLADTGGLS-LIHTGSYVDLFKPGKESLDGSSSEAELIAHHIRVAGVAKTAGEKN 163


>gi|20808475|ref|NP_623646.1| hypothetical protein TTE2077 [Thermoanaerobacter tengcongensis MB4]
 gi|20517094|gb|AAM25250.1| hypothetical protein TTE2077 [Thermoanaerobacter tengcongensis MB4]
          Length = 187

 Score = 63.6 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 76/206 (36%), Gaps = 33/206 (16%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              +   +++ VF  +A  + +  V                  +NV+ +   +  G V+T
Sbjct: 2   SKIIKIGIITAVFVFLAAFLILNSVQG---------------TVNVVAAAKPINAGTVIT 46

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            ++L   + P                  QE+ G  +    +KGD I    ++ +G     
Sbjct: 47  QDMLTTKSIPASLA-------ADLVKNPQEIVGKSLNTSRVKGDFIPHSIVMQKG----- 94

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
             +  G    ++++        +I   D + +V++ +++         +S ++V +I+  
Sbjct: 95  LEVAPGDVLISINVPYED--AKLISVGDTISLVLLSNIAGGANQT---VSGLKVYSIEQT 149

Query: 183 IDSDERVLVGSTATLELTPMQAKALV 208
             +     V + A LE TP +A  + 
Sbjct: 150 TSAVNGT-VSTIAVLETTPDKASLIA 174


>gi|332534350|ref|ZP_08410191.1| hypothetical protein PH505_bg00020 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036169|gb|EGI72643.1| hypothetical protein PH505_bg00020 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 255

 Score = 63.6 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 80/250 (32%), Gaps = 23/250 (9%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
                 + + + S        +   N    +   +   +++ G  VT + +E  +     
Sbjct: 8   GATTAALTLLITSGMLASALGIRQVNDENSVTAWVVNKNMSAGQTVTVHDVEQKSID--- 64

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD 135
               + +        + L G  +    +   P+     +   +  LS  +P G+   T+ 
Sbjct: 65  -PSNYSNIALSVQNPRALIGQKLATNKMVEQPLFDTDFIRAKSQNLSEAIPAGRVLYTLK 123

Query: 136 ISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI--------------DH 181
           ++        I   D +D+V      +    V  V  ++++I +              D+
Sbjct: 124 LNTLDIPLSRIHKGDRLDIVA-----KTNRLVRTVARDVQLIGVSKGPKSQAEKNGVMDN 178

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241
                     G +  L + P    +L    +  K+S+++ S  D+     ++        
Sbjct: 179 LAKESNSATGGVSLVLAVLPKDVYSLAGIDNADKVSIIVHSAYDIEQGRLQNFSRLQTSR 238

Query: 242 EGKEIQIIKA 251
             + ++ +K 
Sbjct: 239 TIEVVKGVKN 248


>gi|307261006|ref|ZP_07542688.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869308|gb|EFN01103.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 268

 Score = 63.6 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 60/199 (30%), Gaps = 18/199 (9%)

Query: 6   LMGIVVSGVFALVAGIIAM--------RLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           L+ I +  +     G+  +          V       E   +    K I  +    DL  
Sbjct: 2   LLIISLVIIVLGFGGLFMLPTNEGTTTENVGTTTTSEESSNSPVTEKVITTVTLNRDLEK 61

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE---LDGVLVRVPILKGDPIRLEKLV 114
           G ++ P                   D+      +    L G LV   +  G  +    ++
Sbjct: 62  GTLIQPEDYTLSELTVAETSPLVDSDLKALLDAETNHSLQGFLVTENLKMGSLLTPNLII 121

Query: 115 DRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL----SERKPTV 167
              +    L SL P  + A  + +      +   ++  D V V  V+         + ++
Sbjct: 122 TPEDPRFILLSLDPSQEVAYRIYVQDAEQYILDSVRGGDLVSVYSVQQDLAHPEREQNSL 181

Query: 168 TVVLSNIRVIAIDHNIDSD 186
             +  N++V+ +      +
Sbjct: 182 VKIADNLKVLQVKSFTQEE 200


>gi|258510582|ref|YP_003184016.1| SAF domain-containing protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477308|gb|ACV57627.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 264

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 68/207 (32%), Gaps = 25/207 (12%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
           A +AG+ A+ LV+       + +  +        ++  DL VG  +    +     P   
Sbjct: 17  AWIAGLAALGLVTAF---VMDRVATHKVPMATAYVASHDLTVGETIGAKDVTRTVVPVST 73

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATM 134
           +  G +             G  V  P+ +G  +    L   G   G+  L     RA  +
Sbjct: 74  LPPGALT--------ASPIGKTVTAPVYQGQVLVGGDLGHMGGVNGVMRLYGMQTRAYPL 125

Query: 135 DISISSAVGGMIKPNDHVDVVMVRSLSER-KPTVTVVLSNIRVIAIDHNIDSDERVLVGS 193
            +S  S     I     VDV+              +V  N  VIA+    D         
Sbjct: 126 TLSTQSVPMTDISVGQAVDVIAQMPSPNGAGNVTKLVAQNAPVIAVATAQD--------- 176

Query: 194 TATLELTPMQAKALVAAQSVAKLSLVL 220
              + +    ++AL  A +  KL + L
Sbjct: 177 --VILVGVTDSEALQMANAT-KLYVAL 200


>gi|325676315|ref|ZP_08155994.1| hypothetical protein HMPREF0724_13777 [Rhodococcus equi ATCC 33707]
 gi|325552876|gb|EGD22559.1| hypothetical protein HMPREF0724_13777 [Rhodococcus equi ATCC 33707]
          Length = 234

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL++  DL  G V+TP+ +  VA P+ ++ +G +  V       +  G  V  P+  G+
Sbjct: 66  PVLVAAHDLTPGTVLTPDDVRVVARPDPDLPEGSVRVVA------DASGRTVASPVRAGE 119

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +   +L+       ++      R   + ++    +  +I+  D VDV+ V    +    
Sbjct: 120 MLTDVRLLGPRLTEAAAG-APDARMVPVRLTDP-GLSELIRAGDRVDVLTV---DQTSGP 174

Query: 167 VTVVLSNIRVIAIDHNI 183
                    V+A D  +
Sbjct: 175 TETRRPAATVLATDATV 191


>gi|171921000|gb|ACB59183.1| RcpC [Actinobacillus suis ATCC 33415]
          Length = 269

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 65/210 (30%), Gaps = 20/210 (9%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAM-----RLVSPHHVQTEEVITENPAKFINVLISK--- 52
           M    L  I    +     G+  +      +            T  P     V+ +    
Sbjct: 1   MNYRVLFIISTFILVIGFGGLFMLPNAEDNVPQNETAAASTETTTQPEVATKVITTATLN 60

Query: 53  GDLAVGMVVTPNILEWVA--FPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
            DL  G ++            PE + +    +  + +   +  L G +    I  G  ++
Sbjct: 61  RDLTKGTLIQAEDYTLSELTVPETSPLLSNDLKSLLEAATVPTLQGFVATENIKAGSLLQ 120

Query: 110 LEKLVDRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVV-----MVRSLS 161
            E L+   +    L S+ P+ + A  + I S    +   ++  D V V      +     
Sbjct: 121 PELLITPDDPRFILFSINPQQEVAYRVYIQSAEQYILDSVRSGDSVSVFSQQTDLAHRER 180

Query: 162 ERKPTVTVVLSNIRVIAIDHNIDSDERVLV 191
           ++   V  +  N+ V+ +      + +   
Sbjct: 181 DQGSLVK-LADNLTVLQVKTFTAEENKNAS 209


>gi|219850069|ref|YP_002464502.1| Flp pilus assembly protein CpaB [Chloroflexus aggregans DSM 9485]
 gi|219544328|gb|ACL26066.1| Flp pilus assembly protein CpaB [Chloroflexus aggregans DSM 9485]
          Length = 351

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 86/280 (30%), Gaps = 84/280 (30%)

Query: 42  PAKFINVLISKGDLAVGMVV-TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
               +NV+ +  D+    ++  P +LE V  P         D+ ++ +++ ++ G LV  
Sbjct: 47  AIPLVNVVQAAVDIEANTLLNDPTLLEVVEVPITE-----FDEQNEFSSINDVFGKLVIN 101

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGK---RAATMDISISSAVGGMIKPNDHVDVVMV 157
           P+  G PI  + + + G   +      G+   +A  + ++  S V   +  ND VDV+  
Sbjct: 102 PVQAGRPITRDNVRNPGLAQMLPTAEPGQPRVKAYPLVVNNLSGVADQLAVNDFVDVIAT 161

Query: 158 RSLSERKP-----------------------------TVTVVLSNIRVI-----AIDHNI 183
            S+  +                               T   ++   +V+     AI    
Sbjct: 162 FSVERQIIRPGPRQVITVNDVDQVIREYEFGETQTFLTTKTIIQRAKVLQILRPAIPTPA 221

Query: 184 DSDERVLVGS----------------------------------------TATLELTPMQ 203
             +                                                  L L   Q
Sbjct: 222 TPEGEAAPAQGEALPTQSSSLPQVDASGQPITSSQLENATPGSTLTQSIWVVMLALNDQQ 281

Query: 204 AKALVAA-QSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
            + L  A QS A++ L LRS  D+    +    +  +  E
Sbjct: 282 IELLEFALQSNARIVLALRSSDDVAIEQTSGITIDLLVRE 321


>gi|332162953|ref|YP_004299530.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318604224|emb|CBY25722.1| flp pilus assembly protein RcpC/CpaB [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667183|gb|ADZ43827.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862296|emb|CBX72457.1| hypothetical protein YEW_HH31890 [Yersinia enterocolitica W22703]
          Length = 277

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 56/169 (33%), Gaps = 6/169 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ + +  V   + GI+        + Q    +       I + IS  DL  G +
Sbjct: 1   MNRKFILLLSLLIVAVGIVGILINTDNDQKNTQDSTELNREQDTNIALAISTHDLPSGTI 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T N         +   +         ++  +++  L++  +L G  +  + L    +  
Sbjct: 61  LTENDYAIKKLLLKESNELV---KSNISSSADINRHLLKENVLAGSYLTKDMLATPDSDE 117

Query: 121 L-SSLLPKGKRAATMDISISS-AVGGMIKPNDHVDV-VMVRSLSERKPT 166
               +L KG      ++      +   +   D +   ++     +RK  
Sbjct: 118 FNHLVLKKGNVIYKFNLKKKDEYLLDSLNTGDRLSFQLITLETDKRKGM 166


>gi|238790279|ref|ZP_04634053.1| hypothetical protein yfred0001_31080 [Yersinia frederiksenii ATCC
           33641]
 gi|238721629|gb|EEQ13295.1| hypothetical protein yfred0001_31080 [Yersinia frederiksenii ATCC
           33641]
          Length = 288

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 11/176 (6%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSP---HHVQTEEVITENPAKFINV--LISKGDLAVGMVV 61
           M + V  +     GI                 +   +   + ++V   I+K  L  G ++
Sbjct: 1   MAMAVLLILVGGLGIFIFSGNKNDGLSENTGTQTEKKPAIEQVSVNFTIAKVGLKAGSII 60

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120
           T   ++        +  G      Q      + G +  V I     IR  ++        
Sbjct: 61  TEQDIKIETV---LLEPGHWLVEEQDAGQLFMVGYVTLVDINANSRIRTSQIAMPGSPAY 117

Query: 121 LSSLLPKGKRAATMDISISS-AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
           LS ++  G      ++S    +     K  +++D+    ++         +L  + 
Sbjct: 118 LSQMVTPGYHVYAFNLSEQQISQLAATKAGEYIDIYFRYNMIISGYKTQ-ILQRVE 172


>gi|227496332|ref|ZP_03926623.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
 gi|226834133|gb|EEH66516.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
          Length = 219

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 74/216 (34%), Gaps = 30/216 (13%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           +V G+    A ++ + L+ P            P +   V+++   +  G V+    L   
Sbjct: 27  LVVGLCVGAAALVTLTLLRPG-----------PGEVAQVIVTTRQVVAGEVLQDADLARR 75

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
             P   +    + D        E+ G    V + +G  +         +  L+S L   +
Sbjct: 76  ELPVAALPRTGLAD-------GEVVGTRAAVTLEEGTVLTTSM----TSQSLTSDLLPHE 124

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSNIRVIAIDHNIDSD 186
           R   + + +      + +P   VD+V     +          V+    RV+   H  +SD
Sbjct: 125 RVVQVPVEV---GAELARPGAVVDLVAEAPQAGDGAGAEVPTVICDGARVLLTQHEGNSD 181

Query: 187 ERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVL 220
                 +    TL +    A  +V A +   L +VL
Sbjct: 182 RWSSGATVPLITLAVPASTASLVVGAATHGALGIVL 217


>gi|183984494|ref|YP_001852785.1| hypothetical protein MMAR_4524 [Mycobacterium marinum M]
 gi|183177820|gb|ACC42930.1| conserved hypothetical membrane protein [Mycobacterium marinum M]
          Length = 219

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                    V+++  DL+ G  +T   +         + DG   DV        L G  +
Sbjct: 47  PSPDTNLSEVVVAARDLSPGTPLTTADVRLEMRSAATLPDGSQTDV------GALVGATL 100

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
             P  +G+ +   +++       ++    G R   + ++  SA+  +I+  D VDV+   
Sbjct: 101 ASPTRRGEVLTDVRILGSRLAESTA--GPGARVVPLHLAD-SALIDLIRVGDVVDVLAAP 157

Query: 159 SLSE-RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
             ++   P   VV ++  V+ +  +   + +        + L    A  +  +     L+
Sbjct: 158 PTTQPSPPAAKVVATDAVVVLV--SAKQELQTHADRVVLVALPARLANMVAGSALGQTLT 215

Query: 218 LVL 220
           L L
Sbjct: 216 LTL 218


>gi|258654757|ref|YP_003203913.1| SAF domain-containing protein [Nakamurella multipartita DSM 44233]
 gi|258557982|gb|ACV80924.1| SAF domain protein [Nakamurella multipartita DSM 44233]
          Length = 219

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 20/173 (11%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
             VL+   DL +G V+    +   A       DG + D         + G ++     +G
Sbjct: 64  TPVLVLTRDLPIGAVLLATDVTTTAVLRP--PDGALTDPGP------VAGRVLSGAARRG 115

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           + +   +LVD     +      G+ A  +  + ++ +  +++P  HV VV V        
Sbjct: 116 EVLTDVRLVDP----IGPAPGPGRVAVPIRPADATVI-DLLRPGMHVAVVAVDDAGG--- 167

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
             T ++++  V+ +       +         L +    A  +VAA     L+L
Sbjct: 168 -ATALVADAVVLLVGDATARRDEQAP---VVLAVPQDSADQVVAAALTGTLAL 216


>gi|260204206|ref|ZP_05771697.1| hypothetical protein MtubK8_07852 [Mycobacterium tuberculosis K85]
 gi|289573628|ref|ZP_06453855.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289538059|gb|EFD42637.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 218

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 61/189 (32%), Gaps = 11/189 (5%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
                + +        V+++  DL  G V+TP  +         + DG   D      + 
Sbjct: 40  AGVAALRSNPEDDRAEVVVAAHDLRPGTVLTPGDVRLEKRSATTLPDGSQAD------LD 93

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
            + G  +  P  +G+ +   +L+       ++      R   + ++ S+ V  +++  D 
Sbjct: 94  AVVGSTLASPTRRGEVLTDVRLLGSRLAESTA--GPDARIVPLHLADSALV-DLVRVGDV 150

Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
           VDV+             +    I V+         +         + L    A  +  A 
Sbjct: 151 VDVLAAPVTDSPAALRLLATDAIVVLVSAQQ--KAQAADSDRVVLVALPARLANTVAGAA 208

Query: 212 SVAKLSLVL 220
               ++L L
Sbjct: 209 LGQTVTLTL 217


>gi|77454606|ref|YP_345474.1| hypothetical protein pREL1_0039 [Rhodococcus erythropolis PR4]
 gi|77019606|dbj|BAE45982.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 234

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 67/218 (30%), Gaps = 28/218 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R + + +     +VA I  +  VS                  +VL+   D+  G ++ 
Sbjct: 40  RRRPIYLAIGVALVVVAVIGMLAAVSAMRA------------TTDVLVLARDVQQGQIIE 87

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L       +                  + G+     +  G  +    + D+   G  
Sbjct: 88  SKDLTVKTVNVD-----ADLGALSAGERGRVIGMSAGTRLPAGTVLMPAAVTDQVVPG-- 140

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
               +G     + +         I P D + VV      +  P    + +  +V +    
Sbjct: 141 ----EGLTMVGITVGYPHLPSEAILPGDMIRVVDTPREGDDPPVTGPINTKAQVYSTTTI 196

Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            ++ E     +T  L +   +A  + A  +  ++S+VL
Sbjct: 197 AEAGE-----TTLNLLVPEAEANWVAARAATKRVSIVL 229


>gi|187251719|ref|YP_001876201.1| SAF domain-containing protein [Elusimicrobium minutum Pei191]
 gi|186971879|gb|ACC98864.1| SAF domain protein [Elusimicrobium minutum Pei191]
          Length = 207

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 73/218 (33%), Gaps = 35/218 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M       +V+S +  + A +                   +  K +N+ ++  D+  G V
Sbjct: 14  MSPKVFAFLVMSVILIMFAVLFIF----------AHKKRMHETKHVNIFVAAEDINKGTV 63

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T  +L  V         G          +Q L G    V I++G  +    +       
Sbjct: 64  ITQRLLSPVKMIAHE--PGAFLVGD----IQLLLGSYALVDIVQGSQMTKHIITAEP--- 114

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           + +    G R  ++ +   +      K +  +++        R  T+     NIR++++ 
Sbjct: 115 VITAPDIGYRLYSLVLPYQAVPRDHTKTD--INIY-------RGETLINSFKNIRIVSMK 165

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
              +        +   LE+ P  A+ L   ++   L +
Sbjct: 166 SVPEE-------TAFVLEVDPQTAQELFFVENSKALHV 196


>gi|15608130|ref|NP_215505.1| hypothetical protein Rv0990c [Mycobacterium tuberculosis H37Rv]
 gi|15840415|ref|NP_335452.1| hypothetical protein MT1019 [Mycobacterium tuberculosis CDC1551]
 gi|148660771|ref|YP_001282294.1| hypothetical protein MRA_0997 [Mycobacterium tuberculosis H37Ra]
 gi|167968056|ref|ZP_02550333.1| hypothetical protein MtubH3_08483 [Mycobacterium tuberculosis
           H37Ra]
 gi|254231287|ref|ZP_04924614.1| hypothetical protein TBCG_00979 [Mycobacterium tuberculosis C]
 gi|254363908|ref|ZP_04979954.1| hypothetical protein TBHG_00974 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|306775124|ref|ZP_07413461.1| hypothetical protein TMAG_00929 [Mycobacterium tuberculosis
           SUMu001]
 gi|306781961|ref|ZP_07420298.1| hypothetical protein TMBG_01621 [Mycobacterium tuberculosis
           SUMu002]
 gi|306783684|ref|ZP_07422006.1| hypothetical protein TMCG_00603 [Mycobacterium tuberculosis
           SUMu003]
 gi|306788039|ref|ZP_07426361.1| hypothetical protein TMDG_03597 [Mycobacterium tuberculosis
           SUMu004]
 gi|306792372|ref|ZP_07430674.1| hypothetical protein TMEG_00874 [Mycobacterium tuberculosis
           SUMu005]
 gi|306796774|ref|ZP_07435076.1| hypothetical protein TMFG_02809 [Mycobacterium tuberculosis
           SUMu006]
 gi|306802661|ref|ZP_07439329.1| hypothetical protein TMHG_00166 [Mycobacterium tuberculosis
           SUMu008]
 gi|306806841|ref|ZP_07443509.1| hypothetical protein TMGG_03063 [Mycobacterium tuberculosis
           SUMu007]
 gi|306967040|ref|ZP_07479701.1| hypothetical protein TMIG_03552 [Mycobacterium tuberculosis
           SUMu009]
 gi|306971230|ref|ZP_07483891.1| hypothetical protein TMJG_02659 [Mycobacterium tuberculosis
           SUMu010]
 gi|307078960|ref|ZP_07488130.1| hypothetical protein TMKG_01481 [Mycobacterium tuberculosis
           SUMu011]
 gi|307083518|ref|ZP_07492631.1| hypothetical protein TMLG_01695 [Mycobacterium tuberculosis
           SUMu012]
 gi|2052124|emb|CAB08150.1| HYPOTHETICAL PROTEIN Rv0990c [Mycobacterium tuberculosis H37Rv]
 gi|13880585|gb|AAK45266.1| hypothetical protein MT1019 [Mycobacterium tuberculosis CDC1551]
 gi|124600346|gb|EAY59356.1| hypothetical protein TBCG_00979 [Mycobacterium tuberculosis C]
 gi|134149422|gb|EBA41467.1| hypothetical protein TBHG_00974 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148504923|gb|ABQ72732.1| hypothetical protein MRA_0997 [Mycobacterium tuberculosis H37Ra]
 gi|308216331|gb|EFO75730.1| hypothetical protein TMAG_00929 [Mycobacterium tuberculosis
           SUMu001]
 gi|308325350|gb|EFP14201.1| hypothetical protein TMBG_01621 [Mycobacterium tuberculosis
           SUMu002]
 gi|308331529|gb|EFP20380.1| hypothetical protein TMCG_00603 [Mycobacterium tuberculosis
           SUMu003]
 gi|308335333|gb|EFP24184.1| hypothetical protein TMDG_03597 [Mycobacterium tuberculosis
           SUMu004]
 gi|308339140|gb|EFP27991.1| hypothetical protein TMEG_00874 [Mycobacterium tuberculosis
           SUMu005]
 gi|308342811|gb|EFP31662.1| hypothetical protein TMFG_02809 [Mycobacterium tuberculosis
           SUMu006]
 gi|308346664|gb|EFP35515.1| hypothetical protein TMGG_03063 [Mycobacterium tuberculosis
           SUMu007]
 gi|308350579|gb|EFP39430.1| hypothetical protein TMHG_00166 [Mycobacterium tuberculosis
           SUMu008]
 gi|308355270|gb|EFP44121.1| hypothetical protein TMIG_03552 [Mycobacterium tuberculosis
           SUMu009]
 gi|308359224|gb|EFP48075.1| hypothetical protein TMJG_02659 [Mycobacterium tuberculosis
           SUMu010]
 gi|308363136|gb|EFP51987.1| hypothetical protein TMKG_01481 [Mycobacterium tuberculosis
           SUMu011]
 gi|308366793|gb|EFP55644.1| hypothetical protein TMLG_01695 [Mycobacterium tuberculosis
           SUMu012]
 gi|323720557|gb|EGB29638.1| hypothetical protein TMMG_02985 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 218

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 11/189 (5%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
                + +        V+++  DL  G  +TP  +         + DG   D      + 
Sbjct: 40  AGVAALRSNPEDDRSEVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQAD------LD 93

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
            + G  +  P  +G+ +   +L+       ++      R   + ++ S+ V  +++  D 
Sbjct: 94  AVVGSTLASPTRRGEVLTDVRLLGSRLAESTA--GPDARIVPLHLADSALV-DLVRVGDV 150

Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
           VDV+             +    I V+         +         + L    A  +  A 
Sbjct: 151 VDVLAAPVTDSPAALRLLATDAIVVLVSAQQ--KAQAADSDRVVLVALPARLANTVAGAA 208

Query: 212 SVAKLSLVL 220
               ++L L
Sbjct: 209 LGQTVTLTL 217


>gi|307249760|ref|ZP_07531738.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858175|gb|EFM90253.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 268

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 60/199 (30%), Gaps = 18/199 (9%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT--------ENPAKFINVLISKGDLAV 57
           L+ I +  +     G+  +      + +     T            K I  +    DL  
Sbjct: 2   LLIISLVIIVLGFGGLFMLPNNEGTNTENVSTTTSSEESSNSPVTEKVITTVTLNRDLEK 61

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIRLEKLV 114
           G ++ P                   D+      +    L G LV   +  G  +    ++
Sbjct: 62  GTLIQPEDYTLSELTVAETSPLVDSDLKALLDAEPNHSLQGFLVTENLKMGSLLTPNLII 121

Query: 115 DRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL----SERKPTV 167
              +    L SL P  + A  + +      +   ++  D V V  V+         + ++
Sbjct: 122 TPEDPRFILLSLDPSQEVAYRIYVQDAEQYILDSVRGGDLVSVYSVQQDLAHPEREQNSL 181

Query: 168 TVVLSNIRVIAIDHNIDSD 186
             +  N++V+ +      +
Sbjct: 182 VKIADNLKVLQVKSFTQEE 200


>gi|312138618|ref|YP_004005954.1| hypothetical protein REQ_11700 [Rhodococcus equi 103S]
 gi|311887957|emb|CBH47269.1| hypothetical protein REQ_11700 [Rhodococcus equi 103S]
          Length = 206

 Score = 62.1 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL++  DL  G V+TP+ +  VA P+ ++ +G +  V       +  G  V  P+  G+
Sbjct: 38  PVLVAAHDLTPGTVLTPDDVRVVARPDPDLPEGSVRVVA------DASGRTVASPVRAGE 91

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +   +L+       ++      R   + ++    +  +I+  D VDV+ V    +    
Sbjct: 92  MLTDVRLLGPRLTEAAAG-APDARMVPVRLTDP-GLSELIRAGDRVDVLTV---DQTSGP 146

Query: 167 VTVVLSNIRVIAIDHNI 183
                    V+A D  +
Sbjct: 147 TETRRPAATVLATDATV 163


>gi|31792181|ref|NP_854674.1| hypothetical protein Mb1017c [Mycobacterium bovis AF2122/97]
 gi|121636917|ref|YP_977140.1| hypothetical protein BCG_1045c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|215402806|ref|ZP_03414987.1| hypothetical protein Mtub0_03760 [Mycobacterium tuberculosis
           02_1987]
 gi|215410589|ref|ZP_03419397.1| hypothetical protein Mtub9_04524 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426268|ref|ZP_03424187.1| hypothetical protein MtubT9_07731 [Mycobacterium tuberculosis T92]
 gi|215445138|ref|ZP_03431890.1| hypothetical protein MtubT_04052 [Mycobacterium tuberculosis T85]
 gi|224989389|ref|YP_002644076.1| hypothetical protein JTY_1017 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260185899|ref|ZP_05763373.1| hypothetical protein MtubCP_07697 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200017|ref|ZP_05767508.1| hypothetical protein MtubT4_07787 [Mycobacterium tuberculosis T46]
 gi|289442410|ref|ZP_06432154.1| hypothetical protein TBLG_03153 [Mycobacterium tuberculosis T46]
 gi|289446571|ref|ZP_06436315.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289744726|ref|ZP_06504104.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289749518|ref|ZP_06508896.1| hypothetical protein TBDG_01743 [Mycobacterium tuberculosis T92]
 gi|289757073|ref|ZP_06516451.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294995178|ref|ZP_06800869.1| hypothetical protein Mtub2_11847 [Mycobacterium tuberculosis 210]
 gi|298524484|ref|ZP_07011893.1| hypothetical protein TBAG_03051 [Mycobacterium tuberculosis
           94_M4241A]
 gi|31617769|emb|CAD93878.1| HYPOTHETICAL PROTEIN Mb1017c [Mycobacterium bovis AF2122/97]
 gi|121492564|emb|CAL71032.1| Hypothetical protein BCG_1045c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224772502|dbj|BAH25308.1| hypothetical protein JTY_1017 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289415329|gb|EFD12569.1| hypothetical protein TBLG_03153 [Mycobacterium tuberculosis T46]
 gi|289419529|gb|EFD16730.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289685254|gb|EFD52742.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289690105|gb|EFD57534.1| hypothetical protein TBDG_01743 [Mycobacterium tuberculosis T92]
 gi|289712637|gb|EFD76649.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494278|gb|EFI29572.1| hypothetical protein TBAG_03051 [Mycobacterium tuberculosis
           94_M4241A]
 gi|326904784|gb|EGE51717.1| hypothetical protein TBPG_02700 [Mycobacterium tuberculosis W-148]
          Length = 218

 Score = 62.1 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 11/189 (5%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
                + +        V+++  DL  G  +TP  +         + DG   D      + 
Sbjct: 40  AGVAALRSNPEDDRAEVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQAD------LD 93

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
            + G  +  P  +G+ +   +L+       ++      R   + ++ S+ V  +++  D 
Sbjct: 94  AVVGSTLASPTRRGEVLTDVRLLGSRLAESTA--GPDARIVPLHLADSALV-DLVRVGDV 150

Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
           VDV+             +    I V+         +         + L    A  +  A 
Sbjct: 151 VDVLAAPVTDSPAALRLLATDAIVVLVSAQQ--KAQAADSDRVVLVALPARLANTVAGAA 208

Query: 212 SVAKLSLVL 220
               ++L L
Sbjct: 209 LGQTVTLTL 217


>gi|215429850|ref|ZP_03427769.1| hypothetical protein MtubE_04012 [Mycobacterium tuberculosis
           EAS054]
 gi|289753048|ref|ZP_06512426.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289693635|gb|EFD61064.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
          Length = 218

 Score = 62.1 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 11/189 (5%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
                + +        V+++  DL  G  +TP  +         + DG   D      + 
Sbjct: 40  AGVAALRSNPEDDRAEVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQAD------LD 93

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
            + G  +  P  +G+ +   +L+       ++      R   + ++ S+ V  +++  D 
Sbjct: 94  AVVGSTLASPTRRGEVLTDVRLLGSRLAESTA--GPDARIVPLHLADSALV-DLVRVGDV 150

Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
           VDV+             +    I V+         +         + L    A  +  A 
Sbjct: 151 VDVLAAPVTDSPAALRLLATDAIVVLVSAQQ--KAQAADSDRVVLVALPARLANTVAGAA 208

Query: 212 SVAKLSLVL 220
               ++L L
Sbjct: 209 LGQTVTLTL 217


>gi|148822199|ref|YP_001286953.1| hypothetical protein TBFG_11008 [Mycobacterium tuberculosis F11]
 gi|218752660|ref|ZP_03531456.1| hypothetical protein MtubG1_04075 [Mycobacterium tuberculosis GM
           1503]
 gi|253799982|ref|YP_003032983.1| hypothetical protein TBMG_02999 [Mycobacterium tuberculosis KZN
           1435]
 gi|254549974|ref|ZP_05140421.1| hypothetical protein Mtube_05853 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289555228|ref|ZP_06444438.1| hypothetical protein TBXG_02978 [Mycobacterium tuberculosis KZN
           605]
 gi|289761124|ref|ZP_06520502.1| hypothetical protein TBIG_02544 [Mycobacterium tuberculosis GM
           1503]
 gi|297633515|ref|ZP_06951295.1| hypothetical protein MtubK4_05303 [Mycobacterium tuberculosis KZN
           4207]
 gi|297730500|ref|ZP_06959618.1| hypothetical protein MtubKR_05383 [Mycobacterium tuberculosis KZN
           R506]
 gi|313657829|ref|ZP_07814709.1| hypothetical protein MtubKV_05383 [Mycobacterium tuberculosis KZN
           V2475]
 gi|148720726|gb|ABR05351.1| hypothetical protein TBFG_11008 [Mycobacterium tuberculosis F11]
 gi|253321485|gb|ACT26088.1| hypothetical protein TBMG_02999 [Mycobacterium tuberculosis KZN
           1435]
 gi|289439860|gb|EFD22353.1| hypothetical protein TBXG_02978 [Mycobacterium tuberculosis KZN
           605]
 gi|289708630|gb|EFD72646.1| hypothetical protein TBIG_02544 [Mycobacterium tuberculosis GM
           1503]
 gi|328459724|gb|AEB05147.1| hypothetical protein TBSG_03018 [Mycobacterium tuberculosis KZN
           4207]
          Length = 218

 Score = 62.1 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 11/189 (5%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
                + +        V+++  DL  G  +TP  +         + DG   D      + 
Sbjct: 40  AGVAALRSNPEDDRSEVVVAAQDLRPGTALTPGDVRLEKRSATTLPDGSQAD------LD 93

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
            + G  +  P  +G+ +   +L+       ++      R   + ++ S+ V  +++  D 
Sbjct: 94  AVVGSTLASPTRRGEVLTDVRLLGSRLAESTA--GPDARIVPLHLADSALV-DLVRVGDV 150

Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
           VDV+             +    I V+         +         + L    A  +  A 
Sbjct: 151 VDVLAAPVTDSPAALRLLATDAIVVLVSAQQ--KAQAADSDRVVLVALPARLANTVAGAA 208

Query: 212 SVAKLSLVL 220
               ++L L
Sbjct: 209 LGQTVTLTL 217


>gi|213966094|ref|ZP_03394282.1| SAF domain protein [Corynebacterium amycolatum SK46]
 gi|213951292|gb|EEB62686.1| SAF domain protein [Corynebacterium amycolatum SK46]
          Length = 205

 Score = 62.1 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 33/219 (15%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           + T +  IV   VF    G+ A+  ++P                  V+IS   +A G  V
Sbjct: 17  RPTTIRRIVALTVFLCAVGLAAVESLTPRSG------------HTRVVISAKSIAAGASV 64

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               + +   P + V  G + D+        + G  +   +  G+    +++V       
Sbjct: 65  AEQDVAFKDIPRDLVPGGAVTDIA------AVRGRTLATGMSPGEIFTEQRMVGPSLAKS 118

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
            +   + K    + ++ S  V   +   D VD+V      + +     +    RV+ I  
Sbjct: 119 LTGTSESK-IIAITLTDSGIVSA-LHTGDSVDIVSTA---DERGMAAPIAHGARVVNI-- 171

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                   +      + L    A+ + A    + L+L+L
Sbjct: 172 --------VDDEVVLVALPAGAAEVVAATSLASPLTLLL 202


>gi|255325459|ref|ZP_05366563.1| SAF domain protein [Corynebacterium tuberculostearicum SK141]
 gi|255297545|gb|EET76858.1| SAF domain protein [Corynebacterium tuberculostearicum SK141]
          Length = 230

 Score = 61.7 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 65/212 (30%), Gaps = 13/212 (6%)

Query: 19  AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
             ++   +     +           +   V +   DL  G  +    ++    P  ++ D
Sbjct: 16  GVVVRRAIAVALLIAALASALSAAKELPRVPVFSRDLPAGAELALADVDLARLPSSSIPD 75

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS- 137
             +         +EL G ++     KG+ I   +L+            +   A  + +  
Sbjct: 76  SAV-----AAKPEELTGRVITAAAGKGEVITDARLLGEELVSSLVGGSEAAAARMIPVKL 130

Query: 138 ISSAVGGMIKPNDHVDVV----MVRSLSERKPTVTVVLSNIRVIAID---HNIDSDERVL 190
               +   +   D VDVV       S S+            RVIA      +  S E   
Sbjct: 131 AEPDIIPHLHHGDTVDVVTAVDAASSPSDVGEGEAPTAPTARVIATGGRVVSTSSAEGEA 190

Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
             ST  L L    A  + AA     L++V+  
Sbjct: 191 SSSTVLLALPHDHANDVAAASLSQPLTVVIVG 222


>gi|119715033|ref|YP_921998.1| SAF domain-containing protein [Nocardioides sp. JS614]
 gi|119535694|gb|ABL80311.1| SAF domain [Nocardioides sp. JS614]
          Length = 211

 Score = 61.7 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 15/170 (8%)

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +  DL  G V+ P  L  V F  ++V  G  DD        +  G  +  P+  G+P+  
Sbjct: 53  AARDLTAGTVLAPGDLRAVGFAPDSVPAGASDDAI------DAVGRTLAAPLRAGEPVTD 106

Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV 170
            ++V             G  A  + +  +  V  +++  D VD+V       +    +VV
Sbjct: 107 VRVVGPALTDGY----PGLTAVPVRLPDAGMV-DLLRVGDRVDLVAA---DPQGGGASVV 158

Query: 171 LSNIRVIAI-DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
            +++ V+A+     D     L G    +   P     +  A     L++ 
Sbjct: 159 ATDVPVLAVPAAGPDVGATGLPGRLVVVGAEPADVARIADASVRTFLTIA 208


>gi|148655421|ref|YP_001275626.1| SAF domain-containing protein [Roseiflexus sp. RS-1]
 gi|148567531|gb|ABQ89676.1| SAF domain [Roseiflexus sp. RS-1]
          Length = 338

 Score = 61.3 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 78/276 (28%), Gaps = 71/276 (25%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI--LEWVAFPEENVFDGFIDDVHQ 86
           P  V         P     V+ ++ D+    V+T     L     PE    +        
Sbjct: 30  PTPVPEALPQEPTPVPLRKVVAARVDIPANTVLTDTETFLTLRDIPE---PEYNAAPDQY 86

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP-------KGKRAATMDISIS 139
             ++ EL   +    +   + IR   L      GLS  +P          +   +++   
Sbjct: 87  FTSVNELTTKVTLRALNATEIIRARDLT---EAGLSFQVPLPDSPDTPRDKVFPLEVGNL 143

Query: 140 SAVGGMIKPNDHVDVVMVR-------------------------SLSERKPTVTVVLSNI 174
           + V   I+P D VD+VM                             +        ++ N+
Sbjct: 144 TGVADQIRPGDAVDLVMTYEIRRLIIRPSLTLDPETGQLVVTPLEETLVDRVTKTMVQNV 203

Query: 175 RVI-----AIDHNIDSDERVLVGSTAT----------------------LELTPMQAKAL 207
           RV+     AI     +        TA                       L +T  +A+ +
Sbjct: 204 RVLRVLKPAIPQEAGTPTPAGQQGTAPPPPPSSTQTPDTFVPGAQWILLLAMTDQEAEIV 263

Query: 208 --VAAQS--VAKLSLVLRSIADLNPSSSEDSDVWDV 239
                Q     +++LVLR   D     +    +  +
Sbjct: 264 KFTLDQQDPKPQITLVLRGRDDSAIEDTTGITLRLL 299


>gi|218670668|ref|ZP_03520339.1| Flp pilus assembly protein CpaB [Rhizobium etli GR56]
          Length = 133

 Score = 61.3 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 2/105 (1%)

Query: 42  PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101
            A+   ++++   +  G  +    L  + +P      G    +       E         
Sbjct: 19  KAEERTLVVAAKPMRFGDRIRSENLRAIPWPSNETPAGSFVSIEAVVG-NEAQPRYAMAA 77

Query: 102 ILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGM 145
           I  G+P+   K+   G    LS+ L +G +A ++ ++    V  +
Sbjct: 78  IDPGEPVLSSKITGTGERATLSAALDQGMKAVSIRVNDVLGVARL 122


>gi|146351302|ref|YP_001210529.1| hypothetical protein pAL1.082 [Arthrobacter nitroguajacolicus]
 gi|146218866|emb|CAL09937.1| putative membrane protein [Arthrobacter nitroguajacolicus]
          Length = 238

 Score = 61.3 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 16/175 (9%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           I V  +  D+  G +V  + L  V  P               +   ++ G    V I +G
Sbjct: 75  ITVFSASKDITRGAIVQASDLTTVQIPANQPIP-----ALSASNASDVIGKTAAVDIPQG 129

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
                  L+ + N    + L  G     + ++ +      +K  D V +V         P
Sbjct: 130 T------LLSQNNTTSDTGLQAGNSIVGISLTSAQLPPYPLKAGDQVRIVDTPINQGEPP 183

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
             T       VI         + V   +T  +E+   +A  L A  +  +++L+L
Sbjct: 184 KETPNSIKATVI-----TSKTDSVSGKTTVAVEVLEAKAPDLAARAATGRVALIL 233


>gi|83589197|ref|YP_429206.1| hypothetical protein Moth_0329 [Moorella thermoacetica ATCC 39073]
 gi|83572111|gb|ABC18663.1| hypothetical protein Moth_0329 [Moorella thermoacetica ATCC 39073]
          Length = 212

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 70/232 (30%), Gaps = 39/232 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M     + I +       A I+A                    K + V+ +   +  G  
Sbjct: 1   MSRKVGIVISLILALIFTAAILAAG----------NGKYRQATKTVEVVKAVRFIPAGER 50

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + +  V  PE                 ++L+G   +V +LK   +  +       G 
Sbjct: 51  ITADSITTVRVPESMASGLA-------TNPKDLEGKEAKVSLLKDQFVWKD-----AAGE 98

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--ERKPTVTVVLSNI---R 175
           L++    G     + +    A  G + P + V++ +    +          +  N+   +
Sbjct: 99  LAA--GPGMVEVVLPVD--LAASGAVWPGERVNIHIAVKNNNPGSSAPSPKICENVLVTK 154

Query: 176 VIAIDHNIDSDERV--------LVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           V+  D       +          V     +E+       LV A +   + LV
Sbjct: 155 VLGQDGVEIEPGKTTGLNPTTNKVPVAVGVEVPKDVEDVLVQAAANKTVYLV 206


>gi|302530357|ref|ZP_07282699.1| predicted protein [Streptomyces sp. AA4]
 gi|302439252|gb|EFL11068.1| predicted protein [Streptomyces sp. AA4]
          Length = 216

 Score = 60.9 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 11/186 (5%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
             +   A   + ++S  DL  G V+    +  VA P+     G +      +A+    G 
Sbjct: 41  PPSARGAPATSTVVSARDLPAGSVLRAADVRTVALPDSLRPSGAL------SAIDAAVGR 94

Query: 97  LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           L+      G+PI   +L+      L            + ++ + AV  +++P   VDVV 
Sbjct: 95  LLSGAARAGEPITDVRLLGNN---LPVTGEPDAVTVAVRLADA-AVAELLQPGQRVDVVA 150

Query: 157 VRSLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAK 215
               +     +    S + V   D   +        G    L L    A  + A+     
Sbjct: 151 GADTTNSASVLARGASVVTVRRSDDAGNRTLGPPQKGPLVLLALPREVATQVAASSLERP 210

Query: 216 LSLVLR 221
           +++ LR
Sbjct: 211 VTVTLR 216


>gi|325518464|gb|EGC98163.1| Flp pilus assembly protein CpaB [Burkholderia sp. TJI49]
          Length = 178

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 18/119 (15%)

Query: 146 IKPNDHVDVVMVRSLSER--------KPTVTVVLSNIRVIAIDHNIDSDER--------- 188
           ++P + VDV +               +    +++S +RV++        +          
Sbjct: 1   MRPGNFVDVFLNLKREGNSMLDGEVSQTQARLLMSRVRVLSFGDATPDRDSGNNTNGSNG 60

Query: 189 -VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI 246
                  A L +   Q  AL   +S  +L+L LR+  D   +    +   D +     +
Sbjct: 61  QPSGVRIAVLAVPTAQVDALTLGESSGRLTLALRNPRDDELAVQTVAVRTDNKLSPSAL 119


>gi|262201376|ref|YP_003272584.1| SAF domain-containing protein [Gordonia bronchialis DSM 43247]
 gi|262084723|gb|ACY20691.1| SAF domain protein [Gordonia bronchialis DSM 43247]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 18/183 (9%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           +       VL++  +L  G  +T   +  V  P   + DG +          E  G  V 
Sbjct: 53  QRTTGEQPVLVAVHELRPGQPLTAEDVTVVRVPSSLMPDGALVSPA------EGLGRTVA 106

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
             +  G+ +   +L+        + L    R   + ++  +    +++  D VDV+    
Sbjct: 107 GRVRVGELVTDARLLTAHLPADLTGL-DDARLVPVHLADETLTS-LLRSGDVVDVL---- 160

Query: 160 LSERKPTVTVVLSNIRVI--AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
                P   V+     V   A D                L +    A  + AA   A L+
Sbjct: 161 ----SPEAEVLARGAVVALPAGDAGSGGLTARSATRPVLLAMAEASAHRVAAAGLDAPLA 216

Query: 218 LVL 220
           +VL
Sbjct: 217 VVL 219


>gi|310288050|ref|YP_003939309.1| hypothetical protein BBIF_1530 [Bifidobacterium bifidum S17]
 gi|309251987|gb|ADO53735.1| conserved hypothetical protein [Bifidobacterium bifidum S17]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 28/191 (14%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                    V+++   +  G  +    +E    P  + +D  +      +A  +  G + 
Sbjct: 44  VTASIVTQPVVVAARLIPRGARIGAEDVEIRQMPVSDGWDTAL------DAANQAAGGIA 97

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-- 156
           +  I  G P+    +  R           G+    + +   +     I   D +D+V   
Sbjct: 98  QTDIAAGQPLFGAIVSRRPVA------EPGQTVIDVRV---TGTVDGIAAGDVMDLVSGT 148

Query: 157 --------VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208
                     S  E     + VL+     A   +   D+ +  G+  T  LTP +A +++
Sbjct: 149 PCDASTGTTSSRDESAGGRSCVLAR---SATAMDAAHDDAMTGGTLITFALTPDEAISII 205

Query: 209 AAQSVAKLSLV 219
            AQ +  +  V
Sbjct: 206 NAQELGPIMAV 216


>gi|118619767|ref|YP_908099.1| hypothetical protein MUL_4696 [Mycobacterium ulcerans Agy99]
 gi|118571877|gb|ABL06628.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
           Agy99]
          Length = 224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 17/188 (9%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                    V+++  DL+ G  +T   +         + DG   DV        L G  +
Sbjct: 47  PSPDTNLCEVVVAARDLSPGTPLTIADVRLETRSAATLPDGPQTDV------GALVGATL 100

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV--- 155
             P  +G+ +   +++       ++    G R   + ++  SA+  +I+  D VDV+   
Sbjct: 101 ASPTRRGEMLTDVRILGSRLAESTA--GPGARVVPLHLAD-SALIDLIRVGDVVDVLAAP 157

Query: 156 ---MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212
                 +     P   VV ++  V+ +  +   + +        + L    A  +  +  
Sbjct: 158 PTDAPAANQPSPPAAKVVATDAVVVLV--SAKQELQTHAHRVVLVALPARLANMVAGSAL 215

Query: 213 VAKLSLVL 220
              L+L L
Sbjct: 216 GQTLTLTL 223


>gi|307721766|ref|YP_003892906.1| SAF domain-containing protein [Sulfurimonas autotrophica DSM 16294]
 gi|306979859|gb|ADN09894.1| SAF domain protein [Sulfurimonas autotrophica DSM 16294]
          Length = 292

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 81/229 (35%), Gaps = 41/229 (17%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
               +MGI+   V    +  + + L    H +T +         I V ++  +L  G ++
Sbjct: 5   NTRIIMGIMAGLVLFSSSVALLLYLKQSKHKETAQNN-------IEVFVAAKNLKKGDLL 57

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGG 120
               ++    P+  +    + D        E+     RV I K +PIRLEK+   +    
Sbjct: 58  DAGSIKKAKLPKSYISFTPLTD-------SEIISHYARVNIYKDEPIRLEKISALKPVEK 110

Query: 121 LSSLLPKGKRAATMDISISSAVGG---------------MIKPNDHVDV--VMVRSLSER 163
           +   + K +      ++    V                 +++  D+VD+  V+  S    
Sbjct: 111 IKQTVKKSETKVQTTLNKVQQVTEDTLSVSLSVFKNKNTLLRGGDYVDIASVIPSSTKTD 170

Query: 164 KPTVTVVLSNIRV---------IAIDHNIDSDERVLVGSTATLELTPMQ 203
                 +  ++++         ++   + ++ ++++   T    ++P  
Sbjct: 171 NFNTRYIALHVKINNFVSNGKTLSTPISYNAKKQIIRADTIVFLMSPKD 219


>gi|239620983|ref|ZP_04664014.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239516084|gb|EEQ55951.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 208

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 54/181 (29%), Gaps = 18/181 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   ++++   +  G ++    ++    P                 ++++ G + ++
Sbjct: 46  AVVETEPMVVAARSIRRGDIILAADVQLADMPVSAA------GPSWTGNIEDVVGKVAQI 99

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            I   DPI             + + P G     + ++ S      +   D V +V     
Sbjct: 100 DIEAADPIS------THMARDAPVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGC 150

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                    +  N  V+ +     +          +  + P  A  ++  Q    +  V+
Sbjct: 151 EGADC---TLAENATVMNVGKPDTTGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 207

Query: 221 R 221
           R
Sbjct: 208 R 208


>gi|320532996|ref|ZP_08033744.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134787|gb|EFW26987.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 319

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 54/146 (36%), Gaps = 24/146 (16%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           +V  V    A ++A+ ++ P   + ++           VL++   ++ G ++T   +   
Sbjct: 58  LVVAVCLGTAVLVALSVLRPGPERGQQ-----------VLVASRAISAGALLTDQDVSTS 106

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
             P  ++    +       +  +  G    + + KG  +         +GG++  L   +
Sbjct: 107 TLPAGSLPQSPLT------STGQAVGSRAAISLEKGTVLTASM----TSGGMAQELGADE 156

Query: 130 RAATMDISISSAVGGMIKPNDHVDVV 155
           R   + +        + +P   VDV+
Sbjct: 157 RLVQVPVD---VGAELARPGARVDVI 179


>gi|311064926|ref|YP_003971652.1| hypothetical protein BBPR_1589 [Bifidobacterium bifidum PRL2010]
 gi|313140839|ref|ZP_07803032.1| cation transport ATPase [Bifidobacterium bifidum NCIMB 41171]
 gi|310867246|gb|ADP36615.1| Conserved hypothetical protein [Bifidobacterium bifidum PRL2010]
 gi|313133349|gb|EFR50966.1| cation transport ATPase [Bifidobacterium bifidum NCIMB 41171]
          Length = 219

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 28/191 (14%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                    V+++   +  G  +    +E    P  + +D  +      +A  +  G + 
Sbjct: 44  VTASIVTQPVVVAARLIPRGARIGAEDVEIRQMPVSDGWDTAL------DAANQAAGGIA 97

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-- 156
           +  I  G P+    +  R           G+    + +   +     I   D +D+V   
Sbjct: 98  QTDIAAGQPLFGAIVSRRPVA------EPGQTVIDVRV---TGTVDGIAAGDVMDLVSGT 148

Query: 157 --------VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208
                     S  E     + VL+     A   +   D+ +  G+  T  LTP +A +++
Sbjct: 149 PCDASAGTTSSRDESAGGRSCVLAR---SATAMDAAHDDAMTGGTLITFALTPDEAISII 205

Query: 209 AAQSVAKLSLV 219
            AQ +  +  V
Sbjct: 206 NAQELGPIMAV 216


>gi|300858083|ref|YP_003783066.1| hypothetical protein cpfrc_00665 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685537|gb|ADK28459.1| putative secreted protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302205806|gb|ADL10148.1| Putative secreted protein [Corynebacterium pseudotuberculosis C231]
 gi|302330365|gb|ADL20559.1| Conserved hypothetical protein [Corynebacterium pseudotuberculosis
           1002]
 gi|308276041|gb|ADO25940.1| Conserved hypothetical protein [Corynebacterium pseudotuberculosis
           I19]
          Length = 250

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 74/237 (31%), Gaps = 48/237 (20%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           + + L+  + + +  ++A +I MR              ++      V   + D+ +G V+
Sbjct: 14  RRSILLRRLFACLLCVLAAVITMR--------------QHHEPHTTVFQYRRDIHLGEVI 59

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQ-----------------------PNAMQELDGVLV 98
           T   L+  + P   + +  I                            P    +    + 
Sbjct: 60  TEKDLQAFSIPTHLLPNHAITQEEDIRFSYQRDNAHPHAAPSPSQKIFPLGTDKTTRRIA 119

Query: 99  RVPILKGDPIRLEKLVDRGNGG------LSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
                +G        +            +S    +      + ++  + +  ++ P D V
Sbjct: 120 ISARPRGSIAVKTDFLPPPQDITSVIKNISMDRGEELNLVPVRLAQPN-LSQLLHPGDRV 178

Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209
           D+V   S  +     +VV +   VI +     + +  +  S A +     +A+ + A
Sbjct: 179 DLVASESTPDS---SSVVAAGGLVIFVPDPSSNKQNNIDYS-ALIAFPKPEAQLVAA 231


>gi|228982964|ref|ZP_04143223.1| hypothetical protein bthur0002_60970 [Bacillus thuringiensis Bt407]
 gi|228777147|gb|EEM25455.1| hypothetical protein bthur0002_60970 [Bacillus thuringiensis Bt407]
          Length = 292

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 76/235 (32%), Gaps = 29/235 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
               L  +      A++        ++    +              + ++K D+     V
Sbjct: 19  NKKMLYAVGGLTTLAILMFGYQNFYLANQQEKV----------GTTIYVAKEDIQAKTEV 68

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             ++   V   +  +  G++ D+       ++ G  ++  +LKG+PI  ++L  +     
Sbjct: 69  NESMFTPVHIAKGGLLKGYVTDIS------QIKGAQLKGGLLKGEPIATQRLESKKENTD 122

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLS-NIRVIAID 180
             L         + I            N  V V++    SE+    T+  S  I V A  
Sbjct: 123 EKL--------KIKIQSEFMPDIKNADNVKVFVLLTNKHSEQSEVQTLFASKKIEVSAQA 174

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235
                  +        L+LT  + K    AQS  K+ +      D +  SSE   
Sbjct: 175 PEATQPSKQEYY----LQLTEDEVKQYYDAQSKGKIIISKMMSLDTSEISSEGGY 225


>gi|213693112|ref|YP_002323698.1| SAF domain protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|296454899|ref|YP_003662043.1| SAF domain-containing protein [Bifidobacterium longum subsp. longum
           JDM301]
 gi|213524573|gb|ACJ53320.1| SAF domain protein [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|296184331|gb|ADH01213.1| SAF domain protein [Bifidobacterium longum subsp. longum JDM301]
          Length = 208

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 57/181 (31%), Gaps = 18/181 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   ++++   +  G ++    ++  A P   +             ++++ G + ++
Sbjct: 46  AVVETEPMVVAARSIRRGDIILAVDVQLAAMPVSAI------GPSWAGNIEDVVGKVAQI 99

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            I   DPI             + + P G     + ++ S      +   D V +V     
Sbjct: 100 DIEAADPIS------THMARDAPVTPTGTTVIEVRLASSV---DDVLAGDRVRLVSAVGC 150

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                    +  N  V+ +     +    +     +  + P  A  ++  Q    +  V+
Sbjct: 151 EGADC---TLAENATVMNVGKPDTTGALGVNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 207

Query: 221 R 221
           R
Sbjct: 208 R 208


>gi|28493099|ref|NP_787260.1| hypothetical protein TWT132 [Tropheryma whipplei str. Twist]
 gi|28476139|gb|AAO44229.1| unknown [Tropheryma whipplei str. Twist]
          Length = 254

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 67/205 (32%), Gaps = 33/205 (16%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + I ++ + A   G+  +   +    Q              V ++   L++G        
Sbjct: 13  ILIGLALIAASFIGVFFVIKTNNSKSQ--------------VYVATRPLSIGDKFDAKQF 58

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
             V        D +I     PNA       +   PI+ G+ +    LV         +L 
Sbjct: 59  SIVEANLGANLDKYITPGSLPNA-------VFNRPIMPGEFLPKSALVP--------VLD 103

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRVIAIDHNIDS 185
           K   A  + I  +  + G +K  D VDV     + E       ++   +RV  +  +   
Sbjct: 104 KDIVAVVLRI--AGDLPGDVKEGDLVDVWAAVKIKEEGFWQSELIAKTLRVSRVIVSTSQ 161

Query: 186 DERVLVGSTATLELTPMQAKALVAA 210
            +     +   ++ +  +   L+ A
Sbjct: 162 FD-PRGTTKVEVQASRDRLSYLLNA 185


>gi|291457156|ref|ZP_06596546.1| putative flagella basal body P-ring formation protein FlgA
           [Bifidobacterium breve DSM 20213]
 gi|291380991|gb|EFE88509.1| putative flagella basal body P-ring formation protein FlgA
           [Bifidobacterium breve DSM 20213]
          Length = 188

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 71/208 (34%), Gaps = 28/208 (13%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
           + A  AG+  +  +     Q          +   V+I+   +A G +++   +     P 
Sbjct: 9   IAAFCAGLAVLFGLGTVLAQ---------VQTAPVVIADRPIARGEIISSADIRVELLPV 59

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAAT 133
             V   +  D        E+ G++ ++ I   DPI             + L P G     
Sbjct: 60  STVGSSYATDAD------EITGLIAQIDIAVNDPIS------THMARDAPLPPTGTTVIE 107

Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGS 193
           + ++   +    + P D+V +V     +       V+     V+AI    ++        
Sbjct: 108 VRLA---SNPDDLLPGDNVQLVSAVGCAGEDC---VLAEEALVMAIG-EAEASSLGSNER 160

Query: 194 TATLELTPMQAKALVAAQSVAKLSLVLR 221
             +  + P  A A++  Q    +  V+R
Sbjct: 161 QVSFAMKPHAAAAVMELQQAGAIVAVMR 188


>gi|326333348|ref|ZP_08199595.1| putative Flp pilus assembly protein CpaB [Nocardioidaceae bacterium
           Broad-1]
 gi|325948992|gb|EGD41085.1| putative Flp pilus assembly protein CpaB [Nocardioidaceae bacterium
           Broad-1]
          Length = 219

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 66/214 (30%), Gaps = 32/214 (14%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++A  L +            +P     + ++  DL VG V+T   L  +     +V    
Sbjct: 22  LLAFLLTASAVAIGFSATRPDPPDTSTMAVASRDLPVGTVLTAADLTDIETDPGSVPA-- 79

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
                  +  +   G  +  P+ +G+P+   +LV                A  + +  + 
Sbjct: 80  -------DLAEAPLGERLAAPLRQGEPVTDVRLVGPELTEG----HPDLVAVPVRLPDAE 128

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-------------- 186
            + G++   D VD+      +     VT    +  ++++    + +              
Sbjct: 129 -MAGLLHVGDTVDLYATDPATAETARVTT---DTLILSLPQATEPNRDDSSAQGKTEGFG 184

Query: 187 -ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                 G    + +     + + +A     L+  
Sbjct: 185 VTNTSAGRLVIVGVAASSVEDVTSAGVGGYLTFA 218


>gi|224283683|ref|ZP_03647005.1| hypothetical protein BbifN4_07627 [Bifidobacterium bifidum NCIMB
           41171]
          Length = 213

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 28/191 (14%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                    V+++   +  G  +    +E    P  + +D  +      +A  +  G + 
Sbjct: 38  VTASIVTQPVVVAARLIPRGARIGAEDVEIRQMPVSDGWDTAL------DAANQAAGGIA 91

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-- 156
           +  I  G P+    +  R           G+    + +   +     I   D +D+V   
Sbjct: 92  QTDIAAGQPLFGAIVSRRPVA------EPGQTVIDVRV---TGTVDGIAAGDVMDLVSGT 142

Query: 157 --------VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208
                     S  E     + VL+     A   +   D+ +  G+  T  LTP +A +++
Sbjct: 143 PCDASAGTTSSRDESAGGRSCVLAR---SATAMDAAHDDAMTGGTLITFALTPDEAISII 199

Query: 209 AAQSVAKLSLV 219
            AQ +  +  V
Sbjct: 200 NAQELGPIMAV 210


>gi|323343128|ref|ZP_08083359.1| hypothetical protein HMPREF0357_11540 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463192|gb|EFY08387.1| hypothetical protein HMPREF0357_11540 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 213

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 68/181 (37%), Gaps = 11/181 (6%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILK 104
            V     DL     +  + LE ++ PE+ + +  I +       + + G  V+    + K
Sbjct: 18  KVYRLNTDLTQREKIEDHHLEEISLPEKGINEFMIRN------KENVIGRYVKLGHTVYK 71

Query: 105 GDPIRLEKLVDRGNGG--LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
           G  +         +       LL   +   + + S+ +  G +++  D+V++ +     +
Sbjct: 72  GQIVDRRDFEHFDDARGKPLLLLEPEEVLMSAEASMVNTGGNVLRAGDYVNLSVKLREFD 131

Query: 163 RKPTVTVVLSNIRVIAI-DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
               +  +L  +RV+ + D +    E     S  +  +       +  A  +  LS+V+ 
Sbjct: 132 GGSRIMPLLKGVRVVNVRDRDGHEIEAGKQPSVFSFAIPQKIESIIHKAIEIGDLSVVIC 191

Query: 222 S 222
           +
Sbjct: 192 N 192


>gi|123443820|ref|YP_001007791.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090781|emb|CAL13663.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 277

 Score = 59.4 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 57/169 (33%), Gaps = 6/169 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ + +  V   + GI+        + Q    +       I + IS  DL+ G +
Sbjct: 1   MNRKFILLLSLLIVAVGIVGILINTDNGQKNTQDSTELNREQDTNIALAISTHDLSSGTI 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T N           V +         ++  E++  L++  +L G  I  + L    +  
Sbjct: 61  LTANDYAIKNI---LVKESSELVKSNISSSAEINRHLLKENVLAGSYITKDMLAIPDSDE 117

Query: 121 L-SSLLPKGKRAATMDISISS-AVGGMIKPNDHVDV-VMVRSLSERKPT 166
               +L KG      ++      +   +   + +   ++     +RK  
Sbjct: 118 FNHLVLKKGNVIYKFNLKKQDEYLLDSLNTGNRLSFQLITLETDKRKGM 166


>gi|159901123|ref|YP_001547370.1| hypothetical protein Haur_4611 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894162|gb|ABX07242.1| hypothetical protein Haur_4611 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 363

 Score = 59.4 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 94/314 (29%), Gaps = 68/314 (21%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEE------VITENPAKFINVLISKGD 54
           M+    +G++++ V  + A       ++                T  P   + +L +  D
Sbjct: 1   MRQNPALGMILAVVVLIAALAGGYVYLTNQQKSQTSGDPSLLEPTNMPVPNVQILEAATD 60

Query: 55  LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD-GVLVRVPILKGDPIRLEKL 113
           +    ++T   LE    P E        D         +  G +    I  G+ I+    
Sbjct: 61  IEANKLITGADLEQYFNPLEVPPSDVTPDDVLYTEFYSVVQGKVTTTDIRGGERIKKSTF 120

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------- 163
            + G      +   G+ +        S +GG++   +++D++   SL +           
Sbjct: 121 RNAGIAEKLPIPVAGEESLKAYNMFVSDIGGIVAEGNNIDILGSYSLEQPYLRFTGIDKD 180

Query: 164 -----------KPTVTVVLSNIRVIAI---------DHNIDSDERVLVGS---------- 193
                        +  V+  N+ V+ +              +       +          
Sbjct: 181 GIITLVDEKYLDISTHVLAQNVPVLKVVAPPLISPDGQQTGAAPPAAEPTIEVVVDGNPV 240

Query: 194 ----------------TATLELTPMQAKAL--VAAQSVAKLSLVLRSIADLN---PSSSE 232
                              + LT  QA+ L    A++ +KL++V+R   D +    ++  
Sbjct: 241 EPQATPEPIFTEGSQWQIVVALTAQQAELLEYTKAKTGSKLNVVVRRADDQDDRIATTGV 300

Query: 233 DSDVWDVQEEGKEI 246
             D+        ++
Sbjct: 301 TMDLLMRLYGVPQV 314


>gi|218680528|ref|ZP_03528425.1| hypothetical protein RetlC8_17240 [Rhizobium etli CIAT 894]
          Length = 166

 Score = 59.4 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGST----ATLELTPMQAKALVAA--QSVAKLS 217
           +      L N++V+A+     ++  V   ++     T+E+TP +A+ L+ A  QS   L+
Sbjct: 85  RVVTRTFLQNVKVLAVGAATTAEGAVTKANSTYNNVTVEVTPAEAEMLIFALGQSNGSLN 144

Query: 218 LVLRSIADLNPSS 230
           LVLR+ AD     
Sbjct: 145 LVLRNPADNTVED 157


>gi|283782738|ref|YP_003373492.1| hypothetical protein HMPREF0424_0231 [Gardnerella vaginalis 409-05]
 gi|283441123|gb|ADB13589.1| hypothetical protein HMPREF0424_0231 [Gardnerella vaginalis 409-05]
          Length = 284

 Score = 59.4 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 86/250 (34%), Gaps = 65/250 (26%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            R    V   +  L AG++A+ +VS               +   + ++K ++  G  V+ 
Sbjct: 47  RRQRAFVRKIIIVLCAGMMALLVVSTIIDSQ---------ETQVIAVAKHNIQKGSRVSV 97

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           N + +V  P+  VF+  + +    NA      ++    I KG PI    L          
Sbjct: 98  NDIAYVRVPKHKVFNQALSNNISANAS-----IIATCEIRKGMPILQTLLSKIP------ 146

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT--------------- 168
            +P+G  + T+ ++ +      + P + +D+   + + + + + +               
Sbjct: 147 RIPEGFTSITIHLASADHT---LLPGEKIDLAFSKPVQDEEISNSKNAESHNNEKSKSST 203

Query: 169 -------------------------VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203
                                     V+ N+ V+ I  +    +     +T TL +    
Sbjct: 204 IENNDKNKNQDIEENNIAEIDERYVSVVHNVTVMQITQSTQVSQNQQ--NTTTLAMPAAD 261

Query: 204 AKALVAAQSV 213
           A  L+ AQS 
Sbjct: 262 ALRLLQAQSA 271


>gi|208701981|ref|YP_002267168.1| SAF domain protein, putative [Bacillus cereus H3081.97]
 gi|228943661|ref|ZP_04106082.1| hypothetical protein bthur0008_62160 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228956198|ref|ZP_04118081.1| hypothetical protein bthur0006_54880 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|332287970|ref|YP_004169156.1| hypothetical protein pBMB0558_00225 [Bacillus thuringiensis CT43]
 gi|208658273|gb|ACI30639.1| SAF domain protein, putative [Bacillus cereus H3081.97]
 gi|228803515|gb|EEM50251.1| hypothetical protein bthur0006_54880 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228816013|gb|EEM62217.1| hypothetical protein bthur0008_62160 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|315273042|gb|ADU03111.1| hypothetical protein pBMB0558_00225 [Bacillus thuringiensis serovar
           chinensis CT-43]
 gi|326943372|gb|AEA19267.1| SAF domain protein [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 249

 Score = 59.4 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 45/206 (21%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
           E++ ++     +V+++K D+     +T + ++ V+  ++      + D  +P  +Q L  
Sbjct: 27  ELVFKDKINTTDVIVAKQDIKFKSEITKDDIKVVSVRKDI----AVHDALKPEDVQLLLN 82

Query: 96  VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
               + I KG  I   KLVD  N  L     KG+  A +  S   AV G ++     D  
Sbjct: 83  KHASIDIKKGTQIY-SKLVDTYN--LIPNEEKGEFIAPIPDSWLFAVPGSLRKTYIADFY 139

Query: 156 MVRSLSERKPTV-------------------------------TVVLSNIRVIAID---- 180
           +V    +                                      +L N+RV ++     
Sbjct: 140 LVPDKDQAVIRSLVQDSKGNEGKNDKEPLKTDEDSDVEVMRLAKPILQNVRVASVKDNGN 199

Query: 181 ---HNIDSDERVLVGSTATLELTPMQ 203
                   D++   GS + +E+   Q
Sbjct: 200 KEVTETQEDQQNATGSVSNIEVIADQ 225


>gi|218290612|ref|ZP_03494714.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239396|gb|EED06593.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 267

 Score = 59.4 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 71/227 (31%), Gaps = 22/227 (9%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           I  + ++        E +  +        ++  DL VG V+ P  +     P   +  G 
Sbjct: 20  IAGLAVLGLVTAFVIERVATHKVPMAMAFVAAHDLTVGEVIGPKDVTRTKVPVATLPPGA 79

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISIS 139
           +             G +V  P+ +G  +    L   G   G+  L     RA  + +S  
Sbjct: 80  MTVSP--------VGKMVTSPVYQGQVLVGGDLGRMGGVNGVMRLYGTQTRAYPLTLSTQ 131

Query: 140 SAVGGMIKPNDHVDVVMVRSLSER-KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLE 198
           S     +     VDV+              +V  +  ++A+    +            + 
Sbjct: 132 SVPMNDVSVGQAVDVIAQMPSPNGAGNVTKLVAQDAPILAVSPAQN-----------VIL 180

Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245
           +    ++AL  A +  KL + L       P+ +  +   +    G  
Sbjct: 181 VGVTDSEALQMANAT-KLYVALSPETPWVPAETASNSTANSAASGST 226


>gi|229492883|ref|ZP_04386679.1| SAF domain protein [Rhodococcus erythropolis SK121]
 gi|229320157|gb|EEN85982.1| SAF domain protein [Rhodococcus erythropolis SK121]
          Length = 234

 Score = 59.4 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 28/218 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R + + V     +VA I  +  VS                  +VL+   D+  G V+ 
Sbjct: 40  RRRPIYLAVGIALVVVAVIGMLAAVSAMRA------------TTDVLVLARDVQQGQVIE 87

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L       +                  + G+     +  G  +    + D+      
Sbjct: 88  SKDLTVKTVNVD-----ADLGALSAGERGRVIGMSAGTRLPAGSVLMPAAVTDQ------ 136

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
            +  +G     + +         I P D + VV      +  P    V +  +V ++   
Sbjct: 137 VVPGEGLTMVGITVGYPHLPSEAIVPGDMIRVVDTPREGDDPPVTGPVNTKAQVYSMTVI 196

Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            ++ E     +T  L +   +A  + A  +  ++S+VL
Sbjct: 197 AEAGE-----TTLNLLVPEAEANWVAARAATKRVSIVL 229


>gi|256826164|ref|YP_003150124.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547]
 gi|256689557|gb|ACV07359.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547]
          Length = 218

 Score = 59.4 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 28/192 (14%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
             P     VL++  ++A G  +T   L  +  PE               +++EL G  V 
Sbjct: 49  PAPPVTTEVLVADAEIAPGTTLTAEHLRTIELPEGAAAWDA-------GSVEELTGRTVT 101

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           +P+  GDP+    ++  G       +P G+    + +     +     P   V +V    
Sbjct: 102 IPLAPGDPVTPRSVLPAGE-----QIPGGRELIFLPVLDPPVLAAA-HPGSTVRLV---- 151

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA-----QSVA 214
               + T   +     V +           L G    LELTP Q+ A+ +A         
Sbjct: 152 ---DRTTGETLADRATVRSTAPIDPDAVDSLGGLW--LELTPAQSDAVASAGVQTGSQEG 206

Query: 215 KLSLVL-RSIAD 225
            +++ L RS  +
Sbjct: 207 AVAVSLVRSPQE 218


>gi|28572304|ref|NP_789084.1| membrane/secreted protein [Tropheryma whipplei TW08/27]
 gi|28410435|emb|CAD66821.1| putative membrane/secreted protein [Tropheryma whipplei TW08/27]
          Length = 248

 Score = 59.0 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 67/205 (32%), Gaps = 33/205 (16%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + I ++ + A   G+  +   +    Q              V ++   L++G        
Sbjct: 13  ILIGLALIAASFIGVFFVIKTNNSKSQ--------------VYVATRPLSIGDKFDAKQF 58

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
             V        D +I     PNA       +   PI+ G+ +    LV         ++ 
Sbjct: 59  SIVEANLGANLDKYITPGSLPNA-------VFNRPIMPGEFLPKSALVP--------VID 103

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRVIAIDHNIDS 185
           K   A  + I  +  + G +K  D VDV     + E       ++   +RV  +  +   
Sbjct: 104 KDIVAVVLRI--AGDLPGDVKEGDLVDVWAAVKIKEEGFWQSELIAKTLRVSRVIVSTSQ 161

Query: 186 DERVLVGSTATLELTPMQAKALVAA 210
            +     +   ++ +  +   L+ A
Sbjct: 162 FD-PRGTTKVEVQASRDRLSYLLNA 185


>gi|307256575|ref|ZP_07538356.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306864985|gb|EFM96887.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 259

 Score = 59.0 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 10/191 (5%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           +  +  + +  L+        V       E   +    K I  +    DL  G ++ P  
Sbjct: 1   MFSVSAAYLCCLLNEGTTTENVGTTTTSEESSNSPVTEKVITTVTLNRDLEKGTLIQPED 60

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIRLEKLVDRGNGG-- 120
                            D+      +    L G LV   +  G  +    ++   +    
Sbjct: 61  YTLSELTVAETSPLVDSDLKALLDAEPNHSLQGFLVTENLKMGSLLTPNLIITPEDPRFI 120

Query: 121 LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL----SERKPTVTVVLSNIR 175
           L SL P  + A  + +      +   ++  D V V  V+         + ++  +  N++
Sbjct: 121 LLSLEPSQEVAYRIYVQDAEQYILDSVRGGDLVSVYSVQQDLAHPEREQNSLVKIADNLK 180

Query: 176 VIAIDHNIDSD 186
           V+ +      +
Sbjct: 181 VLQVKSFTQEE 191


>gi|317483025|ref|ZP_07942027.1| SAF domain-containing protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915526|gb|EFV36946.1| SAF domain-containing protein [Bifidobacterium sp. 12_1_47BFAA]
          Length = 208

 Score = 59.0 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 53/181 (29%), Gaps = 18/181 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   ++++   +  G ++    ++    P                 ++++ G + ++
Sbjct: 46  AVVETEPMVVAARSIRRGDIILAADVQLADMPVSAA------GPSWTGNIEDVVGKVAQI 99

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            I   DPI             + + P G     + ++ S      +   D V +V     
Sbjct: 100 DIEAADPIS------THMARDAPVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGC 150

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                    +  N  V+ +                +  + P  A  ++  Q    +  V+
Sbjct: 151 EGADC---TLAENATVMNVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 207

Query: 221 R 221
           R
Sbjct: 208 R 208


>gi|329945240|ref|ZP_08293071.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529283|gb|EGF56204.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 261

 Score = 59.0 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 45/134 (33%), Gaps = 13/134 (9%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +    +    +    V+   P +   VL++   ++ G ++T   +     P  ++    +
Sbjct: 1   MVAVCLGTAVLVALSVLRPGPEQGRQVLVAARQVSAGTLITEQDVTTSRLPASSLPQSGL 60

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA 141
                  + +++ G    + +  G  +         +G  +  L   +R   + +     
Sbjct: 61  A------SSEQVVGTRAAITLEPGTVLTSSM----TSGHEAEQLGPDERLVQVPVD---V 107

Query: 142 VGGMIKPNDHVDVV 155
              +  P   VDV+
Sbjct: 108 GAELAHPGTRVDVI 121


>gi|298253092|ref|ZP_06976884.1| hypothetical protein GV51_0271 [Gardnerella vaginalis 5-1]
 gi|297532487|gb|EFH71373.1| hypothetical protein GV51_0271 [Gardnerella vaginalis 5-1]
          Length = 284

 Score = 58.6 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 86/250 (34%), Gaps = 65/250 (26%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            R    V   +  L AG++A+ +VS               +   + ++K ++  G  V+ 
Sbjct: 47  RRQRAFVRKIIIVLCAGMMALLVVSTIIDSQ---------ETQVIAVAKHNIQQGSRVSV 97

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           N + +V  P+  VF+  + +    NA      ++    I KG PI    L          
Sbjct: 98  NDIAYVRVPKHKVFNQALSNNISANAS-----IIATCEIRKGMPILQTLLSKIP------ 146

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT--------------- 168
            +P+G  + T+ ++ +      + P + +D+   + + + + + +               
Sbjct: 147 RIPEGFTSITIHLASADHT---LLPGEKIDLAFSKPVQDEEISNSKNAESHNNEKSKSST 203

Query: 169 -------------------------VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203
                                     V+ N+ V+ I  +    +     +T TL +    
Sbjct: 204 IENNDKNKNQDIEENNIAEIDERYVSVVHNVTVMQITQSTQVSQNQQ--NTTTLAMPAAD 261

Query: 204 AKALVAAQSV 213
           A  L+ AQS 
Sbjct: 262 ALRLLQAQSA 271


>gi|219848639|ref|YP_002463072.1| SAF domain-containing protein [Chloroflexus aggregans DSM 9485]
 gi|219542898|gb|ACL24636.1| SAF domain protein [Chloroflexus aggregans DSM 9485]
          Length = 265

 Score = 58.6 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 68/239 (28%), Gaps = 53/239 (22%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   L  I++     + A    +  +     +              V+I   D+  G  +
Sbjct: 15  RSNPLPAILIGLGLIVTAVFTVIAFLEAGQSE-------------PVVILARDVPYGHQL 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           + + L  V  P           +    +  ++ G      +   D ++   +  +     
Sbjct: 62  SADDLTVVLLPRHRP-----IQLTGIASPAQVIGQYAARNLSANDLLQPSMVTAQSPAQP 116

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------------ 163
                +      + +  S+   G +  +D V++                           
Sbjct: 117 VYPNGETLTPGMVPVPFSTETIGPLTHHDRVNIGFNDPSGAADVCDRARSVAEGRTPTVL 176

Query: 164 --------KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
                   +P    +LS  RV+ ID              A LELTP Q+ A+ A Q+  
Sbjct: 177 PPDTPLQPRPYACRLLSGARVLYIDSEAQ---------VAYLELTPYQSHAIWALQAAG 226


>gi|111026111|ref|YP_708394.1| hypothetical protein RHA1_ro10043 [Rhodococcus jostii RHA1]
 gi|110824954|gb|ABH00236.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 235

 Score = 58.6 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 70/218 (32%), Gaps = 28/218 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R + + +     +VA I  +  V+                  +VL+   ++  G  + 
Sbjct: 41  RRRPIYLAIGVALVVVAVIGMLTAVNAMRA------------TTDVLVLTNEVQQGETIE 88

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L   +   +             +    + G+     +  G  +    + D+   G  
Sbjct: 89  SKDLAAKSVNVD-----ADLGALPASERGRVVGMSASTRLPAGTVLLPSAITDQVVPG-- 141

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
               +G     + +S S      I P D V VV      +  P    + +  +V +    
Sbjct: 142 ----EGLTMVGITVSYSHLPSEPIVPGDMVRVVDTPRDQDDPPVQGPINTKAQVYSTKEI 197

Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            ++ E     +T  L +   +A  + A  +  ++++VL
Sbjct: 198 PEAGE-----TTLNLLVPEAEANWVAARGATKRVAIVL 230


>gi|226349288|ref|YP_002776402.1| hypothetical membrane protein [Rhodococcus opacus B4]
 gi|226245203|dbj|BAH55550.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 235

 Score = 58.6 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 70/218 (32%), Gaps = 28/218 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R + + +     +VA I  +  V+                  +VL+   ++  G  + 
Sbjct: 41  RRRPIYLAIGVALVVVAVIGMLTAVNAMRA------------TTDVLVLTNEVQQGETIE 88

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L   +   +             +    + G+     +  G  +    + D+      
Sbjct: 89  SKDLAAKSVNVD-----ADLGALPASERGRVVGMSASTRLPAGTVLLPSAITDQ------ 137

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
            +  +G     + +S S      I P D V VV      +  P    + +  +V +    
Sbjct: 138 VVPGEGLTMVGITVSYSHLPSEPIVPGDMVRVVDTPRDQDDPPVQGPINTKAQVYSTKEI 197

Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            ++ E     +T  L +   +A  + A  +  ++++VL
Sbjct: 198 PEAGE-----TTLNLLVPEAEANWVAARGATKRVAIVL 230


>gi|227832659|ref|YP_002834366.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
 gi|262182856|ref|ZP_06042277.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
 gi|227453675|gb|ACP32428.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
          Length = 214

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 54/170 (31%), Gaps = 11/170 (6%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79
            I+     +   V        +  +   V++   D+A G  +  + +     P   +   
Sbjct: 16  VILRRVTAAVLLVAAAASALASTREQPRVVVMARDVAAGETLALSDVSVARVPSSALPAT 75

Query: 80  FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139
            +      +   +  G ++      G+ +   +L+   +  ++    +      + ++  
Sbjct: 76  AL-----GSNPDDAVGRVLVAAASTGEILTSTRLL--SSDLIADFGMEDGHLIPLTLAEP 128

Query: 140 SAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAIDHNIDSD 186
             +   +   D V++V     S+        + +    RV+++    D  
Sbjct: 129 E-IARNLHHGDTVNIVSTDDGSDDISAPTRGSTIARGARVVSVGTGEDDA 177


>gi|297242988|ref|ZP_06926926.1| hypothetical protein GVAMD_1000 [Gardnerella vaginalis AMD]
 gi|296889199|gb|EFH27933.1| hypothetical protein GVAMD_1000 [Gardnerella vaginalis AMD]
          Length = 259

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 87/250 (34%), Gaps = 65/250 (26%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            R    V   +  L AG++A+ +VS               +   + ++K ++  G  V+ 
Sbjct: 22  RRQRAFVRKIIIVLCAGMMALLVVSTIIDSQ---------ETQVIAVAKHNIQQGSRVSV 72

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
           N + +V  P+  VF+  + +    NA      ++    I KG PI    L          
Sbjct: 73  NDIAYVRVPKHKVFNQALSNNISANAS-----IVATCEIRKGMPILQTLLSKIP------ 121

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT--------------- 168
            +PKG  + T+ ++ +      + P + +D+   + + + + + +               
Sbjct: 122 RIPKGFTSITIHLASADHT---LLPGEKIDLAFSKPVQDEEISNSQNAEIHNSEKSKSNT 178

Query: 169 -------------------------VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203
                                     V+ N+ V+ I  +  + +     +T TL +    
Sbjct: 179 VTNNDKNKNHDIEENNIAEIDERYVSVVHNVMVMQITQSTQASQNQQ--NTTTLAMPAAD 236

Query: 204 AKALVAAQSV 213
           A  L+ AQS 
Sbjct: 237 ALRLLQAQSA 246


>gi|325067747|ref|ZP_08126420.1| hypothetical protein AoriK_07996 [Actinomyces oris K20]
          Length = 250

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 13/128 (10%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
              V+   P +   VL++   ++ G V+T   +     P   +    +       +  + 
Sbjct: 2   ALSVLRPGPERGQQVLVASRSISAGAVLTEQDVSISNLPAGALPQSPLT------SAGQA 55

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
            G    + + KG  +         +G L+  L   +R   + +        + +P   VD
Sbjct: 56  VGSRAAISLEKGTVLTASM----TSGYLAQQLGDDERLVQVPVD---VGAELARPGARVD 108

Query: 154 VVMVRSLS 161
           ++   S  
Sbjct: 109 IIGQASED 116


>gi|187251720|ref|YP_001876202.1| SAF domain-containing protein [Elusimicrobium minutum Pei191]
 gi|186971880|gb|ACC98865.1| SAF domain protein [Elusimicrobium minutum Pei191]
          Length = 215

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 18/188 (9%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           + I V ++  D+    V+T   +     P     D F  +         ++G +  V I 
Sbjct: 20  EPIKVFVALHDIPALSVITGQDIATA-VPAIAERDAFFSEQDIAL----IEGAVALVNIP 74

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND--HVDVVMVRS-- 159
           KG  I+   L  +     SS L KG     + + I +A   +        VD+++     
Sbjct: 75  KGTQIKKNSLKLKDKKPSSSELNKGWGYYILPVDIQTADMVLSNGGSRERVDLIVRTYRE 134

Query: 160 -LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV-AKLS 217
                +P V  +L NI V  +              +  L   P  A+ L   +   A + 
Sbjct: 135 IGDLNEPVVFTLLQNIEVKDVL-------ENNGAYSLLLITDPADAQLLFLTEKKDAFVK 187

Query: 218 LVLRSIAD 225
           ++LR+  D
Sbjct: 188 VLLRAETD 195


>gi|320459290|dbj|BAJ69911.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 172

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 57/181 (31%), Gaps = 18/181 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   ++++   +  G ++    ++  A P   +             ++++ G + ++
Sbjct: 10  AVVETEPMVVAARSIRRGDIILAVDVQLAAMPVSAI------GPSWAGNIEDVVGKVAQI 63

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            I   DPI             + + P G     + ++ S      +   D V +V     
Sbjct: 64  DIEAADPIS------THMARDAPVTPTGTTVIEVRLASSV---DDVLAGDRVRLVSAVGC 114

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                    +  N  V+ +     +    +     +  + P  A  ++  Q    +  V+
Sbjct: 115 EGADC---TLAENATVMNVGKPDTTGALGVNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 171

Query: 221 R 221
           R
Sbjct: 172 R 172


>gi|22127357|ref|NP_670780.1| hypothetical protein y3483 [Yersinia pestis KIM 10]
 gi|45442769|ref|NP_994308.1| hypothetical protein YP_3008 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809089|ref|YP_653005.1| hypothetical protein YPA_3098 [Yersinia pestis Antiqua]
 gi|108810717|ref|YP_646484.1| hypothetical protein YPN_0552 [Yersinia pestis Nepal516]
 gi|145597788|ref|YP_001161864.1| hypothetical protein YPDSF_0478 [Yersinia pestis Pestoides F]
 gi|150260278|ref|ZP_01917006.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|165924894|ref|ZP_02220726.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939030|ref|ZP_02227582.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008960|ref|ZP_02229858.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211995|ref|ZP_02238030.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399463|ref|ZP_02304987.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418776|ref|ZP_02310529.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425125|ref|ZP_02316878.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167466373|ref|ZP_02331077.1| membrane protein [Yersinia pestis FV-1]
 gi|218927883|ref|YP_002345758.1| hypothetical protein YPO0694 [Yersinia pestis CO92]
 gi|229837376|ref|ZP_04457539.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis Pestoides A]
 gi|229840588|ref|ZP_04460747.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842862|ref|ZP_04463014.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900912|ref|ZP_04516036.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis Nepal516]
 gi|294502760|ref|YP_003566822.1| hypothetical protein YPZ3_0650 [Yersinia pestis Z176003]
 gi|21960441|gb|AAM87031.1|AE013951_6 hypothetical [Yersinia pestis KIM 10]
 gi|45437635|gb|AAS63185.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774365|gb|ABG16884.1| membrane protein [Yersinia pestis Nepal516]
 gi|108781002|gb|ABG15060.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115346494|emb|CAL19369.1| putative membrane protein [Yersinia pestis CO92]
 gi|145209484|gb|ABP38891.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149289686|gb|EDM39763.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|165912986|gb|EDR31611.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923094|gb|EDR40245.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992299|gb|EDR44600.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206741|gb|EDR51221.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962770|gb|EDR58791.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051967|gb|EDR63375.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055888|gb|EDR65669.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229682251|gb|EEO78343.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis Nepal516]
 gi|229690129|gb|EEO82186.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696954|gb|EEO87001.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705499|gb|EEO91509.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis Pestoides A]
 gi|262360792|gb|ACY57513.1| hypothetical protein YPD4_0604 [Yersinia pestis D106004]
 gi|262364737|gb|ACY61294.1| hypothetical protein YPD8_0604 [Yersinia pestis D182038]
 gi|294353219|gb|ADE63560.1| hypothetical protein YPZ3_0650 [Yersinia pestis Z176003]
 gi|320016743|gb|ADW00315.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 288

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 21/199 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS--KGDLAVG 58
           M    L+   +  V   ++GI+    ++P     E +      K  N++++  + DL  G
Sbjct: 1   MNRKFLILFSLLIVAIGISGIL----LNPDKEIPELLTQTEKRKERNIVLAQTRHDLTAG 56

Query: 59  MVVTPNILEWVAFPEENVFD------------GFIDDVHQPNAMQELDGVLVRVPILKGD 106
            +++           +   D                         +LDG L++  IL G 
Sbjct: 57  TLISKEDYSLQNITVDESSDLVKNDLSHGHRIDGDSIADDRTHDHKLDGHLLKNNILAGS 116

Query: 107 PIRLEKLVDRGNGGLSSL-LPKGKRAATMDISISS-AVGGMIKPNDHVDV-VMVRSLSER 163
            I  E L+   +   S L L  G+      I+  +  +   + P D +   ++    ++ 
Sbjct: 117 YIIDEMLISPDSREFSRLNLKHGEIIYKFYITEKNEYLLNTLNPGDFLSFQLLTLETNKT 176

Query: 164 KPTVTVVLSNIRVIAIDHN 182
           K     +  + + ++    
Sbjct: 177 KGMENGIAIDSKSMSSKQR 195


>gi|162421130|ref|YP_001604875.1| hypothetical protein YpAngola_A0255 [Yersinia pestis Angola]
 gi|162353945|gb|ABX87893.1| conserved hypothetical protein [Yersinia pestis Angola]
          Length = 288

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 21/199 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS--KGDLAVG 58
           M    L+   +  V   ++GI+    ++P     E +      K  N++++  + DL  G
Sbjct: 1   MNRKFLILFSLLIVAIGISGIL----LNPDKEIPELLTQTEKRKERNIVLAQTRHDLTAG 56

Query: 59  MVVTPNILEWVAFPEENVFD------------GFIDDVHQPNAMQELDGVLVRVPILKGD 106
            +++           +   D                         +LDG L++  IL G 
Sbjct: 57  TLISKEDYSLQNITVDESNDLVKNDLSHGHRIDGDSIADDRTHDHKLDGHLLKNNILAGS 116

Query: 107 PIRLEKLVDRGNGGLSSL-LPKGKRAATMDISISS-AVGGMIKPNDHVDV-VMVRSLSER 163
            I  E L+   +   S L L  G+      I+  +  +   + P D +   ++    ++ 
Sbjct: 117 YIIDEMLISPDSREFSRLNLKHGEIIYKFYITEKNEYLLNTLNPGDFLSFQLLTLETNKT 176

Query: 164 KPTVTVVLSNIRVIAIDHN 182
           K     +  + + ++    
Sbjct: 177 KGMENGIAIDSKSMSSKQR 195


>gi|291575287|gb|ADE10212.1| hypothetical protein [Actinoplanes liguriensis]
          Length = 266

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 63/235 (26%), Gaps = 36/235 (15%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGM---VVTPNILEWVA-FPEENVFDGFIDDVHQP 87
            ++ +    +  +   +L++   +  G     +    L      P   V  G +      
Sbjct: 26  ARSADRRALSGREGTWILVAGQHIPSGTSGAEIRARGLTERLLVPTVTVPAGALTTWDSA 85

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
                L G L    +L               G +   +P+   A ++ ++++  V G I 
Sbjct: 86  LDPLRLGGDLQPRQLLMRTLFVPASPAPSHTGRIP--VPRRSLAVSVALNVAPQVAGNIT 143

Query: 148 PNDHVDVVMVRSLS-------ERKPTVTVVLSNIRVIAIDHNIDSDE------------- 187
           P D V V              E  P   ++L   RVI I                     
Sbjct: 144 PGDQVAVYYTYQAKVLMAEDHETIPMTELLLPKARVITIGEAEPGQAPVTPSPSPTPGPS 203

Query: 188 ----------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
                     + +     TL +    A  LV A     L L L        +   
Sbjct: 204 ASAGDSTAAVKEIQRYVVTLAVGDTDALRLVHAAQSGSLYLALLGPNATASTGPA 258


>gi|254823442|ref|ZP_05228443.1| hypothetical protein MintA_26166 [Mycobacterium intracellulare ATCC
           13950]
          Length = 216

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 65/191 (34%), Gaps = 13/191 (6%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
             + +     +  V+++  DL  G  +T   +         V DG   DV        + 
Sbjct: 33  ATLRSNPAGDYTQVVVADHDLRPGNALTAADVRIEKRLASTVPDGARADV------GAVV 86

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLS--SLLPKGKRAATMDISISSAVGGMIKPNDHV 152
           G  +  P  +G+ +   +L+       +  S    G R   + ++   A+  +++  D V
Sbjct: 87  GSTLAGPARRGEVLTDVRLLGNRLAEAAIGSKAGPGARIVPLHLAD-GALIDLVRAGDVV 145

Query: 153 DVV---MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209
           DV+      +         VV ++  V+ +    +  +         + L    A  +  
Sbjct: 146 DVLAAPATGTPETAHAAPRVVATDAVVVLV-SAKEKLQSADADRVVLVALPARVANTVAG 204

Query: 210 AQSVAKLSLVL 220
           +     ++L L
Sbjct: 205 SALGQTVTLTL 215


>gi|120405786|ref|YP_955615.1| SAF domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119958604|gb|ABM15609.1| SAF domain [Mycobacterium vanbaalenii PYR-1]
          Length = 217

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 70/184 (38%), Gaps = 24/184 (13%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
           VV+G   ++AG+ A R              +  A+  +V+++  DL+ G  +T   +   
Sbjct: 30  VVAGALVVLAGVAAWRG-------------DPQAEQSDVVVTLHDLSPGAEITAADVRVE 76

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
                 V +G   DV        + G  +  P  +G+ +   +L+       ++      
Sbjct: 77  TRSASTVPEGAHSDVD------AVVGATLAGPTRRGEIVTDVRLLSSRLAESAA--GPDA 128

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189
           R   + ++ + A+  +++  D VD+V     ++      ++ ++  V+ +    +     
Sbjct: 129 RIVPIPLADA-ALTDLVRAGDVVDIVA--GPADEAGAARLIATDAVVVLVSAEQNGVGSR 185

Query: 190 LVGS 193
             G 
Sbjct: 186 SGGR 189


>gi|167036494|ref|YP_001664072.1| SAF domain-containing protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320114922|ref|YP_004185081.1| SAF domain-containing protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855328|gb|ABY93736.1| SAF domain [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928013|gb|ADV78698.1| SAF domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 180

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 66/187 (35%), Gaps = 34/187 (18%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M     + ++ + VFA    +    +                 K   V++ + D+  G V
Sbjct: 1   MSRIIKIALITAVVFAAFMFVFMQNI----------------QKTEKVVVVEKDIPAGTV 44

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           ++ + ++    P   V   +        ++ ++ G +V+   ++GD I +E L  +    
Sbjct: 45  ISQDAVKVTDVPASVVRPNY------AKSLADVIGKVVKEGRVQGDFIPVEILTSQDEK- 97

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
              LL  G    T+ I         ++  D V  ++      +      VL   +VI++ 
Sbjct: 98  ---LLEAGHVIMTIQIDKVE--AKTLQSGDTVSFIVFDQTGSK------VLEGFKVISVF 146

Query: 181 HNIDSDE 187
            + D   
Sbjct: 147 SDSDKAN 153


>gi|227546443|ref|ZP_03976492.1| cation transport ATPase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|322689956|ref|YP_004209690.1| hypothetical protein BLIF_1777 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|227213100|gb|EEI80979.1| cation transport ATPase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|320461292|dbj|BAJ71912.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 189

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 54/181 (29%), Gaps = 18/181 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   ++++   +  G ++    ++    P                 ++++ G + ++
Sbjct: 27  AVVETEPMVVAARSIRRGDIILAADVQLADMPVSAA------GPSWTGNIEDVVGKVAQI 80

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            I   DPI             + + P G     + ++ S      +   D V +V     
Sbjct: 81  DIEAADPIS------THMARDAPVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGC 131

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                    +  N  V+ +     +          +  + P  A  ++  Q    +  V+
Sbjct: 132 EGADC---TLAENATVMNVGKPDATGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 188

Query: 221 R 221
           R
Sbjct: 189 R 189


>gi|220930503|ref|YP_002507412.1| hypothetical protein Ccel_3141 [Clostridium cellulolyticum H10]
 gi|220000831|gb|ACL77432.1| hypothetical protein Ccel_3141 [Clostridium cellulolyticum H10]
          Length = 226

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 62/170 (36%), Gaps = 24/170 (14%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M+      I ++ +F AL+A  + +                   + +++L+++ D+  G 
Sbjct: 1   MRQKLKGVIGIAIMFTALIATYLWVTYGQT------------EIQSVSLLVAQKDIPKGT 48

Query: 60  VVT--PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           V+    +  +      E+   G I     PN +  LDG +    I         ++V + 
Sbjct: 49  VINNAQDYFKSQKISLESAVAGAIK----PNQINLLDGRIAEQFIPAN-----GQIVRQT 99

Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV 167
               S +L + +    +  +   ++   I+  D + +  + S  + K   
Sbjct: 100 FSNNSLILKENEFVFKLPPTWVYSIPSSIRRGDKISIYEIDSKIDNKLNT 149


>gi|46190327|ref|ZP_00121647.2| COG2217: Cation transport ATPase [Bifidobacterium longum DJO10A]
 gi|189440534|ref|YP_001955615.1| Flagellar basal body P-ring biosynthesis protein [Bifidobacterium
           longum DJO10A]
 gi|189428969|gb|ACD99117.1| Flagellar basal body P-ring biosynthesis protein [Bifidobacterium
           longum DJO10A]
          Length = 189

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 54/181 (29%), Gaps = 18/181 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   ++++   +  G ++    ++    P                 ++++ G + ++
Sbjct: 27  AVVETEPMVVAARSIRRGDIILAADVQLADMPVSAA------GPSWTGNIEDVVGKVAQI 80

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            I   DPI             + + P G     + ++ S      +   D V +V     
Sbjct: 81  DIEAADPIS------THMARDAPVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGC 131

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                    +  N  V+ +     +          +  + P  A  ++  Q    +  V+
Sbjct: 132 EGADC---TLAENATVMNVGKPDATGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 188

Query: 221 R 221
           R
Sbjct: 189 R 189


>gi|33867071|ref|NP_898629.1| hypothetical protein PBD2.014 [Rhodococcus erythropolis]
 gi|33668905|gb|AAP73899.1| conserved hypothetical protein [Rhodococcus erythropolis]
          Length = 235

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 28/218 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R + +       +V  I A+ LV+               +  NVL+   D+A G  +T
Sbjct: 41  RRRPVFLAAGIALVVVFVIGAVALVNGMR------------QVTNVLVVSQDIAQGQQIT 88

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L                          + G +  VPI  G  +    +        +
Sbjct: 89  SQDLTTKQVNAH-----AGIASVAIEDKATVVGQVAAVPIPSGTVLNPNAVTS------A 137

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
            +  KG     + +S +      ++  D V +V      +  P    + S  +V++    
Sbjct: 138 VIPTKGLTLVGVTVSYAKLPAEPLRAGDMVRIVDTPRDQDDSPVQGPITSKAQVVSTTLI 197

Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
             + E     +T  + +   +A  + A  +  ++++VL
Sbjct: 198 EATQE-----TTVDVLVQADEASWVSARAATRRVAIVL 230


>gi|283778976|ref|YP_003369731.1| hypothetical protein Psta_1193 [Pirellula staleyi DSM 6068]
 gi|283437429|gb|ADB15871.1| hypothetical protein Psta_1193 [Pirellula staleyi DSM 6068]
          Length = 799

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 14/164 (8%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS----KGDLAVGMVVTPNILEWVAF 71
           AL  G+  M +                     + ++    K  +     +T         
Sbjct: 302 ALHKGLSVMAVAQSGQAAKGGSDDSEAPAEQKLAVAFPLVKRTIPAFQRITEQDFID--- 358

Query: 72  PEENVFDGFIDDVHQ-----PNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLL 125
           P     +    D              L G +    I  G  I   +L ++G  GG+ S++
Sbjct: 359 PVTRRPEFAYYDPDTATRSKLVPYDFLLGRVANRDIEAGTVISESELAEQGAKGGIGSVI 418

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV 169
           P  ++A  +  S        +   DH+D++    L   + T   
Sbjct: 419 PPDRQAVVISASQILG-SEYLSVGDHLDLLGSFKLEHVRTTEET 461


>gi|309790167|ref|ZP_07684739.1| SAF domain protein [Oscillochloris trichoides DG6]
 gi|308227752|gb|EFO81408.1| SAF domain protein [Oscillochloris trichoides DG6]
          Length = 274

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 68/238 (28%), Gaps = 52/238 (21%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K   L  I++         +  +  +     +              V++   D+  G  +
Sbjct: 18  KNNPLPAILIVVGLLGAVTLAILGFLESRKSE-------------TVVVMVRDVPYGQQI 64

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           +   L  V  P               +    + G      +   D ++   L+       
Sbjct: 65  SAEDLGTVTVPLHRPAQLA-----GVSDPATVVGQYAARNLGSNDLLQPSMLMAAPPSQP 119

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------------- 162
                +  +A  + +  ++   G +  +D V++                           
Sbjct: 120 VYPNGEQLQANMVPVPFATTTIGPLSYHDRVNIGFNDPSGAPDLCDQVRRAADGQPSAMP 179

Query: 163 ------RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214
                  +P    +LS++RV+ +D            + A LELTP Q+  + A Q+  
Sbjct: 180 VVSTGMTRPYACRLLSSVRVLYVDEA---------ANVAYLELTPYQSHTIWALQAAG 228


>gi|300741834|ref|ZP_07071855.1| SAF domain protein [Rothia dentocariosa M567]
 gi|300381019|gb|EFJ77581.1| SAF domain protein [Rothia dentocariosa M567]
          Length = 236

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 51/153 (33%), Gaps = 30/153 (19%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +      +K D+++G  +TP++L        +  D ++      +        +    I 
Sbjct: 54  QTYTYYTAKNDISIGQKITPDMLIEKQVNLGDSKDRYLSREQLESGKY-----IAVRQIP 108

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------ 157
            G+ I         +      + + +R  T+ +     +   +K  + VD+ ++      
Sbjct: 109 AGELIS--------SASAHENIQERRRLVTVTLD--RGIASTLKAGERVDIWVISSGKEK 158

Query: 158 -------RSLSERKPTVTVVLSNIRV--IAIDH 181
                      + +     ++ N  +  IA+D 
Sbjct: 159 QKVPEGEGKNEDNESEQKPLVQNAEISTIAVDE 191


>gi|269796338|ref|YP_003315793.1| SAF domain-containing protein [Sanguibacter keddieii DSM 10542]
 gi|269098523|gb|ACZ22959.1| SAF domain-containing protein [Sanguibacter keddieii DSM 10542]
          Length = 261

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 71/215 (33%), Gaps = 26/215 (12%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++A  +V          ++  P     V+++   L  G  +T + L  V  P     +G 
Sbjct: 58  VVAALVVGLATTLVVHRLSPTPEPRDPVVVASTALPAGTTLTADHLRTVRLPSAVTPEGA 117

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
                 P+    + G  + VP+  G  +    LVD  + G     P G   A + ++  +
Sbjct: 118 ------PDDADTVVGRTLAVPVTTGTVLGDTLLVDDTSTG-----PPGTVVAAVRLAEPA 166

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLS-----NIRVIAIDHNIDSDER------- 188
            +  ++ P   VD++    L +     +   +        V+    +   +         
Sbjct: 167 LLA-VLTPGTRVDLLAATPLHDHGEGTSTAAATTLAVRALVLPTPASPQEETGFLSGAGG 225

Query: 189 --VLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
                     + +TP +A  L        +S V+ 
Sbjct: 226 TAPGSSDLLLVAVTPDEATYLANVAGRQAVSAVVV 260


>gi|306823596|ref|ZP_07456971.1| SAF domain protein [Bifidobacterium dentium ATCC 27679]
 gi|309802885|ref|ZP_07696986.1| SAF domain protein [Bifidobacterium dentium JCVIHMP022]
 gi|304553303|gb|EFM41215.1| SAF domain protein [Bifidobacterium dentium ATCC 27679]
 gi|308220352|gb|EFO76663.1| SAF domain protein [Bifidobacterium dentium JCVIHMP022]
          Length = 213

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           A+    +++   +  G  +T +++     P +  ++     +       ++ G++ ++ I
Sbjct: 51  AETRPAVVTTQRIRRGDTITASVVAVRDIPYDAAWNNAFHTID------DVTGMVAQIDI 104

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD----VVMVR 158
             G  +             S ++P+G  A  + ++ S      +   D V     V    
Sbjct: 105 PDGGIVTATM------ARASPMIPQGHTAVDVRLASSI---DELDVGDEVTLSGAVPAQG 155

Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
              +    +  + S   VI         +     +TAT  ++P +A A++  Q  A +  
Sbjct: 156 DAGDDGGALRELASRATVIG-----KPAKDANGMATATFAMSPDEAAAVLQVQEYAAIIA 210

Query: 219 VLR 221
           V R
Sbjct: 211 VTR 213


>gi|260904284|ref|ZP_05912606.1| SAF domain-containing protein [Brevibacterium linens BL2]
          Length = 209

 Score = 56.7 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 50/169 (29%), Gaps = 16/169 (9%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
                   ++++  +L  G  +    L  V FP   V D     V   +  +   G    
Sbjct: 43  TPDPGGTPIVVANRNLPPGSQLRTQDLTLVEFPARLVPDKAFTSVSDADHKRTSAG---- 98

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
             + KG P+    ++D+     +           + ++  ++   +++P   + +     
Sbjct: 99  --LSKGSPLTQSAVLDQQ----ALPDGSTDLLMPVRLADDASAA-LLQPGQRIRLFSSLP 151

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208
                  V  V     V     +         G   ++ L+   A  + 
Sbjct: 152 DGGSDIVVKEVTIARLV-----DKGEGISAESGQLVSVILSSGDAARIA 195


>gi|257792958|ref|YP_003186357.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479650|gb|ACV59968.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 235

 Score = 56.7 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 81/251 (32%), Gaps = 47/251 (18%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK      +  +     V G IA        + +E            V +++  L     
Sbjct: 1   MKSWVRYTLATTLFVVGVGGSIAYNQFVSPMLTSEW-----------VYVARTQLPADTP 49

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + +E +  P+  V    I +         L G     P+ +        L       
Sbjct: 50  IQASDVERIRVPKSEVSPDAITNAEG------LMGTYTAQPVDQNQV-----LTALDTEP 98

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV--------LS 172
               +  G     +  +  ++V   ++  D+VD++ +         V ++          
Sbjct: 99  DPFTITPGTEDVPIPSTWIASVSETLRQGDYVDLIPIAEPQAGSNNVGMLTTTSEASEFK 158

Query: 173 NIRVIAIDHNIDS----------------DERVLVGSTATLELTPMQAKALVAAQSVAKL 216
           ++ V+++  + ++                     V ++  +++T  +A+AL +     K 
Sbjct: 159 HLLVLSVHTDNNAEVTSQQTGAPQSVGARGNGSGVPASVDVKMTSAEAQALASLIQQ-KY 217

Query: 217 SLVLRSIADLN 227
            L++  ++D N
Sbjct: 218 QLLIVGVSDDN 228


>gi|291516490|emb|CBK70106.1| Flagellar basal body P-ring biosynthesis protein [Bifidobacterium
           longum subsp. longum F8]
          Length = 189

 Score = 56.7 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 53/181 (29%), Gaps = 18/181 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              K   ++++   +  G ++    ++    P                 ++++ G + ++
Sbjct: 27  AVVKTEPMVVAARSIRRGDIILAADVQLADMPVSAA------GPSWTGNIEDVVGKVAQI 80

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            I   DPI             + + P G     + ++ S      +   D V +V     
Sbjct: 81  DIEAADPIS------THMARDAPVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGC 131

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                    +  N  V+ +                +  + P  A  ++  Q    +  V+
Sbjct: 132 EGADC---TLAENATVMNVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 188

Query: 221 R 221
           R
Sbjct: 189 R 189


>gi|312133843|ref|YP_004001182.1| flga [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773134|gb|ADQ02622.1| FlgA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 189

 Score = 56.3 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 53/181 (29%), Gaps = 18/181 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   ++++   +  G ++    ++    P                 ++++ G + ++
Sbjct: 27  AVVETEPMVVAARSIRRGDIILAADVQLADMPVSAA------GPSWTGNIEDVVGKVAQI 80

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            I   DPI             + + P G     + ++ S      +   D V +V     
Sbjct: 81  DIEAADPIS------THMARDAPVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGC 131

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                    +  N  V+ +                +  + P  A  ++  Q    +  V+
Sbjct: 132 EGADC---TLAENATVMNVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 188

Query: 221 R 221
           R
Sbjct: 189 R 189


>gi|322691896|ref|YP_004221466.1| hypothetical protein BLLJ_1707 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456752|dbj|BAJ67374.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 189

 Score = 56.3 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 53/181 (29%), Gaps = 18/181 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   ++++   +  G ++    ++    P                 ++++ G + ++
Sbjct: 27  AVVETEPMVVAARSIRRGDIILAADVQLADMPVSAA------GPSWTGNIEDVVGKVAQI 80

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            I   DPI             + + P G     + ++ S      +   D V +V     
Sbjct: 81  DIEAADPIS------THMARDAPVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGC 131

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                    +  N  V+ +                +  + P  A  ++  Q    +  V+
Sbjct: 132 EGADC---TLAENATVMNVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 188

Query: 221 R 221
           R
Sbjct: 189 R 189


>gi|326383759|ref|ZP_08205444.1| SAF domain-containing protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326197523|gb|EGD54712.1| SAF domain-containing protein [Gordonia neofelifaecis NRRL B-59395]
          Length = 182

 Score = 56.3 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 68/198 (34%), Gaps = 18/198 (9%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
           M L+         V +        VL +  DL  G V+T + L  V  P   V    + D
Sbjct: 1   MALLLVIAATASVVYSHRRPDAPRVLTAAADLRPGTVLTADDLTSVPMPAATVPASALRD 60

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS-AV 142
                   +  G  +  P+ +G+ I   +L+      L++ L     A  + +  +  +V
Sbjct: 61  ------TGKAVGQRLTGPVTRGEIITETRLLTSR---LAAQLTGSSTARLVPVRPADESV 111

Query: 143 GGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPM 202
             +++  D VDV+             V+     V A    + +       S   L +   
Sbjct: 112 ATLVRQGDTVDVL--------DADAAVLARGAVVAATPSAVSNRGIGGASSPILLAMNEQ 163

Query: 203 QAKALVAAQSVAKLSLVL 220
            A  + A      L+LVL
Sbjct: 164 SAHEVAATGLGMALALVL 181


>gi|315646608|ref|ZP_07899726.1| SAF domain protein [Paenibacillus vortex V453]
 gi|315278251|gb|EFU41571.1| SAF domain protein [Paenibacillus vortex V453]
          Length = 365

 Score = 56.3 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 31/178 (17%)

Query: 2   KLTRLMGIVVSGVF---ALVAGIIAMRLVSPHHVQTEE-------------VITENPAKF 45
           +  +L+   ++G     AL AG +   L      Q EE                +     
Sbjct: 7   RSRKLIFAGLAGAAVTGALCAGTMIYYLHGYKEQQGEERMKYELRITELEETQLQQLNSM 66

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
               +   D+  G  +    ++ V  P E   +         +  +E+ G  V++ +L+G
Sbjct: 67  QVAWVPVRDIPPGHFIEAKDIKEVRLPYEGASNN------LLSVKEEIAGKGVKIELLQG 120

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
            PI    L +      S L  +  ++  +           ++  D VDV +     + 
Sbjct: 121 TPITRTMLFEEEPTP-SDLRHREMKSVYLPSD--------LRQGDVVDVRVQFPTGQD 169


>gi|260914313|ref|ZP_05920782.1| flp operon protein C [Pasteurella dagmatis ATCC 43325]
 gi|260631414|gb|EEX49596.1| flp operon protein C [Pasteurella dagmatis ATCC 43325]
          Length = 262

 Score = 55.9 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 56/171 (32%), Gaps = 10/171 (5%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS----KGDLAVGMVV 61
           L  I    +   + GI+ M            V      K +  +I+    K D+  G ++
Sbjct: 2   LFIISFLTLVVGIGGILFMPTSGDGEDSQTFVTQPQVEKKVEKVITIAELKRDVKKGTLL 61

Query: 62  TPNILEWVAFPEENVFD---GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118
             +                   + +V   ++   L G L+   +  G  +    ++   +
Sbjct: 62  QSDDYAISQVTVSEDNPLINNDLSNVLANSSSHSLQGYLIGDNLSSGSLLSNMMIIAPDD 121

Query: 119 GG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
               +SS+  K + A  + I S    +   I   D+V +   ++  + +  
Sbjct: 122 PRFLMSSIDTKQEVAYRIYIKSDERYLLDTIHSGDYVSIYNQKNALDSRNI 172


>gi|218289538|ref|ZP_03493766.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218240406|gb|EED07588.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 235

 Score = 55.9 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 75/251 (29%), Gaps = 47/251 (18%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK      +  +     V G IA                        V +++  +     
Sbjct: 1   MKSWVRYTLATTLFVVGVGGSIAYNQF-----------VAPILTSEWVYVARTQMPADTP 49

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +    +E +  P+  V    I +         L G     P+ +        L       
Sbjct: 50  IQATDVERIRVPKSEVSPDAITNAEG------LIGAYTAQPVDQNQV-----LTALDTEP 98

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV--------LS 172
               +  G     +  +  ++V   ++  D+VD++ +         V             
Sbjct: 99  DPFTITPGTEDVPIPSTWIASVSETLRQGDYVDLIPIAEPQAGSNNVGTFTTTSEASEFK 158

Query: 173 NIRVIAIDHNIDS----------------DERVLVGSTATLELTPMQAKALVAAQSVAKL 216
           ++ V+++  + ++                     V ++  +++T  +A+AL +     K 
Sbjct: 159 HLLVLSVHTDNNAEVTSQQTGAPQSVGARGNGSGVPASVDVKMTSAEAQALASLIQQ-KY 217

Query: 217 SLVLRSIADLN 227
            L++  ++D N
Sbjct: 218 QLLIVGVSDDN 228


>gi|297626968|ref|YP_003688731.1| hypothetical protein PFREUD_18030 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922733|emb|CBL57311.1| Hypothetical protein PFREUD_18030 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 211

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 67/195 (34%), Gaps = 19/195 (9%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
           V     +  + +    V+I+   LA G+ V  + +  +  P E      + D        
Sbjct: 31  VAVLTALDPSASSSHTVVIASRPLAAGVAVGADDVTTLQVPAEVATSATLADP------G 84

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
              G +V VP   G  +     V +G    S     G       I     V G++   + 
Sbjct: 85  AAIGQVVAVPRPAGTVLTSSDFVGKGLVADS----DGLTLVPFRIEDK-GVAGVLGVGNQ 139

Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID----SDERVLVGSTATLELTPMQAKAL 207
           + VV     ++      V+ S +R+ A+          D     G+   +      A+ L
Sbjct: 140 ISVVGANPGAD----TRVIASRVRIAALPSPGSSGALDDSSSSSGALVIVAADSHTAREL 195

Query: 208 VAAQSVAKLSLVLRS 222
            AA S   LS+VL S
Sbjct: 196 AAAASEYTLSVVLES 210


>gi|90409527|ref|ZP_01217563.1| hypothetical protein PCNPT3_13790 [Psychromonas sp. CNPT3]
 gi|90309368|gb|EAS37617.1| hypothetical protein PCNPT3_13790 [Psychromonas sp. CNPT3]
          Length = 84

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
           S  TLE+ P QA  ++ A  +  LS++LR+ +D +  ++   D+ D+  E K++Q
Sbjct: 6   SAVTLEVLPAQANTVILANQLGTLSMLLRNSSDNSILANTQVDIGDIFPEIKQVQ 60


>gi|253576735|ref|ZP_04854062.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843945|gb|EES71966.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 318

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 73/225 (32%), Gaps = 45/225 (20%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAM-------------RLVSPHHVQTEEVITENPAKFINV 48
           K  +++   + GV A  A                   L+  +  Q   +  +   + +  
Sbjct: 7   KTKQMLLSGLVGVVAAGALFTGYTFVRERHVHAERKALIQDYEAQLASLRDQAQQRTVQG 66

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
            +   D+  G  +  + L+ V  P  +V            + + + G   ++ +    P+
Sbjct: 67  WVPTRDIPAGNRIAASDLKRVELPANSVPADLFK------SQEAIAGKYAKIALRSMTPL 120

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168
               + +       + +P   R           +  ++K ND +D+ +            
Sbjct: 121 TEALVYEE------APVPDDLRW---REMAFVQLPQVLKVNDVIDIRIQFPTGHD----Y 167

Query: 169 VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213
           ++LS  +V  +  +             T+ +T  +A+ L  + ++
Sbjct: 168 ILLSKKKVADLSSD-------------TITVTLDEAEILSLSSAI 199


>gi|41407019|ref|NP_959855.1| hypothetical protein MAP0921c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395370|gb|AAS03238.1| hypothetical protein MAP_0921c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 226

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 65/188 (34%), Gaps = 13/188 (6%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
            ++    +  V++++ DL  G  +T   +         V +G       P  +  + G  
Sbjct: 46  RSDPAGDYAPVVVAEHDLRPGAALTAADVRLEKRLAATVPEG------SPAEIGAVLGST 99

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLS--SLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
           +  P  +G+ +   +L+       +  S    G R   +      A+  +++P D VDV+
Sbjct: 100 LAGPARRGEVLTDVRLLGSRLAEAAVGSKAAAGARIVPLH-PADGALIDLVRPGDVVDVL 158

Query: 156 MVR---SLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212
                 S         V+ ++  V+ +    +  +         + L    A  +  A  
Sbjct: 159 AAPANTSAETTHAAPKVLATDAVVVLV-SAREKIQAAGADRVVLVALPAGVANTVAGAAL 217

Query: 213 VAKLSLVL 220
              ++L L
Sbjct: 218 GQTVTLTL 225


>gi|163846486|ref|YP_001634530.1| SAF domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222524269|ref|YP_002568740.1| SAF domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163667775|gb|ABY34141.1| SAF domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448148|gb|ACM52414.1| SAF domain protein [Chloroflexus sp. Y-400-fl]
          Length = 269

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 65/243 (26%), Gaps = 61/243 (25%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   L  I++     + A    +  +     +              V+I   D+  G  +
Sbjct: 15  RSNPLPAILIGLGLLITAVFTVIAFLEASRSE-------------PVVILARDVPYGQQI 61

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           + + L  V  P           +   ++     G      +   D ++   L++      
Sbjct: 62  SADDLAVVLLPRHRP-----VQLTGISSPALAVGQYAARHLAANDLLQPSMLMEHAPTQP 116

Query: 122 SS----LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---------------- 161
                  L  G  A            G +   D V++                       
Sbjct: 117 VYPNGEALTPGMVAVPFSTETI----GPLTHRDRVNIGFSDPNGSPDVCDQARQAAAGRE 172

Query: 162 ----------ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
                     + +P    +LS  RV+ +D              A LELTP Q+  + A Q
Sbjct: 173 PTVNPPDSPLQPRPYACRLLSGARVLYVD---------GEAGIAYLELTPYQSHVIQAVQ 223

Query: 212 SVA 214
           +  
Sbjct: 224 AAG 226


>gi|254773979|ref|ZP_05215495.1| hypothetical protein MaviaA2_04794 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 226

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 65/188 (34%), Gaps = 13/188 (6%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
            ++    +  V++++ DL  G  +T   +         V +G       P  +  + G  
Sbjct: 46  RSDPAGDYAPVVVAEHDLRPGAALTAADVRLEKRLAATVPEG------SPAEIGAVLGST 99

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLS--SLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
           +  P  +G+ +   +L+       +  S    G R   +      A+  +++P D VDV+
Sbjct: 100 LAGPARRGEVLTDVRLLGSRLAEAAVGSKAAAGARIVPLH-PADGALIDLVRPGDVVDVL 158

Query: 156 MVR---SLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212
                 S         V+ ++  V+ +    +  +         + L    A  +  A  
Sbjct: 159 AAPANTSAETTHAAPKVLATDAVVVLV-SAREKIQAAGADRVVLVALPAGVANTVAGAAL 217

Query: 213 VAKLSLVL 220
              ++L L
Sbjct: 218 GQTVTLTL 225


>gi|84498693|ref|ZP_00997446.1| hypothetical protein JNB_16856 [Janibacter sp. HTCC2649]
 gi|84381030|gb|EAP96917.1| hypothetical protein JNB_16856 [Janibacter sp. HTCC2649]
          Length = 191

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 58/180 (32%), Gaps = 20/180 (11%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
              P    + L++  DL  G V+T + L       E+   G +        +++L G L+
Sbjct: 12  RPPPPPTTSALVAARDLPSGAVLTADDLRTTQIRGESDSPGTV---GAVGRVRDLVGRLL 68

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
             P+  G+ +   +LV       +  LP    AA +  +   ++  ++     V +    
Sbjct: 69  TSPVAAGELVTTSRLV---PRTAAEGLPGDTVAAHVLHADERSL-DLVSAGQRVTLFA-- 122

Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSD------ERVLVGSTATLELTPMQAKALVAAQS 212
                      + +++ V+ +D                      + L       + A Q 
Sbjct: 123 -----DTGGEPLATDVLVLGVDTPETPALTGSLPTSGSPPRGLVIALPHTALDRVFAGQR 177


>gi|62389769|ref|YP_225171.1| hypothetical protein cg1002 [Corynebacterium glutamicum ATCC 13032]
 gi|21323646|dbj|BAB98273.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
 gi|41325104|emb|CAF19585.1| putative secreted protein [Corynebacterium glutamicum ATCC 13032]
          Length = 217

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 39/225 (17%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   L  I+   +  +   ++A   +                     ++   ++  G  V
Sbjct: 14  RTLVLRRIIAFILIGIAGLLMAHSWLKKDPTA---------------VVIVQEIPAGTKV 58

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG---- 117
             + L   A P   +           +++ ++ G++    +  G+     + V       
Sbjct: 59  EASDLGLQAIPTSLLPSTSY------DSIDDVVGLVAASTLSSGEIATKPRFVGTELINS 112

Query: 118 --NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
                  S L +      + ++  S +  +++  D + VV   S          + +   
Sbjct: 113 IATNVTDSSLVEEINMVPLSLAEPSVIP-LLQHGDTISVV---SQDPDTGLPENIAAGGT 168

Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           VI               ST  + L    A+ + A      L++VL
Sbjct: 169 VILAG--------GTDPSTILIALPQSIAEKVAAQSLNTPLAVVL 205


>gi|326331487|ref|ZP_08197777.1| putative membrane protein [Nocardioidaceae bacterium Broad-1]
 gi|325950743|gb|EGD42793.1| putative membrane protein [Nocardioidaceae bacterium Broad-1]
          Length = 224

 Score = 54.4 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 60/180 (33%), Gaps = 16/180 (8%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                 +VL+++  +  G ++  + ++ +    +   +         ++  ++ G    +
Sbjct: 56  ATTDTQDVLVARHTIERGSLIEADDIKRIQISADPALE-----ALPGSSYGDVIGKKAGL 110

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            I  G  +  E          S + P G     + ++ S +    ++  D V VV+  + 
Sbjct: 111 DIAAGALLTEE------ATTSSPMPPDGMSVVGLALATSHSPAVNLRTGDRVRVVVTPAE 164

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
               P  T   +   V+A        +         + +    A  L +  +   + +VL
Sbjct: 165 GAEAPAGTPEFTEAEVVA-----ARADDTSGMFLVDVLVPYADAPVLASRAASGNVGIVL 219


>gi|212716655|ref|ZP_03324783.1| hypothetical protein BIFCAT_01588 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660359|gb|EEB20934.1| hypothetical protein BIFCAT_01588 [Bifidobacterium catenulatum DSM
           16992]
          Length = 229

 Score = 54.4 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 67/209 (32%), Gaps = 31/209 (14%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71
           + V A +A   A++ V                    V+I+   +A G V+T + L     
Sbjct: 42  AAVCAGLAVFAALQCVRLT------------ISTQPVVIAAQPIAKGSVITADSLALRDL 89

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRA 131
           P +        D        +  G++ +V + +G  +             S ++P+G  A
Sbjct: 90  PYDEALRNVFHDCD------DAVGLIAQVDVAEGGIVTSTM------ARASPVVPEGYTA 137

Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV--IAIDH--NIDSDE 187
             + ++ S      +   D V +       E  P  +     + +  +            
Sbjct: 138 IEVRLASS---ADNLSLGDIVTLSSATIFGEATPEASPDTDAVTLRELCSGAILTAKPSR 194

Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKL 216
                + A   + P +A  ++ AQ  + +
Sbjct: 195 DADGNTLAVFAMPPHEAATVLQAQEYSAI 223


>gi|284045239|ref|YP_003395579.1| hypothetical protein Cwoe_3787 [Conexibacter woesei DSM 14684]
 gi|283949460|gb|ADB52204.1| hypothetical protein Cwoe_3787 [Conexibacter woesei DSM 14684]
          Length = 230

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 18/213 (8%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88
               + E  + +      +VL+++  +A G  +        + P        + D    +
Sbjct: 23  SSVQRREAALGQALGPLTHVLVTRAPVAAGAPLADARPALRSLPRRYAPPDALTDPAVLD 82

Query: 89  AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148
                 G    V +  G  +    L        +  + +G+R A +   ++      I  
Sbjct: 83  ------GAQAAVALPVGAYVTGASLRTPAAA--AVPVGRGERVAEV---VALGDPESIVA 131

Query: 149 NDHVDVVMVRSLSERKPTVTVV-LSNIRVIAIDHNI-----DSDERVLVGSTATLELTPM 202
              VDV++ R     +P  TV+ L ++ V+A            D        A+L +T  
Sbjct: 132 GSRVDVLVTRDTDGDRPGETVLALEDVEVLAAAAPPAAEIGADDAGAGARVAASLRVTVR 191

Query: 203 QAKALVAAQSVAK-LSLVLRSIADLNPSSSEDS 234
           QA  L AAQS A+ L L+ R+  D     +  +
Sbjct: 192 QAVYLAAAQSFARELRLLPRAPQDRARGRAGLA 224


>gi|118465730|ref|YP_880352.1| hypothetical protein MAV_1099 [Mycobacterium avium 104]
 gi|118167017|gb|ABK67914.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 226

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 13/194 (6%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
                + ++    +  V++++ DL  G  +T   +         V +G       P  + 
Sbjct: 40  AAIAALRSDPAGDYAPVVVAEHDLRPGAALTAADVRLEKRLAATVPEG------SPAEIG 93

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGGLS--SLLPKGKRAATMDISISSAVGGMIKPN 149
            + G  +  P  +G+ +   +L+       +  S    G R   +      A+  +++P 
Sbjct: 94  AVLGSTLAGPARRGEVLTDVRLLGSRLAEAAVGSKAAAGARIVPLH-PADGALIDLVRPG 152

Query: 150 DHVDVVMVR---SLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKA 206
           D VDV+      S         V+ ++  V+ +    +  +         + L    A  
Sbjct: 153 DVVDVLAAPANTSAETTHAAPKVLATDAVVVLV-SAREKIQAAGADRVVLVALPAGVANT 211

Query: 207 LVAAQSVAKLSLVL 220
           +  A     ++L L
Sbjct: 212 VAGAALGQTVTLTL 225


>gi|125973145|ref|YP_001037055.1| hypothetical protein Cthe_0627 [Clostridium thermocellum ATCC
           27405]
 gi|256003941|ref|ZP_05428927.1| SAF domain protein [Clostridium thermocellum DSM 2360]
 gi|281417338|ref|ZP_06248358.1| SAF domain protein [Clostridium thermocellum JW20]
 gi|125713370|gb|ABN51862.1| hypothetical protein Cthe_0627 [Clostridium thermocellum ATCC
           27405]
 gi|255992069|gb|EEU02165.1| SAF domain protein [Clostridium thermocellum DSM 2360]
 gi|281408740|gb|EFB38998.1| SAF domain protein [Clostridium thermocellum JW20]
 gi|316940628|gb|ADU74662.1| hypothetical protein Clo1313_1601 [Clostridium thermocellum DSM
           1313]
          Length = 291

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 63/190 (33%), Gaps = 32/190 (16%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGD--LAVGMV 60
             +L+ I VS    + + I                + ++    +++++ K    +    +
Sbjct: 16  PKKLLAIFVSVAVIIGSFIYLNS------------VNDSAKDTVDIVVVKASGGIPANTL 63

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGN 118
           +T + +   +   +   D  I      + +  +        +  G PI  ++L D    +
Sbjct: 64  ITKDNIGKYSIIRKEFNDDMIT----YDKVDSILNKYSLYYLRNGAPIYYDQLTDEKPRD 119

Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------------LSERKPT 166
                 L +     T+        G +++P D V V +  +             S++   
Sbjct: 120 TEWLYDLEENYEVLTIKYDYLECGGSILRPGDLVRVRVTYTEEIPSSDGMMYGGSKKVKK 179

Query: 167 VTVVLSNIRV 176
             ++  +IRV
Sbjct: 180 TEILFDSIRV 189


>gi|326773108|ref|ZP_08232392.1| flp pilus assembly protein CpaB [Actinomyces viscosus C505]
 gi|326637740|gb|EGE38642.1| flp pilus assembly protein CpaB [Actinomyces viscosus C505]
          Length = 261

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 46/134 (34%), Gaps = 13/134 (9%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +    +    +    V+   P +   VL++   ++ G ++T   +     P   +    +
Sbjct: 1   MVALCLGTAVLVALSVLRPGPQRGQQVLVASHAISAGAILTDQDVSISTLPTGALPQSPL 60

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA 141
                  + ++  G    + + KG  +         +G L+  L   +R   + I     
Sbjct: 61  T------STEQAVGNRAAISLEKGTVLTASM----TSGSLAQQLGDDERLVQVAID---V 107

Query: 142 VGGMIKPNDHVDVV 155
              + +P   VD++
Sbjct: 108 GAELARPGARVDII 121


>gi|291529651|emb|CBK95237.1| SAF domain [Eubacterium rectale M104/1]
          Length = 273

 Score = 53.6 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 93/256 (36%), Gaps = 38/256 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M  +    +V   V  +  G   +  V  + +  + V         +V+I+  D+  G +
Sbjct: 17  MNKSLTKALVAILVAII--GWTGLTFVESYILTDKNV--------TSVVIASADIPQGTI 66

Query: 61  VTPNI----LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           +T +      +      + V    + D+      + ++G  +   +  G+ +  ++  + 
Sbjct: 67  ITKDNAENYFKKENVNSDLVTKSTVTDI------KSIEGKFL-TNVAAGEIVTSDRYYET 119

Query: 117 GNGGLSSLLPKGKRAATMDI---SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173
            +          K   ++     S  ++V G I+  D VD+    + ++      +   N
Sbjct: 120 KDT------RDLKNPVSLTFAAGSAENSVNGTIRGGDIVDIYTSVTTNDVVTY-QLAREN 172

Query: 174 IRVI-AIDHN---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229
           + +  A D +   IDS ++  V ST  ++L    A     A S   L +V     D+N  
Sbjct: 173 VYIENAYDSSYVKIDSADQATVASTFLVKLDEDDAANFKNAISQGDLLMV---KKDINQK 229

Query: 230 SSEDSDVWDVQEEGKE 245
            +    +    E+  E
Sbjct: 230 DTASVIIPAKTEKTVE 245


>gi|304405122|ref|ZP_07386782.1| SAF domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304346001|gb|EFM11835.1| SAF domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 240

 Score = 53.6 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 55/166 (33%), Gaps = 15/166 (9%)

Query: 34  TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93
             +         + +++ K  +A G  +    L + +  +  V    + ++ + +  + +
Sbjct: 26  AVQARQLEGKDMVRIVVPKRFIAAGERLEAADLTYRSIAKSAVQQDMVLELVEADGWEAV 85

Query: 94  DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
                  P+   +P+   KL          L  + +    +  S   +V   I+  D V 
Sbjct: 86  V------PLGAEEPLLKWKLDRYR-----LLPDQSQSTFQIPRSYVLSVSNGIRAGDLVV 134

Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLE 198
           + M            +    ++V ++    +++ +     +  +L 
Sbjct: 135 LYMSGEADSS---SRLFDKPVKVASVKSAANTEVDDSDQSNLLSLA 177


>gi|296169796|ref|ZP_06851411.1| SAF domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895590|gb|EFG75289.1| SAF domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 225

 Score = 53.6 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 68/191 (35%), Gaps = 13/191 (6%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
             +       + +V+++  DL  G  +TP  +         + DG + DV        + 
Sbjct: 42  AALRANPAGDYADVVVADHDLRPGAALTPADVRLEKRLATTLPDGALADVS------AVA 95

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLL--PKGKRAATMDISISSAVGGMIKPNDHV 152
              +  P  +G+ +   +L+       +  L    G R   + ++  SA+  +++  D V
Sbjct: 96  NSTLTGPARRGEVLTDVRLLGSRLADAAIALKAGPGARLVPLRLAD-SALIELVRVGDVV 154

Query: 153 DVV---MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209
           DV+      +    +    VV ++  V+ +     + +         + L    A  +  
Sbjct: 155 DVLAAPAAGTPGTPQAVPRVVATDAVVVLVSAKPKA-QAADGDRVVLVALPARVANTVAG 213

Query: 210 AQSVAKLSLVL 220
           +     ++L L
Sbjct: 214 SALGQAVTLTL 224


>gi|225351088|ref|ZP_03742111.1| hypothetical protein BIFPSEUDO_02674 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158544|gb|EEG71786.1| hypothetical protein BIFPSEUDO_02674 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 229

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 69/219 (31%), Gaps = 31/219 (14%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +    +  +++ V A +A   A++ V                    V+I+   +A G V+
Sbjct: 32  RKNARLHRLLAAVCAGLAMFAALQCVRLT------------ISTQPVVIAAQPIAKGSVI 79

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T + L     P +        D        +  G++ +V + +G  +             
Sbjct: 80  TADSLALRDLPYDKALRNVFHDCA------DAVGLIAQVDVAEGGIVTSTM------ARA 127

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV--IAI 179
           S ++ +G     + ++ S      +   D V +       E  P  +     + +  +  
Sbjct: 128 SPVVSEGYTVIEVRLASS---ADNLSLGDVVTLSSATIFGEATPETSPDTDAVTLRELCS 184

Query: 180 DH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
                          + A   + P +A  ++ AQ  + +
Sbjct: 185 GAILTAKPSRDADGNTLAVFAMPPHEAATVLQAQENSAI 223


>gi|308235642|ref|ZP_07666379.1| hypothetical protein GvagA14_05378 [Gardnerella vaginalis ATCC
           14018]
 gi|311115187|ref|YP_003986408.1| hypothetical protein HMPREF0421_21303 [Gardnerella vaginalis ATCC
           14019]
 gi|310946681|gb|ADP39385.1| hypothetical protein HMPREF0421_21303 [Gardnerella vaginalis ATCC
           14019]
          Length = 223

 Score = 53.2 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 82/220 (37%), Gaps = 44/220 (20%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   L+   ++  F  VA +IA+ +++               +   + ++  D++ G ++
Sbjct: 29  RQKALLLNALTIFFISVATLIAINMITSCQ------------ETQIIPVAIRDISKGTLI 76

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L +V  P+ +VF+  I+     NA+      +    I  G PI   ++  +     
Sbjct: 77  KQDDLSYVNVPKNSVFNHVINKDLIKNAI------IATCNIKYGMPIFTSQITQQ----- 125

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN-------- 173
            + +P G    ++ ++ ++     +   +++ +   +          +V  N        
Sbjct: 126 -AKIPPGFTTISIKLASNN---QDLNIGENISIAFSKVSRGDHNENDIVQENKNISFIHD 181

Query: 174 IRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213
           + V+   ++  +         A L +    A  ++  QS+
Sbjct: 182 VIVVKTGNSSQN---------ALLAMPAESALQIINTQSI 212


>gi|254478253|ref|ZP_05091634.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035849|gb|EEB76542.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 181

 Score = 53.2 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 30/181 (16%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            I ++ + A V+    +  +                K   V+I + D+  G V++ + ++
Sbjct: 4   IIKIALITATVSAAFMLVFMQNIQ------------KTEKVVIVEKDIPAGTVISEDAVK 51

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127
            +  P   V   +           ++ G +V+   ++GD I +E L  +     S  L  
Sbjct: 52  VIDVPASVVNPDYARSPA------DVVGKVVKEGRVRGDFIPVEILTSKD----SQPLGP 101

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE 187
                T+ I+        ++  D V  V+      R      +L   +VI++        
Sbjct: 102 DHAVMTVPITSVE--AKTLQSGDTVSFVVFDQTGSR------ILDGFKVISVVKEDSDKA 153

Query: 188 R 188
            
Sbjct: 154 S 154


>gi|163840370|ref|YP_001624775.1| hypothetical protein RSal33209_1625 [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953846|gb|ABY23361.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 214

 Score = 53.2 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 17/180 (9%)

Query: 42  PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101
             K ++V  +K D+AVG  +   +LE V    + V D +                +    
Sbjct: 42  ADKTVDVYAAKSDIAVGHTINQELLERVKVRLDEVQDHYFLASDIFPG-----NAVAARR 96

Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           I  GD +    +        + + P  +    +            K    VDV +    +
Sbjct: 97  IPHGDLVAKSSVDQPQALARNPVAPTLEEKLPIGA----------KVGSRVDVWVSLPDA 146

Query: 162 ERKPTVT--VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           +    V   ++L  + +  +D   +        +   L   P   + L A  S AK+S+V
Sbjct: 147 KTGGFVEPRLLLPGVEISQLDSESNGLGSARTTTVYVLAGKPQLPQILGALASKAKVSVV 206


>gi|167039378|ref|YP_001662363.1| SAF domain-containing protein [Thermoanaerobacter sp. X514]
 gi|300914019|ref|ZP_07131336.1| SAF domain protein [Thermoanaerobacter sp. X561]
 gi|307725296|ref|YP_003905047.1| SAF domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166853618|gb|ABY92027.1| SAF domain [Thermoanaerobacter sp. X514]
 gi|300890704|gb|EFK85849.1| SAF domain protein [Thermoanaerobacter sp. X561]
 gi|307582357|gb|ADN55756.1| SAF domain protein [Thermoanaerobacter sp. X513]
          Length = 181

 Score = 53.2 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 67/186 (36%), Gaps = 32/186 (17%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++R++ I +       A ++                 +N  K   V+I + D+  G V++
Sbjct: 1   MSRIIKIALITAAVSAAFMLVF--------------MQNIQKTEKVVIVEKDIPAGTVIS 46

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            + ++ V  P   V   +        ++ ++ G +V+   ++GD I +E L  +     +
Sbjct: 47  EDAVKVVDIPASAVRPDYAR------SLTDVVGKVVKEGRVRGDFIPVEILTSKD----A 96

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
             L       T+ ++        ++  D V  ++      +      VL   +VI++   
Sbjct: 97  EALGPDHAVMTVPVTSVE--AKTLQSGDTVSFIVFDQTGSK------VLDGFKVISVVKE 148

Query: 183 IDSDER 188
                 
Sbjct: 149 DSDKAN 154


>gi|145295050|ref|YP_001137871.1| hypothetical protein cgR_0993 [Corynebacterium glutamicum R]
 gi|140844970|dbj|BAF53969.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 217

 Score = 53.2 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 43/227 (18%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   L  I+   +  +   ++A   +                     ++   ++  G  V
Sbjct: 14  RTLVLRRIIAFILIGIAGLLMAHSWLKKDPTA---------------VVIVQEIPAGTKV 58

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV------- 114
             + L   A P   +           +++ ++ G++    +  G+     + V       
Sbjct: 59  ESSDLGLQAIPTSLLPSTSY------DSIDDVVGLVAASTLSSGEIATKPRFVGTELINS 112

Query: 115 -DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173
                   S +        ++      +V  +++  D + VV   S          + + 
Sbjct: 113 IVTNVTDGSLVEEINMVPLSL---AEPSVIPLLQHGDTISVV---SQDPDTGLPENIAAG 166

Query: 174 IRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
             VI               ST  + L    A+ + A      L++VL
Sbjct: 167 GTVILAG--------GTNPSTILIALPQSIAEKVAAQSLNTPLAVVL 205


>gi|312794261|ref|YP_004027184.1| SAF domain-containing protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181401|gb|ADQ41571.1| SAF domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 194

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 76/220 (34%), Gaps = 31/220 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK      I ++ + A++  +++   +S                 I V ++K  +  G +
Sbjct: 1   MKNR---IIKLAVIPAVLVALLSYIFISRQ------------TNMIQVPVAKNLIHQGEI 45

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  N + ++  P   +  G + +       ++L G    V  + GD    + +       
Sbjct: 46  IDDNDITFLKLPSYALPPGTVKE------KEQLVGKRAGVTRVAGDFFYDDVI-----KS 94

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +   + + +    +++     +   I     + ++   S S        V  N  V++I 
Sbjct: 95  VYVQVYEDETLICVNVPEP--LTRFITEGTKL-IIATTSTSNSGVPPFAV-ENAEVVSIL 150

Query: 181 HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
               S+         A +++   QA  L ++      +++
Sbjct: 151 SKTTSNTVSSTNTRYAIVKVKRDQAVQLASSLKSGDYTVI 190


>gi|254478346|ref|ZP_05091725.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035704|gb|EEB76399.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 181

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 66/186 (35%), Gaps = 32/186 (17%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++R++ I +       A ++                 +N  K   V++ + D+  G V++
Sbjct: 1   MSRIIKIALITAAVSAAFMLVF--------------MQNIQKTEKVVVVEKDIPAGTVIS 46

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            + ++ +  P   V            ++ ++ G +V+   ++GD I +E L  +     +
Sbjct: 47  EDAVKIIDVPASAV------RPEYARSLTDVVGKVVKEGRVRGDFIPVEILTSKD----A 96

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
             L       T+ ++        ++  D V  ++      +      VL   +VI++   
Sbjct: 97  QPLGPDHAVMTVPVTSVE--AKTLQSGDTVSFIVFDQTGSK------VLDGFKVISVVKE 148

Query: 183 IDSDER 188
                 
Sbjct: 149 DSDKAS 154


>gi|308069314|ref|YP_003870919.1| SAF domain protein [Paenibacillus polymyxa E681]
 gi|305858593|gb|ADM70381.1| SAF domain protein [Paenibacillus polymyxa E681]
          Length = 328

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 46/164 (28%), Gaps = 24/164 (14%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---------NVLISKGDLAVGM 59
           I    V    AG + + +   + V+ +  +       +                D++ G 
Sbjct: 17  IGAGIVGIFFAGYLMINIHQMNEVRKQAEVEAEQKWKVYEQEQRTAKKGWAVVRDISPGE 76

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
            +  N L+ +  P        + D        E+ G   ++ + KG  +    +      
Sbjct: 77  QIASNDLKGIKVPSSQTPSNLLTDKS------EVSGTTAKIELKKGSVLTSAMITADEPT 130

Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
                  + K            +   +K  D VD+ +     + 
Sbjct: 131 PKDLRNRELKVVV---------LPNNLKSGDEVDIRIQFPTGQD 165


>gi|218290594|ref|ZP_03494696.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239378|gb|EED06575.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 261

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 52/158 (32%), Gaps = 23/158 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M +     + +      VA  +   ++   +              + V ++   +     
Sbjct: 1   MAMVSKATMALGLCGIGVAVWLDWMVLERANA------------TVQVPVAAQTIPPYTT 48

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + + W + P   +    + +           G L  + +  GDPI   +L  +G+  
Sbjct: 49  ITSSDITWKSIPRNALPSDLVTNP---------VGRLTVLGVAAGDPIESSELAAQGSLQ 99

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
            +    +      +++S S  +   + P   V +V+  
Sbjct: 100 -AYAASQDDVLVPVNVSPSP-ITEAVTPGATVTLVVNG 135


>gi|256824730|ref|YP_003148690.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547]
 gi|256688123|gb|ACV05925.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547]
          Length = 219

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 18/164 (10%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
            ++  DL  G V+    L  V   E +  +G        + + +  G +V  P+ +G+ +
Sbjct: 47  WVAAADLPTGHVLGSEDLRPV---EGSSPEGVYLTGD--DPLADRAGQVVLRPVGQGEFL 101

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---LSERKP 165
            +  L       L        R  ++++S        + P   VD+          +++P
Sbjct: 102 PVADLGGADRLDL--------RRVSLEVSP--GSAATLSPGSVVDLWATPRAVAGEKKRP 151

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209
           T   VL+   V  +    D              ++  Q + L+A
Sbjct: 152 TPRQVLAGAEVARVQEAGDRLAGGDQTVAVDFLVSTDQVEELLA 195


>gi|318058041|ref|ZP_07976764.1| hypothetical protein SSA3_08873 [Streptomyces sp. SA3_actG]
 gi|318081071|ref|ZP_07988403.1| hypothetical protein SSA3_31325 [Streptomyces sp. SA3_actF]
          Length = 243

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 19/192 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                ++V+ +  D+  G  ++ +    +   ++        D       +   G     
Sbjct: 56  QAGDRVSVVRTTKDIPAGGSLSRDNTTDILVAKDESIHYLNWDQIDLAKSKYKLG----S 111

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV----- 155
            + KG  +  E L+ +      S++ +GK    + +      GG +KP D V V      
Sbjct: 112 ALPKGSLVVGEMLIAKDK----SVVDEGKALVGLALQEGQYPGG-LKPGDTVAVYHVGKD 166

Query: 156 ----MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAA 210
                           T++ +   V   D +    E       T T+ +   +A+AL  A
Sbjct: 167 AGAPASGESDSSAGNRTLLSAQADVKDADGSSKGGEALSTGDRTLTVSVPASEAQALAQA 226

Query: 211 QSVAKLSLVLRS 222
            SV ++++VL  
Sbjct: 227 SSVGEVAVVLVP 238


>gi|256372256|ref|YP_003110080.1| hypothetical protein Afer_1484 [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008840|gb|ACU54407.1| hypothetical protein Afer_1484 [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 231

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 78/238 (32%), Gaps = 45/238 (18%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R + + ++G  AL A +                     ++ ++++++   L  G V 
Sbjct: 5   RQRRSVALKIAGTVALGAAVTLGVYSFFS----------KQSQTVDIVVAAKPLVPGEVP 54

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T + L   A P+++V  G I        ++ L+  +V   I +  P+ + +L     G  
Sbjct: 55  TKSDLAVEAVPQQSVTPGMI----PVANVRVLNNQVVTTTIPQNAPVLVSELAPHLRGN- 109

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT------------- 168
                       + +   S +   +   D VD+           +               
Sbjct: 110 ----------YRVFVLTPSVIPPNLTAGDTVDIYAPLQAQASGSSSGSSNAPMSYTAPAP 159

Query: 169 --VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
              V + I V+A+  + +     L      +E+ P +A  + A    + L +      
Sbjct: 160 YIPVATAIPVLAVIPSSNGGSSQLE-----IEVPPNEASDIAAVADTSNLVIAFAPPN 212


>gi|261406226|ref|YP_003242467.1| SAF domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261282689|gb|ACX64660.1| SAF domain protein [Paenibacillus sp. Y412MC10]
          Length = 367

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 55/178 (30%), Gaps = 31/178 (17%)

Query: 2   KLTRLMGIVVSGVF---ALVAGIIAMRLVSPHH-------------VQTEEVITENPAKF 45
           +  +L+   ++G     A+ AG +   +                   + EE   +     
Sbjct: 7   RSRKLIFAGLAGAAVTGAVCAGAMLYYVHGSKEQRHVERTQYEQRIAELEETQLQQLNSM 66

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
               +   D+  G  +    ++ V  P +          +  +  +E+ G   ++ +L+G
Sbjct: 67  QAAWVPVRDIPPGHFIEAKDIKEVRLPYDG------TSGNLFSGREEIAGKGAKIELLQG 120

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
            PI    L +           +  ++  +           ++  D +DV +     + 
Sbjct: 121 MPITGAMLFEEEPTRPDLRHRE-MKSVYLPSD--------LRKGDVIDVRVQFPTGQD 169


>gi|323702231|ref|ZP_08113897.1| SAF domain-containing protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323532721|gb|EGB22594.1| SAF domain-containing protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 212

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 63/192 (32%), Gaps = 31/192 (16%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++R  GI+ + V A+V   +     +  +            K   V  +   +  G  + 
Sbjct: 1   MSRKWGIITALVIAIVFTTLVGVSSNHKYAAAT--------KPTKVYQAAKFIPQGTTIK 52

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            + ++ V FPE           +     +E+ G    V +LK   I    +         
Sbjct: 53  ESDIKEVDFPESL-------SSNLIKDKKEIVGKGAVVSMLKDQKIYKGSVSPGAGK--- 102

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
                G     +   +S +   +  P ++V+++ V            +  N  V     +
Sbjct: 103 ---RPGFVEILIPTDLSKSALAL--PGEYVNLIPVDDSG-----TQPLYVNALV---KRS 149

Query: 183 IDSDERVLVGST 194
           +D+D   +  ST
Sbjct: 150 LDNDGNDIDPST 161


>gi|258652943|ref|YP_003202099.1| SAF domain-containing protein [Nakamurella multipartita DSM 44233]
 gi|258556168|gb|ACV79110.1| SAF domain protein [Nakamurella multipartita DSM 44233]
          Length = 224

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 18/173 (10%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
               +   V++ K D+A+G V+    L  V         G +  +   N +  + G    
Sbjct: 56  TKAGQKTPVVVVKSDIAMGEVIERADLSTVEV------AGGVTAIAGAN-LDSVVGQRAA 108

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           V ++ G  ++   L    +      +P G     + ++      G +   D V V+ +  
Sbjct: 109 VGLMTGTLLQRSMLTQDHS------MPDGMVQVGVAVTGGRLPAGGVTTGDRVQVLALPE 162

Query: 160 LSERKPTV-TVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211
                     VV  +  + A       D     G   T+ +   +A  +  A 
Sbjct: 163 AGGTGTAAPKVVAKDAEIFA----AMEDPTRAGGFLLTVLVPADEAAGVAGAS 211


>gi|311111727|ref|YP_003982949.1| SAF domain-containing protein [Rothia dentocariosa ATCC 17931]
 gi|310943221|gb|ADP39515.1| SAF domain protein [Rothia dentocariosa ATCC 17931]
          Length = 218

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +      +K D+++G  +TP++L        +  D ++      +        +    I 
Sbjct: 36  QTYTYYTAKNDISIGQKITPDMLIEKQVNLGDSKDRYLSREQLESGKY-----IAVRQIP 90

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
            G+ I         +   +  + + +R  T+ +     +    K  + VD+ ++ S  E+
Sbjct: 91  AGELIS--------SASANENIQERRRLVTVTLD--RGIASTFKAGERVDIWVISSGKEK 140

Query: 164 KPTVT 168
           +    
Sbjct: 141 QKVPE 145


>gi|134298691|ref|YP_001112187.1| SAF domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134051391|gb|ABO49362.1| SAF domain protein [Desulfotomaculum reducens MI-1]
          Length = 270

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 77/246 (31%), Gaps = 42/246 (17%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           L  +  ++V       +       V  H  + +  + +                   ++ 
Sbjct: 14  LKTIFIVLVGIGVTAGSVGQLQTWVDTHQEKVKVPVVKQKVTQ------------YSMIG 61

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
           P ++E     +       +        +QE++G +    ++ G+ IR +KL +       
Sbjct: 62  PGMIEMQDKLKLAADPYAVKT------LQEIEGKVAVTDLIPGEQIRPDKLANTD----- 110

Query: 123 SLLPKGKRAATMDIS-ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-- 179
            LL  G+   T+ I     A+ G I+ N  V+V+     +      +V+    RV+++  
Sbjct: 111 ILLQPGEAFVTVRIEKPEQALAGQIRANSIVNVMWTAGPN---SPSSVLAEKARVMSLMD 167

Query: 180 -------------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226
                            ++  +  +     L++   ++       +   + L   S    
Sbjct: 168 EGLKPVHTASVFQGVVTNATGQAPIPKYVMLKVKERESYEFTRPLTGGFILLSEVSKGVQ 227

Query: 227 NPSSSE 232
            P    
Sbjct: 228 TPVPPA 233


>gi|256372054|ref|YP_003109878.1| SAF domain protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008638|gb|ACU54205.1| SAF domain protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 237

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 54/184 (29%), Gaps = 24/184 (13%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
            + L  +    +  +   ++    +         V           ++    +  G  + 
Sbjct: 26  SSALRIVGSIVLAGVSLALLVASWLGGVRNAGAAVG----------VVVTRPIPAGATIE 75

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L   +                  A+ +  G    V I  G  +    ++        
Sbjct: 76  RADLGLASITVPQAV------RATLLAVDDAVGRTAAVTIAPGTLLERSMVLGPRPRTPV 129

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
                  R+ T+ +  +S   G+I+P D VDV+   + S   P    + + + V+ +  +
Sbjct: 130 -------RSITIAVPSTSVASGVIEPGDRVDVLAT-TQSASSPATLTIATQLLVLDVQAS 181

Query: 183 IDSD 186
              +
Sbjct: 182 SGDE 185


>gi|289642191|ref|ZP_06474342.1| SAF domain protein [Frankia symbiont of Datisca glomerata]
 gi|289508037|gb|EFD28985.1| SAF domain protein [Frankia symbiont of Datisca glomerata]
          Length = 275

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 8/131 (6%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
                    P     V+++  DLA G  +    +  V+ P + V  G +         Q+
Sbjct: 40  AVAAARPARPPSPTPVVVAAADLAGGATMAATDVRMVSLPTDVVPVGAVRSP------QD 93

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
             G  +   + +G+PI   +++             G  AA + I+ + +V   ++  DHV
Sbjct: 94  AVGRTLTAAVRQGEPITDARVLGP-GLITRRQAAAGLVAAPVRITDAGSVL-FLRVGDHV 151

Query: 153 DVVMVRSLSER 163
           +V+   +    
Sbjct: 152 NVLAAATDVGG 162


>gi|333025173|ref|ZP_08453237.1| putative membrane protein [Streptomyces sp. Tu6071]
 gi|332745025|gb|EGJ75466.1| putative membrane protein [Streptomyces sp. Tu6071]
          Length = 243

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 19/192 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                ++V+ +  D+  G  ++ +    +   ++        D       +   G     
Sbjct: 56  QAGDRVSVVRTTKDIPAGGSLSRDNTTDILVAKDESIHYLNWDQIDLAKSKYKLG----S 111

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS- 159
            + KG  +  E L+ +      S++ +GK    + +      GG +KP D V V  V   
Sbjct: 112 ALPKGSLVVGEMLIAKDK----SVVDEGKALVGLALQEGQYPGG-LKPGDTVAVYHVGKD 166

Query: 160 -------LSERKPTVTVVLS-NIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAA 210
                   S        +LS    V   D +    E       T T+ +   +A+AL  A
Sbjct: 167 AGAPASGESGSSAGNRTLLSAQADVKDADGSSKGGEALSTGDRTLTVSVPASEAQALAQA 226

Query: 211 QSVAKLSLVLRS 222
            SV ++++VL  
Sbjct: 227 SSVGEVAVVLVP 238


>gi|270487708|ref|ZP_06204782.1| conserved domain protein [Yersinia pestis KIM D27]
 gi|270336212|gb|EFA46989.1| conserved domain protein [Yersinia pestis KIM D27]
          Length = 154

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 19/155 (12%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS--KGDLAVG 58
           M    L+   +  V   ++GI+    ++P     E +      K  N++++  + DL  G
Sbjct: 1   MNRKFLILFSLLIVAIGISGIL----LNPDKEIPELLTQTEKRKERNIVLAQTRHDLTAG 56

Query: 59  MVVTPNILEWVAFPEENVFD------------GFIDDVHQPNAMQELDGVLVRVPILKGD 106
            +++           +   D                         +LDG L++  IL G 
Sbjct: 57  TLISKEDYSLQNITVDESSDLVKNDLSHGHRIDGDSIADDRTHDHKLDGHLLKNNILAGS 116

Query: 107 PIRLEKLVDRGNGGLSSL-LPKGKRAATMDISISS 140
            I  E L+   +   S L L  G+      I+  +
Sbjct: 117 YIIDEMLISPDSREFSRLNLKHGEIIYKFYITEKT 151


>gi|300790122|ref|YP_003770413.1| hypothetical protein AMED_8314 [Amycolatopsis mediterranei U32]
 gi|299799636|gb|ADJ50011.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 205

 Score = 51.7 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 32/220 (14%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           + TRL+   ++    ++  +  +   S     T              +++  DL  G  +
Sbjct: 18  RRTRLIRRWLAVGLLVLGAVFLIHPGSARGAPT--------------VLAAHDLPSGATL 63

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               +      +E    G +        +  +DG L+   +  G+P+   +L       +
Sbjct: 64  GAADVRLADLSDEARPTGVLST------LDAVDGRLLAGAVRAGEPLTDVRL-----ATV 112

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
            +    G     + ++   AV  +++P   VDVV            +V+ +   V+ + H
Sbjct: 113 PAPADPGTATVPVRLADV-AVAALLRPGQRVDVVAAPEP---AAPASVLAAGATVVTVGH 168

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
              +    L G    L L    A  + A      +++ LR
Sbjct: 169 QEPA---TLKGPLVLLRLPEAAATRVAAISLERPVTVTLR 205


>gi|222530414|ref|YP_002574296.1| hypothetical protein Athe_2455 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222457261|gb|ACM61523.1| conserved hypothetical protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 194

 Score = 51.7 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 29/219 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK      I ++ + A++  +++   +S                 I + ++K  +  G +
Sbjct: 1   MKNR---VIKLAVIPAVLVALLSYIFISRQ------------TNMIQIPVAKNLIHQGEI 45

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  N + ++  P   +  G I +       ++L G    V  + GD    + +       
Sbjct: 46  INDNDITFLKLPSYALPRGVIKE------KEKLVGKRAGVTRVAGDFFYDDVI-----KT 94

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +   + + +    ++I     +   I     + ++   S S        V     V  + 
Sbjct: 95  VYVQVYEDETLICVNIPEP--LTQFITEGTKL-IIATTSTSNSGVPPFAVEDAEVVSLLS 151

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
              ++         A +++   QA  L  A      ++V
Sbjct: 152 KTTNNMVSGSNTRYAIVKVKKDQAVQLAYALKNGDYTVV 190


>gi|296128692|ref|YP_003635942.1| SAF domain protein [Cellulomonas flavigena DSM 20109]
 gi|296020507|gb|ADG73743.1| SAF domain protein [Cellulomonas flavigena DSM 20109]
          Length = 235

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 21/176 (11%)

Query: 52  KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
             D+  G  +T + L  V  P      G         A  +  G +  V +    P+   
Sbjct: 74  AHDVPAGTALTAHDLVLVDVPVGTAPGGAFR------APDDALGQVPAVDLPARLPLTPS 127

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171
            L D    G     P G     + +    AV  ++ P  H+D+V  R           V 
Sbjct: 128 VLADAQLAG-----PDGTVVVAVRLDDP-AVAALLAPGLHLDLVAAR---LEGGPGETVA 178

Query: 172 SNIRVIAIDHNIDSDER------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221
               V +                V V +   + +TP +A  +  A   ++L  V+ 
Sbjct: 179 RRALVRSAPGVAPEGGGLLGAPAVDVAAPVLVAVTPQEAVRIAEASVSSRLVAVVV 234


>gi|51891538|ref|YP_074229.1| hypothetical protein STH400 [Symbiobacterium thermophilum IAM
           14863]
 gi|51855227|dbj|BAD39385.1| hypothetical protein [Symbiobacterium thermophilum IAM 14863]
          Length = 203

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 55/183 (30%), Gaps = 18/183 (9%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               +    V +++ ++  G  +   +L+ V             +     A    DG   
Sbjct: 33  VAAGSGTEIVWVARREILPGTQLKEEMLQRVEVDGPTRQLLA-REALPRTASDTPDGWYA 91

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
              I  G+P+     V           P+  R  ++           ++P + VD+ +V 
Sbjct: 92  TRAIRPGEPLIPAGNVSPVPPSADVTPPEALRVVSLRTEWVG--PPELQPTEEVDLYVV- 148

Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
                      +L+  RV+                  ++ +   Q   ++AA     + +
Sbjct: 149 ---TGDGEALRILTGARVV-----------QAESDRVSVLVPEEQVPLVIAAADGVTVKV 194

Query: 219 VLR 221
           V R
Sbjct: 195 VRR 197


>gi|167038605|ref|YP_001666183.1| SAF domain-containing protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116994|ref|YP_004187153.1| SAF domain-containing protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166857439|gb|ABY95847.1| SAF domain [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319930085|gb|ADV80770.1| SAF domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 181

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 63/181 (34%), Gaps = 30/181 (16%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            I ++ + A V+    +  +                K   V+I + D+  G V++ + ++
Sbjct: 4   IIKIALITAAVSAAFMLVFMQNIQ------------KTEKVVIVEKDIPAGTVISEDAVK 51

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127
            V  P   V   +        ++  + G +V+   ++GD I +E L  +     S  L  
Sbjct: 52  VVDVPASAVKPNYAR------SLSNVVGKVVKEGRVRGDFIPVEILTSKD----SQPLGP 101

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE 187
                T+ ++        ++  D V  ++      +      VL   +VI++        
Sbjct: 102 DHAVMTVSVTSVE--AKTLQSGDTVSFIVFDQTGSK------VLDGFKVISVVKEDSDKA 153

Query: 188 R 188
            
Sbjct: 154 S 154


>gi|29826723|ref|NP_821357.1| hypothetical protein SAV_183 [Streptomyces avermitilis MA-4680]
 gi|29603819|dbj|BAC67892.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 234

 Score = 51.3 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 25/223 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   ++ + ++ + A  AG+  + L                     V+    D+ VG V+
Sbjct: 35  RRPGVIALSLALIAAGGAGVAVLLL--------------QVGHRTEVVTVARDVQVGQVL 80

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           +   L   +   +           +   +  + G    V +  G  +   ++ +      
Sbjct: 81  SEEDLGKASIALDPA-----VKAVRAGDLDSVVGKRAAVELRPGSLLAPSQVTED----- 130

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
            SL+  G++   + +         + P   V++V V +        +  LS   +     
Sbjct: 131 -SLVKAGEQLVPIGLKSEQVPATALVPGQKVELVHVPAQGVEDTGKSSGLSPRTIAGRVV 189

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
                          +  +        A  S   L LVL +  
Sbjct: 190 KASGAAPGSGVVVVDVATSADDGPIAAAWVSAGTLRLVLAAPD 232


>gi|295837162|ref|ZP_06824095.1| membrane protein [Streptomyces sp. SPB74]
 gi|295826378|gb|EFG64805.1| membrane protein [Streptomyces sp. SPB74]
          Length = 241

 Score = 51.3 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 69/192 (35%), Gaps = 19/192 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
           N    ++V+ +  D+  G  ++      V   E+      I  +             +R 
Sbjct: 54  NAGDRVSVVRTTKDVPAGGTLSRENTTDVLVAEDE----SIHYLRWDQIDLAKSKYKLRS 109

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS- 159
            + +G  +  E L+ +      S++ +GK    + +      GG +KP D V V  V   
Sbjct: 110 ALPQGSLVVGEMLIGKDK----SVVDQGKALVGLALKEGQYPGG-LKPGDTVAVYHVGKD 164

Query: 160 -------LSERKPTVTVVLSNIRVI--AIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210
                   S        +LS    +  A   +   +       T T+ +   +A+AL  A
Sbjct: 165 AGAPAAGESGSSGGDRTLLSAAADVKDADGSSKGGEALSTGDRTLTVSVPAGEAQALAQA 224

Query: 211 QSVAKLSLVLRS 222
            SV ++++VL  
Sbjct: 225 SSVGEVAVVLVP 236


>gi|307265038|ref|ZP_07546599.1| SAF domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920023|gb|EFN50236.1| SAF domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 181

 Score = 51.3 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 26/173 (15%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           ++R++ I +       A ++                 +N  K   V++ + D+  G V++
Sbjct: 1   MSRIIKIALITAAVSAAFMLVF--------------MQNIQKTEKVVVVEKDIPAGTVIS 46

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            + ++ +  P   V   +           ++ G +V+   +KGD I +E L  +    LS
Sbjct: 47  EDAVKVIDVPASVVNPSYARSPA------DVVGKVVKDGRVKGDFIPVEILTSKDAQPLS 100

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
                 +   T+ ++        ++    V  ++      +      V+S IR
Sbjct: 101 ----PDRAVMTVPVTSVE--AKTLQSGSTVSFIVFDQTGSKVIEGFKVISVIR 147


>gi|329930829|ref|ZP_08284228.1| SAF domain protein [Paenibacillus sp. HGF5]
 gi|328934531|gb|EGG31036.1| SAF domain protein [Paenibacillus sp. HGF5]
          Length = 367

 Score = 50.9 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 55/178 (30%), Gaps = 31/178 (17%)

Query: 2   KLTRLMGIVVSGVF---ALVAGIIAMRLVSPHH-------------VQTEEVITENPAKF 45
           +  +L+   ++G     A+ AG +   +                   + EE   +     
Sbjct: 7   RSRKLIFAGLAGAAVTGAVCAGAMLYYVHGSKEQRHVERTQYEQRIAELEETQLQQLNSM 66

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
               +   D+  G  +    ++ V  P +          +  +  +E+ G   ++ +L+G
Sbjct: 67  QVAWVPVRDIPPGHFIEAKDIKEVRLPYDG------TSGNLFSGREEIAGKGAKIELLRG 120

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
            PI    L +           +  ++  +           ++  D +DV +     + 
Sbjct: 121 MPITGAMLFEEEPTRPDLRHRE-MKSVYLPSD--------LRKGDVIDVRVQFPTGQD 169


>gi|256374774|ref|YP_003098434.1| SAF domain protein [Actinosynnema mirum DSM 43827]
 gi|255919077|gb|ACU34588.1| SAF domain protein [Actinosynnema mirum DSM 43827]
          Length = 191

 Score = 50.9 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 18/124 (14%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                  VL++  DL  G+ +    +  V  P     +G +       A +   G  +  
Sbjct: 23  PDPATTTVLVAARDLPPGVALAREDVRAVELPPGVAPEGVV-------AAEVAVGRALVS 75

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
               G+P+   +L                 AA++ +       G+++    VDVV V  L
Sbjct: 76  TARAGEPLTDARLTGVDPE-----------AASVAVRFDPVTAGLLRTGSRVDVVGVGRL 124

Query: 161 SERK 164
               
Sbjct: 125 GSTG 128


>gi|146296447|ref|YP_001180218.1| hypothetical protein Csac_1426 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410023|gb|ABP67027.1| hypothetical protein Csac_1426 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 194

 Score = 50.9 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 73/219 (33%), Gaps = 29/219 (13%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK      I ++ + A++  +++   +S                 I + ++K  +  G +
Sbjct: 1   MKNR---VIKLAVIPAVLVALLSYIFISRQ------------TNMIQIPVAKNFIHQGEI 45

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  + + ++  P   +  G I +       ++L G    V  + GD    + +       
Sbjct: 46  IDDSDITFLKLPSYALPQGVIKE------KEKLVGKRAGVTRVAGDFFYDDVI-----KT 94

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180
           +   + + +    ++I     +   I     + ++   S S        V     V  + 
Sbjct: 95  VYVQVYEDETLICVNIPEP--LTQFITEGTKL-IIATTSTSNSGVPPFAVEDAEVVSLLS 151

Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
              ++         A +++   QA  L  A    + +++
Sbjct: 152 KTTNNIVSGSNTRYAIVKVKKDQAVQLAYALKGGEYTVI 190


>gi|258510599|ref|YP_003184033.1| SAF domain-containing protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477325|gb|ACV57644.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 261

 Score = 50.9 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 53/158 (33%), Gaps = 23/158 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M +     + +  +   VA  +   ++   H              + + ++   +     
Sbjct: 1   MAMVSKATMGLGLLGIGVAVWLDWMVLERAHA------------TVEIPVASQTILPYTT 48

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +TP+ + W   P   V    + +           G L  + +  GDPI   +L  +G+  
Sbjct: 49  ITPSDITWKQVPRAAVPSDLVTNP---------VGRLTVLGVAAGDPIESSELAAQGSLQ 99

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
            +    +      +++S S  +   + P   V +V+  
Sbjct: 100 -AYAASQNDVLVPVNVSPSP-ITEAVTPGATVTLVVNG 135


>gi|21234163|ref|NP_639740.1| hypothetical protein SCP1.167 [Streptomyces coelicolor A3(2)]
 gi|13620649|emb|CAC36688.1| putative membrane protein [Streptomyces coelicolor A3(2)]
          Length = 227

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 62/220 (28%), Gaps = 29/220 (13%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R   + +  V A++  + A   V+    +              VL    D+  G  +
Sbjct: 29  RERRWSVVALCIVLAVICALTAAWAVNSASDR------------TRVLALARDVPAGQAL 76

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T   +       +                  + G    V + KG  +    L        
Sbjct: 77  TSADVTVAEVSADAALS-----PLPATDKSSVVGKRTAVDLRKGGLLLASHLAPGSG--- 128

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
              L   +    + I    A  G + P D V  V   +  +  P            +ID 
Sbjct: 129 ---LGDDQEQVGVQIKRGMAPAGTLAPGDKVKAVTTPAEGDDLPKTGGTAPE----SIDA 181

Query: 182 NIDSDERVLVGSTAT--LELTPMQAKALVAAQSVAKLSLV 219
            + S  R     T    L +   +   L    ++ +++LV
Sbjct: 182 TVISVSRPDASGTVVVNLAVGTDEGPILATRAALNRVALV 221


>gi|269217390|ref|ZP_06161244.1| Flp pilus assembly protein CpaB family protein [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269213171|gb|EEZ79511.1| Flp pilus assembly protein CpaB family protein [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 195

 Score = 50.5 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 66/181 (36%), Gaps = 24/181 (13%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M + V+ + +L A +  +R ++P                ++V+++K DL  G  +  + L
Sbjct: 1   MLLAVAVLTSLAAILSTIRGLAP--------------ATVSVVVAKKDLTPGTALGSSNL 46

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
                  E   +G         ++++L+  ++   + KG P+  +      +    +  P
Sbjct: 47  TIAEVSAELAPEGLTR------SLEDLNERVLITSVPKGAPVTRKM---TLSDDFLASAP 97

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186
           +G   A + ++       ++ P   V +        +      ++    ++ +    +S 
Sbjct: 98  EGTEIAPV-VADVGGADKLLTPGRTVALYAPPGEHSKAREAVKIVDKATIVGVGPKNEST 156

Query: 187 E 187
            
Sbjct: 157 S 157


>gi|119961944|ref|YP_948401.1| hypothetical protein AAur_2686 [Arthrobacter aurescens TC1]
 gi|119948803|gb|ABM07714.1| conserved hypothetical protein [Arthrobacter aurescens TC1]
          Length = 214

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 68/207 (32%), Gaps = 29/207 (14%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           + I V  V A ++G+IA+   +               +   V  ++ D+AVG VVT   L
Sbjct: 22  LLIGVLLVLASISGVIALVGTAD--------------RTTQVYTAREDIAVGQVVTEADL 67

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
             V    ++V   ++   +        +G +    + K   +  E L             
Sbjct: 68  SIVKVRLDDVESSYVTVENGV-----AEGKVALQRVAKNQLVPQESLGVPDAL------- 115

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186
             ++   +       V  +  P   VDV +    S        +L     IA+     + 
Sbjct: 116 -NRKPVAIATEEELPVQAV--PGARVDVWIAMPGSNSAFDEPQLLLPSAEIALMTPGSTA 172

Query: 187 ERVLVGSTATLELTPMQAKALVAAQSV 213
                 +   + +T  Q   L+ AQ+ 
Sbjct: 173 FGSAKTTVVMVLVTDEQMPKLLWAQAN 199


>gi|38233457|ref|NP_939224.1| hypothetical protein DIP0860 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199717|emb|CAE49377.1| Putative membrane protein [Corynebacterium diphtheriae]
          Length = 227

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 46/182 (25%), Gaps = 14/182 (7%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
                +         VL     +  G  V          P+  + +  +       +   
Sbjct: 31  ALALAVFPRTESTTEVLRYATAVEAGTAVNRTHFTTAHVPQHLIPENALRPDDLLASAPN 90

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSS--LLPKGK----RAATMDISISSAVGGMI 146
               +       G        +D  +   S    LP G+        + +    +V  ++
Sbjct: 91  E--RITISAHTAGSIATAVDFLDSSHTLSSVGNQLPFGEDQPINIVPIRL-AEQSVSRVV 147

Query: 147 KPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKA 206
           +P D VDV+      +             VI      + +          + L   QA+ 
Sbjct: 148 QPGDVVDVIAANDAHDPHVVAAGG-----VIVFAPVPEKNTSSYGSDAVLIALPADQARI 202

Query: 207 LV 208
           + 
Sbjct: 203 VA 204


>gi|332982946|ref|YP_004464387.1| hypothetical protein Mahau_2401 [Mahella australiensis 50-1 BON]
 gi|332700624|gb|AEE97565.1| hypothetical protein Mahau_2401 [Mahella australiensis 50-1 BON]
          Length = 332

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 66/214 (30%), Gaps = 25/214 (11%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              V++   ++   M +T +++   A P   V    + D +         G +       
Sbjct: 29  TKQVVVVTKEINDTMEITSDMITVKALPVSAVPGDVLTDPNAVIGKMTTVGRI------P 82

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           GD I    L    +      +   +   TM+I  S  V   I       +++     +++
Sbjct: 83  GDLIPKSILAKPED----IAVKDNEVLLTMNIPSSDDVLTHINK----KILLALYGDQKQ 134

Query: 165 PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL-------- 216
           P   +++  + +  I + +             ++     AK ++   +            
Sbjct: 135 PP--IIVDGVEIYQIKNTVSGSSGQSQPYAI-IKTDVETAKIIMPYIASGSYKILSNKGQ 191

Query: 217 SLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250
           SL   S AD  P+    +          +I   +
Sbjct: 192 SLPSESAADQEPAGQNTTGALSAVNSIAKISEYR 225


>gi|257793127|ref|YP_003186525.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479819|gb|ACV60136.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 261

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 53/158 (33%), Gaps = 23/158 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M +     + +  +   VA  +   ++   H              + + ++   +     
Sbjct: 1   MAMVSKATMGLGLLGVGVAVWLDWMVLERAHA------------TVEIPVASQTILPYTT 48

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +TP+ + W   P   V    + +           G L  + +  GDPI   +L  +G+  
Sbjct: 49  ITPSDITWKPVPRAAVPSDLVTNP---------VGRLTVLGVAAGDPIESSELAAQGSLQ 99

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
            +    +      +++S S  +   + P   V +V+  
Sbjct: 100 -AYAASQNDVLVPVNVSPSP-ITEAVTPGATVTLVVNG 135


>gi|156741665|ref|YP_001431794.1| SAF domain-containing protein [Roseiflexus castenholzii DSM 13941]
 gi|156232993|gb|ABU57776.1| SAF domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 336

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 82/276 (29%), Gaps = 71/276 (25%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVG--MVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           P    T       P     V+ ++ D+     +  T  +L     PE    +        
Sbjct: 30  PAPETTALPQEPTPVPLRKVVAARVDIPANTVLTDTETLLTLRDIPE---PEYNAAPDQY 86

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP-------KGKRAATMDISIS 139
             ++ EL   +    +   + IR   L    + GLS  +P          +   +++   
Sbjct: 87  FTSVGELTTKVTLRALNATEIIRARDLT---DAGLSFQVPPPDTIDAPRNKVFPLEVGNL 143

Query: 140 SAVGGMIKPNDHVDVVMVR-------------------------SLSERKPTVTVVLSNI 174
           + V   I+P D VD+VM                             +        ++ N+
Sbjct: 144 TGVADQIRPGDSVDLVMTYEIRRLIIRPSLTTDPETGQLVVTPIEETLVDRVTKTMVQNV 203

Query: 175 RVI-----AIDHNID-------SDERVLVGSTA---------------TLELTPMQAKAL 207
           +V+     AI  +           E     S+A                L +T  +A+ +
Sbjct: 204 QVLRVLKPAIPQDTGTPTPGGAQGEPAPPPSSAQQQGDTYVPGAQWILLLAMTDQEAEIV 263

Query: 208 --VAAQS--VAKLSLVLRSIADLNPSSSEDSDVWDV 239
                Q     +++LVLR   D +   +    +  +
Sbjct: 264 KFTLDQQDPKPQITLVLRGRDDGDIEETTGITLRLL 299


>gi|325982376|ref|YP_004294778.1| flagella basal body P-ring formation protein FlgA [Nitrosomonas sp.
           AL212]
 gi|325531895|gb|ADZ26616.1| flagella basal body P-ring formation protein FlgA [Nitrosomonas sp.
           AL212]
          Length = 249

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 26/137 (18%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +        NVL +   +A G ++T   +         + +G + D         + G +
Sbjct: 117 VQAEINVMSNVLHTARPIATGQIITNEDIAPQNTNLTQLPEGILTDASL------IVGKV 170

Query: 98  VRVPILKGDPIRLEKLVDRG--------------------NGGLSSLLPKGKRAATMDIS 137
               +  G P+R + L                        + G +       +   +   
Sbjct: 171 AATNLPAGQPLRPQMLRAPYVILRGQTVSLVVQGRGFNIQSEGQALADAADGQVIQVRNK 230

Query: 138 ISSAVGGMIKPNDHVDV 154
               V G+ +PN  V++
Sbjct: 231 SGRIVSGLARPNSIVEI 247


>gi|229587502|ref|YP_002860540.1| SAF domain family [Clostridium botulinum Ba4 str. 657]
 gi|229260297|gb|ACQ51334.1| SAF domain family [Clostridium botulinum Ba4 str. 657]
          Length = 208

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 70/196 (35%), Gaps = 30/196 (15%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + +++   V G+  L      +               +N +    V++ K D+  G ++T
Sbjct: 1   MKKILKFGVIGILFLFVLFYIIL--------------KNVSGTTKVIVLKNDINKGKIIT 46

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              +E      +NV    + +       +++ G  ++V  L+ D I  + +     G  +
Sbjct: 47  EQDVETKEISNKNVLPDIVLN------QKDIVGKSLKVDRLQNDFIPKKII-----GDTA 95

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
             L   +   T+ +        +I   D + + ++ + S   P    ++ ++ + +I+  
Sbjct: 96  IKLKSNEVLLTIFMPRED--AKLISTGDEIALALIENNSNEHPQ---IIKDLIITSIEEL 150

Query: 183 IDSDERVLVGSTATLE 198
              +      +   + 
Sbjct: 151 PKKENDDNANNKVLVA 166


>gi|169834850|ref|YP_001715940.1| SAF domain-containing protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408957|gb|ACA57367.1| SAF domain family [Clostridium botulinum A3 str. Loch Maree]
          Length = 208

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 67/196 (34%), Gaps = 30/196 (15%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + +++   + G+  L      +               +N +    V + K D+  G ++T
Sbjct: 1   MKKILKFGIVGILFLFTVFYIIL--------------KNVSGTTKVAVLKNDINKGKIIT 46

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              +E      +NV    +         +++ G  ++V  L+ D I  + +     G  S
Sbjct: 47  EQDVETKEISNKNVLPDIVLSP------KDIVGKSLKVDRLQNDFIPKKII-----GDTS 95

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
             L   +   T+ +        +I   D + + ++ + +   P    ++  + + +I+  
Sbjct: 96  IKLKSNEMLLTIFMPRED--AKLISTGDEIALALIENNANENPQ---IIKGLIITSIEEL 150

Query: 183 IDSDERVLVGSTATLE 198
              +      +   + 
Sbjct: 151 PKKENDDSTNNKVLVA 166


>gi|307327609|ref|ZP_07606794.1| SAF domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306886721|gb|EFN17722.1| SAF domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 228

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 61/218 (27%), Gaps = 25/218 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R     +  V A++ G+ A   V+    +              VL    D+  G  +
Sbjct: 30  RERRWSVAALCVVLAVLCGLGAAAAVTSASDRK------------QVLAVARDVPAGQAL 77

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T   L         V                + G    V + KG  +   +L        
Sbjct: 78  TAADLSVAE-----VSSDAALTPVPAADKAGVIGKRPAVDLRKGGLLTTSQLAGGTG--- 129

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
              L   ++   + I    A  G + P D V  V   +  + +        +    A+  
Sbjct: 130 ---LGDDQQQVGVQIKRGQAPAGTLAPGDKVLAVSTPAQGDEQAAKDDGPPSTIEAAVVS 186

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
               D    V     L +       L    ++ +++LV
Sbjct: 187 VSRPDASGTVV--VNLAVAATDGPTLATRAAMGRIALV 222


>gi|269955647|ref|YP_003325436.1| SAF domain-containing protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304328|gb|ACZ29878.1| SAF domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 218

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 57/177 (32%), Gaps = 17/177 (9%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            +L+   D+  G V+    L       + +           ++  ++ G    V +  G 
Sbjct: 57  EILVLVDDVPRGSVIEAGDLGVATLNADPL-----LKPVPASSRDDVVGKRAAVDLSAGS 111

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
                 L+   +         G+    ++++ + A G  ++  D V VV           
Sbjct: 112 ------LLTPTSTTDEMRPAAGRSLVPIELTPAQATGLGLQVGDAVKVVDTPEARAEN-V 164

Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
                ++  V  I             +  +LE+   +A  L A  +   ++LVL S 
Sbjct: 165 GNPASTSALVALIGV-----TERTGATVVSLEVPSTEAGVLAARIATGNVALVLESR 216


>gi|315501061|ref|YP_004079948.1| saf domain protein [Micromonospora sp. L5]
 gi|315407680|gb|ADU05797.1| SAF domain protein [Micromonospora sp. L5]
          Length = 222

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 70/219 (31%), Gaps = 25/219 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R   + ++ +   + G+ A   V+                    L     + VG  +
Sbjct: 25  RRVRPGLLGLAVLLIALGGLGAAFAVTSVRS------------TGTYLAVARPVDVGHQL 72

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T + L  V      V  G        + M E+ G+   V +  G  +   +L +      
Sbjct: 73  TADDLVPVR-----VSGGRELQPVPADRMDEVLGLRAAVRLTPGTLLTPAQLTE------ 121

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           + LL  G++   + +         + P D V +V   S +    +        R      
Sbjct: 122 APLLGPGQQQIALGLEPEQVPARKLHPGDKVLLVSTPSNATGGGSEASRGGGTR--FEGT 179

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            ID+           L L      A+VA  +  +++LVL
Sbjct: 180 VIDTAAPQNGDVVVYLALAVRDVPAVVALAADDRIALVL 218


>gi|152967638|ref|YP_001363422.1| SAF domain protein [Kineococcus radiotolerans SRS30216]
 gi|151362155|gb|ABS05158.1| SAF domain protein [Kineococcus radiotolerans SRS30216]
          Length = 224

 Score = 49.0 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 18/160 (11%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++  DL VG V+ P  +  V  P E + DG +D          L G ++  P+ +G+ +
Sbjct: 56  LVAVRDLPVGAVLGPGDVREVQRPGETLPDGLLDR-------TRLTGAVLAGPVRRGEVL 108

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--ERKPT 166
              +     +  + +  P G  A T+D+   + + G + P  HVDV+             
Sbjct: 109 TDAR---AADASVLTGQPAGTLAVTVDVGDPAVLAG-LGPGVHVDVLARTEDPLTGAATG 164

Query: 167 VTVVLSNIRVIAI-----DHNIDSDERVLVGSTATLELTP 201
              + +++ V+ +        +         ++  + + P
Sbjct: 165 AERIATDVVVLRVPPARTATGLLGGTPGSSATSVLVAVEP 204


>gi|167006303|ref|YP_001661526.1| membrane protein [Streptomyces sp. HK1]
 gi|166162385|gb|ABY83506.1| membrane protein [Streptomyces sp. HK1]
          Length = 228

 Score = 49.0 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 52/199 (26%), Gaps = 12/199 (6%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           +    +++            + +    V+    D+  G  +T   L       +      
Sbjct: 37  VALCVVLAVLAGLGAAAAVTSASDRTKVIAVAQDVPAGQALTDADLTIAEVSADAA---- 92

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
                       + G    V + KG  +    L           L   K+   + +    
Sbjct: 93  -LTPVPAAEKGSVVGKRPAVDLRKGSLLISSHLASGTG------LGDDKQQVGVQVKKGQ 145

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELT 200
           A  G + P D V  V   +  E+  +         + A+     S           L + 
Sbjct: 146 APSGTLAPGDKVLAVTTPAQGEQTSSKEAEAPPSTIDAV-VVTVSRPDASGTVVVNLAVN 204

Query: 201 PMQAKALVAAQSVAKLSLV 219
                 L    +  ++++V
Sbjct: 205 SGDGPLLATRAAQGRIAVV 223


>gi|119025306|ref|YP_909151.1| hypothetical protein BAD_0288 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118764890|dbj|BAF39069.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 266

 Score = 49.0 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 24/162 (14%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
           + AL AG+     +                    ++++  ++A G  +T   +E    P 
Sbjct: 58  LAALCAGLTVFATLQ---------CVRAAIATQPIVVAVRNVAKGTAITREDVELREAPS 108

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAAT 133
           +               + +  G++ +V I   D +             S ++P+G  +  
Sbjct: 109 DGSLSNAFHT------LDDAVGLIAQVGIGAHDVLMSGM------ARASPVVPQGHTSIE 156

Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
           + ++   +V G + P D V +           + T  ++++ 
Sbjct: 157 VRLA---SVAGGLIPGDKVTLSSATMTDAEMQSGTPNVADMP 195


>gi|119715775|ref|YP_922740.1| SAF domain-containing protein [Nocardioides sp. JS614]
 gi|119536436|gb|ABL81053.1| SAF domain [Nocardioides sp. JS614]
          Length = 230

 Score = 48.6 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 76/216 (35%), Gaps = 29/216 (13%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
             + +F ++A ++A         +              VL     +  G V+  + L  V
Sbjct: 40  AGAVLFVVMAVLLAGWFWQQKSDREA------------VLAIDHSVPAGAVIAKDDLRIV 87

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
                      +D        Q + G    V +++G  +  + +  +       L   G+
Sbjct: 88  EV-------AGVDSTISSEDAQTVIGSTAAVGLVEGQILTPDMVTSKP------LPGPGE 134

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189
           R   + +  + A  G++ P D   VV++       P+    L +  V+A    + S + V
Sbjct: 135 RVVGLQLDATRAPTGLL-PGDV--VVVIAVPPAGDPSSPAELDDPTVLAPQATVASADVV 191

Query: 190 LVGST-ATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
               T  TL +    A+ + A  +  +++LV   I 
Sbjct: 192 EGAGTRLTLVVPEAVAERVTAYVAAGRVALVQAPIG 227


>gi|308177877|ref|YP_003917283.1| hypothetical protein AARI_20920 [Arthrobacter arilaitensis Re117]
 gi|307745340|emb|CBT76312.1| conserved hypothetical membrane protein [Arthrobacter arilaitensis
           Re117]
          Length = 221

 Score = 48.6 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 62/198 (31%), Gaps = 24/198 (12%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
            AL A ++   +    ++  E        +   V ++  ++ +G  +T   ++       
Sbjct: 28  LALGAVLVIASVAGTVYLVGELH------QTSTVYVASSNITLGEQLTAENMKTQEVQLG 81

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATM 134
           +  + ++                    I  G+ I +  + +   G              +
Sbjct: 82  DTLENYLHVDMPVGQE-----ARANTFISAGELIPVTSITNSALGSRR----------PI 126

Query: 135 DISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVIAIDHNIDSDERVLVG 192
           ++ + + +   I P   VDV + +  S          + S + V A             G
Sbjct: 127 NVELPADLSSSITPGSFVDVWIAKRESSGNTYEVPEKLSSMVEVAAR-VESGGGLVGTHG 185

Query: 193 STATLELTPMQAKALVAA 210
           +   L + P Q + L+ A
Sbjct: 186 TNLELLVEPNQLEPLLQA 203


>gi|15679046|ref|NP_276163.1| hypothetical protein MTH1028 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622131|gb|AAB85524.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 441

 Score = 48.6 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 81/252 (32%), Gaps = 40/252 (15%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLI---SKGDLAVGM 59
            T +  +V   +  ++AG     LV   + +T +         ++ L       D     
Sbjct: 117 RTIIGALVFGLIILVLAGAGYYFLVYQPYQETLQNAKATKIAEVDALFKGPLATDPQKQA 176

Query: 60  VVTPNILEWVAFPEENVFDGFI---------DDVHQPNAMQELDGVLV----------RV 100
           ++          PEE +    +             Q N  ++  G ++          RV
Sbjct: 177 ILAQIDAAVT--PEEALAVDVVGPATQSWRTYQNQQINIKKDRVGRVMVNYTDNNQEKRV 234

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            +   D  +     D      + +      A  + I+   A GG+I   D VDV + ++ 
Sbjct: 235 IMKVDDAKKFVSQADATVLANTQIQTPDTVAVPIMITRLQAAGGLISVGDMVDVYLNQNA 294

Query: 161 SERKPTVTVV---LSNIRVIAIDHNIDS---DERVLVGSTATLE----------LTPMQA 204
           +    +       +S   V+AI  + DS   D R+L     TL            +    
Sbjct: 295 TGNNTSAATSTPRISGATVLAILRSKDSGAVDARILNTQRLTLNSITSQSENERASSTDV 354

Query: 205 KALVAAQSVAKL 216
           + L+ A +   L
Sbjct: 355 EQLLRAAASGGL 366


>gi|302559129|ref|ZP_07311471.1| membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476747|gb|EFL39840.1| membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 242

 Score = 48.6 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 5/185 (2%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                I V+     +  G  VT +    V   E+                 +    +   
Sbjct: 58  QAGDRIEVVKITEPIPAGQPVTDSNTTSVMVAEDPGIHYVEWSQLDALKKLKAVSAIPAG 117

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA---VGGMIKPNDHVDVVMV 157
            +  G+    E  V  G   +   L +G+  A ++     A   VGG  +     D    
Sbjct: 118 VVAVGEMFGDEAKVPSGKALVGMSLKEGQYPAGLESGDVVAAYRVGGTSRSGS--DDDAG 175

Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
              S    + ++++   RV  +      D         TL +   +A  L  A S  +++
Sbjct: 176 TGGSAGGGSDSLLVEQARVDFVQAGKSDDIVSSANKPVTLLVDSAEAAVLTQAASNGEVA 235

Query: 218 LVLRS 222
           LVL  
Sbjct: 236 LVLVP 240


>gi|310642358|ref|YP_003947116.1| saf domain protein [Paenibacillus polymyxa SC2]
 gi|309247308|gb|ADO56875.1| SAF domain protein [Paenibacillus polymyxa SC2]
          Length = 325

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 51/176 (28%), Gaps = 29/176 (16%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL------------ 49
           + +    +    + A + G+I +  +  +  Q  E+  +   +                 
Sbjct: 5   RKSSKQKLSAGCIGAGIVGMIFVSYLILNTHQMSEIRKQAEVEAEQKWKLYEQEQRTAKT 64

Query: 50  --ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
                 D++ G  +T N L+ +  P        + +        E+ G   ++ + KG  
Sbjct: 65  GWAVVRDISPGEQITSNDLKGIKVPGSQAPSNLLAN------KNEVSGTTAKIELKKGSV 118

Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
           +    +             + K            +   +K  D VD+ +     + 
Sbjct: 119 LTSAMITANEPTPKDLRNRELKVVV---------LPSSLKSGDEVDIRIQFPTGQD 165


>gi|325295400|ref|YP_004281914.1| flagella basal body P-ring formation protein FlgA
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065848|gb|ADY73855.1| flagella basal body P-ring formation protein FlgA
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 321

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           I+  D+  G ++T + ++    P +      I       ++ E+ G + +  I KG+ I+
Sbjct: 200 IAVKDIPKGKLITYSDVKIEKVPSKKARKSAI-------SLNEVIGKIAKRDIKKGEVIK 252

Query: 110 LEKLVDRG 117
           +  L    
Sbjct: 253 ITDLSPNY 260


>gi|302864767|ref|YP_003833404.1| SAF domain-containing protein [Micromonospora aurantiaca ATCC
           27029]
 gi|302567626|gb|ADL43828.1| SAF domain protein [Micromonospora aurantiaca ATCC 27029]
          Length = 222

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 70/219 (31%), Gaps = 25/219 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R   + ++ +   + G+ A   V+                    L     + VG  +
Sbjct: 25  RRVRPGLLGLAVLLIALGGLGAAFAVTSVRS------------TGTYLAVARQVDVGHQL 72

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T + L  V      V  G        + M E+ G+   V +  G  +   +L +      
Sbjct: 73  TADDLVPVR-----VSGGRELQPVPADRMDEVLGLRAAVRLTPGTLLTPAQLTE------ 121

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
           + LL  G++   + +         + P D V +V   S +    +        R      
Sbjct: 122 APLLGPGQQQIALGLEPEQVPARKLHPGDKVLLVSTPSNATGGGSEASRGGGTR--FEGT 179

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            ID+           L L      A+VA  +  +++LVL
Sbjct: 180 VIDTAAPQNGDVVVYLALAVRDVPAVVALAADDRIALVL 218


>gi|326330144|ref|ZP_08196455.1| putative membrane protein [Nocardioidaceae bacterium Broad-1]
 gi|325951957|gb|EGD43986.1| putative membrane protein [Nocardioidaceae bacterium Broad-1]
          Length = 223

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 29/223 (13%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   +  ++      L A   A    +  +                VL+++  +     +
Sbjct: 29  RRRPIHVVLALIGICLGAIGAAWAWSATTN-------------TEEVLVARTTIERWSTI 75

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + +E V      +           +   ++ G    V I  G       L+   +   
Sbjct: 76  EASDIERVR-----ISSDAALTPVPASDYNKIVGTRAAVDIAAG------GLLTPESTTS 124

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
               P GK    + ++ + A    ++  D V V++  +     P      +   V++   
Sbjct: 125 DGFPPTGKSIVGVSLTAAQAPATALRGGDPVRVIVTPTEGSEAPAGAPQFTEAEVVS--- 181

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224
                +         + +    A AL A  +   ++LVL S A
Sbjct: 182 --SHVDEASGQLVVNVLVPYADAPALAARAATGNVALVLDSAA 222


>gi|328905816|gb|EGG25592.1| SAF domain protein [Propionibacterium sp. P08]
          Length = 239

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 61/222 (27%), Gaps = 30/222 (13%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  RL+ I V        G       + H  Q              VL+    +  G +V
Sbjct: 48  RSPRLIVIGVLCACLGGLGGAVAWHRASHADQ--------------VLVMTRAVGQGEIV 93

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               +   +   +             + + ++ G    V +  G  +    + +      
Sbjct: 94  RNTDIGLTSVAVDRAVATI-----PADQLDKIVGRHALVDLSSGQLLGSHSVGE------ 142

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
              +  G+    + ++        +    HV VV      +      +   +  V+A   
Sbjct: 143 -LRVAPGRSRVGLRLAAGRLPTVSLPAGSHVTVVETSPDKDTGTVSQLSTVDAVVVAAPK 201

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
                          +E+    A  L    S+ ++++V R  
Sbjct: 202 ATGDHSSW----LVDVEVDSGDAARLADLASLDRIAVVERGR 239


>gi|302668530|ref|YP_003832978.1| SAF domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302397494|gb|ADL36396.1| SAF domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 314

 Score = 47.8 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 26/162 (16%)

Query: 1   MKLTR--LMGIVVSGVFALVAGIIAMRLVS-----PHHVQTEEVITENPAKFINVLISKG 53
           M+  +  L+  ++  V  ++AG IA+  V          Q +E+  E  A  + V ++K 
Sbjct: 1   MRKNKFKLIISILVAVLIILAGCIAIIYVGKKTLDEKKAQIDELQYEIDANKLVVYVAKN 60

Query: 54  DLAVGMVVTP-NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK 112
           D++ G  +     +           + ++ D           G +  + I   +PI  + 
Sbjct: 61  DISAGETLVDGENIMKQEIFTGLESEYYLSDSE--------VGGIAVLDIKALEPIMADM 112

Query: 113 LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           +        S  + +  R   + ++            D+VDV
Sbjct: 113 VT-------SLQIQQDTREYEIAVANLMTDQDE---YDYVDV 144


>gi|332671590|ref|YP_004454598.1| SAF domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332340628|gb|AEE47211.1| SAF domain protein [Cellulomonas fimi ATCC 484]
          Length = 205

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 72/212 (33%), Gaps = 25/212 (11%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++    +          +   P +   V+++   L  G  +T + +  V  P     DG 
Sbjct: 9   VVTALGLGIAAAGVLGTLRPAPPETRPVVVAGLPLVAGTRLTADDVRVVDVPTRLAADGA 68

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
              V       E+    + V +  G P+    L   G  G     P G    T+ ++  +
Sbjct: 69  AARVD------EVLDRSLAVDLTPGSPLVPGVLAADGATG-----PPGTVVTTVRLAD-T 116

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST------ 194
               M++P   VDV+            TVV +   V+        +    +G+       
Sbjct: 117 GAAAMLEPGRRVDVLAATP---EGGPATVVAARALVLPPPAAPGPEATAGLGTALAADAD 173

Query: 195 ----ATLELTPMQAKALVAAQSVAKLSLVLRS 222
                 L +TP ++ AL  A + + LS V+  
Sbjct: 174 HPPPVLLAVTPEESLALAGAAASSVLSAVVVP 205


>gi|289705098|ref|ZP_06501502.1| SAF domain protein [Micrococcus luteus SK58]
 gi|289558126|gb|EFD51413.1| SAF domain protein [Micrococcus luteus SK58]
          Length = 215

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 52/190 (27%), Gaps = 19/190 (10%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
                +  +  +      +  DL  G  +    L  V        + ++           
Sbjct: 36  AGVVALVASSQRTAAYWTAAEDLPPGTPIAAGDLRPVEVNLSEAGERYLSADAPAP---- 91

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
            +G +V   +  G+ +    LVD          P G+R   + +     +   +   D V
Sbjct: 92  -EGRMVSGTVRAGELLPAAALVDAD--------PDGRRPVGVALDEP--LPSGVGVGDRV 140

Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST--ATLELTPMQAKALVAA 210
           DV +       +            + I              T    L         +V A
Sbjct: 141 DVWVAMPAEGGRGHADP-ARLAEALEISEVTAEQSGFGGSGTTRVQLLAPEETLPRIVDA 199

Query: 211 Q-SVAKLSLV 219
           +   A+++LV
Sbjct: 200 KVKDARVTLV 209


>gi|258511181|ref|YP_003184615.1| hypothetical protein Aaci_1195 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477907|gb|ACV58226.1| hypothetical protein Aaci_1195 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 75/253 (29%), Gaps = 30/253 (11%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
           + R   ++     A++AG +              V  +     + V+ +K  +     V 
Sbjct: 1   MKRSAFLLTGVGLAVIAGGLF------------AVGYKLTTDTVPVITAKTYIPADTPVN 48

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121
           P+ L     P       F   +      Q L G  + V  + G+P+ +  +    +   L
Sbjct: 49  PSELGTEQVPRM-----FARQMGAITNEQSLAGRYLSVSAVPGEPLTMNMVATADDLQAL 103

Query: 122 SSLLPKGKRAATMDISIS--SAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
            +   +      + +  +  SA+   ++P   +      +++      T  L  + V+A+
Sbjct: 104 VTQYAQAHHVHGVLVDYAANSALANAVQPGQDI----ALAINPSGQNATPELYPVHVLAV 159

Query: 180 DHNIDSDERV------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233
                               T  L +   +   +  +       +V         +S  +
Sbjct: 160 SAPQQQSNSPLNINNNSASKTLYLFVPTSEYDRIAQSILSGSARVVFLPNPSTGTASVPN 219

Query: 234 SDVWDVQEEGKEI 246
           + V         +
Sbjct: 220 ATVAPSSPPKVTM 232


>gi|116671247|ref|YP_832180.1| hypothetical protein Arth_2701 [Arthrobacter sp. FB24]
 gi|116611356|gb|ABK04080.1| hypothetical protein Arth_2701 [Arthrobacter sp. FB24]
          Length = 214

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 17/174 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              +   V  +KG +AVG  +T   +  V     +V   ++             G++   
Sbjct: 42  AADQTTEVYAAKGPIAVGERLTAENVNRVKVRLGDVEGHYVTAEAGLPD-----GMVAVQ 96

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            I     +  + L               ++   + I    A+   +     VD  +    
Sbjct: 97  RIGPDQLVPRDSLGKPDAL--------NRKPVAITIDE--ALPEQVAAGSRVDAWVALPD 146

Query: 161 SERK-PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213
           +        ++L    +  +     +       +   + +T  Q   L+ AQ+ 
Sbjct: 147 ARNGFSEPKLLLPGAEIAEVTPGSTALGSSR-STVVMVLVTDEQMPRLLGAQAN 199


>gi|239917956|ref|YP_002957514.1| SAF domain-containing protein [Micrococcus luteus NCTC 2665]
 gi|239839163|gb|ACS30960.1| SAF domain-containing protein [Micrococcus luteus NCTC 2665]
          Length = 215

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 52/190 (27%), Gaps = 19/190 (10%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
                +  +  +      +  DL  G  +    L  V        + ++           
Sbjct: 36  AGVVALVASSQRTAAYWTAAEDLPPGTPIAAGDLRPVEVNLSEAGERYLSADAPAP---- 91

Query: 93  LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
            +G +V   +  G+ +    LVD          P G+R   + +     +   +   D V
Sbjct: 92  -EGRMVSGTVRAGELLPAAALVDAD--------PDGRRPVGVALDEP--LPSGVGVGDRV 140

Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST--ATLELTPMQAKALVAA 210
           DV +       +            + I              T    L         +V A
Sbjct: 141 DVWVAMPAEGGRGHADP-ARLAEALEISEVAAEQNGFGGSGTTRVQLLTPEETLPRIVDA 199

Query: 211 Q-SVAKLSLV 219
           +   A+++LV
Sbjct: 200 KVKDARVTLV 209


>gi|19552105|ref|NP_600107.1| hypothetical protein NCgl0844 [Corynebacterium glutamicum ATCC
           13032]
          Length = 184

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 24/178 (13%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           ++   ++  G  V  + L   A P   +           +++ ++ G++    +  G+  
Sbjct: 13  VVIVQEIPAGTKVEASDLGLQAIPTSLLPSTSY------DSIDDVVGLVAASTLSSGEIA 66

Query: 109 RLEKLVDRG------NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
              + V              S L +      + ++  S +  +++  D + VV   S   
Sbjct: 67  TKPRFVGTELINSIATNVTDSSLVEEINMVPLSLAEPSVIP-LLQHGDTISVV---SQDP 122

Query: 163 RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                  + +   VI               ST  + L    A+ + A      L++VL
Sbjct: 123 DTGLPENIAAGGTVILAG--------GTDPSTILIALPQSIAEKVAAQSLNTPLAVVL 172


>gi|159040456|ref|YP_001539709.1| SAF domain-containing protein [Salinispora arenicola CNS-205]
 gi|157919291|gb|ABW00719.1| SAF domain protein [Salinispora arenicola CNS-205]
          Length = 219

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 28/219 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R   + ++ +   + G+ +   V+                    L     + VG VV
Sbjct: 25  RRMRPGLLGLAVLLIALGGLGSAFAVNAVRA------------TGTYLAVARPVEVGRVV 72

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             + L  V      V  G            E+ G   RV ++ G  + +++L D+     
Sbjct: 73  NADDLVTVQ-----VAGGAGLSPVPAGQQGEVVGKRARVALVPGTLLTMDQLTDKP---- 123

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
             LL  G++  ++ +  +      + P D V +V   + ++ +   T       VI    
Sbjct: 124 --LLASGQQQLSVGLESAQVPARRLHPGDKVSLVSTPAGTDDRAAATATRFAATVIDTSG 181

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
             + DE         L L      A+ A  +  ++++VL
Sbjct: 182 TGNDDE-----LVVYLALAVRDVPAVAALVAQDRIAIVL 215


>gi|86742019|ref|YP_482419.1| hypothetical protein Francci3_3333 [Frankia sp. CcI3]
 gi|86568881|gb|ABD12690.1| hypothetical protein Francci3_3333 [Frankia sp. CcI3]
          Length = 246

 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 67/209 (32%), Gaps = 27/209 (12%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R  G  V+ +  ++    A+ L S    +            + V+     LA G VV 
Sbjct: 27  RRRWGGAAVALLLMVLGAAGALWLSSDDARR------------VEVVALARPLARGTVVA 74

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
           P  L  V         G +       A + L G  V + +  G  +  E +        S
Sbjct: 75  PADLAVVGVDARG---GSVRLATPATARRALVGRPVLLDLPAGTLLSPEMVG-------S 124

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
              P G+ +  + +         ++  D V V+   + + R     V+  ++R+  +   
Sbjct: 125 VTAPAGQVSIGVTVGPDGLPSASVRTGDAVGVLGFDTTTGR---AVVLARDVRIAEV--R 179

Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQ 211
             +       +   L L    A+ +  A 
Sbjct: 180 PPAATGRSGDTVVYLALPERLAETVETAA 208


