BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (263 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040405|gb|ACT57201.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 263 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 263/263 (100%), Positives = 263/263 (100%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV Sbjct: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG Sbjct: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID Sbjct: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ Sbjct: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 Query: 241 EEGKEIQIIKAGVIVNKDGEGIS 263 EEGKEIQIIKAGVIVNKDGEGIS Sbjct: 241 EEGKEIQIIKAGVIVNKDGEGIS 263 >gi|315121892|ref|YP_004062381.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495294|gb|ADR51893.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 267 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 163/266 (61%), Positives = 211/266 (79%), Gaps = 3/266 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK TRLMG+VVSG+FAL+AGIIAMRLVS HH+Q EE++ + + NVL++K +L VGMV Sbjct: 1 MKFTRLMGLVVSGLFALLAGIIAMRLVSHHHLQKEEIVAQPSIRLSNVLMAKSNLKVGMV 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +TP++LEWVAFP ENV GF+DDV +PNA++EL G +VR+PILKGDPIR EKLVD G G Sbjct: 61 ITPDVLEWVAFPAENVVVGFVDDVSRPNAIEELKGSIVRIPILKGDPIRFEKLVDHGQHG 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +SSLL KGKRA +DIS+S+AVGG++KPNDHVDV+MVR + ERK VVLSN+RV+AID Sbjct: 121 VSSLLSKGKRAVALDISVSNAVGGLVKPNDHVDVLMVRLIGERKTKTDVVLSNVRVLAID 180 Query: 181 HNIDSDERVLV--GSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVW 237 +D++ G+TATLELTPMQAK L+AAQ +A KL+LVLRSI+D + + E +D Sbjct: 181 QTLDAEGEPNGLIGNTATLELTPMQAKTLLAAQQIASKLTLVLRSISDFHSTDLEIADFN 240 Query: 238 DVQEEGKEIQIIKAGVIVNKDGEGIS 263 ++ G+ IQ+IK+G+I NKDGE +S Sbjct: 241 LGEDGGRGIQVIKSGIISNKDGEEMS 266 >gi|227823970|ref|YP_002827943.1| pilus assembly protein CpaB [Sinorhizobium fredii NGR234] gi|227342972|gb|ACP27190.1| pilus assembly protein CpaB [Sinorhizobium fredii NGR234] Length = 271 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 102/263 (38%), Positives = 161/263 (61%), Gaps = 5/263 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R++ + V+ A +AG++AM+L + E + E INVL++ L VG Sbjct: 1 MKPVRIIILAVAVGSAAMAGLLAMKLTRSPAQRMAEPLVEQA-PSINVLVASKSLPVGSR 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + W+A+P++ V +G I + ++P A+ +L G +VR+P+ G+P+R EK+ D N Sbjct: 60 LGADSIHWLAWPKDGVAEGMITEENRPAAIDDLAGAVVRLPLFDGEPVRQEKIADPSNRI 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +SSLLP GKRA +I++++ GG I PND VDV+MVR VLSN+RV+AID Sbjct: 120 MSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDVYLTETVLSNVRVLAID 179 Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236 ++ + + ++G+TATLELTP Q+K + AQ +A ++SL LRS+AD + +E +D Sbjct: 180 QQVEEKDDGSKSVIGTTATLELTPDQSKVMTVAQQMAERISLALRSVADAQEADTEAADY 239 Query: 237 WDVQEEGKEIQIIKAGVIVNKDG 259 + IQ+IK+G IV DG Sbjct: 240 LLSGDGQPSIQVIKSGSIVKNDG 262 >gi|15963893|ref|NP_384246.1| putative pilus assembly signal peptide protein [Sinorhizobium meliloti 1021] gi|307315790|ref|ZP_07595304.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C] gi|307320425|ref|ZP_07599842.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83] gi|15073068|emb|CAC41527.1| Putative pilus assembly signal peptide protein [Sinorhizobium meliloti 1021] gi|306893991|gb|EFN24760.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83] gi|306898558|gb|EFN29231.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C] Length = 269 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 106/266 (39%), Positives = 161/266 (60%), Gaps = 5/266 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ R++ + V+ A +AG++AM+L QT E + E INVL++ L VG Sbjct: 1 MRPVRIIILAVAIGSAAMAGLLAMKLTRAPAPQTAEPVIEQA-PTINVLVAGKSLPVGSR 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + W A+P++ V +G I + ++P A+++L G +VR+PI G+P+R EK+ D N Sbjct: 60 LGADSIHWKAWPKDGVAEGMITEENRPAAVEDLAGAVVRLPIFTGEPVRQEKIADASNRI 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +SSLLP GKRA +I++++ GG I PND VDV+MVR VLSN+RV+AID Sbjct: 120 MSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDLYLTETVLSNVRVLAID 179 Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236 I+ E + +VG+TATLELTP Q+K + AQ +A ++SL LRS+AD + +D Sbjct: 180 QQIEEKEDGSKAVVGTTATLELTPDQSKVMTVAQQMADRISLALRSVADAQEPDTTAADY 239 Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEGI 262 + IQ+IK+G IV DG + Sbjct: 240 LLNGDGRPSIQVIKSGSIVKGDGVAL 265 >gi|325291660|ref|YP_004277524.1| components of type IV pilus [Agrobacterium sp. H13-3] gi|325059513|gb|ADY63204.1| components of type IV pilus [Agrobacterium sp. H13-3] Length = 268 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 109/268 (40%), Positives = 158/268 (58%), Gaps = 6/268 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R++ + V+ V A +AGI+AM++ V + +NVL+S +L VG Sbjct: 1 MKPSRIVILSVALVAAGLAGIVAMQISGAKQVIEKAETIIEKEPTVNVLVSSVNLPVGSR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + W +P NV D FI + PNA+ EL G +VR+P+ +G+P+R EK+VD Sbjct: 61 LNDSSVHWTPWPTGNVIDSFITEAKNPNAITELSGAVVRLPLFQGEPVRPEKVVDSSTRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +SSLLP GKRA +IS+S+ GG + PND VDV+MVR VL+N+RV+AID Sbjct: 121 MSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGDSGHFLTENVLNNVRVLAID 180 Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSS-EDSD 235 I E +VG+TATLELTP QAK + AQ +A +L+L LRS+AD + + Sbjct: 181 QQIKEGEDGTSAVVGATATLELTPEQAKIITVAQQMADRLTLALRSVADAQENDTLSAGY 240 Query: 236 VWDVQEEGKEIQIIKAGVIVNKDGEGIS 263 + + EIQ+IK+G IV G+G S Sbjct: 241 LLNGGSGQPEIQVIKSGSIVK-AGQGAS 267 >gi|150398540|ref|YP_001329007.1| SAF domain-containing protein [Sinorhizobium medicae WSM419] gi|150030055|gb|ABR62172.1| SAF domain protein [Sinorhizobium medicae WSM419] Length = 269 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 103/266 (38%), Positives = 158/266 (59%), Gaps = 5/266 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R++ + V+ A +AG++AM+L + E + E INVL++ L VG Sbjct: 1 MKPVRIIILAVAVGSAAMAGLLAMKLTRAPAARMAEPVIEQA-PTINVLVAGKSLPVGSR 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + W A+P++ + +G I + +P+A+ +L G +VR+PI G+P+R EK+ D N Sbjct: 60 LGADSIHWKAWPKDGIAEGMITEETRPSAVDDLAGAVVRLPIFTGEPVRQEKIADASNRI 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +SSLLP GKRA +I++++ GG I PND VDV+MVR VLSN+RV+AID Sbjct: 120 MSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDLYLTETVLSNVRVLAID 179 Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236 I+ E + +VG+TATLELTP Q+K + Q +A ++SL LRS+AD + +D Sbjct: 180 QQIEEKEDGTKAVVGTTATLELTPDQSKVMTVTQQMADRISLALRSVADAQEPDTTAADH 239 Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEGI 262 + IQ+IK+G IV DG + Sbjct: 240 LLNGDGQPSIQVIKSGSIVKGDGVAL 265 >gi|15887574|ref|NP_353255.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] gi|15155111|gb|AAK86040.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 268 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 109/268 (40%), Positives = 158/268 (58%), Gaps = 6/268 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R++ + V+ V A +AG++AM++ V + +NVLIS +L VG Sbjct: 1 MKPSRIVILSVALVAAGLAGLVAMQISGAKQVIEKAETIIQKEPTVNVLISSVNLPVGSR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + W +P+ NV D FI +P+A+ EL G +VR+P+ +G+PIR EK+VD Sbjct: 61 LNDSSMRWTPWPQGNVVDSFITQAKRPDAITELAGTVVRLPLFEGEPIRPEKVVDSSTRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +SSLLP GKRA +IS+S+ GG + PND VDV+MVR VL+N+RV+AID Sbjct: 121 MSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGENGNFLTENVLNNVRVLAID 180 Query: 181 HNIDSDER---VLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236 I E +VG+TATLELTP QAK + AQ +A +L+L LRS+AD + + + Sbjct: 181 QQIKEGEDGIAAVVGATATLELTPEQAKIITVAQQMADRLTLALRSVADAQENDTLSAGH 240 Query: 237 WDVQ-EEGKEIQIIKAGVIVNKDGEGIS 263 EIQ+IK+G IV G+G S Sbjct: 241 LLSGSSGQPEIQVIKSGSIVK-SGQGAS 267 >gi|239833238|ref|ZP_04681567.1| Flp pilus assembly protein CpaB [Ochrobactrum intermedium LMG 3301] gi|239825505|gb|EEQ97073.1| Flp pilus assembly protein CpaB [Ochrobactrum intermedium LMG 3301] Length = 279 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 94/267 (35%), Positives = 139/267 (52%), Gaps = 12/267 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ + A AG IAM L +P K +VL++ +L VG Sbjct: 9 MKSARLLILGVAVLAAGGAGYIAMNLATPPPAPVVAAPEAPQIKLEDVLVATENLGVGAE 68 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + W +P E + +G+I +P+A+ +L G VR+ G+PIR KL+ G Sbjct: 69 LTSQM-RWQPWPAEAISEGYITRASEPDAINQLSGATVRLQFFTGEPIRKAKLIGPGQSF 127 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNI 174 +SS+LP G RA I+ S+ GG I PND VDV+M R + T VL N+ Sbjct: 128 MSSILPPGMRAVATQINAESSAGGFILPNDFVDVIMTRRKPDNGDKSLTPFTTETVLQNV 187 Query: 175 RVIAIDHNIDSDERVL---VGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230 RV+AID I DE+ VG TATLE+TP QA+ + AQ +A +L+L LRS D+ Sbjct: 188 RVLAIDQAIQEDEQGRKVMVGQTATLEVTPEQAEIITVAQQMADRLTLALRSTQDVEDRD 247 Query: 231 SEDSDVWDVQEEGK-EIQIIKAGVIVN 256 + +D +++IK+G + Sbjct: 248 IKQADYLVSSPTRSGTVKVIKSGSVTE 274 >gi|316933040|ref|YP_004108022.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris DX-1] gi|315600754|gb|ADU43289.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris DX-1] Length = 266 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 84/267 (31%), Positives = 134/267 (50%), Gaps = 17/267 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + ++ VA +A + + + VL++K D+ +G Sbjct: 7 MNTARIVVLTIAVGAGGVAAYLA---STAGPQPQAPAEPVARMQTVEVLVAKNDIPLGQA 63 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 V P L+W +P FI QPNA +L G + R P + G+PIR +KLV G Sbjct: 64 VAPGDLQWQTWPSATASSHFIRRNDQPNATTDLAGSIARSPFIAGEPIREQKLVKANGSG 123 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSN 173 ++++LP G RA + +IS + GG I PND VDV++ + S + ++LSN Sbjct: 124 FMAAILPSGMRAISTEISPETGAGGFILPNDRVDVILSKREKNSDRPSGEQIVSEIILSN 183 Query: 174 IRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +RV+A+D I+ ++V+VG TATLEL P QA+ L A+ L+L LRS+AD S+ Sbjct: 184 VRVLAVDQTIEEKNGQKVVVGKTATLELKPEQAEYLARARQSGTLALALRSLADAGQPST 243 Query: 232 EDSDVWDVQEEGKEIQIIKAGVIVNKD 258 ++D + I++ GV Sbjct: 244 TENDAKRD-----SVNIVRYGVTTQTS 265 >gi|153008058|ref|YP_001369273.1| SAF domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151559946|gb|ABS13444.1| SAF domain protein [Ochrobactrum anthropi ATCC 49188] Length = 271 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 96/267 (35%), Positives = 139/267 (52%), Gaps = 12/267 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ + A AG IAM L +P K +VL++ +L VG Sbjct: 1 MKSARLLILGVAVLAAGGAGYIAMNLAAPPPAPVVVAPETPQMKLEDVLVATENLGVGAE 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + W +P E V DG+I +P+A+ +L G VR+ G+PIR KL+ G Sbjct: 61 LTSQM-RWQPWPAEAVSDGYITRASEPDAINQLSGATVRLQFFTGEPIRKTKLIGPGQSF 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNI 174 +SS+LP G RA I+ S+ GG I PND VDV+M R + T VL N+ Sbjct: 120 MSSILPPGMRAVATQINAESSAGGFILPNDFVDVIMTRRKPDNGDKSLTPFTTETVLQNV 179 Query: 175 RVIAIDHNIDSDERVL---VGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230 RV+AID I DE+ VG TATLE+TP QA+ + AQ +A +L+L LRS D+ Sbjct: 180 RVLAIDQAIQEDEQGRKVMVGQTATLEVTPEQAEIITVAQQMADRLTLALRSTQDVEDKD 239 Query: 231 SEDSDVWDVQEEGK-EIQIIKAGVIVN 256 + +D +++IK+G + Sbjct: 240 IKQADYLVSSPTRSGTVKVIKSGSVTE 266 >gi|115526291|ref|YP_783202.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisA53] gi|115520238|gb|ABJ08222.1| putative pilus assembly protein cpaB [Rhodopseudomonas palustris BisA53] Length = 268 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 18/263 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + ++ A +A SP + K ++VL++K +LA+G + Sbjct: 1 MNKARIVVLAIAVSAGGAAAYLASGADSPKPPPQVAQVPTAQLKTVDVLVAKTNLALGQL 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 V P+ ++W +P ++ FI PN + G + R P + G+PIR KLV G Sbjct: 61 VGPSDVQWQNWPADSANSNFIRRDQHPNFDTTVAGSIARSPFVAGEPIREVKLVRPNGSG 120 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-------VVLS 172 ++++LP G RA + +IS + GG I PND VDV++ + + +L+ Sbjct: 121 FMAAILPSGMRAISTEISPETGAGGFILPNDRVDVILSKRERNSDSESSKENVTSVTILT 180 Query: 173 NIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 N+RV+AID + V VG TATLEL P QA+ L A+ LSL LRS+ D N + Sbjct: 181 NVRVLAIDQLPKEREGQNVAVGKTATLELLPEQAEQLARARQSGTLSLALRSMVDSNVVA 240 Query: 231 SEDSDVWDVQEEGKEIQIIKAGV 253 + D K++ I K Sbjct: 241 TVTDD--------KQVTIYKGSE 255 >gi|222084468|ref|YP_002542997.1| pilus assembly protein [Agrobacterium radiobacter K84] gi|221721916|gb|ACM25072.1| pilus assembly protein [Agrobacterium radiobacter K84] Length = 270 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 102/267 (38%), Positives = 158/267 (59%), Gaps = 5/267 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R+M + V+ V A +AG++AM L ++ + +NVL++ +L VG Sbjct: 1 MKPARIMILAVAVVTAGLAGLLAMHLAGSRNIVQQVETVVEKEATVNVLVADANLPVGSR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W+A+P+ V G I +P+A+++L+G +VR+PI +G+PIR EK+ D + Sbjct: 61 LNEKSIHWMAWPQSGVVKGLITQAERPDALKDLNGAVVRLPIFEGEPIREEKVADASSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +K VLSN+R++A+D Sbjct: 121 LSSLLPSGKRAVATEISVATGAGGFILPNDRVDVIMVRKGDTQKFVTETVLSNVRILAVD 180 Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236 I+ + + +VG+TATLELTP Q K L AQ +A +L+L LRS+AD + +D Sbjct: 181 QQIEEKQDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLTLALRSVADAQQPDTTAADY 240 Query: 237 WDVQE-EGKEIQIIKAGVIVNKDGEGI 262 + G +Q+IK+G I+ Sbjct: 241 LLSGDNGGAVVQVIKSGAIIANGTAAA 267 >gi|299132282|ref|ZP_07025477.1| Flp pilus assembly protein CpaB [Afipia sp. 1NLS2] gi|298592419|gb|EFI52619.1| Flp pilus assembly protein CpaB [Afipia sp. 1NLS2] Length = 273 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 78/260 (30%), Positives = 134/260 (51%), Gaps = 15/260 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + ++ VA +A S + +VL++K D+ +G Sbjct: 1 MNTARVVVLAIAVSAGGVAAFLASG--SDQKPAPRVAAPVPQLETTDVLVAKSDIPLGQT 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 +T + ++W ++P F+ + +A++++ G +VR P L G+PIR KLV G Sbjct: 59 ITADDMKWQSWPAATASSSFVKKSERADAIKDMTGSIVRSPFLAGEPIRETKLVKANGSG 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----VRSLSERKPTVTVVLSNI 174 ++++LP G RA + +IS + GG I PNDHVDV++ R + + ++LS++ Sbjct: 119 FMAAILPSGMRAISTEISPETGAGGFILPNDHVDVLLSRRQKSREGNGESVSSEIILSDV 178 Query: 175 RVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 RV+AID ++ ++V+VG TATLEL P QA+ L ++ LSL LRS+ D N Sbjct: 179 RVLAIDQTVEEKNGQKVVVGKTATLELKPAQAETLARSRQSGTLSLALRSLVDANKPGKV 238 Query: 233 DSDVWDVQEEGKEIQIIKAG 252 + + K I + + G Sbjct: 239 E-----DASDEKLITVYRGG 253 >gi|222147183|ref|YP_002548140.1| component of type IV pilus [Agrobacterium vitis S4] gi|221734173|gb|ACM35136.1| component of type IV pilus [Agrobacterium vitis S4] Length = 269 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 103/267 (38%), Positives = 157/267 (58%), Gaps = 6/267 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN-PAKFINVLISKGDLAVGM 59 MK R++ + V+ A +AG++AM L V ++ VLI+ L VG Sbjct: 1 MKPARILILFVAVAAAGLAGLLAMGLSGQKRVVVQQSEPVVTKEPTTKVLIAAASLPVGA 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 +T + W+ +P+ ++ DGF+ + ++P A+ +L G++VR+PI +G+PIR+EK+ D + Sbjct: 61 RLTDKAMRWMDWPKTDLVDGFVTEENRPQALSDLAGLVVRLPIFEGEPIRIEKIADASSR 120 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 LS+LLP GKRA + +IS+++ GG I PND VDV+MVR VLSN+RV+AI Sbjct: 121 TLSALLPAGKRAISTEISVATGAGGFILPNDRVDVIMVRKGDNDNHLTETVLSNVRVLAI 180 Query: 180 DHNIDS---DERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235 D I+ R ++G+TATLELTP Q K L AQ +A +LSL LRS+AD + + Sbjct: 181 DQQIEEKNDGTRSVIGTTATLELTPEQTKVLTVAQQMAERLSLALRSVADAQEQDNSSAS 240 Query: 236 VWDVQE-EGKEIQIIKAGVIVNKDGEG 261 + G ++Q+IK+G IV G Sbjct: 241 YLLSGDSGGPQVQVIKSGQIVKSAGAA 267 >gi|304392385|ref|ZP_07374326.1| Flp pilus assembly protein CpaB [Ahrensia sp. R2A130] gi|303295489|gb|EFL89848.1| Flp pilus assembly protein CpaB [Ahrensia sp. R2A130] Length = 286 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 84/265 (31%), Positives = 132/265 (49%), Gaps = 12/265 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN---VLISKGDLAV 57 MK +L+ I V+ V +L AG + M + P + I VL++ D+ Sbjct: 14 MKPVQLVLIAVALVASLGAGYLVMNMSEPPAQVVVQTDNGPAIPTIPTRLVLVAVADVPQ 73 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G ++ N + + +PE V F+ P A+++ G + R G+PIR K+V Sbjct: 74 GTTLSENNMRFEEWPETGVRPSFVTQKDAPEAIKDFSGAIARSSFFAGEPIRDAKIVRSD 133 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIR 175 +G LS++LP GKRA ++I+ SS+ GG I PNDHVDV+M R + +L NIR Sbjct: 134 SGYLSAILPAGKRAVAIEITASSSAGGFILPNDHVDVIMARQQDGEQNVIITDTILQNIR 193 Query: 176 VIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAK--LSLVLRSIADLNPSSS 231 V+A+D + ++ VG T TLELT Q + + AAQ + + L+L LRS+ D + Sbjct: 194 VLALDQLIEEEEGKKSTVGETVTLELTAEQVEIVAAAQQINRRGLTLALRSVEDAEIEGT 253 Query: 232 EDSDVWDVQEEGKE---IQIIKAGV 253 + K ++II+ G Sbjct: 254 SAGRKLLSSGDRKSRGTVRIIRYGK 278 >gi|92116014|ref|YP_575743.1| Flp pilus assembly CpaB [Nitrobacter hamburgensis X14] gi|91798908|gb|ABE61283.1| Flp pilus assembly CpaB [Nitrobacter hamburgensis X14] Length = 260 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 83/262 (31%), Positives = 134/262 (51%), Gaps = 19/262 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + ++ +A +A + + + ++VL++K D+ +G Sbjct: 1 MNTARIVVLTIAVGAGGLAAYLA-----SGSDKKPQPAQTAQLQTVDVLVAKSDIPLGQA 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 VT N + W A+P + FI +P+A +L G + R P + G+PIR KLV G Sbjct: 56 VTANDVAWQAWPANSASSSFIRRDQRPDATTQLAGSIARSPFIAGEPIRELKLVSAKGSG 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSN 173 ++++LP G RA + +IS + GG I PND VDV++ + + +LSN Sbjct: 116 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSQRDKNPDHPNANSVNSETILSN 175 Query: 174 IRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +RV+A+D I+ ++V+VG TATLEL P QA+ L ++ + LSL LRS+AD N S Sbjct: 176 VRVLAVDQTIEEKNGQKVVVGKTATLELKPEQAEMLARSRQMGTLSLALRSLADANAPES 235 Query: 232 EDSDVWDVQEEGKEIQIIKAGV 253 D I I++ GV Sbjct: 236 STDDQRRD-----SINIVRYGV 252 >gi|254473714|ref|ZP_05087109.1| Flp pilus assembly protein CpaB [Pseudovibrio sp. JE062] gi|211957100|gb|EEA92305.1| Flp pilus assembly protein CpaB [Pseudovibrio sp. JE062] Length = 259 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 78/258 (30%), Positives = 125/258 (48%), Gaps = 12/258 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +RL+ ++++ +A + V+ E + +L++ DL VG Sbjct: 1 MKASRLLVLIIALSAGGLAAWL-NLSSGSREPAQTIVVQEQEIPSLEILVAAQDLKVGTA 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T L W +PEE+V DG I P A +E G +++ + G+PIR E+L++ G Sbjct: 60 LTEGDLSWAKWPEESVSDGVILRSSSPQADEEFLGQIIKAAMFSGEPIRAERLINTDKGF 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIA 178 L+++LPKGKRA + + S GG I P D VDV++ + +L NI+V+A Sbjct: 120 LAAILPKGKRAVAVPVDAVSTAGGFILPGDKVDVLISMQAKKRDEGFISETLLENIKVLA 179 Query: 179 IDHNIDSDERV---LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 ID S+ TATLEL P +A+ + A + LSL LRS AD + Sbjct: 180 IDTTTASENSEKAMSPDQTATLELFPHEAETIARATQMGTLSLSLRSAADSK----DGVK 235 Query: 236 VWDVQEEGKEIQIIKAGV 253 + G ++ +K G+ Sbjct: 236 QPPRVKGG--VKFVKYGI 251 >gi|328545280|ref|YP_004305389.1| Flp pilus assembly CpaB [polymorphum gilvum SL003B-26A1] gi|326415022|gb|ADZ72085.1| Flp pilus assembly CpaB [Polymorphum gilvum SL003B-26A1] Length = 258 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 82/264 (31%), Positives = 133/264 (50%), Gaps = 12/264 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RLM + V+ L+A + M +P QT E E + + VL++ D+ +G Sbjct: 1 MKYARLMILGVAMGAGLLAARMVMTTKAPEVPQTVE-RVEPEKQTVAVLVATRDIRLGDH 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + W +PE V G I +QP+A + + G + + PI G+PIR ++L+ G Sbjct: 60 LAASDISWAEWPENVVPQGAITRQNQPDAEELMVGQIAKAPIYSGEPIRGQRLIRTDRGF 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVIA 178 ++++LPKGKRA + + + GG I P D VDV++ RS + +L N+RV+A Sbjct: 120 MAAILPKGKRAIAVGVEAETTAGGFILPGDKVDVILTRSSDSNRSNARSETILENVRVLA 179 Query: 179 IDHNIDSDERV---LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 ID ++ TATLEL+ QA+ + AQ + +SL LRS D S ++ D Sbjct: 180 IDTTTAGEQDEKSLSPDRTATLELSLEQAEVVAQAQQIGTISLALRSAQD----SGDEMD 235 Query: 236 VWDVQEEGKEIQIIKAGVIVNKDG 259 ++ G + +K GV Sbjct: 236 GPISRKGG--VSFVKYGVSSQGST 257 >gi|85713504|ref|ZP_01044494.1| Flp pilus assembly CpaB [Nitrobacter sp. Nb-311A] gi|85699408|gb|EAQ37275.1| Flp pilus assembly CpaB [Nitrobacter sp. Nb-311A] Length = 260 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 83/262 (31%), Positives = 135/262 (51%), Gaps = 19/262 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + ++ +A +A + ++ ++VL++K D+ +G Sbjct: 1 MNTARIVVLTIAVGAGGLAAYLA-----SGSDKKPQIAQTVQLPTVDVLVAKSDIQLGQT 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 VT N + W +P ++ + FI +P+A +L G + R P + G+PIR KLV G Sbjct: 56 VTANDVAWQTWPADSASNSFIRRDRRPDATTQLAGSIARSPFIAGEPIREPKLVSAKGSG 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSN 173 ++++LP G RA + +IS + GG I PND VDV++ R S +LSN Sbjct: 116 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSRRDRNADHPSGDSVNSETILSN 175 Query: 174 IRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +RV+A+D I+ ++V+VG TATLEL P QA+ L ++ + LSL LRS+AD N S Sbjct: 176 VRVLAVDQTIEEKNGQKVVVGRTATLELKPEQAETLARSRQMGTLSLALRSLADANAPES 235 Query: 232 EDSDVWDVQEEGKEIQIIKAGV 253 D I +++ GV Sbjct: 236 NIDD-----RRRDSISVVRYGV 252 >gi|75674500|ref|YP_316921.1| Flp pilus assembly CpaB [Nitrobacter winogradskyi Nb-255] gi|74419370|gb|ABA03569.1| Flp pilus assembly CpaB [Nitrobacter winogradskyi Nb-255] Length = 275 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 135/267 (50%), Gaps = 19/267 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + ++ +A +A + + + + ++VL++K D+ +G Sbjct: 16 MNTARIVVLTIAVGAGGLAAYLA-----SGSDKETQPVQTEQLRTVDVLVAKSDIPLGQA 70 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 VT N + W +P ++ FI +P+A +L G + R P + G+PIR KLV G Sbjct: 71 VTANDVAWQTWPADSASHSFIRRDQRPDATTQLAGSIARSPFIAGEPIRELKLVSAKGSG 130 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------LSERKPTVTVVLSN 173 ++++LP G RA + +IS + GG I PND VDV++ + S VL N Sbjct: 131 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSKREKNADHASGDSVNSETVLGN 190 Query: 174 IRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +RV+AID I+ ++V+VG TATLEL P QA+ L ++ + LSL LRS+AD N Sbjct: 191 VRVLAIDQTIEEKNGQKVVVGRTATLELKPEQAETLARSRQMGTLSLALRSLADANAPEG 250 Query: 232 EDSDVWDVQEEGKEIQIIKAGVIVNKD 258 + +D I +++ GV Sbjct: 251 DIND-----RRRDSINVVRYGVPTQTS 272 >gi|27375778|ref|NP_767307.1| CtpC protein [Bradyrhizobium japonicum USDA 110] gi|27348916|dbj|BAC45932.1| CtpC protein [Bradyrhizobium japonicum USDA 110] Length = 270 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 132/270 (48%), Gaps = 18/270 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ +V++ VA +A + + + VL++K D+ +G Sbjct: 1 MNTARIVVLVIALGAGGVAAYLASGY---DNKPAPALPVAEKLPTVEVLVAKNDIQLGQA 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 V P L+W ++P FI +P A ++ G + RVP+++G+PIR +KLV G Sbjct: 58 VKPEDLQWQSWPAATASGAFIRRDSRPEAQTQIAGSIARVPLMQGEPIREQKLVRAEGSG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS----------LSERKPTVTV 169 ++++LP G RA + D++ ++ GG I PND VD+V+ R V Sbjct: 118 FMAAILPSGMRAVSTDVTAETSAGGFILPNDRVDIVLTRRLKNPDVNGPTAGNDLILSEV 177 Query: 170 VLSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 +L+NIRV+AID + +VG T TLEL P Q L AA+ L L LRSI D N Sbjct: 178 ILTNIRVLAIDQAPKEKDGQNAVVGKTVTLELKPDQVATLTAARQGGTLQLALRSIVDAN 237 Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 + D+ + G + +I+ GV V + Sbjct: 238 ATELTAEDLAIKRSGG--VNVIRYGVQVRQ 265 >gi|90425196|ref|YP_533566.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18] gi|90107210|gb|ABD89247.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18] Length = 265 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 84/270 (31%), Positives = 137/270 (50%), Gaps = 16/270 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + ++ VA +A S Q ++VL++K D+ +G Sbjct: 1 MNTARIVVLTIAVGAGGVAAYLA----SGADQQPPPAAPVAQLPTVDVLVAKSDIPLGQA 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 +TP ++W +P + FI +P+A ++ G + R + G+PIR KLV G Sbjct: 57 LTPGDVQWQVWPAATASEMFIRRNVRPDATTQIVGSIARSAFIAGEPIRDLKLVKANGSG 116 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-------SLSERKPTVTVVLS 172 ++++LP G RA + +IS + GG I PND VDV++ + S ++LS Sbjct: 117 FMAAILPSGMRAVSTEISPETGAGGFILPNDRVDVILSKREKNPDARASGDGVNSEIILS 176 Query: 173 NIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 NIRV+AID I+ ++V+VG TATLEL P Q++ L A+ LSL LRS+AD N + Sbjct: 177 NIRVLAIDQTIEEKNGQKVVVGKTATLELKPEQSEGLARARQSGTLSLALRSLADANSAV 236 Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVNKDGE 260 ++ D D + I +++ GV + Sbjct: 237 ADTPD--DRSAKRDSINVVRFGVSTPTTTQ 264 >gi|118589702|ref|ZP_01547107.1| Flp pilus assembly CpaB [Stappia aggregata IAM 12614] gi|118437788|gb|EAV44424.1| Flp pilus assembly CpaB [Stappia aggregata IAM 12614] Length = 256 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 126/263 (47%), Gaps = 10/263 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ R+ + ++ ++A + M + VL+++ D+ +G Sbjct: 1 MKIARIFVLAIAVAAGIIAFRMVMMSGNKPAEPQIVQAPVAEQTKTQVLVAQRDIPLGAK 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++P+ + W +PE+ V G + P A +E G + R PI G+P+R E+L++ G Sbjct: 61 LSPDDMSWANWPEDAVPFGAVTKEAAPLANEEYAGRIARAPIFAGEPVRPERLINTDKGF 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 ++++LPKGKRA + + ++ GG I P D VDV++ R S+ +L NIRV+AID Sbjct: 121 MAAILPKGKRAIAVSVEEETSAGGFILPGDKVDVILTRK-SDTSAVSETILENIRVLAID 179 Query: 181 HNIDSDERV---LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 ++ TATLEL+ Q++ + +Q + ++L LRS D D Sbjct: 180 STTAGEQEQKNLSPKRTATLELSLPQSEIIAQSQQIGTIALALRSAQDSAD------DAE 233 Query: 238 DVQEEGKEIQIIKAGVIVNKDGE 260 D + + +K GV + Sbjct: 234 DDGGRRRGVSYVKYGVTSQAGAQ 256 >gi|148256956|ref|YP_001241541.