>gi|227548266|ref|ZP_03978315.1| SAF domain protein [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079584|gb|EEI17547.1| SAF domain protein [Corynebacterium lipophiloflavum DSM 44291]
          Length = 206

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 21/175 (12%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           VL      + G V+ P+ L+   FP + V D  + D+          G ++     +G+ 
Sbjct: 48  VLAFAQPASAGDVLEPSHLQLRRFPADAVPDNALTDID------AATGQILAAAASRGEV 101

Query: 108 IRLEKLVDRGNGG--LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           +   +LV        +    P+      + ++    +  M+     V VV   ++S    
Sbjct: 102 VTSTRLVGPDLASELVGEQAPEAFSLVPVALAEPDIIP-MLHHGATVSVV---TMSPDGA 157

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
               + +  +V+                T  L L   QA A+ AA     L++VL
Sbjct: 158 QPRTIATGAKVVVAGAEEG---------TVMLLLPNTQAAAVAAASLATPLTVVL 203


>gi|119952317|ref|YP_949886.1| hypothetical protein AAur_pTC10012 [Arthrobacter aurescens TC1]
 gi|119951447|gb|ABM10357.1| hypothetical protein AAur_pTC10012 [Arthrobacter aurescens TC1]
          Length = 229

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 17/190 (8%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
           +     + VL     +  G V+    +  +         G I        +  + G    
Sbjct: 56  QAQGDRVEVLEVTKPVPAGQVIKAGDVHAIQV---AGVPGAIKASD----VDTVVGQRAA 108

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
             +++G  +  E +          L   G+R   + +     V G +   D V+V+ V  
Sbjct: 109 SGLVEGQILTPEAVTGDP------LPGDGERLVALQL-PPGRVPGGLAAGDVVNVLAVPQ 161

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGS-TATLELTPMQAKALVAAQSVAKLSL 218
                 T    L   +V+A    + S      G+   T+ +    +  + A  +  ++++
Sbjct: 162 EGAAASTNQ--LQEPQVLAEGARVQSVGSTAEGNKVVTVLVKDAVSDPVAAYSAAGQVTI 219

Query: 219 VLRSIADLNP 228
           V   +A    
Sbjct: 220 VQAPLASAEE 229


>gi|257068486|ref|YP_003154741.1| SAF domain-containing protein [Brachybacterium faecium DSM 4810]
 gi|256559304|gb|ACU85151.1| SAF domain-containing protein [Brachybacterium faecium DSM 4810]
          Length = 211

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 61/174 (35%), Gaps = 13/174 (7%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           + ++++  +L  G  ++   L       E + +G    +      +++ G   R+PI  G
Sbjct: 47  VEIVVADAELTPGTALSRADLRTARIAPELLPEGAAQQI------EDVVGQTARLPIEPG 100

Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
            P+    L D      +  LP G     + +    A+   ++P   + +++         
Sbjct: 101 TPLLPGLLEDP----AAPALPSGSALMAVPV--PRALVAHLQPGTELMLLVTDPSQPSGI 154

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
            V+  + ++ V     +              + +   +A  +  A  +  +++ 
Sbjct: 155 AVSAQVVDVVVPENGESALGGGSAATAE-VLVAVEAARAGEVAHALGLGVVTVS 207


>gi|117928960|ref|YP_873511.1| hypothetical protein Acel_1753 [Acidothermus cellulolyticus 11B]
 gi|117649423|gb|ABK53525.1| conserved hypothetical protein [Acidothermus cellulolyticus 11B]
          Length = 236

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 61/197 (30%), Gaps = 20/197 (10%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V  +  DLA G  ++ + L  V     +                +L G  V  P+  G+
Sbjct: 59  TVWAAARDLAPGTTLSHSDLTPVKVRFRD------HGARYVAGGSDLAGWTVTRPVPAGE 112

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            I    + +R    +        R  T+ I       G ++    VDV +    +E    
Sbjct: 113 LIPRSAVSERAGTPV--------RLVTVPIERLRMPRGDVR-GALVDVYLTLRTTEGTLA 163

Query: 167 V-TVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225
           V  +V++N+ V  +                   +      A++AA     L +V R   D
Sbjct: 164 VPQLVIANVTVADVISESSLGGSGGGLVL---RVPESMVAAVIAASRSGALDVV-RVPTD 219

Query: 226 LNPSSSEDSDVWDVQEE 242
              ++     +      
Sbjct: 220 QATAAPRLGVLASPAGG 236


>gi|258651609|ref|YP_003200765.1| SAF domain-containing protein [Nakamurella multipartita DSM 44233]
 gi|258554834|gb|ACV77776.1| SAF domain protein [Nakamurella multipartita DSM 44233]
          Length = 214

 Score = 46.6 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 71/226 (31%), Gaps = 29/226 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +L+R     V  V  ++  I A+ L +         +    ++   V  +   L+ G V+
Sbjct: 11  RLSRPRWFNVRVVGGILLVIAAIVLGAR--------VMAAGSQTTPVWAASRSLSAGTVI 62

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               L  V     +    ++       A     G  +  P+  G+ +    +    +G  
Sbjct: 63  GAGDLTAVEVNLGDQAGAYLT-----PAGDSPVGRTLVAPLGAGELLAGSAVEPTDSG-- 115

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIA 178
                   R  ++ ++      G ++    +D+ + R  +          ++  ++ V +
Sbjct: 116 --------RVVSIAVAPEHMPPG-VEHGATIDLYLTREANPGSAEAAITELIGRDLTVQS 166

Query: 179 IDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
           +                  ++ L    A  LV      +  +VL S
Sbjct: 167 VSAPASGGLSGATSNRYQLSVLLPADVADKLVRVLPTGEPIVVLVS 212


>gi|238750895|ref|ZP_04612392.1| tight adherance operon protein [Yersinia rohdei ATCC 43380]
 gi|238710809|gb|EEQ03030.1| tight adherance operon protein [Yersinia rohdei ATCC 43380]
          Length = 258

 Score = 46.6 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 72/234 (30%), Gaps = 38/234 (16%)

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +  DL  G ++T          +  V           +A+  +D  L++  IL G  I  
Sbjct: 30  ATHDLPSGSLLTKMDYSIK---KSAVPQSSKLIKDDISAIPNIDSYLLKHNILAGSYITQ 86

Query: 111 EKLVDRGNGGLSS-LLPKGKRAATMDISISS-AVGGMIKPNDHVD--------------- 153
           + LV   +   +   L +G+     +I      +   ++  D V                
Sbjct: 87  DMLVSPDSDEFNYHNLQQGQIIYKFNIKQQDEYLLDTLQIGDVVSFQLRALEIDNNKGME 146

Query: 154 ---VVMVRSLSERKPTVTV---VLSNIRVIAIDHNID----------SDERVLVGSTATL 197
              V+   S++ RK        +++ +++I I  + +                      +
Sbjct: 147 NGTVIESNSMNNRKKQSYSLNEIITGVKIIRIKKHSERELSEKKYNNQKTENASAGYIDV 206

Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
            +       L   +    + L      D     S   +++DV  + +  + ++ 
Sbjct: 207 IIKTEDLDVLHIVEKSGDIFLTPSYKPDDKE--SRARNLYDVIPKLRTTRELRG 258


>gi|145596968|ref|YP_001161265.1| SAF domain-containing protein [Salinispora tropica CNB-440]
 gi|145306305|gb|ABP56887.1| SAF domain [Salinispora tropica CNB-440]
          Length = 219

 Score = 46.6 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 80/219 (36%), Gaps = 28/219 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R   + ++ +   + G+ +   V+                  + L     + VG VV
Sbjct: 25  RRMRPGLLGLAVLLIALGGLGSAFAVNAVRA------------TGSYLAVARPVEVGRVV 72

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           + + L  V      V  G            ++ G   +V ++ G  + +E+L D+     
Sbjct: 73  SADDLVTVQ-----VAGGAGLSPVPAGQQGDVVGKRAKVSLVPGTLLTMEQLTDKP---- 123

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
             LL  G++  ++ + ++ A    + P D V +V   + ++ + T T       VI    
Sbjct: 124 --LLAPGQQQLSVGLELAQAPARRLHPGDKVSLVSTPAGNDDRSTTTATRFEATVIDASI 181

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
             + DE         L L      A+ A  +  ++++VL
Sbjct: 182 VGNDDE-----MVVYLALAVRDVPAVAALVAQDRIAVVL 215


>gi|288920028|ref|ZP_06414348.1| SAF domain protein [Frankia sp. EUN1f]
 gi|288348592|gb|EFC82849.1| SAF domain protein [Frankia sp. EUN1f]
          Length = 241

 Score = 46.3 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 16/166 (9%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
            +++  + I V+     LA G  VTP+ L  V     +V    +       A  EL G  
Sbjct: 59  ASDDSGRSIEVVTLTRPLARGTEVTPSDLAVVRV---DVEGSGVRLTAPAAARGELVGRQ 115

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
             + +  G  I  E +        S  LP G     + +S        ++P + V V+  
Sbjct: 116 ALIDLPAGTLISPEMVG-------SVALPTGTVTLGVTVSAQDLPSAAMRPGEQVSVLGY 168

Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203
              +       ++   + V  +     + +    G T      P Q
Sbjct: 169 PLAAGG---PQLLARGVTVTEVQRPQTAGQ---PGQTVVYLQLPEQ 208


>gi|89098203|ref|ZP_01171088.1| hypothetical protein B14911_10592 [Bacillus sp. NRRL B-14911]
 gi|89087060|gb|EAR66176.1| hypothetical protein B14911_10592 [Bacillus sp. NRRL B-14911]
          Length = 326

 Score = 46.3 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 18/170 (10%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK    + + V     ++A II    V    + + EV    P     V+     +    V
Sbjct: 1   MKPWLKITLGVLLSVFVIAFIIVWDTVIKDKIDSVEVAIVRPG----VV-----IEKNQV 51

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           ++ ++L         + +G + D      M ++ G   +  +     +    +       
Sbjct: 52  ISKDLLMMEQRNRATLVEGTVYD------MDDVVGYEAKQKLYGNSILSERDVEFIP--- 102

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV 170
            +    KG+    +  S   A    I+  DH+D  + R   +       V
Sbjct: 103 FTPDPEKGEAIRPIPASWIYASPSTIRRKDHIDFYLFRPEGDTAKPSVNV 152


>gi|119716448|ref|YP_923413.1| SAF domain-containing protein [Nocardioides sp. JS614]
 gi|119537109|gb|ABL81726.1| SAF domain [Nocardioides sp. JS614]
          Length = 224

 Score = 46.3 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              VL+   D+  G  +    L  V    +             +    L+G    V +  
Sbjct: 60  TQEVLVVSNDIKRGETIEAGDLAVVRVSVDPA-----LTPVPGSQKAVLEGSRAAVDLWA 114

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           G  +  + + D        +  +G+    + ++ +      +   D V +V         
Sbjct: 115 GTLLTAQAVTDN------LVPGEGESLVGVSLTPAQMPSEPLYGGDVVRIVTTPGDQGEI 168

Query: 165 PTVTVVLSNIRVIAIDHNIDSDE 187
                V     V+ ++   ++ E
Sbjct: 169 TDEDPVTIEATVVGVNRVEETGE 191


>gi|319790433|ref|YP_004152066.1| flagella basal body P-ring formation protein FlgA [Thermovibrio
           ammonificans HB-1]
 gi|317114935|gb|ADU97425.1| flagella basal body P-ring formation protein FlgA [Thermovibrio
           ammonificans HB-1]
          Length = 321

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 7/102 (6%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71
                        +++    V  +  I     +   V+++   +  G  +TP +++  + 
Sbjct: 162 LVSIGNGYARFIYQVLVNGKVVKKVWIPVRIDRLEKVVVAAVLIPKGTKITPTMVKLASV 221

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           P            +  ++++E+ G + R  IL G  IR   L
Sbjct: 222 PSRKA-------YNAFHSVKEVVGSIARTDILSGKIIRPTML 256


>gi|184200536|ref|YP_001854743.1| hypothetical protein KRH_08900 [Kocuria rhizophila DC2201]
 gi|183580766|dbj|BAG29237.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 224

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
               +  DLAVG  +TP  L  V      V  G++           +   + R  ++   
Sbjct: 57  PYYAAAEDLAVGQRITPEDLTTVDAHLAQVAGGYVPGGQPLQENAVVTQRVARGQLVPAA 116

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            I     +DR   G++   P   +A                P  HVDV + R  +  +  
Sbjct: 117 SIGTADALDRTPVGIALQTPLPAQA---------------DPGAHVDVWVARPKTSGRGF 161

Query: 167 VTV--VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA-QSVAKLSLVL 220
           +    ++    +  +D   D+      G T  + +TP Q   LV A  + AK++LVL
Sbjct: 162 MEPKKLVPGAEIARVDTK-DTALGGSGGVTVHVLVTPSQVGPLVDALGNDAKVTLVL 217


>gi|303238140|ref|ZP_07324676.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
 gi|302594186|gb|EFL63898.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
          Length = 298

 Score = 45.9 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 6/136 (4%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
                 I V+     +    ++T  +LE     + +  D  +      + + E+      
Sbjct: 43  AKEVIEIVVVKPAEGIPAQALLTEKMLEKGKILKSDFKDKMVT----YDKVGEVLNKYSA 98

Query: 100 VPILKGDPIRLEKLVD--RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
             +    P+  ++L +           L K     T+        G ++ P D+V V + 
Sbjct: 99  YFLRYNTPVYFDQLTETKPIRNEWLYSLSKETEVLTVPYDYDKCGGDVLMPGDYVRVRVT 158

Query: 158 RSLSERKPTVTVVLSN 173
           +   E     + V  N
Sbjct: 159 QEYDENTAPSSDVGQN 174


>gi|256833186|ref|YP_003161913.1| SAF domain-containing protein [Jonesia denitrificans DSM 20603]
 gi|256686717|gb|ACV09610.1| SAF domain protein [Jonesia denitrificans DSM 20603]
          Length = 221

 Score = 45.9 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
                 + V ++   LA G VV    + +V+          +       A  E+ G  VR
Sbjct: 40  SPATTVVEVPVATRPLAAGEVVMAQDVSFVSV-------EVLGSPAVSFAGDEVVGAHVR 92

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           V +  G+ +    L        S   P G    ++ ++  S +  ++   DHV VV   S
Sbjct: 93  VGVGLGEVLSGAVLTQ------SPAPPDGFATVSVSVANPSVLS-VVAVGDHVAVVPRDS 145

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSD-------ERVLVGSTATLELTPMQAKALVAAQS 212
            + +  T   VL  + V A                      T  L +   QA  +  A  
Sbjct: 146 DAAQALTSHAVL--LSVSAPGEGSGGALSGVVGSADTSAPVTVLLAVPHEQATEVALAAQ 203

Query: 213 VAKLSLVLRSIADLNP 228
            A++++V+       P
Sbjct: 204 WAEMAIVVLPAQGNQP 219


>gi|146297616|ref|YP_001181387.1| SAF domain-containing protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145411192|gb|ABP68196.1| SAF domain protein [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 219

 Score = 45.9 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 15/132 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           N++++  D+  G  +T + L  V              +       E+    V   I +G+
Sbjct: 41  NIIVASMDIKKGEKITQDKLALVRV-------AAPTPIPAAKNPVEVLNKYVLYDIKRGE 93

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--K 164
           PI   KL  +    +S          +M I I       I   D V ++ V +  +   +
Sbjct: 94  PIIPAKLTVKPPIDVSKGQ------YSMLIKIEPVPSTFIAKYDTVRLMFVSNAVDAKTQ 147

Query: 165 PTVTVVLSNIRV 176
                +L  ++V
Sbjct: 148 KPSIQILDTVQV 159


>gi|238062116|ref|ZP_04606825.1| SAF domain-containing protein [Micromonospora sp. ATCC 39149]
 gi|237883927|gb|EEP72755.1| SAF domain-containing protein [Micromonospora sp. ATCC 39149]
          Length = 219

 Score = 45.9 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 70/213 (32%), Gaps = 29/213 (13%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67
            + ++ +   + G+ A   V+                  + L     + VG  +  + L 
Sbjct: 32  LLGLAVLLIALGGLGAAFAVTSVRA------------TGSYLAVARPVEVGRTLGADDLV 79

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127
            V      V  G          + ++ G+   V +  G  + L +L D        LL  
Sbjct: 80  TVQ-----VAGGQGLRPVPAAQLDDVVGMRAAVALTPGTLLTLGQLTDDP------LLGP 128

Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE 187
           G++   +D++        + P D V +V     S      T       VI      D+  
Sbjct: 129 GQQQLALDLAPGRVPAKRLHPGDRVLLVSTPDRSANGQPATSTRFEATVI------DTAT 182

Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
                    + LT     A+VA  + +++++VL
Sbjct: 183 PSTSSVVVYVALTARDVPAVVALAAQSRIAVVL 215


>gi|332982956|ref|YP_004464397.1| SAF domain-containing protein [Mahella australiensis 50-1 BON]
 gi|332700634|gb|AEE97575.1| SAF domain protein [Mahella australiensis 50-1 BON]
          Length = 211

 Score = 45.9 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 10/159 (6%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV-----LVR 99
              +L +K  +  GM +   +L+ +  P   +  G + DV+                + R
Sbjct: 31  TTGILTAKTTINAGMKIEETMLDTMQVPNTAIPSGAMTDVNDVIGKTAAVTRAPGDIIFR 90

Query: 100 VPILKGDPIRLEK---LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
             + + +P+  E    +       LS+++ +G +   + +  ++A    I      D   
Sbjct: 91  DALSEQEPVLKENETFIAVELPESLSAMIGEGNQINLVCLGNTAAAQQPITETQPTD--Q 148

Query: 157 VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTA 195
             + +E+    T V+ N+ V ++    DS    +  +  
Sbjct: 149 TAAPAEQPQENTNVIENLPVYSVITTTDSTGSNIKYAII 187


>gi|154253002|ref|YP_001413826.1| flagellar basal body P-ring biosynthesis protein FlgA [Parvibaculum
           lavamentivorans DS-1]
 gi|154156952|gb|ABS64169.1| SAF domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 326

 Score = 45.5 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 6/138 (4%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            A    +R  +   +     +T      ++V +   D+  G +V    ++WV  P   V 
Sbjct: 157 GAFTAIVRAPAHDALSPLRRVTGRAYPVLDVPVLVRDMQPGDIVRHQDIDWVRMPANRVS 216

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137
              I       ++  L G+  R P   G+P+RL  +        ++ +     +  + ++
Sbjct: 217 QNMIA------SIDHLVGMSPRHPARAGEPLRLSDMQPPLVVEKNAQVDMTFVSGALTLT 270

Query: 138 ISSAVGGMIKPNDHVDVV 155
                       D V+V+
Sbjct: 271 ARGRALQSGAVGDIVNVL 288


>gi|322514178|ref|ZP_08067243.1| flp operon protein C [Actinobacillus ureae ATCC 25976]
 gi|322119964|gb|EFX91966.1| flp operon protein C [Actinobacillus ureae ATCC 25976]
          Length = 156

 Score = 45.5 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 13/149 (8%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--------TEEVITENPAKFINVLISK 52
           M    L  I    +     G+  +     +  Q              E   K I      
Sbjct: 1   MNYRVLFIISTFILVIGFGGLFMLPNAEDNIPQNETAAASTETTTQPEVATKVITTATLN 60

Query: 53  GDLAVGMVVTPNILEWVA--FPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
            DL  G ++            PE + +F   +  + +   +  L G +    I  G  ++
Sbjct: 61  RDLTKGALIQAEDYTLSELTVPETSPLFSNDLKSLLEAATVPTLQGFVTTENIKAGSLLQ 120

Query: 110 LEKLVDRGNGG--LSSLLPKGKRAATMDI 136
            E L+   +    L S+ P+ + A  + I
Sbjct: 121 PELLITPDDPRFILFSINPQQEVAYRVYI 149


>gi|86739485|ref|YP_479885.1| hypothetical protein Francci3_0772 [Frankia sp. CcI3]
 gi|86566347|gb|ABD10156.1| hypothetical protein Francci3_0772 [Frankia sp. CcI3]
          Length = 257

 Score = 45.5 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 27/194 (13%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
            +       +++K DL  G ++    L  V+   +    G      +     +L G  + 
Sbjct: 54  ASADATRQWVVAKVDLPAGHIIVAGDLATVSARLDERTSGHYYPGSRL---DDLIGATLA 110

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
            P+  G+ +       +             R   + +         + P DHVDV + +S
Sbjct: 111 RPVDTGELVSGPDFAGQNTQP--------TRLVPIIVKA--GRLPTLGPGDHVDVFVFQS 160

Query: 160 LSERKPTVTVVLSNIR--------------VIAIDHNIDSDERVLVGSTATLELTPMQAK 205
            +    T        R              V+     +  ++      + TL +    A 
Sbjct: 161 GAAAPSTTGGDQQAGRSTPAAPAGAGAEALVLHDVEFVSLEKLTSGDRSLTLRVPVDNAI 220

Query: 206 ALVAAQSVAKLSLV 219
             VAA    ++ +V
Sbjct: 221 QAVAASQSERVDVV 234


>gi|218886984|ref|YP_002436305.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757938|gb|ACL08837.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 354

 Score = 45.5 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
           +V P  +   E            L++   +A G V+T + L W   P   V         
Sbjct: 276 MVGPFTISALESEAPARRNARRSLVAARPIAAGAVITRDDLTWKR-PAHGV--------- 325

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKL 113
            P  +  + G   R  I +   ++   L
Sbjct: 326 SPREIDAVLGKRARADIAEDTVLQWSHL 353


>gi|296135677|ref|YP_003642919.1| flagella basal body P-ring formation protein FlgA [Thiomonas
           intermedia K12]
 gi|295795799|gb|ADG30589.1| flagella basal body P-ring formation protein FlgA [Thiomonas
           intermedia K12]
          Length = 242

 Score = 45.5 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V++    L  G V+T   L  V      +  G + D       Q L G ++R  +  G P
Sbjct: 118 VVVVARALQAGHVLTAADLTTVERDAARLPPGAVTD------AQALVGQVLRYSVAAGQP 171

Query: 108 IRLEKLVDRG 117
           +    L    
Sbjct: 172 LVQSMLTGPQ 181


>gi|269128340|ref|YP_003301710.1| hypothetical protein Tcur_4144 [Thermomonospora curvata DSM 43183]
 gi|268313298|gb|ACY99672.1| hypothetical protein Tcur_4144 [Thermomonospora curvata DSM 43183]
          Length = 297

 Score = 45.5 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 52/168 (30%), Gaps = 14/168 (8%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
            + ++ +     +A G  +  + L  V   +  +      +    +   ++      VP+
Sbjct: 69  GQRVSAIQIAQPVAAGQQIPMSALREVQIGDTGI------EYISWSERHKVVTGYAAVPL 122

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
           + G  +    +    +        +G+    + +         ++    V V  V S   
Sbjct: 123 VAGALLTDGMVSPVNDA------AQGRVVVGLALKPGQMPAAKLQTGQRVSVYAVGSGQG 176

Query: 163 RKPTVTVVLSNIRVIAIDHNIDSDERVLVGST-ATLELTPMQAKALVA 209
             P    +LS    I +      DER+    T   + + P  A  L  
Sbjct: 177 PGPRPGTLLS-ADAIVVGIEGGDDERLRGDQTMVDVAVPPADAPQLTQ 223


>gi|289178132|gb|ADC85378.1| hypothetical protein BIF_01377 [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 223

 Score = 45.5 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 42/220 (19%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64
           R M + +S   AL   +  + L                      +++  DL  G+V+   
Sbjct: 37  RHMLLALSVGVALFCTLQCVAL---------------ATATRQAVVAARDLDAGLVIATG 81

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
            +E V  P+ +     +          +  G++ +  I KGD +    +      G    
Sbjct: 82  DVEMVEMPDHDALRHAL------GCPDDAVGLVTQTRIEKGDILLTTDV------GELPQ 129

Query: 125 LPKGKRAATMDISISSAVGGMIKP-NDHVDVVMVRSLSERKPTVT---VVLSNIRVIAID 180
           +P+      + +     +G    P    V++   ++ ++         VV S+  V+A  
Sbjct: 130 VPEHHTVIDVRL----GLGQHSFPIGTVVELRSTQACADDARASPEGCVVSSHAVVMA-- 183

Query: 181 HNIDSDERVLVGSTAT-LELTPMQAKALVAAQSVAKLSLV 219
                      GST T + ++ ++A  ++AAQ    L   
Sbjct: 184 ----QPRLDDTGSTVTQMAMSAVEALQVLAAQEHGTLIAA 219


>gi|240169343|ref|ZP_04748002.1| hypothetical protein MkanA1_08521 [Mycobacterium kansasii ATCC
           12478]
          Length = 221

 Score = 45.1 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 65/191 (34%), Gaps = 12/191 (6%)

Query: 32  VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91
                + +   A    V+++  DL  G  +T N +         + DG   D      + 
Sbjct: 40  AGVAALRSNTDADGSKVVVAARDLRPGSALTYNDIRLETRSAATLPDGSQTD------LG 93

Query: 92  ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151
            + G  +  P  +G+ +   +++       ++    G R   + ++ S+ +  +   +  
Sbjct: 94  AVVGSTLAGPARRGEVLTDVRVLGSRLAESTA--GPGARIVPLHLADSALIDLVRVGDVV 151

Query: 152 VDV--VMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209
             V      S +   P   VV ++  V+ +  +   + +        + L    A  +  
Sbjct: 152 DVVAAPATDSPAAASPVSKVVATDAVVVLV--SAKPELQSHDDRVVLVVLPARLANTVAG 209

Query: 210 AQSVAKLSLVL 220
           A     ++L L
Sbjct: 210 AVLGQTVTLTL 220


>gi|311899773|dbj|BAJ32181.1| hypothetical protein KSE_64220 [Kitasatospora setae KM-6054]
          Length = 223

 Score = 45.1 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 58/215 (26%), Gaps = 27/215 (12%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           ++ + V+ + A   G   +   S                 I V+    D+ +G V++ + 
Sbjct: 28  VLAMAVALIAAGGLGGAVLYNSSGQR--------------IAVVALARDVPMGQVISSDD 73

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
           L       +               +Q   G+     + +G  +    L            
Sbjct: 74  LVVAHIAGDPA-----LRPLDARDLQGTIGLRATTDLKRGALLVKSDLTSDPAT------ 122

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDS 185
             G++   +    S      ++P   + +V   +        T    +     +      
Sbjct: 123 QAGQQIVGVYAKRSQLPATKLQPGLQILIVNAPAGDGGSAGATTRSPDTLTAVVAAVGRP 182

Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           D      +   + + P     L    +  K  ++L
Sbjct: 183 DTD--GSTVIDVAVGPSDGPKLALWVAGGKFQVIL 215


>gi|319653978|ref|ZP_08008071.1| hypothetical protein HMPREF1013_04690 [Bacillus sp. 2_A_57_CT2]
 gi|317394300|gb|EFV75045.1| hypothetical protein HMPREF1013_04690 [Bacillus sp. 2_A_57_CT2]
          Length = 221

 Score = 45.1 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 44/144 (30%), Gaps = 20/144 (13%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              V+++K  +    V+T   +     P E V D    +V+      ++ G      IL 
Sbjct: 36  TTQVVMAKDVIEKDTVITNENVWIFQMPNELVTDEMYRNVN------DVVGKTATQVILP 89

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
              +  + L        +           +  +    + G ++  D V++  + +  +  
Sbjct: 90  SQYVSAKALDQSLLRPTA-----EHEFFPIPNAWLVEIQGTLRRYDQVNISAIYAGKQDA 144

Query: 165 PT---------VTVVLSNIRVIAI 179
                         +L  + V  +
Sbjct: 145 AEVTFNSSLIKSEYILEQVPVAYV 168


>gi|328759525|gb|EGF73133.1| putative membrane protein [Propionibacterium acnes HL099PA1]
          Length = 195

 Score = 45.1 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 61/213 (28%), Gaps = 23/213 (10%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M I       +V  ++  +L+     +              VL    D+A G V+    L
Sbjct: 1   MLIAAGIAIVIVGALLITQLIRSAQTE------------HRVLEVHADVARGEVIRDTDL 48

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
             V   + +            + +  L G      +  G  +    +     G    +  
Sbjct: 49  VSVTVGQVDNVSTV-----PADQLDSLVGKRATADLRAGSLLPAGAI-----GPADVVPA 98

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186
            GK    + ++      G +     + ++   +            ++I+  A        
Sbjct: 99  PGKSLVGLKLAAGQIPIGDLAAGTKLRLIQTSAGGSSTTGQGATNTDIQSWA-ATMASGT 157

Query: 187 ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           +     +   +E+    A  +    S  ++++V
Sbjct: 158 KSTEQVTLINVEVDSRDAARIAQLTSQGRIAVV 190


>gi|156741391|ref|YP_001431520.1| SAF domain-containing protein [Roseiflexus castenholzii DSM 13941]
 gi|156232719|gb|ABU57502.1| SAF domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 298

 Score = 44.7 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 47/185 (25%), Gaps = 21/185 (11%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              V+I+  D+  G  +T + L  +  P           V        + G      I  
Sbjct: 47  TERVIIAARDVPYGQQITIDDLAIIELPLHRP-----IQVAGITDPNIVIGQYATRQIGT 101

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
            D +    L             +      +    +    G I   D +++  +       
Sbjct: 102 NDLLNPGMLSPDPPDEPVYPNGRKLERNMVPAPFALTGVGPITDRDRLNIGFIADDPSLC 161

Query: 165 PTVTVVLSNIRVIAIDHNIDSDERVLVGST----------------ATLELTPMQAKALV 208
                      V+ I          +                    A LE+TP QA AL 
Sbjct: 162 DRARADAPQGTVLEIPSTALVAPEGMRAYACRWMSGIPVLYIEGEIAYLEMTPAQAHALR 221

Query: 209 AAQSV 213
           A Q+ 
Sbjct: 222 ALQAA 226


>gi|220905152|ref|YP_002480464.1| N-acetylneuraminate synthase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869451|gb|ACL49786.1| N-acetylneuraminate synthase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 356

 Score = 44.7 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 10/93 (10%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           V    ++               L++   +  G  VT   L W   P   +          
Sbjct: 274 VGDLSLRALPEEEPARQHARRSLVTARAIPAGTPVTAADLTWKR-PAHGIS--------- 323

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           P    E+ G+  R  + +   +    L +   G
Sbjct: 324 PRNYDEVLGMRARHDLAEDTVLHWSDLENGHKG 356


>gi|302521140|ref|ZP_07273482.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces
           sp. SPB78]
 gi|302430035|gb|EFL01851.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces
           sp. SPB78]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
           +   + KG  +  E L+ +      S++ +GK    + +      GG +KP D V V  V
Sbjct: 75  LGSALPKGSLVVGEMLIAKDK----SVVDEGKALVGLALQEGQYPGG-LKPGDTVAVYHV 129

Query: 158 RS--------LSERKPTVTVVLS-NIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKAL 207
                      S        +LS    V     +    E       T T+ +   +A+AL
Sbjct: 130 GKDAGAPASGESGSSAGNRTLLSAQADVKDAGGSSKGGEALSTGDRTLTVSVPESEAQAL 189

Query: 208 VAAQSVAKLSLVLRS 222
             A SV ++++VL  
Sbjct: 190 AQASSVGEVAVVLVP 204


>gi|284029612|ref|YP_003379543.1| SAF domain-containing protein [Kribbella flavida DSM 17836]
 gi|283808905|gb|ADB30744.1| SAF domain protein [Kribbella flavida DSM 17836]
          Length = 219

 Score = 44.3 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 19/187 (10%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
            +      +  ++ DL  G  +T + L  V     +             A  +L G+++ 
Sbjct: 49  ASADDTTTIWAAERDLPAGTKLTSDDLTTVRVRFTSSEAA----GQYVAADADLKGLVMS 104

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
             +  G+ +              S     +    + I+        I   D VD+ +V  
Sbjct: 105 RAVKAGEFV--------PRRAAVSQAENNRTELPLSIATGRLPAD-ITAGDQVDIWVVPK 155

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL---VAAQSVAKL 216
             +       +   +RV  +D +              + L P+    L   +AA S  + 
Sbjct: 156 --DATQPARKLWDAVRVSQVDASKGVAGGSAR-RQVLVGLEPLDLPKLPGALAAMSSGEP 212

Query: 217 SLVLRSI 223
            LV R  
Sbjct: 213 VLVRRGR 219


>gi|317125617|ref|YP_004099729.1| SAF domain protein [Intrasporangium calvum DSM 43043]
 gi|315589705|gb|ADU49002.1| SAF domain protein [Intrasporangium calvum DSM 43043]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 58/195 (29%), Gaps = 21/195 (10%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++   ++          +  +  +     ++  DL  G  VT      V     +   G+
Sbjct: 36  LMVGIILVLVSATLGARLVASADERTPYFVAVDDLVAGDRVTGATFRRVDVALSDGMGGY 95

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
           +             G  +   +  G+ +    L D G   +           T+    ++
Sbjct: 96  LRADFPVP-----VGKALTRDLRAGELVPSSALSDPGEVDVQR--------VTVRTDATA 142

Query: 141 AVGGMIKPNDHVDVVMVRS-----LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTA 195
            VG  +     VDV +          +      ++L    V+ I    +        ++ 
Sbjct: 143 TVG--LDRGQRVDVYVTPDAHGAGAEDEDSGTELLLEAAAVVEI-VASEGGFGAAARTSV 199

Query: 196 TLELTPMQAKALVAA 210
            L +   Q KA+V A
Sbjct: 200 QLYVPTGQVKAVVEA 214


>gi|163750576|ref|ZP_02157814.1| flagellar basal body P-ring biosynthesis protein [Shewanella
           benthica KT99]
 gi|161329731|gb|EDQ00720.1| flagellar basal body P-ring biosynthesis protein [Shewanella
           benthica KT99]
          Length = 234

 Score = 44.3 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 18/137 (13%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V++++  L  G ++T   +           +  +    Q + + E+ G   +  I    
Sbjct: 113 PVVVARATLGPGDLITKGDIVIKYV------EQTLLRGRQFSNLDEVVGTRAKRRIAPNQ 166

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           PI    L     G   S++ + +    +     +   G +   D + +    S       
Sbjct: 167 PIFSNNLCFVCKGDSVSIIARTE-NFQIKTVGEALQDGNL--GDRIRIKNTYSNKR---- 219

Query: 167 VTVVLSNIRVIAIDHNI 183
                 N RVI +    
Sbjct: 220 -----VNARVIDVGKVE 231


>gi|152990360|ref|YP_001356082.1| flagellar protein FlgA [Nitratiruptor sp. SB155-2]
 gi|151422221|dbj|BAF69725.1| flagellar protein FlgA [Nitratiruptor sp. SB155-2]
          Length = 238

 Score = 44.0 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 12/130 (9%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           NV+++  D+  G ++    L              +        +QE+ G + RV I K  
Sbjct: 117 NVVVAVHDIPRGSLIQKKDLAVQKM---------VTHGKNYPDLQEIIGSVARVNIYKNR 167

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            I    +           +        + I     +G  ++     D++ V+++S  K  
Sbjct: 168 KITRYMIEPNYAVKKRQNVRIIYAKGPIRIE---LLGLALQNGKRGDIIKVKNISTNKVL 224

Query: 167 VTVVLSNIRV 176
              VLS+  V
Sbjct: 225 ECKVLSDGVV 234


>gi|7662346|ref|NP_055728.1| ADNP homeobox protein 2 [Homo sapiens]
 gi|74757998|sp|Q6IQ32|ADNP2_HUMAN RecName: Full=ADNP homeobox protein 2; AltName: Full=Zinc finger
           protein 508
 gi|47938799|gb|AAH71589.1| ADNP homeobox 2 [Homo sapiens]
 gi|119587050|gb|EAW66646.1| KIAA0863 protein, isoform CRA_a [Homo sapiens]
 gi|119587051|gb|EAW66647.1| KIAA0863 protein, isoform CRA_a [Homo sapiens]
 gi|158258569|dbj|BAF85255.1| unnamed protein product [Homo sapiens]
 gi|167773575|gb|ABZ92222.1| ADNP homeobox 2 [synthetic construct]
 gi|168269504|dbj|BAG09879.1| zinc finger protein 508 [synthetic construct]
          Length = 1131

 Score = 44.0 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 13/163 (7%)

Query: 34  TEEVITENPAKFINVLISKGDLAVG--MVVTPNILEW-VAFPEENVFDGFIDDVHQPNAM 90
           T+ V   N      VL     +  G    V+P +L    A P   +  G +    Q    
Sbjct: 404 TQPVGPINRPVGPGVLPVSPSVTPGVLQAVSPGVLSVSRAVPSGVLPAGQMTPAGQMTPA 463

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI--SISSAVGGMIKP 148
             + G      +L    +    ++  G    S +LP G+ A  + +  +      G++ P
Sbjct: 464 GVIPGQTATSGVLPTGQMVQSGVLPVGQTAPSRVLPPGQTA-PLRVISAGQVVPSGLLSP 522

Query: 149 NDHVDVVMVRSLSERK-----PTVTVVLSNIRVIAIDHNIDSD 186
           N  V    V  +++            V+S   V+ +   +   
Sbjct: 523 NQTVSSSAVVPVNQGVNSGVLQLSQPVVSG--VLPVGQPVRPG 563


>gi|40788964|dbj|BAA74886.2| KIAA0863 protein [Homo sapiens]
          Length = 1181

 Score = 44.0 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 13/163 (7%)

Query: 34  TEEVITENPAKFINVLISKGDLAVG--MVVTPNILEW-VAFPEENVFDGFIDDVHQPNAM 90
           T+ V   N      VL     +  G    V+P +L    A P   +  G +    Q    
Sbjct: 454 TQPVGPINRPVGPGVLPVSPSVTPGVLQAVSPGVLSVSRAVPSGVLPAGQMTPAGQMTPA 513

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI--SISSAVGGMIKP 148
             + G      +L    +    ++  G    S +LP G+ A  + +  +      G++ P
Sbjct: 514 GVIPGQTATSGVLPTGQMVQSGVLPVGQTAPSRVLPPGQTA-PLRVISAGQVVPSGLLSP 572

Query: 149 NDHVDVVMVRSLSERK-----PTVTVVLSNIRVIAIDHNIDSD 186
           N  V    V  +++            V+S   V+ +   +   
Sbjct: 573 NQTVSSSAVVPVNQGVNSGVLQLSQPVVSG--VLPVGQPVRPG 613


>gi|227487790|ref|ZP_03918106.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227542431|ref|ZP_03972480.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227092292|gb|EEI27604.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227181629|gb|EEI62601.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 192

 Score = 44.0 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 52/171 (30%), Gaps = 32/171 (18%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+     ++ G  + P+     + P+  + D  + D           G +    + +G 
Sbjct: 38  TVVTLSRTVSAGETLAPSDFSRTSVPQSLIPDNAVTDD------TAAHGNVAVTTLSRGQ 91

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +        G      + P G  +  + ++   A   ++K  D V +V     S     
Sbjct: 92  ILTSTSYTGEG------ITPAGLTSVPLRLADP-ATSELLKHGDSVTIVA-GDGSIVCEK 143

Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
            TV+L                      T  + +    A A+ +A     ++
Sbjct: 144 ATVILPR------------------KDTVLVAMDSDLAPAVASATLNGPVT 176


>gi|309811232|ref|ZP_07705024.1| SAF domain protein [Dermacoccus sp. Ellin185]
 gi|308434844|gb|EFP58684.1| SAF domain protein [Dermacoccus sp. Ellin185]
          Length = 760

 Score = 43.6 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 13/88 (14%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++  D+A G  +T   +   +        G      QPN ++ L G  +R PI  GD  
Sbjct: 408 LVATRDIAAGEKLTRADVTIKS-------PG---RGLQPNRLEALVGRTMRRPIESGDFF 457

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDI 136
               L D    G +      KR   + +
Sbjct: 458 YATDLTDAVAHGRAYEF---KRPWGLPV 482


>gi|294786498|ref|ZP_06751752.1| LPXTG-motif cell wall anchor domain protein [Parascardovia
           denticolens F0305]
 gi|315226071|ref|ZP_07867859.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
 gi|294485331|gb|EFG32965.1| LPXTG-motif cell wall anchor domain protein [Parascardovia
           denticolens F0305]
 gi|315120203|gb|EFT83335.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
          Length = 274

 Score = 43.6 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 64/222 (28%), Gaps = 46/222 (20%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64
           RL  I  + + +L+A  +    ++    Q+               ++  D++ G  + P 
Sbjct: 66  RLKKIATAFLISLMAFCLIQIGLTVSSNQSA-------------FVAARDISQGQEIHPG 112

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
            +  V      +            +   + G    +P+ KGDP+    +    +      
Sbjct: 113 DIAQVRMRTNPLA------TRTVKSASAVLGRRAAIPLRKGDPLVPTAVKAAEDYPADYT 166

Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-----VLSNIRVIAI 179
                   T+ ++ +S +   + P   VD+V  ++ S     V           + +  +
Sbjct: 167 --------TIALTPASQIS-SLSPGQKVDLVTEKTESCHASPVETGKPGMGTQGVEICYV 217

Query: 180 DHNIDSDERVLVGST-------------ATLELTPMQAKALV 208
                   R     T                 L    A AL 
Sbjct: 218 AKGAIVLGRPGEKRTAFSLTDSDQSRKEIVFALPVESALALT 259


>gi|294339847|emb|CAZ88210.1| putative Flagella basal body P-ring formation protein flgA
           [Thiomonas sp. 3As]
          Length = 244

 Score = 43.6 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V++    L  G V+T   L  V      +  G + D       Q L G ++R  +  G P
Sbjct: 120 VVVVARALQAGHVLTAADLTMVERDATRLPPGAVTD------AQALVGQVLRYSVAAGQP 173

Query: 108 IRLEKLVDRG 117
           +    L    
Sbjct: 174 LAQSMLTGPQ 183


>gi|225023053|ref|ZP_03712245.1| hypothetical protein CORMATOL_03101 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944276|gb|EEG25485.1| hypothetical protein CORMATOL_03101 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 216

 Score = 43.6 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/153 (10%), Positives = 48/153 (31%), Gaps = 4/153 (2%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           + I+V++   D+A G  +T   +  V   E  +    +           +        + 
Sbjct: 39  QHISVVVYSRDVAAGSRITAADVTVVHVSESVLPQDRLATTDAAVGNIVVASRSRGAMVS 98

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
             D +    +        S+          + ++  + +  +++P D + ++   + ++ 
Sbjct: 99  AADFVDSALVSQTMTNTTSNDAGVKTHMVPITLADPT-LASLLRPGDTITII---TAADD 154

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT 196
                V+ +  +VI              G+   
Sbjct: 155 NSAPRVIAAGGKVIFATTKATDFPGATPGTVLV 187


>gi|293604999|ref|ZP_06687395.1| flagella basal body P-ring formation protein FlgA [Achromobacter
           piechaudii ATCC 43553]
 gi|292816604|gb|EFF75689.1| flagella basal body P-ring formation protein FlgA [Achromobacter
           piechaudii ATCC 43553]
          Length = 238

 Score = 43.6 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 6/106 (5%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
            ++   ++ G  +TP+ L        ++  G I D       Q + G+     I  G P+
Sbjct: 117 YVASRMISAGQALTPDDLAPRDGDLVSLPPGAITDP------QAVVGMSAAFRINAGQPV 170

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           R   L +  +    + +    R     +S          P   V V
Sbjct: 171 RSSSLRNAQSVMRGANVRINARGNGFVVSSEGQALDNAAPGAVVQV 216


>gi|170742324|ref|YP_001770979.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           sp. 4-46]
 gi|168196598|gb|ACA18545.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           sp. 4-46]
          Length = 347

 Score = 43.6 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 6/95 (6%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
              LV+    Q    ++    + + V +    LA G  V P  +     P +      + 
Sbjct: 184 VSGLVTVGERQASLRVSGQVIEMVEVAVLARPLARGETVGPQDVTLERRPRDAAPPDGVA 243

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           D         L G + +  +  G P+R   L    
Sbjct: 244 DAAS------LVGQVAQRALAPGQPLRSADLARPD 272


>gi|149191168|ref|ZP_01869426.1| flagellar basal body P-ring biosynthesis protein [Vibrio shilonii
           AK1]
 gi|148835006|gb|EDL51985.1| flagellar basal body P-ring biosynthesis protein [Vibrio shilonii
           AK1]
          Length = 235

 Score = 43.6 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 7/106 (6%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           + +   L  G  ++P+ +                D        E+ G  ++  + KG+ +
Sbjct: 115 VTADKALRKGQRLSPSDIAIK-------PIKLYTDKKVFFKPSEVVGSKLKRSVKKGELL 167

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +L    +      +    ++ T+ +             D V V
Sbjct: 168 TTSRLYLDYDVEKGQAVDVVYQSETIRLETLGTALESGLVGDTVSV 213


>gi|326792825|ref|YP_004310646.1| hypothetical protein Clole_3768 [Clostridium lentocellum DSM 5427]
 gi|326543589|gb|ADZ85448.1| hypothetical protein Clole_3768 [Clostridium lentocellum DSM 5427]
          Length = 304

 Score = 43.2 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 8/134 (5%)

Query: 38  ITENPAKFINVLISKGD--LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
             E+    + V+  K    L +  +VT   +E             +        +  + G
Sbjct: 41  AAEDTRNTVAVVRIKNPEGLQMDALVTEEDVEKYNVIRTEYNPDMVLAED----IDNVIG 96

Query: 96  VLVRVPILKGDPIRLEKLV--DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153
           +     + K   +  ++L             L +     T+  +     G ++ P D V 
Sbjct: 97  MYTLYYLRKDSIVYKDQLGGERPITNEWLYQLGEDDEVITLQYNYLKCGGDILMPGDRVR 156

Query: 154 VVMVRSLSERKPTV 167
           +     LSE+    
Sbjct: 157 IRATYELSEQDSGT 170


>gi|304315163|ref|YP_003850310.1| hypothetical protein MTBMA_c14100 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588622|gb|ADL58997.1| conserved hypothetical protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 436

 Score = 43.2 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 80/247 (32%), Gaps = 40/247 (16%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLI---SKGDLAVGMVVTPN 64
            +V   +  ++AG     LV   + +  +         ++ L       D     ++   
Sbjct: 117 ALVFGVILMVLAGAGYYFLVYQPYQEVLQNAKATKIAEVDALFKGPLATDPQKQAILAQI 176

Query: 65  ILEWVAFPEENVFDGFI---------DDVHQPNAMQELDGVLVRVPILKGD-------PI 108
                  PEE +    +             Q N  ++  G ++                 
Sbjct: 177 DAAVT--PEEALAVDVVGPATQSWRTYQNQQINIKKDRVGRVMVNYTDNDQQKRVIMKVA 234

Query: 109 RLEKLVDRGNGGLSS---LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
             +K V + +  + +   +      A  + I+   A GG+I   + VDV + ++ +E   
Sbjct: 235 DAKKFVSQADATVLANTQIQTPDTVAVPIMITRLQAAGGLISVGNMVDVYLNQNATENNT 294

Query: 166 T---VTVVLSNIRVIAIDHNIDSD--------ERVLVGSTATLE-----LTPMQAKALVA 209
           +    T  +S   V+AI  + DS          + L  +T T +      +    + L+ 
Sbjct: 295 SAAASTPRISGATVLAILRSKDSGTVDARILNTQRLTLNTITSQSENERTSSTDVEQLLR 354

Query: 210 AQSVAKL 216
           A +   L
Sbjct: 355 AAASGGL 361


>gi|255609741|ref|XP_002539089.1| Flagella basal body P-ring formation protein flgA precursor,
           putative [Ricinus communis]
 gi|223508772|gb|EEF23295.1| Flagella basal body P-ring formation protein flgA precursor,
           putative [Ricinus communis]
          Length = 163

 Score = 43.2 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 6/106 (5%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++   +A G  +T + LE          +G   +       +++ G    + I  G+ +
Sbjct: 42  VVATHPIARGQAITQDDLELQTRDLTQYPNGTFSNP------EQIIGRTATLNIPAGEVL 95

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           R E+L           +    + A   +S      G       V V
Sbjct: 96  RPEQLKAALVIRQGQQVTLVAQGAGFKVSSEGTAMGNAATGQVVAV 141


>gi|212709488|ref|ZP_03317616.1| hypothetical protein PROVALCAL_00530 [Providencia alcalifaciens DSM
           30120]
 gi|212687826|gb|EEB47354.1| hypothetical protein PROVALCAL_00530 [Providencia alcalifaciens DSM
           30120]
          Length = 223

 Score = 43.2 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 37/181 (20%), Gaps = 60/181 (33%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
                ++  ++  G  +    +         +  G   D         L G L    I  
Sbjct: 97  TGQYYVATRNIQRGETIEFVDIGTKKGLIHQLPSGASTDKM------ALRGTLALRNITA 150

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---- 160
           G       +                                IK    V V          
Sbjct: 151 GQTFTNSMVRRPWA---------------------------IKAGQTVYVFATGDNFSVK 183

Query: 161 -SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
              R     V+  NIRV  I+  + + E                      AQ    + + 
Sbjct: 184 YEGRAINNAVIGENIRVRLINGQVVNGE----------------------AQENGSVHVA 221

Query: 220 L 220
           L
Sbjct: 222 L 222


>gi|313837841|gb|EFS75555.1| SAF domain protein [Propionibacterium acnes HL037PA2]
 gi|314929719|gb|EFS93550.1| SAF domain protein [Propionibacterium acnes HL044PA1]
 gi|314972768|gb|EFT16865.1| SAF domain protein [Propionibacterium acnes HL037PA3]
          Length = 217

 Score = 43.2 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 65/217 (29%), Gaps = 23/217 (10%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R + +       +V  ++  +L+     +              VL  + D+  G V+ 
Sbjct: 19  RRRPVFVAAGIAIVVVGALLIAQLIHAGQTEN------------RVLEVRSDVGRGEVIR 66

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L  V   +              + +  L G    V +  G  +    +     G   
Sbjct: 67  DTDLVAVTVGQVGNVSTV-----PADQLDALVGKRAAVDLRSGSLLSAGAI-----GAAD 116

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
           ++   GK    + ++      G +     + ++   +L+          +N +       
Sbjct: 117 TVPAPGKSLVGLKLAPGQVPIGDLTAGAKLRLIQTSALNGSATATDAANTNGQSWD-ATM 175

Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
             S +     +   +E+   +A  +    S  ++++V
Sbjct: 176 AASTKGTDQVTLVNVEVKSGEAARIAQLTSQGRIAVV 212


>gi|261856134|ref|YP_003263417.1| flagella basal body P-ring formation protein FlgA [Halothiobacillus
           neapolitanus c2]
 gi|261836603|gb|ACX96370.1| flagella basal body P-ring formation protein FlgA [Halothiobacillus
           neapolitanus c2]
          Length = 255

 Score = 43.2 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 33/119 (27%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +       +N +     LA G  ++   L           + ++          E  G +
Sbjct: 123 VPARIQTMVNAISLARPLAPGTRISAEDLTTTPVNANQQVNAYLTSPD------EAIGQI 176

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156
           V  P+  G  +  + L                            +  +I   DHV V+ 
Sbjct: 177 VTRPMQAGQILTQQDL---------------------------GIAKVIHRGDHVTVIA 208


>gi|158317577|ref|YP_001510085.1| SAF domain-containing protein [Frankia sp. EAN1pec]
 gi|158112982|gb|ABW15179.1| SAF domain protein [Frankia sp. EAN1pec]
          Length = 258

 Score = 42.8 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 29/195 (14%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP-NAMQELDGVLV 98
               +    +++  DL  G +V  + L           DG + D + P +   EL G  +
Sbjct: 55  ATADRTRQWVVAAADLPAGHIVVDSDLTT----ATAHLDGAMSDRYYPGDRRSELLGATL 110

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
             P+  G+ +        G            R   + +         + P DHVDV + +
Sbjct: 111 ARPVSSGELLSGADFAGEGAAA--------TRLVPVIVKA--GRVPDLSPGDHVDVFVYQ 160

Query: 159 SL-----SERKPTVTVVLSN---------IRVIAIDHNIDSDERVLVGSTATLELTPMQA 204
                                        I+V+     +  D       + +L +    A
Sbjct: 161 PGAAAPPETGGDPAQPAQEGQAVAGAGVEIQVLHDVEFVAQDRLNSGDRSLSLRVPVDDA 220

Query: 205 KALVAAQSVAKLSLV 219
              VAA    ++ +V
Sbjct: 221 IRAVAASQSERVDVV 235


>gi|295129568|ref|YP_003580231.1| SAF domain protein [Propionibacterium acnes SK137]
 gi|291376368|gb|ADE00223.1| SAF domain protein [Propionibacterium acnes SK137]
          Length = 212

 Score = 42.8 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 30/222 (13%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  RL+ I V        G       + H  Q              VL+    +  G +V
Sbjct: 21  RSPRLIVIGVLCACLGGLGGAVAWHRASHADQ--------------VLVMTRAVGQGDIV 66

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               +   +   +             + + ++ G    V +  G  +    + +      
Sbjct: 67  RNADIGLTSVAVDRAVATI-----PASQLDKIVGRHALVDLSPGQLLGSHSVGE------ 115

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
              +  G+    + ++        +     V V+      +      +  ++  V+A   
Sbjct: 116 -LRVAPGRARIGLKLAAGRLPTVSLPAGARVTVIETSPDKDTGTVSNLSTADAVVVAAPK 174

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
             +            +E+    A  L    S+ +++LV R  
Sbjct: 175 ATNDHGNW----LVDVEVDSGNAARLADLASLDRIALVERGQ 212


>gi|328908302|gb|EGG28061.1| SAF domain protein [Propionibacterium sp. P08]
          Length = 219

 Score = 42.8 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   +  G V+  + L  +      +            A+ +++G    V I +G 
Sbjct: 62  EVVVAARAIEGGRVIQRSDLRTIRIDPGILPHEA-------AALAQVEGRQASVRITEGT 114

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +    ++     G       GK    + ++ SS V GM++    V VV           
Sbjct: 115 ILTTSAVLSGSATG------SGKALVGIHLADSSMV-GMLQVGQQVSVVSPSEDGTPHVL 167

Query: 167 VT 168
             
Sbjct: 168 TR 169


>gi|257791659|ref|YP_003182265.1| N-acylneuraminate-9-phosphate synthase [Eggerthella lenta DSM 2243]
 gi|317487875|ref|ZP_07946467.1| NeuB family protein [Eggerthella sp. 1_3_56FAA]
 gi|325830571|ref|ZP_08163992.1| SAF domain protein [Eggerthella sp. HGA1]
 gi|257475556|gb|ACV55876.1| N-acylneuraminate-9-phosphate synthase [Eggerthella lenta DSM 2243]
 gi|316913001|gb|EFV34518.1| NeuB family protein [Eggerthella sp. 1_3_56FAA]
 gi|325487317|gb|EGC89759.1| SAF domain protein [Eggerthella sp. HGA1]
          Length = 365

 Score = 42.8 bits (99), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 10/99 (10%)

Query: 19  AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
                  L+    ++  E  T   A     L++  D+  G V+   +L +   P   +  
Sbjct: 269 GVCFVETLLGDSSLRHSESETAARANARRSLVAAADIPAGSVIDKGMLTFKR-PGTGISP 327

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
             +          E+ G + RV I     I +  L D  
Sbjct: 328 SLV---------GEVVGRVARVDIPADVLIDMTMLSDSR 357


>gi|229819753|ref|YP_002881279.1| SAF domain protein [Beutenbergia cavernae DSM 12333]
 gi|229565666|gb|ACQ79517.1| SAF domain protein [Beutenbergia cavernae DSM 12333]
          Length = 219

 Score = 42.8 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 63/209 (30%), Gaps = 23/209 (11%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           +    L+    V       +   + + V  +  DLA G  +  + L       +     +
Sbjct: 28  LGVGLLLVAASVALGTWAVQAADESVAVYAATDDLAPGDRLDADDLTVRQIRWDGEGGTY 87

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
           +              V+V  P+  G+      LV     G +  +     A  +      
Sbjct: 88  LLAEDGVPDD-----VVVTRPVGAGE------LVPSSATGPADAVDTRPVAMPVP----- 131

Query: 141 AVGGMIKPNDHVDVVM-----VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTA 195
             G  I    HVDV            +      +V+ N+ V ++    D+      G  A
Sbjct: 132 -AGSGIGAGVHVDVWAVPPSSTGDDGDEAAVPELVVENVLVASV-TEDDTLFASSSGQVA 189

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIA 224
            + +   Q   ++A  +    +L++    
Sbjct: 190 RVLVPADQVGDVLAVTAAGGSTLIVERPG 218


>gi|206889894|ref|YP_002249847.1| flagella basal body P-ring formation protein FlgA
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741832|gb|ACI20889.1| flagella basal body P-ring formation protein FlgA
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 231

 Score = 42.8 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 15/135 (11%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
             V I++  L  G V+T   +  +  P   +  G I D +       L G +V+  + +G
Sbjct: 106 TRVYITQIPLKRGEVITEEKIMEIKQPLSRLPVGAITDKNL------LIGKVVKRSLTRG 159

Query: 106 DPIRLEKLVD----RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
             I+ + L      +    +  ++  G+    +          ++  N  V         
Sbjct: 160 LIIKEDYLYSGMPVKKGSKVDVIINTGQ--VMIMTEGVLKSDAVVGGNARVQCFQTGKEI 217

Query: 162 ERKPTVTVVLSNIRV 176
             K         +RV
Sbjct: 218 VGKLVGK---DKVRV 229


>gi|307945667|ref|ZP_07661003.1| flagella basal body P-ring formation protein FlgA [Roseibium sp.
           TrichSKD4]
 gi|307771540|gb|EFO30765.1| flagella basal body P-ring formation protein FlgA [Roseibium sp.
           TrichSKD4]
          Length = 326

 Score = 42.8 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 48/143 (33%), Gaps = 9/143 (6%)

Query: 42  PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101
             + + V      L  G V+    +     P   V    + D  Q   +    G+   +P
Sbjct: 184 AQEMLEVTTLLQPLRSGQVLRLEDMTTTRLPRTKVPANAVTDPKQIAGLAARTGLRANMP 243

Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           +++ D  +   +       ++ ++        +     +   G +   D +D+   ++L 
Sbjct: 244 LVRNDFAKPVLISRGEKVSITYMVGG----MKLTTRGRAMDDGAL--GDPIDI---KNLD 294

Query: 162 ERKPTVTVVLSNIRVIAIDHNID 184
             +    +V S  +V+A   +  
Sbjct: 295 SGRIVPAMVRSRGQVLAQPASAQ 317


>gi|50841530|ref|YP_054757.1| hypothetical protein PPA0039 [Propionibacterium acnes KPA171202]
 gi|289424493|ref|ZP_06426276.1| SAF domain protein [Propionibacterium acnes SK187]
 gi|289427324|ref|ZP_06429037.1| SAF domain protein [Propionibacterium acnes J165]
 gi|50839132|gb|AAT81799.1| putative membrane protein [Propionibacterium acnes KPA171202]
 gi|289155190|gb|EFD03872.1| SAF domain protein [Propionibacterium acnes SK187]
 gi|289159254|gb|EFD07445.1| SAF domain protein [Propionibacterium acnes J165]
 gi|332674438|gb|AEE71254.1| hypothetical protein PAZ_c00410 [Propionibacterium acnes 266]
          Length = 212

 Score = 42.8 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 30/222 (13%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  RL+ I V        G       + H  Q              VL+    +  G +V
Sbjct: 21  RSPRLIVIGVLCACLGGLGGAVAWHRASHADQ--------------VLVMTRAVGQGDIV 66

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               +   +   +             + + ++ G    V +  G  +    + +      
Sbjct: 67  RNADIGLTSVAVDRAVATI-----PASQLDKIVGRHALVDLSPGQLLGSHSVGE------ 115

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
              +  G+    + ++        +     V V+      +      +  ++  V+A   
Sbjct: 116 -LRVAPGRARIGLKLAAGRLPTVSLPAGARVTVIETSPDKDTGTVSNLSTADAVVVAAPK 174

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
             +            +E+    A  L    S+ +++LV R  
Sbjct: 175 ATNDHGSW----LVDVEVDSGNAARLADLASLDRIALVERGQ 212


>gi|50841975|ref|YP_055202.1| hypothetical protein PPA0492 [Propionibacterium acnes KPA171202]
 gi|50839577|gb|AAT82244.1| hypothetical protein PPA0492 [Propionibacterium acnes KPA171202]
          Length = 219

 Score = 42.8 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 56/175 (32%), Gaps = 21/175 (12%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   +  G V+  + L  V      +             + +++G    + I +G 
Sbjct: 62  EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 114

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +    ++        S +  GK    + ++ SS V GM++    V VV           
Sbjct: 115 ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDG----- 162

Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLV 219
              VL+   +I               ST    +      A A+  A     L LV
Sbjct: 163 TPHVLTRGAIIRSLPTSGGGLIQGSPSTELVVVSTGSTDAAAIAVAGQGQPLGLV 217


>gi|256833036|ref|YP_003161763.1| SAF domain-containing protein [Jonesia denitrificans DSM 20603]
 gi|256686567|gb|ACV09460.1| SAF domain protein [Jonesia denitrificans DSM 20603]
          Length = 241

 Score = 42.8 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 64/197 (32%), Gaps = 20/197 (10%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
            ++   L  G  +T   L+ V        + ++            +G++  VP+ +G   
Sbjct: 58  FVAARTLQPGDAITEADLQAVDVELGQHLNNYLT------PETMGEGLVAVVPVHQGQ-- 109

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168
               LV   + G ++ +     A  +       +   + P   +D+      +       
Sbjct: 110 ----LVAVTSTGSAADVDSRIMAVPIT----GQLPAQVVPGSTIDLWYAPEATPTGEVGD 161

Query: 169 VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQA---KALVAAQSVAKLSLVLRSIAD 225
                   + +    D+D    V  T+ L +   Q+     L A Q+   L+ +     D
Sbjct: 162 P-DQVASGLTVSQIPDTDSVFGVSGTSYLHVVVPQSDIPAVLAATQAKGALTALPVPHGD 220

Query: 226 LNPSSSEDSDVWDVQEE 242
            +P+ + D    +   E
Sbjct: 221 GSPAPASDGSPSNNTAE 237


>gi|282853081|ref|ZP_06262418.1| SAF domain protein [Propionibacterium acnes J139]
 gi|282582534|gb|EFB87914.1| SAF domain protein [Propionibacterium acnes J139]
          Length = 212

 Score = 42.8 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 63/222 (28%), Gaps = 30/222 (13%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  RL+ I V        G       + H  Q              VL+    +  G +V
Sbjct: 21  RSPRLIVIGVLCACLGGLGGAVAWHRASHADQ--------------VLVMTRAVGQGDIV 66

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
               +   +   +             + + ++ G    V +  G  +    + +      
Sbjct: 67  RNADIGLTSVAVDRAVATI-----PASQLDKIVGRHALVDLSPGQLLGSHSVGE------ 115

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
              +  G+    + ++        +    HV V+      +      +  ++  V+A   
Sbjct: 116 -LRVAPGRARIGLKLAAGRLPTVSLPAGAHVTVIETSPDKDTGTVSNLSTADAVVVAAPK 174

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
             +            +E+    A  L    S+ +++LV R  
Sbjct: 175 ATNDHGSW----LVDVEVDSGNAARLADLASLDRIALVERGQ 212


>gi|284031219|ref|YP_003381150.1| hypothetical protein Kfla_3290 [Kribbella flavida DSM 17836]
 gi|283810512|gb|ADB32351.1| hypothetical protein Kfla_3290 [Kribbella flavida DSM 17836]
          Length = 241

 Score = 42.8 bits (99), Expect = 0.055,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 56/202 (27%), Gaps = 27/202 (13%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   L  + V  +    AG                +I  N  +    + +K  L  G ++
Sbjct: 32  RRPALAALAVILILLGAAG--------------SALIAINNGERQYYVAAKVPLPPGHLI 77

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             +              G    +   + ++ LDG      I  G  +             
Sbjct: 78  DKDNDLTR-----GDLAGATGRLVPWSELERLDGQYTTSWIYPGQFLAEGSTTRDP---- 128

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA-ID 180
              +P+G     + +    A    ++  D V ++ V + ++      ++     + +   
Sbjct: 129 ---VPEGGALVGISLEGGRAPSEELQQGDIVRLIRVPAANQDGGVPQIIAPAASIKSKSG 185

Query: 181 HNIDSDERVLVGSTATLELTPM 202
              D+          T+ +   
Sbjct: 186 ALTDAKTNAGTTLNVTVLVPDE 207


>gi|297200321|ref|ZP_06917718.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|197709437|gb|EDY53471.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 177

 Score = 42.4 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVG 192
            + I+ ++ V  +++P D VDV+     +       VV    RV  +   +  D     G
Sbjct: 93  PVRIADAATV-RLLRPGDRVDVIAAEESALGGD-ARVVARGARVTKVPEPV--DGATEGG 148

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVL 220
           +   L +    A  L  A + A+L++ L
Sbjct: 149 ALVVLSVPRSTAARLAGASATARLAVTL 176


>gi|289641009|ref|ZP_06473178.1| SAF domain protein [Frankia symbiont of Datisca glomerata]
 gi|289509129|gb|EFD30059.1| SAF domain protein [Frankia symbiont of Datisca glomerata]
          Length = 271

 Score = 42.4 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 48/181 (26%), Gaps = 16/181 (8%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++  DL  G VV    L   +    ++               EL G  +  P+  G+  
Sbjct: 69  VVAAADLPAGHVVVAADLTTAS---AHLRSTTAARYFPGERRSELVGATLARPVSAGELF 125

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168
                V               R  ++ +         + P DHVD+ +++         T
Sbjct: 126 SGADFVLDDVRP--------TRLVSIVVKD--GRAPALTPGDHVDIFVLQRSGPAGVGAT 175

Query: 169 VVLSNIRVIAIDHNIDSDERVLVGSTATLEL-TPMQAKALVAAQSVAKLSLVLRSIADLN 227
                    A         +     T  L L           A      +L LR   +L 
Sbjct: 176 GTGVGAPGAAQATGQVPVAQSGSAGTEVLVLHDVEFIARTTLAA--GSYALTLRVPVELA 233

Query: 228 P 228
            
Sbjct: 234 I 234


>gi|313497782|gb|ADR59148.1| N-acetyl neuramic acid synthetase NeuB [Pseudomonas putida BIRD-1]
          Length = 632

 Score = 42.4 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +I+  D+  G ++   +L   + P + +             + EL G  VR  I++GD +
Sbjct: 290 VIAARDIPCGALLEQGMLRIAS-PGQGLPPY---------RLPELLGKPVRRDIVQGDFL 339

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148
               L ++      +     +    +           I+P
Sbjct: 340 FESDLQEQQPEQKLAFDMPVRWGVPVRYHDFRDYRRRIEP 379


>gi|297161942|gb|ADI11654.1| SAF domain protein [Streptomyces bingchenggensis BCW-1]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 14/171 (8%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
            ++     +   VL+   D+  G V+T   L  V    E         V        + G
Sbjct: 27  ALVASAVGERGQVLVLARDVPAGHVLTAGDLRQVEVASE-------TGVVAAAGRSGVLG 79

Query: 96  VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
              RVP++ G  +   +      GG  +  PKG+      +   SA  G+++  D V V+
Sbjct: 80  RRARVPLVAGSLLAPGQF-----GGRRAFPPKGQSEVAFAVEAGSASPGVVR-GDRVAVL 133

Query: 156 MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKA 206
                     T     ++  V+     + + E        T+ +     + 
Sbjct: 134 E-GPGGTDGGTGDGAAASAPVVGTVTGMKAPESPGGVRVVTVLVETGAVRR 183


>gi|219682833|ref|YP_002469216.1| cation transport ATPase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219620483|gb|ACL28640.1| cation transport ATPase [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 192

 Score = 42.4 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 42/220 (19%)

Query: 5   RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64
           R M + +S   AL   +  + L                      +++  DL  G+V+   
Sbjct: 6   RHMLLALSVGVALFCTLQCVAL---------------ATATRQAVVAARDLDAGLVIATG 50

Query: 65  ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124
            +E V  P+ +     +          +  G++ +  I KGD +    +      G    
Sbjct: 51  DVEMVEMPDHDALRHAL------GCPDDAVGLVTQTRIEKGDILLTTDV------GELPQ 98

Query: 125 LPKGKRAATMDISISSAVGGMIKP-NDHVDVVMVRSLSERKPTVT---VVLSNIRVIAID 180
           +P+      + +     +G    P    V++   ++ ++         VV S+  V+A  
Sbjct: 99  VPEHHTVIDVRL----GLGQHSFPIGTVVELRSTQACADDARASPEGCVVSSHAVVMA-- 152

Query: 181 HNIDSDERVLVGSTAT-LELTPMQAKALVAAQSVAKLSLV 219
                      GST T + ++ ++A  ++AAQ    L   
Sbjct: 153 ----QPRLDDTGSTVTQMAMSAVEALQVLAAQEHGTLIAA 188


>gi|218778845|ref|YP_002430163.1| flagella basal body P-ring formation protein FlgA
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760229|gb|ACL02695.1| Flagella basal body P-ring formation protein FlgA
           [Desulfatibacillum alkenivorans AK-01]
          Length = 324

 Score = 42.4 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   L    V+T   +         + DG + D       +E+ G+ +R  +  G+
Sbjct: 200 PVVVATRKLDRMDVLTAGDVTVEMRNLSRLPDGVVTDP------KEVRGMRLRQDMDAGE 253

Query: 107 PIRLEKLVDRG 117
            +    L    
Sbjct: 254 HMLSRMLEKPP 264


>gi|331006029|ref|ZP_08329371.1| Flagellar basal-body P-ring formation protein flgA [gamma
           proteobacterium IMCC1989]
 gi|330420158|gb|EGG94482.1| Flagellar basal-body P-ring formation protein flgA [gamma
           proteobacterium IMCC1989]
          Length = 241

 Score = 42.4 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
             +VL+   +L  G +VT   + +       + +G+I D         + G  ++ P+ +
Sbjct: 115 KKSVLVINKNLPKGHIVTDTDINYSTKNIRTLRNGYISDKSF------VLGSQLKRPVRE 168

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           G PI   +L           +    +  ++ +  S       +  + +DV  +RS   R 
Sbjct: 169 GQPIYSHQLEPIELIKKGDKVNISAKVGSLTVVTSGTALDNGRKGEQIDVKNLRSS--RI 226

Query: 165 PTVTVV-LSNIRVI 177
               ++  S++ VI
Sbjct: 227 IRTKIIGASSVEVI 240


>gi|103487065|ref|YP_616626.1| N-acylneuraminate-9-phosphate synthase [Sphingopyxis alaskensis
           RB2256]
 gi|98977142|gb|ABF53293.1| N-acetylneuraminate synthase [Sphingopyxis alaskensis RB2256]
          Length = 749

 Score = 42.4 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 13/88 (14%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++   +  G  +    ++  + P + +   F           EL G + +  +++GD  
Sbjct: 406 LVAARPIRAGQQIADEDIQIRS-PGQGLQPYF---------RAELVGRIAKRDMIEGDFF 455

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDI 136
               L D              R   + +
Sbjct: 456 FQSDLADAVASARDYRFD---RPFGVPV 480


>gi|289675699|ref|ZP_06496589.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. syringae
           FF5]
          Length = 112

 Score = 42.4 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 24/65 (36%)

Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239
           D  +  +++ +   T T+ +       L+ A     L L +RS  + N      ++    
Sbjct: 1   DERLKQEQQRINARTVTVAVPQALVARLMLASQTGVLRLAVRSADEGNLQDYWANEAGGP 60

Query: 240 QEEGK 244
           +   +
Sbjct: 61  EAAER 65


>gi|305681758|ref|ZP_07404562.1| SAF domain protein [Corynebacterium matruchotii ATCC 14266]
 gi|305658231|gb|EFM47734.1| SAF domain protein [Corynebacterium matruchotii ATCC 14266]
          Length = 216

 Score = 42.4 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 15/153 (9%), Positives = 48/153 (31%), Gaps = 4/153 (2%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           + I+V++   ++A G  +T   +  V   E  +    +           +        + 
Sbjct: 39  QHISVVVYSRNVAAGSRITATDVTVVHVSESVLPQDRLATTDAAVGNIVVASRSRGAMVS 98

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
             D +    +        S+          + ++  + +  +++P D + ++   + ++ 
Sbjct: 99  AADFVDSALVSQTMTNTTSNDAGVKTHMVPITLADPT-LASLLRPGDTITII---TAADD 154

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT 196
                V+ +  +VI              G+   
Sbjct: 155 NSAPRVIAAGGKVIFATTKATDFPGATPGTVLV 187


>gi|120603674|ref|YP_968074.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio vulgaris DP4]
 gi|120563903|gb|ABM29647.1| N-acetylneuraminate synthase [Desulfovibrio vulgaris DP4]
          Length = 352

 Score = 42.4 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 10/91 (10%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
              +V P ++ +              L++   +  G V+ P  L W   P   +      
Sbjct: 271 VTGMVGPCNITSLPSEEPARRNARRSLVAARAIPAGKVLEPADLTWKR-PAHGISPRCY- 328

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
                    E+ G+  R  I +   ++   L
Sbjct: 329 --------DEVVGMKARADIAEDTVLKWGHL 351


>gi|46578765|ref|YP_009573.1| NeuB family protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448177|gb|AAS94832.1| NeuB family protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232632|gb|ADP85486.1| N-acetylneuraminate synthase [Desulfovibrio vulgaris RCH1]
          Length = 352

 Score = 42.4 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 10/91 (10%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
              +V P ++ +              L++   +  G V+ P  L W   P   +      
Sbjct: 271 VTGMVGPCNITSLPSEEPARRNARRSLVAARAIPAGKVLEPADLTWKR-PAHGISPRCY- 328

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
                    E+ G+  R  I +   ++   L
Sbjct: 329 --------DEVVGMKARADIAEDTVLKWGHL 351


>gi|238764388|ref|ZP_04625338.1| Flagella basal body P-ring formation protein flgA [Yersinia
           kristensenii ATCC 33638]
 gi|238697414|gb|EEP90181.1| Flagella basal body P-ring formation protein flgA [Yersinia
           kristensenii ATCC 33638]
          Length = 233

 Score = 42.4 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 6/67 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
              ++   L  G  +TP  +E      + +  G + +           G +    I  G 
Sbjct: 110 QYAVAARQLTAGAKITPQDIEMKQGRLDTLPPGALLEPSFAQ------GAVSLRQINAGQ 163

Query: 107 PIRLEKL 113
           P+    L
Sbjct: 164 PLTRNML 170


>gi|261344146|ref|ZP_05971790.1| flagella basal body P-ring formation protein FlgA [Providencia
           rustigianii DSM 4541]
 gi|282567739|gb|EFB73274.1| flagella basal body P-ring formation protein FlgA [Providencia
           rustigianii DSM 4541]
          Length = 222

 Score = 42.4 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 34/159 (21%), Gaps = 39/159 (24%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
                ++  ++  G  +    +         +  G   +         L G +    I  
Sbjct: 96  TGQYYVATRNINRGETIEFVDIGTKKGLIHQLPSGAATEKI------ALRGTIALRNITA 149

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-----S 159
           G  +    +                                IK    V V          
Sbjct: 150 GQTLTNSMVRRPWA---------------------------IKSGQTVHVFATGNNFSVK 182

Query: 160 LSERKPTVTVVLSNIRVIAI-DHNIDSDERVLVGSTATL 197
              R     V+  NIRV  I    ++ + +        L
Sbjct: 183 YEGRAINNAVIGENIRVRLINGQVVNGEAQENGSVQVAL 221


>gi|108809059|ref|YP_652975.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Antiqua]
 gi|108810744|ref|YP_646511.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Nepal516]
 gi|167398491|ref|ZP_02304015.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|21960413|gb|AAM87006.1|AE013948_14 putative flagellar protein [Yersinia pestis KIM 10]
 gi|45437658|gb|AAS63208.1| putative flagellar protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774392|gb|ABG16911.1| flagella basal body P-ring formation protein [Yersinia pestis
           Nepal516]
 gi|108780972|gb|ABG15030.1| putative flagella basal body P-ring formation protein [Yersinia
           pestis Antiqua]
 gi|167050995|gb|EDR62403.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
          Length = 305

 Score = 42.0 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 19/147 (12%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E V T  P  ++ + ++K  L  G  V  + +E        V  G+I D        E+ 
Sbjct: 165 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDPD------EIL 218

Query: 95  GVLVRVPILKGDPIRLEKLVDR-----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
           G+ ++  I +   +   +L            L      G  A  + I+  +   G +   
Sbjct: 219 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKGEL--- 275

Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRV 176
                + V++LS  +     V  + RV
Sbjct: 276 -----IKVKNLSSGRVVTATVDGSGRV 297


>gi|54293884|ref|YP_126299.1| flagellar basal body P-ring biosynthesis protein FlgA [Legionella
           pneumophila str. Lens]
 gi|53753716|emb|CAH15174.1| hypothetical protein lpl0940 [Legionella pneumophila str. Lens]
          Length = 233

 Score = 42.0 bits (97), Expect = 0.075,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 22/115 (19%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           VL++K  L  G  ++ + +       + +  G+  D       +EL G++ +  I    P
Sbjct: 110 VLVAKRALLKGTKISNSDIYQTELDVQKLKQGYFTDS------KELIGLVCKHDITPNSP 163

Query: 108 IRLEKLVDRGNGGLSSLLPKGKRA--------ATMDISISSAVGGMIKPNDHVDV 154
           +      +  N  L+ L+ KG++          T+ +   +   G +   D V V
Sbjct: 164 L------NPFNIELAKLVHKGEQVSIIAAHDNLTVSMDGVAMDEGAL--GDSVKV 210


>gi|145597813|ref|YP_001161889.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Pestoides F]
 gi|145209509|gb|ABP38916.1| flagella basal body P-ring formation protein [Yersinia pestis
           Pestoides F]
          Length = 305

 Score = 42.0 bits (97), Expect = 0.076,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 19/147 (12%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E V T  P  ++ + ++K  L  G  V  + +E        V  G+I D        E+ 
Sbjct: 165 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDPD------EIL 218

Query: 95  GVLVRVPILKGDPIRLEKLVDR-----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
           G+ ++  I +   +   +L            L      G  A  + I+  +   G +   
Sbjct: 219 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKGEL--- 275

Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRV 176
                + V++LS  +     V  + RV
Sbjct: 276 -----IKVKNLSSGRVVTATVDGSGRV 297


>gi|158313204|ref|YP_001505712.1| SAF domain-containing protein [Frankia sp. EAN1pec]
 gi|158108609|gb|ABW10806.1| SAF domain protein [Frankia sp. EAN1pec]
          Length = 221

 Score = 42.0 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 13/178 (7%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79
           G+    L+      T      +     + ++    L  G ++    L        +V   
Sbjct: 29  GMAVAALLVVMGAGTGAWAVTSSGDKADAVVLTRPLNRGELIETGDLAIARV---SVEGT 85

Query: 80  FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139
            +       A + L G    + +  G  +  E          S+L P G     + ++  
Sbjct: 86  GVRLASPQAARESLVGRQALLDLPAGTLVTPEM-------AGSALPPAGLARVGLRLAPE 138

Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATL 197
           +     I+P D V VV            T++   ++V A++            +   L
Sbjct: 139 ALPSAQIQPGDWVQVV---YPDGVSGEPTLIGDAVQVAAVEPAETDGTGGDGDTVVYL 193


>gi|209967011|ref|YP_002299926.1| N-acetylneuraminic acid synthase [Rhodospirillum centenum SW]
 gi|209960477|gb|ACJ01114.1| N-acetylneuraminic acid synthase [Rhodospirillum centenum SW]
          Length = 365

 Score = 42.0 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 10/104 (9%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
           A   +     +      +   K    +++  DL  G V+    L + A P + +      
Sbjct: 272 ARIALGDGVKRRYPSEEKPLYKMAKKIVAARDLPAGHVLAQEDLAFKA-PNDGLPPY--- 327

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
                     L G+ +  P+ + + I    L         +++P
Sbjct: 328 ------HADHLVGMRLTRPLAEDEAIGYADLTSEDAPASPAVVP 365


>gi|289424445|ref|ZP_06426228.1| SAF domain protein [Propionibacterium acnes SK187]
 gi|289155142|gb|EFD03824.1| SAF domain protein [Propionibacterium acnes SK187]
          Length = 205

 Score = 42.0 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   +  G V+  + L  V      +             + +++G    + I +G 
Sbjct: 37  EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 89

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +    ++        S +  GK    + ++ SS V GM++    V VV           
Sbjct: 90  ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDGTPHVL 142

Query: 167 VT 168
             
Sbjct: 143 TR 144


>gi|220932493|ref|YP_002509401.1| Flagellar basal body P-ring biosynthesis protein [Halothermothrix
           orenii H 168]
 gi|219993803|gb|ACL70406.1| Flagellar basal body P-ring biosynthesis protein [Halothermothrix
           orenii H 168]
          Length = 336

 Score = 42.0 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 7/132 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL++  ++  G  +    L         V    I+D + P     L   +V++P+ KG+
Sbjct: 210 KVLVATRNIKRGSNICKEDLALTTEKITGVRGEIINDFNDP----RLSYSIVKIPLQKGE 265

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +  + L          ++        + +S S    G  +  D+V V+     +  +  
Sbjct: 266 ILTTDHLEQPVVIHWGDIVEAEVIVRNVKVSTSVKALGSGRVGDYVKVI--NPETGYEFK 323

Query: 167 VTVVLSN-IRVI 177
             V+ S  +RV+
Sbjct: 324 ARVINSRLVRVV 335


>gi|317486066|ref|ZP_07944919.1| NeuB family protein [Bilophila wadsworthia 3_1_6]
 gi|316922693|gb|EFV43926.1| NeuB family protein [Bilophila wadsworthia 3_1_6]
          Length = 352

 Score = 42.0 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
           + ++    ++               L++  ++  G ++  + L W          G I  
Sbjct: 272 LSMIGEMRIEALASEEPARQNARRSLVANRNIPAGKIIDKDDLTWKR------PAGGIS- 324

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
              P    E+ G+  R  I +   ++   L
Sbjct: 325 ---PRHYYEVLGMAARADIEEDTVLQWAHL 351


>gi|297570919|ref|YP_003696693.1| SAF domain protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931266|gb|ADH92074.1| SAF domain protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 53/173 (30%), Gaps = 34/173 (19%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R   +++  V  +  G     L+S                 + V  +  D+A G  +
Sbjct: 9   RKARDPRLLLGMVLVIGGGTAGALLMS-------------EPDSVLVPQATTDVAAGDTL 55

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
             N    V  P +             + +    G + +  +  G+ +    +  +  G  
Sbjct: 56  DKNNFTLVQMPRDIAHSYV-------HGLDFAPGSITQRSLSAGEFLPENAVGKKNVGI- 107

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174
                    A  + +  SSA    +KP   ++V  V    ++     ++  + 
Sbjct: 108 -------DIAVPVAVPQSSA----LKPGTTINVWRVPR--DKDAHSEIIARDA 147


>gi|312199830|ref|YP_004019891.1| SAF domain protein [Frankia sp. EuI1c]
 gi|311231166|gb|ADP84021.1| SAF domain protein [Frankia sp. EuI1c]
          Length = 287

 Score = 41.6 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 69/243 (28%), Gaps = 57/243 (23%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68
           ++   +  LV+ ++  RL +     +              + +K DL  G VV+   L  
Sbjct: 47  LIFGILIVLVSVVLGARLFATADRTSAW------------VAAKADLPAGHVVSAGDLVT 94

Query: 69  VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128
           V      + D      +    ++E+ G  +  P+  GD I                    
Sbjct: 95  VR---AQLSDATAGRYYPGRRLKEVVGGTLARPVGAGDLISGSDFAGPDTAA-------- 143

Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI---------RVIAI 179
            R   + +   +     + P DHVDV + ++            +           +  A 
Sbjct: 144 TRLVPIVV--QAGRLPDLAPGDHVDVYVFQASGAVGAGDASSGTGGSGGTGNATGQSTAT 201

Query: 180 DHNIDSDERVLVG-----------------------STATLELTPMQAKALVAAQSVAKL 216
             +       + G                        + TL +    A   VAA    ++
Sbjct: 202 GQSTGVGTPAVGGAGAEVLVLHDVEFLGQQRIASGDRSLTLRVPVDAAIRAVAASQSGRV 261

Query: 217 SLV 219
            +V
Sbjct: 262 DVV 264


>gi|309812059|ref|ZP_07705820.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
 gi|308433991|gb|EFP57862.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
          Length = 226

 Score = 41.6 bits (96), Expect = 0.099,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 67/224 (29%), Gaps = 37/224 (16%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK  R +  +V     ++  +  +                     + V  +K  L  G  
Sbjct: 27  MKDVRWVVGIVLLALGVLGTLRVIGSFDDS---------------VQVWSAKSALVPGQR 71

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +T + L       ++    ++    QP       G +V+  +  G+ +    + D     
Sbjct: 72  LTSSDLVPTRVRLDDRGGQYLSSATQP-------GGVVQRAVGAGELVPKNAVGD----- 119

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV----TVVLSNIRV 176
                  G     + +++      +I+    V+V +         T        +    V
Sbjct: 120 -----ASGVTVRALSVNVERGQADVIRAGGDVEVWVSDKKEGAGSTGFDKPHQSVERALV 174

Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLV 219
             +         V  GS   + +      A++ A +   +++LV
Sbjct: 175 SHVGSRSGGVVAVADGSPVEILVPRESLPAMIDAVNSGARITLV 218


>gi|328953564|ref|YP_004370898.1| N-acetylneuraminate synthase [Desulfobacca acetoxidans DSM 11109]
 gi|328453888|gb|AEB09717.1| N-acetylneuraminate synthase [Desulfobacca acetoxidans DSM 11109]
          Length = 347

 Score = 41.6 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 10/65 (15%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++  D+  G  +TP +LE    PE  V   ++             G + + P+   + I
Sbjct: 293 LVANQDIPQGTKLTPEMLEGKR-PEPGVSPEYL---------DFFVGRVTKRPLKYNEAI 342

Query: 109 RLEKL 113
             + +
Sbjct: 343 SWDDI 347


>gi|114321516|ref|YP_743199.1| N-acetylneuraminate synthase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227910|gb|ABI57709.1| N-acetylneuraminate synthase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 348

 Score = 41.6 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 10/91 (10%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83
              +S    +          +    +++  DL  G  +    L +   P   V       
Sbjct: 268 AWAMSRPAAEITAAEESARTQARRSVVAATDLPAGTTLAAGHLAYKR-PGTGVP------ 320

Query: 84  VHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114
              P   ++L G  + V +   + I  +KL 
Sbjct: 321 ---PTQAEDLIGRRLAVDLAHDELITPDKLA 348


>gi|303325648|ref|ZP_07356091.1| NeuB family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863564|gb|EFL86495.1| NeuB family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 353

 Score = 41.6 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 10/87 (11%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           V    V+               L++   +  G  +TP  L W   P   +          
Sbjct: 274 VGDLDVRALPAEEPARQHARRSLVTTRAVPAGQALTPADLTWKR-PAHGIS--------- 323

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKL 113
           P    E+ G+  R  + +   +    L
Sbjct: 324 PRNYDEVLGLRARRDLPEDTVLTWADL 350


>gi|111220768|ref|YP_711562.1| hypothetical protein FRAAL1311 [Frankia alni ACN14a]
 gi|111148300|emb|CAJ59972.1| hypothetical protein; putative signal peptide [Frankia alni ACN14a]
          Length = 260

 Score = 41.6 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 13/128 (10%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
            +       +++KG L  G V+    L  V+   +    G     +    +++L G  + 
Sbjct: 53  ASADATRQWVVAKGSLPAGHVIVAGDLTTVSARLDARTSG---RYYPGGRLRDLTGATLA 109

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
            P+  G+ +       R             R   + +         ++P DHVDV +  +
Sbjct: 110 RPVDAGELVSGADFAGRNTQS--------TRLVPVIVKA--GRLPALEPGDHVDVYVFSA 159

Query: 160 LSERKPTV 167
            S      
Sbjct: 160 GSAAATGS 167


>gi|332674895|gb|AEE71711.1| hypothetical protein PAZ_c05150 [Propionibacterium acnes 266]
          Length = 194

 Score = 41.6 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 14/129 (10%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
              +    V+++   +  G V+  + L  V      +             + +++G    
Sbjct: 30  AASSSGREVIVAAHAIEGGRVIQRSDLHTVRIDHGVLPHETAT-------LAQVEGRQAS 82

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           + I +G  +    ++        S +  GK    + ++ SS V GM++    V VV    
Sbjct: 83  IRITEGTILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSE 135

Query: 160 LSERKPTVT 168
                    
Sbjct: 136 DGTPHVLTR 144


>gi|195952533|ref|YP_002120823.1| flagella basal body P-ring formation protein FlgA [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195932145|gb|ACG56845.1| flagella basal body P-ring formation protein FlgA [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 235

 Score = 41.6 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
           + V+++K  +  G ++T + ++        V    +       + +++ G      I  G
Sbjct: 106 VPVIVAKKLITRGQIITKDDIKSAVKYIRFVPQNLV------VSKRQVIGATALQNIGIG 159

Query: 106 DPIRLEKLVDRG 117
           +PIR   +    
Sbjct: 160 EPIRTSMISMVP 171


>gi|148360444|ref|YP_001251651.1| flagella basal body P-ring formation protein FlgA [Legionella
           pneumophila str. Corby]
 gi|296106491|ref|YP_003618191.1| flagella basal body P-ring formation protein FlgA [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148282217|gb|ABQ56305.1| flagella basal body P-ring formation protein FlgA [Legionella
           pneumophila str. Corby]
 gi|295648392|gb|ADG24239.1| flagella basal body P-ring formation protein FlgA [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307609702|emb|CBW99212.1| hypothetical protein LPW_09931 [Legionella pneumophila 130b]
          Length = 233

 Score = 41.6 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 22/115 (19%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           VL++K  L  G  ++ + +       + +  G+  D       +EL G++ +  I    P
Sbjct: 110 VLVAKRALLKGTKISNSDIYQTELDVQKLKQGYFTDS------KELIGLVCKHDITPNSP 163

Query: 108 IRLEKLVDRGNGGLSSLLPKGKRA--------ATMDISISSAVGGMIKPNDHVDV 154
           +      +  N  L+ L+ KG++          T+ +   +   G +   D V V
Sbjct: 164 L------NPFNIELAKLVHKGEQVSIIAAHDNLTVSMDGIAMDEGAL--GDSVKV 210


>gi|52841143|ref|YP_094942.1| flagellar basal body P-ring biosynthesis protein FlgA [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54296929|ref|YP_123298.1| flagellar basal body P-ring biosynthesis protein FlgA [Legionella
           pneumophila str. Paris]
 gi|52628254|gb|AAU26995.1| flagella basal body P-ring formation protein FlgA [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|53750714|emb|CAH12121.1| hypothetical protein lpp0970 [Legionella pneumophila str. Paris]
          Length = 233

 Score = 41.6 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 22/115 (19%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           VL++K  L  G  ++ + +       + +  G+  D       +EL G++ +  I    P
Sbjct: 110 VLVAKRALLKGTKISNSDIYQTELDVQKLKQGYFTDS------KELIGLVCKHDITPNSP 163

Query: 108 IRLEKLVDRGNGGLSSLLPKGKRA--------ATMDISISSAVGGMIKPNDHVDV 154
           +      +  N  L+ L+ KG++          T+ +   +   G +   D V V
Sbjct: 164 L------NPFNIELAKLVHKGEQVSIIAAHDNLTVSMDGIAMDEGAL--GDSVKV 210


>gi|311105931|ref|YP_003978784.1| flagella basal body P-ring formation protein FlgA [Achromobacter
           xylosoxidans A8]
 gi|310760620|gb|ADP16069.1| flagella basal body P-ring formation protein FlgA [Achromobacter
           xylosoxidans A8]
          Length = 237

 Score = 41.6 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 6/106 (5%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
            ++   +A G  +TP+ L         +  G I D       Q + G+     I  G  +
Sbjct: 116 YVAARLIAAGQALTPDDLAPRDGDLIALPPGAITDP------QAVAGMTAVHRINAGQAV 169

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           R   L +  +    + +    R     +S          P   V V
Sbjct: 170 RSSGLRNAQSVLRGANVRINARGKGFVVSSEGQALDNAAPGATVQV 215


>gi|238788311|ref|ZP_04632105.1| Flagella basal body P-ring formation protein flgA [Yersinia
           frederiksenii ATCC 33641]
 gi|238723557|gb|EEQ15203.1| Flagella basal body P-ring formation protein flgA [Yersinia
           frederiksenii ATCC 33641]
          Length = 226

 Score = 41.6 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   L  G  +TP  +E      + +  G + + H         G +    I  G P+ 
Sbjct: 106 VAARRLPSGAKITPEDIEMKQGRLDTLPPGALLEPHFAQ------GAVSLRQINAGQPLT 159

Query: 110 LEKL 113
              L
Sbjct: 160 RNML 163


>gi|94264703|ref|ZP_01288484.1| N-acylneuraminate-9-phosphate synthase [delta proteobacterium
           MLMS-1]
 gi|93454869|gb|EAT05116.1| N-acylneuraminate-9-phosphate synthase [delta proteobacterium
           MLMS-1]
          Length = 749

 Score = 41.3 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 15/107 (14%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L+   DL  G ++  +++E  + P + +         QPN ++EL G +       GD  
Sbjct: 406 LVINQDLTQGEMIQRDMIEVKS-PGQGL---------QPNRLEELVGKVAVRDFRAGDFF 455

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
               +  +             R   + +         +     +D V
Sbjct: 456 FESDIKPKAQRKSHYTFN---RPYGIPVRYHDY--KKLSAGIQIDFV 497


>gi|289428376|ref|ZP_06430062.1| SAF domain protein [Propionibacterium acnes J165]
 gi|289158348|gb|EFD06565.1| SAF domain protein [Propionibacterium acnes J165]
          Length = 194

 Score = 41.3 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 14/133 (10%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
                  +    V+++   +  G V+  + L  V      +             + +++G
Sbjct: 26  SPGMAASSSGREVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEG 78

Query: 96  VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
               + I +G  +    ++        S +  GK    + ++ SS V GM++    V VV
Sbjct: 79  RQASIRITEGTILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVV 131

Query: 156 MVRSLSERKPTVT 168
                        
Sbjct: 132 SPSEDGTPHVLTR 144


>gi|228911107|ref|ZP_04074913.1| NeuB family member [Bacillus thuringiensis IBL 200]
 gi|229072734|ref|ZP_04205934.1| NeuB family member [Bacillus cereus F65185]
 gi|228710360|gb|EEL62334.1| NeuB family member [Bacillus cereus F65185]
 gi|228848470|gb|EEM93318.1| NeuB family member [Bacillus thuringiensis IBL 200]
          Length = 350

 Score = 41.3 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85
           ++     +  E   +        L++ GD+  G V+T  +L W   P   +   ++    
Sbjct: 273 VLGEKTKKPTEAEKQAIKYARRSLVATGDIEEGTVITREMLTWKR-PGTGISPKYL---- 327

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKL 113
                + + G+ V   I + D I  E L
Sbjct: 328 -----ETIIGLKVTKNIKEDDVITWEML 350


>gi|238785501|ref|ZP_04629484.1| Flagella basal body P-ring formation protein flgA [Yersinia
           bercovieri ATCC 43970]
 gi|238713603|gb|EEQ05632.1| Flagella basal body P-ring formation protein flgA [Yersinia
           bercovieri ATCC 43970]
          Length = 234

 Score = 41.3 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
             +++   LA G  +T   +E      + +  G + + H         G +    I  G 
Sbjct: 111 RYVVATRQLAAGAKITAQDVEMKQGRLDTLPPGALLEPHFAQ------GAVSLRQINAGQ 164

Query: 107 PIRLEKL 113
           P+    L
Sbjct: 165 PLTRNML 171


>gi|154486709|ref|ZP_02028116.1| hypothetical protein BIFADO_00530 [Bifidobacterium adolescentis
           L2-32]
 gi|154084572|gb|EDN83617.1| hypothetical protein BIFADO_00530 [Bifidobacterium adolescentis
           L2-32]
          Length = 206

 Score = 41.3 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 47/137 (34%), Gaps = 15/137 (10%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                    ++++  ++A G  +T   +E    P +               + +  G++ 
Sbjct: 14  VRAAIATQPIVVAVRNVAKGTAITREAVELREAPSDGSLSNAFHT------LDDAVGLIA 67

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
           +V I   D +             S ++P+G  +  + ++   +V   + P D V +    
Sbjct: 68  QVGIGAHDVLMSGM------ARASPVVPQGHTSIEVRLA---SVADGLIPGDKVTLSSAT 118

Query: 159 SLSERKPTVTVVLSNIR 175
                  + T  ++++ 
Sbjct: 119 MTDAEMQSGTPNVADMP 135


>gi|209364155|ref|YP_001425048.2| hypothetical protein CBUD_1715 [Coxiella burnetii Dugway 5J108-111]
 gi|207082088|gb|ABS78088.2| hypothetical exported protein [Coxiella burnetii Dugway 5J108-111]
          Length = 394

 Score = 41.3 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 80/240 (33%), Gaps = 42/240 (17%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R   ++     A+VA I+ +       +        + A  +++L+S  ++     
Sbjct: 31  MKKSR-FLLIFLVALAIVAMILGLWRPLERRLHPTSNPKSSEAPQVSILVSGLEVP---- 85

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
                     +    + D       +   + E  G ++ + +  G P+     V      
Sbjct: 86  ----------WALSFLPD-------RDLLVTERKGRVLLIDLQSGKPVIK---VIAKINE 125

Query: 121 LSSLLPKGKRAATMDISISSAVGGMI-----KPNDHVDVVMVRS-LSERKPTVTVVLSNI 174
           ++S+   G     +           +     +   +V+ V+    ++ +     ++L NI
Sbjct: 126 VASVAESGLSGIAVHPHFQQNHWIYLYYTYRRNGRYVNKVVRYELMNNQLTNPKIILDNI 185

Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS----VAKLSLVLRSIADLNPSS 230
               +        R+  G    L +T   A+   AAQ+      K+   LR   D +  +
Sbjct: 186 ----LAARTHDGGRIKFGPDGYLYITTGDAQVAKAAQNPKSLAGKI---LRIKDDGSIPA 238


>gi|27381082|ref|NP_772611.1| polysaccharide biosynthesis related protein [Bradyrhizobium
           japonicum USDA 110]
 gi|27354248|dbj|BAC51236.1| blr5971 [Bradyrhizobium japonicum USDA 110]
          Length = 641

 Score = 40.9 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++  D+  G V++ + +   + P + +          P  M  L G +++  +   D  
Sbjct: 299 LVAARDIEAGTVISDDDIAVKS-PGQGLS---------PLKMPALIGKILKRKMAADDYF 348

Query: 109 RLEKL 113
               L
Sbjct: 349 FQSDL 353


>gi|153207242|ref|ZP_01946006.1| glucose/sorbosone dehydrogenase [Coxiella burnetii 'MSU Goat Q177']
 gi|120576730|gb|EAX33354.1| glucose/sorbosone dehydrogenase [Coxiella burnetii 'MSU Goat Q177']
          Length = 369

 Score = 40.9 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 42/240 (17%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R   ++     A+VA I+ +       +        + A  +++L+S  ++     
Sbjct: 6   MKKSR-FLLIFLVALAIVAMILGLWRPLERRLHPTSNPKSSEAPQVSILVSGLEVP---- 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
                     +    + D       +   + E  G ++ + +  G P+     V      
Sbjct: 61  ----------WALSFLPD-------RDLLVTERKGRVLLIDLQSGKPVIK---VVAKINE 100

Query: 121 LSSLLPKGKRAATMDISISSAVGGMI-----KPNDHVDVVMVRS-LSERKPTVTVVLSNI 174
           ++S+   G     +           +     +   +V+ V+    ++ +     ++L NI
Sbjct: 101 VASVAESGLSGIAVHPHFQQNHWIYLYYTYRRNGRYVNKVVRYELMNNQLTNPKIILDNI 160

Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS----VAKLSLVLRSIADLNPSS 230
                                 L +T   A+   AAQ+      K+   LR   D +  +
Sbjct: 161 LAARTHDGGRIKFGPDGY----LYITTGDAQVAKAAQNPKSLAGKI---LRIKDDGSIPA 213


>gi|295130055|ref|YP_003580718.1| SAF domain protein [Propionibacterium acnes SK137]
 gi|291376350|gb|ADE00205.1| SAF domain protein [Propionibacterium acnes SK137]
          Length = 194

 Score = 40.9 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   +  G V+  + L  V      +             + +++G    + I +G 
Sbjct: 37  EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 89

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +    ++        S +  GK    + ++ SS V GM++    V VV           
Sbjct: 90  ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDGTPHVL 142

Query: 167 VT 168
             
Sbjct: 143 TR 144


>gi|212218192|ref|YP_002304979.1| hypothetical protein CbuK_0559 [Coxiella burnetii CbuK_Q154]
 gi|212012454|gb|ACJ19834.1| hypothetical exported protein [Coxiella burnetii CbuK_Q154]
          Length = 394

 Score = 40.9 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 42/240 (17%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R   ++     A+VA I+ +       +        + A  +++L+S  ++     
Sbjct: 31  MKKSR-FLLIFLVALAIVAMILGLWRPLERRLHPTSNPKSSEAPQVSILVSGLEVP---- 85

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
                     +    + D       +   + E  G ++ + +  G P+     V      
Sbjct: 86  ----------WALSFLPD-------RDLLVTERKGRVLLIDLQSGKPVIK---VVAKINE 125

Query: 121 LSSLLPKGKRAATMDISISSAVGGMI-----KPNDHVDVVMVRS-LSERKPTVTVVLSNI 174
           ++S+   G     +           +     +   +V+ V+    ++ +     ++L NI
Sbjct: 126 VASVAESGLSGIAVHPHFQQNHWIYLYYTYRRNGRYVNKVVRYELMNNQLTNPKIILDNI 185

Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS----VAKLSLVLRSIADLNPSS 230
                                 L +T   A+   AAQ+      K+   LR   D +  +
Sbjct: 186 LAARTHDGGRIKFGPDGY----LYITTGDAQVAKAAQNPKSLAGKI---LRIKDDGSIPA 238


>gi|114330357|ref|YP_746579.1| flagellar basal body P-ring biosynthesis protein FlgA [Nitrosomonas
           eutropha C91]
 gi|114307371|gb|ABI58614.1| putative flagella basal body P-ring formation protein [Nitrosomonas
           eutropha C91]
          Length = 231

 Score = 40.9 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
           NV+ +   + +G +V    +         +  G + D        ++ G +    +  G 
Sbjct: 108 NVIHAAQPINMGKLVDTQDIVSKEVDLVRIPAGAVTDPD------QVVGKVAVTFLASGQ 161

Query: 107 PIRLEKLVDRG 117
           PIR  +L    
Sbjct: 162 PIRTHQLRAPY 172


>gi|150260253|ref|ZP_01916981.1| lateral flagellar P-ring addition protein [Yersinia pestis
           CA88-4125]
 gi|162419782|ref|YP_001604851.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Angola]
 gi|165925092|ref|ZP_02220924.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165939099|ref|ZP_02227651.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166008979|ref|ZP_02229877.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166211927|ref|ZP_02237962.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167418801|ref|ZP_02310554.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425137|ref|ZP_02316890.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167466345|ref|ZP_02331049.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis FV-1]
 gi|229837404|ref|ZP_04457567.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           Pestoides A]
 gi|229840617|ref|ZP_04460776.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842832|ref|ZP_04462984.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229900941|ref|ZP_04516065.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           Nepal516]
 gi|294502784|ref|YP_003566846.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Z176003]
 gi|149289661|gb|EDM39738.1| lateral flagellar P-ring addition protein [Yersinia pestis
           CA88-4125]
 gi|162352597|gb|ABX86545.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Angola]
 gi|165913055|gb|EDR31680.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165923292|gb|EDR40443.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165992318|gb|EDR44619.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206673|gb|EDR51153.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962795|gb|EDR58816.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167055900|gb|EDR65681.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229682280|gb|EEO78372.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           Nepal516]
 gi|229690099|gb|EEO82156.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696983|gb|EEO87030.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705527|gb|EEO91537.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis
           Pestoides A]
 gi|262360816|gb|ACY57537.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           D106004]
 gi|262364761|gb|ACY61318.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           D182038]
 gi|294353243|gb|ADE63584.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Z176003]
 gi|320016715|gb|ADW00287.1| Flagellar basal-body P-ring formation proteinflgA [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 282

 Score = 40.9 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 19/147 (12%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E V T  P  ++ + ++K  L  G  V  + +E        V  G+I D        E+ 
Sbjct: 142 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDPD------EIL 195

Query: 95  GVLVRVPILKGDPIRLEKLVDR-----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
           G+ ++  I +   +   +L            L      G  A  + I+  +   G +   
Sbjct: 196 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKGEL--- 252

Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRV 176
                + V++LS  +     V  + RV
Sbjct: 253 -----IKVKNLSSGRVVTATVDGSGRV 274


>gi|314980540|gb|EFT24634.1| SAF domain protein [Propionibacterium acnes HL072PA2]
 gi|315087573|gb|EFT59549.1| SAF domain protein [Propionibacterium acnes HL072PA1]
          Length = 166

 Score = 40.9 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 14/129 (10%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
              +    V+++   +  G V+  + L  V      +             + +++G    
Sbjct: 2   AASSSGREVIVAAHAIEGGRVIQRSDLHTVRIDPGILPHETAT-------LAQVEGRQAS 54

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           + I +G  +    ++        S +  GK    + ++ SS V GM++    V VV    
Sbjct: 55  IRITEGTILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSE 107

Query: 160 LSERKPTVT 168
                    
Sbjct: 108 DGTPHVLTR 116


>gi|313835437|gb|EFS73151.1| SAF domain protein [Propionibacterium acnes HL037PA2]
 gi|314928544|gb|EFS92375.1| SAF domain protein [Propionibacterium acnes HL044PA1]
 gi|314970476|gb|EFT14574.1| SAF domain protein [Propionibacterium acnes HL037PA3]
          Length = 191

 Score = 40.9 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   +  G V+  + L  +      +            A+ +++G    V I +G 
Sbjct: 34  EVVVAARAIEGGRVIQRSDLRTIRIDPGILPHEA-------AALAQVEGRQASVRITEGT 86

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +    ++     G       GK    + ++ SS V GM++    V VV           
Sbjct: 87  ILTTSAVLSGSATG------SGKALVGIHLADSSMV-GMLQVGQQVSVVSPSEDGTPHVL 139

Query: 167 VT 168
             
Sbjct: 140 TR 141


>gi|326803994|ref|YP_004321812.1| SAF domain protein [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651288|gb|AEA01471.1| SAF domain protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 354

 Score = 40.9 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79
           G+     V    V   E            ++   D+  G ++T ++L +   P   +  G
Sbjct: 269 GLEFQMKVRGQAVADLEAQAAARKNARRSIVLTQDVKAGTILTEDMLTFKR-PGTGIAPG 327

Query: 80  FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
                     ++E+ G  V   + +   +  + L
Sbjct: 328 ---------KVKEVIGRKVNQDLAEDTTLMEDML 352


>gi|292490649|ref|YP_003526088.1| flagella basal body P-ring formation protein FlgA [Nitrosococcus
           halophilus Nc4]
 gi|291579244|gb|ADE13701.1| flagella basal body P-ring formation protein FlgA [Nitrosococcus
           halophilus Nc4]
          Length = 221

 Score = 40.9 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   L  G  ++   +       E +  G++ D        ++ G  ++ P+  G 
Sbjct: 97  KVVVATHPLVPGSPLSLADIHLERRNLEQLRQGYLRDPA------QVAGKRLKRPLGLGA 150

Query: 107 PIRLEKLVDRG 117
            I  E L    
Sbjct: 151 VITPEVLEIPK 161


>gi|220934388|ref|YP_002513287.1| Flagellar basal body P-ring biosynthesis protein-like protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995698|gb|ACL72300.1| Flagellar basal body P-ring biosynthesis protein-like protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 262

 Score = 40.9 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 10/110 (9%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V++    L  GM +    L         +  G+++D      ++    +++R  +  G 
Sbjct: 138 EVVVLGHPLPRGMQLEAQHLRLERHDVGALPGGYLND------LELARDMVLRRALPAGT 191

Query: 107 PIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
            +  + +        G    L     A  + +   +   G     + V V
Sbjct: 192 VLTPQMVEPPRLVRRGQRVTLLAEGSAVNVRVEGEALADG--SRGERVQV 239


>gi|238762406|ref|ZP_04623377.1| tight adherance operon protein [Yersinia kristensenii ATCC 33638]
 gi|238699391|gb|EEP92137.1| tight adherance operon protein [Yersinia kristensenii ATCC 33638]
          Length = 277

 Score = 40.9 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 82/284 (28%), Gaps = 40/284 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M    ++ + +  V   + GI+               +       I +  S  DL  G +
Sbjct: 1   MNRKFILLLSLLIVVVGIIGILINIDNDEKKPYNSSELDSEKEVNIALAQSTHDLPSGTI 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +             +V +         +   +++  L++  +L G  +    L+   +  
Sbjct: 61  LRRQDYAIKKL---SVKESSELVESNISNSTDINSYLLKENVLSGSYLTKNMLISPNSDE 117

Query: 121 L-SSLLPKGKRAATMDISISS-AVGGMIKPNDHVDV----VMVRSLSERKPTVTV----- 169
               +L KG      ++      +   +   D +      +            T+     
Sbjct: 118 FNHLILKKGNVIYKFNLKKQDEYLLDSLNIGDWLSFQLRTLETDKRKGMDNGTTINKKGM 177

Query: 170 ------------VLSNIRVIAIDHNID------SDERVLVGSTAT--LEL--TPMQAKAL 207
                       ++  + ++ I    +      + +      T +  +E+         +
Sbjct: 178 NDRQRQSYSLSKLIQKMEIVRIKKYSESELSEINGKNQKTEETLSGYIEVIINMQDLDLI 237

Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251
             A++   + L   SI D    S     + D+  E + I+ ++ 
Sbjct: 238 YLAEASGDIILT-PSIDDEKHKS---KYLHDILPELRTIRELRG 277


>gi|238751758|ref|ZP_04613246.1| Flagella basal body P-ring formation protein flgA [Yersinia rohdei
           ATCC 43380]
 gi|238710029|gb|EEQ02259.1| Flagella basal body P-ring formation protein flgA [Yersinia rohdei
           ATCC 43380]
          Length = 224

 Score = 40.5 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  +TP  +       + +  G + + +         G +    I  G P+ 
Sbjct: 104 VAARQLASGAKITPQDIVMKQGRLDTLPPGALLEPNFAQ------GAVSLRQINAGQPLT 157

Query: 110 LEKL 113
              L
Sbjct: 158 RNML 161


>gi|238762363|ref|ZP_04623334.1| Flagella basal body P-ring formation protein FlgA [Yersinia
           kristensenii ATCC 33638]
 gi|238699348|gb|EEP92094.1| Flagella basal body P-ring formation protein FlgA [Yersinia
           kristensenii ATCC 33638]
          Length = 249

 Score = 40.5 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 64/153 (41%), Gaps = 17/153 (11%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E  +T  P  ++ V ++K  L  G +V P+ +E           G+I +        E+ 
Sbjct: 109 EVSVTVKPDIYLPVWVAKSTLERGKLVAPDDIELKKKNISTAQGGYITNPD------EIV 162

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS---ISSAVGGMIKPNDH 151
           G+ V+  I     +   +L          L+ +G++   +       +  +G  +K    
Sbjct: 163 GLTVKRRIRGLQVVTPSQLEQP------VLVTRGQQVLMIAEQEGIEARMLGEALKNGRK 216

Query: 152 VDVVMVRSLSERKPTVTVV--LSNIRVIAIDHN 182
            +++ V++LS ++    +V  ++ +R++ I  +
Sbjct: 217 GELIKVKNLSSKRTVTAIVDDIARVRMLGIASS 249


>gi|33864930|ref|NP_896489.1| putative N-acetylneuraminic acid synthetase [Synechococcus sp. WH
           8102]
 gi|33638614|emb|CAE06909.1| putative N-acetylneuraminic acid synthetase [Synechococcus sp. WH
           8102]
          Length = 754

 Score = 40.5 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 13/88 (14%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++  D+  G  +T  ++   + P + +         QPN + +L G  + V   +G+  
Sbjct: 409 LVAACDVPAGTEITEAMVRIQS-PGQGL---------QPNRLNDLIGRRLPVAKAQGEVF 458

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDI 136
               L               K+   + +
Sbjct: 459 FPSDLETPAATPRHYRF---KQPFGLPV 483


>gi|314969437|gb|EFT13535.1| SAF domain protein [Propionibacterium acnes HL037PA1]
          Length = 166

 Score = 40.5 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   +  G V+  + L  V      +             + +++G    + I +G 
Sbjct: 9   EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 61

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +    ++        S +  GK    + ++ SS V GM++    V VV           
Sbjct: 62  ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDGTPHVL 114

Query: 167 VT 168
             
Sbjct: 115 TR 116


>gi|304437404|ref|ZP_07397363.1| possible N-acylneuraminate-9-phosphate synthase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369660|gb|EFM23326.1| possible N-acylneuraminate-9-phosphate synthase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 350

 Score = 40.5 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/94 (10%), Positives = 29/94 (30%), Gaps = 10/94 (10%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +    +     +          K    ++   DL  G  +    L     P   +     
Sbjct: 263 MVQMGLGSEEREVFPEELAQRRKMRRSVVVVKDLPEGHTLCAEDLYAKR-PGTGIP---- 317

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
                P+ ++ L G  +R  + +   ++ + +++
Sbjct: 318 -----PDRIELLVGKTLRRAVKEDTLLQEDDILE 346


>gi|313806640|gb|EFS45147.1| SAF domain protein [Propionibacterium acnes HL087PA2]
 gi|313826714|gb|EFS64428.1| SAF domain protein [Propionibacterium acnes HL063PA1]
 gi|327333556|gb|EGE75276.1| SAF domain protein [Propionibacterium acnes HL096PA3]
 gi|327445418|gb|EGE92072.1| SAF domain protein [Propionibacterium acnes HL013PA2]
          Length = 166

 Score = 40.5 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 14/129 (10%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
              +    V+++   +  G V+  + L  V      +             + +++G    
Sbjct: 2   AASSSGREVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQAS 54

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           + I +G  +    ++        S +  GK    + ++ SS V GM++    V VV    
Sbjct: 55  IRITEGTILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSE 107

Query: 160 LSERKPTVT 168
                    
Sbjct: 108 DGTPHVLTR 116


>gi|170022967|ref|YP_001719472.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis YPIII]
 gi|186896775|ref|YP_001873887.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590923|emb|CAH22579.1| Putative flagella basal body P-ring formation protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|169749501|gb|ACA67019.1| flagella basal body P-ring formation protein FlgA [Yersinia
           pseudotuberculosis YPIII]
 gi|186699801|gb|ACC90430.1| flagella basal body P-ring formation protein FlgA [Yersinia
           pseudotuberculosis PB1/+]
          Length = 272

 Score = 40.5 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 11/117 (9%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E V T  P  ++ + ++K  L  G  V  + +E        V  G+I D        E+ 
Sbjct: 132 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDPD------EIL 185

Query: 95  GVLVRVPILKGDPIRLEKLVDR-----GNGGLSSLLPKGKRAATMDISISSAVGGMI 146
           G+ ++  I +   +   +L            L      G  A  + I+  +   G +
Sbjct: 186 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKGEL 242


>gi|327455631|gb|EGF02286.1| SAF domain protein [Propionibacterium acnes HL083PA2]
          Length = 166

 Score = 40.5 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   +  G V+  + L  V      +             + +++G    + I +G 
Sbjct: 9   EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 61

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +    ++        S +  GK    + ++ SS V GM++    V VV           
Sbjct: 62  ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDGTPHVL 114

Query: 167 VT 168
             
Sbjct: 115 TR 116


>gi|183601919|ref|ZP_02963288.1| hypothetical protein BIFLAC_06556 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241190409|ref|YP_002967803.1| hypothetical protein Balac_0354 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195815|ref|YP_002969370.1| hypothetical protein Balat_0354 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218804|gb|EDT89446.1| hypothetical protein BIFLAC_06556 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240248801|gb|ACS45741.1| hypothetical protein Balac_0354 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250369|gb|ACS47308.1| hypothetical protein Balat_0354 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793396|gb|ADG32931.1| hypothetical protein BalV_0343 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 185

 Score = 40.5 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 71/215 (33%), Gaps = 36/215 (16%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M + +S   AL   +  + L                      +++  DL  G+V+    +
Sbjct: 1   MLLALSVGVALFCTLQCVAL---------------ATATRQAVVAARDLDAGLVIATGDV 45

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
           E V  P+ +     +          +  G++ +  I KGD +    +      G    +P
Sbjct: 46  EMVEMPDHDALRHAL------GCPDDAVGLVTQTRIEKGDILLTTDV------GELPQVP 93

Query: 127 KGKRAATMDISISSAVGGMIKP-NDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDS 185
           +      + +     +G    P    V++   ++ ++             V +    +  
Sbjct: 94  EHHTVIDVRL----GLGQHSFPIGTVVELRSTQACADDARASP---EGCVVSSHAVVMAQ 146

Query: 186 DERVLVGSTAT-LELTPMQAKALVAAQSVAKLSLV 219
                 GST T + ++ ++A  ++AAQ    L   
Sbjct: 147 PRLDDTGSTVTQMAMSAVEALQVLAAQEHGTLIAA 181


>gi|313792921|gb|EFS40988.1| SAF domain protein [Propionibacterium acnes HL110PA1]
 gi|313802627|gb|EFS43849.1| SAF domain protein [Propionibacterium acnes HL110PA2]
 gi|313840265|gb|EFS77979.1| SAF domain protein [Propionibacterium acnes HL086PA1]
 gi|314964338|gb|EFT08438.1| SAF domain protein [Propionibacterium acnes HL082PA1]
 gi|315078648|gb|EFT50679.1| SAF domain protein [Propionibacterium acnes HL053PA2]
 gi|327456876|gb|EGF03531.1| SAF domain protein [Propionibacterium acnes HL092PA1]
          Length = 166

 Score = 40.5 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   +  G V+  + L  V      +             + +++G    + I +G 
Sbjct: 9   EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 61

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +    ++        S +  GK    + ++ SS V GM++    V VV           
Sbjct: 62  ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPNEDGTPHVL 114

Query: 167 VT 168
             
Sbjct: 115 TR 116


>gi|311067384|ref|YP_003972307.1| YhbJ protein [Bacillus atrophaeus 1942]
 gi|310867901|gb|ADP31376.1| YhbJ [Bacillus atrophaeus 1942]
          Length = 210

 Score = 40.5 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 53/169 (31%), Gaps = 27/169 (15%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53
           M   RL+    I +  V A++ G       S ++V+T+E         I   ++      
Sbjct: 1   MNRGRLILTNIIGLIVVLAIIGGGAYYYYQSTNYVKTDEAKVAGDMSAITAPVAGKVTDW 60

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           +L  G  V  + +              I      +    +DG +V+  +  G        
Sbjct: 61  NLTEGKEVKKDDVVAK-----------IKGEKSVDIKSIMDGTIVKNEVKNGQ------- 102

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             +    ++  +        +  +I       I+  + VD+V+      
Sbjct: 103 TVQAGTTIAQTIDMDH--LYITANIKETDIKDIEEGNKVDIVVDGDADT 149


>gi|171741303|ref|ZP_02917110.1| hypothetical protein BIFDEN_00382 [Bifidobacterium dentium ATCC
           27678]
 gi|283455337|ref|YP_003359901.1| hypothetical protein BDP_0400 [Bifidobacterium dentium Bd1]
 gi|171276917|gb|EDT44578.1| hypothetical protein BIFDEN_00382 [Bifidobacterium dentium ATCC
           27678]
 gi|283101971|gb|ADB09077.1| Hypothetical protein BDP_0400 [Bifidobacterium dentium Bd1]
          Length = 213

 Score = 40.5 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 64/210 (30%), Gaps = 41/210 (19%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINV-LISKGDLAVGMVVTPNILEWVAFPEEN 75
           +  G+  +R                    I   +++  D+                  + 
Sbjct: 40  VFLGLQCLRSTVETRPAVVTTQRIRRGDTITASVVAVRDIPY----------------DA 83

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD 135
            ++     +       ++ G++ ++ I  G  +             S ++P+G  A  + 
Sbjct: 84  AWNNAFHTID------DVTGMVAQIDIPDGGIVTATM------ARASPMIPQGHTAVDVR 131

Query: 136 ISISSAVGGMIKPNDHVD----VVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV 191
           ++ S      +   D V     V       +    +  + S   VI         +    
Sbjct: 132 LASSI---DELDVGDEVTLSGAVPAQGDAGDDGGALRELASRATVIG-----KPAKDANG 183

Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLR 221
            +TAT  ++P +A A++  Q  A +  V R
Sbjct: 184 MATATFAMSPDEAAAVLQVQEYAAIIAVTR 213


>gi|224370759|ref|YP_002604923.1| FlgA [Desulfobacterium autotrophicum HRM2]
 gi|223693476|gb|ACN16759.1| FlgA [Desulfobacterium autotrophicum HRM2]
          Length = 310

 Score = 40.5 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 16/113 (14%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+ +  +L+ G ++ P  L         + D ++        +  L G+ ++  +    
Sbjct: 186 RVVCATRNLSRGEILAPKDLCLKRINVSKIPDNYLTR------LDSLVGMRLKQSLASNG 239

Query: 107 PIRLEK-----LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
             R        L++RG+  +        R     ++         +  D + V
Sbjct: 240 FFRENMVEDSPLINRGDNVVLVARKGNMRIVATGVADQEG-----RLGDQIQV 287


>gi|153950687|ref|YP_001399630.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis IP 31758]
 gi|152962182|gb|ABS49643.1| flagella basal body P-ring formation protein FlgA [Yersinia
           pseudotuberculosis IP 31758]
          Length = 272

 Score = 40.5 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 19/147 (12%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E V T  P  ++ + ++K  L  G  V  + +E        V  G+I D        E+ 
Sbjct: 132 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDPD------EIL 185

Query: 95  GVLVRVPILKGDPIRLEKLVDR-----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
           G+ ++  I +   +   +L            L      G  A  + I+  +   G +   
Sbjct: 186 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKGEL--- 242

Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRV 176
                + V++LS  +     V  + RV
Sbjct: 243 -----IKVKNLSSGRVVTATVDGSGRV 264


>gi|83594176|ref|YP_427928.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Rhodospirillum rubrum ATCC 11170]
 gi|83577090|gb|ABC23641.1| Flageller protein FlgA [Rhodospirillum rubrum ATCC 11170]
          Length = 360

 Score = 40.5 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 6/119 (5%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +   + +    +    ++ P  + ++    + +    I D        +L G+  RV + 
Sbjct: 222 ETREIPVLSRRVGRDEIIGPRDVSFLRERLDRLPPDAITDAA------DLVGMAPRVAVR 275

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
            G P+R   +V        +L+    R   + +S            D V V+   S   
Sbjct: 276 DGQPLRRADVVRPTLLKKGALVTMELRMPGIAVSAQGRALDSGAEGDTVRVINTASNQT 334


>gi|292489137|ref|YP_003532024.1| flagella basal body P-ring formation protein FlgA [Erwinia
           amylovora CFBP1430]
 gi|292900256|ref|YP_003539625.1| flagella basal body P-ring formation protein [Erwinia amylovora
           ATCC 49946]
 gi|291200104|emb|CBJ47230.1| flagella basal body P-ring formation protein [Erwinia amylovora
           ATCC 49946]
 gi|291554571|emb|CBA22188.1| Flagella basal body P-ring formation protein flgA precursor
           [Erwinia amylovora CFBP1430]
 gi|312173295|emb|CBX81550.1| Flagella basal body P-ring formation protein flgA precursor
           [Erwinia amylovora ATCC BAA-2158]
          Length = 234

 Score = 40.1 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
            ++K +L  G V+  + +E  A   ++   G + D++      ++ G      +  G PI
Sbjct: 111 WVAKKNLPAGSVIRADDIETHAGSLDHQPAGILFDIN------QIVGQTTTRALNAGSPI 164

Query: 109 RLEKL 113
              +L
Sbjct: 165 VQNQL 169


>gi|253998492|ref|YP_003050555.1| flagella basal body P-ring formation protein FlgA [Methylovorus sp.
           SIP3-4]
 gi|313200567|ref|YP_004039225.1| flagella basal body p-ring formation protein flga [Methylovorus sp.
           MP688]
 gi|253985171|gb|ACT50028.1| flagella basal body P-ring formation protein FlgA [Methylovorus sp.
           SIP3-4]
 gi|312439883|gb|ADQ83989.1| flagella basal body P-ring formation protein FlgA [Methylovorus sp.
           MP688]
          Length = 242

 Score = 40.1 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 6/114 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
             L++   LA G VV    L + +     +  G   D       ++  G +V + +  G 
Sbjct: 119 QYLVAAAPLAQGRVVDSGDLLFESGDLAQLPPGIFTDP------EQAIGRIVNISMNAGT 172

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            +R E L           +    R     IS              V V +    
Sbjct: 173 VLRQEMLKASPVVQQGQTVTLITRGKGFSISAEGHALNNATDGQLVRVKVANGQ 226


>gi|317124027|ref|YP_004098139.1| SAF domain protein [Intrasporangium calvum DSM 43043]
 gi|315588115|gb|ADU47412.1| SAF domain protein [Intrasporangium calvum DSM 43043]
          Length = 270

 Score = 40.1 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
            A  +A   V+          T+     +   ++   +A G V++ + +     P E+  
Sbjct: 58  GAAGLAGSAVALGVSALRPAATDAGLPTV---VAVRAIAAGAVISASDVHVENRPVEHRP 114

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137
           +    D+      +         PI     +  E+L      GL +     + A T+ + 
Sbjct: 115 ESAAADIAAVVGRR------AAAPIEARGMLTGERLA---GAGLLAGRSDDRAAMTVPVM 165

Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179
             +  G  ++    VD+    S  +       V++  +V+A+
Sbjct: 166 DIALTG--VEAGGRVDLYATGSGEQ-------VVAGAQVLAV 198


>gi|169825596|ref|YP_001695771.1| hypothetical protein Bsph_p184 [Lysinibacillus sphaericus C3-41]
 gi|168994873|gb|ACA42412.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 316

 Score = 40.1 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 30/179 (16%)

Query: 1   MKLTRL---MGIVVSGVFA---LVAGIIAMRLVSPHHVQTEEVITENPAKFIN------- 47
           MK+  +   + I  S   A   L++G+    L   +  + EE+      K          
Sbjct: 1   MKIRFVTKKLIIAASLGAAAMLLISGVAFYFLYKSNVEKQEELRQNYKDKLAELEYTTEQ 60

Query: 48  ---VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              V     D+  G ++  ++++    P+  V    + DV    +         +     
Sbjct: 61  SELVYTLNTDVDKGQLIHKSMVQPSLVPKNAVPADAMTDVQFGASKY-----YAKANYKM 115

Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163
             P+            +   L K  R+       +  +   I+ +++VDV +     E 
Sbjct: 116 SQPVAESLF------YIGENLTKDIRSVEY---AAIELPSRIQKDEYVDVRIQFPTGED 165


>gi|83589608|ref|YP_429617.1| N-acetylneuraminate synthase [Moorella thermoacetica ATCC 39073]
 gi|83572522|gb|ABC19074.1| N-acetylneuraminate synthase [Moorella thermoacetica ATCC 39073]
          Length = 337

 Score = 40.1 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 10/97 (10%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76
           +VA     + +     +               L++  D+A G ++T + L     P   +
Sbjct: 251 VVAIRQVEKSLGDGIKRPAPGELAVMPAARRSLVAARDIAAGEIITDSCLTAKR-PGTGI 309

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
                           + G   R  I  G  +  + +
Sbjct: 310 PPNLW---------DVVVGRQARRDIAAGSILSWDMI 337


>gi|284989263|ref|YP_003407817.1| SAF domain-containing protein [Geodermatophilus obscurus DSM 43160]
 gi|284062508|gb|ADB73446.1| SAF domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 229

 Score = 40.1 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 56/180 (31%), Gaps = 13/180 (7%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               +++    ++  G  +T   L       + V               ++ G++    +
Sbjct: 61  GATSSIIAVAREVPWGQQLTAADLVEARVSADPV-----LTPIPYAQRDQVIGMVAATTL 115

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
             G  +  E L+++       L P G++   + +S        ++P D V +V V     
Sbjct: 116 TPGSLLTREALIEQP------LPPAGQQLVGVGVSAVQLPTTPLRPGDDVLLVPVAGSGG 169

Query: 163 RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
            +     V        +  +       L      + +       + A  +   +++V+ +
Sbjct: 170 AQSPTAPVAPRTVPATVVRSGSPGTDGL--RVVDVLVDAADGPDVAARAAAGLVAIVVVA 227


>gi|118588712|ref|ZP_01546120.1| Flageller protein FlgA [Stappia aggregata IAM 12614]
 gi|118438698|gb|EAV45331.1| Flageller protein FlgA [Stappia aggregata IAM 12614]
          Length = 331

 Score = 40.1 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 9/135 (6%)

Query: 42  PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101
             + ++VL+    +  G +V    L  +      V  G + +V      +++ G   R  
Sbjct: 189 ATEMVDVLVLVQPVRRGDIVREEDLNIIREARTKVPAGALTEV------EDIVGKQARTT 242

Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           +    P+    +           +        M ++  +         D +DV+   +L 
Sbjct: 243 LRANAPLSRNDVQRPILIERGEKITVTYVMPGMKLTSRAQAMDSGAKGDVIDVM---NLQ 299

Query: 162 ERKPTVTVVLSNIRV 176
            R+     + S  +V
Sbjct: 300 SRRIVPATITSRGQV 314


>gi|327454776|gb|EGF01431.1| SAF domain protein [Propionibacterium acnes HL087PA3]
 gi|328755832|gb|EGF69448.1| SAF domain protein [Propionibacterium acnes HL087PA1]
          Length = 166

 Score = 40.1 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   +  G V+  + L  V      +             + +++G    + I +G 
Sbjct: 9   EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 61

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +    ++        S +  GK    + ++ SS V GM++    V VV           
Sbjct: 62  ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDGTPHVL 114

Query: 167 VT 168
             
Sbjct: 115 TR 116


>gi|313765398|gb|EFS36762.1| SAF domain protein [Propionibacterium acnes HL013PA1]
 gi|313772616|gb|EFS38582.1| SAF domain protein [Propionibacterium acnes HL074PA1]
 gi|313810837|gb|EFS48551.1| SAF domain protein [Propionibacterium acnes HL083PA1]
 gi|313814319|gb|EFS52033.1| SAF domain protein [Propionibacterium acnes HL025PA1]
 gi|313815198|gb|EFS52912.1| SAF domain protein [Propionibacterium acnes HL059PA1]
 gi|313817183|gb|EFS54897.1| SAF domain protein [Propionibacterium acnes HL046PA2]
 gi|313821753|gb|EFS59467.1| SAF domain protein [Propionibacterium acnes HL036PA1]
 gi|313824356|gb|EFS62070.1| SAF domain protein [Propionibacterium acnes HL036PA2]
 gi|313828503|gb|EFS66217.1| SAF domain protein [Propionibacterium acnes HL063PA2]
 gi|313831956|gb|EFS69670.1| SAF domain protein [Propionibacterium acnes HL007PA1]
 gi|313834503|gb|EFS72217.1| SAF domain protein [Propionibacterium acnes HL056PA1]
 gi|314915959|gb|EFS79790.1| SAF domain protein [Propionibacterium acnes HL005PA4]
 gi|314916988|gb|EFS80819.1| SAF domain protein [Propionibacterium acnes HL050PA1]
 gi|314921507|gb|EFS85338.1| SAF domain protein [Propionibacterium acnes HL050PA3]
 gi|314926860|gb|EFS90691.1| SAF domain protein [Propionibacterium acnes HL036PA3]
 gi|314931169|gb|EFS95000.1| SAF domain protein [Propionibacterium acnes HL067PA1]
 gi|314954773|gb|EFS99179.1| SAF domain protein [Propionibacterium acnes HL027PA1]
 gi|314958940|gb|EFT03042.1| SAF domain protein [Propionibacterium acnes HL002PA1]
 gi|314961235|gb|EFT05336.1| SAF domain protein [Propionibacterium acnes HL002PA2]
 gi|314974504|gb|EFT18599.1| SAF domain protein [Propionibacterium acnes HL053PA1]
 gi|314977303|gb|EFT21398.1| SAF domain protein [Propionibacterium acnes HL045PA1]
 gi|314985596|gb|EFT29688.1| SAF domain protein [Propionibacterium acnes HL005PA1]
 gi|314987554|gb|EFT31645.1| SAF domain protein [Propionibacterium acnes HL005PA2]
 gi|314988981|gb|EFT33072.1| SAF domain protein [Propionibacterium acnes HL005PA3]
 gi|315081893|gb|EFT53869.1| SAF domain protein [Propionibacterium acnes HL078PA1]
 gi|315082613|gb|EFT54589.1| SAF domain protein [Propionibacterium acnes HL027PA2]
 gi|315086324|gb|EFT58300.1| SAF domain protein [Propionibacterium acnes HL002PA3]
 gi|315097575|gb|EFT69551.1| SAF domain protein [Propionibacterium acnes HL038PA1]
 gi|315099792|gb|EFT71768.1| SAF domain protein [Propionibacterium acnes HL059PA2]
 gi|315101901|gb|EFT73877.1| SAF domain protein [Propionibacterium acnes HL046PA1]
 gi|315110380|gb|EFT82356.1| SAF domain protein [Propionibacterium acnes HL030PA2]
 gi|327331573|gb|EGE73312.1| SAF domain protein [Propionibacterium acnes HL096PA2]
 gi|327335082|gb|EGE76793.1| SAF domain protein [Propionibacterium acnes HL097PA1]
 gi|327447032|gb|EGE93686.1| SAF domain protein [Propionibacterium acnes HL043PA1]
 gi|327449932|gb|EGE96586.1| SAF domain protein [Propionibacterium acnes HL043PA2]
 gi|328756612|gb|EGF70228.1| SAF domain protein [Propionibacterium acnes HL025PA2]
 gi|328758662|gb|EGF72278.1| SAF domain protein [Propionibacterium acnes HL020PA1]
 gi|328761703|gb|EGF75218.1| SAF domain protein [Propionibacterium acnes HL099PA1]
          Length = 166

 Score = 40.1 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   +  G V+  + L  V      +             + +++G    + I +G 
Sbjct: 9   EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 61

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +    ++        S +  GK    + ++ SS V GM++    V VV           
Sbjct: 62  ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDGTPHVL 114

Query: 167 VT 168
             
Sbjct: 115 TR 116


>gi|327537338|gb|EGF24071.1| LfgA (potential lateral flagellar protein FlgA) [Rhodopirellula
           baltica WH47]
          Length = 476

 Score = 40.1 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 6/91 (6%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
                 Q E ++         V++++  L  G  V P  + +   P   +         +
Sbjct: 314 ARSRTDQCEGIVRVTFTPKTAVVVARRPLQRGHRVGPGDVHFQPSPVNELS------GDR 367

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
              + E+ G+ V   I  G P+R        
Sbjct: 368 VMDVDEVMGMEVVGLIRSGVPLRPSDFAAPR 398


>gi|328543155|ref|YP_004303264.1| flagellar protein FlgA [polymorphum gilvum SL003B-26A1]
 gi|326412901|gb|ADZ69964.1| flagellar protein FlgA [Polymorphum gilvum SL003B-26A1]
          Length = 322

 Score = 40.1 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 6/90 (6%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           ++         ++    + ++V+     +  G ++ P  L  +  P + V    +     
Sbjct: 165 IAGAARSQTLTLSGVAREMVDVIALLQPIGRGSILKPEDLTVIRLPRQRVPSRAVTSPD- 223