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1] gi|146409129|gb|ABQ37635.1| Putative pilus assembly protein cpaB [Bradyrhizobium sp. BTAi1] Length = 266 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 82/270 (30%), Positives = 133/270 (49%), Gaps = 15/270 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + ++ VA + + Q V + VL++K D+ +G Sbjct: 1 MMTARIVVLTIALGAGGVAAYLV---STSESQQPVAVAPVAQLPTVEVLVAKNDIGLGQA 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + P L W +PE + FI +P A +L G + R P + G+PIR +KLV G Sbjct: 58 IKPGDLVWQTWPE-AASNIFIRRGDRPEAANQLVGTIARAPFVIGEPIREQKLVKSDGSG 116 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVLS 172 ++++LP G RA + +IS + GG I PND VDV++ + + ++LS Sbjct: 117 FMAAILPAGMRAISTEISPETGAGGFILPNDRVDVILSKRDKNPDKPGGPDYVSSEIILS 176 Query: 173 NIRVIAIDHN--IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 N+RV+AID + +VG T TLEL P QA+ L A+ L+L LRSIAD+N + Sbjct: 177 NVRVLAIDQAPKEKEGQNTVVGKTVTLELKPEQAETLARARQSGSLALALRSIADVNAAD 236 Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVNKDGE 260 ++ + G I+II+ G+ + + Sbjct: 237 GNKNETQMARR-GNAIEIIRYGITSSLTAQ 265 >gi|188581659|ref|YP_001925104.1| Flp pilus assembly protein CpaB [Methylobacterium populi BJ001] gi|179345157|gb|ACB80569.1| Flp pilus assembly protein CpaB [Methylobacterium populi BJ001] Length = 260 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 79/257 (30%), Positives = 130/257 (50%), Gaps = 7/257 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL + ++ V A ++ +P + P VL++ +L +G Sbjct: 1 MKPARLAVLGIALVAGCGAALLMGGEKAPEPAPVVKAEPPPPIPMSEVLVAAAELPMGQT 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + P L W+ +PE+ + G ID P +++ G ++R +PIR E+L+ G+G Sbjct: 61 LKPEDLRWIPWPEQAIAPGLIDRRAAPKGLEDAVGAIIRTGFSANEPIRPERLIKAGSGF 120 Query: 121 LSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 +S++LP G RA + SS+ GG I PNDHVD++ S +L+++RV+A Sbjct: 121 MSAILPPGMRAVAITTDTRGSSSAGGFILPNDHVDIIKT-SNEGSDQFAETLLTDVRVLA 179 Query: 179 IDHNIDSDERVLV--GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 + + V TAT+ LTP QA+ + AQ V +LSLVLRSI D ++ S+ Sbjct: 180 VGQIVQDKNGANVVTAETATVALTPAQAETVTLAQKVGQLSLVLRSIQDSA-RTAALSEE 238 Query: 237 WDVQEEGKEIQIIKAGV 253 D+ EG + +++ GV Sbjct: 239 ADLPPEGP-MTVVRFGV 254 >gi|146342077|ref|YP_001207125.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS278] gi|146194883|emb|CAL78908.1| Putative pilus assembly protein cpaB [Bradyrhizobium sp. ORS278] Length = 269 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 85/272 (31%), Positives = 133/272 (48%), Gaps = 16/272 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + ++ VA + S Q V + VL++K D+ +G Sbjct: 1 MMTARIVVLTIALGAGGVAAYLV---SSSESQQPAPVAPVAQLPTVEVLVAKADIGLGQA 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + P L W +PE + FI +P A +L G + R P + G+PIR +KLV G Sbjct: 58 IKPGDLIWQTWPE-AASNIFIRRGDRPEAATQLVGSIARAPFVIGEPIREQKLVKSDGSG 116 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-------RKPTVTVVLS 172 ++++LP G RA + +IS + GG I PND VDV++ R ++LS Sbjct: 117 FMAAILPAGMRAISTEISPETGAGGFILPNDRVDVILSRREKNPDKPAAADSIVSEIILS 176 Query: 173 NIRVIAIDHN--IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 N+RV+AID + +VG T TLEL P QA+ L A+ L+L LRSIAD+N Sbjct: 177 NVRVLAIDQAPKEKEGQNTVVGKTVTLELKPEQAETLSRARQAGTLALALRSIADINAPD 236 Query: 231 SE--DSDVWDVQEEGKEIQIIKAGVIVNKDGE 260 + +++ + G I+II+ GV + + Sbjct: 237 TGKTETEQQQMARRGNAIEIIRYGVTSSLTAQ 268 >gi|91977984|ref|YP_570643.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB5] gi|91684440|gb|ABE40742.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB5] Length = 266 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 78/269 (28%), Positives = 128/269 (47%), Gaps = 17/269 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + ++ VA +A + + VL++K D+ +G Sbjct: 1 MNTARIVVLTIAIGAGAVAAYLASG--GGNQEAAGPAAPVAELPTVEVLVAKSDIPLGQP 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 V P ++W +P FI +P A +L G + R + G+PIR +KLV G Sbjct: 59 VGPGDMQWQTWPAATASANFIRRNERPEATTQLAGSIARSQFIAGEPIREQKLVKANGSG 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--------ERKPTVTVVL 171 ++++LP G RA + +IS + GG I PND VDV++ + +L Sbjct: 119 FMAAILPTGMRAVSTEISPETGAGGFILPNDRVDVILSKRDKNPDRAGSGGDVVNSETIL 178 Query: 172 SNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 SN+RV+AID I+ ++V+VG TATLEL P QA+ L A+ LSL LRS+ D N Sbjct: 179 SNVRVLAIDQAIEEKNGQKVVVGKTATLELKPEQAEFLARARQSGTLSLALRSLVDANAP 238 Query: 230 SSEDSDVWDVQEEGKEIQIIKAGVIVNKD 258 ++ + + + + +++ GV Sbjct: 239 TATEE----IGGKRDSVNVVRYGVSTPTT 263 >gi|170740622|ref|YP_001769277.1| Flp pilus assembly protein CpaB [Methylobacterium sp. 4-46] gi|168194896|gb|ACA16843.1| Flp pilus assembly protein CpaB [Methylobacterium sp. 4-46] Length = 268 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 92/265 (34%), Positives = 132/265 (49%), Gaps = 16/265 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ +R + I V+ V L A + P V ++VL++ DL +G Sbjct: 1 MRSSRALLIGVAAVTGLAAFYMMSGSPPPPPPPPVVVQAPAVPDTVDVLVAAADLPMGQT 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + P L W A+P+ +V DGFI P A+++ G VR P L G+PIR EKL+ G Sbjct: 61 LKPADLRWQAWPKGSVNDGFIQRGQNPRALEDTVGSFVRGPFLGGEPIRREKLIRANGSG 120 Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVV 170 LS++LP G RA + I S+ GG I PND VDV+ E + Sbjct: 121 FLSAILPSGMRAVAISIDARGSNTAGGFILPNDRVDVLRTYRDDEASRATTSDVQVSETI 180 Query: 171 LSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 L N+RV+A+ + ERV+ G TATLELTP Q + + AQ V +LSL LRSIAD Sbjct: 181 LQNVRVLAVGQTVQERNGERVVTGDTATLELTPAQTEQITLAQKVGQLSLALRSIADAGI 240 Query: 229 SSSEDSDVWDVQEEGKEIQIIKAGV 253 S E+ + + + +++ GV Sbjct: 241 SQPENPEPQ----KESALTVVRYGV 261 >gi|218710407|ref|YP_002418028.1| Flp pilus assembly protein CpaB [Vibrio splendidus LGP32] gi|218323426|emb|CAV19603.1| Flp pilus assembly protein CpaB [Vibrio splendidus LGP32] Length = 279 Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 109/254 (42%), Gaps = 18/254 (7%) Query: 1 MKLTRLMGI-VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M +++ + ++S VF L A A + + Q + + + V+++ ++ G Sbjct: 31 MNKSQVFLLFLLSVVFGLAAVFFAKQWM---EDQVQPTVEVEAVERHPVVVASQEIEAGT 87 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 ++ L + + + D EL G +V I G+ + + G G Sbjct: 88 IIEEQFLATKLMEVDWINENNFSDAS------ELVGKVVANTIYAGEVLHKMRFTIPGEG 141 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 L++L+P+ KRA T+ + V G + P + VD++ S S+ VL +I+V+A Sbjct: 142 STLAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILSTVSYSKNSAATRTVLKDIKVLA 201 Query: 179 IDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 +D ++ ++ TLE++P A+ L+ A+S + L LR+ ++ V Sbjct: 202 VDQTAKTNENSPIIVRAVTLEVSPKDAEKLLTAKSKGSIQLTLRNPHEVEK------KVV 255 Query: 238 DVQEEGKEIQIIKA 251 + IIK Sbjct: 256 RRYVPKPSVTIIKG 269 >gi|27376551|ref|NP_768080.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27349692|dbj|BAC46705.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 269 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 81/264 (30%), Positives = 127/264 (48%), Gaps = 17/264 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + V+ VA +A + ++VL++K D+ +G Sbjct: 4 MNRARIVVLTVAICAGGVAAYLA---SGSDNSAPPPAAPVAQLPTVDVLVAKNDIGLGQT 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 V P ++W +P FI +P + ++ G + R P ++G+PIR +KLV G Sbjct: 61 VKPEDVQWQTWPAATASATFIRRNERPEGVTQVTGSIARAPFIQGEPIRDQKLVKAEGSG 120 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--------TVTVVL 171 ++++LP G RA + +IS + GG I PND VDV++ R L P T ++L Sbjct: 121 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVLLTRRLKNPDPSNGAPDIVTSEIIL 180 Query: 172 SNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 +NIRV+AID + +VG T TLEL P Q L AA+ LSL LRSI D Sbjct: 181 ANIRVLAIDQAPKEKDGQNTVVGKTVTLELNPTQTATLSAARQSGTLSLALRSIVD---V 237 Query: 230 SSEDSDVWDVQEEGKEIQIIKAGV 253 + + D + + II+ G+ Sbjct: 238 KMSEITLDDSAQRRDGVSIIRYGI 261 >gi|260431083|ref|ZP_05785054.1| Flp pilus assembly protein CpaB [Silicibacter lacuscaerulensis ITI-1157] gi|260414911|gb|EEX08170.1| Flp pilus assembly protein CpaB [Silicibacter lacuscaerulensis ITI-1157] Length = 293 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 108/263 (41%), Gaps = 17/263 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP----------AKFINVLI 50 M+ + ++V A A +A ++ + + VL+ Sbjct: 1 MRAVFGLVLIVGIALAGGAVYLARNYITEYQNALARERQAAQEALASAKVDVVPTVGVLV 60 Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + L G +T + V +PE V +G ++ + V + K + I Sbjct: 61 ANRPLKYGERLTEEDIRVVDWPENAVPEGAFTEMAALFPETGANERFVLRAMEKDEAIME 120 Query: 111 EKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RK 164 K+ G GL+S L KG RA + + ++S V G ++P D VDV SLS R Sbjct: 121 VKVTKPGELAGLTSRLEKGMRAFAISVDVASGVSGFLRPGDVVDVYWTGSLSGAVEGARG 180 Query: 165 PTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 ++ +NI +IA+D + SD + T T+ TP Q AL AQ+ +LSL L + Sbjct: 181 EITRLIQTNIELIAVDQSAGSDVTGTTIARTVTVAATPEQVAALAQAQNTGRLSLALVGV 240 Query: 224 ADLNPSSSEDSDVWDVQEEGKEI 246 D +S+ + D + + + Sbjct: 241 HDETVASAIEVDQRKLLGIKEAV 263 >gi|110679398|ref|YP_682405.1| pilus assembly domain-containing protein [Roseobacter denitrificans OCh 114] gi|109455514|gb|ABG31719.1| pilus assembly domain protein [Roseobacter denitrificans OCh 114] Length = 282 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 6/247 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT--ENPAKFINVLISKGDLAVG 58 M++ M ++ A A +A + + + V ++ L G Sbjct: 1 MRVIFGMVLLAGVALAGGAVYMAKGYIGQYQAELARAQQMHSAIVPTQQVFVATRHLRYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + P + V +P + G D+ + L+ P+ + + K+ + G Sbjct: 61 DTLKPEDVRAVNWPVNAIPQGVFTDIAALFPEGTDEPRLIIRPMEPSEAVLAVKITEPGE 120 Query: 119 G-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---SLSERKPTVTVVLSNI 174 GL++ L KG RA + + ++S V G ++P D VDV + + R+ ++ + + Sbjct: 121 DIGLTTRLEKGMRAFAIRVDVASGVSGFLRPGDKVDVYWTGGVQTGNGREDVTKLIQTAV 180 Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 R+IA+D D + T T+ TP Q AL AQS LSL L + D Sbjct: 181 RLIAVDQIDDQMNGARIARTVTVAATPEQVAALAQAQSTGNLSLSLVGVGDDEELDEIKV 240 Query: 235 DVWDVQE 241 + + Sbjct: 241 NQVSLLG 247 >gi|86748908|ref|YP_485404.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris HaA2] gi|86571936|gb|ABD06493.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris HaA2] Length = 265 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 82/269 (30%), Positives = 133/269 (49%), Gaps = 16/269 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ +V++ VA +A + + VL++K D+ +G Sbjct: 1 MNTARIVVLVIAVGAGAVAAYLASGI--GGQETAGPTAPVAQLATVEVLVAKSDIPLGQP 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 V P+ ++W +P FI +P+A +L G + R P + G+PIR +KLV G Sbjct: 59 VGPSDVQWQTWPAATASSNFILRSERPDASVQLAGSIARSPFIAGEPIREQKLVKSNGSG 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-------ERKPTVTVVLS 172 ++++LP G RA + +IS + GG I PND VDV++ + ++LS Sbjct: 119 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSKRDQNPDRVKGGDVVNSEIILS 178 Query: 173 NIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 NIR++AID ++ ++V+VG TATLEL P QA+ L A+ LSL LRS+AD N Sbjct: 179 NIRILAIDQTVEEKNGQKVVVGKTATLELKPDQAEFLARARQSGTLSLALRSLADANAP- 237 Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259 + ++ + I +I+ GV Sbjct: 238 ---ARTEEIGGKRDSINVIRFGVSTQTTT 263 >gi|220922778|ref|YP_002498080.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] gi|219947385|gb|ACL57777.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] Length = 267 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 90/265 (33%), Positives = 134/265 (50%), Gaps = 17/265 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R + I ++ V L A + M P A ++VL++ DL +G + Sbjct: 1 MKSSRALLIGIAAVTGLAAFYM-MSGSPPPPPPVVAPPPPMVADTVDVLVAAADLPMGQI 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + P L W A+P+ ++ DGF+ NA+++ G VR P L G+PIR EKL+ G Sbjct: 60 LKPGDLRWQAWPKTSLNDGFLQREQNANALEDTLGSFVRSPFLGGEPIRREKLIKANGSG 119 Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSE-------RKPTVTVV 170 LS++LP G RA + I S+ GG I PND VDV+ E + Sbjct: 120 FLSAILPSGMRAVAISIDARGSNTAGGFILPNDRVDVLRTHRDEEAARATKSDVQVTETI 179 Query: 171 LSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 L N+RV+A+ + ERV+ G TATLELTP QA+ + AQ V +LSL LRS++D Sbjct: 180 LKNVRVLAVGQTVQERNGERVVTGDTATLELTPAQAEQITLAQKVGQLSLALRSLSDAGQ 239 Query: 229 SSSEDSDVWDVQEEGKEIQIIKAGV 253 E + E+ + +++ GV Sbjct: 240 VQPESPET----EKEPALTVVRYGV 260 >gi|307943144|ref|ZP_07658489.1| Flp pilus assembly protein CpaB [Roseibium sp. TrichSKD4] gi|307773940|gb|EFO33156.1| Flp pilus assembly protein CpaB [Roseibium sp. TrichSKD4] Length = 256 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 73/264 (27%), Positives = 119/264 (45%), Gaps = 12/264 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL + V+ L+A + S + +T + VL++ D+ +G Sbjct: 1 MKYARLAILGVAVGAGLLAARLVS--TSAPEPEPVAEVTAPTIEKTEVLVASSDITLGSK 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W ++P E + G + P AM+ L G + R PI G+PIR E+L+ G Sbjct: 59 LGGSDFTWASWPTEALPAGVLTKDDDPEAMERLVGQVTRTPIFSGEPIREERLIRTDKGF 118 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-SLSERKPTVTVVLSNIRVIAI 179 ++++LPKG RA + + + GG I P D VDV++ + S +L N+RV+AI Sbjct: 119 MAAILPKGMRAIAVSVEAETTAGGFILPGDKVDVILTKASGETGSAVSNTILENVRVLAI 178 Query: 180 DHNIDSDERV---LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 D D+ TATLEL Q++ + AQ V +SL LRS D + Sbjct: 179 DAVTAGDQDEKNVSPDRTATLELNLPQSEIISQAQQVGTISLALRSAQDSAD------NA 232 Query: 237 WDVQEEGKEIQIIKAGVIVNKDGE 260 + + +K G+ + Sbjct: 233 EQTVRRKRAVNFVKYGLTSQAASQ 256 >gi|56697918|ref|YP_168289.1| CpaB family protein [Ruegeria pomeroyi DSS-3] gi|56679655|gb|AAV96321.1| CpaB family protein [Ruegeria pomeroyi DSS-3] Length = 305 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 104/255 (40%), Gaps = 12/255 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58 M+ + ++V A A ++A +S + E V ++ L G Sbjct: 18 MRAVFGLVLIVGIALAGGAVMMARNYISAYQNELARERQARAQIVPTKTVYVASRPLRYG 77 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117 +T + V +PE + +G D ++ + V + K + I K+ Sbjct: 78 ERLTKEDVRAVNWPENAIPEGTFLDAAMLFPERQEENRYVLRAMEKDEAIMAIKVTKPGE 137 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTV 169 + GL+S L +G RA + + ++S V G ++P D VDV LS + + Sbjct: 138 DAGLTSQLARGMRAFAIKVDVTSGVSGFLRPGDRVDVYWTGGLSGATGPLEGMQGEITRL 197 Query: 170 VLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 + +NI+++AID D + T T+ P Q +L AQ+ +L+L L D Sbjct: 198 IQTNIQIVAIDQISGGDVTGANIARTVTVAALPQQVASLAQAQTTGRLTLALVGADDDTI 257 Query: 229 SSSEDSDVWDVQEEG 243 +++ + D + G Sbjct: 258 AAAVEVDQRMLLGLG 272 >gi|146338124|ref|YP_001203172.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS278] gi|146190930|emb|CAL74935.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. ORS278] Length = 248 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 13/250 (5%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 + A Q + ++VL++K D+ +G + P +L+W ++P F Sbjct: 1 MAAYLASGSDDRQAQVAAPAPQVPTVDVLVAKADIGLGQSIKPELLQWQSWPASTASSSF 60 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISIS 139 I +P E+ G + R P + G+PIR +KLV G ++++LP G RA + +IS Sbjct: 61 IRRNERPEGQNEVTGTIARAPFIAGEPIREQKLVKSDGSGFMAAILPAGMRAVSTEISPE 120 Query: 140 SAVGGMIKPNDHVDVVMVRSLS-------ERKPTVTVVLSNIRVIAIDHNIDSDER--VL 190 + GG I PND VDV++ + + ++L+NIRV+AID + + Sbjct: 121 TGAGGFILPNDRVDVILSKRERNPDQPNAGDVVSSEIILANIRVLAIDQAPKEKDGQTTV 180 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 VG T TLEL P QA+ L A+ LSL LRSIAD + + D + G + +++ Sbjct: 181 VGKTVTLELKPEQAETLARARQTGTLSLALRSIAD---VNMAEQRSDDNRRRGDSVAVVR 237 Query: 251 AGVIVNKDGE 260 G+ + Sbjct: 238 FGIPSTMTTQ 247 >gi|254502627|ref|ZP_05114778.1| Flp pilus assembly protein CpaB [Labrenzia alexandrii DFL-11] gi|222438698|gb|EEE45377.1| Flp pilus assembly protein CpaB [Labrenzia alexandrii DFL-11] Length = 256 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 76/258 (29%), Positives = 126/258 (48%), Gaps = 12/258 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R++ + ++ ++A + M + Q VL + D+ +G Sbjct: 3 MKFARILVLAIAVAAGVLAFRMVM-MSGGSSDQASNAPVPLEQAKGQVLTAATDILLGAK 61 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + W +PEE V G + P+A +EL G + + PI KG+PIR E+L++ G Sbjct: 62 LTAEDMVWTDWPEEAVPIGAVTKQVNPSASEELMGQIAKTPIFKGEPIRPERLINTDKGF 121 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +S++LPKGKRA + + + GG I P D VDV++ R + +L NIRV+AID Sbjct: 122 MSAILPKGKRAIAVSVEAETTAGGFILPGDKVDVILTRRTDDT-AISETILENIRVLAID 180 Query: 181 HNIDSDERV---LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 ++ TATLELT Q++ + +Q V ++L LRS D +D Sbjct: 181 TTTAGEQDQKNLSPQRTATLELTLGQSEVVAQSQQVGAIALALRSAQDS-------ADDA 233 Query: 238 DVQEEGKEIQIIKAGVIV 255 + E + + ++K G+ Sbjct: 234 EPTETRRGVNLVKYGITS 251 >gi|209551758|ref|YP_002283675.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537514|gb|ACI57449.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 271 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 110/267 (41%), Positives = 158/267 (59%), Gaps = 6/267 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ V A +AG +AM++ V T+ +N+L+S +LAVG Sbjct: 1 MKPARLIILAVAVVAAGLAGFLAMQMAGNGGVVTQVQSVIEKEPTVNILVSSANLAVGER 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W+ +P+ V G I + +P+A+++L G +VR+PI +G+PIR EK+ D + Sbjct: 61 LDDKSVHWMPWPQGGVVPGLITEADKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSNSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +E K VLSN+RV+AI Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180 Query: 180 DHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235 D I D + +VG+TATLELTP Q K L AQ +A +LSL LRS+AD + +D Sbjct: 181 DQQIQEKDDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240 Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDGEG 261 + G IQ+IK+G IV Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDASAA 267 >gi|163757626|ref|ZP_02164715.1| pilus assembly protein [Hoeflea phototrophica DFL-43] gi|162285128|gb|EDQ35410.1| pilus assembly protein [Hoeflea phototrophica DFL-43] Length = 269 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 106/264 (40%), Positives = 158/264 (59%), Gaps = 8/264 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVG 58 MK R++ + V+ + A +AG +AM L +P E T ++VL+ L VG Sbjct: 1 MKPARVVIMAVAVLAAGLAGYLAMNLTAPTVQVNEISATPVIEKMPTLDVLVVSASLPVG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + +EW +PE+ V +G I +P+A+ EL G +VR+P+ G+P+R EK+VD + Sbjct: 61 ARLNEETMEWKGWPEDAVTEGLIRRESRPDAITELTGSIVRLPLFTGEPLRPEKIVDSSS 120 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVTVVLSNIRVI 177 +SSLLP GKRA +IS++++ GG I PND VDV+MVR + V+LSNIRV+ Sbjct: 121 RIMSSLLPAGKRAIATEISVATSAGGFILPNDRVDVIMVRRKTEQEGFLTEVILSNIRVL 180 Query: 178 AIDHNIDSD---ERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSED 233 AID I+ D R VG+TATLELTP Q+K + AQ +A +L+L LRS+AD+ ++ Sbjct: 181 AIDQRIEEDAQGNRTAVGTTATLELTPDQSKIITVAQQMADRLTLALRSVADVQEPDTDG 240 Query: 234 SDVWDVQEEG-KEIQIIKAGVIVN 256 + E+G IQ+I++G I N Sbjct: 241 AKHLLSGEDGTSAIQLIRSGAITN 264 >gi|163851902|ref|YP_001639945.1| Flp pilus assembly protein CpaB [Methylobacterium extorquens PA1] gi|254561620|ref|YP_003068715.1| pilus assembly protein cpaB [Methylobacterium extorquens DM4] gi|163663507|gb|ABY30874.1| Flp pilus assembly protein CpaB [Methylobacterium extorquens PA1] gi|254268898|emb|CAX24859.1| pilus assembly protein cpaB [Methylobacterium extorquens DM4] Length = 261 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 133/258 (51%), Gaps = 8/258 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRL-VSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK RL + ++ V A ++ +P + P VL++ +L +G Sbjct: 1 MKPARLAVLGIALVAGCGAALLMQGEEKAPEPAPVAKAEPVAPVPMSEVLVAAAELPMGQ 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + P L W+A+PE+ + G I+ P +++ G ++R +PIR E+LV G+G Sbjct: 61 TLKPEDLRWIAWPEQAISPGLIERRAAPKGLEDSVGAIIRTGFSANEPIRPERLVKAGSG 120 Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 +S++LP G RA + SS+ GG + PNDHVDV+ S + +L+++RV+ Sbjct: 121 FMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKT-SNEGTEQFAETLLTDVRVL 179 Query: 178 AIDHNIDSDERVLV--GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+ + V TATL LTP QA+ + AQ V +LSLVLRSI D + ++ S+ Sbjct: 180 AVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQD-SARTAALSE 238 Query: 236 VWDVQEEGKEIQIIKAGV 253 D+ EG + +++ GV Sbjct: 239 EADMPPEGP-MTVVRFGV 255 >gi|163733543|ref|ZP_02140986.1| pilus assembly domain protein [Roseobacter litoralis Och 149] gi|161393331|gb|EDQ17657.1| pilus assembly domain protein [Roseobacter litoralis Och 149] Length = 276 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 6/241 (2%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVGMVVTPN 64 M ++ A A +A + + + V ++ L G + P Sbjct: 1 MVLLAGVALAGGAVYMAKGYIGQYQAELARAQQMQSAIVPTQPVFVATRHLRYGDTLNPE 60 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSS 123 + V +P + DG D+ + L+ P+ + + K+ + G GL++ Sbjct: 61 DVRAVNWPTNAIPDGIFTDIAVLFPEGTDEPRLIIRPMEPNEALLAVKITEPGEDIGLTT 120 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---SLSERKPTVTVVLSNIRVIAID 180 L KG RA + + +++ V G ++P D VDV + + R+ ++ S +R+IA+D Sbjct: 121 RLEKGMRAFAIRVDVATGVSGFLRPGDKVDVYWTGGVQTSNGREDVTKLIQSAVRLIAVD 180 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 D + T T+ +P Q AL AQS LSL L D + + Sbjct: 181 QTEDQMNGARIARTVTVAASPEQVAALAQAQSTGNLSLSLVGAGDDAELDEIKVNQVSLL 240 Query: 241 E 241 Sbjct: 241 G 241 >gi|148258234|ref|YP_001242819.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1] gi|146410407|gb|ABQ38913.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. BTAi1] Length = 249 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 12/250 (4%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 + A + + VL++K D+ +G + P L+W ++P F Sbjct: 1 MAAYLASGSDDRPAPVAAVAPTVETVEVLVAKSDINLGQSLKPEHLQWQSWPAATTSSSF 60 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISIS 139 I + E+ G++ R P + G+PIR +KLV G ++++LP G RA + +IS Sbjct: 61 IQRKDRSKGDAEVTGMIARAPFIAGEPIREQKLVKADGSGFMAAILPAGMRAVSTEISPE 120 Query: 140 SAVGGMIKPNDHVDVVMVRSLS-------ERKPTVTVVLSNIRVIAIDHNIDSDER--VL 190 + GG I PND VDV++ + + ++LSNIRV+AID + + Sbjct: 121 TGAGGFILPNDRVDVLLSKRERNPEQPNAGDVISSEIILSNIRVLAIDQAPKEKDGQTTV 180 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 VG T TLEL P QA+ L A+ LSL LRSIAD+N + + + + + G + +I+ Sbjct: 181 VGKTVTLELKPEQAETLARARQSGTLSLALRSIADINVAENRSDE--NSRRRGDSVAVIR 238 Query: 251 AGVIVNKDGE 260 G+ + Sbjct: 239 FGIPSTMTTQ 248 >gi|148976663|ref|ZP_01813350.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3] gi|145964014|gb|EDK29272.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3] Length = 249 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 109/254 (42%), Gaps = 18/254 (7%) Query: 1 MKLTRLMGI-VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M +++ + ++S VF L A A + + Q + I + V+++ ++ G Sbjct: 1 MNKSQVFLLFLLSVVFGLAAVFFAKQWM---DDQVQPTIEVEKVERHPVVVASQEIEAGT 57 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 V+ L + + + D +EL G +V I G+ + + G G Sbjct: 58 VIEEQFLTTKLMEVDWINENNYSD------KEELIGKVVANTIYAGEVLHKLRFTVPGEG 111 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 L++L+P+ KRA T+ + V G + P + VD++ S + VL +I+V+A Sbjct: 112 STLAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILNTVSYGKNSAATQTVLKDIKVLA 171 Query: 179 IDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 +D + E ++ TLE+TP A+ L+ A+S + L LR+ ++ V Sbjct: 172 VDQTARTKENSPIIVRAVTLEVTPKDAEKLLTAKSKGSIQLTLRNPHEVEK------KVV 225 Query: 238 DVQEEGKEIQIIKA 251 + IIK Sbjct: 226 RRYVPRPSVTIIKG 239 >gi|240139025|ref|YP_002963500.1| pilus assembly protein cpaB [Methylobacterium extorquens AM1] gi|240008997|gb|ACS40223.1| pilus assembly protein cpaB [Methylobacterium extorquens AM1] Length = 261 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 133/258 (51%), Gaps = 8/258 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRL-VSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK RL + ++ V A ++ +P + P VL++ +L +G Sbjct: 1 MKPARLAVLGIALVAGCGAALLMQGEEKAPEPAPVAKAEPVVPVPMSEVLVAAAELPMGQ 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + P L W+A+PE+ + G I+ P +++ G ++R +PIR E+LV G+G Sbjct: 61 TLKPEDLRWIAWPEQAISPGLIERRAAPKGLEDSVGAIIRTGFSANEPIRPERLVKAGSG 120 Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 +S++LP G RA + SS+ GG + PNDHVDV+ S + +L+++RV+ Sbjct: 121 FMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKT-SNEGTEQFAETLLTDVRVL 179 Query: 178 AIDHNIDSDERVLV--GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+ + V TATL LTP QA+ + AQ V +LSLVLRSI D + ++ S+ Sbjct: 180 AVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQD-SARTAALSE 238 Query: 236 VWDVQEEGKEIQIIKAGV 253 D+ EG + +++ GV Sbjct: 239 EADMPPEGP-MTVVRFGV 255 >gi|209886527|ref|YP_002290384.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5] gi|209874723|gb|ACI94519.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5] Length = 272 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 14/234 (5%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 E + +VL++K D+ +G + + W +P FI + Sbjct: 24 SGSDQKPAEVAAPAPKLETTDVLVAKADIPLGQTIKAEDMTWQTWPAATASSSFIRKSER 83 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGM 145 +A+ +L G + R P L G+PIR KLV G ++++LP G RA + +IS + GG Sbjct: 84 ASAVADLTGSIARSPFLAGEPIRETKLVKSNGSGFMAAILPSGMRAVSTEISPETGAGGF 143 Query: 146 IKPNDHVDVVMVRS------LSERKPTVTVVLSNIRVIAIDHNIDS--DERVLVGSTATL 197 I PND VDV++ R + ++LS++RV+AID I+ ++V+VG TATL Sbjct: 144 ILPNDRVDVMLSRRQRNPDSNGGEMVSSEIILSDVRVLAIDQTIEEKNGQKVVVGKTATL 203 Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 EL P QA+ L ++ L+L LRS+ D N + + + K I + + Sbjct: 204 ELKPAQAEMLTRSRQSGTLTLALRSLVDANKQNEVEEAT-----DEKVITVYRG 252 >gi|110636320|ref|YP_676528.1| pilus assembly protein cpaB [Mesorhizobium sp. BNC1] gi|110287304|gb|ABG65363.1| pilus assembly protein cpaB [Chelativorans sp. BNC1] Length = 270 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 95/266 (35%), Positives = 144/266 (54%), Gaps = 11/266 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQT-EEVITENPAKFINVLISKGDLAVGM 59 M +R++ + V+ A+ AG +A L SP V + P +VL+ D+ VG Sbjct: 1 MNKSRIVILGVAVAAAIGAGYLAKNLASPQKVAAVAPTPEKPPVSLTDVLVLTQDVPVGE 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + + W A+P E+V D FI +P+A++ + + R+P+ G+P+R KLV G+ Sbjct: 61 PINGAAM-WQAWPAESVMDAFITREREPDALETIRNAVARLPLFAGEPVRRSKLVGEGDS 119 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIR 175 L+++LP GKRA I+ ++ GG I PND VDV+M R E VL NIR Sbjct: 120 FLAAILPPGKRAVATRIAADTSAGGFILPNDRVDVIMTRRADEGSSPNGFITETVLENIR 179 Query: 176 VIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSS 231 V+AID I DE RV +G TATLELTP +A+ + AQ +A +L+L LRS+AD N ++ Sbjct: 180 VLAIDQTIHEDEEGRRVKLGETATLELTPEEAEVITVAQQLADRLTLSLRSVADSNEEAT 239 Query: 232 EDSDVWDVQEE-GKEIQIIKAGVIVN 256 + G +++IK+G Sbjct: 240 DRGLHLVTGTGRGDSVRLIKSGETSI 265 >gi|126729099|ref|ZP_01744913.1| CpaB family protein [Sagittula stellata E-37] gi|126710089|gb|EBA09141.1| CpaB family protein [Sagittula stellata E-37] Length = 288 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 103/255 (40%), Gaps = 11/255 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVG 58 M+L + ++ A A +A + + + + + +S +A G Sbjct: 1 MRLVFGLVLLAGIGLAGFAVYMAQNYIGAYETALVQARQQTHVSVPTKQIYVSARPIAYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 +T + +PEE + +G D P + ++ + I + I K+ G Sbjct: 61 QEITEEDIRLAPWPEEIMPEGIF-DEETPLLTENMEPRVALRAIDAFEAIVPSKVSQPGG 119 Query: 119 -GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVL 171 GL+ L G+ A + + ++S V G ++P D VDV + R ++L Sbjct: 120 SAGLTHYLKPGESAFAIRVDVASGVSGFLRPGDRVDVYWTGRVDSRDPNMPRGEVTKMIL 179 Query: 172 SNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + IR+IAID N ++D + T T+ T Q L AQS +L+L L S + + Sbjct: 180 AGIRLIAIDQNSEADTSGTSIARTVTVAATREQTLVLTHAQSTGQLTLSLISQNEDGEAI 239 Query: 231 SEDSDVWDVQEEGKE 245 + + D + + Sbjct: 240 TTEVDQMSMLGLTRA 254 >gi|86147468|ref|ZP_01065780.1| Flp pilus assembly protein CpaB [Vibrio sp. MED222] gi|85834761|gb|EAQ52907.1| Flp pilus assembly protein CpaB [Vibrio sp. MED222] Length = 249 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 18/254 (7%) Query: 1 MKLTRLMGI-VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M +++ + ++S VF L A A + + Q + I + V+++ ++ G Sbjct: 1 MNKSQVFLLFLLSVVFGLAAVFFAKQWM---DNQVQPTIEVEEVERHPVVVASQEIEAGT 57 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 V+ L + + + D + EL G +V I G+ + + G G Sbjct: 58 VIEDQYLTTKLMEVDWINENNYSDQN------ELIGKVVANTIYAGEVLHKLRFTVPGEG 111 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 L++L+P+ KRA T+ + V G + P + VD++ S + VL +I+V+A Sbjct: 112 STLAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILNTVSYGKNSAATRTVLKDIKVLA 171 Query: 179 IDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 +D + E ++ TLE+TP A+ L+ A+S + L LR+ +++ V Sbjct: 172 VDQTARTKENSPIIVRAVTLEVTPKDAEKLLTAKSKGSIQLTLRNPHEVDK------KVV 225 Query: 238 DVQEEGKEIQIIKA 251 + IIK Sbjct: 226 RRYVPRPSVTIIKG 239 >gi|89053489|ref|YP_508940.1| Flp pilus assembly CpaB [Jannaschia sp. CCS1] gi|88863038|gb|ABD53915.1| Flp pilus assembly CpaB [Jannaschia sp. CCS1] Length = 274 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 102/250 (40%), Gaps = 3/250 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M++ ++ + V A A IA + E + + +++ L G Sbjct: 1 MRIVFILVLAVGVGLAGFAVSIAKDRFDQYQTALAE-QRDAILPTVELIVVSRQLRYGEQ 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 +TP+ ++ + +P E+V G + + E V + + +PI L K+ + Sbjct: 60 ITPDDVQLIRWPAEHVPFGAFTTMDELFPPDEEGARTVLRMMEQDEPILLVKVTAPGEDA 119 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 G++S L G RA + + ++S V G ++P D VDV ++ +N+++IAI Sbjct: 120 GVASRLEAGMRAIALRVDVNSGVSGFLRPGDRVDVYWTGPGRNGDTVTRLIRANVQLIAI 179 Query: 180 DHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D D + T T+ P AL AQ L+L L + D + Sbjct: 180 DQIADEQRNSPTIARTITVTARPEDVAALTQAQGSGSLTLALVGVGDETEQGEVEVSTSA 239 Query: 239 VQEEGKEIQI 248 + E +E+ + Sbjct: 240 LLGEIEEVAV 249 >gi|99082185|ref|YP_614339.1| Flp pilus assembly CpaB [Ruegeria sp. TM1040] gi|99038465|gb|ABF65077.1| pilus assembly protein [Ruegeria sp. TM1040] Length = 287 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 11/255 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVG 58 M+ + ++V A A ++A + + + + +NV ++ L G Sbjct: 1 MRAAFGLVLIVGVALAGGAVMMAKNYIEAYQHALAQERSNRDAAVPTVNVFVANKTLTYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDR- 116 +T + VA+PE + +G + + V + K +P+ K+ Sbjct: 61 EELTKESVRSVAWPENALPEGVFHEEAELFPSDSPKDARFVLRTMEKNEPLLAVKVTAPG 120 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVV 170 + G++S L KG RA + + ++S V G ++P D VDV ++ Sbjct: 121 EDAGITSRLEKGMRAFAIRVDVASGVSGFLRPGDRVDVYWSGQPPARGGQELGGEVTRLI 180 Query: 171 LSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 SNI +IA+D D ++ T T++ P + L AQ+ +LSL L D + Sbjct: 181 QSNIELIAVDQMSGGDFSSAIIARTVTVKAQPEEVARLAQAQATGRLSLALVGAQDDTIA 240 Query: 230 SSEDSDVWDVQEEGK 244 S + D + G Sbjct: 241 SLVEVDQRALFGLGD 255 >gi|218530653|ref|YP_002421469.1| Flp pilus assembly protein CpaB [Methylobacterium chloromethanicum CM4] gi|218522956|gb|ACK83541.1| Flp pilus assembly protein CpaB [Methylobacterium chloromethanicum CM4] Length = 261 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 79/258 (30%), Positives = 130/258 (50%), Gaps = 8/258 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRL-VSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK RL + ++ V A ++ +P V + P VL++ +L +G Sbjct: 1 MKPARLAVLGIALVAGCGAALLMQGEEKAPEAVPVAKAEPVAPVPMSEVLVAAAELPMGQ 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + P L W+A+PE+ + G I+ P +++ G ++R +PIR E+LV G+G Sbjct: 61 TLKPEDLRWLAWPEQAISPGLIERRAAPKGLEDAVGAIIRTGFSANEPIRPERLVKAGSG 120 Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 +S++LP G RA + SS+ GG + PNDHVDV+ S + +L+++RV+ Sbjct: 121 FMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKT-SNEGTEQFAETLLTDVRVL 179 Query: 178 AIDHNIDSDERVLV--GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+ + V TATL LTP QA+ + AQ V +LSLVLRSI D +++ + Sbjct: 180 AVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQDSARTAALFEE 239 Query: 236 VWDVQEEGKEIQIIKAGV 253 E + +++ GV Sbjct: 240 AGMPPEG--PMTVVRFGV 255 >gi|86137992|ref|ZP_01056568.1| CpaB family protein [Roseobacter sp. MED193] gi|85825584|gb|EAQ45783.1| CpaB family protein [Roseobacter sp. MED193] Length = 286 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 108/255 (42%), Gaps = 10/255 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVG 58 M+ + ++V A A ++A +S + + +V ++ L G Sbjct: 1 MRAVFGLVLIVGVALAGGAVMMAKNYISAYQTELARERANRGEVIPTTDVFVATKQLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDR- 116 +T + + V +P + + +G + +V + K + + KL + Sbjct: 61 ERLTEDAVRKVRWPSDAIPEGAFTTLETLFPPANPGDLRVVLRTMEKDEALLEAKLTNPG 120 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTVVL 171 + G++S L +G RA + + +SS V G ++P DHVDV + + + ++ Sbjct: 121 QDAGITSQLQRGMRAFAISVDVSSGVSGFLRPGDHVDVYWTGGVRDGSGGRGQEITRLIE 180 Query: 172 SNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 +I +IA+D + ++ + T T+ + P Q AL AQ+ +LSL L D +S Sbjct: 181 PSIELIAVDQSASTETNGATIARTVTVAVQPEQVAALAQAQTTGRLSLSLVGAGDDTVAS 240 Query: 231 SEDSDVWDVQEEGKE 245 + + + G++ Sbjct: 241 VIEVNQRSLLGLGEQ 255 >gi|163738371|ref|ZP_02145786.1| CpaB family protein [Phaeobacter gallaeciensis BS107] gi|161388292|gb|EDQ12646.1| CpaB family protein [Phaeobacter gallaeciensis BS107] Length = 286 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 10/253 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVG 58 M+ + ++V A A ++A ++ + + ++V I+ L G Sbjct: 1 MRAVFGLVLIVGVALAGGAVMMAKNYITAYQNELARERASRGENIPLVDVFIANDQLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDR- 116 +T + + V +PE + +G + Q D +V + K + I K+ Sbjct: 61 ERLTRDSVRSVRWPENAIPEGAFLTMDALFPPQYPDDLRVVLRRMEKDEAILAVKVTKPG 120 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVL 171 + G++S L KG RA + + +SS V G ++P DHVDV SL++ ++ Sbjct: 121 EDAGITSRLAKGMRAFAIRVDVSSGVSGFLRPGDHVDVYWTGSLNDQNGGRNGEFTRLIQ 180 Query: 172 SNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 +NI +IA+D D + ++ T T + P Q AL AQS +LSL L D +S Sbjct: 181 TNIELIAVDQTAGGDLDGAVIARTVTAAVRPEQVAALAQAQSTGRLSLSLVGAGDDTVAS 240 Query: 231 SEDSDVWDVQEEG 243 + D + G Sbjct: 241 VIEVDQRSLLGLG 253 >gi|86355863|ref|YP_467755.1| pilus assembly protein [Rhizobium etli CFN 42] gi|86279965|gb|ABC89028.1| pilus assembly protein [Rhizobium etli CFN 42] Length = 271 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 114/267 (42%), Positives = 163/267 (61%), Gaps = 6/267 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ V A +AG++AMR+ V T+ +N+L+S +L VG Sbjct: 1 MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIKKEPTVNILVSNKNLPVGAR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + W+A+P+E V GFI + +P+A+++L G +VR+PI +G+PIR EK+ D + Sbjct: 61 LGDDSVHWMAWPKEGVVQGFITEADRPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +E K VLSN+RV+AI Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180 Query: 180 DHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235 D I D + +VG+TATLELTP Q K L AQ +A +LSL LRS+AD + +D Sbjct: 181 DQQIQEKDDGSKTVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240 Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDGEG 261 + G IQ+IK+G IV G Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDAGAA 267 >gi|84387246|ref|ZP_00990267.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01] gi|84377893|gb|EAP94755.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01] Length = 249 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 109/254 (42%), Gaps = 18/254 (7%) Query: 1 MKLTRLMGI-VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M +++ + ++S VF L A A + + Q + + + V+++ ++ G Sbjct: 1 MNKSQVFLLFLLSVVFGLAAVFFAKQWM---DDQVQPTVEVETVERRPVVVASQEIEAGT 57 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 ++ L + + + D +L G +V I G+ + + G G Sbjct: 58 IIEDQFLTTRLMEVDWINENNYSDKA------DLIGKVVANTIYAGEVLHKLRFTVPGEG 111 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 L++L+P+ KRA T+ + V G + P + VD++ S + VL +I+V+A Sbjct: 112 STLAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILNTISYGKNSAATQTVLKDIKVLA 171 Query: 179 IDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 +D + E ++ TLE+TP +A+ L+ A+S + L LR+ ++ V Sbjct: 172 VDQTAKTKENSPIIVRAVTLEMTPKEAEKLLTAKSKGSIQLTLRNPHEVEK------KVV 225 Query: 238 DVQEEGKEIQIIKA 251 + IIK Sbjct: 226 RRYVPRPSVTIIKG 239 >gi|110632966|ref|YP_673174.1| putative CpaB2 pilus assembly protein [Mesorhizobium sp. BNC1] gi|110283950|gb|ABG62009.1| putative CpaB2 pilus assembly protein [Chelativorans sp. BNC1] Length = 267 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 6/236 (2%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + R++ ++ + +A +AM P Q + + VL++ DL G V+ Sbjct: 1 MVRILILLFALGSGGIAAWLAMGTAEPTASQPAAAVEQEADPAREVLVAGADLVHGSVLD 60 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + L W + V FI +P+A Q L G LVR + G+PIR ++L G G LS Sbjct: 61 ESHLRWQPWTAGTVPAVFISRAAKPDAPQALKGSLVRGGFVAGEPIREDRLALPGAGFLS 120 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRVIA 178 LP GKRA + ++ SA GG I PND VD++ + + +LSNIRV+A Sbjct: 121 GQLPSGKRAIAVRVTAESAAGGFILPNDRVDLIHTSVLSGQSGGEQVSSRTILSNIRVLA 180 Query: 179 IDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 +D N +SD +V TATLE+ P Q + AA++ +SL LR+ +D + ++ Sbjct: 181 VDQNASGESDGEAVVAKTATLEVEPDQIPIVTAAEASGTISLALRAASDEDEPAAA 236 >gi|260574617|ref|ZP_05842620.1| Flp pilus assembly protein CpaB [Rhodobacter sp. SW2] gi|259023034|gb|EEW26327.1| Flp pilus assembly protein CpaB [Rhodobacter sp. SW2] Length = 284 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 103/249 (41%), Gaps = 8/249 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58 M++ + +VV A A +A +S E + V + L G Sbjct: 1 MRMVFGLVLVVGLALAGFAVYMAQGFISQTQAELAQERAARAKAGPLVEVYVVNKPLNYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117 +T ++ + +P+ + + D + V + K +P+ K+ + Sbjct: 61 DPLTKEDVQKIYWPQNALPETIFTDEALLFPANAVGQRFVLRQMEKFEPLLAVKVTEPGQ 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSNI 174 + GL++ L KG RA + + +S V G + P D+VDV + ++ ++ S I Sbjct: 121 DAGLTARLAKGMRAFAIKVDATSGVSGFLHPGDNVDVYWTGTANDAGVGGEMTRLIESTI 180 Query: 175 RVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 ++IA+D + D +V +T T+E +P + L AQ+ KL+L L D + + Sbjct: 181 KIIAVDQMANDDRSGSAVVAATVTVEASPEEVARLAQAQATGKLALSLVGANDASVAGLV 240 Query: 233 DSDVWDVQE 241 + D + Sbjct: 241 EVDSRSLLG 249 >gi|77462454|ref|YP_351958.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides 2.4.1] gi|221638317|ref|YP_002524579.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides KD131] gi|332560338|ref|ZP_08414660.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides WS8N] gi|77386872|gb|ABA78057.1| Putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides 2.4.1] gi|221159098|gb|ACM00078.1| Flp pilus assembly protein CpaB precursor [Rhodobacter sphaeroides KD131] gi|332278050|gb|EGJ23365.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides WS8N] Length = 274 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 100/254 (39%), Gaps = 7/254 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58 M+L +++ A A +A +S + E+ + V ++ L G Sbjct: 1 MRLVFAFVLLIGIALAGFAVYMAQGYISQTQIALEKERAARKKLGPMVEVFVTNKPLNYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 +T + + +P + + V + K +P+ K+ Sbjct: 61 APLTRADVRTIMWPANALPETIFQKESDLFP-DPAKPRYVLRQMEKFEPVLGVKVTAP-G 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 L G RA + + ++S V G ++P D VDV S S + ++ I ++A Sbjct: 119 IEAGIRLASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGSASSGET-TRLIEKTIPIVA 177 Query: 179 IDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 +D ++D ++ T T+E++P Q L AQ+ +LSL L D +++ D Sbjct: 178 VDQTANADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSLVGRDDTTEATATPVDT 237 Query: 237 WDVQEEGKEIQIIK 250 ++ E ++ ++ Sbjct: 238 RNLIGEPDKVVEVE 251 >gi|126461332|ref|YP_001042446.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides ATCC 17029] gi|126102996|gb|ABN75674.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides ATCC 17029] Length = 274 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 100/254 (39%), Gaps = 7/254 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58 M+L +++ A A +A +S + E+ + V ++ L G Sbjct: 1 MRLVFAFVLLIGIALAGFAVYMAQGYISQTQIALEKERAARKKLGPMVEVFVTNKPLNYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 +T + + +P + + V + K +P+ K+ Sbjct: 61 APLTRADVRTIMWPANALPETIFQKESDLFP-DPAKPRYVLRQMEKFEPVLGVKVTAP-G 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 L G RA + + ++S V G ++P D VDV S S + ++ I ++A Sbjct: 119 IEAGIRLASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGSASSGET-TRLIEKTIPIVA 177 Query: 179 IDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 +D ++D ++ T T+E++P Q L AQ+ +LSL L D +++ D Sbjct: 178 VDQTANADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSLVGRDDTTEATATPVDT 237 Query: 237 WDVQEEGKEIQIIK 250 ++ E ++ ++ Sbjct: 238 RNLIGEPDKVVEVE 251 >gi|170750188|ref|YP_001756448.1| Flp pilus assembly protein CpaB [Methylobacterium radiotolerans JCM 2831] gi|170656710|gb|ACB25765.1| Flp pilus assembly protein CpaB [Methylobacterium radiotolerans JCM 2831] Length = 271 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 76/272 (27%), Positives = 124/272 (45%), Gaps = 14/272 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R + ++ A + M P P +VL++ D+ +G V Sbjct: 1 MNPARFAVLGIALAAGTGAAFL-MSGGDPPPPPPPPAAEAPPQPTTDVLVAAIDMPMGQV 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + L W +P+ V +G++ P A++E G VR L G+PIR +KLV +G Sbjct: 60 LRAADLRWQPWPDGAVANGYMTRKINPKALEETVGASVRSGFLTGEPIRAQKLVRPESGF 119 Query: 121 LSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVL 171 ++++LP G RA + +++ GG I PND VDV+ +L Sbjct: 120 MAAILPPGMRAVAIVTDSRGTNSAGGFILPNDRVDVIRTFRDESNSRANNSDVQLSQTIL 179 Query: 172 SNIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN-- 227 ++IRV+AI + V+ G TATL +TP QA+ L AQ V L+L LRS+AD Sbjct: 180 TDIRVLAIGQLVQEKNGTNVVTGETATLAVTPAQAETLALAQKVGALTLSLRSLADAGRP 239 Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259 P ++ ++ Q + +++ GV + Sbjct: 240 PEATPLAEASAAQMPEPALTVVRFGVARQQTP 271 >gi|292491518|ref|YP_003526957.1| Flp pilus assembly protein CpaB [Nitrosococcus halophilus Nc4] gi|291580113|gb|ADE14570.1| Flp pilus assembly protein CpaB [Nitrosococcus halophilus Nc4] Length = 265 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 116/263 (44%), Gaps = 12/263 (4%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K LM ++ V A +A + + + + V+++ ++ G + Sbjct: 3 KRKSLMLFFIAIVLGTGATWMANQWLQDRMQPGPVEVVAP--ETAPVVVAALEIPFGQKI 60 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 L+ +++P +N+ +G + ++G + I G+PI ++ V++ G Sbjct: 61 ETMHLKVISWPADNMPEGIFHETS------AVEGRVASQKIYPGEPIMKDRAVEQLGGST 114 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRVIA 178 LS+++P+ KRA T+ ++ V G + P + VDV+ R S+ K + +L N++V+A Sbjct: 115 LSAIVPRDKRAVTVRVNDVIGVAGFLLPGNQVDVLSSRKIDRSQNKVQIETILQNLKVLA 174 Query: 179 IDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 +D D + LV TLE P QA+ L A + LVLR+ D+ + Sbjct: 175 VDQTASQDKNQPLVVRAVTLEADPKQAEKLFKATEEGTIQLVLRNPQDVAVIKDPEPVKV 234 Query: 238 DVQEEGKEIQIIKAGVIVNKDGE 260 + K Q I V V + + Sbjct: 235 AKKTYSKAPQPISDSVTVIRGTQ 257 >gi|254477805|ref|ZP_05091191.1| Flp pilus assembly protein CpaB [Ruegeria sp. R11] gi|214032048|gb|EEB72883.1| Flp pilus assembly protein CpaB [Ruegeria sp. R11] Length = 286 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 60/251 (23%), Positives = 107/251 (42%), Gaps = 10/251 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVG 58 M+ + ++V A A ++A ++ + E ++V I+ L G Sbjct: 1 MRAVFGLVLIVGIALAGGAVMMAKNYITAYQNALAEERASRGEVIPLVDVFIANEPLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ-ELDGVLVRVPILKGDPIRLEKLVDR- 116 +TP + V +P+ + +G + Q E +V + K + I K+ Sbjct: 61 ERLTPERVRAVRWPQNAIPEGAFLTAEELFPPQAEEKPRVVLRTMEKDEAILAIKVTKPG 120 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTVVL 171 + GL+S L +G RA + + +SS V G ++P D VDV + ++ ++ Sbjct: 121 EDAGLTSRLERGMRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRVDDQTSERSGDFTRLIQ 180 Query: 172 SNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 +NI +IAID + SD + + T T+ P Q AL AQS +L+L L D +S Sbjct: 181 ANIELIAIDQSAGSDLDGATIARTVTVSARPEQVAALAQAQSTGRLTLSLVGAEDDTVAS 240 Query: 231 SEDSDVWDVQE 241 + D + Sbjct: 241 VIEVDQRSLLG 251 >gi|83943940|ref|ZP_00956397.1| CpaB family protein [Sulfitobacter sp. EE-36] gi|83845187|gb|EAP83067.1| CpaB family protein [Sulfitobacter sp. EE-36] Length = 287 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 105/256 (41%), Gaps = 11/256 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVG 58 M++ + ++ A A +A +S + Q + + V ++ G L G Sbjct: 1 MRMVFGLVLLAGIALAGGAVYLAKGRISEYQRANQQAQEALAQIVPTVGVYVANGPLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 +T + V +PE + +G + D +V + K + I K+ + G Sbjct: 61 QRLTREDVRQVNWPENAIPEGTFIEEAALFPENSDDLRVVLRAMEKDEAIMAVKVTEPGA 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-------SLSERKPTVTVV 170 + GL+S L +G RA + + +SS V G ++P D VDV ++ ++ Sbjct: 121 DTGLTSQLERGSRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRINRGGNDRADTGDVTKLI 180 Query: 171 LSNIRVIAIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 + +++IAID + + +T T+ + P Q AL AQS LSL L D + Sbjct: 181 EAGVKIIAIDQSAGGERSEAAIANTVTVAVQPYQVAALAQAQSTGDLSLSLVGAEDDTVA 240 Query: 230 SSEDSDVWDVQEEGKE 245 + D + +E Sbjct: 241 GEIEVDQRRLLGLTEE 256 >gi|83954513|ref|ZP_00963224.1| CpaB family protein [Sulfitobacter sp. NAS-14.1] gi|83840797|gb|EAP79968.1| CpaB family protein [Sulfitobacter sp. NAS-14.1] Length = 287 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 11/256 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVG 58 M++ + ++ A A +A + + Q + + V ++ G L G Sbjct: 1 MRMVFGLVLLAGIALAGGAVYLAKGRIGEYQRANQQAQEALAQIVPTVGVYVANGPLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 +T + V +PE+ + +G + D +V + K + I K+ + G Sbjct: 61 QRLTREDVRQVKWPEDAIPEGTFIEEAALFPENSDDLRVVLRAMEKDEAIMAAKVTEPGA 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-------SLSERKPTVTVV 170 + GL+S L +G RA + + +SS V G ++P D VDV ++ ++ Sbjct: 121 DTGLTSQLERGSRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRINRGGNDRADTGDVTKLI 180 Query: 171 LSNIRVIAIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 + +++IAID + + +T T+ + P Q AL AQS LSL L D + Sbjct: 181 EAGVKIIAIDQSAGGERSEAAIANTVTVAVQPYQVAALAQAQSTGDLSLSLVGAEDDTVA 240 Query: 230 SSEDSDVWDVQEEGKE 245 + D + +E Sbjct: 241 GEIEVDQRRLLGLTEE 256 >gi|296444396|ref|ZP_06886361.1| Flp pilus assembly protein CpaB [Methylosinus trichosporium OB3b] gi|296258043|gb|EFH05105.1| Flp pilus assembly protein CpaB [Methylosinus trichosporium OB3b] Length = 264 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 73/265 (27%), Positives = 122/265 (46%), Gaps = 14/265 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + V+ V A + + V P VL++ DL G Sbjct: 1 MNKAQIAVLGVAIVAGGGA-FMMLSTEPTPPQPMHLVAPPPPRTTDQVLVAARDLPFGAA 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + W+ +P V G + P ++++G VR P+ G+PIR E+L+ G Sbjct: 60 LAEADTSWIEWPISAVPPGVLRKSEAPEIKKDIEGAFVRTPLANGEPIRRERLIKGQTPG 119 Query: 121 L-SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVLSN 173 L S+++ G+RA +D+S ++ GG I PNDHVDV+ + ++ V+L N Sbjct: 120 LMSTMISAGRRAVAIDVSPNTTAGGFILPNDHVDVIRLYRDPDQGGQIGSDMNSEVILRN 179 Query: 174 IRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +RV+A+ + E + G+TATL+L P QA+ ++ AQ +L+L+LR IAD Sbjct: 180 VRVLAMGPVFQTKNGESSVTGATATLDLEPRQAELVILAQRSGQLALMLRPIADA----L 235 Query: 232 EDSDVWDVQEEGKEIQIIKAGVIVN 256 D + I++ GV Sbjct: 236 ADEKPESAAPGQDPLTIVRFGVTST 260 >gi|323499922|ref|ZP_08104881.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326] gi|323315163|gb|EGA68215.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326] Length = 247 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 11/251 (4%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + ++ ++S VF L A A + + E+ + V+I+ ++ G + Sbjct: 3 RNQVILLFLLSIVFGLGAVFFAKQWMDRQLQPQVEM---ELIEREPVIIASQEIPAGTPI 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 + + +G +EL G +V I +G+ + +L G G Sbjct: 60 EEQHVSSRLLEVDWRNEGQFTK------AEELIGQVVATTIYQGEVVHQNRLAAPGEGST 113 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L+SL+P+ KRA T+ ++ V G + P + VDV+ S VL +I+V+A+D Sbjct: 114 LASLIPENKRAVTIRVNDVIGVAGFLLPGNRVDVLNTIKYSSTYANTVTVLKDIKVLAVD 173 Query: 181 HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 + E + ++ TLE++P A+ L+ A+S ++ L LR+ + + Sbjct: 174 QTARTKENKPIIVRAVTLEVSPKDAEKLLTARSKGEIQLTLRNPHEEEKVVKKYVAPSVT 233 Query: 240 QEEGKEIQIIK 250 +G E I+ Sbjct: 234 IIKGTESSNIR 244 >gi|255262747|ref|ZP_05342089.1| Flp pilus assembly protein CpaB [Thalassiobium sp. R2A62] gi|255105082|gb|EET47756.1| Flp pilus assembly protein CpaB [Thalassiobium sp. R2A62] Length = 282 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 7/248 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58 M+ + +V+ A A +A +S + ++ E +++ +K L G Sbjct: 1 MRAVFGLVLVLGVALAGFAVYMAKGYISDNQLRLAQAEAARAAMVPTVDIFAAKNPLVYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117 ++T + + +PE ++ G + + + +V PI + I K+ Sbjct: 61 QMLTIEDVHHIRYPEASLPPGAFRTIEELFPNGDEKLRVVLRPIEPNEVILPVKVTSPGE 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---ERKPTVTVVLSNI 174 + GL+ L +G RA + + +SS V G ++P D VDV + R+ ++ S++ Sbjct: 121 DAGLTQRLAQGMRAFAIRVDVSSGVSGFVRPGDRVDVYWSGVANVGQRRQDLTRLIQSSV 180 Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 ++IAID + D ++ + T T+E++ ++ AL AQ+ LSL L D + Sbjct: 181 KIIAIDQSADGNQSEARIARTVTVEVSQVEVAALAQAQATGNLSLALVGYGDNTDVGIVE 240 Query: 234 SDVWDVQE 241 D ++ Sbjct: 241 IDTQELLG 248 >gi|39937141|ref|NP_949417.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris CGA009] gi|39650999|emb|CAE29522.1| possible pilus assembly protein cpaB [Rhodopseudomonas palustris CGA009] Length = 270 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 81/261 (31%), Positives = 131/261 (50%), Gaps = 16/261 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+L++ +V+ A A + S + + ++VL++K ++A+G + Sbjct: 1 MRLSKPRIVVLGIALAAGAAAAFLASSSDSERPRQVAEPAPQLQTVDVLVAKSNIALGQL 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 VTP+ + W ++P ++ + F+ PN L G + R P + G+PIR KLV G Sbjct: 61 VTPSDVRWQSWPADSASEHFLRRDKMPNTEAFLAGTIARSPFVAGEPIREVKLVKPNGSG 120 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVLS 172 ++++LP G RA + +IS ++ GG I PND VDV++ + T T +L+ Sbjct: 121 FMAAILPTGMRAVSTEISPETSAGGFILPNDKVDVILTKRDKSSDIPGAKDTVTSTTILT 180 Query: 173 NIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 N+RV+AID + V+VG TATLELT QA+ L A+ LSL LRSIAD Sbjct: 181 NVRVLAIDQLPKEREGQNVVVGKTATLELTGDQAEVLTRARQSGTLSLALRSIADARIV- 239 Query: 231 SEDSDVWDVQEEGKEIQIIKA 251 + K+I + + Sbjct: 240 -----AEASDQGDKQITVYRG 255 >gi|13474659|ref|NP_106228.1| pilus assembly protein cpaB [Mesorhizobium loti MAFF303099] gi|14025414|dbj|BAB52014.1| pilus assembly protein; CpaB [Mesorhizobium loti MAFF303099] Length = 271 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 92/267 (34%), Positives = 142/267 (53%), Gaps = 12/267 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58 M +RL+ + V+ A AG +A +V+ Q + +VL+ GD+A+G Sbjct: 1 MPASRLIILSVAVAAAGGAGYVAKNMVAAPPPQIVVDSGPQAPAVPLQDVLVLSGDVAMG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + N + W ++P + V FI + P+A+++L G + RVP+ G+P+R KL+ G Sbjct: 61 NALQ-NNISWQSWPADGVNANFITKANAPDALEKLKGSIARVPMYAGEPVRRSKLIGEGQ 119 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNI 174 +SS+LP G RA IS ++ GG I PND VDV+M R +L NI Sbjct: 120 SFMSSILPSGMRAVATTISADTSAGGFILPNDFVDVIMTRRADANSGSTGFNTETILKNI 179 Query: 175 RVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230 RV+AID I DE + VG TATLELTP QA+ + AQ +A +L+L LR++AD + Sbjct: 180 RVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTLALRAVADTQEKN 239 Query: 231 SEDSDVWDVQEEGK-EIQIIKAGVIVN 256 ++D K +++IK+G + Sbjct: 240 VGEADYLVSGNGRKGTVRLIKSGEVSE 266 >gi|192292976|ref|YP_001993581.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1] gi|192286725|gb|ACF03106.