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
                E+ G+  R  +  G P+        
Sbjct: 224 -----EIVGLAARTTLRPGQPLSRTDFERP 248


>gi|318604248|emb|CBY25746.1| flagellar basal-body P-ring formation protein FlgA [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 234

 Score = 40.1 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E  +T  P  ++ V ++K  L  G +V P+ +E           G+I D        E+ 
Sbjct: 94  EVAVTVKPDIYLPVWVAKNTLERGKLVAPDDIELKKKNISTAQGGYITDPD------EIV 147

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI---SSAVGGMIKPNDH 151
           G  V+  I     +   +L          L+ +G++   +       +   G  +K    
Sbjct: 148 GFTVKRRIRNLQVVIPSQLEQP------VLVTRGQQVLMIAEQDGIEARMFGEALKNGRK 201

Query: 152 VDVVMVRSLSERKPTVTVVLSNIRV 176
            +++ V+++S ++    +V    +V
Sbjct: 202 GELIKVKNISSKRTVTAMVDDVAKV 226


>gi|238755328|ref|ZP_04616671.1| Flagella basal body P-ring formation protein flgA [Yersinia ruckeri
           ATCC 29473]
 gi|238706464|gb|EEP98838.1| Flagella basal body P-ring formation protein flgA [Yersinia ruckeri
           ATCC 29473]
 gi|253317691|gb|ACT22780.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           ruckeri]
          Length = 219

 Score = 40.1 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           +S    Q    +          L++   LA G  +T   + +     + +  G + D   
Sbjct: 76  LSVRCGQQRRFLQTQVQVSGKYLVATRQLAAGEKLTEKEMTYKEGRLDTLPPGALLDARF 135

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKL 113
                   G L    I  G P+    L
Sbjct: 136 ------AKGTLALRHINAGQPLTRTML 156


>gi|315106591|gb|EFT78567.1| SAF domain protein [Propionibacterium acnes HL030PA1]
          Length = 166

 Score = 40.1 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 56/175 (32%), Gaps = 21/175 (12%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   +  G V+  + L  V      +             + +++G    + I +G 
Sbjct: 9   EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 61

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +    ++        S +  GK    + ++ SS V GM++    V VV           
Sbjct: 62  ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDG----- 109

Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLV 219
              VL+   +I               ST    +      A A+  A     L LV
Sbjct: 110 TPHVLTRGAIIRSLPTSGGGLIQGSPSTELVVVSTGSTDAAAIAVAGQGQPLGLV 164


>gi|224825773|ref|ZP_03698877.1| flagella basal body P-ring formation protein FlgA [Lutiella
           nitroferrum 2002]
 gi|224601997|gb|EEG08176.1| flagella basal body P-ring formation protein FlgA [Lutiella
           nitroferrum 2002]
          Length = 240

 Score = 40.1 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 14/131 (10%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++  DL  G V+  + +EW   P   + +G        ++  E  G+  R  + +G P+
Sbjct: 120 LVATRDLDAGKVLGADDVEWAQRPVYELEEG-------LHSPAEAVGLSSRSALRRGQPL 172

Query: 109 RLEKL--VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           R + L  V     G +  +   K A  +     +A G  ++     DV+ VR++   K  
Sbjct: 173 RRKLLEAVVLVRRGDAVEIVASKEAIVV-----TAPGESLESGRRNDVIRVRNVGSGKIL 227

Query: 167 VTVVLSNIRVI 177
              V    RV+
Sbjct: 228 RARVTEAGRVV 238


>gi|304438316|ref|ZP_07398257.1| flagella basal body P-ring formation protein FlgA [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304368682|gb|EFM22366.1| flagella basal body P-ring formation protein FlgA [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 254

 Score = 39.7 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 8/101 (7%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           VL++  D+ +   +TP          + + +  + D         L G +    I KG  
Sbjct: 131 VLVAMTDIRMDEAITPANAHVEESAVDTLPETTVTD------FDRLAGRVAGRYIRKGTV 184

Query: 108 IRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMI 146
           I    L        G    L       T+     +   G I
Sbjct: 185 ITPTLLAMPRVLTAGSPVTLVAENGGITIRAEGVALEAGRI 225


>gi|170725949|ref|YP_001759975.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           woodyi ATCC 51908]
 gi|169811296|gb|ACA85880.1| flagella basal body P-ring formation protein FlgA [Shewanella
           woodyi ATCC 51908]
          Length = 235

 Score = 39.7 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 9/116 (7%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V++++  L  G +++ + +        N+         Q + ++++ G  V+  I    
Sbjct: 114 PVVVARETLGPGDLLSNDDVIIEYVDRTNL------RGQQFDDIKQVVGTRVKRRIPPNQ 167

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
           PI    L     G   S+  +        +  +   G +    D + +    S   
Sbjct: 168 PIFSSNLCFVCKGDTVSIYARSANVVIKTVGEALRDGNL---GDRIRIKNTHSNKS 220


>gi|32477361|ref|NP_870355.1| LfgA (potential lateral flagellar protein FlgA) [Rhodopirellula
           baltica SH 1]
 gi|32447912|emb|CAD77432.1| similar to LfgA (potential lateral flagellar protein similar to
           FlgA) [Rhodopirellula baltica SH 1]
          Length = 477

 Score = 39.7 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 6/91 (6%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
                 Q E ++         V++++  L  G  V P  + +   P   +         +
Sbjct: 315 ARSRTDQCEGIVRVTFTPKTAVVVARRPLQRGHRVGPGDVHFQPSPVNELS------GDR 368

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
              + E+ G+ V   I  G P+R        
Sbjct: 369 VMDVDEVMGMEVVGLIRSGVPLRPSDFAAPR 399


>gi|238799103|ref|ZP_04642559.1| Flagella basal body P-ring formation protein flgA [Yersinia
           mollaretii ATCC 43969]
 gi|238717050|gb|EEQ08910.1| Flagella basal body P-ring formation protein flgA [Yersinia
           mollaretii ATCC 43969]
          Length = 234

 Score = 39.7 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  +T   +E      + +  G + +           G +    I  G P+ 
Sbjct: 114 VASRQLAAGAKITAQDVEMKQGRLDTLPPGALLEPQFAQ------GSVSLRQINAGQPLT 167

Query: 110 LEKL 113
              L
Sbjct: 168 RNML 171


>gi|328906782|gb|EGG26553.1| SAF domain protein [Propionibacterium sp. P08]
          Length = 195

 Score = 39.7 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 64/213 (30%), Gaps = 23/213 (10%)

Query: 7   MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66
           M +       +V  ++  +L+     +              VL  + D+  G V+    L
Sbjct: 1   MFVAAGIAIVVVGALLIAQLIHAGQTEN------------RVLEVRSDVGRGEVIRDTDL 48

Query: 67  EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
             V   +              + +  L G    V +  G  +    +     G   ++  
Sbjct: 49  VAVTVGQVGNVSTV-----PADQLDALVGKRAAVDLRSGSLLSAGAI-----GAADTVPA 98

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186
            GK    + ++      G +     + ++   +L+          +N +         S 
Sbjct: 99  PGKSLVGLKLAPGQVPIGDLTAGAKLRLIQTSALNGSATATDAANTNGQSWD-ATMAAST 157

Query: 187 ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
           +     +   +E+   +A  +    S  ++++V
Sbjct: 158 KGTDQVTLVNVEVKSGEAARIAQLTSQGRIAVV 190


>gi|212213133|ref|YP_002304069.1| hypothetical protein CbuG_1641 [Coxiella burnetii CbuG_Q212]
 gi|212011543|gb|ACJ18924.1| hypothetical exported protein [Coxiella burnetii CbuG_Q212]
          Length = 394

 Score = 39.7 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 42/240 (17%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R   ++     A+VA I+ +       +        + A  +++L+S  ++     
Sbjct: 31  MKKSR-FLLIFLVALAIVAMILGLWRPLERRLHPTSNPKSSEAPQVSILVSGLEVP---- 85

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
                     +      D       +   + E  G ++ + +  G P+     V      
Sbjct: 86  ----------WALSFFPD-------RDLLVTERKGRVLLIDLQSGKPVIK---VIAKINE 125

Query: 121 LSSLLPKGKRAATMDISISSAVGGMI-----KPNDHVD-VVMVRSLSERKPTVTVVLSNI 174
           ++S+   G     +           +     +   +V+ VV    ++ +     ++L NI
Sbjct: 126 VASVAESGLSGIAVHPHFQQNHWIYLYYTYRRNGRYVNKVVRYELMNNQLTNPKIILDNI 185

Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS----VAKLSLVLRSIADLNPSS 230
               +        R+  G    L +T   A+   AAQ+      K+   LR   D +  +
Sbjct: 186 ----LAARTHDGGRIKFGPDGYLYITTGDAQVAKAAQNPKSLAGKI---LRIKDDGSIPA 238


>gi|187478181|ref|YP_786205.1| flagellar basal body P-ring biosynthesis protein FlgA [Bordetella
           avium 197N]
 gi|115422767|emb|CAJ49295.1| flagella basal body P-ring formation protein [Bordetella avium
           197N]
          Length = 249

 Score = 39.7 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 10/128 (7%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
            ++   +  G  +T   L+       N+  G + D         + G+  R  I  G PI
Sbjct: 128 YVASRQIPAGQAITSEDLDSREGDLMNLPPGAMTDARS------IVGMQARHRINIGQPI 181

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168
           R   L D  +      +    R     +S          P   + V         +    
Sbjct: 182 RGSALRDAASISRGQNVRIIARGNGFVVSSEGQALEDGAPGATIQV----RTQSGQVVSG 237

Query: 169 VVLSNIRV 176
           V+    +V
Sbjct: 238 VLQPGGQV 245


>gi|323706341|ref|ZP_08117906.1| N-acetylneuraminate synthase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534303|gb|EGB24089.1| N-acetylneuraminate synthase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 347

 Score = 39.7 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +I+  D+  G ++T  +L     P   +   F            L G   R+ ILK   I
Sbjct: 292 IIAAKDIPSGSIITEEMLTTKR-PGTGLPPKFF---------DYLIGKKARIHILKDTII 341

Query: 109 RLEKL 113
               L
Sbjct: 342 DFSML 346


>gi|317406205|gb|EFV86454.1| flagella basal body P-ring formation protein [Achromobacter
           xylosoxidans C54]
          Length = 249

 Score = 39.7 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 6/106 (5%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
            ++   +A G  +TP  L         +  G I +       Q + G+     I  G P+
Sbjct: 128 YVASRMIAAGQALTPADLAPRDGDLVALPPGVITNP------QTVVGMTAAYRINAGQPV 181

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           +   L +  +    S +    R     +S          P   V V
Sbjct: 182 KGAALRNAQSVVRGSNVRINARGKGFVVSSEGQALDNAAPGATVQV 227


>gi|126668330|ref|ZP_01739289.1| flagellar basal body P-ring biosynthesis protein [Marinobacter sp.
           ELB17]
 gi|126627247|gb|EAZ97885.1| flagellar basal body P-ring biosynthesis protein [Marinobacter sp.
           ELB17]
          Length = 263

 Score = 39.7 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
             L++   LA G  +  +++            G I +       Q + G+ VR PI  G 
Sbjct: 139 PALVASRPLARGERLRADMVSLQTVVVNASRRGTIAE------AQSIIGMEVRRPINSGS 192

Query: 107 PIRLEKLVDRGN 118
            I  + L     
Sbjct: 193 LITPDLLAAPDA 204


>gi|123442788|ref|YP_001006765.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122089749|emb|CAL12602.1| flagella basal body P-ring formation protein FlgA [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 200

 Score = 39.7 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  +T   +E      + +  G + + +         G +   PI  G P+ 
Sbjct: 80  VAARQLAAGAKMTLQDIEMKQGRLDTLPPGALLEPNFAQ------GAVSLRPINAGQPLT 133

Query: 110 LEKL 113
              L
Sbjct: 134 RNML 137


>gi|163784419|ref|ZP_02179303.1| flagella basal body P-ring formation protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880310|gb|EDP73930.1| flagella basal body P-ring formation protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 317

 Score = 39.7 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           K    +++K  +  G +++ + ++      +N       D      + +L G  +R  + 
Sbjct: 188 KTTKAVVAKRYIPKGSIISYDDVKIDKVKAKN-------DERYFTNINKLIGKKLRFAVK 240

Query: 104 KGDPIRLEKLVDRG 117
           KG PI L+ L    
Sbjct: 241 KGQPITLKYLEKEY 254


>gi|167750751|ref|ZP_02422878.1| hypothetical protein EUBSIR_01729 [Eubacterium siraeum DSM 15702]
 gi|167656186|gb|EDS00316.1| hypothetical protein EUBSIR_01729 [Eubacterium siraeum DSM 15702]
          Length = 598

 Score = 39.7 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 63/194 (32%), Gaps = 25/194 (12%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV--VTPNILEWVAFPE 73
             +  + A + +    +    +  E   + + V I+K DL       V   I   +  P 
Sbjct: 97  GAILVVDATQGIEAQTLANTYLAIEQDLELVPV-INKIDLPSAHPDEVKEEIETVIGIPA 155

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLV-RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132
           +      +        ++E+   +V  VP  KGDP    K +   +   +          
Sbjct: 156 DEAP---LISAKMGINIKEVMEQVVKNVPAPKGDPNAPLKALIFDSYYDAYKG----VIV 208

Query: 133 TMDISISSAVGGMIKPNDHV---------DVVMVRSLSERKPTVTVVLSNIRVIAIDHNI 183
            + I       G +KP D +         DVV V  +  +       L    V  I  +I
Sbjct: 209 YVRIKD-----GTLKPGDRIRMMATGAEFDVVDVGYMGAKALENAKELRAGEVGYIAASI 263

Query: 184 DSDERVLVGSTATL 197
            S     VG T TL
Sbjct: 264 KSIGDTKVGDTVTL 277


>gi|165918705|ref|ZP_02218791.1| glucose/sorbosone dehydrogenase [Coxiella burnetii RSA 334]
 gi|165917640|gb|EDR36244.1| glucose/sorbosone dehydrogenase [Coxiella burnetii RSA 334]
          Length = 369

 Score = 39.7 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 82/240 (34%), Gaps = 42/240 (17%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK +R   ++     A+VA I+ +       +        + A  +++L+S      G+ 
Sbjct: 6   MKKSR-FLLIFLVALAIVAMILGLWRPLERRLHPTSNPKSSEAPQVSILVS------GLE 58

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           VT        +    + D       +   + E  G ++ + +  G P+     V      
Sbjct: 59  VT--------WALSFLPD-------RDLLVTERKGRVLLIDLQSGKPVIK---VIAKINE 100

Query: 121 LSSLLPKGKRAATMDISISSAVGGMI-----KPNDHVDVVMVRS-LSERKPTVTVVLSNI 174
           ++S+   G     +           +     +   +V+ V+    ++ +     ++L NI
Sbjct: 101 VASVAESGLSGIAVHPHFQQNHWIYLYYTYRRNGRYVNKVVRYELMNNQLTNPKIILDNI 160

Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS----VAKLSLVLRSIADLNPSS 230
               +        R+  G    L +T   A+   AAQ+      K+   LR   D +  +
Sbjct: 161 ----LAARTHDGGRIKFGPDGYLYITTGDAQVAKAAQNPKSLAGKI---LRIKDDGSIPA 213


>gi|29830223|ref|NP_824857.1| hypothetical protein SAV_3680 [Streptomyces avermitilis MA-4680]
 gi|29607334|dbj|BAC71392.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 164

 Score = 39.7 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVG 192
            + I+ ++ V  +++P D +DVV      +      VV +  RV  +      +     G
Sbjct: 80  PVRIADAATV-RLLRPGDRIDVVAA----DSGGETRVVATAARVTEVPDT--GEGMAESG 132

Query: 193 STATLELTPMQAKALVAAQSVAKLSLVL 220
           +   L +    A  L  A + ++L++ L
Sbjct: 133 ALVVLSVPRATAARLAGASTTSRLAVTL 160


>gi|227495683|ref|ZP_03925999.1| hypothetical protein HMPREF0044_1537 [Actinomyces coleocanis DSM
           15436]
 gi|226830915|gb|EEH63298.1| hypothetical protein HMPREF0044_1537 [Actinomyces coleocanis DSM
           15436]
          Length = 159

 Score = 39.7 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 49/161 (30%), Gaps = 18/161 (11%)

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
               + V         G +       +   + G      +  G+P+              
Sbjct: 14  ARHSKTVFVTLGFAVAGLLIWPLLFPSPSVVSGAGSTPVVSVGEPLPR------------ 61

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-KPTVTVVLSNIRVIAIDH 181
             L + + A  + +     V  + K  + +D+ +     +        V +++ V++   
Sbjct: 62  LELGRSRIALPVPV----GVANLFKSGNRIDIYVPGECKDSLNCPARRVAADVLVVS-AE 116

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222
              +       ST  L++T +  ++L        L  +L +
Sbjct: 117 PESAGWSGSTESTLVLDVTNIDIESLAGVSETTILRYILIN 157


>gi|330501133|ref|YP_004378002.1| SAF domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328915419|gb|AEB56250.1| SAF domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 234

 Score = 39.7 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 6/70 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+ +   +  G  ++   L+           GF       N+  E+ G   +  +  G 
Sbjct: 109 PVVHAARVIERGQTISAEQLQLQEVNIGKAPRGFY------NSFDEVVGQGAKRRVRAGQ 162

Query: 107 PIRLEKLVDR 116
            I    L   
Sbjct: 163 LIAPNLLTAP 172


>gi|256396011|ref|YP_003117575.1| SAF domain-containing protein [Catenulispora acidiphila DSM 44928]
 gi|256362237|gb|ACU75734.1| SAF domain protein [Catenulispora acidiphila DSM 44928]
          Length = 222

 Score = 39.7 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 20/200 (10%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++A  ++    V    V        + VL+    + VG V++ + L+ V      +  G 
Sbjct: 38  VVAGSMLVLGAVVVGAVAFVKVGGRVPVLVVGAPVQVGQVISADDLKVVD-----IAPGT 92

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
           +  V   +  +++ G    VP++  + +  + +        ++  P            + 
Sbjct: 93  LAHVAFADEEKQVVGQPAAVPLVPDEVLTWQLIG-------AASYPPAGYGVATTQMKAG 145

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELT 200
           A    +     V+VV   S +     V   L+ +  ++                 ++   
Sbjct: 146 AYPPHLVAGARVEVVAPASAAGAAAQVVASLAAVTEVSTPT-------DSGDVVVSVLAD 198

Query: 201 PMQAKALVAAQSVAKLSLVL 220
              AKA+ +A +   LSLVL
Sbjct: 199 QNSAKAVSSA-TPGSLSLVL 217


>gi|87310232|ref|ZP_01092363.1| hypothetical protein DSM3645_27428 [Blastopirellula marina DSM
           3645]
 gi|87286981|gb|EAQ78884.1| hypothetical protein DSM3645_27428 [Blastopirellula marina DSM
           3645]
          Length = 599

 Score = 39.7 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 22/141 (15%)

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
               ++ G  ++ E  V           P G R     + +       +K  D VDV +V
Sbjct: 52  AVTSVVLGQSMKNEAEVATRKADELKNRPIGMREFRAVVEVED--PSTLKAGDEVDVALV 109

Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVL-------------------VGSTATLE 198
               +       +L  +RV +++                                  TL+
Sbjct: 110 TLGGDHGHV-EKILKKVRVQSVEVPRGEKPEPEKVVAAEEEAAAEHVAPELYPTRVVTLQ 168

Query: 199 LTPMQAKALVAAQSVAKLSLV 219
           +T  Q +    A +   L L 
Sbjct: 169 VTSGQLEKARVADAQGILRLS 189


>gi|291326358|ref|ZP_06124207.2| flagella basal body P-ring formation protein FlgA [Providencia
           rettgeri DSM 1131]
 gi|291314705|gb|EFE55158.1| flagella basal body P-ring formation protein FlgA [Providencia
           rettgeri DSM 1131]
          Length = 212

 Score = 39.3 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 7/72 (9%), Positives = 15/72 (20%), Gaps = 6/72 (8%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
                ++  ++  G  +    +         +  G   D         L G +    I  
Sbjct: 86  TGQYYVATRNINRGEPIQFVDIGTKKGLLHKLPAGASTDKI------ALRGAVALRNIPA 139

Query: 105 GDPIRLEKLVDR 116
           G           
Sbjct: 140 GQTFTKSMTRQP 151


>gi|149177070|ref|ZP_01855678.1| hypothetical protein PM8797T_12051 [Planctomyces maris DSM 8797]
 gi|148844135|gb|EDL58490.1| hypothetical protein PM8797T_12051 [Planctomyces maris DSM 8797]
          Length = 795

 Score = 39.3 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 60/166 (36%), Gaps = 14/166 (8%)

Query: 1   MK---LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57
           M+     + + + +  + A+  G       +  +++          +  +  +    + V
Sbjct: 10  MRELFAAKGVLVAIISIIAVGIGCFIAMSSTYDNLEYSRQSYYRVCQMADFSVELKKVPV 69

Query: 58  GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE-LDGVLVRVPILKGDPIRLEKLVDR 116
           G + T   +  V      +     +       +++ L G +V +P  +  PI   ++V +
Sbjct: 70  GDLATLTDVAGVT---SILPRIVFEVTASLEGVEKPLSGQVVSLPAHENAPI--NRIVIK 124

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
                +    +      + I+ + A    ++P DH+ +++   L E
Sbjct: 125 QGSYFTDQRQEE-----VIINDAFARAHNLRPGDHIQLILNNRLQE 165


>gi|254785365|ref|YP_003072794.1| flagella basal body P-ring formation protein FlgA [Teredinibacter
           turnerae T7901]
 gi|237683904|gb|ACR11168.1| flagella basal body P-ring formation protein FlgA [Teredinibacter
           turnerae T7901]
          Length = 228

 Score = 39.3 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +      F  V+I+ G +  G  +T   +        ++  G++ D  +      + G+ 
Sbjct: 94  VPVQVETFEEVVIAAGAIGRGAQITAGDVVTQRMNTSHLTGGYLRDPAR------VVGLE 147

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136
            R  +  G+ I+L ++           +    R++ + +
Sbjct: 148 ARRMLRPGEIIKLNQVKAPDVVKKGQTVVLEARSSALRV 186


>gi|92114102|ref|YP_574030.1| flageller protein FlgA [Chromohalobacter salexigens DSM 3043]
 gi|91797192|gb|ABE59331.1| flagellar protein FlgA [Chromohalobacter salexigens DSM 3043]
          Length = 251

 Score = 39.3 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
            M  V   + Q    +    +  +  L++   +  G  ++ ++L W            +D
Sbjct: 104 VMVGVRCSNDQQVRYVQARVSASVRFLVAATAIQRGQRLSADMLGWERADVSRRPRNALD 163

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
           D        +  G +V   ++KG  +R ++L    
Sbjct: 164 DPS------QAIGKVVMQRLVKGMALRGDRLRQPY 192


>gi|289704896|ref|ZP_06501313.1| hypothetical protein HMPREF0569_0663 [Micrococcus luteus SK58]
 gi|289558392|gb|EFD51666.1| hypothetical protein HMPREF0569_0663 [Micrococcus luteus SK58]
          Length = 747

 Score = 39.3 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++   L  G  +T + +   +        G      QPN +  L G  +   + +GD  
Sbjct: 405 LVAARPLQAGATITADDVTVKS-------PG---RGLQPNELPRLVGRTLHREMAEGDFF 454

Query: 109 RLEKLVDRGNGG 120
               L D    G
Sbjct: 455 FAGDLTDTVPTG 466


>gi|332533181|ref|ZP_08409050.1| flagellar basal-body P-ring formation protein FlgA
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037463|gb|EGI73917.1| flagellar basal-body P-ring formation protein FlgA
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 235

 Score = 39.3 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
            + +     +   V+++  +L  G V+T + L     P           +   +    L 
Sbjct: 102 AQYVHVRVVEMAPVVVATANLTRGEVITKSHLSIEMKPTH------FVRIQYLDDPTMLI 155

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMI 146
           G   +  I  G P+ L ++     G  S  +    R   +  +  +   G +
Sbjct: 156 GSRSKRNIRSGMPVLLNQICMVCKGD-SVNIYANLRGLRIKTTGIALEDGTL 206


>gi|290959701|ref|YP_003490883.1| hypothetical protein SCAB_53061 [Streptomyces scabiei 87.22]
 gi|260649227|emb|CBG72341.1| putative membrane protein [Streptomyces scabiei 87.22]
          Length = 148

 Score = 39.3 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDS 185
           P  +  A + I+ ++ V  +++P D VDV+     +    T  +V    RV      + +
Sbjct: 58  PAERVTAPVRIADAATV-RLLRPGDRVDVIAAEESATGAGTARIVARGARV----SKVPA 112

Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
            +    G+   L +    A  L  A + ++L++ L
Sbjct: 113 ADAAESGALVVLTVPRRTAARLAGAGATSRLAVTL 147


>gi|307131613|ref|YP_003883629.1| flagellar basal-body P-ring formation protein flgA [Dickeya
           dadantii 3937]
 gi|306529142|gb|ADM99072.1| Flagellar basal-body P-ring formation protein flgA [Dickeya
           dadantii 3937]
          Length = 228

 Score = 39.3 bits (90), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 6/90 (6%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           VS    Q    +        N +++   +  G  +T   +  +    + +    +     
Sbjct: 85  VSVRCSQERRFVQVEVQVTGNYVVAAAPIGRGAELTSGDIRTIRGRIDQLPPRAL----- 139

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
               +E  G +    I  G  +    +   
Sbjct: 140 -FTPEEAQGAVALRDIAPGQALTQVMIRKP 168


>gi|330895616|gb|EGH27923.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 115

 Score = 39.3 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 25/123 (20%)

Query: 1   MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAK--------------- 44
           M     M + V  +  AL+AG + + +  P  V  +   +  P                 
Sbjct: 1   MSSRATMVLAVLFLLGALIAGYLGIVVGRPTEVLVDTPPSAPPLTTEEITPPPTPPVEDA 60

Query: 45  -FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
              NV++   D+     +T + L       +    G         A+ ++ G      + 
Sbjct: 61  LRHNVVVLARDIPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTLT 112

Query: 104 KGD 106
            G 
Sbjct: 113 AGS 115


>gi|330465095|ref|YP_004402838.1| SAF domain-containing protein [Verrucosispora maris AB-18-032]
 gi|328808066|gb|AEB42238.1| SAF domain-containing protein [Verrucosispora maris AB-18-032]
          Length = 220

 Score = 39.3 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 77/219 (35%), Gaps = 27/219 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R   + ++ +   + G+ +   V+                  + L     + VG VV
Sbjct: 25  RRVRPGLLGLAVLLIALGGLGSAFAVTSVRA------------TGSYLAVARTVEVGSVV 72

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           + + L  V      V  G   D      + ++ G+   V +  G  + + +L D+     
Sbjct: 73  SASDLVSVQ-----VAGGQGLDPVPAGRLADVVGMRAAVSLAPGTLLTMAQLTDQP---- 123

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
             LL  G++   + +  +      ++P D V +V          + + V      +    
Sbjct: 124 --LLGPGQQQIALGLRTAQVPAPKLRPGDQVLLVSTPRDDSSSGSSSGVTRFTATVTDAV 181

Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           + D  + V+      L L      A+VA  +  ++++VL
Sbjct: 182 STDGRDEVV----VYLALAVRDVPAVVAMAAQDRIAVVL 216


>gi|261420563|ref|YP_003254245.1| pseudaminic acid synthase [Geobacillus sp. Y412MC61]
 gi|319768232|ref|YP_004133733.1| pseudaminic acid synthase [Geobacillus sp. Y412MC52]
 gi|261377020|gb|ACX79763.1| pseudaminic acid synthase [Geobacillus sp. Y412MC61]
 gi|317113098|gb|ADU95590.1| pseudaminic acid synthase [Geobacillus sp. Y412MC52]
          Length = 351

 Score = 39.3 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 11/91 (12%)

Query: 23  AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82
           A + +        +    +     ++ I   D+  G  +T   +  +  P   +   +  
Sbjct: 271 AWQSIGGIQYGPTKAEEASLKHRRSLYIV-RDMRAGETLTKENVRAIR-PGNGLPPKYF- 327

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
                    +L G  V+  + KG P+  + L
Sbjct: 328 --------DQLLGKTVKRDVKKGTPVTWDLL 350


>gi|119899031|ref|YP_934244.1| chaperon for flagellar basal body P-ring formation [Azoarcus sp.
           BH72]
 gi|119671444|emb|CAL95357.1| chaperon for flagellar basal body P-ring formation [Azoarcus sp.
           BH72]
          Length = 256

 Score = 39.3 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
             L++   L  G ++ P  L         + D  + DV       +  G   R  I +G 
Sbjct: 133 EYLVTAQPLRAGQIIGPADLVRRDGDLATLPDNTLTDVA------QASGQYTRFAIAQGS 186

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           P+R + L           +      +   +S          P D V V
Sbjct: 187 PLRADMLRIPPAVRQGQTVQVVTVGSGFRVSSEGVALNNGAPGDPVRV 234


>gi|315099727|gb|EFT71703.1| SAF domain protein [Propionibacterium acnes HL059PA2]
          Length = 175

 Score = 39.3 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 52/177 (29%), Gaps = 16/177 (9%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL+    +  G +V    +   +   +             + + ++ G    V +  G 
Sbjct: 15  QVLVMTRAVGQGDIVRNADIGLTSVAVDRAVATI-----PASQLDKIVGRHALVDLSPGQ 69

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
            +    + +         +  G+    + ++        +     V V+      +    
Sbjct: 70  LLGSHSVGE-------LRVAPGRARIGLKLAAGRLPTVSLPAGARVTVIETSPDKDTGTV 122

Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
             +  ++  V+A     +            +E+    A  L    S+ +++LV R  
Sbjct: 123 SNLSTADAVVVAAPKATNDHGSW----LVDVEVDSGNAARLADLASLDRIALVERGQ 175


>gi|288921587|ref|ZP_06415859.1| SAF domain protein [Frankia sp. EUN1f]
 gi|288347005|gb|EFC81310.1| SAF domain protein [Frankia sp. EUN1f]
          Length = 230

 Score = 39.3 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 10/163 (6%)

Query: 20  GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79
           G+    L+      T            + ++    +  G ++    L        +    
Sbjct: 31  GVTVAALLVLAGAGTGAWAVTWSGDETDAVVLTRPVRRGELIETTDLAVARV---SAAGT 87

Query: 80  FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139
            +  V    A + L G    + +  G  +  E          S+L P G     + ++  
Sbjct: 88  AVRLVSPQVARRALVGRQALLDLPAGTLVTPEM-------AGSALPPAGSARVGLRLAPE 140

Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
           +     ++P D V VV+   +S     V   +    V+ +D +
Sbjct: 141 ALPSPQVQPGDWVQVVIPDEISGAPAVVADAVRVAAVLPVDDD 183


>gi|227494992|ref|ZP_03925308.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831444|gb|EEH63827.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 211

 Score = 39.3 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 73/223 (32%), Gaps = 43/223 (19%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
              L+G+ +  +   +  ++  +                         +  D+  G ++T
Sbjct: 23  PKFLIGVFLIIISISLTTLLINKARGGQ----------------EYYEATKDIPAGQIIT 66

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
            + L+ ++   +              A Q  +  L    I KG+ +    LV   +    
Sbjct: 67  LSDLKVISARVDG--------DAYLRAGQLTENTLTTRTINKGEMLPKAALVKENSQA-- 116

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---VTVVLSNIRVIAI 179
                  R   ++++    +   +K    V++ +V   +   P       +   + V   
Sbjct: 117 ------YRQIVINVTPK--IPTSVKVGSKVELWVVPEENGNSPEPNKAQRLSEQVIVY-- 166

Query: 180 DHNIDSDERVLVGSTATLELTPMQAK---ALVAAQSVAKLSLV 219
            +  +S  R+L      +E++  +A+    L  A +  +L LV
Sbjct: 167 -NLPESQNRILTERAQAVEISVPEAELPVILEHANNQHQLVLV 208


>gi|332162905|ref|YP_004299482.1| flagella basal body P-ring formation protein FlgA [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325667135|gb|ADZ43779.1| Flagella basal body P-ring formation protein FlgA [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330863355|emb|CBX73478.1| hypothetical protein YEW_ES20730 [Yersinia enterocolitica W22703]
          Length = 234

 Score = 39.3 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E  +T  P  ++ V ++K  L  G +V P+ +E           G+I D        E+ 
Sbjct: 94  EVAVTVKPDIYLPVWVAKNTLERGKLVVPDDIELKKKNISTAQGGYITDPD------EIV 147

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI---SSAVGGMIKPNDH 151
           G  V+  I     +   +L          L+ +G++   +       +   G  +K    
Sbjct: 148 GFTVKRRIRNLQVVIPSQLEQP------VLVTRGQQVLMIAEQDGIEARMFGEALKNGRK 201

Query: 152 VDVVMVRSLSERKPTVTVVLSNIRV 176
            +++ V+++S ++    +V    +V
Sbjct: 202 GELIKVKNISSKRTVTAMVDDVAKV 226


>gi|95929875|ref|ZP_01312616.1| Flageller protein FlgA [Desulfuromonas acetoxidans DSM 684]
 gi|95134171|gb|EAT15829.1| Flageller protein FlgA [Desulfuromonas acetoxidans DSM 684]
          Length = 243

 Score = 39.3 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 36/107 (33%), Gaps = 12/107 (11%)

Query: 45  FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
             +V++++  L  G +++   +  V      + +           ++ + G LV   +  
Sbjct: 118 KADVVVAQQSLKRGTIISAEDVSLVHLDVSRIRE-------PIFDLKNVVGKLVARNVRA 170

Query: 105 GDPIRLEKLVDRGNGGLSSLL-----PKGKRAATMDISISSAVGGMI 146
           G P+  + +         S +       G     + I++     G +
Sbjct: 171 GQPVEFKSVETPPLVHKGSFVKLVARRSGMMLTAIGIALEDGSKGEV 217


>gi|283852033|ref|ZP_06369308.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio sp. FW1012B]
 gi|283572583|gb|EFC20568.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio sp. FW1012B]
          Length = 357

 Score = 38.9 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILE-WVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
           +        L +  DL  G  +TP+ LE     PE+ +             +  L G  +
Sbjct: 289 QTMVVQRRALRAVRDLPAGHALTPDDLEALRPIPEDGLPPY---------ELDALLGKTL 339

Query: 99  RVPILKGDPIRLEKLVD 115
              + +G+ +    L  
Sbjct: 340 ARALGRGEHLTRRHLAR 356


>gi|83858807|ref|ZP_00952329.1| hypothetical protein OA2633_04871 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853630|gb|EAP91482.1| hypothetical protein OA2633_04871 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 315

 Score = 38.9 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +    ++P+       ++    +  +V +    +A G  +T   ++WV  PE  V     
Sbjct: 156 LFRAQIAPYPGGDPLTVSGRAQRVADVPVLNRTIARGDTITAADVDWVRLPENQV----- 210

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
                  A   L G+  R  +    P+R   +   
Sbjct: 211 -RGEIILAETGLVGMTARRALTADRPVRSYDVEPP 244


>gi|302552049|ref|ZP_07304391.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302469667|gb|EFL32760.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 162

 Score = 38.9 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 130 RAATMDISISSAVG-GMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDER 188
           RA T  + I+ A    +++P D VDV+             VV    RV         +  
Sbjct: 73  RAVTAPVRIADAAAVRLLRPGDRVDVIAAEETVAGGD-ARVVARGARV--TKVPEPEEGV 129

Query: 189 VLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
              G+   L +    A  L  A + A+L++ L
Sbjct: 130 ADGGALVVLSVPRATAARLAGASATARLAVTL 161


>gi|209559186|ref|YP_002285658.1| hypothetical protein Spy49_0642 [Streptococcus pyogenes NZ131]
 gi|209540387|gb|ACI60963.1| hypothetical protein Spy49_0642 [Streptococcus pyogenes NZ131]
          Length = 422

 Score = 38.9 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 1  MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55
          M+  + M  VV+ + AL+   +   L+     +     +  P      +++ GD+
Sbjct: 38 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNELAAQKSAQPKVKTARVVANGDI 92


>gi|139474001|ref|YP_001128717.1| hypothetical protein SpyM51175 [Streptococcus pyogenes str.
          Manfredo]
 gi|134272248|emb|CAM30500.1| putative membrane protein [Streptococcus pyogenes str. Manfredo]
          Length = 397

 Score = 38.9 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 1  MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55
          M+  + M  VV+ + AL+   +   L+     +     +  P      +++ GD+
Sbjct: 5  MQYKKTMATVVALIVALLLFGLIYDLLGVQKNKLAAQKSAQPKVKTARVVANGDI 59


>gi|94990197|ref|YP_598297.1| capsule biosynthesis protein capA [Streptococcus pyogenes
          MGAS10270]
 gi|94543705|gb|ABF33753.1| Capsule biosynthesis protein capA [Streptococcus pyogenes
          MGAS10270]
          Length = 430

 Score = 38.9 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 1  MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55
          M+  + M  VV+ + AL+   +   L+     +     +  P      +++ GD+
Sbjct: 38 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNELAAQKSAQPKVKTARVVANGDI 92


>gi|94992194|ref|YP_600293.1| capsule biosynthesis protein capA [Streptococcus pyogenes
          MGAS2096]
 gi|94545702|gb|ABF35749.1| Capsule biosynthesis protein capA [Streptococcus pyogenes
          MGAS2096]
          Length = 290

 Score = 38.9 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 1  MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55
          M+  + M  VV+ + AL+   +   L+     +     +  P      +++ GD+
Sbjct: 38 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNKLAAQKSAQPKVKTARVVANGDI 92


>gi|71903278|ref|YP_280081.1| capsule biosynthesis protein [Streptococcus pyogenes MGAS6180]
 gi|94988318|ref|YP_596419.1| capsule biosynthesis protein [Streptococcus pyogenes MGAS9429]
 gi|71802373|gb|AAX71726.1| capsule biosynthesis protein [Streptococcus pyogenes MGAS6180]
 gi|94541826|gb|ABF31875.1| capsule biosynthesis protein [Streptococcus pyogenes MGAS9429]
          Length = 430

 Score = 38.9 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 1  MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55
          M+  + M  VV+ + AL+   +   L+     +     +  P      +++ GD+
Sbjct: 38 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNKLAAQKSAQPKVKTARVVANGDI 92


>gi|15674859|ref|NP_269033.1| hypothetical protein SPy_0818 [Streptococcus pyogenes M1 GAS]
 gi|71910445|ref|YP_281995.1| capsule biosynthesis protein [Streptococcus pyogenes MGAS5005]
 gi|306827577|ref|ZP_07460858.1| CapA domain protein [Streptococcus pyogenes ATCC 10782]
 gi|13621994|gb|AAK33754.1| hypothetical protein SPy_0818 [Streptococcus pyogenes M1 GAS]
 gi|71853227|gb|AAZ51250.1| capsule biosynthesis protein [Streptococcus pyogenes MGAS5005]
 gi|304430229|gb|EFM33257.1| CapA domain protein [Streptococcus pyogenes ATCC 10782]
          Length = 430

 Score = 38.9 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 1  MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55
          M+  + M  VV+ + AL+   +   L+     +     +  P      +++ GD+
Sbjct: 38 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNELAAQKSAQPKVKTARVVANGDI 92


>gi|21910087|ref|NP_664355.1| hypothetical protein SpyM3_0551 [Streptococcus pyogenes MGAS315]
 gi|21904278|gb|AAM79158.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
          Length = 393

 Score = 38.9 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 1  MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55
          M+  + M  VV+ + AL+   +   L+     +     +  P      +++ GD+
Sbjct: 1  MQYKKTMATVVALIVALLLFGLIYDLLGVQKNKLAAQKSAQPKVKTARVVANGDI 55


>gi|28896215|ref|NP_802565.1| hypothetical protein SPs1303 [Streptococcus pyogenes SSI-1]
 gi|28811466|dbj|BAC64398.1| hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 430

 Score = 38.9 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 1  MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55
          M+  + M  VV+ + AL+   +   L+     +     +  P      +++ GD+
Sbjct: 38 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNKLAAQKSAQPKVKTARVVANGDI 92


>gi|257069197|ref|YP_003155452.1| SAF domain-containing protein [Brachybacterium faecium DSM 4810]
 gi|256560015|gb|ACU85862.1| SAF domain-containing protein [Brachybacterium faecium DSM 4810]
          Length = 213

 Score = 38.9 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 63/202 (31%), Gaps = 33/202 (16%)

Query: 1   MKLTRLMG----IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLA 56
           M+L R       ++V  V  + + ++   LVS               +   VL+ K  + 
Sbjct: 8   MRLRRPRWKDPRLIVGIVLVVASVLMGAVLVSRLS------------ETTTVLVVKSAIV 55

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G  +    L  V     +  D ++ D+         +G +    I  G+ + L  +   
Sbjct: 56  PGDALDDAELTTVELRLGDQTDHYVGDLGAIP-----EGAVATRAIQSGELLPLSAVGQA 110

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT--VVLSNI 174
            +  L        R   + +   +AV   + P   V++       +        +++ + 
Sbjct: 111 SDVPL--------RPVVIPV--EAAVAESVVPGATVELWHTAPAGDDGQNAQAGMLVPDA 160

Query: 175 RVIAIDHNIDSDERVLVGSTAT 196
            V  +D       R +      
Sbjct: 161 VVRRVDEGSSLGMRSMSVEVLV 182


>gi|197120087|ref|YP_002140514.1| N-acetylneuraminic acid synthase-like protein [Geobacter
           bemidjiensis Bem]
 gi|197089447|gb|ACH40718.1| N-acetylneuraminic acid synthase-related protein [Geobacter
           bemidjiensis Bem]
          Length = 338

 Score = 38.9 bits (89), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 10/89 (11%)

Query: 25  RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84
            ++                     +++   L  G  +T   +     P   +   F    
Sbjct: 259 AMMGSGVKMPAASEKTTRINNRKSIVAARALPAGHRLTAEDIAVKR-PGFGIPPRF---- 313

Query: 85  HQPNAMQELDGVLVRVPILKGDPIRLEKL 113
                 +EL G ++  P+ + + I   KL
Sbjct: 314 -----REELPGSVLNEPVEQDEVIPWSKL 337


>gi|2494515|sp|Q56892|FLGA_YEREN RecName: Full=Flagella basal body P-ring formation protein flgA;
           Flags: Precursor
 gi|793897|emb|CAA88191.1| flgA [Yersinia enterocolitica]
          Length = 224

 Score = 38.9 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  +T   ++      + +  G + + +         G +    I  G P+ 
Sbjct: 104 VAARQLAAGEKMTLQDIKMKQGRLDTLPPGALLEPNFAQ------GAVSLRQINAGQPLT 157

Query: 110 LEKL 113
              L
Sbjct: 158 RNML 161


>gi|288919641|ref|ZP_06413969.1| SAF domain protein [Frankia sp. EUN1f]
 gi|288348930|gb|EFC83179.1| SAF domain protein [Frankia sp. EUN1f]
          Length = 274

 Score = 38.9 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 13/112 (11%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++  DL VG +V    L  V+   ++         +  +   EL G  +  P+ +G+ +
Sbjct: 64  VVAAADLPVGHLVVEGDLRTVSAQLDHATSD---RYYPGDRRSELVGATLARPVSRGELL 120

Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
                                R   + +         + P DHVDV + +  
Sbjct: 121 SGADFAGASATA--------TRLVPVIVKA--GRLPALTPGDHVDVFVYQPD 162


>gi|327398887|ref|YP_004339756.1| flagella basal body P-ring formation protein FlgA [Hippea maritima
           DSM 10411]
 gi|327181516|gb|AEA33697.1| flagella basal body P-ring formation protein FlgA [Hippea maritima
           DSM 10411]
          Length = 295

 Score = 38.9 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
           +   +  +  +K   + ++  D+  G ++TP+ + +     + V   ++ +         
Sbjct: 160 KKISITAKCSSKGTLIPVAAKDIESGSIITPDDITFKT--SDRVLSTYLTN------KPS 211

Query: 93  LDGVLVRVPILKGDPIRLE 111
           +   +    I KG P  L 
Sbjct: 212 IINRVAISFIKKGSPFTLS 230


>gi|222053733|ref|YP_002536095.1| flagella basal body P-ring formation protein FlgA [Geobacter sp.
           FRC-32]
 gi|221563022|gb|ACM18994.1| flagella basal body P-ring formation protein FlgA [Geobacter sp.
           FRC-32]
          Length = 226

 Score = 38.9 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
              +  +A+ +     V+    +         ++++   L  G V+    +         
Sbjct: 71  GWGSANLALIVRVDGRVERNVPVKVEVEAMAEMVVAVRPLERGEVIDAADVAVQKRGLSR 130

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE---KLVDRGNGGLSSLLPKGKRAA 132
           +   F+ DV       E+ G  VR  I   +PIR +   ++    +G L +++ + +   
Sbjct: 131 LQGRFVRDVD------EVVGKRVRTAIRGNNPIRPDFLERVPLIKSGQLVTIVAENE--- 181

Query: 133 TMDISISSAVGGMIKPNDHVDV 154
           ++ I+ +          D V V
Sbjct: 182 SLRITAAGKARNSGAEGDTVMV 203


>gi|318605238|emb|CBY26736.1| flagellar basal-body P-ring formation protein FlgA [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 226

 Score = 38.9 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  +T   ++      + +  G + + +         G +    I  G P+ 
Sbjct: 106 VAARQLAAGEKMTLQDIKMKQGRLDTLPPGALLEPNFAQ------GAVSLRQINAGQPLT 159

Query: 110 LEKL 113
              L
Sbjct: 160 RNML 163


>gi|332305609|ref|YP_004433460.1| flagella basal body P-ring formation protein FlgA [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172938|gb|AEE22192.1| flagella basal body P-ring formation protein FlgA [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 236

 Score = 38.9 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 41/119 (34%), Gaps = 9/119 (7%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +   V++    ++ G ++  + ++ V           +      + + ++ G  ++  + 
Sbjct: 112 QMQPVVVISNAVSPGTILNQSNIKLVDMNR------ALLRRTTFSTLDDVLGARIKRRVR 165

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
            G PI    L     G  + ++        +  +  +   G I   D + V   RS  +
Sbjct: 166 PGQPITPNNLCFVCKGD-TIVINASNPMMQVKATGVAMQDGNI--GDTISVTNSRSKKQ 221


>gi|66045280|ref|YP_235121.1| YD repeat-containing protein [Pseudomonas syringae pv. syringae
            B728a]
 gi|63255987|gb|AAY37083.1| YD repeat [Pseudomonas syringae pv. syringae B728a]
          Length = 1682

 Score = 38.9 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 16/181 (8%)

Query: 1    MKLTRLMGIVVSGVFALVAGI--IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58
            M +   + + V  VF  V     +A   ++        V+           ++ G LA G
Sbjct: 1448 MGIQTWIMLAVGIVFTAVGAYATVASFGLAAPGSVPVTVLGMTMTAQTAAYVATGLLAAG 1507

Query: 59   MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIRLEKLVD 115
             V+         +      +                ++ G + R  + K       K   
Sbjct: 1508 TVLGAASTAATTYGAVKGNETAFRLGEYLAYAAIPLDIAGGVFRSAV-KSAIKAASKASS 1566

Query: 116  RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
            R     +S +  G    T+D S   +V G  +           S+    P   V +  +R
Sbjct: 1567 RRVSETASRVSVG----TIDDSPVDSVTGT-RRGS-----APASMDAPGPVGGVRIPRVR 1616

Query: 176  V 176
            V
Sbjct: 1617 V 1617


>gi|303241174|ref|ZP_07327682.1| hypothetical protein AceceDRAFT_3030 [Acetivibrio cellulolyticus
           CD2]
 gi|302591301|gb|EFL61041.1| hypothetical protein AceceDRAFT_3030 [Acetivibrio cellulolyticus
           CD2]
          Length = 350

 Score = 38.9 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 29/183 (15%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV-------ITENPAKFINVLISKG 53
           M +      V+  V  ++      ++   +  Q +E          +       V +   
Sbjct: 15  MIIITGTVFVLFVVSGVLGIFQYFKMKGNYQKQVDEYSIKVKSYEKQIEQSLRTVYVPIE 74

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           DL     +  ++ + +        D ++D            G L++  +    P+    L
Sbjct: 75  DLKYNTKLEESMFDTIEILSSLPKDQYMDKEDF--------GKLLKTDLKAQTPLMKYML 126

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173
                   +  +    R A      +  +   I  ND VDV +     E      +VLS 
Sbjct: 127 Q-------ADKVDDDLRDAEF---NTLTLQTNIAKNDFVDVRIRFPNGED----YIVLSK 172

Query: 174 IRV 176
            +V
Sbjct: 173 KKV 175


>gi|288818840|ref|YP_003433188.1| sialic acid synthase [Hydrogenobacter thermophilus TK-6]
 gi|288788240|dbj|BAI69987.1| sialic acid synthase [Hydrogenobacter thermophilus TK-6]
 gi|308752427|gb|ADO45910.1| pseudaminic acid synthase [Hydrogenobacter thermophilus TK-6]
          Length = 349

 Score = 38.9 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
             E   KF   L +  D+  G V+    ++ V         G+      P  ++++ G  
Sbjct: 283 RQEEMRKFARSLFAVKDIKAGEVINEENIKSVR-------PGY---GLHPKHLKDVLGKR 332

Query: 98  VRVPILKGDPIRLEKL 113
            RV I KG P++ E L
Sbjct: 333 ARVDIPKGTPLKWEFL 348


>gi|157147106|ref|YP_001454425.1| flagellar basal body P-ring biosynthesis protein FlgA [Citrobacter
           koseri ATCC BAA-895]
 gi|157084311|gb|ABV13989.1| hypothetical protein CKO_02883 [Citrobacter koseri ATCC BAA-895]
          Length = 263

 Score = 38.9 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 15/143 (10%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
            +T  P  ++ V+I+K  L  G V++ + +        +    ++ D        E  G+
Sbjct: 125 AVTVKPDVYLPVVIAKNSLERGQVLSASDVSIKKLNISSTRGNYLTDPD------EAIGL 178

Query: 97  LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS---ISSAVGGMIKPNDHVD 153
            V+  I +  PI L +L          L+ +G+R   +       +  +G  +K     +
Sbjct: 179 TVKRRIRELQPITLTQLESP------VLVERGQRVLMIAEQGGVEARTMGEAMKKGRKGE 232

Query: 154 VVMVRSLSERKPTVTVVLSNIRV 176
           ++ V++ S  +    +V     V
Sbjct: 233 MIKVKNESSERVVSAIVADAGVV 255


>gi|109899408|ref|YP_662663.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Pseudoalteromonas atlantica T6c]
 gi|109701689|gb|ABG41609.1| flagella basal body P ring formation protein FlgA
           [Pseudoalteromonas atlantica T6c]
          Length = 236

 Score = 38.9 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 41/119 (34%), Gaps = 9/119 (7%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
           +   V++    ++ G ++  + +E +           +      + + ++ G  ++  + 
Sbjct: 112 QMQPVVVISNAVSPGTILNQSNIELINMNR------ALLRRTTFSNVDDVMGARIKRRVR 165

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
            G PI    L     G  + ++        +  +  +   G I   D + V   RS  +
Sbjct: 166 PGQPITPNNLCFVCKGD-TIIINASNSMMQVKATGVAMQDGNI--GDTISVTNSRSKKQ 221


>gi|332161318|ref|YP_004297895.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325665548|gb|ADZ42192.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 226

 Score = 38.9 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  +T   ++      + +  G + + +         G +    I  G P+ 
Sbjct: 106 VAARQLAAGEKMTLQDIKMKQGRLDTLPPGALLEPNFAQ------GAVSLRQINAGQPLT 159

Query: 110 LEKL 113
              L
Sbjct: 160 RNML 163


>gi|256397696|ref|YP_003119260.1| SAF domain-containing protein [Catenulispora acidiphila DSM 44928]
 gi|256363922|gb|ACU77419.1| SAF domain protein [Catenulispora acidiphila DSM 44928]
          Length = 197

 Score = 38.9 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 20/167 (11%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL     +A G VVT + ++ V     +        +       E+ G +  VP+  G 
Sbjct: 32  PVLAVAQPIAAGQVVTQDDVKIVKVGAAS-----DLGLVPSINEAEVVGHVAAVPLAAGT 86

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---LSER 163
            +    +      G +   P G+    + +  + A    +   D V+V        ++  
Sbjct: 87  LLTAHMV------GTADFPPPGQAVIGVALK-AGAFPPRLGVGDRVNVWPGPDVAAVASA 139

Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210
                 + SN  V ++          +  +  TL +    A  +  A
Sbjct: 140 SSAPVALASNAVVTSVGSA-----DSVGTTVVTLLVDAQAAPKVTQA 181


>gi|294678479|ref|YP_003579094.1| sialic acid synthase [Rhodobacter capsulatus SB 1003]
 gi|294477299|gb|ADE86687.1| sialic acid synthase [Rhodobacter capsulatus SB 1003]
          Length = 342

 Score = 38.6 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 26  LVSPHHVQTEEVITENPAKFINV-LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84
            ++  + +      E   +F    +++  DL  G ++T   + W   P      G+    
Sbjct: 262 WIASRNPKERTAAEEPVYRFARASVVADRDLPAGHLITEADI-WARRPGSGEIAGY---- 316

Query: 85  HQPNAMQELDGVLVRVPILKGDPIRLEKLV 114
                  ++ G      + +   ++   L 
Sbjct: 317 ----DFDKVVGKRTTRALPRNTQLKWSDLA 342


>gi|257387509|ref|YP_003177282.1| N-acylneuraminate-9-phosphate synthase [Halomicrobium mukohataei
           DSM 12286]
 gi|257169816|gb|ACV47575.1| N-acylneuraminate-9-phosphate synthase [Halomicrobium mukohataei
           DSM 12286]
          Length = 354

 Score = 38.6 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 10/98 (10%)

Query: 16  ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
           A+    +A R       Q       N +     L +  DL+ G V++ N +  +      
Sbjct: 257 AVTLSRLAARARGNAEKQPTAGERRNKSTTRKSLHAAVDLSAGEVLSSNDINILR----- 311

Query: 76  VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
                  D   P     + G ++   +  GDPI    +
Sbjct: 312 -----PTDGLSPKHYDTVIGAVLETDLGAGDPITTANV 344


>gi|108807169|ref|YP_651085.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Antiqua]
 gi|108812487|ref|YP_648254.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Nepal516]
 gi|145598614|ref|YP_001162690.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Pestoides F]
 gi|108776135|gb|ABG18654.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Nepal516]
 gi|108779082|gb|ABG13140.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Antiqua]
 gi|145210310|gb|ABP39717.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Pestoides F]
          Length = 251

 Score = 38.6 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  ++   ++      + +  G + D H         G + +  I  G P+ 
Sbjct: 131 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFAQ------GAVSQRQINAGQPLT 184

Query: 110 LEKL 113
              L
Sbjct: 185 RNML 188


>gi|22126394|ref|NP_669817.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis KIM 10]
 gi|45441413|ref|NP_992952.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis biovar Microtus str. 91001]
 gi|162419453|ref|YP_001606469.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis Angola]
 gi|165926043|ref|ZP_02221875.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165938691|ref|ZP_02227246.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010841|ref|ZP_02231739.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166210809|ref|ZP_02236844.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401018|ref|ZP_02306521.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420243|ref|ZP_02311996.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425844|ref|ZP_02317597.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469716|ref|ZP_02334420.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           FV-1]
 gi|270486649|ref|ZP_06203723.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           KIM D27]
 gi|294504034|ref|YP_003568096.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis
           Z176003]
 gi|21959381|gb|AAM86068.1|AE013854_4 putative flagella basal body P-ring formation protein [Yersinia
           pestis KIM 10]
 gi|45436274|gb|AAS61829.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Microtus str. 91001]
 gi|162352268|gb|ABX86216.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Angola]
 gi|165913305|gb|EDR31927.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922247|gb|EDR39424.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990185|gb|EDR42486.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207989|gb|EDR52469.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961938|gb|EDR57959.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049407|gb|EDR60815.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055243|gb|EDR65040.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|262361780|gb|ACY58501.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis
           D106004]
 gi|262366084|gb|ACY62641.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis
           D182038]
 gi|270335153|gb|EFA45930.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           KIM D27]
 gi|294354493|gb|ADE64834.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis
           Z176003]
          Length = 254

 Score = 38.6 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  ++   ++      + +  G + D H         G + +  I  G P+ 
Sbjct: 134 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFAQ------GAVSQRQINAGQPLT 187

Query: 110 LEKL 113
              L
Sbjct: 188 RNML 191


>gi|330877761|gb|EGH11910.1| bifunctional UDP-glucuronic acid
           decarboxylase/UDP-4-amino-4-deoxy-L-arabinose
           formyltransferase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 663

 Score = 38.6 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 59/203 (29%), Gaps = 15/203 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRL-VSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M    ++          +  ++     ++      ++   +     +  L ++ D+ V  
Sbjct: 1   MSPKAVVFAYHDIGCVGLQALLDAGYDIAAVFTHADDPAEKTFFGSVAQLCARHDIPVHA 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
              PN   WV    +   D            ++L G  +      G       L+ R  G
Sbjct: 61  PEDPNHPLWVERIGKLAPDFIFS-----FYYRQLLGEPLLAYAKNGALNLHGSLLPRYRG 115

Query: 120 GLSS----LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVV 170
              +    +  + +   T+   +  A  G I     V +    +        R+   +++
Sbjct: 116 RAPANWVLVNGESETGVTLHQMVKRADAGPIVAQQRVSISATDTALTLHGKLREAASSLL 175

Query: 171 LSNIRVIAIDHNIDSDERVLVGS 193
              + ++A      + +     +
Sbjct: 176 CETLPLLAQGQLSGTPQDESKAT 198


>gi|315127359|ref|YP_004069362.1| flagellar biosynthesis; assembly of basal-body periplasmic P-ring
           [Pseudoalteromonas sp. SM9913]
 gi|315015873|gb|ADT69211.1| flagellar biosynthesis; assembly of basal-body periplasmic P-ring
           [Pseudoalteromonas sp. SM9913]
          Length = 213

 Score = 38.6 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
            + +     +   V+++  +LA G V+TP+ L     P   +   +++D         L 
Sbjct: 80  AQYVHVRITESAPVVVATTNLARGEVITPSHLSIDMRPAHFIRAQYLEDP------TALI 133

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP--KGKRAATMDISISSAVGG 144
           G   +  I +G P+ L ++     G   ++    KG R  T  I++     G
Sbjct: 134 GSRSKRNIREGMPVLLNQICMVCKGDSVTIYANIKGLRVKTTGIALEDGTLG 185


>gi|330965148|gb|EGH65408.1| bifunctional UDP-glucuronic acid
           decarboxylase/UDP-4-amino-4-deoxy-L-arabinose
           formyltransferase [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 663

 Score = 38.6 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 59/203 (29%), Gaps = 15/203 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRL-VSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59
           M    ++          +  ++     ++      ++   +     +  L ++ D+ V  
Sbjct: 1   MSPKAVVFAYHDIGCVGLQALLDAGYDIAAVFTHADDPAEKTFFGSVAQLCARHDIPVHA 60

Query: 60  VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119
              PN   WV    +   D            ++L G  +     KG       L+    G
Sbjct: 61  PEDPNHPLWVERIGKLTPDFIFS-----FYYRQLLGEPLLTCAKKGALNLHGSLLPHYRG 115

Query: 120 GLSS----LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVV 170
              +    +  + +   T+   +  A  G I     V +    +        R+   +++
Sbjct: 116 RAPANWVLVNGESETGVTLHQMVKRADAGPIVAQQRVSISATDTALTLHGKLREAASSLL 175

Query: 171 LSNIRVIAIDHNIDSDERVLVGS 193
              + ++A      + +     +
Sbjct: 176 CETLPLLAQGQLSGTPQDESKAT 198


>gi|291336858|gb|ADD96390.1| predicted flagellar basal body P ring biosynthesis protein
           [uncultured organism MedDCM-OCT-S09-C206]
          Length = 239

 Score = 38.6 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 56/152 (36%), Gaps = 14/152 (9%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
            +    +     +      ++V +   +++ G V++   L + A PE  +   +      
Sbjct: 94  SANLSAKIVSSESIPTDNRLSVAVLIKNISKGQVISEEYLGFEARPERQIHGAY------ 147

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKL--VDRGNGGLSSLLPKGKRAATMDISISSAVGG 144
            N +  + G   +  I  G  ++   L  V   +   S L+    +A T+  S  +   G
Sbjct: 148 -NHISGVLGRKAKNNIAAGTILKARHLDTVYSVDKNDSVLVIAANKAITITTSAIALENG 206

Query: 145 MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
            +      D++ V+++   K    ++    +V
Sbjct: 207 QVG-----DMIAVKNVKSEKTFKVIITGKKKV 233


>gi|194754543|ref|XP_001959554.1| GF12932 [Drosophila ananassae]
 gi|190620852|gb|EDV36376.1| GF12932 [Drosophila ananassae]
          Length = 287

 Score = 38.6 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 5/132 (3%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLIS--KGDLAVG--MVVTPNILEWVAFPEENVFDGFI 81
            V   +   E +  +         ++    +++     V+T +   WV      V    +
Sbjct: 32  YVGRAYHNGEMLPAKVVPNKQQAYVAWGGQEISKHDFEVLTGDHFSWVPASGGEVPPFAL 91

Query: 82  DDVHQPNAMQELDGV-LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
                 +      G    +  +  G      + +    GG    L   +     ++ +SS
Sbjct: 92  RVGQTADGEALFVGRGYFQGSLTPGKVHPSHQCLYIPYGGEEHRLEAYEVLVQPEVWVSS 151

Query: 141 AVGGMIKPNDHV 152
           + G  I P   V
Sbjct: 152 SSGRGIVPGTVV 163


>gi|116620574|ref|YP_822730.1| Altronate dehydratase [Candidatus Solibacter usitatus Ellin6076]
 gi|116223736|gb|ABJ82445.1| Altronate dehydratase [Candidatus Solibacter usitatus Ellin6076]
          Length = 511

 Score = 38.6 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 38/133 (28%), Gaps = 10/133 (7%)

Query: 26  LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF----- 80
           LV    V   E    +     NV +++  L  G  +  + L       + +  G      
Sbjct: 2   LVEITKVPNAENSVIHLHPTDNVAVARVPLPAGTELRVDGLPVTV--RDAIPAGHKIALW 59

Query: 81  -IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139
            I          ++ G   ++PI  G  I    L       L    P  + A       +
Sbjct: 60  DIAPGETVERYGQVIGR-AKLPIDAGRHIHTHNLAYEELA-LDYEFPTTETAVPTPRPDA 117

Query: 140 SAVGGMIKPNDHV 152
               G  + +  V
Sbjct: 118 PTFLGYPREDGRV 130


>gi|311694437|gb|ADP97310.1| flagella basal body P-ring formation protein FlgA [marine bacterium
           HP15]
          Length = 222

 Score = 38.6 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
             L++   L  G  +T  +L   +    +   G I D       ++  G+ VR  +  G 
Sbjct: 98  PALVAARPLTRGERITEGLLAKQSVEINSSRRGVITDS------KQAIGMEVRRAVNAGS 151

Query: 107 PIRLEKLVDRGN 118
            +  + L     
Sbjct: 152 LVTPDMLSAPNA 163


>gi|186895110|ref|YP_001872222.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis PB1/+]
 gi|186698136|gb|ACC88765.1| flagella basal body P-ring formation protein FlgA [Yersinia
           pseudotuberculosis PB1/+]
          Length = 259

 Score = 38.2 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  ++   ++      + +  G + D H         G + +  I  G P+ 
Sbjct: 139 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFAQ------GAVSQRQINAGQPLT 192

Query: 110 LEKL 113
              L
Sbjct: 193 RNML 196


>gi|24215366|ref|NP_712847.1| endoflagellar basal body P-ring biosynthesis protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45657205|ref|YP_001291.1| flagella basal body P-ring formation protein precursor [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|24196477|gb|AAN49865.1| endoflagellar basal body P-ring biosynthesis protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45600443|gb|AAS69928.1| flagella basal body P-ring formation protein precursor [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 296

 Score = 38.2 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 14/138 (10%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
              + + VL +K  L  G+ +T    +            F  +    +   EL G  +  
Sbjct: 169 QVEQMVTVLKAKRSLNQGIKITNEDFQEEEI--------FTSEEILDSPGNELLGSTLLK 220

Query: 101 PILKGDPIRLEKL--VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158
            + +G+  R + +  +     G   L+   K +  +   + +   G I   + V V    
Sbjct: 221 NMNEGEIFRKKHVRKIQDVQRGGEILMIYHKGSLVLKTKVKALSSGNI--GEEVQV--TT 276

Query: 159 SLSERKPTVTVVLSNIRV 176
              E +    VV  N  V
Sbjct: 277 HSRENQMKAKVVDKNTVV 294


>gi|259502399|ref|ZP_05745301.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169661|gb|EEW54156.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 190

 Score = 38.2 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 8/151 (5%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M   + + I ++ V   +  I++  L    +      ++  P +      S+   A G  
Sbjct: 1   MNRNKKLVIGLAVVALGLGVILSFMLGQQSNAHQSAAVSSQPVRESRSARSQQSTAPGQQ 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG---DPIRLEKLVDRG 117
            + +      F +E+        +   +     +  LV +  L G   +      L D  
Sbjct: 61  SSSSQPATAQFSDEDYQLMAFLKLVDEDGSGAAEKQLVSLDKLHGGDDEITMWNDLGDGH 120

Query: 118 NGGL-----SSLLPKGKRAATMDISISSAVG 143
           + G      +  +   +   T D    S +G
Sbjct: 121 SIGFGAHTTAMRVKGDQVEVTFDDETPSGMG 151


>gi|318040475|ref|ZP_07972431.1| membrane-associated Zn-dependent protease [Synechococcus sp.
           CB0101]
          Length = 362

 Score = 38.2 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 65/208 (31%), Gaps = 19/208 (9%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN-----------PAKFINVLISKGDLAV 57
           + V    A++AG+I +         T + I  +             +   V  +   + +
Sbjct: 1   MGVLTALAILAGLIVVHEAGHFFAATWQGIRVSGFSVGFGPVLLERQRRGVQFALRAIPL 60

Query: 58  GMVVT-PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
           G  V+ P+  E    P ++     + +   P     +   ++   +L    +  + LV  
Sbjct: 61  GGFVSFPDDDEESTIPADD--PDLLRNRPIPQRALVIAAGVLANLLLAWSVLVAQGLVVG 118

Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176
              G S+             S  +A    ++P D   ++    ++       V     RV
Sbjct: 119 IPAGFSATPG---VLVAGVQSGQAAAASGLRPGDR--ILSADGVNLGGGQSAVAQLVERV 173

Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQA 204
                     +    G T T+ LTP   
Sbjct: 174 KGAPDQTLQLQAERAGQTVTIALTPADV 201


>gi|327393467|dbj|BAK10889.1| flagella basal body P-ring formation protein FlgA precursor
           [Pantoea ananatis AJ13355]
          Length = 219

 Score = 38.2 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 6/90 (6%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           V+ +  +    I        + L++   +A G  VT           +N+          
Sbjct: 76  VAANCGENRRYIQVQVQVTGDYLVATKLIARGSTVTKEDFRIENGRLDNLPP------RT 129

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
               + +   +V   I  G P+    L   
Sbjct: 130 LFTDESVADSVVLRDIQPGQPVSQSMLRQP 159


>gi|238793994|ref|ZP_04637612.1| Flagella basal body P-ring formation protein flgA [Yersinia
           intermedia ATCC 29909]
 gi|238726626|gb|EEQ18162.1| Flagella basal body P-ring formation protein flgA [Yersinia
           intermedia ATCC 29909]
          Length = 226

 Score = 38.2 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LAVG  +  + ++      + +  G + + H         G +    I  G P+ 
Sbjct: 106 VAGRQLAVGEKIAASDIQMKQGRLDTLPPGALLEPHFAQ------GAVSLRRINAGQPLT 159