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1] Length = 270 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 81/261 (31%), Positives = 132/261 (50%), Gaps = 16/261 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+L++ +V+ A A + S + + ++VL++K ++A+G + Sbjct: 1 MRLSKPRIVVLGIALAAGAAAAFLASSSDSERPRQVAEPAPQLQTVDVLVAKSNIALGQL 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 VTP+ + W ++P ++ + F+ PN L G + R P + G+PIR KLV G Sbjct: 61 VTPSDVRWQSWPADSASEHFLRRDKMPNTEAFLAGTIARSPFVAGEPIREVKLVKPNGSG 120 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVLS 172 ++++LP G RA + +IS ++ GG I PND VDV++ + T T +L+ Sbjct: 121 FMAAILPTGMRAVSTEISPETSAGGFILPNDKVDVILTKRDKSSDIPGAKDTVTSTTILT 180 Query: 173 NIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 N+RV+AID + V+VG TATLELT QA+ L A+ LSL LRSIAD + Sbjct: 181 NVRVLAIDQLPKEREGQNVVVGKTATLELTGDQAEVLTRARQSGTLSLALRSIADARVVA 240 Query: 231 SEDSDVWDVQEEGKEIQIIKA 251 + K+I + + Sbjct: 241 EA------SDQGDKQITVYRG 255 >gi|260461950|ref|ZP_05810195.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] gi|259032197|gb|EEW33463.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] Length = 271 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 91/267 (34%), Positives = 140/267 (52%), Gaps = 12/267 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58 M +RL+ + V+ A AG +A +V+P Q + +VL+ GD+A+G Sbjct: 1 MPASRLIILSVAVAAAGGAGYVAKNMVAPPPAQIVVDSGPKAPAVALQDVLVLSGDVAMG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + N + W +P + + FI P+A+++L G + RV + G+P+R KL+ G Sbjct: 61 NQL-ENNIAWQPWPADGINPNFITKATAPDALEKLKGSIARVGMYAGEPVRRSKLIGEGQ 119 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNI 174 +SS+LP G RA IS ++ GG I PND VDV+M R +L NI Sbjct: 120 SFMSSILPSGMRAVATTISADTSAGGFILPNDFVDVIMTRRADANSGSTGFNTETILKNI 179 Query: 175 RVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230 RV+AID I DE + VG TATLELTP QA+ + AQ +A +L+L LR+I D + Sbjct: 180 RVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTLALRAITDTQEKN 239 Query: 231 SEDSDVWDVQEEGK-EIQIIKAGVIVN 256 +++D K +++IK+G + Sbjct: 240 VDEADYLVSGNGRKGTVRLIKSGEVSE 266 >gi|227819322|ref|YP_002823293.1| CpaB pilus assembly protein [Sinorhizobium fredii NGR234] gi|227338321|gb|ACP22540.1| CpaB pilus assembly protein [Sinorhizobium fredii NGR234] Length = 352 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 110/257 (42%), Gaps = 8/257 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++ ++V+ + AL A ++ + + V ++ + G Sbjct: 21 MRSSTMISLIVALLLALGAVFATRSFLADQQARLVSANAPKAEERTLV-VAAKPMRFGDR 79 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 V L+ + +P E +G + + + I G+P+ K+ G Sbjct: 80 VRSENLKAIPWPSEERPEGSFQTLEAVLG-DDTEPRYAMEAIDPGEPVLTSKITGTGERA 138 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNIR 175 LS+ L +G +A ++ ++ V G ++P+D VDV++ R + + V V+L ++ Sbjct: 139 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRQQNNSEQTYVDVLLQGVK 198 Query: 176 VIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+A+D D + + T T E+T +A+ L S+ LSL LR+IA N + Sbjct: 199 VLAVDQTADERKDEPSIVKTVTFEVTTDEAQRLTLGASIGTLSLTLRNIASSNVEQTRPI 258 Query: 235 DVWDVQEEGKEIQIIKA 251 V D+ + K+ Sbjct: 259 TVADLGGGLISADLAKS 275 >gi|89068016|ref|ZP_01155433.1| CpaB family protein [Oceanicola granulosus HTCC2516] gi|89046255|gb|EAR52312.1| CpaB family protein [Oceanicola granulosus HTCC2516] Length = 281 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 111/256 (43%), Gaps = 5/256 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58 M+ + ++V A A +A + Q E + + V + G Sbjct: 1 MRAVFGLVLIVGVGLAGFAVYMAQGYLQDTQAQLARERAVAAQATPTVEVYAVTRQIGYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117 +TP+ + V + E + DG + + +V P+ +P+ K+ + Sbjct: 61 EQLTPDDVTLVKYAEPFLPDGVFRAEEELFPEGDTQLRVVLRPMEVNEPVLAVKVTEPGE 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRV 176 + G++S L +G RA + + ++S V G ++P D VD+ S + ++ SN+ + Sbjct: 121 DAGITSRLGRGMRAFAIRVDVASGVSGFLRPGDKVDIYWTGRNSRGGEEVTKLIESNVNL 180 Query: 177 IAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 IAID + D + T T+E+TP Q AL AQS +LSL L D + + + D Sbjct: 181 IAIDQSADGSALNTTIARTVTVEITPQQVAALAQAQSTGRLSLSLVGTNDDTVAEAIEVD 240 Query: 236 VWDVQEEGKEIQIIKA 251 + ++ Q+++A Sbjct: 241 QRRLLGIPEQQQVVEA 256 >gi|190889880|ref|YP_001976422.1| pilus assembly protein [Rhizobium etli CIAT 652] gi|218509313|ref|ZP_03507191.1| pilus assembly protein [Rhizobium etli Brasil 5] gi|190695159|gb|ACE89244.1| pilus assembly protein [Rhizobium etli CIAT 652] gi|327194695|gb|EGE61541.1| pilus assembly protein [Rhizobium etli CNPAF512] Length = 271 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 115/267 (43%), Positives = 163/267 (61%), Gaps = 6/267 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ V A +AG++AMR+ V T+ +NVL+S G+LAVG Sbjct: 1 MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIEKEPTVNVLVSSGNLAVGQR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W+A+P+ V G I ++ +P+A+++L G +VR+PI +G+PIR EK+ D + Sbjct: 61 LEEGSVHWMAWPQGGVVPGLITEIEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +E K VLSN+RV+AI Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180 Query: 180 DHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235 D I D + +VG+TATLELTP Q K L AQ +A +LSL LRS+AD + +D Sbjct: 181 DQQIQEKDDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240 Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDGEG 261 + G IQ+IK+G IV G Sbjct: 241 YLLSGDNGSAIIQVIKSGSIVTDAGAA 267 >gi|260776716|ref|ZP_05885611.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] gi|260607939|gb|EEX34204.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] Length = 247 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 110/252 (43%), Gaps = 19/252 (7%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + ++ ++S F L A A + + EV + + ++ G V+ Sbjct: 3 RNQVILLFLLSIAFGLGAVFFAKQWMDRQLQPQTEVEVVEREPVVV---AAQEIPAGSVI 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 L ++ D Q + +EL G +V I G+ I +L G G Sbjct: 60 GEQHLTSKLLEKDW------RDEFQFTSSEELIGQVVATSIFPGEIINQNRLTVPGEGST 113 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L++L+P+ KRA T+ ++ V G + P + VD++ SE + + VL +I+V+A+D Sbjct: 114 LAALIPENKRAVTIRVNDVIGVAGFLLPGNKVDILSTVKYSETSASTSTVLKDIKVLAVD 173 Query: 181 HNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 + D + ++ TLE+TP QA+ L+ A+S ++ L LR+ + + Sbjct: 174 QTARTKDNKPIIVRAVTLEVTPRQAEKLLTARSKGEIQLTLRNPHEEEKA--------VK 225 Query: 240 QEEGKEIQIIKA 251 + + IIK Sbjct: 226 RYVAPSVTIIKG 237 >gi|167624206|ref|YP_001674500.1| SAF domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167354228|gb|ABZ76841.1| SAF domain protein [Shewanella halifaxensis HAW-EB4] Length = 270 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 16/250 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ +++S VF + A +A + TE NV+ ++ +G + Sbjct: 1 MNNKTVLFVILSLVFGVTAVYLAQSWLKS------NTQTETVGTTSNVITMVTEVPLGTI 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + L PE V G I D+ E +G +V+ + +G+ +R E+L +G G Sbjct: 55 IERKHLALTPVPENLVPKGAITDI------TEAEGQVVKHRLYQGEVLRKERLTPKGEGS 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+SL+ RA T+ ++ V G + P + VD++ + S +VLSN++++AI Sbjct: 109 TLASLITPTMRAVTIRVNDVVGVAGFLLPGNRVDIINIFKSS--GLKTDIVLSNVKILAI 166 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D +DE + ++ TLEL+ QA+ L+ A+S L L LR+ D + D D Sbjct: 167 DQKASNDENKPVLVRAVTLELSLEQAEVLMIAKSRGSLQLALRNPNDTAVIELAEIDEPD 226 Query: 239 VQEEGKEIQI 248 E I Sbjct: 227 EDEVEISENI 236 >gi|323491531|ref|ZP_08096710.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] gi|323314107|gb|EGA67192.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] Length = 247 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 108/252 (42%), Gaps = 19/252 (7%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + ++ ++S F L A A + + EV + I+ ++ G V+ Sbjct: 3 RNQVILLFLLSIAFGLGAVFFAKQWMDNQLQPQTEVEVVEREPVV---IAAQEIPAGTVI 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 + + + Q A ++L G +V + G+ + + +L ++G G Sbjct: 60 EEQHIT------NKLLEKAWRSESQFTASEDLIGQVVASNVYPGEILHISRLANQGEGST 113 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L+SL+P+ KRA T+ ++ V G + P + VDV+ + VL I+V+A+D Sbjct: 114 LASLIPENKRAVTIRVNDVIGVAGFLLPGNKVDVLNTIKYGKNSANTVTVLKEIKVLAVD 173 Query: 181 HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 + E + ++ TLE++P QA+ L++AQS + L LR+ + Sbjct: 174 QTARTKENKPIIVRAVTLEVSPRQAEKLLSAQSRGDIQLALRNPHEEEKV--------VK 225 Query: 240 QEEGKEIQIIKA 251 + + IIK Sbjct: 226 RYVAPSVTIIKG 237 >gi|319785609|ref|YP_004145085.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171497|gb|ADV15035.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 270 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 90/266 (33%), Positives = 140/266 (52%), Gaps = 11/266 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP-AKFINVLISKGDLAVGM 59 M +RL+ + V+ A AG +A +V+P + + P +VL+ GD+ +G Sbjct: 1 MPASRLIILSVAVAAAGGAGYVAKNMVAPPPQVVVDSAPQAPAVALQDVLVLSGDVPMGS 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + N + W ++P + V FI +P A+ +L G + RV + G+P+R KL+ G Sbjct: 61 PIQ-NNIAWQSWPADGVNANFITRTAEPEALDKLKGSIARVAMYAGEPLRRSKLIGEGQS 119 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNIR 175 +SS+LP G RA IS ++ GG I PND VDV+M R +L NIR Sbjct: 120 FMSSILPSGMRAVATAISADTSAGGFILPNDFVDVIMTRRADAASGAAGFNTETILKNIR 179 Query: 176 VIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSS 231 V+AID I DE + VG TATLELTP QA+ + AQ +A +L+L LR++AD + Sbjct: 180 VLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTLALRAVADTQEKNV 239 Query: 232 EDSDVWDVQEEGK-EIQIIKAGVIVN 256 ++D + +++IK+G + Sbjct: 240 GEADYLVSGNGRRGTVRLIKSGEVSE 265 >gi|258405292|ref|YP_003198034.1| Flp pilus assembly protein CpaB [Desulfohalobium retbaense DSM 5692] gi|257797519|gb|ACV68456.1| Flp pilus assembly protein CpaB [Desulfohalobium retbaense DSM 5692] Length = 295 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 104/245 (42%), Gaps = 13/245 (5%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQT--EEVITENPAKFINVLISKGDLAVGM 59 +L L+ I ++ V A+ + + + E E V+++ D++ G Sbjct: 3 RLRALIPIALALVIAIAGSVFIYNWMQEQTTRQDTVEKAREKAPSTQEVVVAALDISAGS 62 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-- 117 +T +L+ + ++N+ G D +L G + P K +PI +L Sbjct: 63 QLTEEMLQTGQYLKKNLPPGSFTDPD------QLLGRVALAPFKKNEPIVDHRLAPTDIK 116 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRV 176 +GG+S+L+ KG RA ++ + + G + P VDV++ + +L N+++ Sbjct: 117 SGGVSALISKGNRAVSLGGNKVLGISGFVLPGSRVDVMVTWNDPDSGEQITKRILDNVKI 176 Query: 177 IAIDHNIDSDER--VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 +A + E TLE+TP +A+ L ++ L + LR+ D P ++ + Sbjct: 177 LATSTKMQETESGGTAPVDVYTLEVTPEEAEILTHIRNQGSLQMALRNPTDNEPVMTDGA 236 Query: 235 DVWDV 239 D Sbjct: 237 TAKDS 241 >gi|269966891|ref|ZP_06180964.1| putative pilus assembly protein [Vibrio alginolyticus 40B] gi|269828558|gb|EEZ82819.1| putative pilus assembly protein [Vibrio alginolyticus 40B] Length = 251 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 112/253 (44%), Gaps = 17/253 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + +M +++S VF L A +IA + + + T E+ + VL++ +L G ++ Sbjct: 3 RTQVIMLLLLSIVFGLAAVLIAKQWMDGRNQPTVEL---EEVERHPVLVAAMELEPGTIL 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120 + L + + D ++ G +V I G+ + +L Sbjct: 60 SEKHLSTKLMEVDWI------DDETLKVKEQALGRIVANTIYAGELVNPHRLALPGEGAT 113 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAI 179 L++L+P+ KRA T+ ++ V G + P + VDV+ + T VL NI V+A+ Sbjct: 114 LAALIPENKRAITIRVNDVIGVAGFLLPGNKVDVLNTVSYGQGKNATTKTVLKNINVLAV 173 Query: 180 DHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D +D + ++ TLE+TP +A+ L++A S + L LR+ +++ V Sbjct: 174 DQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGDIQLALRNPHEVDKPV-----VAR 228 Query: 239 VQEEGKEIQIIKA 251 + IIK Sbjct: 229 KYTPRPSVTIIKG 241 >gi|294140773|ref|YP_003556751.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12] gi|293327242|dbj|BAJ01973.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12] Length = 270 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 120/266 (45%), Gaps = 16/266 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ +++S F +VA +A + + T P V+ + +G + Sbjct: 1 MNNKTMLFVLLSLAFGVVAVFLAQSWLESNS------ETGGPENTSTVITMATLVPLGAI 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + L+ P+ + + I +E +G++V+ + G+ +R E+++ +G G Sbjct: 55 LERKHLKLTPMPKSVIPETAIKT------FEEAEGMVVKHNLYTGEILRSERIIKKGEGS 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+SL+ RA T+ ++ V G + P + VDV+ + +VL+N++++AI Sbjct: 109 TLASLISPNMRAVTIRVNDVVGVAGFLLPGNRVDVLNLFKKD-GALHTDIVLANVKILAI 167 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D +DE + + TLEL+ QA+ L+ A+ KL L LR+ D + + Sbjct: 168 DQRSSNDENKPKLVRAVTLELSLEQAEILLIAKGRGKLQLALRNPNDSAEVELALINETE 227 Query: 239 VQEEGKEIQIIKAG-VIVNKDGEGIS 263 +E+ ++ A IV E S Sbjct: 228 KREKRPVSNMVMAPKKIVRVSSESKS 253 >gi|326388865|ref|ZP_08210447.1| Flp pilus assembly CpaB [Novosphingobium nitrogenifigens DSM 19370] gi|326206465|gb|EGD57300.1| Flp pilus assembly CpaB [Novosphingobium nitrogenifigens DSM 19370] Length = 347 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 78/267 (29%), Positives = 130/267 (48%), Gaps = 19/267 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +L+ +V + +FA+ + A L++ + VL+++ L VG + Sbjct: 1 MDRKKLILLVGALIFAIATSLAARALLTGGSTPQA-IAAAKVLDGPKVLVAQRALPVGTI 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 +T + + + A+P++ V D + MQ+L G +VR PI G PI LV G+ G Sbjct: 60 ITADAVSYQAWPKDLVQDAYFLQDKT--DMQKLLGTVVRNPITAGQPITTGSLVAPGDRG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNI 174 L++ L G RA T+ +S + V G + P DHVD+++ +S+ + +L N+ Sbjct: 118 FLAAALGPGMRAVTIPVSTRTGVAGFVFPGDHVDLLLTQSVKGDGESQALKATETILKNL 177 Query: 175 RVIAIDHNIDSD-----ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD---- 225 RV+A D + D + RV S T+E TP A+ L A+S+ +SL LRSIAD Sbjct: 178 RVLATDQSTDQETVDGHTRVKGFSLVTVEATPKIAEELAVAESIGTISLSLRSIADNSSE 237 Query: 226 -LNPSSSEDSDVWDVQEEGKEIQIIKA 251 +S + +E ++IKA Sbjct: 238 LEQAVASGQVKFPAGASKAEEDRLIKA 264 >gi|126725968|ref|ZP_01741810.1| CpaB family protein [Rhodobacterales bacterium HTCC2150] gi|126705172|gb|EBA04263.1| CpaB family protein [Rhodobacterales bacterium HTCC2150] Length = 284 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 105/257 (40%), Gaps = 9/257 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58 M+L +V A A +A + + + +N + V ++ L G Sbjct: 1 MRLVFGAVLVAGVGLAGFAVNMAQDRIGQYQSALAASQANAQNKVELKTVFVASKTLDYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117 ++T + P +++ +G + + + + + K+ Sbjct: 61 DMLTEEDVREAMVPVDSIPEGAFMAKADLFDENPNKPRQILRLMTENEILLAYKVTKPGE 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTVVLS 172 G+++LL G RA ++ + ++ V G++ +DHVDV ++ ++ + Sbjct: 121 EAGVATLLTPGMRAFSIRVDDTTGVAGLLNADDHVDVYWTGGKADGLGNRDGGVTKLIQA 180 Query: 173 NIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 N++++AID + D T T+E++P Q +L AQ+ KLSL L I+D + Sbjct: 181 NVKLVAIDDSADKQRSSSRSARTVTVEVSPQQVASLAQAQNSGKLSLSLVGISDDIVALV 240 Query: 232 EDSDVWDVQEEGKEIQI 248 E+ D + + + + Sbjct: 241 EEVDQNRLLGVQETVVV 257 >gi|300704929|ref|YP_003746532.1| pilus assembly (cpab), transmembrane protein [Ralstonia solanacearum CFBP2957] gi|299072593|emb|CBJ43943.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia solanacearum CFBP2957] Length = 284 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 66/256 (25%), Positives = 124/256 (48%), Gaps = 30/256 (11%) Query: 1 MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK R++ ++++ + L A + A R +S V+++ D+ +G Sbjct: 1 MKNLRILSMLLIATIAGLAAVVFASRWLSQQSNSGI----------TKVVVAAADIDLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 ++P+ ++ V +P ++ G I D H + G +VR +++G+P+ KL + Sbjct: 51 RLSPDFIKTVDWPSASLPPGAISDTHALD------GRVVRTSLIRGEPVLESKLTPQGTA 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-----------MVRSLSERKPTV 167 GGLS+++ GKRA T+ ++ V G P +VD++ + Sbjct: 105 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTIQDSKDAKATGGDRADQSIS 164 Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +VL I V+A+ ++ D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 165 KIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVDP 224 Query: 227 NPSSSEDSDVWDVQEE 242 +P+ + + + +E Sbjct: 225 HPADTAGATKRTLLKE 240 >gi|300021853|ref|YP_003754464.1| Flp pilus assembly protein CpaB [Hyphomicrobium denitrificans ATCC 51888] gi|299523674|gb|ADJ22143.1| Flp pilus assembly protein CpaB [Hyphomicrobium denitrificans ATCC 51888] Length = 267 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 80/269 (29%), Positives = 135/269 (50%), Gaps = 14/269 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +L+G V+ A +A IA ++P V E VL++ D++VG + Sbjct: 1 MKRAQLVGFSVAFAAAALAYYIASAFMTPPKT----VTVEKQVDSTEVLVAATDISVGQI 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQ-PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 V W +P+ V ++ + P E G + R IL G+P+ +KL+ G G Sbjct: 57 VNEGNFHWATWPKSAVTADYVTKANSGPGKAHEFTGAVARSAILSGEPVTTQKLIKAGQG 116 Query: 120 G-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNI 174 G L+++LP+G RA + I +A G +I PNDHVDV+++R + + + N+ Sbjct: 117 GVLAAILPQGMRAISTKIKAETAAGSLILPNDHVDVILIRHVRSRSGQEETVADTLFRNV 176 Query: 175 RVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 RV+AI I++ + STATLEL P QA+ + A S+ +++L LRS+ADL+ Sbjct: 177 RVMAIGQQIETKDGKKSADISASTATLELMPKQAEMMALANSMGEITLSLRSVADLSSDP 236 Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259 ++ + + ++I++ G G Sbjct: 237 ERAGNLDLNKPQNNSVRIVRYGAKSRVYG 265 >gi|269962016|ref|ZP_06176371.1| hypothetical protein VME_27550 [Vibrio harveyi 1DA3] gi|269833339|gb|EEZ87443.1| hypothetical protein VME_27550 [Vibrio harveyi 1DA3] Length = 251 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 114/253 (45%), Gaps = 17/253 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K +M +++S VF L A +IA + + + T E+ + VL++ +L GMV+ Sbjct: 3 KTQVVMLLLLSIVFGLAAVLIAKQWIDGQNQPTVEL---EEIERHPVLVAAMELEPGMVL 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120 L + + + ++ G +V I G+ + +L Sbjct: 60 EEKHLTTKLMEVDWI------EEDTLKVSEQALGRIVANTIYSGEMVNPNRLALPGEGAT 113 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAI 179 L++L+P+ KRA T+ ++ V G + P + VD++ S + + VL NI+V+A+ Sbjct: 114 LAALIPENKRAITIRVNDVIGVAGFLLPGNKVDILNTISSGKGKSASTKTVLKNIKVLAV 173 Query: 180 DHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D +D + ++ TLE+TP +A+ L++ S K+ L LR+ +++ V Sbjct: 174 DQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSENSKGKIQLALRNPHEVDKPP-----VAR 228 Query: 239 VQEEGKEIQIIKA 251 + IIK Sbjct: 229 KYTPRPSVTIIKG 241 >gi|254229331|ref|ZP_04922748.1| Flp pilus assembly protein CpaB [Vibrio sp. Ex25] gi|262393416|ref|YP_003285270.1| flp pilus assembly protein RcpC/CpaB [Vibrio sp. Ex25] gi|151938139|gb|EDN56980.1| Flp pilus assembly protein CpaB [Vibrio sp. Ex25] gi|262337010|gb|ACY50805.1| flp pilus assembly protein RcpC/CpaB [Vibrio sp. Ex25] Length = 251 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 112/253 (44%), Gaps = 17/253 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + +M +++S VF L A +IA + + + T E+ + VL++ +L G ++ Sbjct: 3 RTQVIMLLLLSIVFGLAAVLIAKQWMDGRNQPTVEL---EEVERHPVLVAAMELEPGTIL 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120 + L + + D ++ G +V I G+ + +L Sbjct: 60 SEKHLSTKLMEVDWI------DDETLKVQEQALGRIVANTIYAGELVNSNRLALPGEGAT 113 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAI 179 L++L+P+ KRA T+ ++ V G + P + VDV+ + T VL NI V+A+ Sbjct: 114 LAALIPENKRAITIRVNDVIGVAGFLLPGNKVDVLNTVSYGQGKNATTKTVLKNINVLAV 173 Query: 180 DHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D +D + ++ TLE+TP +A+ L++A S + L LR+ +++ V Sbjct: 174 DQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGDIQLALRNPHEVDKPV-----VAR 228 Query: 239 VQEEGKEIQIIKA 251 + IIK Sbjct: 229 KYTPRPSVTIIKG 241 >gi|299067806|emb|CBJ39017.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia solanacearum CMR15] Length = 295 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 118/259 (45%), Gaps = 33/259 (12%) Query: 1 MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK R++ ++++ + L A + A R + I + + V ++ D+ +G Sbjct: 8 MKNLRILSMLLIATIAGLAAMLFASRWL----------IQQGNSGTTKVAVAAVDVNLGQ 57 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 ++P + V +P ++ G I D H + G + R + G+P+ KL Sbjct: 58 RLSPEFIRLVDWPAASLPPGAISDEHAID------GRVTRTSLSPGEPVLESKLTPVGTK 111 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--------------ERK 164 GGLS+++ GKRA T+ ++ V G P +VD+++ E Sbjct: 112 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQEAPDGKPAKGAQADREEH 171 Query: 165 PTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 +VL I V+A+ ++ DE + V + TLE+TP +A+ L A+SV LSLVLR+ Sbjct: 172 SISKIVLEKILVLAVAQEVNRDETKPKVVNAVTLEVTPDEAEKLDLARSVGTLSLVLRNQ 231 Query: 224 ADLNPSSSEDSDVWDVQEE 242 D P + + + +E Sbjct: 232 VDPRPVDTAGATKSTLLKE 250 >gi|83749639|ref|ZP_00946622.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN; cpaB1 [Ralstonia solanacearum UW551] gi|207728107|ref|YP_002256501.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2] gi|207744157|ref|YP_002260549.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609] gi|83723700|gb|EAP70895.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN; cpaB1 [Ralstonia solanacearum UW551] gi|206591352|emb|CAQ56964.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2] gi|206595561|emb|CAQ62488.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609] Length = 284 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 66/256 (25%), Positives = 124/256 (48%), Gaps = 30/256 (11%) Query: 1 MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK R++ ++++ + L A + A R +S V+++ D+ +G Sbjct: 1 MKNLRILSMLLIATIAGLAAVVFASRWLSQQSSSGI----------TKVVVAAADIDLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 ++P+ ++ V +P ++ G I D H + G +VR +++G+P+ KL + Sbjct: 51 RLSPDFIKTVDWPSASLPPGAISDTHALD------GRVVRTSLIRGEPVLESKLTPQGTA 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-----------MVRSLSERKPTV 167 GGLS+++ GKRA T+ ++ V G P +VD++ + Sbjct: 105 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTIQDSKDAKATGGDRADQSIS 164 Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +VL I V+A+ ++ D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 165 KIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVDP 224 Query: 227 NPSSSEDSDVWDVQEE 242 +P+ + + + +E Sbjct: 225 HPADTAGATKRTLLKE 240 >gi|153834044|ref|ZP_01986711.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01] gi|148869599|gb|EDL68589.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01] Length = 251 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 115/255 (45%), Gaps = 18/255 (7%) Query: 1 MKLTRL-MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M T++ M +++S VF L A +IA + + + T E+ + VL++ +L G Sbjct: 1 MSKTQIVMLLLLSIVFGLAAVLIAKQWIDGQNQPTVEL---EEVERHPVLVAAMELEPGT 57 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 ++ L + + + ++ G +V I G+ + +L Sbjct: 58 ILEEKHLTTKLMEVDWI------EESTLKVSEQALGRIVANTIYSGEMVNPNRLALPGEG 111 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVI 177 L++L+P+ KRA T+ ++ V G + P + VD++ S + + VL NI+V+ Sbjct: 112 ATLAALIPENKRAITIRVNDVIGVAGFLLPGNKVDILNTISSGKGKSASTKTVLKNIKVL 171 Query: 178 AIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 A+D +D + ++ TLE+TP +A+ L++ S K+ L LR+ +++ V Sbjct: 172 AVDQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSENSKGKIQLALRNPHEVDKPV-----V 226 Query: 237 WDVQEEGKEIQIIKA 251 + IIK Sbjct: 227 ARRYTPRPSVTIIKG 241 >gi|241207156|ref|YP_002978252.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861046|gb|ACS58713.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 271 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 111/267 (41%), Positives = 160/267 (59%), Gaps = 6/267 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ V A +AG++AM++ V T+ +N+L+S G+L+VG Sbjct: 1 MKPARLIILAVAVVAAGLAGLLAMQMAGSGGVVTQVRSVVEKEPTVNILVSSGNLSVGAR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W+A+P+ V G I + +P+A+++L G +VR+PI +G+PIR EK+ D + Sbjct: 61 LDDQAVHWMAWPQGGVVPGLITETDKPDAIKDLQGAVVRLPIFEGEPIRPEKIADSSSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR K VLSN+RV+AI Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGAEADKLITETVLSNVRVLAI 180 Query: 180 DHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235 D I D + +VG+TATLELTP Q K L AQ +A +LSL LRS+AD + +D Sbjct: 181 DQQIQEKDDGSKSVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240 Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDGEG 261 + G IQ+IK+G IV G Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDAGAA 267 >gi|28899194|ref|NP_798799.1| putative pilus assembly protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836767|ref|ZP_01989434.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ3810] gi|260361568|ref|ZP_05774595.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus K5030] gi|260876725|ref|ZP_05889080.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AN-5034] gi|260898196|ref|ZP_05906692.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus Peru-466] gi|260900396|ref|ZP_05908791.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ4037] gi|28807418|dbj|BAC60683.1| putative pilus assembly protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749913|gb|EDM60658.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ3810] gi|308089099|gb|EFO38794.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus Peru-466] gi|308091466|gb|EFO41161.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AN-5034] gi|308109142|gb|EFO46682.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ4037] gi|308114026|gb|EFO51566.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus K5030] gi|328474269|gb|EGF45074.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 10329] Length = 251 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 113/255 (44%), Gaps = 17/255 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + +M +++S VF L A +IA + + + T E+ + V+++ +L G ++ Sbjct: 3 RTQVIMLLLLSIVFGLAAVLIAKQWMDGRNQPTVEL---EEVERHPVVVATMELEPGTIL 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120 L + + D ++ G +V I G+ + +L Sbjct: 60 DEKHLTTKLMEVDWI------DDETLKVPEQALGRIVANTIYAGELVNPNRLAQPGEGAT 113 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAI 179 L++L+P+ KRA T+ ++ V G + P + VDV+ ++ T VL NI V+A+ Sbjct: 114 LAALIPENKRAVTIRVNDVIGVAGFLLPGNKVDVLSTVSYGKGKQATTLTVLKNINVLAV 173 Query: 180 DHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D +D + ++ TLE+TP +A+ L++A S ++ L LR+ +++ V Sbjct: 174 DQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGEIQLALRNPHEVDKPV-----VAK 228 Query: 239 VQEEGKEIQIIKAGV 253 + IIK Sbjct: 229 KYTPRPSVTIIKGSQ 243 >gi|254506783|ref|ZP_05118923.