Query: 110 LEKL 113
              L
Sbjct: 160 RNML 163


>gi|256823743|ref|YP_003147706.1| WD40 domain-containing protein beta Propeller [Kangiella koreensis
           DSM 16069]
 gi|256797282|gb|ACV27938.1| WD40 domain protein beta Propeller [Kangiella koreensis DSM 16069]
          Length = 1068

 Score = 38.2 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 5/132 (3%)

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138
            F  +  +P++   L G  V    ++G+ +  + +V   +  + ++  +G  A       
Sbjct: 650 NFTVEADKPDSSIALVGAKVIT--MEGEQVIEDGVVIVEDNRIKAVGKRGDVAIPSGAKT 707

Query: 139 SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLE 198
               G  I P   VDV      +  +       + +  +A              + A   
Sbjct: 708 IDVAGKTIIPG-LVDVHWHGPYANDQIQPQTNWNAMASLAFGVTTTH--NPSADTEAVFS 764

Query: 199 LTPMQAKALVAA 210
            + MQ   ++ A
Sbjct: 765 ASEMQKAGVITA 776


>gi|149366255|ref|ZP_01888290.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           CA88-4125]
 gi|218928918|ref|YP_002346793.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis CO92]
 gi|229896238|ref|ZP_04511408.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Pestoides A]
 gi|229897173|ref|ZP_04512329.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229897899|ref|ZP_04513050.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229902869|ref|ZP_04517986.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Nepal516]
 gi|115347529|emb|CAL20438.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           CO92]
 gi|149292668|gb|EDM42742.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           CA88-4125]
 gi|229680316|gb|EEO76415.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Nepal516]
 gi|229688940|gb|EEO81005.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229693510|gb|EEO83559.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701161|gb|EEO89190.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           Pestoides A]
 gi|320015471|gb|ADV99042.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 232

 Score = 38.2 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  ++   ++      + +  G + D H         G + +  I  G P+ 
Sbjct: 112 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFAQ------GAVSQRQINAGQPLT 165

Query: 110 LEKL 113
              L
Sbjct: 166 RNML 169


>gi|292669969|ref|ZP_06603395.1| flagellar basal body P-ring biosynthesis protein FlgA [Selenomonas
           noxia ATCC 43541]
 gi|292648381|gb|EFF66353.1| flagellar basal body P-ring biosynthesis protein FlgA [Selenomonas
           noxia ATCC 43541]
          Length = 255

 Score = 38.2 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 8/102 (7%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL++  D+     ++P          + V +  + D         L+G +    I +  
Sbjct: 131 RVLVAMTDIRAETEISPANARVEERAVDTVPELTLTD------FTRLEGRVAGRYIRRDT 184

Query: 107 PIRLEKLVDR--GNGGLSSLLPKGKRAATMDISISSAVGGMI 146
            I    L        G +  L        +     +   G I
Sbjct: 185 VITPPMLAMPLVVRAGNAVELVHNANGILVRAEGVAIESGRI 226


>gi|271962849|ref|YP_003337045.1| hypothetical protein Sros_1304 [Streptosporangium roseum DSM 43021]
 gi|270506024|gb|ACZ84302.1| hypothetical protein Sros_1304 [Streptosporangium roseum DSM 43021]
          Length = 242

 Score = 38.2 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 55/180 (30%), Gaps = 17/180 (9%)

Query: 41  NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                +  +     +  G  +    +  V   +  +      D  + +          RV
Sbjct: 73  RSGDRVTAIQIVQQVGTGQRIPQTAMREVQIADTGIDYVAYADRVRVSEN------YARV 126

Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-MVRS 159
            +L G  +  + +V       S+ L  GK    + +        +++  D V V+ +   
Sbjct: 127 TLLPGTLLTGKMVVSS-----SAELGPGKAQVGLALKPGQLPSTLLQ-GDRVQVIHVSGR 180

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                    V+     V ++     +  R  V    T+ +    +  + A  S  +++L 
Sbjct: 181 GEGAGTQSRVLAQAALVHSVG----AAGRNGVSGQVTIIVDATVSPTIAAYASNGEIALA 236


>gi|51596007|ref|YP_070198.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis IP 32953]
 gi|51589289|emb|CAH20910.1| flagella basal body P-ring formation protein FlgA [Yersinia
           pseudotuberculosis IP 32953]
          Length = 232

 Score = 38.2 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  ++   ++      + +  G + D H         G + +  I  G P+ 
Sbjct: 112 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFAQ------GAVSQRQINAGQPLT 165

Query: 110 LEKL 113
              L
Sbjct: 166 RNML 169


>gi|255021350|ref|ZP_05293398.1| Flagellar basal-body P-ring formation protein flgA
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969213|gb|EET26727.1| Flagellar basal-body P-ring formation protein flgA
           [Acidithiobacillus caldus ATCC 51756]
          Length = 226

 Score = 38.2 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +     +   ++++   L  G V+T   L  +     ++           +++ E  G  
Sbjct: 93  VPVRIVQSQKIVVAAHSLTAGTVLTAGDLALMPGNAASLA------GTPLSSLSEATGRT 146

Query: 98  VRVPILKGDPIRLEKLVDR---GNGGLSSLLPKGK--RAATMDISISSAVGG 144
           +R   + G PI    L        G   +L+ +G   R  T+  +I +   G
Sbjct: 147 LRFGTVAGQPITQSMLAAPIWVHGGNNVTLVAEGDGVRITTLAQAIENGHPG 198


>gi|94994116|ref|YP_602214.1| Capsule biosynthesis protein capA [Streptococcus pyogenes
          MGAS10750]
 gi|94547624|gb|ABF37670.1| Capsule biosynthesis protein capA [Streptococcus pyogenes
          MGAS10750]
          Length = 430

 Score = 38.2 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 1  MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55
          M+  + M  VV+ + AL+   +   L+     +     +  P      +++ GD+
Sbjct: 38 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNELAAQKSAQPKVKAARVVANGDI 92


>gi|260906843|ref|ZP_05915165.1| SAF domain-containing protein [Brevibacterium linens BL2]
          Length = 216

 Score = 38.2 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 53/183 (28%), Gaps = 18/183 (9%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
                   V  S   L  G VV+ + L        ++ D ++                VR
Sbjct: 36  SAANATTRVWASASPLVPGQVVSADDLTIAEVNLADIGDKYLSADAGIPDRSS-----VR 90

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM--- 156
             I  G+ +    L                R   +D+  + +V  ++     VDV     
Sbjct: 91  TVIAAGELLPASALAPVAEL--------DGRIVAIDV--AGSVPTVVDTGSLVDVWAQPE 140

Query: 157 VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
            + L +       ++++  V  I   + S              +   +  L A    + L
Sbjct: 141 SKGLDDEGIDPEQIVTSAPVSNISREVGSFGVGDGARIEVFVASTELSDVLGALDGNSVL 200

Query: 217 SLV 219
           S+V
Sbjct: 201 SVV 203


>gi|330860611|emb|CBX70908.1| flagella basal body P-ring formation protein flgA [Yersinia
           enterocolitica W22703]
          Length = 161

 Score = 38.2 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  +T   ++      + +  G + + +         G +    I  G P+ 
Sbjct: 41  VAARQLAAGEKMTLQDIKMKQGRLDTLPPGALLEPNFAQ------GAVSLRQINAGQPLT 94

Query: 110 LEKL 113
              L
Sbjct: 95  RNML 98


>gi|251789164|ref|YP_003003885.1| flagellar basal body P-ring biosynthesis protein FlgA [Dickeya zeae
           Ech1591]
 gi|247537785|gb|ACT06406.1| flagella basal body P-ring formation protein FlgA [Dickeya zeae
           Ech1591]
          Length = 222

 Score = 38.2 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 25/90 (27%), Gaps = 6/90 (6%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           VS    Q    I        + +++   ++ G  +    +  V    + +    +     
Sbjct: 79  VSVSCNQDRRFIQVEVQVTGSYVVAAAPVSRGSELAAGDIRTVRGRIDQLPPRAL----- 133

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
               +E  G +    I  G  I    +   
Sbjct: 134 -FTPEEAQGAIALRDIAPGQAITQVMIRKP 162


>gi|161484755|ref|NP_670755.2| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis KIM 10]
 gi|161511337|ref|NP_994331.2| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis biovar Microtus str. 91001]
 gi|161760560|ref|YP_071832.2| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis IP 32953]
 gi|218927908|ref|YP_002345783.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pestis CO92]
 gi|270487677|ref|ZP_06204751.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           KIM D27]
 gi|115346519|emb|CAL19395.1| putative flagella basal body P-ring formation protein [Yersinia
           pestis CO92]
 gi|270336181|gb|EFA46958.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis
           KIM D27]
          Length = 237

 Score = 38.2 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E V T  P  ++ + ++K  L  G  V  + +E        V  G+I D        E+ 
Sbjct: 97  EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDPD------EIL 150

Query: 95  GVLVRVPILKGDPIRLEKLVDR 116
           G+ ++  I +   +   +L   
Sbjct: 151 GLTIKRRIRQLQAVIPSQLEQP 172


>gi|238752870|ref|ZP_04614335.1| Flagella basal body P-ring formation protein FlgA [Yersinia rohdei
           ATCC 43380]
 gi|238708909|gb|EEQ01162.1| Flagella basal body P-ring formation protein FlgA [Yersinia rohdei
           ATCC 43380]
          Length = 215

 Score = 38.2 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 60/153 (39%), Gaps = 17/153 (11%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
           E  +T  P  ++ V ++K  L  G VV P+ +E            +I +        E+ 
Sbjct: 75  EVAVTVKPDIYLPVWVAKNTLERGKVVAPSDIELKKKNISAAQGSYITNPD------EIV 128

Query: 95  GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI---SSAVGGMIKPNDH 151
           G  V+  I     +   +L          L+ +G+    +       +  +G  +K    
Sbjct: 129 GFTVKRRIRNLQIVTSAQLEQP------VLVTRGQHVVMIAEQDGIEARMLGEALKNGRK 182

Query: 152 VDVVMVRSLSERKPTVTVVLS--NIRVIAIDHN 182
            +++ V++LS ++    +V     +R++ I ++
Sbjct: 183 GELIKVKNLSSKRTISAIVEDIGKVRMLGITNS 215


>gi|84515250|ref|ZP_01002612.1| polysialic acid capsule biosynthesis protein SiaC [Loktanella
           vestfoldensis SKA53]
 gi|84510533|gb|EAQ06988.1| polysialic acid capsule biosynthesis protein SiaC [Loktanella
           vestfoldensis SKA53]
          Length = 343

 Score = 37.8 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +++  DL  G V+T   + W   P      G+           ++ G      + +   +
Sbjct: 286 VVADRDLPAGHVITEADI-WARRPGSGEIAGY--------DFDKVLGRTTTRALPRNTQL 336

Query: 109 RLEKL 113
           +   L
Sbjct: 337 KWSDL 341


>gi|237653587|ref|YP_002889901.1| flagella basal body P-ring formation protein FlgA [Thauera sp.
           MZ1T]
 gi|237624834|gb|ACR01524.1| flagella basal body P-ring formation protein FlgA [Thauera sp.
           MZ1T]
          Length = 242

 Score = 37.8 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A   + LI+   L  G V+ P  L         + D  + D        +  G   
Sbjct: 111 QARVAVVADYLIAARPLRAGQVLGPADLGQRRGDLTALPDNLLTDP------TQASGHHT 164

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           R+ +  G P+R + L           +      A   ++          P + V V
Sbjct: 165 RIAVAAGSPLRGDMLRVPHAVRQGQTVSVLGVGAGFRVASEGRAMNNAAPGEKVRV 220


>gi|114320051|ref|YP_741734.1| flageller protein FlgA [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226445|gb|ABI56244.1| flagellar protein FlgA [Alkalilimnicola ehrlichii MLHE-1]
          Length = 238

 Score = 37.8 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 10/119 (8%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           ++      + VL++   L  G  +  + +        ++   +  +       + L G  
Sbjct: 105 VSARVDTQVEVLVAARPLRRGERLRADSVTTERRQLASLHRPYETE------AEHLIGKE 158

Query: 98  VRVPILKGDPIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           +R  + +GD I    L        G S  L  G     +     +   G++   D V V
Sbjct: 159 LRRSLRRGDLIAGNALAAPQLVQRGRSVTLRAGGGRVQVTGQGKALESGVL--GDIVRV 215


>gi|87306344|ref|ZP_01088491.1| putative flagella basal body P-ring formation protein
           [Blastopirellula marina DSM 3645]
 gi|87290523|gb|EAQ82410.1| putative flagella basal body P-ring formation protein
           [Blastopirellula marina DSM 3645]
          Length = 287

 Score = 37.8 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 39/149 (26%), Gaps = 7/149 (4%)

Query: 48  VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107
           V+ +   +  G V+    L             F   +      + +  +  + PI  G  
Sbjct: 140 VVHTVRPIRRGEVIQAEDLTVQPLNTVRTDGDFETRIESLVGKEAIRSLPAQRPIESGSI 199

Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV 167
                +       + + +        + I   +         D + V  +   S+R    
Sbjct: 200 REPVVIQQNDVVTVIAQIGG------LVIRRDAIAASDASVGDLLMVQAISPDSKRGQQR 253

Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGSTAT 196
             +   +R       +  +      +T T
Sbjct: 254 GEMFQ-VRAYGPGQAMTINSDQRRAATVT 281


>gi|91776305|ref|YP_546061.1| flageller protein FlgA [Methylobacillus flagellatus KT]
 gi|91710292|gb|ABE50220.1| flagellar protein FlgA [Methylobacillus flagellatus KT]
          Length = 235

 Score = 37.8 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 31/117 (26%), Gaps = 6/117 (5%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  N       L++   LA G ++T   L         +  G   D        +  G  
Sbjct: 103 VQANVQVMAEYLVAAAPLAQGHIITEQDLAKSHGDLAKLPPGVFTDAS------QAIGRA 156

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           V VP+  G  +R E L           +          +S              V V
Sbjct: 157 VYVPLSAGTVLRQEMLRVLPVVQQGQKVILNTMGEGFKVSAEGTALTSAGDGQRVKV 213


>gi|163794153|ref|ZP_02188126.1| flagellar biosynthesis protein R [alpha proteobacterium BAL199]
 gi|159180767|gb|EDP65286.1| flagellar biosynthesis protein R [alpha proteobacterium BAL199]
          Length = 324

 Score = 37.8 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88
           P    T  V++      ++V + +     G V++ N ++W+           +       
Sbjct: 175 PGSQATPVVVSGRVEPMLSVPVLRNHAMPGEVISENDIQWLRVESRRASMNSVTR----- 229

Query: 89  AMQELDGVLVRVPILKGDPIRLEKL 113
            +++L G   R PI  G PIRL  +
Sbjct: 230 -LEDLLGRTPRRPIAAGQPIRLTDV 253


>gi|27379567|ref|NP_771096.1| efflux system protein [Bradyrhizobium japonicum USDA 110]
 gi|27352719|dbj|BAC49721.1| blr4456 [Bradyrhizobium japonicum USDA 110]
          Length = 461

 Score = 37.8 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 23/199 (11%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRL-VSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           K +R   I+     A++ G+  +   V     Q      + P   + VL +         
Sbjct: 18  KSSRGGFILTLVTLAILGGLGYLGWTVWHQQPQQANGRNQRPDLPVPVLAAT-------- 69

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
                      P      G I  ++      ++DG L+ V   +G  ++   +V   +  
Sbjct: 70  -----PRIQDVPVYLDGVGAIRALNTVTVRSQVDGKLIAVNFTEGQDVKKGDVVGEIDPA 124

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV--VMVRSLSERKPTVTVVLSNIRVIA 178
           L         A         A       N  +D+      + S              V  
Sbjct: 125 LYQATYDQAVA-------KKAQDQAQLANQRIDLTRYEQLAASNAGSKQQADTQRALVAQ 177

Query: 179 IDHNIDSDERVLVGSTATL 197
            +  + +D+  +  + ATL
Sbjct: 178 TEALVKADQAAIDNAAATL 196


>gi|91976160|ref|YP_568819.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Rhodopseudomonas palustris BisB5]
 gi|91682616|gb|ABE38918.1| Flageller protein FlgA [Rhodopseudomonas palustris BisB5]
          Length = 366

 Score = 37.8 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 7/166 (4%)

Query: 28  SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87
           +  +V     +T    + +  ++    +    V+  + +     P+  V    I      
Sbjct: 187 AAGNVPVRLRVTGTAVETLATVVLTRPVERNEVIKISDVAIERRPKAEVASDAIAR---- 242

Query: 88  NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147
                + G+  R  +  G  +R   L           +    +AA + ++          
Sbjct: 243 ---DAVIGMQARRALRSGQIVRSTDLAKPDLVTRDQGVTLIYQAAGIYLTSRGKALETGT 299

Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGS 193
             D V+V+ ++S      TV      +  +A+   + S +     S
Sbjct: 300 EGDVVNVLNLQSKRTVSATVVGRGQVMVTVAVPRILASAQPATAPS 345


>gi|294140178|ref|YP_003556156.1| flagellar basal-body P-ring formation protein FlgA [Shewanella
           violacea DSS12]
 gi|293326647|dbj|BAJ01378.1| flagellar basal-body P-ring formation protein FlgA, putative
           [Shewanella violacea DSS12]
          Length = 234

 Score = 37.8 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 18/137 (13%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V++++  L  G ++    +           +  +    Q N + E+ G  V+       
Sbjct: 113 PVVVARQTLGPGDLIAKGDIVIKYV------EQTLLRGQQFNNLAEVVGTRVKRRTPANQ 166

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           PI    L     G   S+  +      +     +   G +   D + +    S       
Sbjct: 167 PIFSNNLCFVCKGDSVSIFARTD-NFEIKTVGEALQDGNL--GDRIRIKNTYSHKT---- 219

Query: 167 VTVVLSNIRVIAIDHNI 183
                 + RVI +    
Sbjct: 220 -----VDARVIDVGKVE 231


>gi|212634342|ref|YP_002310867.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           piezotolerans WP3]
 gi|212555826|gb|ACJ28280.1| Flagellar basal-body P-ring formation protein FlgA [Shewanella
           piezotolerans WP3]
          Length = 237

 Score = 37.8 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 45/137 (32%), Gaps = 18/137 (13%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++K  L  G +++ + +E     +  +         Q + + ++ G  ++  +    
Sbjct: 116 PVVVAKSTLGPGDLLSSSDVEIDYVEQTTL------RGQQFDQVDQVVGARLKRRVAPQQ 169

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           PI    L     G   S+  + +    +     +   G +   D + +    S       
Sbjct: 170 PIFNNHLCIVCKGDTVSIFARSE-NFEIKTVGEALHDGNL--GDKIRIKNTHSQKTL--- 223

Query: 167 VTVVLSNIRVIAIDHNI 183
                 N +V A+    
Sbjct: 224 ------NAKVTAVGQVE 234


>gi|148656324|ref|YP_001276529.1| SAF domain-containing protein [Roseiflexus sp. RS-1]
 gi|148568434|gb|ABQ90579.1| SAF domain [Roseiflexus sp. RS-1]
          Length = 304

 Score = 37.8 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 36/224 (16%)

Query: 6   LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65
           ++ ++V  + +L A                            V+I+  D+     +T + 
Sbjct: 23  MLLLIVGIMTSLAAAAYGYIESRR---------------TERVVIAARDIPYAAQITVDD 67

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
           L  +  P           V      Q + G      I   D +    L            
Sbjct: 68  LAVIELPLHRP-----VQVAGITDPQAVIGQYATRQIGMNDLLNPGMLAASPPDEPVYPN 122

Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVR------SLSERKPTVTVVLSN---IRV 176
            +      +    +    G +   D +++  +               +  +L     + V
Sbjct: 123 GRKLERNMVPAPFALTGVGPVTDRDRLNIGFIASDPSLCDRERADVPLGTILDAPATLLV 182

Query: 177 IAIDHNIDSDERVLV-------GSTATLELTPMQAKALVAAQSV 213
           ++      +   +         G  A LE+TP QA AL A Q+ 
Sbjct: 183 MSEGSRSYACRWMSGIPILYIEGEIAYLEMTPAQAHALRALQAA 226


>gi|189016770|ref|YP_001711809.1| hypothetical protein CMS_pCSL0080 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|167728941|emb|CAQ03323.1| hypothetical protein pCSL0080 [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 231

 Score = 37.4 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 70/211 (33%), Gaps = 26/211 (12%)

Query: 10  VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69
            ++ + A   G + +   + +  Q              V +S  D+A G +++   L  +
Sbjct: 42  AIALIVAGALGGVFIYSSNSNSQQ--------------VFVSSRDIARGQIISQTDLGTL 87

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
                 +  G            ++ G    V +  G  +    +        +  +P GK
Sbjct: 88  D-----ISQGQNTQGIPVADAADVIGQTATVDLPAGSLVTSSSVAP------ALSVPDGK 136

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189
               + +  +      +  +DHV +V V + +    T  V   +  V A D +  + +  
Sbjct: 137 ALVGLTLKRTQLPAQALVADDHVAIVPVAADAAAAATGAVTSGSSAV-AGDVSATARDEA 195

Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
               T  + +    A  L +  +   +++ L
Sbjct: 196 ADTITVDVYVPATAAADLTSRAAAGAVAIYL 226


>gi|238927616|ref|ZP_04659376.1| SAF domain protein [Selenomonas flueggei ATCC 43531]
 gi|238884541|gb|EEQ48179.1| SAF domain protein [Selenomonas flueggei ATCC 43531]
          Length = 254

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 8/102 (7%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            VL++  D+ +   +TP          + + +  + D         L G +    I KG 
Sbjct: 130 RVLVAMTDIRMDEAITPANAHIEESSVDTLPETTVTD------FSRLAGRVAGRYIRKGM 183

Query: 107 PIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMI 146
            I    L      + G    L       T+     +   G I
Sbjct: 184 VIAPPLLAMPRVVSAGSPVELVAESGGITIRAEGVALEAGRI 225


>gi|170781110|ref|YP_001709442.1| putative secreted protein [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155678|emb|CAQ00798.1| putative secreted protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 212

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 57/188 (30%), Gaps = 22/188 (11%)

Query: 44  KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103
             + V+ +   L  G  V  + L  V    +   D ++       +    DG++V   + 
Sbjct: 44  SSVVVMAAASALDAGTTVHASDLVPVRVRIDGAADHYV-------SPDSADGLVVTRFVG 96

Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160
            G+ +    L        +          ++ I  S+    ++ P   VD+       S 
Sbjct: 97  AGELVPRSSLSSADARTTA----------SVVIPTSAGADHLVAPGTVVDIWAAAVKGSG 146

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220
           +       V++S   V  +             +   L +      A++A+       + L
Sbjct: 147 TNAYDAPRVIVSGATVAQVIRPEGFVADQDH-TQVQLTVPREDVAAVLASTDAGD-QMSL 204

Query: 221 RSIADLNP 228
             + D   
Sbjct: 205 VPVGDAGA 212


>gi|77919673|ref|YP_357488.1| nucleoside phosphorylase [Pelobacter carbinolicus DSM 2380]
 gi|77545756|gb|ABA89318.1| nucleoside phosphorylase, putative [Pelobacter carbinolicus DSM
           2380]
          Length = 258

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
             + +   ++ ++  I   ER        L +    A     A    +L  VLR+I D  
Sbjct: 132 RTLTTAAPLLNVEQKIFWRERRKA-----LAVDMESAAVARVASEAGRLFFVLRAICDEA 186

Query: 228 --PSSSEDSDVWDVQEEGKEIQIIK 250
             P S+   D+ D     + +++++
Sbjct: 187 ARPVSAALFDLVDEFGRPRPLRLVR 211


>gi|332186227|ref|ZP_08387972.1| response regulator [Sphingomonas sp. S17]
 gi|332013595|gb|EGI55655.1| response regulator [Sphingomonas sp. S17]
          Length = 396

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 74/235 (31%), Gaps = 13/235 (5%)

Query: 11  VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI-NVLISKGDLAVGMVVTPNILEWV 69
           ++    + AG     L     ++    +       + NV ++    +   +V   +    
Sbjct: 125 IAAPVRVAAGGSGGILGESAAIREVRALVRRVGPTVANVCVTGRSGSGRTLVAHALHAVS 184

Query: 70  AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129
                 +    + D  Q   + ++ G ++            ++L       L   L  G 
Sbjct: 185 MDGGGTLPRIDLRDPEQWELLNDVSGTVLLR--------HPDRLDAVTQARLLDRLTPGL 236

Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189
           R  ++   ++     + +    +D+  V  L+ R+    ++  +   +A +       R+
Sbjct: 237 RCISIADGLAPLSAPLHRRLCTIDI-AVPPLAARRDDAVILARHFAALAGETYGHMQVRI 295

Query: 190 LVGSTATLELT--PMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242
              + A + +T  P + + L AA   A L L    + D               + 
Sbjct: 296 TPAAEAIIAVTDWPDEVRGLAAAIERAVL-LSDDGVVDAAAIRPAGGASARPDDG 349


>gi|20560097|gb|AAM27839.1|AF498418_13 ORF_13; similar to NeuB family [Pseudomonas aeruginosa]
 gi|20560120|gb|AAM27859.1|AF498419_13 ORF_13; similar to NeuB family [Pseudomonas aeruginosa]
          Length = 351

 Score = 37.4 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 10/65 (15%)

Query: 51  SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110
           +  D+  G  +T   +  V  P   +               E+ G    V I    PI  
Sbjct: 296 AIRDIEAGEPLTAENIRSVR-PGYGLSPKHYT---------EVLGKTAAVKIPAHTPIHW 345

Query: 111 EKLVD 115
           EKL D
Sbjct: 346 EKLSD 350


>gi|300743849|ref|ZP_07072869.1| putative N-acetyl neuramic acid synthetase NeuB [Rothia
           dentocariosa M567]
 gi|300380210|gb|EFJ76773.1| putative N-acetyl neuramic acid synthetase NeuB [Rothia
           dentocariosa M567]
          Length = 747

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++   +A G V+T   +   + P   +   ++          +L G  ++  + +G   
Sbjct: 405 LVATRSIAKGEVITEADVTVKS-PGRGLQPNYL---------PQLLGRTIQRDVEEGSFF 454

Query: 109 RLEKL 113
               L
Sbjct: 455 FEGDL 459


>gi|222523711|ref|YP_002568181.1| hypothetical protein Chy400_0417 [Chloroflexus sp. Y-400-fl]
 gi|222447590|gb|ACM51856.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
          Length = 1250

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 56/197 (28%), Gaps = 4/197 (2%)

Query: 52   KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
               + + + +       +  P  +     +         Q L   +  +P+L   P+   
Sbjct: 943  TRQITITLTLPTGTHPSIQVPITDTTTLSLTAPAMSAITQTLRTEVQALPVLAASPLTGA 1002

Query: 112  KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171
              V   +  +           T+ I IS+    ++  + +   V+  S++      T + 
Sbjct: 1003 ATVLPSDSYIYRHQITNNGNVTVPIDISATTADLVGLDTYNTTVLTPSVTLAPGASTEIA 1062

Query: 172  SNIRVIAIDHNIDSDERVLVGSTATLELTP---MQAKALVAAQSVA-KLSLVLRSIADLN 227
              I V             +  +T           QA  +    +V  + +  LRS  + +
Sbjct: 1063 VRITVPTGAQTTTPSGNPVRATTVITATPRGFGSQAITMTDTTTVGLRYAAELRSSYEQD 1122

Query: 228  PSSSEDSDVWDVQEEGK 244
              +  +           
Sbjct: 1123 VRAGREVVFLHTLRNTS 1139


>gi|154685362|ref|YP_001420523.1| YhbJ [Bacillus amyloliquefaciens FZB42]
 gi|154351213|gb|ABS73292.1| YhbJ [Bacillus amyloliquefaciens FZB42]
          Length = 221

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 27/169 (15%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53
           M   RL+    I +  V A++ G       S H+V+T+E         I    +      
Sbjct: 12  MNRGRLILTNIIGLIVVLAIIGGGAYYYYQSTHYVKTDEAKVAGDMAAITAPAAGKVTDW 71

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           +L  G  V+ N +              I      +    +DG +V+  +  G  +     
Sbjct: 72  NLDEGKEVSKNDVVAK-----------IKGQQNADVKAIMDGTIVKNEVKNGQMV----- 115

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
                 G +       +   +  +I       I+  + VDV++    + 
Sbjct: 116 ----QAGTTIAQEIDMKHLYITANIKETDIRDIEVGNKVDVIVDGDPNT 160


>gi|119871747|ref|YP_929754.1| periplasmic binding protein [Pyrobaculum islandicum DSM 4184]
 gi|119673155|gb|ABL87411.1| periplasmic binding protein [Pyrobaculum islandicum DSM 4184]
          Length = 723

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 6/49 (12%), Positives = 18/49 (36%)

Query: 1  MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL 49
          M    ++G++++ + A+ A  +A                      ++V+
Sbjct: 1  MNTRVVIGVLLAVILAVFALYLAKSPTGGGVSNATAPPRAAGPSPVSVV 49


>gi|33573139|emb|CAE36786.1| flagella basal body P-ring formation protein [Bordetella
           parapertussis]
          Length = 291

 Score = 37.4 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 6/108 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
              ++   +A G  +    L         +  G I D         + G+     I  G 
Sbjct: 168 QYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDAA------AILGMRPAHRIAAGQ 221

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           PI+   L    +      +    R     +S          P+  V V
Sbjct: 222 PIKGAGLRSAESVSRGQSVRITARGNGFVVSSEGQALDNAPPSATVQV 269


>gi|311280021|ref|YP_003942252.1| flagella basal body P-ring formation protein FlgA [Enterobacter
           cloacae SCF1]
 gi|308749216|gb|ADO48968.1| flagella basal body P-ring formation protein FlgA [Enterobacter
           cloacae SCF1]
          Length = 219

 Score = 37.4 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/102 (9%), Positives = 29/102 (28%), Gaps = 6/102 (5%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71
           +   A    +     V       +  +        + +++   +A G  +    +     
Sbjct: 61  ALSVAGFGRLWGNVNVLAQCGTDKRYLQVVVEATGDYVVAAQAIARGATLQAESVTLKRG 120

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
             + +    + D        +  G +    +  G P++L  L
Sbjct: 121 RLDQLPPKTMLDPA------QAQGAVSLRDLAPGQPVQLSML 156


>gi|254500840|ref|ZP_05112991.1| flagella basal body P-ring formation protein FlgA [Labrenzia
           alexandrii DFL-11]
 gi|222436911|gb|EEE43590.1| flagella basal body P-ring formation protein FlgA [Labrenzia
           alexandrii DFL-11]
          Length = 152

 Score = 37.4 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
                 A  I + +++  +  G  +    L    FP        +      +   +L G 
Sbjct: 17  AAPSAFAASIELPVARQTIPAGSEIGHRDLVERKFPSRTATQFAV-----ASHRSQLVGQ 71

Query: 97  LVRVPILKGDPIRLEKLVDR 116
           + R  +L G PI +  +   
Sbjct: 72  VTRRTLLPGQPIPINSVEQP 91


>gi|163850064|ref|YP_001638107.1| FlgA, flagellar basal-body P-ring formation protein
           [Methylobacterium extorquens PA1]
 gi|240137198|ref|YP_002961667.1| Flagella basal body p ring formation protein FlgA [Methylobacterium
           extorquens AM1]
 gi|254559210|ref|YP_003066305.1| flagella basal body p ring formation protein FlgA [Methylobacterium
           extorquens DM4]
 gi|163661669|gb|ABY29036.1| FlgA, flagellar basal-body P-ring formation protein
           [Methylobacterium extorquens PA1]
 gi|240007164|gb|ACS38390.1| Flagella basal body p ring formation protein FlgA [Methylobacterium
           extorquens AM1]
 gi|254266488|emb|CAX22252.1| Flagella basal body p ring formation protein FlgA [Methylobacterium
           extorquens DM4]
          Length = 164

 Score = 37.4 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 5/100 (5%)

Query: 18  VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77
              + A+   S   +   + +       + + +    +  G  +  ++L   A+P     
Sbjct: 9   GLVLAALAAGSAQPIAPAQAVEGMANAELMLPVPTVTIYPGDTIKESMLRMQAYPATYRA 68

Query: 78  DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
              + D     A   + G + R  +L G+P+ +  + D  
Sbjct: 69  RTAVID-----ASAAIAGRVARRMLLPGEPVPVNAVDDPR 103


>gi|291617016|ref|YP_003519758.1| FlgA [Pantoea ananatis LMG 20103]
 gi|291152046|gb|ADD76630.1| FlgA [Pantoea ananatis LMG 20103]
          Length = 219

 Score = 37.4 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 6/90 (6%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           V+ +  +    I        + L++   +A G  V+           +N+          
Sbjct: 76  VAANCGENRRYIQVQVQVTGDYLVATKLIARGSTVSKEDFRIENGRLDNLPP------RT 129

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
               + +   +V   I  G P+    L   
Sbjct: 130 LFTDESVADSVVLRDIQPGQPVSQSMLRQP 159


>gi|119715450|ref|YP_922415.1| putative signal peptide [Nocardioides sp. JS614]
 gi|119536111|gb|ABL80728.1| conserved hypothetical protein; putative signal peptide
           [Nocardioides sp. JS614]
          Length = 224

 Score = 37.4 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 47/186 (25%), Gaps = 13/186 (6%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           +    L+    V     +       ++V    GD   G  +    L        +  D  
Sbjct: 33  LWVGVLIVAVSVVAGARLLAAADDTVSVWAVSGDAGPGAELDAGDLVAHRVRFADAEDLG 92

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
                      +L    +   +  G+ +    L    +G  +  LP    A         
Sbjct: 93  RYFTLDDELPADLR---LVRGVTAGELLPRSALGAADDGADTVELP---VAV-----DVE 141

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELT 200
            V   ++    VDV +V      +      L+   V+       +           L + 
Sbjct: 142 LVPPSVRAGSVVDVYLVGR--GNRDHTGPALAGATVVDAPGIDTTFGSASGHRQLVLAVP 199

Query: 201 PMQAKA 206
              A A
Sbjct: 200 QADAAA 205


>gi|256393466|ref|YP_003115030.1| glycoside hydrolase family 3 domain-containing protein [Catenulispora
            acidiphila DSM 44928]
 gi|256359692|gb|ACU73189.1| glycoside hydrolase family 3 domain protein [Catenulispora acidiphila
            DSM 44928]
          Length = 1343

 Score = 37.4 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 46/193 (23%), Gaps = 7/193 (3%)

Query: 67   EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126
              +      V       V  P  +Q    V     I   +           +       P
Sbjct: 899  ATINVTVNGVTGTAPIVVRDPFTLQAPAIVKPATSITATETFTNSGDKAVRDVRFGLTTP 958

Query: 127  KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186
             G  A     + S      + P   V      ++       T    +             
Sbjct: 959  SGWTA----TANSPVSVSSVAPGQTVTARWSVAVPATASPGTQTELDATTTLTGAAGSYT 1014

Query: 187  ERVLVGSTATLELTPMQAKALVAAQS--VAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244
            E  +   T T   TP QA  ++   S     L +VL + +D   S +             
Sbjct: 1015 ENSVSAVTVTSGATPQQATPVITGTSPAAGSLQVVLNNPSDTATSVTAVKWQLGSLSGTA 1074

Query: 245  EIQI-IKAGVIVN 256
             +   I AG    
Sbjct: 1075 PVSATIAAGASTT 1087


>gi|254381329|ref|ZP_04996694.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194340239|gb|EDX21205.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 231

 Score = 37.4 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 11/123 (8%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
               + I VL+   D+  G  +T   L   +   +                    G    
Sbjct: 53  TASGQRIAVLVVARDVPAGAPITDADLTTASLALDPA-----VKAVPAAKKSGTVGQRAA 107

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           V +  G  +   ++         SL+  G++   + +  S      + P   V +V    
Sbjct: 108 VALKAGALLSPSQVTSV------SLVKPGEQLVGVALKPSQLPASRLAPGQRVLIVSTPD 161

Query: 160 LSE 162
            ++
Sbjct: 162 AAQ 164


>gi|310796524|gb|EFQ31985.1| inositol monophosphatase [Glomerella graminicola M1.001]
          Length = 326

 Score = 37.4 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 22/59 (37%)

Query: 189 VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247
              G   T+   P     +  A+   +L L +R  A     ++  +    V+E  K ++
Sbjct: 259 EEAGGLVTVANPPEDTSIIPEAKLGGRLYLAIRPAAATETETARQAQERVVRETWKRVR 317


>gi|167623355|ref|YP_001673649.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           halifaxensis HAW-EB4]
 gi|167353377|gb|ABZ75990.1| SAF domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 257

 Score = 37.0 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 18/137 (13%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++K  +  G +++   +E     +  +        HQ   + E+ G  ++  +  G 
Sbjct: 136 PVVVAKSTMGPGDLLSRGDIELEYIEQTTL------RGHQFEEISEVVGARLKRRVAPGQ 189

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166
           PI   +L     G   S+  + +     +I             D V +    S       
Sbjct: 190 PIFANQLCIVCKGDSVSIYARSE---NFEIKTVGEALHDANVGDKVRIKNSHSHKNL--- 243

Query: 167 VTVVLSNIRVIAIDHNI 183
                 + RV  +    
Sbjct: 244 ------DARVTGVGQVE 254


>gi|153947896|ref|YP_001401294.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959391|gb|ABS46852.1| flagella basal body P-ring formation protein FlgA [Yersinia
           pseudotuberculosis IP 31758]
          Length = 232

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   L  G  ++   ++      + +  G + D H         G + +  I  G P+ 
Sbjct: 112 VAVRRLVAGEKISAQDIQMKQGRLDTLPPGALLDAHFAQ------GAVSQRQINAGQPLT 165

Query: 110 LEKL 113
              L
Sbjct: 166 RNML 169


>gi|257140552|ref|ZP_05588814.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           thailandensis E264]
 gi|284159417|ref|YP_440797.3| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           thailandensis E264]
 gi|83652486|gb|ABC36549.1| FlgA family protein [Burkholderia thailandensis E264]
          Length = 538

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 407 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTMLPLAVITD------AQQAVGATA 460

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 461 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGHGFTISTEGSVLNNAAPGQQVRV 516


>gi|72122783|gb|AAZ64969.1| Flageller protein FlgA [Ralstonia eutropha JMP134]
          Length = 290

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 26/124 (20%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
            ++   L  G  VTP  LE        +    I D        ++ G +    +  G P+
Sbjct: 170 YVAVRALGPGEPVTPADLEVRQGDLSTLPKAVITDPS------QVVGAVTANRVAAGSPM 223

Query: 109 RLEKL------------VDRGNGGLSSLLPKGKRA--------ATMDISISSAVGGMIKP 148
           R + L                 G    +  +GK            + +     V G+++ 
Sbjct: 224 RTDLLKKSIAVRSGQTVTVAVEGDAFQITSEGKVLADAAIGNSVQIRLRNGQVVSGLVRS 283

Query: 149 NDHV 152
            D V
Sbjct: 284 GDTV 287


>gi|33592475|ref|NP_880119.1| flagellar basal body P-ring biosynthesis protein FlgA [Bordetella
           pertussis Tohama I]
 gi|33572121|emb|CAE41663.1| flagella basal body P-ring formation protein [Bordetella pertussis
           Tohama I]
 gi|332381892|gb|AEE66739.1| flagellar basal body P-ring biosynthesis protein FlgA [Bordetella
           pertussis CS]
          Length = 236

 Score = 37.0 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 28/108 (25%), Gaps = 6/108 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
              ++   +A G  +    L         +  G I D         + G+     I  G 
Sbjct: 113 QYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDAA------AILGMRPAHRIAAGQ 166

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           PI+   L    +      +    R     +S          P   V V
Sbjct: 167 PIKGAGLRSAESVSRGQSVRITARGNGFVVSSEGQALDNAPPGATVQV 214


>gi|328910928|gb|AEB62524.1| Putative efflux system component yhbJ [Bacillus amyloliquefaciens
           LL3]
          Length = 221

 Score = 37.0 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 27/169 (15%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53
           M   RL+    I +  V A++ G       S H+V+T+E         I    +      
Sbjct: 12  MNRGRLILTNIIGLIVVLAIIGGGAYYYYQSTHYVKTDEAKVAGDMAAITAPAAGKVTDW 71

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           +L  G  V+ N +              I      +    +DG +V+  +  G  +     
Sbjct: 72  NLDEGKEVSKNDVVAK-----------IKGQQNADVKAIMDGTIVKNQVKNGQMV----- 115

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
                 G +       +   +  +I       I+  + VDVV+    + 
Sbjct: 116 ----QAGTTIAQEIDMKHLYITANIKETDIKDIEVGNKVDVVVDGDPNT 160


>gi|300716214|ref|YP_003741017.1| flagellar biosynthesis, assembly of basal-body periplasmic P ring
           [Erwinia billingiae Eb661]
 gi|299062050|emb|CAX59166.1| Flagellar biosynthesis, assembly of basal-body periplasmic P ring
           [Erwinia billingiae Eb661]
          Length = 222

 Score = 37.0 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           V+ +  Q    I        + L++   +  G  +T + ++      + +    +     
Sbjct: 79  VAANCDQNRRYIQVQVQVTGDYLVAARQVIRGGTLTADDVKIQRGRLDTLPARTV----- 133

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
             + +E+   +    I+ G P+    +   
Sbjct: 134 -MSAEEVTDAVALRDIIPGQPLTQMMVRQP 162


>gi|20559814|gb|AAM27589.1|AF498403_8 ORF_8; similar to NeuB family [Pseudomonas aeruginosa]
          Length = 361

 Score = 37.0 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 11/82 (13%)

Query: 25  RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84
            L SP+            A    V ++  D+  GM++T + L                  
Sbjct: 287 ALGSPYKAPQPSEWDTRQAARQQV-VAARDIEAGMIITRDDLTTARSGHGLPP------- 338

Query: 85  HQPNAMQELDGVLVRVPILKGD 106
               ++ EL G   +   L G+
Sbjct: 339 ---TSLWELVGSTSKRAFLAGE 357


>gi|163845986|ref|YP_001634030.1| hypothetical protein Caur_0391 [Chloroflexus aurantiacus J-10-fl]
 gi|163667275|gb|ABY33641.1| hypothetical protein Caur_0391 [Chloroflexus aurantiacus J-10-fl]
          Length = 1093

 Score = 37.0 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 56/197 (28%), Gaps = 4/197 (2%)

Query: 52  KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
              + + + +       +  P  +     +         Q L   +  +P+L   P+   
Sbjct: 786 TRQITITLTLPTGTHPSIQVPITDTTTLSLTAPAMSAITQTLRTEVQALPVLAASPLTGA 845

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171
             V   +  +           T+ I IS+    ++  + +   V+  S++      T + 
Sbjct: 846 ATVLPSDSYIYRHQITNNGNVTVPIDISATTADLVGLDTYNTTVLTPSVTLAPGASTEIA 905

Query: 172 SNIRVIAIDHNIDSDERVLVGSTATLELTP---MQAKALVAAQSVA-KLSLVLRSIADLN 227
             I V             +  +T           QA  +    +V  + +  LRS  + +
Sbjct: 906 VRITVPTGAQTTTPSGNPVRATTVITATPRGFGSQAITMTDTTTVGLRYAAELRSSYEQD 965

Query: 228 PSSSEDSDVWDVQEEGK 244
             +  +           
Sbjct: 966 VRAGREVVFLHTLRNTS 982


>gi|33601537|ref|NP_889097.1| flagellar basal body P-ring biosynthesis protein FlgA [Bordetella
           bronchiseptica RB50]
 gi|33575973|emb|CAE33052.1| flagella basal body P-ring formation protein [Bordetella
           bronchiseptica RB50]
          Length = 236

 Score = 37.0 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 28/108 (25%), Gaps = 6/108 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
              ++   +A G  +    L         +  G I D         + G+     I  G 
Sbjct: 113 QYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDAA------AILGMRPAHRIAAGQ 166

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           PI+   L    +      +    R     +S          P   V V
Sbjct: 167 PIKGAGLRSAESVSRGQSVRITARGNGFVVSSEGQALDNAPPGATVQV 214


>gi|310816832|ref|YP_003964796.1| flagella basal body P-ring formation protein FlgA
           [Ketogulonicigenium vulgare Y25]
 gi|308755567|gb|ADO43496.1| flagella basal body P-ring formation protein FlgA
           [Ketogulonicigenium vulgare Y25]
          Length = 138

 Score = 37.0 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 43  AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
               + ++++ +L    ++T ++L            G I D        E+ G+  R PI
Sbjct: 14  TAQADYVVAQRNLPANGIITADLLGLRP----GEVPGAITDPS------EIIGLEARTPI 63

Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
             G P++  +         + ++        + I           P D + V+
Sbjct: 64  YAGRPLQASQFGQPAIVQRNQVIAMQFTRGALTIMAEGRALERAGPGDLIRVM 116


>gi|291613034|ref|YP_003523191.1| flagella basal body P-ring formation protein FlgA [Sideroxydans
           lithotrophicus ES-1]
 gi|291583146|gb|ADE10804.1| flagella basal body P-ring formation protein FlgA [Sideroxydans
           lithotrophicus ES-1]
          Length = 238

 Score = 37.0 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +  +    +++L++   LA   V++ +              G +         Q+  G  
Sbjct: 107 VQADIKVTVDMLVASRPLAQNTVLSASDFRLQN--------GELGQPGILIDPQQAIGKT 158

Query: 98  VRVPILKGDPIRLEKLVDRG 117
           +R PI  G  +R + L    
Sbjct: 159 LRFPIGAGQVLRQDMLRAPY 178


>gi|170024651|ref|YP_001721156.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia
           pseudotuberculosis YPIII]
 gi|169751185|gb|ACA68703.1| flagella basal body P-ring formation protein FlgA [Yersinia
           pseudotuberculosis YPIII]
          Length = 269

 Score = 37.0 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   L  G  ++   ++      + +  G + D H         G + +  I  G P+ 
Sbjct: 149 VAVRRLVAGEKISAQDIQMKQGRLDTLPPGALLDAHFAQ------GAVSQRQINAGQPLT 202

Query: 110 LEKL 113
              L
Sbjct: 203 RNML 206


>gi|59889777|emb|CAH19132.1| Lateral flagellar P-ring addition protein (FlgA-like) [Escherichia
           coli]
 gi|284920041|emb|CBG33097.1| lateral flagellar P-ring addition protein (FlgA-like) [Escherichia
           coli 042]
          Length = 245

 Score = 37.0 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 9/145 (6%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +   P   + V+++K  +A    +T N +E   +                  + +  G+ 
Sbjct: 110 VAVRPDVLVPVVMAKSLVARDTPLTANDVELKPYNVSA------QRREVLMELDDAIGLS 163

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
            +  +  G PI  E+LV     G    +    ++A +  S+        +  + V V   
Sbjct: 164 SKHALQPGKPITKEELVSPVLVGRDQPVMIVYQSAGITASMPGVALKNGRKGEMVKV--- 220

Query: 158 RSLSERKPTVTVVLSNIRVIAIDHN 182
           R+ S ++    +V  +  V  +   
Sbjct: 221 RNASSQRVISAMVAESGVVTTVGAE 245


>gi|144899766|emb|CAM76630.1| NeuB [Magnetospirillum gryphiswaldense MSR-1]
          Length = 337

 Score = 37.0 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 10/92 (10%)

Query: 22  IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81
           +    +     +      +  A     L +  D+A G +++ + +              I
Sbjct: 256 LVSAAMGDGTKRILPTEEKWRAAARKSLYAARDIAAGQIISDDDIAIRR------PADGI 309

Query: 82  DDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
                P+ +  + G   R  I  G  I  + +
Sbjct: 310 H----PHHLDLVIGRTARQAIACGALISWDMV 337


>gi|238758114|ref|ZP_04619294.1| Flagella basal body P-ring formation protein flgA [Yersinia aldovae
           ATCC 35236]
 gi|238703652|gb|EEP96189.1| Flagella basal body P-ring formation protein flgA [Yersinia aldovae
           ATCC 35236]
          Length = 226

 Score = 37.0 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 50  ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109
           ++   LA G  ++   +E      + +  G + D H         G +    I  G P+ 
Sbjct: 106 VATRRLAAGEKISMPDIEMKQGRLDTLPPGALLDTHFAQ------GAVSLRQINAGQPLT 159

Query: 110 LEKL 113
              L
Sbjct: 160 RNML 163


>gi|254251187|ref|ZP_04944505.1| Flagellar basal body P-ring biosynthesis protein [Burkholderia
           dolosa AUO158]
 gi|124893796|gb|EAY67676.1| Flagellar basal body P-ring biosynthesis protein [Burkholderia
           dolosa AUO158]
          Length = 370

 Score = 37.0 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  ++   L         +    I D        +  G   
Sbjct: 239 QAKVAVQATYYVAARQIAPGEPLSAADLVARDGDLTTLPVAVITDPA------QAVGATA 292

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              I  G P+R + L    +      +      A   IS   +      P   V V
Sbjct: 293 LARISAGLPLRQDMLKSAASVSAGQTVRVVAAGAGFTISAEGSALANAAPGQSVRV 348


>gi|119510456|ref|ZP_01629589.1| hypothetical protein N9414_01682 [Nodularia spumigena CCY9414]
 gi|119464878|gb|EAW45782.1| hypothetical protein N9414_01682 [Nodularia spumigena CCY9414]
          Length = 522

 Score = 37.0 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 15/214 (7%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63
            R   +++  V  +  G    R                 A             +G+ V  
Sbjct: 38  KRSWALILGIVLLIAGGGFGWRWWQNSFAGNAPPGDRAAAGQ----------PMGIPVKL 87

Query: 64  NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123
             +E     + +V  GF++D        E+DG + ++   +GD ++  +++ R     S+
Sbjct: 88  ATVETETIEDSSVIGGFLEDPGSVELKPEIDGRINQILFKEGDRVQKGQVIIRLQ---SA 144

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI 183
                 R A   +  + A    +K     + +       R       L N +  A    I
Sbjct: 145 DTQARLRQAKASLDRTQARLAELKAGTRPEEIA--QAKARLVQAETRLKNAQGGARPEEI 202

Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217
              E  +  + + LEL   + +     ++   +S
Sbjct: 203 AQAEAQIEVAKSDLELAQSRGQRYQQLRTDGAVS 236


>gi|301620086|ref|XP_002939414.1| PREDICTED: leucine-rich repeat-containing protein 4-like [Xenopus
           (Silurana) tropicalis]
          Length = 641

 Score = 37.0 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           MK T+++      V  L A ++ +        Q    +       + ++    D+  G  
Sbjct: 517 MKTTKIIIGCFVAVTLLAAAMLIVFYKLRKRHQQRSTVAAAR--TVEIIQVDEDIPSGSP 574


>gi|310764864|gb|ADP09814.1| Flagella basal body P-ring formation protein FlgA [Erwinia sp.
           Ejp617]
          Length = 234

 Score = 37.0 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
            ++K +L  G ++    +E      ++   G + D++      ++ G      +  G PI
Sbjct: 111 WVAKKNLPAGSILRAEDIESHTGSLDHQPAGILFDIN------QIVGQTTTRALNVGSPI 164

Query: 109 RLEKL 113
              +L
Sbjct: 165 VQNQL 169


>gi|302695743|ref|XP_003037550.1| hypothetical protein SCHCODRAFT_49211 [Schizophyllum commune H4-8]
 gi|300111247|gb|EFJ02648.1| hypothetical protein SCHCODRAFT_49211 [Schizophyllum commune H4-8]
          Length = 580

 Score = 37.0 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 39/129 (30%), Gaps = 12/129 (9%)

Query: 66  LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125
           + +   P        +   ++P  +      +   P+     +    L+      L+S  
Sbjct: 1   MSFAPTPASLPPKHVVYRFNEPKGLP-----VNYHPLNPVQFLLKAALLHPDKLALASPD 55

Query: 126 PKGKRAATMDISIS-------SAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178
                  +  +          + +   I+P D V V+   S         V+ +   V A
Sbjct: 56  GPHPVYYSFAVWAQRVQNLAYALIQARIRPGDRVAVIAPNSPMIADSYFGVLAARAIVCA 115

Query: 179 IDHNIDSDE 187
           ++  +  D+
Sbjct: 116 VNTRLRPDD 124


>gi|293606491|ref|ZP_06688849.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815114|gb|EFF74237.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 116

 Score = 37.0 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232
            L +   Q   L+ A    +L L LR + D     + 
Sbjct: 1   MLAVPVEQINELILASRAGRLQLALRPVGDDAVPDAT 37


>gi|291085566|ref|ZP_06353375.2| flagella basal body P-ring formation protein FlgA [Citrobacter
           youngae ATCC 29220]
 gi|291071317|gb|EFE09426.1| flagella basal body P-ring formation protein FlgA [Citrobacter
           youngae ATCC 29220]
          Length = 267

 Score = 36.6 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71
           +   +  A +     V       +  +  N     N +++   +A G  +TP  +     
Sbjct: 109 ALSVSGNAKLWGNVNVLARCANEKRYLQVNVQATGNYVVAAAPVARGSALTPASVTLKRG 168

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
             + +    + D      + ++   +    ++ G PI+L  L
Sbjct: 169 RLDQLPPRAVLD------LNQVQDAVSLRDLVPGQPIQLSML 204


>gi|77359715|ref|YP_339290.1| flagellar biosynthesis; assembly of basal-body periplasmic P-ring
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874626|emb|CAI85847.1| putative flagellar biosynthesis; assembly of basal-body periplasmic
           P-ring [Pseudoalteromonas haloplanktis TAC125]
          Length = 235

 Score = 36.6 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 35  EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94
            + +     +   V+++  +LA G V+T   L         +       V   +    L 
Sbjct: 102 AQYVHVRVTETAPVVVANVNLARGEVITAAHLSIE------MRSTHFIRVQYLDNPALLI 155

Query: 95  GVLVRVPILKGDPIRLEKL 113
           G   +  I  G P+ L ++
Sbjct: 156 GSRSKRNIRSGMPLLLSQI 174


>gi|163733144|ref|ZP_02140588.1| flagella basal body P-ring formation protein FlgA, putative
           [Roseobacter litoralis Och 149]
 gi|161393679|gb|EDQ18004.1| flagella basal body P-ring formation protein FlgA, putative
           [Roseobacter litoralis Och 149]
          Length = 140

 Score = 36.6 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/109 (10%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V++    +     ++ + +              I + +  + M ++ G   R  +  G 
Sbjct: 20  EVVVPAKTIRANATISASDITLKP----------IKNENAYSLMADVVGQEARTTLYAGR 69

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
           PI  + +        + ++    +++ + I             D V ++
Sbjct: 70  PILFDDVGPPAIVSRNQIVLLSYQSSGLKILTEGRALQRGGVGDRVRIM 118


>gi|269958186|ref|YP_003327974.1| SAF domain protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269306867|gb|ACZ32416.1| SAF domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 234

 Score = 36.6 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 60/188 (31%), Gaps = 24/188 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           KL R   +VV+ V  +  G +            +E           VL  +  +  G V+
Sbjct: 35  KLQRRPVLVVASVATVCLGALVSVWAFQSTSDAQE-----------VLAVRETVVRGQVI 83

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T + L  V    +             +    + G    + ++ G  +  E++ D      
Sbjct: 84  TKDDLMSVRISVDPA-----LHPVATSQSATVVGKRAALDLVAGGVVTAEQVTDTP---- 134

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRVIAI 179
             +   G+    ++++ +      I+  D V +V     +       VT    N  V+ I
Sbjct: 135 --VPADGQSVVGLNLTSAMLPAQQIRVGDKVRIVSTSGQTPGVETDVVTPTTVNAEVVGI 192

Query: 180 DHNIDSDE 187
             +  S  
Sbjct: 193 ASDDTSGN 200


>gi|188534174|ref|YP_001907971.1| Flagellar biosynthesis; assembly of basal-body periplasmic P ring
           [Erwinia tasmaniensis Et1/99]
 gi|188029216|emb|CAO97088.1| Flagellar biosynthesis; assembly of basal-body periplasmic P ring
           [Erwinia tasmaniensis Et1/99]
          Length = 222

 Score = 36.6 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/83 (9%), Positives = 26/83 (31%), Gaps = 6/83 (7%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           V+ +  +    I        + +++   ++ G  ++ + +       + +    +     
Sbjct: 79  VAANCDRNRRYIQVQVQVTGSYVVATRQISQGEAISASDVRMEQGRLDTLPARTLMQP-- 136

Query: 87  PNAMQELDGVLVRVPILKGDPIR 109
                E  G +    I  G P+ 
Sbjct: 137 ----GEAIGAVTLRDITPGQPMT 155


>gi|13472577|ref|NP_104144.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Mesorhizobium loti MAFF303099]
 gi|14023323|dbj|BAB49930.1| flagellar protein; FlgA [Mesorhizobium loti MAFF303099]
          Length = 174

 Score = 36.6 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 19/167 (11%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71
           + + ALV G +        +    ++ +  PA  + VLI    +  G  +    L+ V  
Sbjct: 14  ALILALVTGGVPAFAQESANPSATQIASNQPAGEV-VLIPNRVIYPGETIELAALKQVTL 72

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRGNGGLSSLLP 126
                    +         +EL G + +  +L G  I     R   LV++G       + 
Sbjct: 73  IAGKHKPDAMATHA-----EELQGKIAKRTLLPGRYIPTAAIREAWLVEQGAAVQVFFIA 127

Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173
            G       ++        ++P    D++ VR+    K     V+++
Sbjct: 128 GGLTITATAVT--------LQPGSAGDLIKVRNSDSGKILSGTVMAD 166


>gi|226951711|ref|ZP_03822175.1| RND family efflux transporter MFP subunit [Acinetobacter sp. ATCC
          27244]
 gi|226837501|gb|EEH69884.1| RND family efflux transporter MFP subunit [Acinetobacter sp. ATCC
          27244]
          Length = 393

 Score = 36.6 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 2/99 (2%)

Query: 1  MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL-ISKGDLAVGM 59
          MK  ++  I V+   A+  G++      P     +    + P   + V  +   +L    
Sbjct: 1  MK-KQITVIAVAVGVAISGGLLYTATNKPDAPNPQAAAAQMPVPQVPVAEVITRELNPTA 59

Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
            T  +    +   ++   G I+ V  P       G ++
Sbjct: 60 EYTGYLSAPQSVEIKSRVGGVINSVSVPEGSYVRKGQVL 98


>gi|259907630|ref|YP_002647986.1| Flagella basal body P-ring formation protein FlgA [Erwinia
           pyrifoliae Ep1/96]
 gi|224963252|emb|CAX54736.1| Flagella basal body P-ring formation protein FlgA [Erwinia
           pyrifoliae Ep1/96]
 gi|283477472|emb|CAY73388.1| Flagella basal body P-ring formation protein flgA precursor
           [Erwinia pyrifoliae DSM 12163]
          Length = 234

 Score = 36.6 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
            ++K +L VG V+    +E      ++   G + D++      ++ G      +  G PI
Sbjct: 111 WVAKKNLPVGSVIRAEDIESHTGSLDHQPAGILFDIN------QIVGQTTTRALNVGSPI 164

Query: 109 RLEKL 113
              +L
Sbjct: 165 VQNQL 169


>gi|297538892|ref|YP_003674661.1| flagella basal body P-ring formation protein FlgA [Methylotenera
           sp. 301]
 gi|297258239|gb|ADI30084.1| flagella basal body P-ring formation protein FlgA [Methylotenera
           sp. 301]
          Length = 251

 Score = 36.6 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 6/114 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
             L++   LA G  VT   + + +     +  G   +        +  G  V + +  G 
Sbjct: 128 QYLVAASPLAQGQTVTEQDMMFESGDLTQLPAGVFTEQS------QAIGRTVNISMNAGA 181

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160
            +R E L       L   +    +     +S              V V +    
Sbjct: 182 VLRQELLKVAPVVQLGQTVMVTSKGNGFSVSAEGLSMAKANEGQVVQVKVASGQ 235


>gi|253996323|ref|YP_003048387.1| flagella basal body P-ring formation protein FlgA [Methylotenera
           mobilis JLW8]
 gi|253983002|gb|ACT47860.1| flagella basal body P-ring formation protein FlgA [Methylotenera
           mobilis JLW8]
          Length = 265

 Score = 36.6 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 26/129 (20%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
             L++   LA G VVT + L + +     +  G   D      + +  G +V + +  G 
Sbjct: 142 QYLVAAVPLAQGRVVTADDLLFQSGDLTQLPAGIFTD------LAQAQGRIVNISMTAGT 195

Query: 107 PIRLEKL-----VDRGNGGLSSLLPKGKR---------------AATMDISISSAVGGMI 146
            +R E L     V +G   + +   KG R                  + ++    V G+ 
Sbjct: 196 VLRQEMLKVSPVVQQGQTVMVTSSGKGFRVSAEGKAMTKANEGQVVQVKVASGQVVSGIA 255

Query: 147 KPNDHVDVV 155
           +    V+VV
Sbjct: 256 RQGGQVEVV 264


>gi|311113094|ref|YP_003984316.1| N-acylneuraminate-9-phosphate synthase [Rothia dentocariosa ATCC
           17931]
 gi|310944588|gb|ADP40882.1| N-acylneuraminate-9-phosphate synthase [Rothia dentocariosa ATCC
           17931]
          Length = 747

 Score = 36.6 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L++   +A G V+T   +   + P   +   ++          +L G  ++  + +G   
Sbjct: 405 LVATRGIAKGEVITEADVTVKS-PGRGLQPNYL---------PQLLGRTIQRDVEEGSFF 454

Query: 109 RLEKL 113
               L
Sbjct: 455 FEGDL 459


>gi|167617580|ref|ZP_02386211.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           thailandensis Bt4]
          Length = 212

 Score = 36.6 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 81  QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTMLPLAVITD------AQQAVGATA 134

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 135 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGHGFTISTEGSVLNNAAPGQQVRV 190


>gi|167579483|ref|ZP_02372357.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           thailandensis TXDOH]
          Length = 209

 Score = 36.6 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 78  QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTMLPLAVITD------AQQAVGATA 131

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 132 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGHGFTISTEGSVLNNAAPGQQVRV 187


>gi|300311348|ref|YP_003775440.1| flagellar basal body P-ring formation protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074133|gb|ADJ63532.1| flagellar basal body P-ring formation protein [Herbaspirillum
           seropedicae SmR1]
          Length = 254

 Score = 36.6 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           LI+   LA G  ++ + +  V      +  G I +        ++ G +  + +  G P+
Sbjct: 133 LIAAVPLAQGQTISASDISRVRGDMSALPAGVITEES------QVIGRVAGMSLRAGTPL 186

Query: 109 RLEKL 113
           R++ +
Sbjct: 187 RMDAI 191


>gi|254295425|ref|YP_003061448.1| apolipoprotein N-acyltransferase [Hirschia baltica ATCC 49814]
 gi|254043956|gb|ACT60751.1| apolipoprotein N-acyltransferase [Hirschia baltica ATCC 49814]
          Length = 566

 Score = 36.6 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 9/102 (8%)

Query: 4   TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEE---------VITENPAKFINVLISKGD 54
             +  I+V+ +F    G  + RL                     +E     I  L+ +  
Sbjct: 226 RSVPIILVAVIFGSAWGWGSHRLSDATSQSVGPEVRLVDVGVPQSEKFKPEIRKLVLRRY 285

Query: 55  LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
           L +    T +    V +PE  V    +      + + E  G 
Sbjct: 286 LQLTQPDTGDNPRIVIWPEGAVPYALLQYPDALDPVTETLGA 327


>gi|23016878|ref|ZP_00056630.1| COG2089: Sialic acid synthase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 346

 Score = 36.2 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 33/102 (32%), Gaps = 10/102 (9%)

Query: 12  SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71
                + A      ++     +       N       +++  +LA G ++   +L     
Sbjct: 254 GLAAFVAAIRRVEAMLGDQIKRPTATELANMNGIRRGVVAARNLAAGTILDTTMLVCKR- 312

Query: 72  PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
                  G I    +P  +  L G  +R  + + +P+  + +
Sbjct: 313 -----PGGGI----EPEDLDRLAGFTLRRDLAEDEPLSWDDV 345


>gi|312136591|ref|YP_004003928.1| hypothetical protein Mfer_0364 [Methanothermus fervidus DSM 2088]
 gi|311224310|gb|ADP77166.1| Protein of unknown function DUF515 [Methanothermus fervidus DSM
           2088]
          Length = 425

 Score = 36.2 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 52/185 (28%), Gaps = 28/185 (15%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL------------ 49
           K T +   V++ +   +A +    L    + +  E         +N              
Sbjct: 78  KRTLIGAAVIACIIIFIAVLGYWFLYYQPYQEALESAKAQKIAEVNAYYKGPLATDPRKQ 137

Query: 50  ---------ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100
                     +  ++    V+ P    W  +  + +                 +      
Sbjct: 138 ALLAQIESATTPEEVLAIDVLGPATQSWRTYQLQQIQAKKDMFNRVMIVYSAGNQSTTLQ 197

Query: 101 PILKGDPIR----LEKLVDRGNGGLSSLLP---KGKRAATMDISISSAVGGMIKPNDHVD 153
            I  G+ I      ++ V + +  + S +        A  + I+   A GG+I     VD
Sbjct: 198 TIQGGEVIMRVPDAQRFVSQADASVLSNIEIQTPDTVAIPILINRLQAAGGLIGVGSSVD 257

Query: 154 VVMVR 158
           + +  
Sbjct: 258 IYLTN 262


>gi|291483350|dbj|BAI84425.1| hypothetical protein BSNT_01528 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 221

 Score = 36.2 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53
           M   RL+    I +  V A++AG       S ++V+T+E         I    +      
Sbjct: 12  MNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTNYVKTDEAKVAGDMAAITAPAAGKVSDW 71

Query: 54  DLAVGMVVTPNILE-----WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           DL  G  V                 +++ DG I      N      G  +   I
Sbjct: 72  DLDEGKTVKKGDTVAKIKGEQTVDVKSIMDGTIVKNEVKNGQTVQAGTTIAQTI 125


>gi|322710306|gb|EFZ01881.1| hypothetical protein MAA_03110 [Metarhizium anisopliae ARSEF 23]
          Length = 386

 Score = 36.2 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 62/186 (33%), Gaps = 27/186 (14%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL----ISKGDLA 56
           MKL R++ + V+     +   +   L +          +  P K  +V     ++K  + 
Sbjct: 24  MKLGRVIAVAVAVYLLGLVYFMRDHLPTLPTPPPTPSPSPPPPKSSDVPSSHKVAKVSML 83

Query: 57  VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116
            G             P  ++++  I    +  A      +++R  I  G   +   L+  
Sbjct: 84  YG-------------PRNSLYERAIQSHERHAARWGYPMLVLRQDIAAGFWNKPTYLLTA 130

Query: 117 GNGGLSSLLPKGKR--------AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168
               LS   P  +R        A ++ I+ +      + P D  D+ +V S         
Sbjct: 131 VVNELSK--PADERIEWMMWVDADSIIINPAIPADMFLPPADMPDIHVVASRDHNGLNTG 188

Query: 169 VVLSNI 174
           ++   +
Sbjct: 189 IIFLRV 194


>gi|319405402|emb|CBI79021.1| Flagella basal body P-ring formation protein FlgA [Bartonella sp.
           AR 15-3]
          Length = 152

 Score = 36.2 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 12/141 (8%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAF-PEENVFDGFIDDVHQPNAMQELDGVL 97
           T   A  I+ L+    +  G  ++   L    F  + +    ++ D      M+++   +
Sbjct: 19  TAAYADRISFLVPDKSIYAGQRISDIGLSEKHFFIKSDAASLYVMD------MKQILHKV 72

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
            +  +  G PI L  L D              +A  + I+    V   ++     DV+ V
Sbjct: 73  AKRTLTAGRPISLSSLGDPVLVERGQATKLIFQAHNLQITALGVV---LQSGSSGDVIRV 129