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16] gi|219550364|gb|EED27349.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16] Length = 233 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 11/238 (4%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 F L A A + + E+ + V+I+ ++ G + + E Sbjct: 2 FGLGAVFFAKQWMDRQLQPQTEL---EVVEREPVIIASQEIPAGTPIEEQHITTKLLEVE 58 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAAT 133 +G D + + G +V I G+ + +L G G L+SL+P+ KRA T Sbjct: 59 WRNEGQFTDQN------AILGQVVATTIFPGEVLHQNRLTVPGEGSTLASLIPENKRAVT 112 Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVG 192 + ++ V G + P + VDV+ S VL +I+V+A+D + E + ++ Sbjct: 113 IRVNDVIGVAGFLLPGNRVDVLNTIKYSATSANTVTVLKDIKVLAVDQTARTKENKPIIV 172 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 TLE++P A+ L+ A+S ++ L LR+ + + +G E I+ Sbjct: 173 RAVTLEVSPKDAEKLLTARSKGEIQLTLRNPHEEEKVVKKYVAPSVTILKGTESSNIR 230 >gi|303248301|ref|ZP_07334563.1| Flp pilus assembly protein CpaB [Desulfovibrio fructosovorans JJ] gi|302490326|gb|EFL50238.1| Flp pilus assembly protein CpaB [Desulfovibrio fructosovorans JJ] Length = 304 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 114/251 (45%), Gaps = 16/251 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + ++++ + A+ AG++ +R + + + AK ++VL++ + G Sbjct: 1 MKSKAIPHMILAVILAVAAGVLTIRWLGSVRGPGQAQRPKVEAKKVDVLVAARAIPKGAR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR--GN 118 + +L + E V G + A+ E +G + I K DPI +KL+ + Sbjct: 61 LDAAMLRLKPYEAEAVPGGALR------AVAEAEGRVAARDISKDDPITPDKLMAKGVTR 114 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRV 176 GGL + + GKRA T+ + GG++ P VDVV+ + + V+L NI V Sbjct: 115 GGLDAAVAPGKRAVTVKGTKVMGSGGLVTPGSRVDVVVTYSRPGKQEEKVSKVILENIPV 174 Query: 177 IAIDHNIDS----DERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 +A ++ D R + ST TL +TP +A+ L A + + + LR D + Sbjct: 175 LATGTELEPRIGKDGREELASTDSFTLMVTPEEAERLALAADLGSMHMALRKPGDDDVVK 234 Query: 231 SEDSDVWDVQE 241 + +DV E Sbjct: 235 TPGADVAGSLE 245 >gi|87199102|ref|YP_496359.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444] gi|87134783|gb|ABD25525.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444] Length = 342 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 128/250 (51%), Gaps = 14/250 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +LM +V + + A+ A L + + E + P VL+++ L VG + Sbjct: 1 MDKRKLMLLVGALIVAIGTAFAARSLFAGNSTPQAEAAAKVPTGP-KVLVAQRALPVGTI 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 +T + + + A+P++ V D + + MQ+L G +VR PI G+P+ LV G+ G Sbjct: 60 ITADSINFQAWPKDMVQDAYFVEGEA--DMQKLLGTVVRNPITAGEPVTKGNLVAPGDRG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVLSNI 174 L++ L G RA T+ +S + V G + P DH+D+V+ +++ +L N+ Sbjct: 118 FLAAALGAGMRAVTIPVSARTGVAGFVFPGDHIDLVLTQTVKGTGEGMALKASETILKNL 177 Query: 175 RVIAIDHNIDSDE-----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 RV+A D + + ++ RV ST TLE+TP A+ + AQ++ +SL LRS+AD + Sbjct: 178 RVLATDQSTEQEQVEGKTRVRTFSTVTLEVTPKIAEKIAVAQTIGTISLSLRSLADNSAE 237 Query: 230 SSEDSDVWDV 239 + DV Sbjct: 238 LEQAIAAGDV 247 >gi|323137424|ref|ZP_08072502.1| Flp pilus assembly protein CpaB [Methylocystis sp. ATCC 49242] gi|322397411|gb|EFX99934.1| Flp pilus assembly protein CpaB [Methylocystis sp. ATCC 49242] Length = 267 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 11/242 (4%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 M S Q V+ P VL++ DL G + + WV +P+ +V G + Sbjct: 20 FMMMNSSSPPPQAPVVVAPPPMNTEQVLVATRDLTYGTEIVDQDMAWVEWPKTSVPVGSL 79 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL-SSLLPKGKRAATMDISISS 140 PNA +E+ VR+PI G+PIR ++L+ GL S++L GKRA +D+++++ Sbjct: 80 TKTESPNAQEEVKSSYVRIPIAGGEPIRKDRLIKGVTAGLMSTMLSPGKRAIAIDVTLNN 139 Query: 141 AVGGMIKPNDHVDVVMVRSLSE-------RKPTVTVVLSNIRVIAIDHNID--SDERVLV 191 GG I PND VDV+ +E VVLSN+RV+A+ I+ E V+ Sbjct: 140 TAGGFILPNDRVDVLRTYRDTEATKDLGHEVYNSEVVLSNVRVLAMGQTIEKKGAEPVVT 199 Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 GSTATLEL P QA+ +V AQ +L L LR I D + ++ + +++ Sbjct: 200 GSTATLELDPRQAELVVLAQRTGQLVLSLRPITD-AINKDAAAEAPADPGSDDSLTVVRH 258 Query: 252 GV 253 GV Sbjct: 259 GV 260 >gi|90406751|ref|ZP_01214944.1| Flp pilus assembly protein CpaB [Psychromonas sp. CNPT3] gi|90312204|gb|EAS40296.1| Flp pilus assembly protein CpaB [Psychromonas sp. CNPT3] Length = 286 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 108/267 (40%), Gaps = 25/267 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RLM V + G+ T + + K + +L+S ++ G + Sbjct: 1 MTAKRLMYFSVFISLIGLLGLFM-----SVSSPTAPALIKEENKTLTILVSSQEIKSGRL 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGNG 119 + +I W PE ++ + + +V + G + L Sbjct: 56 YSASIFAWKKVPESDLAEQIDYIQKIDFNNKAYKKSIVTGDLPAGHIMSQSDFLTLEDGA 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVV 170 LS LL G RA ++ + +A G+I+P DHVDV++ R V + Sbjct: 116 FLSVLLRPGYRAVSVGVDHITANSGLIRPGDHVDVLLLASKEKELRSTGNETRSLYVKTI 175 Query: 171 LSNIRVIAIDHNIDSDERVLVG----------STATLELTPMQAKALVAAQSVAKLSLVL 220 + N+RV+A++ + D S TLE+ P QA ++ A + LS++L Sbjct: 176 VQNVRVLALNDALQIDRYQEEKKRNKGMLPEKSAVTLEVLPAQANTVILANQLGTLSMLL 235 Query: 221 RSIADLNPSSSEDSDVWDVQEEGKEIQ 247 R+ +D + ++ D+ D+ E K++Q Sbjct: 236 RNSSDNSILANTQVDIGDIFPEIKQVQ 262 >gi|163751743|ref|ZP_02158961.1| hypothetical Flp pilus assembly protein [Shewanella benthica KT99] gi|161328395|gb|EDP99554.1| hypothetical Flp pilus assembly protein [Shewanella benthica KT99] Length = 270 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 112/249 (44%), Gaps = 15/249 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ +++S VF +VA +A + + + V+ + +G + Sbjct: 1 MNNKTMLFVLLSLVFGVVAVFLAQSWLESNS------EADGLEATSTVITMATLVPLGAI 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + L+ P + + I +E +G++V+ + G+ +R E+++ +G G Sbjct: 55 LERKHLKLTPMPNSVIPEAAIKT------FEEAEGMVVKHNLYSGEILRSERIIKKGEGS 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+SL+ RA T+ ++ V G + P + VDV+ + +VL+NI+++AI Sbjct: 109 TLASLISPNMRAVTIRVNDVIGVAGFLLPGNRVDVLNLFKKD-GSLHTDIVLANIKILAI 167 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D +DE + + TLE++ QA+ L+ A+ KL L LR+ D + Sbjct: 168 DQRSSNDENKPTLVRAVTLEMSLEQAETLLIAKGRGKLQLALRNPNDSAEVELALINEKQ 227 Query: 239 VQEEGKEIQ 247 +EE + Sbjct: 228 QREEISVVN 236 >gi|283852072|ref|ZP_06369346.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. FW1012B] gi|283572462|gb|EFC20448.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. FW1012B] Length = 300 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 64/252 (25%), Positives = 110/252 (43%), Gaps = 16/252 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + ++++ + ALVAG++ +R + E K I VL++ LA G Sbjct: 1 MKSKAIPHMILAVILALVAGVLTIRWLGSVRGTGEPGKPAAETKKIEVLVAARPLAKGAR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118 + ++ + E G + D E+ G + I + DPI +KL+ +G Sbjct: 61 LDTTMVRLKPYDPEAAPLGAMRDAS------EVVGRVTAREISQDDPITPDKLLPKGAAG 114 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRV 176 GGL + + GKRA T+ + GG+I P VDV+ + + V+L NI V Sbjct: 115 GGLDASVEPGKRALTVKGTKVMGSGGLITPGCRVDVLSTYNQPGKADEKVTKVILENIPV 174 Query: 177 IAIDHN----IDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + + D R + +T TL +TP +A+ L A + + L LR D + + Sbjct: 175 LTTGTEREVRVGQDGREELANTDFFTLMVTPEEAERLALASDLGNMHLALRKPGDDDVVA 234 Query: 231 SEDSDVWDVQEE 242 + +DV + Sbjct: 235 TAGADVARSLDA 246 >gi|126737255|ref|ZP_01752990.1| CpaB family protein [Roseobacter sp. SK209-2-6] gi|126721840|gb|EBA18543.1| CpaB family protein [Roseobacter sp. SK209-2-6] Length = 285 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 107/252 (42%), Gaps = 9/252 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT--ENPAKFINVLISKGDLAVG 58 M+ + ++V A A ++A + +S H + ++ L G Sbjct: 1 MRAVFGLVLIVGVALAGGAVMMAKKYISAHQAALAHERANRAEVIPTTEIYVAVKQLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDR- 116 +T ++ V +P E++ +G + + + +V I + I K+ Sbjct: 61 ERLTAEAVKKVRWPTESLPEGAFEMEAELFPTAKPSDQRVVLRMIEPNEAILAVKVTKPG 120 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLS 172 + G++S L +G RA + + ++S V G ++P D VDV + + ++ S Sbjct: 121 EDAGITSQLQRGMRAFAIKVDVTSGVSGFLRPGDRVDVYWTGVARGASGQDGEMTRLIES 180 Query: 173 NIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +I +IA+D + +D ++ T T+ + P Q AL AQ+ +LSL L D +S+ Sbjct: 181 SIELIAVDQSASTDVNGAMIARTVTVAVQPEQVAALAQAQTTGRLSLSLVGAGDDTVASA 240 Query: 232 EDSDVWDVQEEG 243 + D + G Sbjct: 241 IEVDQRKLLGLG 252 >gi|260771479|ref|ZP_05880404.1| flp pilus assembly protein RcpC/CpaB [Vibrio furnissii CIP 102972] gi|260613605|gb|EEX38799.1| flp pilus assembly protein RcpC/CpaB [Vibrio furnissii CIP 102972] gi|315181061|gb|ADT87975.1| Flp pilus assembly protein CpaB [Vibrio furnissii NCTC 11218] Length = 249 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 104/252 (41%), Gaps = 17/252 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + ++ ++S +F L A A + + EV + + D+ V+ Sbjct: 3 RNQVILLFLLSVLFGLGAVFFAKQWMDRQVQPQTEVEVVERVPVVV---ASRDIPASTVI 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120 L + + + + E+ G + I + I ++L Sbjct: 60 EEQYLTTRLLEKSWMTENQFSEP------TEVIGKIAESDIYPNEIIVAQRLSIPGEGAT 113 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L++L+P+ KRA T+ ++ V G + P + VDV+ S+ T +L +IRV+A+D Sbjct: 114 LAALIPEDKRAVTIRVNDVIGVAGFLLPGNKVDVLNTIQYSKTSANTTTILKDIRVLAVD 173 Query: 181 HNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 + + ++ TLE++P +A+ L++A+S + LVLR+ + + V Sbjct: 174 QTAKTQENKPIIVRAVTLEVSPKEAEKLLSAKSKGDIQLVLRNPH------AVEEKVVRR 227 Query: 240 QEEGKEIQIIKA 251 + IIK Sbjct: 228 YVPPPSVTIIKG 239 >gi|149186254|ref|ZP_01864568.1| pilus assembly protein CpaB [Erythrobacter sp. SD-21] gi|148830285|gb|EDL48722.1| pilus assembly protein CpaB [Erythrobacter sp. SD-21] Length = 361 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 11/236 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +L+ +V + + A+ ++A + + + ++ VL+++ L G + Sbjct: 1 MDRKKLVLLVGALIVAIGTALVARSMFAGASAPQAQAAAVVESQGPKVLVAQRALPTGTI 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 +T + + + +PEE V D + D + L G +VR P+ G+P+ LV G+ G Sbjct: 61 ITADAIGYQLWPEELVQDAYFLDGEADVSK--LIGTVVRHPVTAGEPVTQGSLVSPGDRG 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---TVTVVLSNIRV 176 L++ L G RA T+ + S V G + P D VD+V+ +++S +L N+RV Sbjct: 119 FLAAALTPGMRAITVPVDAKSGVAGFVFPGDRVDMVLTQAVSGEGQALKASETILRNLRV 178 Query: 177 IAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 +A D + D +V T TLE+TP A+ + AQ++ LSL LR +AD Sbjct: 179 LATDQSTTQTTVDGKTQVRAFRTVTLEVTPTIAEKVAVAQTLGTLSLALRPLADSQ 234 >gi|85859140|ref|YP_461342.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] gi|85722231|gb|ABC77174.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] Length = 295 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 108/248 (43%), Gaps = 19/248 (7%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K L+ + + AL+ ++A + Q P + V+++ D+ V+ Sbjct: 3 KKKHLIFLGGAVFLALIVTLLAYNWI-----QKTATAKAKPQEMQKVVVAAFDVPWSTVL 57 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR--GNG 119 T +++ F +E++ +G+ D ++ G V PI +PI +L G Sbjct: 58 TKDMVRTATFLKESLPNGYYLDPA------QIVGRTVIQPIRTNEPITEARLAPTSIRTG 111 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176 G+++++ KRA ++ + V G I P + VDV++ + + P +VL NI V Sbjct: 112 GVAAVITPSKRAMSVKVDKVVGVSGYIHPGNRVDVLVTLNEQRGEVTAPVTKIVLENILV 171 Query: 177 IAID---HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 +A + E+ TLE+TP + + L A + K+ L LR+ D ++ Sbjct: 172 LASGPEFNETKKGEKPANVDVITLEVTPEEGEKLALASTEGKIQLALRNFGDNEAVATRG 231 Query: 234 SDVWDVQE 241 + + ++ Sbjct: 232 AKIPNLLG 239 >gi|149911410|ref|ZP_01900028.1| Flp pilus assembly protein CpaB [Moritella sp. PE36] gi|149805518|gb|EDM65523.1| Flp pilus assembly protein CpaB [Moritella sp. PE36] Length = 264 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 107/232 (46%), Gaps = 15/232 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + +S +F + A +IA + + P + + S + +G + Sbjct: 1 MNKKTVISVAISIMFGIGAILIAQSWLDTN-------KPSAPENQVYIAFSTMVIPIGTI 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + ++ PE D + D E+ G++ + I D IRLE+L+ +G G Sbjct: 54 IEAKHIKLKILPESMSPDNTVTDPD------EIYGMIAKDTIYIDDIIRLERLLIKGQGS 107 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+SL+ + RA ++ + V G + P + +D++ S + + V+L NI+++AI Sbjct: 108 TLASLISENMRAVSIRVDDVVGVAGFLLPGNRIDILNTVSGNGGATSTEVILHNIKILAI 167 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 D DE + + T+E+ QA+ L+ A++ +L L LR+ D + Sbjct: 168 DQRAAIDENKPQLVRAITVEVNLEQAEILMTARNQGRLQLALRNPTDSHAVD 219 >gi|146276365|ref|YP_001166524.1| Flp pilus assembly protein CpaB-like protein [Rhodobacter sphaeroides ATCC 17025] gi|145554606|gb|ABP69219.1| Flp pilus assembly protein CpaB-like protein [Rhodobacter sphaeroides ATCC 17025] Length = 274 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 102/254 (40%), Gaps = 7/254 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58 M+ ++ +++ A A +A +S V E+ + V ++ L G Sbjct: 1 MRFVFVLVLLLGLGLAGSAVYMAQGYISQTQVALEKEREARKRLGPMVEVFVTNKPLNYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 ++ ++ + +P + + D + V + K +P+ K+ + Sbjct: 61 APLSREDVQKILWPANALPETIFKDETALFP-ETGKPRYVLRQMEKFEPVLAVKVTEP-G 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 L G RA + + ++S V G ++P D VDV + T ++ I ++A Sbjct: 119 VEAGLRLASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGAG-ANGETTRLIEKTIPIVA 177 Query: 179 IDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 +D ++D ++ T T+E++P Q L AQ+ +LSL L D + + D Sbjct: 178 VDQTANADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSLVGRDDTTEADAAPVDT 237 Query: 237 WDVQEEGKEIQIIK 250 + E I +I+ Sbjct: 238 RILIGEPDRIVVIE 251 >gi|254255253|ref|ZP_04948569.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158] gi|124900990|gb|EAY71740.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158] Length = 323 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 23/248 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R +M +VV+ V L A + A + +V ++ DL +G Sbjct: 43 MKNSRAVMMLVVAMVAGLAAVVFASHWLVQTSTSAV----------TSVAVAATDLNLGE 92 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 + N + V++P +V G D + L+G +VR + +G+P+ KL Sbjct: 93 PLGANQIHMVSWPSGSVPTGAFTD------TKALEGRVVRTSLARGEPVIESKLAPIGTK 146 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174 GGLS+++ +G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 147 GGLSAVIAEGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 206 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ Sbjct: 207 LVLAVAQQVSRDDTAPKVVNAVTLEVTPEQAERLDLARSVGTLSLVLRNQIDKQTLNTDG 266 Query: 234 SDVWDVQE 241 + + Sbjct: 267 ATKLTLLG 274 >gi|218887828|ref|YP_002437149.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758782|gb|ACL09681.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 274 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 17/248 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + L+ I ++ V ALVAG++ R + + ++ + + + ++ D+ G Sbjct: 1 MRASSLIQISLALVLALVAGVLVFRFMQVNRAAAPQM---AAPEQVELAVAAADVPRGAK 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGN 118 + ++ F + + G P G ++ + G+PI +L+ + Sbjct: 58 LAAEQIKLAPFLKSSAPSGAFTKDTLP------VGRVLSSAVAAGEPITEARLLQDGASH 111 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIR 175 GG+S+L+ G RA + + + G I+P + VDV++ R+ +VL N+R Sbjct: 112 GGVSTLIAPGMRAVAVKGNKVLGLSGFIRPGNRVDVLVTLDDETREKSKSRTKLVLENVR 171 Query: 176 VIAIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 V+A + + S+ TLE++P QA+ L A S +L LR+ AD + Sbjct: 172 VLATGTELKQEGDDTSTSSVDVYTLEISPPQAEPLALAASRGELHFALRNPADDGTVLTP 231 Query: 233 DSDVWDVQ 240 +DV Sbjct: 232 GTDVPGTL 239 >gi|17545375|ref|NP_518777.1| pilus assembly transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427667|emb|CAD14186.1| probable pilus assembly cpab transmembrane protein [Ralstonia solanacearum GMI1000] Length = 288 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 118/259 (45%), Gaps = 33/259 (12%) Query: 1 MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK R++ ++++ + L A + A R + I + + V ++ D+ +G Sbjct: 1 MKNLRILSMLLIATIAGLAAMLFASRWL----------IQQGNSGTTKVAVAAVDVNLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 ++P + V +P ++ G I D H + G + R + G+P+ KL Sbjct: 51 RLSPEFIRLVDWPAASLPPGAISDEHAID------GRVTRTSLSPGEPVLESKLTPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--------------ERK 164 GGLS+++ GKRA T+ ++ V G P +VD+++ E Sbjct: 105 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQETPDGKPAKGAQADREEH 164 Query: 165 PTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 +VL I V+A+ ++ DE + V + TLE+TP +A+ L A+SV LSLVLR+ Sbjct: 165 SISKIVLEKILVLAVAQEVNRDETKPKVVNAVTLEVTPDEAEKLDLARSVGTLSLVLRNQ 224 Query: 224 ADLNPSSSEDSDVWDVQEE 242 D P + + + +E Sbjct: 225 VDPRPVDTAGATKSTLLKE 243 >gi|239908022|ref|YP_002954763.1| Flp pilus assembly CpaB domain protein [Desulfovibrio magneticus RS-1] gi|239797888|dbj|BAH76877.1| Flp pilus assembly CpaB domain protein [Desulfovibrio magneticus RS-1] Length = 300 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 18/252 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + I+++ + AL AG++ +R + E + A + V+++ + G Sbjct: 1 MKTKAVPHIILAVILALTAGVLTIRWLGSVRAPKVE-QAKPAAPKVEVVVAARAIPKGGR 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR--GN 118 + ++++ F E G + DV QE G + I DPI +KL+ + + Sbjct: 60 LDASMVKSKGFEAEAAPQGALRDV------QEAYGRISARDISPDDPITPDKLMPKGATS 113 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---LSERKPTVTVVLSNIR 175 GGL + + GKRA T+ S GG+I P VDV++ + ++L N+ Sbjct: 114 GGLDASVAPGKRAFTIKGSKIMGSGGLITPGCRVDVLVTYPVPNGKNDEKINKIILENVP 173 Query: 176 VIAIDHN----IDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 ++ I D R + +T TL + P +A+ L A L L LR+ D + Sbjct: 174 ILTTGTERETKIGKDGREELANTDFYTLMVAPEEAERLALASDTGSLHLALRTPGDADIV 233 Query: 230 SSEDSDVWDVQE 241 ++ +DV E Sbjct: 234 TTSGADVAKSLE 245 >gi|220923695|ref|YP_002498997.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] gi|219948302|gb|ACL58694.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] Length = 264 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 75/263 (28%), Positives = 125/263 (47%), Gaps = 20/263 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + RL ++V+ + A +A+ L V +VL+ +LA G +T Sbjct: 1 MLRLCLLIVALGAGIAAAWLAVSL--RDQPVAAVVPAPVQPATQDVLVVSTELAQGERLT 58 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + W +PE + ++ +P A+ E G +R + G+P++ KL G L+ Sbjct: 59 KENMRWQPWPESALNSAYVTRSARPAALDEFAGSTLRSRMAPGEPVQDGKLAGLNAGFLA 118 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-----SLSERKPTVTVVLSNIRVI 177 ++LP GKRA + IS + GG I P+D VDV+ R+ +L N+ V+ Sbjct: 119 TVLPSGKRAVAVRISAENTAGGFILPSDRVDVIHTFAPQAQGEGAREHRSRTILKNVPVL 178 Query: 178 AIDHNIDSDERV--------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 AID +D ++ ++G TATLEL QA+ L AA++ LSL LRS AD N Sbjct: 179 AIDQTVDEAQKADKGKGKSVVIGKTATLELDSRQAEILAAAEAAGTLSLSLRSAADSNEV 238 Query: 230 SSEDSDVWDVQEEGKEIQIIKAG 252 + ++ E + +++I+ G Sbjct: 239 PTAATE-----ERIQTVRVIRGG 256 >gi|77919344|ref|YP_357159.1| Flp pilus assembly protein CpaB [Pelobacter carbinolicus DSM 2380] gi|77545427|gb|ABA88989.1| Flp pilus assembly protein CpaB [Pelobacter carbinolicus DSM 2380] Length = 272 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 107/246 (43%), Gaps = 9/246 (3%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K ++ + ++ +F ++A I+ R +S Q E ++++ D+ +G + Sbjct: 3 KYGTIIALALAVIFGVIAVILVNRWLSSKVSQEATTPRE-SIAMTEIVVAAADVNIGTRL 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 +L +P+ +V G +D+ +++ G + ++ G PI +L +G G Sbjct: 62 DQTLLAMAQWPKASVPKGAFEDI------EQVVGRVSVSKMVTGTPILAAELAAPNSGAG 115 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L +L+ G RA + ++ VGG I PN VD++ + S+R L + V+AI Sbjct: 116 LVALIKPGMRAMAIKVNEVVGVGGFILPNTFVDIISLDERSKRTKVADTFLHKVEVLAIA 175 Query: 181 HNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 + + V T TLELTP A+ LV + LVLR+ D + V Sbjct: 176 QETFIEEGKPKVVRTVTLELTPEDAEKLVEKTHEGPIQLVLRNPLDEKETPPPPKKVVKR 235 Query: 240 QEEGKE 245 + Sbjct: 236 TRVRRA 241 >gi|90411207|ref|ZP_01219220.1| hypothetical Flp pilus assembly protein [Photobacterium profundum 3TCK] gi|90328053|gb|EAS44374.1| hypothetical Flp pilus assembly protein [Photobacterium profundum 3TCK] Length = 266 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 63/267 (23%), Positives = 116/267 (43%), Gaps = 30/267 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHV------QTEEVITENPA---------KFI 46 K + + +S + L A I+A + + E +T+ + Sbjct: 3 KGKIFLTLFISIMMGLGALILANNWLQSKQANLNSQTKPSEPVTQVEVQIKEVMKEEPKV 62 Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 + ++ + +G + L +P + V +++ G+L R I +GD Sbjct: 63 PRVTAQQRIPLGTKIEAKHLSIEYYPTDLVS------TKGYETPEQVVGMLARNEIFEGD 116 Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 +R E+LV G G L++L+ RA T+ ++ V G + P D VDV+ + S Sbjct: 117 LLRKERLVTPGEGTTLAALISPNMRAVTIRVNDVIGVAGFLLPGDFVDVIYTKEKSNN-- 174 Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 VL I+++A+D +D+ + ++ TLELTP QA++LV A+S +L L LR+ Sbjct: 175 -AVTVLKKIKILAVDQTARTDDSKPVIVRAVTLELTPKQAESLVTAKSKGELQLSLRNPN 233 Query: 225 DLNPSSSEDSDVWDVQEEGKEIQIIKA 251 D+ ++ + + IIK Sbjct: 234 DIEKIKTKRVY----RRTTDAVTIIKG 256 >gi|157961833|ref|YP_001501867.1| SAF domain-containing protein [Shewanella pealeana ATCC 700345] gi|157846833|gb|ABV87332.1| SAF domain protein [Shewanella pealeana ATCC 700345] Length = 272 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 113/237 (47%), Gaps = 16/237 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ +++S VF + A +A + TE A NV+ ++ +G + Sbjct: 1 MNNKTVLFVILSLVFGVTAVYLAQNWL------KTNTKTEAVASTSNVMTMVTEVPLGTI 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + L + + +G I D+ E +G +V+ + +G+ +R E++ +G G Sbjct: 55 IERKHLALTPVADNLIPEGAITDI------TEAEGFVVKHRLYQGEVLRKERITPKGEGS 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+SL+ RA T+ ++ V G + P + VD++ + + +VLSN++++AI Sbjct: 109 TLASLITPTMRAVTIRVNDVVGVAGFLLPGNRVDIINIFTTP--SLKTDIVLSNVKILAI 166 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 D +DE + ++ TLEL+ QA+ L+ A+S L L LR+ D D + Sbjct: 167 DQKASNDENKPVLVRAVTLELSLEQAETLMIAKSRGSLQLALRNPNDTAVIELADIE 223 >gi|259417281|ref|ZP_05741200.1| Flp pilus assembly protein CpaB [Silicibacter sp. TrichCH4B] gi|259346187|gb|EEW58001.1| Flp pilus assembly protein CpaB [Silicibacter sp. TrichCH4B] Length = 267 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 94/235 (40%), Gaps = 11/235 (4%) Query: 21 IIAMRLVSPHHVQTEEVIT--ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 ++A + + + E +NV ++ L G +T + VA+PE + + Sbjct: 1 MMAKNYIEAYQNALAHERSNREAAVPTVNVFVANKTLTYGEELTKENVRAVAWPENALPE 60 Query: 79 GFIDDVHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDI 136 G + V + K +P+ K+ + G++S L KG RA + + Sbjct: 61 GIFSEESDLFPSDSPKDARYVLRTMEKNEPLLAVKITAPGEDAGITSRLEKGMRAFAIRV 120 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSER------KPTVTVVLSNIRVIAIDHNIDSD-ERV 189 ++S V G ++P D VDV R ++ SNI +IA+D D Sbjct: 121 DVASGVSGFLRPGDRVDVYWSGQPPARSGQERSGEVTRLIQSNIELIAVDQMSGGDFSNA 180 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 ++ T T++ P + L AQS +LSL L D +S + D + G Sbjct: 181 IIARTVTVKAQPEEVARLAQAQSTGRLSLALVGAQDDTIASLVEVDQRSLFGLGD 235 >gi|134291858|ref|YP_001115627.1| SAF domain-containing protein [Burkholderia vietnamiensis G4] gi|134135047|gb|ABO59372.1| SAF domain protein [Burkholderia vietnamiensis G4] Length = 281 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 69/248 (27%), Positives = 122/248 (49%), Gaps = 23/248 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R ++ +VV+ V L A + A R + +V ++ DL +G Sbjct: 1 MKNSRAILMLVVAMVAGLAAVVFASRWLMNTSN----------GSVTSVAVATTDLNLGE 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 + PN + V++P +V G D +EL+G +VR + +G+P+ KL Sbjct: 51 PLGPNQIHMVSWPAGSVPTGAFTD------TKELEGRVVRTSLARGEPVIESKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174 GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDHKTLTTDG 224 Query: 234 SDVWDVQE 241 + + Sbjct: 225 ATKMTLLG 232 >gi|163742212|ref|ZP_02149600.1| CpaB family protein [Phaeobacter gallaeciensis 2.10] gi|161384542|gb|EDQ08923.1| CpaB family protein [Phaeobacter gallaeciensis 2.10] Length = 266 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 10/233 (4%) Query: 21 IIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 ++A ++ + + ++V I+ L G +T + V +PE + + Sbjct: 1 MMAKNYITAYQNELARERASRGENIPLVDVFIANTQLKYGERLTKEHIRSVRWPENAIPE 60 Query: 79 GFIDDVHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDI 136 G + Q D +V + K + I K+ + G++S L KG RA + + Sbjct: 61 GAFLTMDALFPPQYPDDHRVVLRRMEKDEAILAVKVTKPGEDAGITSRLSKGMRAFAIRV 120 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIRVIAIDHNIDSD-ERVL 190 +SS V G ++P DHVDV SL++ ++ +NI +IA+D D + + Sbjct: 121 DVSSGVSGFLRPGDHVDVYWTGSLNDQNGGRNGEFTRLIQTNIELIAVDQTAGGDLDGAV 180 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243 + T T + P Q AL AQS +LSL L D +S + D + G Sbjct: 181 IARTVTAAVRPEQVAALAQAQSTGRLSLSLVGAGDDTVASVIEVDQRSLLGLG 233 >gi|85373132|ref|YP_457194.1| pilus assembly protein CpaB [Erythrobacter litoralis HTCC2594] gi|84786215|gb|ABC62397.1| pilus assembly protein CpaB [Erythrobacter litoralis HTCC2594] Length = 371 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 17/253 (6%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 +A R + E + VL+++ L VG ++T + L + +PEE V D + Sbjct: 21 MAARSMFAGASAPEATAAVQEPQGPKVLVAQRGLPVGTIITADALGFQMWPEELVQDAYF 80 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISS 140 + + + +L G +VR P+ G+P+ LV G+ G L++ L G RA T+ +S ++ Sbjct: 81 IEGE--SDITQLLGTVVRHPVTAGEPLTQGTLVSPGDRGFLAAALGPGMRAITVPVSANT 138 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKP---TVTVVLSNIRVIAIDHNIDSDERVLVG----- 192 V G + P D VD+++ +++ + +L N+RV+A D + Sbjct: 139 GVAGFVFPGDRVDLMLTQAVKGEETDLKATETILRNLRVLATDQTTEQTTNEAGKTVVRA 198 Query: 193 -STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS-----SSEDSDVWDVQEEGKEI 246 T TLE+TP A+ + AQ++ LSL LRSIAD +S D + D +E Sbjct: 199 FRTVTLEVTPKIAEKVAVAQTLGTLSLALRSIADNQAELERAIASGDVKIPDGASPEEEE 258 Query: 247 QIIKAGVIVNKDG 259 +II+A + DG Sbjct: 259 RIIQAAMNRPNDG 271 >gi|116249980|ref|YP_765818.