Query: 158 RSLSERKPTVTVVLSN--IRV 176
           R+    +     VL N  +RV
Sbjct: 130 RNSDSGRVVTGTVLQNGDVRV 150


>gi|308172888|ref|YP_003919593.1| integral inner membrane protein [Bacillus amyloliquefaciens DSM 7]
 gi|307605752|emb|CBI42123.1| putative integral inner membrane protein; putative exporter subunit
           [Bacillus amyloliquefaciens DSM 7]
 gi|328552528|gb|AEB23020.1| integral inner membrane protein; exporter subunit [Bacillus
           amyloliquefaciens TA208]
          Length = 210

 Score = 36.2 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 27/169 (15%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53
           M   RL+    I +  V A++ G       S H+V+T+E         I    +      
Sbjct: 1   MNRGRLILTNIIGLIVVLAIIGGGAYYYYQSTHYVKTDEAKVAGDMAAITAPAAGKVTDW 60

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           +L  G  V+ N +              I      +    +DG +V+  +  G  +     
Sbjct: 61  NLDEGKEVSKNDVVAK-----------IKGQQNADVKAIMDGTIVKNQVKNGQMV----- 104

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
                 G +       +   +  +I       I+  + VDVV+    + 
Sbjct: 105 ----QAGTTIAQEIDMKHLYITANIKETDIKDIEVGNKVDVVVDGDPNT 149


>gi|116621627|ref|YP_823783.1| 1A family penicillin-binding protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224789|gb|ABJ83498.1| penicillin-binding protein, 1A family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 762

 Score = 36.2 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 10/132 (7%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +  R+    + G+  L         +   H+  + +     A   N+  +   +AVG  +
Sbjct: 19  RGVRIAAASILGLCLLCLATFIFYYIKLAHIIDQRLAYGPFAGTTNIFSASHRIAVGDPL 78

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           TP            V  G+    + P     L    V V    G P+    +V+ G G +
Sbjct: 79  TPEEFT-----AHLVRSGYTSSPNNPEGWYLLHKNTVEVK-SPGGPL----VVEFGKGKI 128

Query: 122 SSLLPKGKRAAT 133
           +++   G+ A +
Sbjct: 129 AAISAPGRAAVS 140


>gi|322832560|ref|YP_004212587.1| flagella basal body P-ring formation protein FlgA [Rahnella sp.
           Y9602]
 gi|321167761|gb|ADW73460.1| flagella basal body P-ring formation protein FlgA [Rahnella sp.
           Y9602]
          Length = 260

 Score = 36.2 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
              ++  ++  G  +T   ++      + +    I D       Q+    +    I  G 
Sbjct: 137 TYWVAAKNVPAGAHLTQTDMQQKTGRLDLLPPKTILDS------QQAVNGITLRNISIGQ 190

Query: 107 PIRLEKLVDR 116
           P+ L  L   
Sbjct: 191 PLTLSMLRRP 200


>gi|218528667|ref|YP_002419483.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           chloromethanicum CM4]
 gi|218520970|gb|ACK81555.1| flagella basal body P-ring formation protein FlgA [Methylobacterium
           chloromethanicum CM4]
          Length = 164

 Score = 36.2 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           + T + G+V++ + A  A            +   + +       + + +    +  G  +
Sbjct: 3   RKTFVRGLVLASLAAGSA----------QPIAPAQAVEGMANAELMLPVPTVTIYPGDTI 52

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
             ++L   A+P        + D     A   + G + R  +L G+P+ +  + D  
Sbjct: 53  KESMLRMQAYPATYRARTAVID-----ASAAIAGRVARRMLLPGEPVPVNAVDDPR 103


>gi|262276423|ref|ZP_06054232.1| flagellar basal-body P-ring formation protein FlgA [Grimontia
           hollisae CIP 101886]
 gi|262220231|gb|EEY71547.1| flagellar basal-body P-ring formation protein FlgA [Grimontia
           hollisae CIP 101886]
          Length = 232

 Score = 36.2 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 6/68 (8%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
             V+++K  L  G+ +    L                          L G  V+  +  G
Sbjct: 110 TPVVVAKRPLDRGVTIAKEDLIIQLVDAR------FQRGQTYTDNATLLGSRVKRVVGIG 163

Query: 106 DPIRLEKL 113
           +PI    +
Sbjct: 164 EPISGNDI 171


>gi|134283631|ref|ZP_01770330.1| flagellar basal body P-ring formation protein FlgA [Burkholderia
           pseudomallei 305]
 gi|134245040|gb|EBA45135.1| flagellar basal body P-ring formation protein FlgA [Burkholderia
           pseudomallei 305]
          Length = 509

 Score = 36.2 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 31/116 (26%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 378 QAKLVVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 431

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 432 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 487


>gi|161611269|ref|YP_299813.2| flagellar basal body P-ring biosynthesis protein FlgA [Ralstonia
           eutropha JMP134]
          Length = 249

 Score = 36.2 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 26/124 (20%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
            ++   L  G  VTP  LE        +    I D        ++ G +    +  G P+
Sbjct: 129 YVAVRALGPGEPVTPADLEVRQGDLSTLPKAVITDPS------QVVGAVTANRVAAGSPM 182

Query: 109 RLEKL------------VDRGNGGLSSLLPKGKRA--------ATMDISISSAVGGMIKP 148
           R + L                 G    +  +GK            + +     V G+++ 
Sbjct: 183 RTDLLKKSIAVRSGQTVTVAVEGDAFQITSEGKVLADAAIGNSVQIRLRNGQVVSGLVRS 242

Query: 149 NDHV 152
            D V
Sbjct: 243 GDTV 246


>gi|16077965|ref|NP_388781.1| integral inner membrane protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|81555900|sp|O31593|YHBJ_BACSU RecName: Full=Putative efflux system component yhbJ
 gi|2633223|emb|CAB12728.1| putative integral inner membrane protein; putative exporter subunit
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 221

 Score = 36.2 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53
           M   RL+    I +  V A++AG       S ++V+T+E         I    +      
Sbjct: 12  MNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTNYVKTDEAKVAGDMAAITAPAAGKVSDW 71

Query: 54  DLAVGMVVTPNILE-----WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           DL  G  V                 +++ DG I      N      G  +   I
Sbjct: 72  DLDEGKTVKKGDTVAKIKGEQTVDVKSIMDGTIVKNEVKNGQTVQAGTTIAQTI 125


>gi|157283957|ref|YP_001468225.1| SAF domain-containing protein [Kineococcus radiotolerans SRS30216]
 gi|151363099|gb|ABS06101.1| SAF domain protein [Kineococcus radiotolerans SRS30216]
          Length = 252

 Score = 36.2 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 48/188 (25%), Gaps = 28/188 (14%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K  R M  +   +    A   A+   S                  +VL    D+  G  +
Sbjct: 58  KTNRPMAALAVLIIVGSATAGAVLYSS-------------AGDRHDVLALARDVPAGQKI 104

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T   L           +G            ++ G      + +G  +  +   D      
Sbjct: 105 TAEDLRVAEV------NGSGFSAVIKEHADQVVGSTAISSLPEGALLTNKMYQDDP---- 154

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIRVIAI 179
             +   G       +   S      +P   V V  V  ++   P      ++ +  V  +
Sbjct: 155 --IPEPGNVIVGASLKPGSVPSDA-QPGRRVAVWKVGVVNGNAPVADAEQIVESALVTEV 211

Query: 180 DHNIDSDE 187
             ++    
Sbjct: 212 STDVAGGN 219


>gi|171184850|ref|YP_001793769.1| periplasmic binding protein [Thermoproteus neutrophilus V24Sta]
 gi|170934062|gb|ACB39323.1| periplasmic binding protein [Thermoproteus neutrophilus V24Sta]
          Length = 723

 Score = 36.2 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 6/49 (12%), Positives = 18/49 (36%)

Query: 1  MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL 49
          M    ++G++++ + A+ A  +A                      ++V+
Sbjct: 1  MNTRVVIGVLLAVILAVFALYLAKPPTGGGVSNATAPPRAAGPSPVSVV 49


>gi|194014413|ref|ZP_03053030.1| YhbJ [Bacillus pumilus ATCC 7061]
 gi|194013439|gb|EDW23004.1| YhbJ [Bacillus pumilus ATCC 7061]
          Length = 210

 Score = 36.2 bits (82), Expect = 5.2,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 27/169 (15%)

Query: 1   MKLTRLMG---IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53
           M   RL+    I +  + A++AG       S + V+T+E         I    +      
Sbjct: 1   MNRGRLLLTNIIGLIVILAIIAGGAYYYYESTNFVKTDEAKVTGDMYQITAPAAGQIKGW 60

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           D+  G  V  +                          +     +    ++K +    +++
Sbjct: 61  DINEGDEVQKDS----------------TVAKVEGETKTNIKSVADGTLVKKEVQNNQQV 104

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
                 G +  L K      +  +I       I+  D VD+V+      
Sbjct: 105 QPGTVLGETIDLSK----LYITANIKETDIKNIEKGDKVDIVVDGDPDT 149


>gi|39996851|ref|NP_952802.1| elongation factor P [Geobacter sulfurreducens PCA]
 gi|61212653|sp|Q74CC2|EFP2_GEOSL RecName: Full=Elongation factor P 2; Short=EF-P 2
 gi|39983739|gb|AAR35129.1| translation elongation factor P [Geobacter sulfurreducens PCA]
 gi|298505865|gb|ADI84588.1| translation elongation factor P [Geobacter sulfurreducens KN400]
          Length = 187

 Score = 35.9 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 17/180 (9%)

Query: 53  GDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK 112
            DL  G+ +T +   ++    E    G    +++      + GV++      G+     +
Sbjct: 5   ADLKKGLKLTLDGAPYLVIAFEFSKPGKGQALYRTKMRNMITGVILDRTYRSGETFEPAR 64

Query: 113 LVDRGNGGL-------SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165
           L +R    L       + +  +      MD          +  N  VD+++    +    
Sbjct: 65  LEERRMQYLYKEDTHYTFMDNQTFEQVQMDEDAVGDAKNFLIDNLEVDILLFGEKAIG-- 122

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLE------LTP--MQAKALVAAQSVAKLS 217
                  N+RV+  D  +  D        AT+E      + P   + + +V      + S
Sbjct: 123 VTLPNFVNLRVVQTDPWVKGDTSGSDSKPATVETGYILRVPPFIEEGEMIVIDTRSGEYS 182


>gi|110677664|ref|YP_680671.1| flagellar basal body P-ring biosynthesis protein FlgA [Roseobacter
           denitrificans OCh 114]
 gi|109453780|gb|ABG29985.1| flagella basal body P-ring formation protein FlgA, putative
           [Roseobacter denitrificans OCh 114]
          Length = 140

 Score = 35.9 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/109 (11%), Positives = 34/109 (31%), Gaps = 10/109 (9%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V++    +     +T + +              I + +    M ++ G   R  +  G 
Sbjct: 20  EVVVPAKTIRANATITASDITLKP----------IQNENAYTLMADVVGQEARTTLYAGR 69

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
           PI  + +        + ++    +++ + I             D V ++
Sbjct: 70  PILFDDIGPPAIVSRNQIVLLSYQSSGLKILTEGRALQRGGVGDRVRIM 118


>gi|71906387|ref|YP_283974.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Dechloromonas aromatica RCB]
 gi|71846008|gb|AAZ45504.1| flagellar protein FlgA [Dechloromonas aromatica RCB]
          Length = 225

 Score = 35.9 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +    A   N + +   LA G +V P  +  ++     +  G + D           G  
Sbjct: 93  VPVQIAVTGNYVTTTRPLAAGQLVQPGDIATMSGDLSQLPTGIVTDP------TSAVGKT 146

Query: 98  VRVPILKGDPIRLEKLVD 115
           +R  +  G P+R ++L+ 
Sbjct: 147 LRNSLGAGQPLRSDQLLP 164


>gi|94312665|ref|YP_585874.1| flagellar basal body P-ring biosynthesis protein FlgA [Cupriavidus
           metallidurans CH34]
 gi|93356517|gb|ABF10605.1| flagellar basal body P-ring biosynthesis protein FlgA [Cupriavidus
           metallidurans CH34]
          Length = 245

 Score = 35.9 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 26/134 (19%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               +   +  ++   +  G  +T   LE        +    + D        ++DG + 
Sbjct: 114 QARVSVLTDYYVAARAMGPGETITAADLEVRQGDLAMLPRAVVTDPS------QVDGAVS 167

Query: 99  RVPILKGDPIRLEKLVDR------------GNGGLSSLLPKGKR--------AATMDISI 138
              I  G P+R + +                 G    L  +GK            + +  
Sbjct: 168 ANRIAAGSPMRTDLVRKPIAVKSGQTVNVTVEGDSFQLSSEGKVLTDAATGNMVQVRLRN 227

Query: 139 SSAVGGMIKPNDHV 152
              V G+++  D V
Sbjct: 228 GQVVSGLVRSGDTV 241


>gi|296130159|ref|YP_003637409.1| hypothetical protein Cfla_2320 [Cellulomonas flavigena DSM 20109]
 gi|296021974|gb|ADG75210.1| conserved hypothetical protein [Cellulomonas flavigena DSM 20109]
          Length = 221

 Score = 35.9 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 55/206 (26%), Gaps = 22/206 (10%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++    +    V           + + V +++  L  G  ++   L        +  DG+
Sbjct: 26  LLVGIALIASSVVLGSWAVTTAQRTVPVYVARDVLVPGAALSSAALVVADVRLADRVDGY 85

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
           +             G ++   +  G+ +            +        RA  + +S   
Sbjct: 86  LRADEPLPD-----GAVLLRTVGAGELV--------PVAAVGDATDLDVRAVPVALSGP- 131

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID------HNIDSDERVLVGST 194
                ++    VD+           T     +  R +A         + D         T
Sbjct: 132 -APSGLQAGSRVDLWFTPEPPTEGATEPGGDAVPRELAAGLTVAELSSPDGAFASGGART 190

Query: 195 ATLELTPMQAKALVAA-QSVAKLSLV 219
           A + +       ++ A      + LV
Sbjct: 191 AHVLVPVDDLPTVLGALAGRGTVDLV 216


>gi|255072065|ref|XP_002499707.1| carbohydrate-binding module family 48 protein [Micromonas sp.
           RCC299]
 gi|226514969|gb|ACO60965.1| carbohydrate-binding module family 48 protein [Micromonas sp.
           RCC299]
          Length = 590

 Score = 35.9 bits (81), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 7/147 (4%)

Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
                  +   +G  AA +         GM+   D +D+V     S   P     L    
Sbjct: 198 PVRKAFHACYEQGITAAPLWDEHQQEFVGMLSTGDFIDIVQSLGPSLTAPIGDEELDKAT 257

Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV-AKLSLVLRSIADLNPSSSEDS 234
           + ++     ++  V  G   +  + P  +  LV+   +  +L++    +    P     +
Sbjct: 258 IASVREERAAESGVRPGPLVS--VRPEDSLHLVSLTLLQGRLAMA--PVLSYGPQVPRGA 313

Query: 235 DVWDVQEEGKE--IQIIKAGVIVNKDG 259
                    KE  +   + G      G
Sbjct: 314 TPSATPASSKEAGLGDARGGAGTMGAG 340


>gi|167900902|ref|ZP_02488107.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           pseudomallei NCTC 13177]
          Length = 224

 Score = 35.9 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 93  QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 146

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 147 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 202


>gi|121533397|ref|ZP_01665225.1| Altronate dehydratase [Thermosinus carboxydivorans Nor1]
 gi|121307956|gb|EAX48870.1| Altronate dehydratase [Thermosinus carboxydivorans Nor1]
          Length = 495

 Score = 35.9 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 8/113 (7%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV-----LVRVP 101
           NV ++  D+  G  +  +     A   E++  G    +      + +             
Sbjct: 11  NVAVALRDIRQGETLAADNATVTA--REDIPKGHKIALCDLQPGEHVIKYGFPIGHATSS 68

Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
           +  G  +    +       L+        A +  +       G  +P+  V V
Sbjct: 69  VAAGQWLHSHNVRTNLGEILAYEYKPEPPAVS-PVPCRHTFRGYRRPDGRVGV 120


>gi|302539254|ref|ZP_07291596.1| LOW QUALITY PROTEIN: membrane protein [Streptomyces sp. C]
 gi|302448149|gb|EFL19965.1| LOW QUALITY PROTEIN: membrane protein [Streptomyces sp. C]
          Length = 231

 Score = 35.9 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 24/102 (23%), Gaps = 5/102 (4%)

Query: 19  AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78
           A      +++                   VL    D+  G  +T   +       ++   
Sbjct: 34  AAAALSTVLAVAAALGAAAAVSAVGDRTKVLAIANDVPAGQPLTDADIIVAEVSADSA-- 91

Query: 79  GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
                         + G    V + KG  +   +L      G
Sbjct: 92  ---LTPMPATDRASVVGKRPAVDLRKGSLLVAGQLQPGTGLG 130


>gi|163840503|ref|YP_001624908.1| ABC transporter ATP-binding and permease protein [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953979|gb|ABY23494.1| ABC transporter ATP-binding and permease protein [Renibacterium
           salmoninarum ATCC 33209]
          Length = 606

 Score = 35.9 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 14/164 (8%)

Query: 94  DGVLVRVPILKG-DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
            G      ++ G  P     +   G   +   L + +R   +           +     V
Sbjct: 405 AGKSTLGRLIAGIHPPTEGTVTVGGVPLVDRPLDELRREVAL-----VTQEHHVFVGSVV 459

Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212
           D V +         V   L+++  +A    +       VGS A   LTP QA+ +  A  
Sbjct: 460 DNVRLGRDDASALEVEKALADVGALAWAQELPEGLETEVGSGA-FALTPAQAQEIALA-- 516

Query: 213 VAKLSLVLRSIADLNP-SSSEDSDVWDVQEEGKEIQIIKAGVIV 255
                LVL     L    ++   D    ++  + +  + AG  V
Sbjct: 517 ----RLVLADPHTLVLDEATSLIDPQAARDLERSLNAVLAGRTV 556


>gi|124515527|gb|EAY57037.1| Secretion protein (HlyD) [Leptospirillum rubarum]
 gi|206601751|gb|EDZ38234.1| Secretion protein (HlyD) [Leptospirillum sp. Group II '5-way CG']
          Length = 419

 Score = 35.9 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/182 (8%), Positives = 52/182 (28%), Gaps = 9/182 (4%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M     + I ++ V  +  G  A+R +        +            ++   +  +   
Sbjct: 1   MNGRTFVAISLALVLGMGIGAGAIRWMGQSTGSVPKGGGNMGKNPERKILYWRN-PMNAS 59

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           +  +         + +            ++    G+   + I    P+  +         
Sbjct: 60  IHADHPMKDNMGMDYIPVYAETSGASGKSVSVNSGIRQTLGIRL-APVERKNFSRTLRTA 118

Query: 121 LSSLLPKGK-RAATMDIS------ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173
            + +  + + RA +   S         + G  ++  D +  +    L+  +    + L  
Sbjct: 119 ATVVFDEHRTRAISTRFSGWIRDLDVRSAGDPVRKGDIIAWIYSPELASSETEARIALQA 178

Query: 174 IR 175
           ++
Sbjct: 179 LK 180


>gi|145592208|ref|YP_001154210.1| extracellular solute-binding protein [Pyrobaculum arsenaticum DSM
          13514]
 gi|145283976|gb|ABP51558.1| extracellular solute-binding protein, family 3 [Pyrobaculum
          arsenaticum DSM 13514]
          Length = 282

 Score = 35.9 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 3  LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL--AVGMV 60
          +   +  VV+ V  L+AG +     +P         +   A    V +   D+    G +
Sbjct: 1  MKSTILAVVALVVGLIAGYLVGMYSAPKPTAPATQTSTPAAAQCPVSV---DIIKKRGKL 57

Query: 61 VTPNILEWVAF 71
          +      W  +
Sbjct: 58 ILGTDATWPPW 68


>gi|302038298|ref|YP_003798620.1| putative n-acetylneuraminate synthase [Candidatus Nitrospira
           defluvii]
 gi|300606362|emb|CBK42695.1| putative N-acetylneuraminate synthase [Candidatus Nitrospira
           defluvii]
          Length = 348

 Score = 35.9 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 17  LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76
           LV G+ A+        Q      E  A     ++S+  +  G V+TP ++ WV  P    
Sbjct: 257 LVKGVDAVFRGRGAERQIFPEEREIVAWARESVVSEVAIPRGTVITPTMV-WVKRPSPG- 314

Query: 77  FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
             G +        ++++ G + +  I K   IR E+L
Sbjct: 315 -PGAVAAKD----LKKVIGKVAKTDIPKDSQIRWEQL 346


>gi|126440298|ref|YP_001057318.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           pseudomallei 668]
 gi|126219791|gb|ABN83297.1| flagellar basal body P-ring formation protein FlgA [Burkholderia
           pseudomallei 668]
          Length = 509

 Score = 35.9 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 378 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 431

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 432 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 487


>gi|291085839|ref|ZP_06354200.2| putative flagellar protein [Citrobacter youngae ATCC 29220]
 gi|291070006|gb|EFE08115.1| putative flagellar protein [Citrobacter youngae ATCC 29220]
          Length = 260

 Score = 35.9 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +   P   I V++ K  +A   V+T + L+   F   N  +G + +      M E  G+ 
Sbjct: 125 VAVRPDVSIPVVMPKSLIARDTVITADDLQLKKFNISNQREGLMTN------MDEAIGLT 178

Query: 98  VRVPILKGDPIRLEKLVDR 116
            +  +  G PI   +LV  
Sbjct: 179 SKRALQPGKPITRSELVLP 197


>gi|217424999|ref|ZP_03456495.1| flagellar basal body P-ring formation protein FlgA [Burkholderia
           pseudomallei 576]
 gi|254196807|ref|ZP_04903231.1| flagellar basal body P-ring formation protein FlgA [Burkholderia
           pseudomallei S13]
 gi|169653550|gb|EDS86243.1| flagellar basal body P-ring formation protein FlgA [Burkholderia
           pseudomallei S13]
 gi|217392019|gb|EEC32045.1| flagellar basal body P-ring formation protein FlgA [Burkholderia
           pseudomallei 576]
          Length = 509

 Score = 35.9 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 378 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 431

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 432 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 487


>gi|312899115|ref|ZP_07758493.1| translation elongation factor P [Megasphaera micronuciformis F0359]
 gi|310619782|gb|EFQ03364.1| translation elongation factor P [Megasphaera micronuciformis F0359]
          Length = 185

 Score = 35.9 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 9/157 (5%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           +I+  D   G+ +  +   W     ++V  G      +        G +V      G+ +
Sbjct: 1   MITSNDFRPGVTIEIDGQVWQVVEFQHVKPGKGAAFVRAKIKNLETGAVVERTWNAGEKV 60

Query: 109 RLEKL-------VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161
           +  ++       +   +G    +  +      ++     +    +K   +V V+M +   
Sbjct: 61  QEGRVDRRQMQYLYESDGMYVFMDNESYEQIELNKDALGSAVNFLKEEMNVSVMMFKGKV 120

Query: 162 ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLE 198
                   V   +RV+  D  +  D        ATLE
Sbjct: 121 IGIDLPATVE--LRVVETDPGVRGDTATGGSKPATLE 155


>gi|254490346|ref|ZP_05103535.1| efflux transporter, RND family, MFP subunit, putative [Methylophaga
           thiooxidans DMS010]
 gi|224464479|gb|EEF80739.1| efflux transporter, RND family, MFP subunit, putative [Methylophaga
           thiooxydans DMS010]
          Length = 552

 Score = 35.9 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 14/185 (7%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M L  ++  +   +  + AG  A +      +    +     A       S   +  G  
Sbjct: 1   MNLKTIIVFIFVILMMIAAGYAAYQWGMQRGMGMSTMPANTTAAKATKDPSNWSIPEGEE 60

Query: 61  VTPNILEWVAFPEENVFDG-----FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115
            T   +E      +   D      F  D   P    E  G           P     LV 
Sbjct: 61  ATRRHMEAGLKAGDIDPDTGRQILFYQDPMVPGNKFETPGK---------SPYMDMMLVP 111

Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175
              G  +S     +   ++   I   +G  I P    D+                  NI+
Sbjct: 112 AYKGTDASDSTAEQGGVSIHSRIQQNIGMRIAPVTREDIATTIPAVGAVAWNEREQVNIQ 171

Query: 176 VIAID 180
             A+ 
Sbjct: 172 ARALG 176


>gi|167843903|ref|ZP_02469411.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           pseudomallei B7210]
          Length = 222

 Score = 35.9 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 91  QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 144

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 145 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 200


>gi|167822313|ref|ZP_02453784.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           pseudomallei 9]
          Length = 218

 Score = 35.9 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 87  QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 140

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 141 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 196


>gi|157959906|ref|YP_001499940.1| SAF domain-containing protein [Shewanella pealeana ATCC 700345]
 gi|157844906|gb|ABV85405.1| SAF domain protein [Shewanella pealeana ATCC 700345]
          Length = 254

 Score = 35.9 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +         V ++   L  G  ++   +EW     +        D +    + ++ G  
Sbjct: 121 VRATVEVRAKVPVANRLLRRGEHISLADIEWQEVNLDA------SDRNLVGQLDQIVGRQ 174

Query: 98  VRVPILKGDPIRLEKLVDRG 117
           V   + +   I+ ++L D  
Sbjct: 175 VVRKLRRHQAIKSQQLDDPQ 194


>gi|321314626|ref|YP_004206913.1| putative exporter subunit [Bacillus subtilis BSn5]
 gi|320020900|gb|ADV95886.1| putative integral inner membrane protein; putative exporter subunit
           [Bacillus subtilis BSn5]
          Length = 210

 Score = 35.9 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53
           M   RL+    I +  V A++AG       S ++V+T+E         I    +      
Sbjct: 1   MNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTNYVKTDEAKVAGDMAAITAPAAGKVSDW 60

Query: 54  DLAVGMVVTPNILE-----WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           DL  G  V                 +++ DG I      N      G  +   I
Sbjct: 61  DLDEGKTVKKGDTVAKIKGEQTVDVKSIMDGTIVKNEVKNGQTVQAGTTIAQTI 114


>gi|325111112|ref|YP_004272180.1| flagella basal body P-ring formation protein FlgA [Planctomyces
           brasiliensis DSM 5305]
 gi|324971380|gb|ADY62158.1| flagella basal body P-ring formation protein FlgA [Planctomyces
           brasiliensis DSM 5305]
          Length = 447

 Score = 35.9 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 10/169 (5%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           ++    V    +     +    ++   VL  K  L  G V+  + L+WV           
Sbjct: 183 LLRFATVDSQGLPVARELRVVLSESPRVLALKRALPRGKVIRADDLQWVE---------A 233

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140
                     QE+ G      +    P++   +        + ++       ++ +    
Sbjct: 234 EQTAGLFLDPQEVIGTETIRSVRADQPLQQSDVRQLPLVRRNEIVSVSANIGSISVRRYC 293

Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189
              G       V +V      ++       L    V+    ++      
Sbjct: 294 RSLGEASLGQFVTLV-PVDGKDKITARVTGLREAEVLIDGQDLPGASAQ 341


>gi|237810457|ref|YP_002894908.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           pseudomallei MSHR346]
 gi|237503791|gb|ACQ96109.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           pseudomallei MSHR346]
          Length = 509

 Score = 35.9 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 378 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 431

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 432 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 487


>gi|315091591|gb|EFT63567.1| conserved domain protein [Propionibacterium acnes HL110PA4]
          Length = 144

 Score = 35.9 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 39/134 (29%), Gaps = 6/134 (4%)

Query: 86  QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145
             + +  L G      +  G  +    +     G    +   GK    + ++      G 
Sbjct: 12  PADQLDSLVGKRATADLRAGSLLPAGAI-----GPADVVPAPGKSLVGLKLAAGQIPIGD 66

Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAK 205
           +     + ++   +            ++I+  A        +     +   +E+    A 
Sbjct: 67  LAAGTKLRLIQTSAGGSSTTGQGATNTDIQSWA-ATMASGTKSTEQVTLINVEVDSRDAA 125

Query: 206 ALVAAQSVAKLSLV 219
            +    S  ++++V
Sbjct: 126 RIAQLTSQGRIAVV 139


>gi|167736698|ref|ZP_02409472.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           pseudomallei 14]
          Length = 221

 Score = 35.9 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 90  QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 143

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 144 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 199


>gi|288940403|ref|YP_003442643.1| flagella basal body P-ring formation protein FlgA [Allochromatium
           vinosum DSM 180]
 gi|288895775|gb|ADC61611.1| flagella basal body P-ring formation protein FlgA [Allochromatium
           vinosum DSM 180]
          Length = 245

 Score = 35.9 bits (81), Expect = 6.8,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +     + + V++ +  ++   V+ P+ +         + +G+  +        ++ G+ 
Sbjct: 112 VPARIERHLPVVVLERPISRQQVIGPDDIRIERQAVSTLTNGYFTEAS------DVVGLA 165

Query: 98  VRVPILKGDPIRLEKLVDRG 117
            R  ++ G  +    +  R 
Sbjct: 166 SRRRLMPGQVLTSAHVTQRR 185


>gi|30248318|ref|NP_840388.1| flagellar basal body P-ring biosynthesis protein FlgA [Nitrosomonas
           europaea ATCC 19718]
 gi|30138204|emb|CAD84212.1| putative flagella basal body P-ring formation protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 230

 Score = 35.9 bits (81), Expect = 6.8,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 6/72 (8%)

Query: 46  INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105
             V+ +   +++G  +    +         +      D        ++ G +    +  G
Sbjct: 106 TRVVHAAQPVSMGKQLEAQDIVSKEADLVRIPGEVATDPD------QVIGKVATTFLASG 159

Query: 106 DPIRLEKLVDRG 117
            PIR  +L    
Sbjct: 160 QPIRTHQLRAPH 171


>gi|126453246|ref|YP_001064560.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           pseudomallei 1106a]
 gi|242316721|ref|ZP_04815737.1| flagellar basal body P-ring formation protein FlgA [Burkholderia
           pseudomallei 1106b]
 gi|126226888|gb|ABN90428.1| flagellar basal body P-ring formation protein FlgA [Burkholderia
           pseudomallei 1106a]
 gi|242139960|gb|EES26362.1| flagellar basal body P-ring formation protein FlgA [Burkholderia
           pseudomallei 1106b]
          Length = 507

 Score = 35.5 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 376 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 429

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 430 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 485


>gi|209964691|ref|YP_002297606.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Rhodospirillum centenum SW]
 gi|209958157|gb|ACI98793.1| flagella basal body P-ring formation protein FlgA, putative
           [Rhodospirillum centenum SW]
          Length = 326

 Score = 35.5 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 6/125 (4%)

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
           + I       + V I    L  G V+    + W+  P E V    + D+     +     
Sbjct: 177 QTIGARAQDMVEVPILNRRLGSGEVIGDQDIAWIKVPRERVSADVVTDLENLVGLAARRT 236

Query: 96  VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155
           +    P+   D      +       L    P    A T+     +   G +   + V +V
Sbjct: 237 LAANQPVRGRDVRTPVVVARGALVTLLLQTP----AMTLTAQGKALADGGL--GESVRIV 290

Query: 156 MVRSL 160
              S 
Sbjct: 291 NTTSN 295


>gi|40388707|gb|AAR85531.1| polyketide synthase [Peyronellaea zeae-maydis]
          Length = 2530

 Score = 35.5 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 22/162 (13%)

Query: 41   NPAKFINVLISKGDLA-----VGMVVTPNILEWVAFPEENVF---DGFIDDVHQPNAMQE 92
             P + ++V ++ GD+       G+     ++     P E++     G +  V        
Sbjct: 1839 APDERVSVELAAGDIEVEVQAAGINFKDVMMAMGQIPIEDLGLECSGMVTSVGSQVQCFA 1898

Query: 93   LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK---RAATMDISISSA-----VGG 144
            +   +V   +  G      ++    +  L+  +P       AA + I+  +A       G
Sbjct: 1899 VGDRVVT--MGPGSFCTRLRV----DARLAYRIPDSMSWETAAALPITHVTAYHAVRHLG 1952

Query: 145  MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186
             I   D V V        +      +++  RV+    + D  
Sbjct: 1953 RIVRGDTVLVHAAAGGLGQALVELSIMAGARVLVTVGSADKK 1994


>gi|27380940|ref|NP_772469.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Bradyrhizobium japonicum USDA 110]
 gi|27354106|dbj|BAC51094.1| blr5829 [Bradyrhizobium japonicum USDA 110]
          Length = 382

 Score = 35.5 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 10/168 (5%)

Query: 30  HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNA 89
           +   T+   T    + + V +   D+    ++  + +     P+  V             
Sbjct: 178 NPAPTKLRFTGTAIETVEVAVLTRDIDRADLLKSSDVALERRPKAEVTGEAASR------ 231

Query: 90  MQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149
                G+ +R P+  G PIR+  +V                   +     +  G  I+  
Sbjct: 232 -DRTIGMQLRRPMRAGTPIRVADIVKPD---FVQRDQNVTIIYQVPGLYLTTRGKAIESG 287

Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATL 197
              D V V +L  ++    VV    ++     +        V  T++L
Sbjct: 288 AEGDTVSVLNLQSKRTLTGVVTGRGQITVQGASQSPPMAPAVEQTSSL 335


>gi|82702447|ref|YP_412013.1| flageller protein FlgA [Nitrosospira multiformis ATCC 25196]
 gi|82410512|gb|ABB74621.1| flagellar protein FlgA [Nitrosospira multiformis ATCC 25196]
          Length = 248

 Score = 35.5 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 26/128 (20%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
             L+S   L  G V+  + L         +  G + D +      +  G  +   +  G 
Sbjct: 125 EYLVSTRPLRQGQVIDASDLTSRKGDLTQLPPGIVTDWN------QAIGRTLGGNLPFGS 178

Query: 107 PIRLEKL--------------------VDRGNGGLSSLLPKGKRAATMDISISSAVGGMI 146
           P+R + L                          G +       +  T+  +  + V G+ 
Sbjct: 179 PLRQDMLRAQTAVIQNQTVKLVSSGRGFSVSAEGKALTHATEGQPVTVRSASGAVVSGIA 238

Query: 147 KPNDHVDV 154
           +    V+V
Sbjct: 239 RAGAIVEV 246


>gi|331671800|ref|ZP_08372596.1| SAF domain protein [Escherichia coli TA280]
 gi|331070789|gb|EGI42148.1| SAF domain protein [Escherichia coli TA280]
          Length = 252

 Score = 35.5 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 9/142 (6%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +   P   + V+++K  +A    +T N +E   +         + D        +  G  
Sbjct: 117 VAVRPDVLVPVVMAKSVVARDTPLTANDVELKPYNVSAQRRNVLMDPD------DAIGFS 170

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
            +  +  G PI  E+LV          +    ++A +  S+        +  + V V   
Sbjct: 171 SKHALQPGRPITKEELVSPVLVERDQPVMIVYQSAGITASMPGVALKNGRKGEMVKV--- 227

Query: 158 RSLSERKPTVTVVLSNIRVIAI 179
           R+ S ++    +V  +  V  +
Sbjct: 228 RNASSQRVISAMVAESGVVTTV 249


>gi|218546639|gb|ACK98965.1| flp pilus assembly protein FlpB [Aeromonas hydrophila]
          Length = 90

 Score = 35.5 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 15/48 (31%)

Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75
          +      +       A+   VL++   +  G  + P  L W   P   
Sbjct: 30 TAVPPGEQAPEPAASARLAQVLVAAHRVQAGAFIHPEDLVWQTLPAAE 77


>gi|221308740|ref|ZP_03590587.1| hypothetical protein Bsubs1_04988 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313062|ref|ZP_03594867.1| hypothetical protein BsubsN3_04929 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317988|ref|ZP_03599282.1| hypothetical protein BsubsJ_04873 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322262|ref|ZP_03603556.1| hypothetical protein BsubsS_04974 [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 210

 Score = 35.5 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%)

Query: 1   MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53
           M   RL+    I +  V A++AG       S ++V+T+E         I    +      
Sbjct: 1   MNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTNYVKTDEAKVAGDMAAITAPAAGKVSDW 60

Query: 54  DLAVGMVVTPNILE-----WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102
           DL  G  V                 +++ DG I      N      G  +   I
Sbjct: 61  DLDEGKTVKKGDTVAKIKGEQTVDVKSIMDGTIVKNEVKNGQTVQAGTTIAQTI 114


>gi|161723214|ref|YP_106896.2| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           pseudomallei K96243]
          Length = 254

 Score = 35.5 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 123 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 176

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 177 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 232


>gi|116694215|ref|YP_728426.1| flagellar basal body P-ring biosynthesis protein FlgA [Ralstonia
           eutropha H16]
 gi|113528714|emb|CAJ95061.1| flagellar basal body P ring formation protein [Ralstonia eutropha
           H16]
          Length = 263

 Score = 35.5 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 37/134 (27%), Gaps = 26/134 (19%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               +   +  ++   L  G  V    +E        +    I D        +L G + 
Sbjct: 133 QARVSVLTDYYVAARALGPGEPVGQADIEVRQGDLGTLPRAVITDPA------QLAGAVT 186

Query: 99  RVPILKGDPIRLEKL------------VDRGNGGLSSLLPKGKRA--------ATMDISI 138
              I  G PIR + L                 G    +  +GK            + +  
Sbjct: 187 ANRIAAGSPIRSDLLRKAIAVRQGQTVTVAVEGDAFQITSEGKVLADAATGNTVQVRLRS 246

Query: 139 SSAVGGMIKPNDHV 152
              V G+++  D V
Sbjct: 247 GQVVNGLVRSGDTV 260


>gi|169786397|ref|XP_001827659.1| oxidoreductase [Aspergillus oryzae RIB40]
 gi|238507409|ref|XP_002384906.1| oxidoreductase, putative [Aspergillus flavus NRRL3357]
 gi|83776407|dbj|BAE66526.1| unnamed protein product [Aspergillus oryzae]
 gi|220689619|gb|EED45970.1| oxidoreductase, putative [Aspergillus flavus NRRL3357]
          Length = 295

 Score = 35.5 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 40/135 (29%), Gaps = 9/135 (6%)

Query: 9   IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI-NVLISKGDLAVGMVVTPNILE 67
           I + G+ A+   + A  L   +        T      +         ++ G  V  N L 
Sbjct: 5   IGIFGLGAMGTALAAKYLEHGYKTSVWNRTTAKAIPLVEQGAKLASTISEG--VNANDLI 62

Query: 68  WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127
            +      V +  + D  Q    + +        +  G P +  KL D      +  +  
Sbjct: 63  IICLLNNQVVEDALRDALQTLPSKTIV------NLTNGTPNQARKLADFVTSHGARYIHG 116

Query: 128 GKRAATMDISISSAV 142
           G  A    I    AV
Sbjct: 117 GIMAVPTMIGSPHAV 131


>gi|294084427|ref|YP_003551185.1| SAF domain-containing protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664000|gb|ADE39101.1| SAF domain protein [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 295

 Score = 35.5 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 11/101 (10%)

Query: 37  VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96
                  +   V+     +  G ++TP  + ++      V   F D         ++ G 
Sbjct: 159 TKPNKQMETARVVSLTRSMTRGDIITPEDVAFIDVSMREVVGVFFDH-------DDVVGR 211

Query: 97  LVRVPILKGDPIRLEKL----VDRGNGGLSSLLPKGKRAAT 133
            ++  I    P+   +L    +   +  ++ +   G  A +
Sbjct: 212 RLKTSISARKPVFARQLHPYWMVEKDQEVTLVNRAGAVAVS 252


>gi|270284475|ref|ZP_05966188.2| putative hemagglutinin-related protein [Bifidobacterium gallicum
           DSM 20093]
 gi|270276969|gb|EFA22823.1| putative hemagglutinin-related protein [Bifidobacterium gallicum
           DSM 20093]
          Length = 257

 Score = 35.5 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/104 (8%), Positives = 33/104 (31%), Gaps = 9/104 (8%)

Query: 14  VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73
              +   ++   ++                    V++++  +  G V+    +++  FP 
Sbjct: 6   ALCVGVALLVYVVLGAVMGLHA---------TRQVVVARHTIERGSVIGATDVQYQQFPA 56

Query: 74  ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117
            +            + +Q +   + +  I  G  + L+ +  + 
Sbjct: 57  TDSAGSTTPWADAADDLQLVSNHIAQFTITAGSVVFLDMVAQQP 100


>gi|167917159|ref|ZP_02504250.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           pseudomallei BCC215]
          Length = 232

 Score = 35.5 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 101 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 154

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 155 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 210


>gi|167892405|ref|ZP_02479807.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           pseudomallei 7894]
          Length = 220

 Score = 35.5 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 89  QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 142

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 143 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 198


>gi|170682474|ref|YP_001742369.1| lateral flagellar P-ring addition protein LfgA [Escherichia coli
           SMS-3-5]
 gi|170520192|gb|ACB18370.1| lateral flagellar P-ring addition protein LfgA [Escherichia coli
           SMS-3-5]
          Length = 245

 Score = 35.5 bits (80), Expect = 7.7,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +   P   + V+++K  +A    +T N +E   +                  + +  G+ 
Sbjct: 110 VAVRPDVLVPVVMAKSLVARDTPLTANDVELKPYNVSA------QRRDVLMELDDAIGLS 163

Query: 98  VRVPILKGDPIRLEKLVDR 116
            +  +  G PI  E+LV  
Sbjct: 164 SKHALQPGRPITKEELVSP 182


>gi|52427983|gb|AAU48576.1| flagella basal body P-ring formation protein FlgA [Burkholderia
           mallei ATCC 23344]
          Length = 251

 Score = 35.5 bits (80), Expect = 7.7,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 120 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 173

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 174 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 229


>gi|314929114|gb|EFS92945.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
          Length = 157

 Score = 35.5 bits (80), Expect = 7.8,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 48/172 (27%), Gaps = 16/172 (9%)

Query: 52  KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
              +  G +V    +   +   +             + + ++ G    V +  G  +   
Sbjct: 2   TRAVGQGEIVRNTDIGLTSVAVDRAVATI-----PADQLDKIVGRHALVDLSSGQLLGSH 56

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171
            + +         +  G+    + ++        +    HV VV      +      +  
Sbjct: 57  SVGE-------LRVAPGRSRVGLRLAAGRLPTVSLPAGSHVTVVETSPDKDTGTVSQLST 109

Query: 172 SNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
            +  V+A                  +E+    A  L    S+ ++++V R  
Sbjct: 110 VDAVVVAAPKATGDHSSW----LVDVEVDSGDAARLADLASLDRIAVVERGR 157


>gi|196233741|ref|ZP_03132581.1| hypothetical protein CfE428DRAFT_5748 [Chthoniobacter flavus
           Ellin428]
 gi|196222255|gb|EDY16785.1| hypothetical protein CfE428DRAFT_5748 [Chthoniobacter flavus
           Ellin428]
          Length = 427

 Score = 35.5 bits (80), Expect = 7.8,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 44/176 (25%), Gaps = 20/176 (11%)

Query: 54  DLAVGMVVTPNILEWVAFPEE-----NVFDGFIDDVHQPNAMQELDGVLVRVPILKGD-- 106
           D+ +G  +TP     V   ++      +  G I           + G      IL G+  
Sbjct: 145 DVQLGKKLTPEEAAKVDLTKDGFRWYALPPGEITKPEIVLDKG-VSGFYEARVILSGEKH 203

Query: 107 ---PIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS---SAVGGMIKPNDHVDVVMVRSL 160
                    +    +      +        +  +     +     +         +  + 
Sbjct: 204 MGGVPVQLTVTGPNDSATVYTVTDTTARLPLRETDDGEYTVTATELLTG------LTETA 257

Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216
                  T V    +V   +  + S          T+ LTP Q      A  V  L
Sbjct: 258 KVTNHAPTTVTPRAQVQVREQAVVSKFASRKKVPLTIALTPEQEADKALAAQVQAL 313


>gi|157371211|ref|YP_001479200.1| SAF domain-containing protein [Serratia proteamaculans 568]
 gi|157322975|gb|ABV42072.1| SAF domain protein [Serratia proteamaculans 568]
          Length = 217

 Score = 35.5 bits (80), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 6/87 (6%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           +S    Q    I          L+S   ++ G  +T   ++      + +    + +   
Sbjct: 74  ISARCGQERRFIQTQVQVTGKYLVSARGISAGSKLTAADIKLKTGRLDTLPPRTLTE--- 130

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKL 113
                +  G +    I  G P+ L  L
Sbjct: 131 ---AGKALGAVSLRNISPGQPLNLAML 154


>gi|67641534|ref|ZP_00440311.1| flagella basal body P-ring formation protein FlgA [Burkholderia
           mallei GB8 horse 4]
 gi|121598829|ref|YP_994286.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           mallei SAVP1]
 gi|124385761|ref|YP_001028065.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           mallei NCTC 10229]
 gi|161579515|ref|YP_104793.2| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           mallei ATCC 23344]
 gi|167001531|ref|ZP_02267326.1| flagella basal body P-ring formation protein FlgA [Burkholderia
           mallei PRL-20]
 gi|121227639|gb|ABM50157.1| flagella basal body P-ring formation protein FlgA [Burkholderia
           mallei SAVP1]
 gi|238522484|gb|EEP85928.1| flagella basal body P-ring formation protein FlgA [Burkholderia
           mallei GB8 horse 4]
 gi|243062733|gb|EES44919.1| flagella basal body P-ring formation protein FlgA [Burkholderia
           mallei PRL-20]
          Length = 254

 Score = 35.5 bits (80), Expect = 7.9,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 123 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 176

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 177 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 232


>gi|297560192|ref|YP_003679166.1| SAF domain protein [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296844640|gb|ADH66660.1| SAF domain protein [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 223

 Score = 35.5 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 25/188 (13%)

Query: 3   LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62
             R   +V++       G+  +  +     +              VL++  DL  G VVT
Sbjct: 28  PRRWRWLVLALGMMTAGGLTGVVALEQMDDRQG------------VLVADTDLPAGHVVT 75

Query: 63  PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122
              L        +V DG        + ++   G  + VP+ +G  +    L      G  
Sbjct: 76  AEDLRVARI---SVADGV--SFVGADRLEATVGQTLTVPVTEGGLLPEAAL------GTE 124

Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182
           +  P+  RA              I P   V VV+          V        V  +  +
Sbjct: 125 AAFPERDRAVLGVALRVGRFPASIGPGAAVSVVVHPEEGATGGGVE--AYRALVRDVQPS 182

Query: 183 IDSDERVL 190
              D  V 
Sbjct: 183 AAEDGSVE 190


>gi|261821149|ref|YP_003259255.1| flagellar basal body P-ring biosynthesis protein FlgA
           [Pectobacterium wasabiae WPP163]
 gi|261605162|gb|ACX87648.1| flagella basal body P-ring formation protein FlgA [Pectobacterium
           wasabiae WPP163]
          Length = 222

 Score = 35.5 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 6/87 (6%)

Query: 27  VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86
           +S    Q    I        N + S   +  G  +T N +       + +       +  
Sbjct: 79  LSVRCEQQRRFIQTEVQVTGNYVTSSRPINRGTTLTENDIGLTKGRLDLLP------LRP 132

Query: 87  PNAMQELDGVLVRVPILKGDPIRLEKL 113
              +Q   G ++   +  G  I    +
Sbjct: 133 ILTLQGAQGAVLLRDLTPGQVITASMI 159


>gi|254295810|ref|ZP_04963267.1| flagellar basal body P-ring formation protein FlgA [Burkholderia
           pseudomallei 406e]
 gi|157806317|gb|EDO83487.1| flagellar basal body P-ring formation protein FlgA [Burkholderia
           pseudomallei 406e]
          Length = 495

 Score = 35.5 bits (80), Expect = 8.1,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 364 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 417

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
            + +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 418 LMRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 473


>gi|323975934|gb|EGB71028.1| flagella basal body P-ring formation protein FlgA [Escherichia coli
           TW10509]
          Length = 252

 Score = 35.5 bits (80), Expect = 8.2,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 9/142 (6%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +   P   + V+++K  +A    +T N +E   +                  + E  G+ 
Sbjct: 117 VAVRPDVLVPVVMAKSLVARDTPLTANDVELKPYNVSA------QRRDVLMDLNEAIGLS 170

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
            +  +  G P+  E+LV          +    ++A +  S+        +  + V V   
Sbjct: 171 SKHALQPGRPLTKEELVSPVLIERDQPVMIVYQSAGITASMPGVALKNGRKGEMVKV--- 227

Query: 158 RSLSERKPTVTVVLSNIRVIAI 179
           R+ S ++    +V  +  V  +
Sbjct: 228 RNASSQRVISAIVAESGVVTTV 249


>gi|257055354|ref|YP_003133186.1| xanthine dehydrogenase, molybdenum binding subunit apoprotein
           [Saccharomonospora viridis DSM 43017]
 gi|256585226|gb|ACU96359.1| xanthine dehydrogenase, molybdenum binding subunit apoprotein
           [Saccharomonospora viridis DSM 43017]
          Length = 813

 Score = 35.5 bits (80), Expect = 8.2,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 55/196 (28%), Gaps = 21/196 (10%)

Query: 29  PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88
           P      +       + I V++++   A    +    +E+   P     +  + D     
Sbjct: 96  PRRPILAQGKVNYAGEGIAVVVARSPEAAEDALAEIDVEYDELPVVLGLENALADDAPLV 155

Query: 89  AMQELDGVLVRVPILKGD---------PIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139
                            +          I   ++V R       L+P      ++ +  +
Sbjct: 156 HEDLGTNRNAVWTFDSAEAGSGDDVEQAISGSEVVLRRRFRQQRLIPAFMEPRSVVVDPT 215

Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLEL 199
           +A   M        ++   S          +    RVIA D       +        L +
Sbjct: 216 AAQLTMWSATQVPHILKTMSALTLGIPEHQL----RVIAPDVGGGFGGK--------LAV 263

Query: 200 TPMQAKALVAAQSVAK 215
            P +  AL+ AQ + K
Sbjct: 264 IPEEFIALLVAQRLGK 279


>gi|84496007|ref|ZP_00994861.1| hypothetical protein JNB_00770 [Janibacter sp. HTCC2649]
 gi|84382775|gb|EAP98656.1| hypothetical protein JNB_00770 [Janibacter sp. HTCC2649]
          Length = 189

 Score = 35.5 bits (80), Expect = 8.2,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 16/181 (8%)

Query: 40  ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99
              +   +V+  +  +  G V+    L  V    +               ++ L G    
Sbjct: 20  TASSDTRSVVAVRSAVERGAVIGREDLMAVQVGVDPA-----LTPVPAGQVETLVGQRAA 74

Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159
           V +  G  +  +++        + L P+G     + +  S   G  +   D V VV    
Sbjct: 75  VDMAAGTLVTRDQVS------ATVLPPRGFSVVGVALPASLLPGEPLVTGDQVRVVATPG 128

Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219
                     V     V  +  + D D      +  ++++   +A  L A  +   +++V
Sbjct: 129 AGGEVVDGPPVTIPATV--VGQHPDPDT---GATVVSVQVPESRAAELAARAATGNVAIV 183

Query: 220 L 220
           L
Sbjct: 184 L 184


>gi|157691640|ref|YP_001486102.1| hypothetical protein BPUM_0858 [Bacillus pumilus SAFR-032]
 gi|157680398|gb|ABV61542.1| hypothetical protein BPUM_0858 [Bacillus pumilus SAFR-032]
          Length = 210

 Score = 35.5 bits (80), Expect = 8.3,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 51/169 (30%), Gaps = 27/169 (15%)

Query: 1   MKLTRLMG---IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53
           M   RL+    I +  + A++AG       S + V+T+E         I    +      
Sbjct: 1   MNRGRLLLTNIIGLIVILAIIAGGAYYYYESTNFVKTDEAKVTGDMYQITAPAAGQIKGW 60

Query: 54  DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113
           D+  G  V  +                          +     +    ++K +    +++
Sbjct: 61  DINEGDEVQKDS----------------TVAKVEGETKTNIKSVADGTLVKKEVQNNQQV 104

Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
                 G +  L K      +  +I       I+  D VD+V+    S 
Sbjct: 105 QPGTVLGETIDLSK----LYITANIKETDIKNIEKGDKVDIVVDGDPST 149


>gi|270262405|ref|ZP_06190676.1| SAF domain-containing protein [Serratia odorifera 4Rx13]
 gi|270043089|gb|EFA16182.1| SAF domain-containing protein [Serratia odorifera 4Rx13]
          Length = 217

 Score = 35.5 bits (80), Expect = 8.4,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 49  LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108
           L+S  +++ G  +T   ++  +   + +    + +  +        G +    I  G P+
Sbjct: 96  LVSARNISAGSRLTAADVKLKSGRLDTLAPRTLTNADK------AIGAVSLRNISPGQPL 149

Query: 109 RLEKL 113
               L
Sbjct: 150 TFAML 154


>gi|120554102|ref|YP_958453.1| SAF domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120323951|gb|ABM18266.1| SAF domain [Marinobacter aquaeolei VT8]
          Length = 235

 Score = 35.5 bits (80), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
             LI+   LA G  +TP+++   +        G +         + + G+++R P+  G 
Sbjct: 111 PALIAARPLARGERLTPDLVTVNSVQINASRRGVLTR------KESVSGMMMRRPVNAGT 164

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152
            +  + L           +    R+ +  +S            + V
Sbjct: 165 VMTPDLLEAPNAIERGDHVIITARSGSFSVSSRGKALASAGVGEQV 210


>gi|291442510|ref|ZP_06581900.1| SAF domain-containing protein [Streptomyces ghanaensis ATCC 14672]
 gi|291345405|gb|EFE72361.1| SAF domain-containing protein [Streptomyces ghanaensis ATCC 14672]
          Length = 223

 Score = 35.5 bits (80), Expect = 8.6,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 28/226 (12%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           +   ++ + ++ + A  AG+  + L   +      V+ +                 G V+
Sbjct: 21  RRPGVIALSLALIAAGGAGVAVLLLQVGNRTPVVTVVRDVQV--------------GQVL 66

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121
           T   L   +   +             + ++ + G    V +  G  +   ++        
Sbjct: 67  TEQDLGEASVALDPA-----VKAVPADDLKSVVGKRAAVELKPGSLLSPSQVTKD----- 116

Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181
            SL+  G++   + +         + P   V +V V +            S+     I  
Sbjct: 117 -SLVKPGEQLVPIGLKPDQVPATALVPGQKVQLVYVPAQGATSVGDDGKQSDSAQETIAG 175

Query: 182 NIDSDERVLVGSTAT---LELTPMQAKALVAAQSVAKLSLVLRSIA 224
            +    + + G+      +           A  S   L LVL +  
Sbjct: 176 RVVKASKAVPGTGIVVVDVATAASDGPKAAAWVSAGALRLVLDAPD 221


>gi|313835136|gb|EFS72850.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
 gi|314970941|gb|EFT15039.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
          Length = 157

 Score = 35.5 bits (80), Expect = 8.7,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 48/172 (27%), Gaps = 16/172 (9%)

Query: 52  KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111
              +  G VV    +   +   +             + + ++ G    V +  G  +   
Sbjct: 2   TRAVGQGEVVRNTDIGLTSVAVDRAVATI-----PADQLDKIVGRHALVDLSSGQLLGSH 56

Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171
            + +         +  G+    + ++        +    HV VV      +      +  
Sbjct: 57  SVGE-------LRVAPGRSRVGLRLAAGRLPTVSLPAGSHVTVVETSPDKDTGTVSQLST 109

Query: 172 SNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223
            +  V+A                  +E+    A  L    S+ ++++V R  
Sbjct: 110 VDAVVVAAPKATGDHSSW----LVDVEVDSGDAARLADLASLDRIAVVERGR 157


>gi|254261371|ref|ZP_04952425.1| flagellar basal body P-ring formation protein FlgA [Burkholderia
           pseudomallei 1710a]
 gi|76579771|gb|ABA49246.1| flagella basal body P-ring formation protein FlgA, putative
           [Burkholderia pseudomallei 1710b]
 gi|254220060|gb|EET09444.1| flagellar basal body P-ring formation protein FlgA [Burkholderia
           pseudomallei 1710a]
          Length = 509

 Score = 35.5 bits (80), Expect = 8.8,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 378 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 431

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
            + +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 432 LMRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 487


>gi|110681322|ref|YP_684329.1| NeuB family protein [Roseobacter denitrificans OCh 114]
 gi|109457438|gb|ABG33643.1| NeuB family protein [Roseobacter denitrificans OCh 114]
          Length = 340

 Score = 35.1 bits (79), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 10/94 (10%)

Query: 21  IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80
           +   R +     +               +++   L  G  +T N L  +           
Sbjct: 257 LAVYRDLYGSAERDISGEATAIKNARRRVVAARPLTAGTTLTENDLIALR---------- 306

Query: 81  IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114
            DD  +      + G  +   +  G P++   L 
Sbjct: 307 SDDGIEIAHWDRVVGRSLAREVAGGTPLQWHDLS 340


>gi|206558964|ref|YP_002229724.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           cenocepacia J2315]
 gi|198035001|emb|CAR50873.1| putative flagellar basal body P-ring formation protein FlgA
           [Burkholderia cenocepacia J2315]
          Length = 403

 Score = 35.1 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  ++   L         +    I D        +  G   
Sbjct: 272 QAKVAVQATYYVAARQIAPGEPLSAADLVARDGDLTVLPLAVITDPA------QAIGATA 325

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              I  G P+R + L    +      +          IS   +V     P   V V
Sbjct: 326 LARISAGLPLRQDMLKSAASVSAGQTVRVVAAGPGFTISAEGSVLANAAPGQSVRV 381


>gi|167813796|ref|ZP_02445476.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           pseudomallei 91]
          Length = 211

 Score = 35.1 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D       Q+  G   
Sbjct: 80  QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 133

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              +  G P+R + L    +  +   +          IS   +V     P   V V
Sbjct: 134 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 189


>gi|158424260|ref|YP_001525552.1| galactarate dehydratase [Azorhizobium caulinodans ORS 571]
 gi|158331149|dbj|BAF88634.1| galactarate dehydratase [Azorhizobium caulinodans ORS 571]
          Length = 520

 Score = 35.1 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 2/113 (1%)

Query: 24  MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN-VFDGFID 82
           M    P  V+T   I  + +  + ++++   L  G  +          P+ + V    I 
Sbjct: 8   MTYQGPAGVETPRTIKVHESDNVAIVVNSFGLKPGTDLPDGTRLVEFVPQGHKVALTDIA 67

Query: 83  DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD 135
           D        E+ G      I +G  +   ++       LS+L    +  A + 
Sbjct: 68  DGAPILRYGEVIGR-AIGDIPRGAWVEESRVAMPVPPDLSALEKATRVPAPLP 119


>gi|24374764|ref|NP_718807.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           oneidensis MR-1]
 gi|24349430|gb|AAN56251.1|AE015762_8 flagellar basal-body P-ring formation protein FlgA, putative
           [Shewanella oneidensis MR-1]
          Length = 235

 Score = 35.1 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 20/128 (15%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   LA G +++P  +E     + ++         Q + + +L GV V+  + K +
Sbjct: 114 PVVVATEPLAPGELISPTQVEIRYVDQNSL------RGMQFSDINQLSGVRVKRRVAKNN 167

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS----AVGGMIKPNDHVDVVMVRSLSE 162
           PI    L                 A ++ +  S+     VG  ++  +  D + V++ S 
Sbjct: 168 PIFANNLCFVCKND----------AVSIYVRSSNFVLKTVGEALQDGNIGDQIRVKNSSS 217

Query: 163 RKPTVTVV 170
            K     V
Sbjct: 218 NKELDATV 225


>gi|264676566|ref|YP_003276472.1| flagellar protein FlgA [Comamonas testosteroni CNB-2]
 gi|299531290|ref|ZP_07044700.1| SAF domain-containing protein [Comamonas testosteroni S44]
 gi|262207078|gb|ACY31176.1| flagellar protein FlgA [Comamonas testosteroni CNB-2]
 gi|298720697|gb|EFI61644.1| SAF domain-containing protein [Comamonas testosteroni S44]
          Length = 252

 Score = 35.1 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 47  NVLISKGDLAVGMVVTPNI--LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104
              +++G++  G  ++        V + E++               Q+  G++   P+  
Sbjct: 130 PAWVAQGNIPAGKTLSAEDAAPAEVDWAEDSAP--------VFANAQDFIGMVAARPLTS 181

Query: 105 GDPIRLEKLVDR 116
           G  +R   +   
Sbjct: 182 GQALRQNMVRPP 193


>gi|310640541|ref|YP_003945299.1| aldo/keto reductase family oxidoreductase [Paenibacillus polymyxa
           SC2]
 gi|309245491|gb|ADO55058.1| Aldo/keto reductase family oxidoreductase [Paenibacillus polymyxa
           SC2]
          Length = 287

 Score = 35.1 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 113 LVDRGNGGLSSLLPKGKR--AATMDISISSAVGGMIKPN--DH---VDVVMVRSLSERKP 165
           L    + G+   L    R     + +    A GG ++    DH   VD+     ++  + 
Sbjct: 170 LYHAASRGIEYDLLPWSRTHGVPVMVYCPIAQGGRLRRGLLDHPVMVDIAASHGVTPSQI 229

Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210
            +  V+ +  V AI   +         + A+++LTP Q + +  A
Sbjct: 230 ALAWVIRDGDVWAIPKAVQESHVRENAAAASIQLTPEQLQQIDEA 274


>gi|118581420|ref|YP_902670.1| LolC/E family lipoprotein releasing system, transmembrane protein
           [Pelobacter propionicus DSM 2379]
 gi|118504130|gb|ABL00613.1| lipoprotein releasing system, transmembrane protein, LolC/E family
           [Pelobacter propionicus DSM 2379]
          Length = 420

 Score = 35.1 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 4/159 (2%)

Query: 2   KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61
           K T +  I +     +  G++A+ +V       EE + E        ++   +       
Sbjct: 17  KSTFISIISLISTAGVSLGVMALIVVLAVMTGFEEDLKEKILGTNAHVVVIRNGLPMDEY 76

Query: 62  TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV-PILKGDPIRL--EKLVDRGN 118
              + +  A P       FI +    ++ + + GV++R   +     +      LV+   
Sbjct: 77  RQVMEKLTAMPGITAATPFIYNQVMLSSGRNVSGVVLRGIDVPSDRLVTRLNASLVEGNT 136

Query: 119 GGLSSLLPKGKRAAT-MDISISSAVGGMIKPNDHVDVVM 156
             L   +  G  A   + I    A    ++  D ++VV 
Sbjct: 137 DNLDPKMGDGAVALPGLLIGKELARNLNLRLGDRINVVS 175


>gi|323191534|gb|EFZ76795.1| lateral flagellar P-ring addition protein [Escherichia coli
           RN587/1]
          Length = 245

 Score = 35.1 bits (79), Expect = 9.4,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 49/142 (34%), Gaps = 9/142 (6%)

Query: 38  ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97
           +   P   + V+++K  +A    +T N +E   +                    +  G  
Sbjct: 110 VAVRPDVLVPVVMAKSLVARDTPLTENDVELKPYNVSA------QRREVLMEPNDAIGFS 163

Query: 98  VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157
            +  +  G PI  E+L+     G    +    ++A +  S+        +  + V V   
Sbjct: 164 SKHALQPGRPITKEELISPVLVGRDQPVMIVYQSAGITASMPGVALKNGRKGEMVKV--- 220

Query: 158 RSLSERKPTVTVVLSNIRVIAI 179
           R+ S ++    +V  +  V  +
Sbjct: 221 RNASSQRVISAMVAESGVVTTV 242


>gi|127512273|ref|YP_001093470.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella
           loihica PV-4]
 gi|126637568|gb|ABO23211.1| SAF domain protein [Shewanella loihica PV-4]
          Length = 235

 Score = 35.1 bits (79), Expect = 9.4,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 13/126 (10%)

Query: 47  NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106
            V+++   L  G ++  + +      +  +         Q +    + G  V+  I    
Sbjct: 114 PVVVANQTLGPGDLIESDQIRLDYVEQSQL------RGQQFDDPVAVTGTRVKRRIPANQ 167

Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRA--ATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164
           P+    L     G + ++     RA    +  +  +   G +   D + V   RS     
Sbjct: 168 PLFASNLCFVCKGDIVAIYA---RADNFVIKTNGEALKDGNL--GDKIQVRNSRSNKTVD 222

Query: 165 PTVTVV 170
             VT +
Sbjct: 223 AHVTGI 228


>gi|172061976|ref|YP_001809628.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia
           ambifaria MC40-6]
 gi|171994493|gb|ACB65412.1| flagella basal body P-ring formation protein FlgA [Burkholderia
           ambifaria MC40-6]
          Length = 418

 Score = 35.1 bits (79), Expect = 9.4,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 6/116 (5%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
               A      ++   +A G  +T   L         +    I D        +  G   
Sbjct: 287 QAKVAVQATYYVAARQIAPGEPLTAADLVARDGDLTVLPLAVITDPA------QAVGATA 340

Query: 99  RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154
              I  G P+R + L    +      +          IS   +      P   + V
Sbjct: 341 LARISAGLPLRQDMLKSAASVSAGQTVRVVAAGPGFTISAEGSALANAAPGQSIRV 396


>gi|325960145|ref|YP_004291611.1| hypothetical protein Metbo_2426 [Methanobacterium sp. AL-21]
 gi|325331577|gb|ADZ10639.1| protein of unknown function DUF515 [Methanobacterium sp. AL-21]
          Length = 496

 Score = 35.1 bits (79), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162
           ++     A  + IS   A GG+I   D VDV    + S+
Sbjct: 291 IVTPDTVAVPVYISRIQAAGGLINVGDSVDVYQNVNTSQ 329


>gi|226939515|ref|YP_002794588.1| flagella basal body P-ring formation protein FlgA [Laribacter
           hongkongensis HLHK9]
 gi|226714441|gb|ACO73579.1| probable flagella basal body P-ring formation protein FlgA
           [Laribacter hongkongensis HLHK9]
          Length = 224

 Score = 35.1 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 6/78 (7%)

Query: 39  TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98
                    ++     L  G V+T   +            G    +      +++ G  +
Sbjct: 93  PVRVVSQQGLVTFIRPLEAGAVITAEDIRLEPSRNGRAPAGSFTRI------EDVVGKSL 146

Query: 99  RVPILKGDPIRLEKLVDR 116
              +  G  +R E L   
Sbjct: 147 GRGVGTGVTLRREMLASP 164


>gi|326772421|ref|ZP_08231705.1| PE-PGRS family protein [Actinomyces viscosus C505]
 gi|326637053|gb|EGE37955.1| PE-PGRS family protein [Actinomyces viscosus C505]
          Length = 770

 Score = 35.1 bits (79), Expect = 10.0,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 58/205 (28%), Gaps = 10/205 (4%)

Query: 15  FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74
             + A +  +R +             +P +   ++ +   L  G         +  FP +
Sbjct: 73  AGIDAALTTLRALGYRLSTPAREALTHPEQAWALVNAAARLTSGSPADEYRPFYPDFPIQ 132

Query: 75  NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATM 134
                        NA     G +V V IL        + +  G+G L+ L     R    
Sbjct: 133 VRSASEAT--LLVNAALHYLGDVVGVRILPDYRPSPREPLPGGDGALTELGLATARDLER 190

Query: 135 DISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST 194
            ++   A        D  D+  +R           V  N+ V+ +       +      T
Sbjct: 191 IVADLIAQATPFSVQDRADLTALRDFGPEAAPRVAVKENLAVLTV--TFPDLDFSASYRT 248

Query: 195 ATLELTPMQAKALVAAQSVAKLSLV 219
            T          L  A +   +SL 
Sbjct: 249 VT------DVLRLAVAMAGGDVSLA 267


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.307    0.129    0.311 

Lambda     K      H
   0.267   0.0401    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,543,654,009
Number of Sequences: 14124377
Number of extensions: 46804083
Number of successful extensions: 401131
Number of sequences better than 10.0: 3193
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 2146
Number of HSP's that attempted gapping in prelim test: 396007
Number of HSP's gapped (non-prelim): 4261
length of query: 263
length of database: 4,842,793,630
effective HSP length: 136
effective length of query: 127
effective length of database: 2,921,878,358
effective search space: 371078551466
effective search space used: 371078551466
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 80 (35.5 bits)