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254628|emb|CAK05702.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 271 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 109/267 (40%), Positives = 158/267 (59%), Gaps = 6/267 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ V A +AG++AM++ V T+ +N+L+S +L+VG Sbjct: 1 MKPARLIILAVAVVAAGLAGLLAMQMAGSGGVVTQVRSVVEKEPTVNILVSSANLSVGAR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W+A+P+ V G I + +P+A+++L G +VR+PI +G+PIR EK+ D + Sbjct: 61 LDDQSVHWMAWPQGGVVPGLITEADKPDAVKDLQGAVVRLPIFEGEPIRPEKIADSSSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR K VLSN+RV+AI Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGAEADKLITETVLSNVRVLAI 180 Query: 180 DHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235 D I D + +VG+TATLELTP Q K L AQ +A +LSL LRS+AD + +D Sbjct: 181 DQQIQEKDDGSKSVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240 Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDGEG 261 + G IQ+IK+G IV Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDASAA 267 >gi|170692565|ref|ZP_02883727.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M] gi|170142221|gb|EDT10387.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M] Length = 278 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 118/250 (47%), Gaps = 25/250 (10%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R ++ + ++ + L A A R + V ++ ++++G Sbjct: 1 MKTSRAIVMLGMALLAGLAAVGFASRWLLQTSSSA----------LTPVAVATAEVSLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 + ++ V +P +V G D + LDG +VR + G+P+ KL + Sbjct: 51 PLNSTMIRTVNWPTASVPPGAFKDP------KALDGRVVRASLEPGEPVIESKLAPQGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRSLSERKPTVTVVLS 172 GGLS+++ +GKRA T+ ++ V G P ++VDV++ ++ ++ +VL Sbjct: 105 GGLSAVIGEGKRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPEAKTADPQQSISKIVLE 164 Query: 173 NIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 I V+A+ + D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D + Sbjct: 165 KILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDLARSVGSLSLVLRNQIDDRALPT 224 Query: 232 EDSDVWDVQE 241 + + + Sbjct: 225 GGATKFTLLG 234 >gi|163745847|ref|ZP_02153206.1| CpaB family protein [Oceanibulbus indolifex HEL-45] gi|161380592|gb|EDQ05002.1| CpaB family protein [Oceanibulbus indolifex HEL-45] Length = 286 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 104/251 (41%), Gaps = 10/251 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58 M+ + ++V A A +A +S + + V +++ L G Sbjct: 1 MRAVFGLVLLVGIALAGGAVYLAKDRISQYQAANAQAQAALAQVVPTQTVWVAEKPLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117 +T + V +PE + +G + D +V I K + I K+ + Sbjct: 61 QPLTREDVRAVNWPENAIPEGSFIEETLLFPENTKDHRIVLRNIEKDEAIMAVKVTEPGE 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVVLS 172 + GL+S L +G RA T+ + +SS V G ++P D VDV S ++ S Sbjct: 121 DSGLTSRLARGMRAFTIKVDVSSGVSGFLRPGDRVDVYWTGRVNVGNQSSNGDVTKLIES 180 Query: 173 NIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 +++IAID + D+ E + T T+ + P Q AL AQS KLSL L D + Sbjct: 181 AVQLIAIDQSADALVMEEASIAKTVTVAVKPQQVAALAQAQSTGKLSLSLVGTNDDTVAE 240 Query: 231 SEDSDVWDVQE 241 + + D + Sbjct: 241 AIEVDQRSLLG 251 >gi|295700371|ref|YP_003608264.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1002] gi|295439584|gb|ADG18753.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1002] Length = 276 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 23/248 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGI-IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R + ++ V A +A + A R + +V ++ D+++G Sbjct: 1 MKNSRALVMLTIAVLAGLAAVSFASRWLLQTSSAAV----------TSVAVASSDISLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 + N++ V++P +V G D + L+G ++ + G+P+ KL + Sbjct: 51 PLNQNLIHMVSWPTSSVPPGAFADS------KALEGRVLLTSLAPGEPVLESKLAPQGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNI 174 GGLS+++ +G RA T+ ++ V G P ++VDV++ + +VL I Sbjct: 105 GGLSAVIGEGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQQANKTDASQSISKIVLEKI 164 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D S+ Sbjct: 165 LVLAVAQRVSRDDTAPKVVNAVTLEVTPEQAEKLDLARSVGTLSLVLRNQVDKQTPSTGG 224 Query: 234 SDVWDVQE 241 + + + Sbjct: 225 ATKLTLLD 232 >gi|116748929|ref|YP_845616.1| SAF domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697993|gb|ABK17181.1| SAF domain [Syntrophobacter fumaroxidans MPOB] Length = 292 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 63/268 (23%), Positives = 125/268 (46%), Gaps = 14/268 (5%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF-INVLISKGDLAVGMV 60 + + + ++ V ALVA ++ + V V+TE + V ++ DL G Sbjct: 3 RFRAIFPLALAIVLALVASVVVYKWVQMKTGVQTTVVTEKAEPGGVQVALASADLPWGTK 62 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGN 118 +T +++ +P +++ G+ D + ++G ++ P+ +G+ + KL Sbjct: 63 LTREMVKMAEYPPKHLPAGYFSDPAK------IEGRVLITPVKQGEQLLESKLAPLSVTT 116 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRV 176 GG+S+++ GKRA + + G I+P + VDV++ ++ K T VVL N++V Sbjct: 117 GGVSAVVSVGKRAIAVAGDKVIGLAGFIQPGNFVDVLVTIRDTQEKTPSTSKVVLENVKV 176 Query: 177 IAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 +A ID + TLE+TP +A+ L A S+ KL LR++ D + + Sbjct: 177 LATGTVIDKKAGTEPGPVDVFTLEVTPEEAERLAFAASLGKLHFALRNVTDTEVVYTMGT 236 Query: 235 DVWDVQEE-GKEIQIIKAGVIVNKDGEG 261 + D + ++++ A +V + E Sbjct: 237 TIADALDAYRPRMKMVSAQPVVKSEPEA 264 >gi|212635454|ref|YP_002311979.1| Flp pilus assembly protein CpaB [Shewanella piezotolerans WP3] gi|212556938|gb|ACJ29392.1| Flp pilus assembly protein CpaB [Shewanella piezotolerans WP3] Length = 267 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 119/263 (45%), Gaps = 17/263 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M L+ +V+S VF + A +A + E + V+ ++ +G + Sbjct: 1 MNNKTLLFVVLSLVFGVTAVYLAQNWLKS------NTKDEVISTTGTVITMATEVPLGAI 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + L PE + G + D + E +G +V+ + G+ +R E+L +G G Sbjct: 55 LQRKHLSLTTLPESLIPKGAVLD------LAEAEGKVVKQKLYAGEVLRAERLTAKGEGS 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+SL+ RA T+ ++ V G + P + VD++ + S +VLSN++++AI Sbjct: 109 TLASLITPTMRAVTIRVNDVVGVAGFLLPGNRVDIINIFKSS--GLKTDIVLSNVKILAI 166 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D +DE + ++ TLEL+ QA+ L+ A+S L L LR+ D + D Sbjct: 167 DQRASNDENKPVLVRAVTLELSLDQAEILMIAKSRGSLQLALRNPNDKAVIELAEL-EED 225 Query: 239 VQEEGKEIQIIKAGVIVNKDGEG 261 + +E+ +V +G G Sbjct: 226 EDSKNREVAPQLVQTVVKSEGNG 248 >gi|325525577|gb|EGD03367.1| Flp pilus assembly protein CpaB [Burkholderia sp. TJI49] Length = 277 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 125/248 (50%), Gaps = 23/248 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK++R +M +V++ + A + A R + + + + + ++ DL +G Sbjct: 1 MKISRAVMMLVIAMIAGFAAVVFASRWL----------VQTSTSSVTPIAVAATDLNLGE 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 + PN + V++P +V G D +ELDG +VR + +G+P+ KL Sbjct: 51 PLGPNQVHTVSWPTGSVPPGAFTDP------KELDGRVVRTSLARGEPVIESKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174 GGLS+++ +G RA T+ ++ V G P ++VDV++ + S+ + +VL +I Sbjct: 105 GGLSAVIAEGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQAQQGKSDGQSISKIVLEHI 164 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQIDKQTLNTDG 224 Query: 234 SDVWDVQE 241 + + Sbjct: 225 ATKLTLLG 232 >gi|16263309|ref|NP_436102.1| CpaB2 pilus assembly protein [Sinorhizobium meliloti 1021] gi|14523988|gb|AAK65514.1| CpaB2 pilus assembly protein [Sinorhizobium meliloti 1021] Length = 263 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 121/240 (50%), Gaps = 11/240 (4%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + R++ ++++ A +A + + EV VL++ +L G V+ Sbjct: 1 MIRIVILLLALASGGAASWLA---LGTGDQRAVEVAEVQETPSQEVLVAAAELKRGAVIE 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 N L W + E + FI +P+A L G L + G+PIR +KL G G LS Sbjct: 58 ENQLRWQPW-EGEIPPVFISRSSRPDATTALKGSLALSGFVAGEPIRDDKLAQGGTGYLS 116 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVI 177 SLLP GKRA + ++ S GG I PNDHVDV+ S K +LSNIRV+ Sbjct: 117 SLLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHTVARPDASGDAGKVVSRAILSNIRVL 176 Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+D + D ++G TATLE+ P Q A+ AA++ +SL LR+I D + +S +++ Sbjct: 177 AVDQTVSQASDGASVIGKTATLEVDPEQISAVAAAEASGTVSLALRAITDNHEASVVEAE 236 >gi|261252086|ref|ZP_05944659.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] gi|260935477|gb|EEX91466.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] Length = 247 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 107/252 (42%), Gaps = 19/252 (7%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + ++ +++S VF L A A + + EV I + ++ G V+ Sbjct: 3 RNQVILLLLLSIVFGLGAVFFAKQWMDRQLQPQVEVEVVEREPVIV---AAQEIFAGSVI 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 + ++ D Q +EL G + I G+ I +L G G Sbjct: 60 EEQHVTSRLLEKDW------RDELQFTKAEELVGQVAATTIYPGEIIHPNRLSSSGEGST 113 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L+SL+P+ KRA T+ ++ V G + P + VD++ + + + VL I+V+A+D Sbjct: 114 LASLIPENKRAVTIRVNDVIGVAGFLLPGNKVDILNTVKYGKNSASTSTVLKEIKVLAVD 173 Query: 181 HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 S E + ++ TLE+TP QA+ L++AQS + L LR+ + Sbjct: 174 QTARSKENKPVIVRAVTLEVTPRQAEKLLSAQSRGNIQLTLRNPHEEEKV--------VK 225 Query: 240 QEEGKEIQIIKA 251 + + IIK Sbjct: 226 RYVAPSVTIIKG 237 >gi|103486618|ref|YP_616179.1| Flp pilus assembly CpaB [Sphingopyxis alaskensis RB2256] gi|98976695|gb|ABF52846.1| Flp pilus assembly CpaB [Sphingopyxis alaskensis RB2256] Length = 345 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 17/242 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++M IV + V A+ A ++ +L++ L VG + Sbjct: 1 MDTRKIMLIVGALVIAIGAAFGVNYMMRGAGAPAARAAAAPEITGPMILVATRQLPVGTI 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 V P+ + +P++ V + + + L G +VR PI G P+ LV + G Sbjct: 61 VGPDSFRFQPWPKDLVENAYFVKEKT--DVNTLVGTVVRHPITAGQPLTQGALVHPNDRG 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---------SLSERKPTVTVV 170 L++ L G RA T+ +S V G + P D VDVV+ + ++ T + Sbjct: 119 FLAAALGPGMRAITVKVSQEQGVAGFVFPGDRVDVVLTQTIEVEEGSTYPDDQIFTAETI 178 Query: 171 LSNIRVIAIDHNIDSDERVLVG-----STATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 + NIRV+A D D+++ + TLE TP A+ + AQ + +LSL LR +A+ Sbjct: 179 VRNIRVLATDQRYDAEDETGKTPVRTFGSVTLEATPEIAEKIAVAQGMGRLSLALRPLAE 238 Query: 226 LN 227 Sbjct: 239 SA 240 >gi|83859356|ref|ZP_00952877.1| Flp pilus assembly CpaB [Oceanicaulis alexandrii HTCC2633] gi|83852803|gb|EAP90656.1| Flp pilus assembly CpaB [Oceanicaulis alexandrii HTCC2633] Length = 268 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 84/261 (32%), Positives = 132/261 (50%), Gaps = 5/261 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGM 59 M RL+ + V+ + A+ A + + P V+ + A + VL++ D++ Sbjct: 1 MNAVRLIVLAVAALAAVFAALFVRSAMQPAAAPAPVVVEQAAAPEVVQVLVAARDMSPSS 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 V+ W +P E V FI +P+AM EL G + R + G+PI KLV G Sbjct: 61 RVSGADFRWTNWPVEAVIPAFITREARPDAMDELSGAVTRAAFVDGEPILPGKLVQPGEA 120 Query: 120 G-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 G +++++ G RA + IS S GG I PND VDV++ S + V++ N+RV+A Sbjct: 121 GFMAAVIDPGMRAVAVPISAESGAGGFILPNDRVDVLVTTSARDMGYISEVLVENVRVLA 180 Query: 179 IDHN-IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN--PSSSEDSD 235 ID +D E V++GSTATLELTP Q ++ + + L LRS+AD P +D Sbjct: 181 IDQTYVDDGEGVVLGSTATLELTPQQTSSVALGVAEGDIVLALRSVADREGGPRLPNGAD 240 Query: 236 VWDVQEEGKEIQIIKAGVIVN 256 + G+E++II+ G Sbjct: 241 DEAGERRGREVRIIRYGAEQR 261 >gi|197295152|ref|YP_002153693.1| putative flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|195944631|emb|CAR57235.1| putative flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 279 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 23/248 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R +M +VV+ + L A + A + + +V ++ DL +G Sbjct: 1 MKNSRAVMMLVVAMIAGLAAVVFASHWLMQTSTNSV----------TSVAVATTDLNLGE 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 + PN + V++P +V G D + L+G +VR + +G+P+ KL Sbjct: 51 PLGPNQIHMVSWPSGSVPTGAFTD------TKALEGRVVRTSLSRGEPVIESKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174 GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLNTDG 224 Query: 234 SDVWDVQE 241 + + Sbjct: 225 ATKLTLLG 232 >gi|296156488|ref|ZP_06839326.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] gi|295893087|gb|EFG72867.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] Length = 269 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 119/251 (47%), Gaps = 25/251 (9%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 ++++ + L A + A R + ++++ V+++ D+ +G + P+ L+ Sbjct: 1 MLLIATLAGLTAVVFASRWM----------VSQSSNATTKVVVAATDINLGQRIGPDFLK 50 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126 +P +V G D+ + + G +++ +L G+P+ KL G GGLS+++ Sbjct: 51 LTEWPSNSVPPGSFTDIQKLD------GRVLKESLLHGEPVLEAKLTPVGTLGGLSAVIG 104 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAI 179 +GKRA T+ ++ V G P ++VD+++ R P +VL I V+A+ Sbjct: 105 EGKRAITVRVNDVIGVAGFALPGNYVDIIVNTQKDARDPGTQRDQNISKIVLEKILVLAV 164 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 + DE + V TLE++P QA+ + A+S+ LSLVLR+ D + + Sbjct: 165 AQEVGRDETKPKVVDAVTLEVSPEQAEKIDLARSIGTLSLVLRNQIDPQAIDTAGATKAT 224 Query: 239 VQEEGKEIQII 249 + + + + Sbjct: 225 LLKTPVAVAPV 235 >gi|218671060|ref|ZP_03520731.1| Flp pilus assembly protein CpaB [Rhizobium etli GR56] Length = 214 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 95/210 (45%), Positives = 133/210 (63%), Gaps = 6/210 (2%) Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G + + + W+A+P++ V GFI + +P+A+++L G +VR+PI +G+PIR EK+ D Sbjct: 1 GARLGDDTVHWMAWPKDGVVQGFITEADKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSS 60 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRV 176 + LSSLLP GKRA +IS+++ GG I PND VDV+MVR +E K VLSN+RV Sbjct: 61 SRILSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRV 120 Query: 177 IAIDHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSE 232 +AID I D + +VG+TATLELTP Q K L AQ +A +LSL LRS+AD + Sbjct: 121 LAIDQQIQEQDDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTS 180 Query: 233 DSDVWDVQEEGKE-IQIIKAGVIVNKDGEG 261 +D + G IQ+IK+G IV GE Sbjct: 181 AADYLLSGDNGSAIIQVIKSGSIVTDAGEA 210 >gi|148557762|ref|YP_001265344.1| SAF domain-containing protein [Sphingomonas wittichii RW1] gi|148502952|gb|ABQ71206.1| SAF domain [Sphingomonas wittichii RW1] Length = 332 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 14/241 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +L+ ++++ V A ++ ++A + + V ++ L VG + Sbjct: 1 MDARKLLLLIMALVMAGISAVVARSMFGGNSEAEAAPAAAPQPSGPEVAVAVRPLPVGTI 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + P + +P E V + + + L+G +VR I G P+ LV G+ G Sbjct: 61 IGPESFRYQRWPAELVSKTYFIKGE--SDLAALNGSVVRYAITAGAPVTQGALVKPGDRG 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVLSNI 174 L++ L G RA T+ +S S V G + P D VD+++ + + ++ NI Sbjct: 119 FLAAALGPGMRAVTISVSAQSGVAGFVFPGDRVDLMLTQEVPGGGDGPPLKAAETIIRNI 178 Query: 175 RVIAIDHNI----DSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 RV+A D D + + +V +T TLE TP A+ + AQ++ +LSL LRSIAD Sbjct: 179 RVLAADQRTDKTVDEEGKTVVANTSNVTLEATPKIAEKIAVAQTIGQLSLALRSIADDRA 238 Query: 229 S 229 Sbjct: 239 E 239 >gi|90419763|ref|ZP_01227672.1| Flp pilus assembly protein CpaB [Aurantimonas manganoxydans SI85-9A1] gi|90335804|gb|EAS49552.1| Flp pilus assembly protein CpaB [Aurantimonas manganoxydans SI85-9A1] Length = 293 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 128/229 (55%), Gaps = 11/229 (4%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E P K VL++ DL++G V L+W ++PE+ + I +P+A++ L Sbjct: 58 TAAPAEPPIKLAEVLVTSRDLSMGEAVDEA-LDWQSWPEDGIGPTLIRKSDRPDALETLK 116 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 G L R G+P+R KL+ G +S++LP GKRA + I+ ++ GG + PNDHVDV Sbjct: 117 GSLARQSFFAGEPVRESKLIRSDQGFMSAVLPAGKRAVAVQIAAETSAGGFVLPNDHVDV 176 Query: 155 VMVRS-----LSERKPTVTVVLSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKAL 207 +M R + VL N+RV+AID I E+V+VGSTATLE+ P QA+AL Sbjct: 177 IMTRRVSSSENRGDQVLTETVLRNLRVLAIDQTIQEKDGEKVVVGSTATLEVDPEQAEAL 236 Query: 208 VAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGK--EIQIIKAGV 253 AAQ +A +L L LRS+AD P S + QE + +I++++ G Sbjct: 237 TAAQQIADRLVLSLRSLADSVPGSPGYAAFLLAQENARNGKIRVVRYGQ 285 >gi|83950065|ref|ZP_00958798.1| CpaB family protein [Roseovarius nubinhibens ISM] gi|83837964|gb|EAP77260.1| CpaB family protein [Roseovarius nubinhibens ISM] Length = 281 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 107/258 (41%), Gaps = 13/258 (5%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 ++V A A +A ++ + + + + K ++V ++K LA G +T + Sbjct: 1 MIVGIGLAGFAVYMAKSVIQGYRTELNSARAANQPAIKTVDVYVAKRALAYGDRLTKEDV 60 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLL 125 V +P + +G V + + V + K + + K+ + G+ + L Sbjct: 61 VQVKYPARALPEGVFQTVEDLFPEGQKEFRTVLRAMEKYEALLGVKVTAPGEDAGILTKL 120 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---------SLSERKPTVTVVLSNIRV 176 +GKRA + + +S V G ++P D VDV ++L+ + + Sbjct: 121 ERGKRAFAIKVDTTSGVAGFLRPGDRVDVYWTGNTGRGGLRTEGDSTGDVTKLILTGVNL 180 Query: 177 IAIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 IA+D + D ++ T T+ ++P + AL AQ+ KL+L L + + + D Sbjct: 181 IAVDQSSNDQTTGAILARTVTVAVSPQEVAALAQAQATGKLTLSLLGTKEDTIAEVIEVD 240 Query: 236 VWDVQEEGKEIQIIKAGV 253 + + + ++A V Sbjct: 241 QSSLLGLQQVQKQVQAPV 258 >gi|157375509|ref|YP_001474109.1| Flp pilus assembly protein CpaB-like protein [Shewanella sediminis HAW-EB3] gi|157317883|gb|ABV36981.1| Flp pilus assembly protein CpaB-like protein [Shewanella sediminis HAW-EB3] Length = 274 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 114/260 (43%), Gaps = 15/260 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ +++S +F + A +A + NP +V+ + +G + Sbjct: 1 MNNKTILFVLLSLIFGVAAVFLAQSWL------KTNTEAVNPQVSTSVITMATLVPLGTI 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + L P + + I + +G++V+ + G+ +R E++ +G G Sbjct: 55 LERKHLILTPMPNTVIPETAIKT------FEGAEGMVVKQNLYAGEVLRSERITVKGEGS 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+SL+ RA T+ ++ V G + P + VDV+ + + VVL+N++++AI Sbjct: 109 TLASLISPQMRAVTIRVNDVVGVAGFLLPGNRVDVLNLFKR-GGRLQTDVVLANVKILAI 167 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D +DE + + TLEL QA+ L+ A+ KL L LR+ D + Sbjct: 168 DQRSSNDENKPKLVRAVTLELNLEQAEVLMIAKGRGKLQLALRNPNDSTKVELALINEAK 227 Query: 239 VQEEGKEIQIIKAGVIVNKD 258 + + ++ +V+KD Sbjct: 228 DTIDSEPTPAVRPMPVVSKD 247 >gi|307304372|ref|ZP_07584123.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C] gi|307318079|ref|ZP_07597515.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83] gi|306896120|gb|EFN26870.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83] gi|306902574|gb|EFN33168.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C] Length = 263 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 121/240 (50%), Gaps = 11/240 (4%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + R++ ++++ A +A + + EV VL++ +L G VV Sbjct: 1 MIRIVILLLALASGGAASWLA---LGTGDQRAVEVAEVQETPSQEVLVAAAELKRGAVVE 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 N L W + E + FI +P+A L G L + G+PIR +KL G G LS Sbjct: 58 ENQLRWQPW-EGEIPPVFISRSSRPDATTALKGSLALSGFVAGEPIRDDKLAQGGTGYLS 116 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVI 177 SLLP GKRA + ++ S GG I PNDHVDV+ S K +LSNIRV+ Sbjct: 117 SLLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHTVARPDASGDAGKVVSRAILSNIRVL 176 Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+D + D ++G TATLE+ P Q A+ AA++ +SL LR+I D + +S +++ Sbjct: 177 AVDQTVSQASDGASVIGKTATLEVDPEQISAVAAAEASGTVSLALRAITDNHEASVVEAE 236 >gi|56477529|ref|YP_159118.1| pilus assembly transmembrane protein [Aromatoleum aromaticum EbN1] gi|56313572|emb|CAI08217.1| pilus assembly transmembrane protein [Aromatoleum aromaticum EbN1] Length = 283 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 114/250 (45%), Gaps = 24/250 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + ++V+ + L A ++ R + ++ + ++ +L +G Sbjct: 1 MKAKGMGFLLVAMLAGLAAVVLGTRWLQ----------AKSAGDGNRIAVAAVELQLGSR 50 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 + P + V +P ++ G D+ + + G + I G+P+ +L G Sbjct: 51 IAPEAIRLVEWPSGSIPAGAFHDLAKLD------GRVAITGIQPGEPVLESRLAPEGTKG 104 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRSLSERKPTVTVVLSN 173 GLS+++P+GKRA T+ ++ V G P ++VD+++ S + +VL Sbjct: 105 GLSAVVPEGKRAITVRVNDVIGVAGFTLPGNYVDIMVNTENTGANRNSADQMISKIVLER 164 Query: 174 IRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 I V+A+ + DE + V + TLE+TP QA+ L A+SV LSLVLR+ D N + + Sbjct: 165 ILVLAVAQEANRDETKPKVVNAVTLEVTPEQAERLDLARSVGNLSLVLRNQIDSNTTDTA 224 Query: 233 DSDVWDVQEE 242 + Sbjct: 225 GITKAMLLRT 234 >gi|227818614|ref|YP_002822585.1| CpaB2, Flp pilus assembly protein CpaB [Sinorhizobium fredii NGR234] gi|36958870|gb|AAQ87295.1| Pilus assembly protein, CpaB [Sinorhizobium fredii NGR234] gi|227337613|gb|ACP21832.1| CpaB2, Flp pilus assembly protein CpaB [Sinorhizobium fredii NGR234] Length = 263 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 15/257 (5%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + RL+ ++ + A +A+ T E + VL++ +LA G + Sbjct: 1 MIRLVILLFALASGGAASWLALGFA---DQPTVEAAEVQQSPSQEVLVAAQELARGTTLE 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L W A+ E + FI +P+A + L G+L + + G+PIR +KL RG G LS Sbjct: 58 EPHLRWQAW-EGEIPPVFISRSARPDAKESLKGLLAQSSFVAGEPIREDKLAQRGAGFLS 116 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVI 177 S+LP GKRA + ++ S GG I PNDHVDV+ S + K VLSNIRV+ Sbjct: 117 SMLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHTVARPDSSGKDGKVVSRAVLSNIRVL 176 Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+D I D +VG TATLE P Q + AA++ +SL LR++AD + +++ Sbjct: 177 AVDQTISEGADGTSVVGKTATLEADPGQIDIIAAAEASGTVSLALRAVADNLEAPVVETE 236 Query: 236 VWDVQEEGKEIQIIKAG 252 ++I+ G Sbjct: 237 GSRPG----VVRIVSGG 249 >gi|85707703|ref|ZP_01038769.1| pilus assembly protein CpaB [Erythrobacter sp. NAP1] gi|85689237|gb|EAQ29240.1| pilus assembly protein CpaB [Erythrobacter sp. NAP1] Length = 365 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 75/265 (28%), Positives = 130/265 (49%), Gaps = 19/265 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +L+ ++ + V A+ + +A + + T + E VL++ L G + Sbjct: 1 MDRKKLVLLLGALVVAIGSAFLARSMFAGDPAPTAQAAPEPTGP--KVLVANRALPAGTI 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 +T + + + +PEE V D + + + M +L G +VR P+ G+P+ LV G+ G Sbjct: 59 ITADAMGYQMWPEELVQDAYFIEGE--SDMSQLLGTVVRFPVTAGEPVTQGSLVSPGDRG 116 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176 L++ L G RA T+ +S + V G + P D VDVV+ +++S VL N+RV Sbjct: 117 FLAAALGPGMRAVTVPVSAKTGVAGFVFPGDRVDVVLTQTVSGEGRPLNAAETVLRNLRV 176 Query: 177 IAIDHNIDSDERVLVG------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS- 229 +A D + T TLE+TP A+ + AQ++ +L+LVLRSIAD Sbjct: 177 LATDQTTEQVTNDEGKTVVRAFRTVTLEVTPQIAEKVAVAQTIGQLTLVLRSIADNQAEL 236 Query: 230 ----SSEDSDVWDVQEEGKEIQIIK 250 +S D ++ D +E +I++ Sbjct: 237 ERAIASGDLEIPDDATPEEEERILR 261 >gi|54302291|ref|YP_132284.1| Flp pilus assembly protein [Photobacterium profundum SS9] gi|46915713|emb|CAG22484.1| hypothetical Flp pilus assembly protein [Photobacterium profundum SS9] Length = 264 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 65/267 (24%), Positives = 114/267 (42%), Gaps = 32/267 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ-TEEVITENPAKFINV------------ 48 K + + +S + L A I+A + + P + V Sbjct: 3 KGKIFLTLFISIMMGLGALILANNWLQSKQANLNAQTKPSEPVTQVEVQIKEVMKEEPKV 62 Query: 49 --LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 ++++ + +G + L +P + V +++ G+L R I +GD Sbjct: 63 PRVMAQQRIPLGTKIEAKHLSIEYYPTDLV------KSKGYETPEQVVGMLARNEIFEGD 116 Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 +R E+LV G G L++L+ RA T+ ++ V G + P D VDV+ ++ S Sbjct: 117 LLRKERLVTPGEGTTLAALISPNMRAVTIRVNDVIGVAGFLLPGDFVDVIYIKEKSNNAI 176 Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 VL I+++A+D +D+ + ++ TLELTP QA++LV A+S +L L LR+ Sbjct: 177 ---TVLKKIKILAVDQTARTDDSKPVIVRAVTLELTPKQAESLVTAKSKGELQLSLRNPN 233 Query: 225 DLNPSSSEDSDVWDVQEEGKEIQIIKA 251 D+ D I IIK Sbjct: 234 DIEQKKRVYRRTTD------AITIIKG 254 >gi|224824212|ref|ZP_03697320.1| Flp pilus assembly protein CpaB [Lutiella nitroferrum 2002] gi|224603631|gb|EEG09806.1| Flp pilus assembly protein CpaB [Lutiella nitroferrum 2002] Length = 282 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 118/246 (47%), Gaps = 24/246 (9%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 IVVS + LVA ++A + ++ + V+++ D+ +G ++P +L Sbjct: 1 MIVVSVIIGLVAVVMASQWINKQTNVAAQ----------KVVVASMDIDLGSKLSPEMLR 50 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLP 126 V +P ++ +G I D + LDG +++ + +G+ I KL GGLS+++ Sbjct: 51 SVDWPSGSIPEGAILDP------KALDGRVLKTSVNRGEAILESKLAPVGTKGGLSAVVM 104 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS------ERKPTVTVVLSNIRVIAID 180 +GKRA T+ ++ V G P ++VD+++ + +VL +I V+A+ Sbjct: 105 EGKRAMTVRVNDVVGVAGFALPGNYVDILVNTTDDAKKGQNNDASISKIVLEHILVLAVA 164 Query: 181 HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D P + + Sbjct: 165 QEASRDDTKPKVVNAVTLEVTPEQAEKLDLARSVGTLSLVLRNQVDPKPVQTAGITKQVL 224 Query: 240 QEEGKE 245 E Sbjct: 225 LRGHDE 230 >gi|134299960|ref|YP_001113456.1| SAF domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052660|gb|ABO50631.1| SAF domain protein [Desulfotomaculum reducens MI-1] Length = 234 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 109/236 (46%), Gaps = 19/236 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + +++ +F LVA + + + F V++ L + Sbjct: 1 MRNK--LIFILAIIFGLVAAFGVYQYLGHLKQSY-----RSSGNFKQVVVPTQPLGPKTL 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGN 118 +T +++ P E + G A Q++ G + R + +PI L ++ + Sbjct: 54 ITDKMVKVKDIPVELIQPG------TAIAPQDVVGKITRSELYPEEPIMLNRIYKDSNTD 107 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-VTVVLSNIRVI 177 G L+ L+P+G+RA T+ + S V G+++P DHVD+++ + + T++L NI+V+ Sbjct: 108 GDLALLIPEGQRALTVAVDDVSGVAGLLQPGDHVDIIVTFDYEGEQTSLSTLLLQNIQVL 167 Query: 178 AIDHNIDS---DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 A+ ++D+ E+ T TL + P QA L A + L+LRS D ++ Sbjct: 168 AVGQSLDNTPKAEKKTSSQTVTLSVQPGQATPLTLATERGSIRLMLRSPKDAGTAN 223 >gi|145219385|ref|YP_001130094.1| SAF domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145205549|gb|ABP36592.1| SAF domain protein [Chlorobium phaeovibrioides DSM 265] Length = 262 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 115/239 (48%), Gaps = 19/239 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + + + ++ + +A A R V+ V+I + +G +T Sbjct: 1 MKKPIIAAIALILGAMAAFTAARWVNISRHTGP-----------KVVIVAQPIELGKAIT 49 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121 ++ V +P ++ G + E+ G + RV ++ G+P+ KL +G GGL Sbjct: 50 TEQIKTVNWPGADIPQGAVSK------ATEVVGRIARVSMMPGEPVLPGKLAPKGATGGL 103 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 +S++ GKRA T+ ++ AV G P VD+++ + R+P VLS ++V+A+ Sbjct: 104 ASIISDGKRAITVKVNEVIAVAGFALPGSFVDILVSGKDANRQPFSRTVLSRVKVLAVAQ 163 Query: 182 NIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 ++ ++ V + TLELTP +++ L A+S+ LSLVLR+ D +S + D+ Sbjct: 164 ETTAEPDKPKVVNAVTLELTPHESEKLDLARSIGALSLVLRNELDTGEVNSAGVRLSDL 222 >gi|260426594|ref|ZP_05780573.1| Flp pilus assembly protein CpaB [Citreicella sp. SE45] gi|260421086|gb|EEX14337.1| Flp pilus assembly protein CpaB [Citreicella sp. SE45] Length = 286 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 110/251 (43%), Gaps = 11/251 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58 M+L + ++ A A +A + + Q E + ++ + G Sbjct: 1 MRLVFGLVLIAGLGLAGFAVHLAQKQFGAYQNALQLERAKAVKAVPTRMIYVTTQAVPTG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 V+ ++ +P+E + +G D+ + P A E +V + K + + ++ + G Sbjct: 61 EVLRKEYVKLAPWPQEILPEGVFDETNPPFADGE-APRVVTRAMDKFEAVLTTRISEPGG 119 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVL 171 + GL++ L +G+RA + + ++S V G ++P D VDV + R ++ Sbjct: 120 DAGLTTRLERGQRAFAIKVDVTSGVSGFLRPGDRVDVYWTGKMPGTDANLPRGEVTKLIE 179 Query: 172 SNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + +++IAID + + + T T+ ++P Q L AQS +LSL L + D + + Sbjct: 180 TAVKLIAIDQTAEVENSDATIARTVTVAVSPQQVAGLAQAQSTGRLSLSLLAANDDSIAE 239 Query: 231 SEDSDVWDVQE 241 + + D + Sbjct: 240 AIEVDQRTLLG 250 >gi|116626780|ref|YP_828936.1| SAF domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116229942|gb|ABJ88651.1| SAF domain [Candidatus Solibacter usitatus Ellin6076] Length = 309 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 116/237 (48%), Gaps = 21/237 (8%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + + + V AL+ + K + V+++ D+A+G ++ Sbjct: 3 RQKKFLLFGAAWVSALLLTWFYY----------ANAVAPKQEKTLRVVVASRDMAIGTLL 52 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GG 120 + L+ V +PE+++ G + +Q + +V VP+ +P+ KL D G Sbjct: 53 KKSDLKVVNYPEKDIPKGAV------FTLQGAENRVVMVPMNTNEPVLQGKLSDTTTVEG 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 ++S + KG RA ++ ++ + V G+I+P HVDV+ R S + T + +L N+RVI+ Sbjct: 107 VASTIEKGYRAVSVQVTDVTGVAGLIQPGSHVDVLFTRPGSMAEATTSTILQNVRVISTG 166 Query: 181 HNIDSDE----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 +I + + R T TL LTP +A+ L A++ ++ L LR+ DLN +S + Sbjct: 167 RSITAGQVVDPRAPKSPTVTLVLTPDEAQKLELAKNQGRIGLSLRNPLDLNRDASTE 223 >gi|78060315|ref|YP_366890.1| Flp pilus assembly CpaB [Burkholderia sp. 383] gi|77964865|gb|ABB06246.1| Flp pilus assembly CpaB [Burkholderia sp. 383] Length = 279 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 118/246 (47%), Gaps = 22/246 (8%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 +M +VV+ V L A + A + + + + V ++ DL +G + Sbjct: 3 NSRAVMMLVVAMVAGLAAVVFASHWL----------VQTSTSSVTPVAVATTDLNLGEPL 52 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120 PN + V++P +V G D + L+G +VR + +G+P+ KL GG Sbjct: 53 GPNQIHMVSWPSGSVPTGAFTD------TKGLEGRVVRTSLSRGEPVIESKLAPVGTKGG 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRV 176 LS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I V Sbjct: 107 LSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILV 166 Query: 177 IAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 +A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ + Sbjct: 167 LAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLNTDGAT 226 Query: 236 VWDVQE 241 + Sbjct: 227 KLTLLG 232 >gi|197118221|ref|YP_002138648.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem] gi|197087581|gb|ACH38852.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem] Length = 289 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 112/246 (45%), Gaps = 22/246 (8%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 +++ + +A I+A + + P + + + + DL +G + ++ Sbjct: 12 IIALLLGGLATIMANNYLKKQ--------ADKPYEGVPIASAAVDLPLGSKLNATQVKLA 63 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG--LSSLLPK 127 +P++ + G D + L G +V P+ G+ I KL+ + G ++ ++P Sbjct: 64 TWPKDALPAGGYQD------YKPLVGRIVVRPLSAGEVITENKLMPLNSSGGIMTYMVPD 117 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRVIAIDHNI 183 G RA T+ ++ + V G I PN VDV++ S +ER ++L N+ V+A Sbjct: 118 GHRAVTVSVNEVAGVAGFITPNSRVDVLLTIPRPGSTNERDNISKIILQNVPVLATGQVT 177 Query: 184 D--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 + + V T TL++TP++A+ L+ L L+LR++ D+ ++ + V Sbjct: 178 EQKEGGKPGVVPTVTLDVTPIEAEKLIVGTKKGSLQLLLRNVIDVASVDTKGATVSRALG 237 Query: 242 EGKEIQ 247 + +Q Sbjct: 238 GTETLQ 243 >gi|209515950|ref|ZP_03264811.1| Flp pilus assembly protein CpaB [Burkholderia sp. H160] gi|209503608|gb|EEA03603.1| Flp pilus assembly protein CpaB [Burkholderia sp. H160] Length = 375 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 107/249 (42%), Gaps = 20/249 (8%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + R++ IV+ + A V II L V + P V ++ DL GM++ Sbjct: 1 MPRILKIVILVILASVGAIIFRALF----VAASQPGQARPPAMDRVRVAAADLPEGMLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNA-MQELDGVLVRVPILKGDPIRLEKLVDRG-NGG 120 + L W P + V G + +A +L G ++R + G + ++ G Sbjct: 57 ESDLAWKEVPHKQVLQGALVKGDAESAEATDLKGDVLRHAVTAGTMLGTADVIPPNAPGF 116 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVVL 171 L++ L G RA ++ I S G+I+P D+VDV++ + L R V+ Sbjct: 117 LAAALKPGMRAISVAIDDVSGNAGLIQPGDYVDVLLTQQLDGPVHAPQNTARSVESETVV 176 Query: 172 SNIRVIAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 + +RV+A+ D+ + T T E+TP A+ + A + LSL LRS A Sbjct: 177 NRVRVLAVGSIFQRPKADAADANTRARTVTFEVTPHTAQVIAVATHLGSLSLALRSFATS 236 Query: 227 NPSSSEDSD 235 + + ++ Sbjct: 237 DRNPPVIAN 245 >gi|159043679|ref|YP_001532473.1| SAF domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157911439|gb|ABV92872.1| SAF domain protein [Dinoroseobacter shibae DFL 12] Length = 280 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 5/231 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58 M+L + +++ A A ++A + ++ + V + + G Sbjct: 1 MRLVFGLVLLLGVGLAGFAVMMAKDRFDQYQTVVAKQQQKLAAAVDVVEVYVMDTPIRYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117 + + + V +P + + +G E + +P+ K+ + Sbjct: 61 EKIGKDDVRKVRWPADALPEGAFQTEEGLFPDAEGRLRTATRAMEANEPVLAVKVTEPGQ 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + G+SS L KG RA + ++++S V G ++P D VDV S + ++ S++++I Sbjct: 121 DAGVSSRLGKGMRAFAISVTVTSGVSGFLRPGDRVDVYWSGSSKGQD-VTKLIQSSMQII 179 Query: 178 AIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 ID N D D + T T+E TP Q L AQ LSL L AD Sbjct: 180 GIDQNADMDRTAPTIARTVTVEATPQQVAGLAQAQRTGSLSLSLVGAADDA 230 >gi|89899602|ref|YP_522073.1| Flp pilus assembly CpaB [Rhodoferax ferrireducens T118] gi|89344339|gb|ABD68542.1| Flp pilus assembly CpaB [Rhodoferax ferrireducens T118] Length = 286 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 58/250 (23%), Positives = 109/250 (43%), Gaps = 25/250 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + ++ + L A +A R + + + ++ D+ +G Sbjct: 1 MRSRGILMLFIAVIAGLAAVFLATRWMQG-----------QGGEGGRIAVANTDIELGGR 49 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 ++P ++ +P + G + + L+G +V V + +G+P+ +L G Sbjct: 50 ISPEMIRMADWPLGSTPTGAYKEAAK------LEGRVVLVSMQRGEPLIEARLAPIGTKG 103 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVLSN 173 GLS+++P+GKRA T+ ++ V G P VDV++ + +VL Sbjct: 104 GLSAVVPQGKRAMTVRVNDVVGVAGFALPGTFVDVMVNTQDEGGQRNDRDRSVSKIVLER 163 Query: 174 IRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 I V+A+ D D + V + TLE+TP A+ L A+SV LSLVLR+ D ++ Sbjct: 164 ILVLAVAQEADRDSTKPRVVNAVTLEVTPRDAEMLDLARSVGTLSLVLRNQTDPKGVAAT 223 Query: 233 DSDVWDVQEE 242 Sbjct: 224 GGATKAELLG 233 >gi|46580523|ref|YP_011331.1| hypothetical protein DVU2118 [Desulfovibrio vulgaris str. Hildenborough] gi|46449942|gb|AAS96591.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234262|gb|ADP87116.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris RCH1] Length = 272 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 18/250 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ T ++ ++ + V ALVAG++ R V + V + + ++++ D+ G Sbjct: 1 MRRTAVIQVIAALVLALVAGVLVFRFVQVNRVAQQ----TQQPPGVVLVVAAVDMEKGAK 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118 + + L+ F + G D + L G ++ P+ G+ I +L+ + Sbjct: 57 IRADQLKTSTFLSASAPPGGFTD------AKSLVGRVLATPVTTGEVITETRLLPADATS 110 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIR 175 GG+S+++ G RA + + + G I+P + VD+++ R+ V+L+ I+ Sbjct: 111 GGVSTMIAPGMRAVAVKGNKVMGLAGFIRPGNRVDIMVTIDDETREKAKARTKVILAGIK 170 Query: 176 VIAIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 V+A + + S TLE+TP QA+ L A S +L LR+ AD P + Sbjct: 171 VLATGTELRQEGDDTATSPVEVYTLEVTPEQAELLSLAASRGELHFALRNPADDLPVRTA 230 Query: 233 DSDVWDVQEE 242 +DV + Sbjct: 231 GTDVPATLRQ 240 >gi|186474102|ref|YP_001861444.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815] gi|184196434|gb|ACC74398.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815] Length = 282 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 67/254 (26%), Positives = 123/254 (48%), Gaps = 30/254 (11%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK R L+ ++V+ L A + A R + + + V+I+ D+++G Sbjct: 1 MKNARALVMLLVATAAGLAAVVFAARWM----------VQQTSTSTTKVVIASADMSLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 V+P +L+ +P +V G +DV ++L+G +++ + +G+P+ KL G Sbjct: 51 RVSPEMLKVSDWPAGSVPPGTFNDV------KKLEGRVLKASLSRGEPVLEAKLSPVGTL 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----------RKPTV 167 GGLS+++ +GKRA T+ ++ V G P ++VD+++ + Sbjct: 105 GGLSAVINEGKRAITVRVNDVIGVAGFALPGNYVDILVNTEKENASREGAGASGRDQNIS 164 Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +VL I V+A+ DE + V TLE+TP QA+ + A+S+ LSLVLR+ D Sbjct: 165 KIVLEKILVLAVAQEAGRDETKPKVVDAVTLEVTPEQAEKIDLARSIGSLSLVLRNQVDP 224 Query: 227 NPSSSEDSDVWDVQ 240 +S+ + + Sbjct: 225 QDTSTAGATKATLL 238 >gi|78357402|ref|YP_388851.1| putative pilus assembly protein CpaB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219807|gb|ABB39156.1| putative pilus assembly protein CpaB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 272 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 106/248 (42%), Gaps = 18/248 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + L+ I V+ V AL AG + R++ + + ++ D+ G Sbjct: 1 MKKSSLIQIAVALVLALGAGALVFRMMQ----APARTAQPPKVASVMLAVAAADMTKGTR 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGN 118 + + F + G ++ EL G ++ + G+PI +LV+ Sbjct: 57 IRAEQITMAEFLLQTAPAGAF------SSADELTGRVLASAVTAGEPITPARLVEDTVRY 110 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---ERKPTVTVVLSNIR 175 GG+S+++ GKRA + + + G I+P +HVDV++ + + K VL NIR Sbjct: 111 GGVSTMISPGKRAVAVKGNNVLGMAGFIRPGNHVDVLVTIDDNRRPQDKAVTKTVLENIR 170 Query: 176 VIAIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 V+A ++ S TLE+ P + + L A S ++ LR+ AD + + Sbjct: 171 VLATGTELEQQGDDTATSPVDIYTLEMLPREVEVLSLAASRGEVHFSLRNPADTDSVKTA 230 Query: 233 DSDVWDVQ 240 +DV Sbjct: 231 GTDVPHAL 238 >gi|254418623|ref|ZP_05032347.1| Flp pilus assembly protein CpaB [Brevundimonas sp. BAL3] gi|196184800|gb|EDX79776.1| Flp pilus assembly protein CpaB [Brevundimonas sp. BAL3] Length = 305 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 77/298 (25%), Positives = 122/298 (40%), Gaps = 45/298 (15%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R+ I ++ V AL ++ + + +L++ +L G Sbjct: 1 MKPARIAVICIAAVSALGLALVVRAMGNGEPAAPAAAAPVETRPMAKILVAAKNLEPGKR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQ----------------------------- 91 + L W +P + V FI D P + Sbjct: 61 LAEADLAWKDWPVDEVNPAFITDGSTPIPAKPAPEGAGEKAGAAVERVAEAAGQMAGPGA 120 Query: 92 --ELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148 + G +VR PIL G+PI K+V +G L++ L G RA + +++ SA GG I P Sbjct: 121 KSDYIGSVVREPILAGEPIVGRKIVRAGDSGYLAAYLEPGMRAMAIAVTVESAAGGFILP 180 Query: 149 NDHVDVVMVRSL-----------SERKPTVTVVLSNIRVIAIDHN--IDSDERVLVGSTA 195 D VDVV+ + K + V+ N++V+AID + D + +VG+TA Sbjct: 181 GDRVDVVLTVQNEGGGSAVEGGGATAKYSSATVMQNVKVLAIDQSTRAGDDAQAVVGATA 240 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253 TLE+ P A L A+S +LSL LRS AD S V + +++ + G Sbjct: 241 TLEVRPQDAVLLAQAKSEGELSLSLRSYADTAGPSGATRAPRAVASASRSVRVYRGGE 298 >gi|84501677|ref|ZP_00999849.1| CpaB family protein [Oceanicola batsensis HTCC2597] gi|84390298|gb|EAQ02857.1| CpaB family protein [Oceanicola batsensis HTCC2597] Length = 265 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 7/231 (3%) Query: 25 RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84 L V V + L G ++ + + +P + +G + Sbjct: 5 FLAQQAAAAEAAVAEPVTVPTKMVYVVNRQLKYGEQLSRADVRQIEWPAAAIPEGVFHEE 64 Query: 85 HQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVG 143 + + V + + + + K+ + GL+S L KG RA + + ++S V Sbjct: 65 NTLFPENDPRPRFVLRTMERNEAVLTGKVTAPGEDAGLTSRLEKGMRAFAIKVDVASGVS 124 Query: 144 GMIKPNDHVDVVMVR-----SLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATL 197 G ++P D VD+ + ++ + I++IA+D + D ++ T T+ Sbjct: 125 GFLRPGDKVDIYWTGRVSGMDRNASGEVTKLIETGIQLIAVDQMANGDHSEAMIARTVTV 184 Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQI 248 + P Q AL AQS +L+L L D + + + D + + QI Sbjct: 185 AVNPQQVGALAQAQSTGRLALSLVGNLDDTVAEAIEVDQRSLLGLSEAPQI 235 >gi|115361032|ref|YP_778169.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD] gi|115286360|gb|ABI91835.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD] Length = 281 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 23/248 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R LM ++++ V L A + A R + + + DL +G Sbjct: 1 MKNSRALMMLIIAMVAGLAAVVFASRWLMHTSSSSVTSVAVATT----------DLNLGE 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 + PN + V++P +V G D +EL+G +VR + +G+P+ KL Sbjct: 51 PLGPNQIHMVSWPSGSVPTGAFAD------TKELEGRVVRTSLARGEPVIESKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174 GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTDG 224 Query: 234 SDVWDVQE 241 + + Sbjct: 225 ATKLTLLG 232 >gi|262171231|ref|ZP_06038909.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451] gi|261892307|gb|EEY38293.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451] Length = 250 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 16/236 (6%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A A + + + V + I+ D+ G V+ L + Sbjct: 19 AAVFFAKQWMDKQMTPQQAVEVVEREPVV---IAAIDIPAGSVIEQQHLTTKLLEKSW-- 73 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDI 136 ++ Q + + L G +V PI +G+ I +++L G G L+SL+P+ RA T+ + Sbjct: 74 ----RNISQFSDPKVLVGQIVTGPIFQGEIIYVQRLTVPGEGSTLASLIPEKMRAITIRV 129 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195 + V G + P + VDV+ S S+ VL +I+V+A+D S E + ++ Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAV 189 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 TLE+TP QA+ L++AQS ++ L LR+ + + + IIK Sbjct: 190 TLEVTPEQAEKLLSAQSKGEIQLTLRNPHEPEEKVAVTRRYVA-----PSVTIIKG 240 >gi|120602160|ref|YP_966560.1| SAF domain-containing protein [Desulfovibrio vulgaris DP4] gi|120562389|gb|ABM28133.1| SAF domain [Desulfovibrio vulgaris DP4] Length = 272 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 113/250 (45%), Gaps = 18/250 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ T ++ ++ + V ALVAGI+ R V + V + + +++S D+ G Sbjct: 1 MRRTAVIQVIAALVLALVAGILVFRFVQVNRVAQQ----TQQPPGVVLVVSAVDMEKGAK 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118 + + L+ F + G D + L G ++ P+ G+ I +L+ + Sbjct: 57 IRADQLKTSTFLSASAPPGGFTD------AKSLVGRVLATPVTTGEVITETRLLPADATS 110 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIR 175 GG+S+++ G RA + + + G I+P + VD+++ R+ V+L+ I+ Sbjct: 111 GGVSTMIAPGMRAVAVKGNKVMGLAGFIRPGNRVDIMVTIDDETREKAKARTKVILAGIK 170 Query: 176 VIAIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 V+A + + S TLE+TP QA+ L A S +L LR+ AD P + Sbjct: 171 VLATGTELRQEGDDTATSPVEVYTLEVTPEQAELLSLAASRGELHFALRNPADDLPVRTA 230 Query: 233 DSDVWDVQEE 242 +DV + Sbjct: 231 GTDVPATLRQ 240 >gi|107028249|ref|YP_625344.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054] gi|116687160|ref|YP_840407.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424] gi|105897413|gb|ABF80371.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054] gi|116652875|gb|ABK13514.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424] Length = 279 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 22/249 (8%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 LM +VV+ V L A + A R + + + + +V ++ DL +G + Sbjct: 3 NSRALMMLVVAMVAGLAAVVFASRWL----------VQTSTSSVTSVAVATTDLNLGEPL 52 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120 PN + V++P +V G D + L+G +VR + +G+P+ KL GG Sbjct: 53 GPNQIHMVSWPAGSVPTGAFTD------TKTLEGRVVRTSLARGEPVIESKLAPVGTKGG 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRV 176 LS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I V Sbjct: 107 LSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILV 166 Query: 177 IAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 +A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D ++ + Sbjct: 167 LAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTGGAT 226 Query: 236 VWDVQEEGK 244 + + Sbjct: 227 KLTLLGKEP 235 >gi|254293213|ref|YP_003059236.1| Flp pilus assembly protein CpaB [Hirschia baltica ATCC 49814] gi|254041744|gb|ACT58539.1| Flp pilus assembly protein CpaB [Hirschia baltica ATCC 49814] Length = 321 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 16/242 (6%) Query: 30 HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNA 89 EV + VL++ DL VG V L W ++PEE+ F + P+A Sbjct: 38 QTATLSEVGQAEQIPVLKVLVATTDLKVGQFVKEGQLSWQSWPEESNTSSFFTEEMSPDA 97 Query: 90 MQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKP 148 ++ + G +VR ++ G+P+ EK+V G G ++++L G RA ++IS +A GG I P Sbjct: 98 IEAMQGAVVRTNMMAGEPLTSEKVVHPGEAGFMAAVLTPGMRAVAVEISAETAAGGFIFP 157 Query: 149 NDHVDVVMVRSLS-------ERKPTVTVVLSNIRVIAID----HNIDSDERVLVGSTATL 197 NDHVDV++ + + + +L+N+RV+AID + +VG ATL Sbjct: 158 NDHVDVLLTFEVDVERPTGITEETAIDTILNNVRVLAIDGYYRPVEEEAGDAVVGHRATL 217 Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD----VWDVQEEGKEIQIIKAGV 253 EL+ A L+AAQ LSLVLRSI++L+ S ++ +++ + GV Sbjct: 218 ELSKQDAMVLMAAQERGDLSLVLRSISELSGPSGATANGLAMASRRGAGSDGVRVFQKGV 277 Query: 254 IV 255 V Sbjct: 278 SV 279 >gi|170701162|ref|ZP_02892135.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10] gi|170133943|gb|EDT02298.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10] Length = 281 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 23/248 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R LM ++++ V L A + A R + + + DL +G Sbjct: 1 MKNSRALMMLIIAMVAGLAAVVFASRWLMNTSSSSVTSVAVATT----------DLNLGE 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 + PN + V++P +V G D +EL+G +VR + +G+P+ KL Sbjct: 51 PLGPNQIHMVSWPSGSVPTGAFAD------TKELEGRVVRTSLARGEPVIESKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174 GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTDG 224 Query: 234 SDVWDVQE 241 + + Sbjct: 225 ATKLTLLG 232 >gi|258621446|ref|ZP_05716480.1| Pilus assembly protein [Vibrio mimicus VM573] gi|262165920|ref|ZP_06033657.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223] gi|258586834|gb|EEW11549.1| Pilus assembly protein [Vibrio mimicus VM573] gi|262025636|gb|EEY44304.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223] Length = 250 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 16/236 (6%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A A + + + V + I+ D+ G V+ L + Sbjct: 19 AAVFFAKQWMDKQMTPQQAVEVVEREPVV---IAAIDIPAGSVIEQQHLTTKLLEKSW-- 73 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDI 136 ++ Q + + L G +V PI +G+ I +++L G G L+SL+P+ RA T+ + Sbjct: 74 ----RNISQFSDTKVLVGQIVTGPIFQGEIIYVQRLTVPGEGSTLASLIPEKMRAITIRV 129 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195 + V G + P + VDV+ S S+ VL +I+V+A+D S E + ++ Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAV 189 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 TLE+TP QA+ L++AQS ++ L LR+ + + + IIK Sbjct: 190 TLEVTPEQAEKLLSAQSKGEIQLTLRNPHEPEEKVAVTRRYVA-----PSVTIIKG 240 >gi|323702114|ref|ZP_08113782.1| Flp pilus assembly protein CpaB [Desulfotomaculum nigrificans DSM 574] gi|323532996|gb|EGB22867.1| Flp pilus assembly protein CpaB [Desulfotomaculum nigrificans DSM 574] Length = 234 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 19/236 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++++ +F L A + + + F V++ K + + Sbjct: 1 MRNK--LILILAILFGLAAAFGVFKYLDGLKKSY-----RSSGNFKQVVVPKQTIGPNTM 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRGN 118 +T +++ P E + G D +++ G + R + +PI L +L Sbjct: 54 LTAQMVKVKDIPVEMIQPGTAMD------TKDVVGKVTRSDLYPEEPILLSRLHQDKDST 107 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVI 177 G L+ +P G+RA T+++ S V GM+KP DHVD+++ E+ +++L NI+V+ Sbjct: 108 GELALAIPTGQRALTVEVDAVSGVAGMLKPGDHVDILVTFDYEVEKTTLTSLLLQNIKVL 167 Query: 178 AIDHN---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 A+ + ++ + T TL +TP QA L K+ L+LRS D ++ Sbjct: 168 AVGQSLVSAQKGDQKVNTQTVTLAVTPEQAPPLTLGSERGKIRLMLRSPKDEGTAN 223 >gi|294139869|ref|YP_003555847.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12] gi|293326338|dbj|BAJ01069.1| Flp pilus assembly protein CpaB, putative [Shewanella violacea DSS12] Length = 288 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 57/269 (21%), Positives = 110/269 (40%), Gaps = 27/269 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + RLM V A + G+ +++ + +L++K + G Sbjct: 1 MTVKRLMYFSVFISLAGLIGLYL-----SISAPQKQINIKTENVRHEILVAKQLIKSGQR 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + ++ EW A E+ + + + + + ++ G + L + GG Sbjct: 56 FSASLFEWQALNEDQLTNLVDYIDRDKFDILKFNDSVLVSSFTAGHIMSLSDFLKPEEGG 115 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVV 170 LS L G RA ++ + +A G++ P D VDV++ R + V + Sbjct: 116 FLSVSLRPGYRAVSVPVDQVTANSGLVGPGDFVDVLLLASQEQELRTRGNDTQSLYVKTI 175 Query: 171 LSNIRVIAIDHNIDSDERVLV----------GSTATLELTPMQAKALVAAQSVAKLSLVL 220 N+RV+A +H + ++ + S TLE+ P QA ++ A + L+LVL Sbjct: 176 ARNVRVLAFNHAVKVEQYIAAQKEYKGFIPDDSAVTLEVLPKQANRIILANQLGILTLVL 235 Query: 221 RSIAD--LNPSSSEDSDVWDVQEEGKEIQ 247 RS D +S + ++ D+ + K +Q Sbjct: 236 RSNNDSVDEANSQDQINIADIFPDIKRVQ 264 >gi|167584956|ref|ZP_02377344.1| Flp pilus assembly CpaB [Burkholderia ubonensis Bu] Length = 280 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 22/247 (8%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + ++++ V L A A R + V ++ DL +G + Sbjct: 3 NTRAITMLIIAMVAGLAAVAFASRWLVQTSTSAV----------TQVAVATTDLNLGEPI 52 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGG 120 P + +++P +V G D + L+G +VR + +G+P+ KL GG Sbjct: 53 GPAQIRTISWPTGSVPPGAFTD------TKSLEGRVVRTSLARGEPVLEAKLAPLGTKGG 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRV 176 LS+++ G RA T+ ++ V G P ++VDV++ ++ +VL +I V Sbjct: 107 LSAVIGAGNRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPGKTDNQQSISKIVLEHILV 166 Query: 177 IAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 +A+ + D+ + V + TLE++P QA+ L A+SV LSLVLR+ D +++ + Sbjct: 167 LAVAQQVSRDDTQPKVVNAVTLEVSPEQAEKLDVARSVGTLSLVLRNQVDKQTLNTDGAT 226 Query: 236 VWDVQEE 242 + Sbjct: 227 KLTLLGR 233 >gi|187919323|ref|YP_001888354.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] gi|187717761|gb|ACD18984.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] Length = 269 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 118/248 (47%), Gaps = 25/248 (10%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 ++++ + L A + A R + ++++ V+++ D+ +G + P+ L+ Sbjct: 1 MLLIATLAGLTAVVFASRWM----------VSQSSNATTRVVVAAADINLGQRIGPDYLK 50 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126 +P +V G D+ + + G +++ +L+G+PI KL G GGLS+++ Sbjct: 51 LTDWPSNSVPPGSYSDIQKLD------GRVLKESLLRGEPILDAKLTPVGTLGGLSAVIG 104 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAI 179 +GKRA T+ ++ V G P ++VD+++ R P +VL I V+A+ Sbjct: 105 EGKRAITVRVNDVIGVAGFALPGNYVDIIVNTQKDGRDPGATRDQNISKIVLEKILVLAV 164 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 + DE + V TLE+ P QA+ + A+S+ LSLVLR+ D + + Sbjct: 165 AQEVGRDETKPKVVDAVTLEVLPEQAEKIDLARSIGTLSLVLRNQIDPKAIDTAGATKAS 224 Query: 239 VQEEGKEI 246 + + + Sbjct: 225 LLQTPVAV 232 >gi|170734869|ref|YP_001773983.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3] gi|169820907|gb|ACA95488.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3] Length = 279 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 22/249 (8%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 LM +VV+ V L A + A R + + + + +V ++ DL +G + Sbjct: 3 NSRALMMLVVAMVAGLAAVVFASRWL----------VQTSTSSVTSVAVASTDLNLGEPL 52 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120 PN + V++P +V G D + L+G +VR + +G+P+ KL GG Sbjct: 53 GPNQIHMVSWPAGSVPTGAFTD------TKALEGRVVRTSLARGEPVIESKLAPVGTKGG 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRV 176 LS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I V Sbjct: 107 LSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILV 166 Query: 177 IAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 +A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D ++ + Sbjct: 167 LAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTGGAT 226 Query: 236 VWDVQEEGK 244 + + Sbjct: 227 KLTLLGKEP 235 >gi|320155488|ref|YP_004187867.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O] gi|319930800|gb|ADV85664.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O] Length = 248 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 18/236 (7%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A A + + ++V + I+ ++ G V+ P L + Sbjct: 19 AAVFFAKQWMDKQLTPQQDVEVVEREPVV---IAAIEIPAGSVIEPQHLTTKLLEKSW-- 73 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDI 136 ++ Q +EL G +V I G+ I ++L G G L++L+P+ KRA T+ + Sbjct: 74 ----RELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRV 129 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195 + V G + P + VDV+ S S+ VL +I+V+A+D + E + ++ Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTISYSKGSAVTKTVLKDIKVLAVDQTARTKENKPIIVRAV 189 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 TLE+TP QA+ L++A+S ++ L LR+ + + + + IIK Sbjct: 190 TLEVTPDQAEKLLSAKSKGEIQLTLRNPHEPE-------EKVVRRYVAPSVTIIKG 238 >gi|254512153|ref|ZP_05124220.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium KLH11] gi|221535864|gb|EEE38852.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium KLH11] Length = 290 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 104/259 (40%), Gaps = 14/259 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP----------AKFINVLI 50 M+ + +++ A A +A ++ + + + ++VL+ Sbjct: 1 MRSVFGLVLIIGVALAGGAVYMAREYITDNQAKLAQERKLREEALANAKAGLVPTVDVLV 60 Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 S L G +T + V +PE + +G ++ + V + K + I Sbjct: 61 SNRSLKYGEQLTQEDIRVVQWPENAIPEGTFVEIAALFPDTRDNERFVLRAMEKDEAIMA 120 Query: 111 EKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTV 167 K+ G GL S LPKG RA + + ++S V G ++P D VDV R Sbjct: 121 VKVTAPGETAGLRSQLPKGMRAFAISVDVASGVSGFLRPGDTVDVYWTGAVRSEGRGEIT 180 Query: 168 TVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +VL+NI ++A+D D + T T+ TP Q AL AQ+ ++SL L D Sbjct: 181 RLVLTNIELVAVDQTAGLDVTGTTIARTVTVAATPQQIAALAQAQNTGRMSLALVGAQDD 240 Query: 227 NPSSSEDSDVWDVQEEGKE 245 + + D + ++ Sbjct: 241 KVAEVVEVDQRALLGIEEQ 259 >gi|172065272|ref|YP_001815984.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] gi|171997514|gb|ACB68431.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] Length = 281 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 23/248 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R +M ++++ V L A + A R + + + DL +G Sbjct: 1 MKNSRAVMMLIIAMVAGLAAVVFASRWLMNTSSSSVTSVAVATT----------DLNLGE 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 + PN + V++P +V G D +EL+G +VR + +G+P+ KL Sbjct: 51 PLGPNQIHMVSWPSGSVPTGAFAD------TKELEGRVVRTSLARGEPVIESKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174 GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTDG 224 Query: 234 SDVWDVQE 241 + + Sbjct: 225 ATKLTLLG 232 >gi|37680845|ref|NP_935454.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016] gi|37199594|dbj|BAC95425.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016] Length = 248 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 18/236 (7%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A A + + ++V + I+ ++ G V+ P L + Sbjct: 19 AAVFFAKQWMDKQLTPQQDVEVVEREPVV---IAAIEIPAGSVIEPQHLTTKLLEKSW-- 73 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDI 136 ++ Q +EL G +V I G+ I ++L G G L++L+P+ KRA T+ + Sbjct: 74 ----RELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRV 129 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195 + V G + P + VDV+ S S+ + VL +I+V+A+D + E + ++ Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSASTKTVLKDIKVLAVDQTARTKENKPIIVRAV 189 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 TLE+TP QA+ L++A+S ++ L LR+ + + + + IIK Sbjct: 190 TLEVTPDQAEKLLSAKSKGEIQLTLRNPHEPE-------EKVVRRYVAPSVTIIKG 238 >gi|27365105|ref|NP_760633.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6] gi|27361251|gb|AAO10160.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6] Length = 248 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 18/236 (7%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A A + + ++V + I+ ++ G V+ P L + Sbjct: 19 AAVFFAKQWMDKQLTPQQDVEVVEREPVV---IAAIEIPAGSVIEPQHLTTKLLEKSW-- 73 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDI 136 ++ Q +EL G +V I G+ I ++L G G L++L+P+ KRA T+ + Sbjct: 74 ----RELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRV 129 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195 + V G + P + VDV+ S S+ VL +I+V+A+D + E + ++ Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSAVTKTVLKDIKVLAVDQTARTKENKPIIVRAV 189 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 TLE+TP QA+ L++A+S ++ L LR+ + + + + IIK Sbjct: 190 TLEVTPDQAEKLLSAKSKGEIQLTLRNPHEPE-------EKVVRRYVAPSVTIIKG 238 >gi|149200846|ref|ZP_01877821.1| Flp pilus assembly CpaB [Roseovarius sp. TM1035] gi|149145179|gb|EDM33205.1| Flp pilus assembly CpaB [Roseovarius sp. TM1035] Length = 289 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 106/264 (40%), Gaps = 13/264 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58 M+ + ++V A A +A + + Q E + +++ ++ L G Sbjct: 1 MRAVFGLVLIVGLGLAGFAVYMAKNYIDGYQRQLEAERQQRAPVIETVDIFVATRALQYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + + + AFP+ ++ +G + E + +PI K+ + G Sbjct: 61 EALDKDAVRLTAFPKTSLPEGVFKATEELFPKGETVARRALRRMEMNEPILAVKVTEPGA 120 Query: 119 G-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVT 168 G++S L +G RA + + ++S V G ++P D +D+ S+ Sbjct: 121 EVGITSQLERGMRAFAIKVDVTSGVSGFLRPGDTIDIYWTGSVGAGNMRTEGNSMGEVTK 180 Query: 169 VVLSNIRVIAIDHNIDSDERVLV-GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 ++ + +++IA+D D D V T T+ + P Q AL AQS +LSL L D Sbjct: 181 LIENGVKLIAVDQVADMDTSETVIARTVTVAVKPQQVAALAQAQSTGRLSLSLVGALDDT 240 Query: 228 PSSSEDSDVWDVQEEGKEIQIIKA 251 + + D + E I +A Sbjct: 241 VAEVIEVDQHRLLGITAEAVIEQA 264 >gi|193213116|ref|YP_001999069.1| Flp pilus assembly protein CpaB [Chlorobaculum parvum NCIB 8327] gi|193086593|gb|ACF11869.1| Flp pilus assembly protein CpaB [Chlorobaculum parvum NCIB 8327] Length = 263 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 118/239 (49%), Gaps = 18/239 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + + + I ++ V +A IA R+ + + V+I + G V+ Sbjct: 1 MKKPVIIAIALVLGAMAAYIAARMST----------VQTDGSEAKVVIVAMPIDAGKVIA 50 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121 P+ ++ V +P V ++ G + RV ++ G+P+ +KL +G GGL Sbjct: 51 PDQIKAVQWPSSAVPLNAFARTA------DVVGRVARVSMIAGEPVLPDKLALKGAKGGL 104 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 +S LP+GKRA T+ ++ AV G P +VD+++ R+ VLS ++V+A+D Sbjct: 105 ASTLPEGKRAITVKVNEVIAVAGFALPGSYVDILVNGKDDNRRSFSRTVLSRVKVLAVDQ 164 Query: 182 NIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 D ++ + + T+EL+P +A+ L A+++ LSLVLR+ D +SE + D+ Sbjct: 165 VTTGDPDKPKLVNAVTVELSPREAEKLDLARNIGNLSLVLRNELDTAEVNSEGVRLPDI 223 >gi|194335912|ref|YP_002017706.1| Flp pilus assembly protein CpaB [Pelodictyon phaeoclathratiforme BU-1] gi|194308389|gb|ACF43089.1| Flp pilus assembly protein CpaB [Pelodictyon phaeoclathratiforme BU-1] Length = 263 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 20/247 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + + ++ + +A +A R +S V++ + + G Sbjct: 1 MKPQQ-FVLAIALILGAMAAFLAARWMS-----------VAQTSMSRVVVVEQPIEAGKA 48 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + + + + +P V + + G + V ++ G+P+ KL G Sbjct: 49 IKAHQIRSIDWPGSAVPRDASTRIAS------VVGRIALVSMMPGEPVLPGKLAPTTATG 102 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 GLSS++PKGKRA T+ ++ AV G P +VDV++ + ++P VL ++V+AI Sbjct: 103 GLSSIIPKGKRAITVKVNEVIAVAGFALPGSYVDVLVSSKDANQQPFSVTVLLRVKVLAI 162 Query: 180 DHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 +D ++ V + TLELTP +A+ L A+++ LSLVLR+ D +S + D Sbjct: 163 AQETTADRDKPKVVNAVTLELTPHEAEKLDLARNIGALSLVLRNEFDTGKINSAGVRLSD 222 Query: 239 VQEEGKE 245 + Sbjct: 223 IIYSQSA 229 >gi|302381757|ref|YP_003817580.1| Flp pilus assembly protein CpaB [Brevundimonas subvibrioides ATCC 15264] gi|302192385|gb|ADK99956.1| Flp pilus assembly protein CpaB [Brevundimonas subvibrioides ATCC 15264] Length = 310 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 82/303 (27%), Positives = 125/303 (41%), Gaps = 50/303 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPH--HVQTEEVITENPAKFINVLISKGDLAVG 58 MK R+ I ++ V A+ + + SP VL++ DLA G Sbjct: 1 MKPARIAVICIAAVSAIGLAFVVRAMGSPSGEPTAVATAAPAPTRPMAKVLVAARDLAPG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPN------------------------------ 88 + LEW +P + V FI D P Sbjct: 61 QRLVEADLEWKDWPVDEVNPAFITDGSVPVPAAAAPEGEAAPATTDTTAESAVARVTRAA 120 Query: 89 -------AMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISS 140 A + G +VR PIL G+PI K+V +G +++ L G RA + +S+ S Sbjct: 121 NDLTTGGAKADYFGSVVREPILAGEPIVGRKIVRAGDSGYMAAYLEPGMRAMAIGVSVES 180 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKP--------TVTVVLSNIRVIAIDHN--IDSDERVL 190 A GG I P D VDV++ +V+ N++V+AID + D++ + Sbjct: 181 AAGGFILPGDRVDVIVTVEQQAGNDDDAGRAKFASRIVMQNVKVLAIDQSTRAGDDQQAV 240 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 VG+TATLE+ P A+ + A++ LSLVLRS AD + S S E I++ + Sbjct: 241 VGATATLEVAPQDAEVVALAKAAGTLSLVLRSYADTSGPSGRVSMPPRASERSTAIRVFR 300 Query: 251 AGV 253 G Sbjct: 301 GGE 303 >gi|150377241|ref|YP_001313836.1| SAF domain-containing protein [Sinorhizobium medicae WSM419] gi|150031788|gb|ABR63903.1| SAF domain protein [Sinorhizobium medicae WSM419] Length = 263 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 125/240 (52%), Gaps = 11/240 (4%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + R++ ++++ A +A+ + V+ EV + VL++ +L G + Sbjct: 1 MIRIVILLLALASGGAASWLALGMGDEPSVEVAEVEEAPAQE---VLVAAAELKRGAAIE 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 N L W + E + FI + +A EL G L + G+PIR +KL RG G LS Sbjct: 58 ENHLRWQPW-EGEIPPVFISRSSRADATTELKGSLALSDFVAGEPIREDKLAQRGTGYLS 116 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVI 177 SLLP GKRA + ++ S GG I PNDHVDVV + K +LSNIRV+ Sbjct: 117 SLLPSGKRAIAVRVTAESTAGGFILPNDHVDVVHTAVRPDAAGDAGKVVSRAILSNIRVL 176 Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+D + D ++G TATLE+ P Q A+ AA++ +SL LR+I+D + +S +++ Sbjct: 177 AVDQTVSQAADGTSVIGKTATLEVNPEQIAAVAAAEASGTVSLALRAISDNHEASVVEAE 236 >gi|304320646|ref|YP_003854289.1| CtpC protein [Parvularcula bermudensis HTCC2503] gi|303299548|gb|ADM09147.1| CtpC protein [Parvularcula bermudensis HTCC2503] Length = 253 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 70/258 (27%), Positives = 116/258 (44%), Gaps = 9/258 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVGM 59 MK RL+ ++V+ A + P + V+ S D+ G Sbjct: 1 MKAARLLILLVAIAAGGAAFFMLAGNDEPAVTTAVPTAPIQPRMAMAEVMFSAKDIPQGA 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL-EKLVDRGN 118 +++ +++WV +P NV + FI Q + + L R+ I PI + Sbjct: 61 ILSEGMVKWVKWPSANVPEFFITKDDQ-DFIDNLGLRRARLRIDANQPIYGVNTVAHGDR 119 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 G L+S+L G RA T + + GG I P D VD+ + + + +L NIRV+A Sbjct: 120 GMLASILTPGMRAVTARMGLEETSGGFILPGDRVDIFATGIGDDGQMETSAILRNIRVLA 179 Query: 179 IDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 ID + ++ L GST T EL+P Q + + A+ +L+LVLRS+ DL+P + Sbjct: 180 IDQVTNVTDEQTALNGSTVTFELSPAQVPSFIGARDNKQLTLVLRSVYDLSPETGMPI-- 237 Query: 237 WDVQEEGKEIQIIKAGVI 254 V +E+ +I+ G Sbjct: 238 --VDTSPEEVVVIRFGQG 253 >gi|323529414|ref|YP_004231566.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] gi|323386416|gb|ADX58506.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] Length = 278 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 14/204 (6%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 V ++ ++++G + N++ V +P +V G D + LDG +VR + G Sbjct: 37 TPVAVATAEVSLGQPLNANMIRTVNWPTASVPPGAFKDP------KALDGRVVRTSLEPG 90 Query: 106 DPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VR 158 +P+ KL + GGLS+++ +GKRA T+ ++ V G P ++VDV++ + Sbjct: 91 EPVIESKLAPQGTKGGLSAVIGEGKRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPESK 150 Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLS 217 + ++ +VL I V+A+ + D+ + V + TLE+TP QA+ L A+SV LS Sbjct: 151 TADPQQSISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDLARSVGSLS 210 Query: 218 LVLRSIADLNPSSSEDSDVWDVQE 241 LVLR+ D P + + + Sbjct: 211 LVLRNQIDDRPLPTGGATKITLLG 234 >gi|82703478|ref|YP_413044.1| Flp pilus assembly CpaB [Nitrosospira multiformis ATCC 25196] gi|82411543|gb|ABB75652.1| Flp pilus assembly CpaB [Nitrosospira multiformis ATCC 25196] Length = 261 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 119/235 (50%), Gaps = 18/235 (7%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 IV+S + L A ++A R + I V+++ D+ VG +TP++L+ Sbjct: 1 MIVISLLLGLAAVVVAGRWI----------IDRASVDAATVIVASRDIDVGTRLTPDMLQ 50 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126 +P V +G D + +V+V +++G+P+ KL +G GGLS ++ Sbjct: 51 PSDWPRATVPEGSFQDAKLLDT------RVVKVNLVRGEPLLEAKLAPQGAAGGLSGVIA 104 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186 +GKRA T+ ++ + G P ++VD+++ KP +VL I V+A+ ++ D Sbjct: 105 EGKRAITVKVNEIVGLAGFALPGNNVDILVNAKDENDKPISKIVLERILVLAVGQDLGRD 164 Query: 187 E-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 E + + TLE+TP +A+ L A+S+ LSLVLR+ D +P ++ D+ Sbjct: 165 ETKPKAVTAVTLEVTPQEAEKLDLARSIGTLSLVLRNQIDKSPGTTAGVRTRDLL 219 >gi|114705457|ref|ZP_01438365.1| pilus assembly protein cpaB [Fulvimarina pelagi HTCC2506] gi|114540242|gb|EAU43362.1| pilus assembly protein cpaB [Fulvimarina pelagi HTCC2506] Length = 282 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 94/267 (35%), Positives = 152/267 (56%), Gaps = 14/267 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQT---EEVITENPAKFINVLISKGDLAV 57 M ++++ + V+ + A+ AG++A+++ +P + + P K +VLIS GD+ + Sbjct: 10 MNRSQIIVVGVAALAAIGAGLLALKVSTPSQQEPVIITAAPAQPPVKLEDVLISSGDVPM 69 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 GM N L W +P + + +GFI +P A+ EL+G + R G+P+R KL+ Sbjct: 70 GMRF-DNGLSWQKWPVDGIGEGFILKNDRPEAIDELNGSIARQAFFAGEPVRSSKLIQSD 128 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVLS 172 +G +S+LLP GKRA + I+ ++A GG I PNDHVDV+M R + VL Sbjct: 129 SGFMSALLPAGKRAVAVQIAAATAAGGFILPNDHVDVIMTRRVEGDGGANAKILTETVLR 188 Query: 173 NIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPS 229 N+RV+AID I+ +R +VGS ATLE+ QA+AL AAQ +A + L LRS+AD P Sbjct: 189 NLRVLAIDQTIEDAEGQRNVVGSVATLEVDGEQAEALTAAQQIADRFVLSLRSLADSIPG 248 Query: 230 SSEDSDVWDVQEEGKE--IQIIKAGVI 254 S + +E+ + ++I++ G + Sbjct: 249 SPGYAAFLLAEEKARRGPVRIVRYGKV 275 >gi|84386798|ref|ZP_00989823.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01] gi|84378326|gb|EAP95184.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01] Length = 293 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 25/271 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RLM + + F V GI + L ++ + + + VL+ + +G Sbjct: 1 MTAKRLMLLSL---FCSVLGISVLLLSQTNNESASTSSKQAVKQTVKVLVPTRTIEIGQA 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 TPN W P++ + + + + L R ++K + + + G Sbjct: 58 YTPNSFRWKEVPQQELENYIDHVTPEDISADHTMSGLARTKLVKDSILSKADITEPEGGY 117 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVV 170 LS L G RA ++ + ++ G I+P D VD++++ S + VT + Sbjct: 118 SLSLKLQPGYRAISVPVDQVTSNSGFIEPGDRVDILLLGSQDGELLRYGNSSQGLYVTTI 177 Query: 171 LSNIRVIAID--HNIDSDERVLVG----------STATLELTPMQAKALVAAQSVAKLSL 218 + + RV+A + +S ++ S+ +LE+TP QA +V A+ + KL+L Sbjct: 178 VHDARVLAFNDKQTAESYQKARESNQHKKVVPDDSSVSLEVTPEQANQVVLAKQLGKLTL 237 Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEIQII 249 VLR + + V Q++ Sbjct: 238 VLRGQNEAQDQPQHANAVTLKVISPDTTQVL 268 >gi|154250688|ref|YP_001411512.1| SAF domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154154638|gb|ABS61855.1| SAF domain protein [Parvibaculum lavamentivorans DS-1] Length = 250 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 82/255 (32%), Positives = 136/255 (53%), Gaps = 16/255 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R+ +V++ V A +A ++A LVS + E+ + E VL++ +L +G Sbjct: 1 MNPVRIGVLVLALVAAGLAALLARGLVSGNDEPVEQKVVEA--PTTEVLVASSNLQLGQR 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + L W +P+ ++ +I P A++E G + R +L G+P+ EKLV G Sbjct: 59 IGGGDLRWQRWPDTSLNGAYITRNQSPAALEEYTGSVARASLLSGEPVTSEKLVTLTGAG 118 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 +S+L+ G RA + I+ ++ GG I PND VD+V + +L NIRV+AI Sbjct: 119 FMSALIEPGMRATAISITPETSAGGFILPNDRVDIVDLAKG-------QTILRNIRVLAI 171 Query: 180 DHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 D D E+V VG TATLELTP Q + + A++ ++ L LRS+A+ + + SE + Sbjct: 172 DQRFDEKAGEQVAVGRTATLELTPAQVEVVSVAEAEGRIGLSLRSMAEQDLAGSEKT--- 228 Query: 238 DVQEEGKEIQIIKAG 252 V E G +++++ G Sbjct: 229 -VAEGGSVVKVVRYG 242 >gi|254466356|ref|ZP_05079767.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium Y4I] gi|206687264|gb|EDZ47746.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium Y4I] Length = 285 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 106/252 (42%), Gaps = 9/252 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58 M+ + ++V A A ++A +S + E ++V ++ L G Sbjct: 1 MRAVFGLVLIVGVALAGGAVMMAKNYISAYQNELARERAARAETVPTVDVFVATKPLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDR- 116 ++ + + V +PE + +G + Q D +V + K + + K+ Sbjct: 61 ERLSQDAVRAVRWPENAIPEGAYTTLDALFPPQSGDKLRVVLRAMEKDEAVMAVKVTAPG 120 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLS 172 + G++S L +G RA + + +SS V G ++P D VDV + R ++ + Sbjct: 121 EDAGITSRLQRGMRAFAIKVDVSSGVSGFLRPGDKVDVYWTGMMPGAGGSRGEVTRLIET 180 Query: 173 NIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 N+ ++A+D + D ++ T T+ P Q AL AQ+ +LSL L D +S Sbjct: 181 NVELVAVDQSAGGDINEAIIARTVTVAAKPAQVAALAQAQTTGRLSLALVGAGDDTIASV 240 Query: 232 EDSDVWDVQEEG 243 + D + G Sbjct: 241 VEVDQRTLLGLG 252 >gi|149912018|ref|ZP_01900612.1| Flp pilus assembly protein CpaB [Moritella sp. PE36] gi|149804917|gb|EDM64951.1| Flp pilus assembly protein CpaB [Moritella sp. PE36] Length = 288 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 27/269 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RL+ + V + + L ++ K VL+S D+ +G Sbjct: 1 MNAKRLVYLSVCMSLLGL-----IWLFFSLSAPVNSTPKQDTVKTYEVLVSTQDVVIGRP 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + ++ W E +V D ++Q L + + G + + GG Sbjct: 56 YSASLFAWKTVDESSVRDRIDFIDKANFSIQALKNTVAAADFVTGQILSPSDFLKPEQGG 115 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVV 170 LS +L RA ++ + +A G+I P DHVDV++ R + V + Sbjct: 116 FLSVMLRPNYRAVSIPVDEVTANSGLIGPGDHVDVLLLASKSQELRSRGNETQSLYVKTI 175 Query: 171 LSNIRVIAIDHNID-----SDERVLVG-----STATLELTPMQAKALVAAQSVAKLSLVL 220 N+RV+A + + ++ G ST TLE++P+QA + A + LS+VL Sbjct: 176 AQNVRVLAFNDALQLARYMEKQKHNKGVIPDNSTVTLEVSPLQANQITLANQLGTLSMVL 235 Query: 221 R--SIADLNPSSSEDSDVWDVQEEGKEIQ 247 R + + + + +V D+ K++Q Sbjct: 236 RSKNSQETDSAVIPAVNVDDILPAIKQVQ 264 >gi|307726374|ref|YP_003909587.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] gi|307586899|gb|ADN60296.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] Length = 278 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 14/204 (6%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 V + ++++G + N++ V +P +V G D + LDG +VR + G Sbjct: 37 TPVAVVTAEVSLGQPLNANMIRTVNWPTASVPPGAFKDP------KALDGRVVRTSLEPG 90 Query: 106 DPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VR 158 +P+ KL + GGLS+++ +GKRA T+ ++ V G P ++VDV++ + Sbjct: 91 EPVIESKLAPQGTKGGLSAVIGEGKRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPEAK 150 Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLS 217 + + +VL I V+A+ + D+ + V + TLE+TP QA+ L A+SV LS Sbjct: 151 TADPQHSISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDLARSVGSLS 210 Query: 218 LVLRSIADLNPSSSEDSDVWDVQE 241 LVLR+ D P + + + Sbjct: 211 LVLRNQIDDRPLPTGGATKITLLG 234 >gi|149176582|ref|ZP_01855195.1| Flp pilus assembly CpaB [Planctomyces maris DSM 8797] gi|148844695|gb|EDL59045.1| Flp pilus assembly CpaB [Planctomyces maris DSM 8797] Length = 349 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 114/261 (43%), Gaps = 24/261 (9%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M +V++ LVA + ++++ Q E K NVL++ ++ G + + + Sbjct: 1 MMLVIAVGCGLVAMLGVRQVLNKDDQQAE-------VKTANVLMTIAEIPPGTPLNESNV 53 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 ++ ++P + V +G + +++ ++ + G+ + KL ++G G S +P Sbjct: 54 KFKSWPIDQVPEGAVTK------LEQYKDRSIKTRAVPGEIVMKAKLSEQGVRGASVEIP 107 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNIRVIAIDHN 182 GKR T + ++ G+I P D VDV + V+L +++ A DH Sbjct: 108 DGKRVFTTSVDMTKTHSGLILPGDFVDVYVTFTARKPEGGMSTITKVILERVKIFATDHL 167 Query: 183 ID---SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 D ++ + +L L+P + L A+ ++ L LR+ +D S++ DV Sbjct: 168 TDVGGTESNQVKSKNISLLLSPREGAMLKLAEKKGEVHLALRAQSD----STDSEDVQFD 223 Query: 240 QEEGKEIQIIKAGVIVNKDGE 260 +E E+ I+ + E Sbjct: 224 DDELAEVFSIEGSEYLKDGEE 244 >gi|114764945|ref|ZP_01444118.1| CpaB family protein [Pelagibaca bermudensis HTCC2601] gi|114542657|gb|EAU45681.1| CpaB family protein [Roseovarius sp. HTCC2601] Length = 286 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 115/271 (42%), Gaps = 13/271 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVG 58 M+L + ++ A A +A + + +E + + + +A G Sbjct: 1 MRLVFGLVLLAGLALAGFAVHLAQKQFGAYQNALQEERQKAVEAVPTGRIYVMTRPIARG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 ++TP+ ++ +P E + +G + + +V + K D + ++ + G Sbjct: 61 EILTPDAVKLAPWPMEIMPEGIFTEKRPLFVEGD-APRVVVNAMDKFDAVLDGRVSEPGG 119 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------KPTVTVVL 171 + GL+S L +G+RA + + +++ V G ++P D VDV + ++ Sbjct: 120 DAGLTSRLERGERAFAIKVDVATGVSGFLRPGDRVDVYWTGRVPGNDPNLPQGDVTKLIE 179 Query: 172 SNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 + IR+IA+D +S+ + T T+ +TP Q L AQS +LSL L + D + Sbjct: 180 TGIRLIAVDQTAESETANPTTIARTVTVAITPQQVAGLAQAQSTGRLSLSLMAANDETVA 239 Query: 230 SSEDSDVWDVQE-EGKEIQIIKAGVIVNKDG 259 + + D + +E Q+ K + V Sbjct: 240 DAIEVDQRALLGLTKREQQVEKKSIQVCTTR 270 >gi|91788410|ref|YP_549362.1| Flp pilus assembly CpaB [Polaromonas sp. JS666] gi|91697635|gb|ABE44464.1| Flp pilus assembly CpaB [Polaromonas sp. JS666] Length = 284 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 25/249 (10%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 L+ I V+ V A A I+A R +S + A V ++ D+++G + Sbjct: 3 NTRALVMIAVAVVLAFGAVIVAARWIS----------AQASADTSKVAVAAVDISLGARL 52 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120 +P ++ V +P + G I D ++L+ + R I +G+P+ KL GG Sbjct: 53 SPEMVRMVDWPASAMPPGAITD------AKQLETRVTRTSIQRGEPVMEGKLAPPGTQGG 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-------KPTVTVVLSN 173 LS+++ +GKRA T+ ++ V G P + VD+++ + +VL Sbjct: 107 LSAVVAEGKRAMTVRVNDVVGVAGFALPGNFVDILVNTQDEPGKGGAGKDQTISKIVLER 166 Query: 174 IRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 I V+AI DE + V + TLELTP QA+ L A+SV LSLVLR+ D NP +++ Sbjct: 167 ILVLAIAQESSRDETKPKVVNAVTLELTPDQAEKLDLARSVGTLSLVLRNQVDPNPVNTK 226 Query: 233 DSDVWDVQE 241 + + + Sbjct: 227 GATKTTLLD 235 >gi|116620531|ref|YP_822687.1| SAF domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116223693|gb|ABJ82402.1| SAF domain [Candidatus Solibacter usitatus Ellin6076] Length = 299 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 107/251 (42%), Gaps = 19/251 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + + + + A A ++ R++ T + V ++ +L VG + Sbjct: 1 MNKRFVGVLTFAFLVAAGASLVLYRVLINRPQA-----TNAAPTMVQVALATRNLEVGTL 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119 + + ++ +P V G V +++ G V I +PI +L +G G Sbjct: 56 LKEDDVKLSDWP-GAVPIGATAQV------KDVLGRGVTTAIFAKEPIIESRLAPKGAGG 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIR 175 GL++++P G RA + ++ V G + P HVD+++ + +L NI Sbjct: 109 GLAAMIPSGMRAVAVRVNEVVGVAGFVVPGMHVDILISGNTPGGDGNLGTLTKTLLQNIE 168 Query: 176 VIAIDHN--IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V++ + D++ + ++ L +TP QA+ L A + + L+LR+ D S + Sbjct: 169 VLSAGQDFKKDNEGKPIMVQVVNLLVTPEQAEQLSLASNQTTIQLILRNPLDHEISKTSG 228 Query: 234 SDVWDVQEEGK 244 + + + G+ Sbjct: 229 TALRSLFTGGR 239 >gi|253996770|ref|YP_003048834.1| Flp pilus assembly protein CpaB [Methylotenera mobilis JLW8] gi|253983449|gb|ACT48307.1| Flp pilus assembly protein CpaB [Methylotenera mobilis JLW8] Length = 298 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 23/252 (9%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + IVVS L A ++A R +S V+++ ++ +G + Sbjct: 3 NPRAFLMIVVSVGIGLGAVVLASRWISQQ---------AATVASSKVVVAAINIDLGTPL 53 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGG 120 TP +L+ +P +V G DD+ +A +V+ +L+G+P+ KL GG Sbjct: 54 TPQMLKVADWPRGSVPVGATDDIKTLDA------RVVKTSLLQGEPVLESKLAPLGATGG 107 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVLSNI 174 LS+++ +G RA T+ ++ V G P ++VD+V+ K +VL +I Sbjct: 108 LSAVIAEGNRAMTVRVNDVVGVAGFALPGNYVDIVVNTEDESVKAENVNKSISKIVLEHI 167 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + DE + V + TLE+TP QA+ L A+SV LSLVLR+ D N ++E Sbjct: 168 MVLAVAQEQNRDETKPKVVNAVTLEVTPAQAEKLDLARSVGTLSLVLRNQIDKNVVTTEG 227 Query: 234 SDVWDVQEEGKE 245 S ++ E Sbjct: 228 STKKNLLNRVDE 239 >gi|264678239|ref|YP_003278146.1| pilus assembly transmembrane protein [Comamonas testosteroni CNB-2] gi|262208752|gb|ACY32850.1| pilus assembly transmembrane protein [Comamonas testosteroni CNB-2] Length = 281 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 14/206 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ D+ +G + PN+L V +P ++ DG D MQ+L +V+V +L+G+ Sbjct: 38 KVVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGE 91 Query: 107 PIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------RS 159 + KL GGL++++ GKRA T+ ++ V G P ++VDVV+ Sbjct: 92 AVLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQNGK 151 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 E + VL N+ V+A+ D DE + V S TLEL+P A+ L A+SV LSL Sbjct: 152 TEESRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPEDAEKLDLARSVGNLSL 211 Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGK 244 VLR+ D +P+S+ + + Sbjct: 212 VLRNQIDKDPTSTAGITKHQLFGTPE 237 >gi|114799072|ref|YP_761692.1| pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444] gi|114739246|gb|ABI77371.1| pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444] Length = 281 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 14/241 (5%) Query: 25 RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84 ++V+ + +I + I VL + DL +G + L+W +PE V +G + Sbjct: 30 QVVTETVTRDNNIIEKEQVSEIKVLTASRDLTIGEQIKAEDLQWSIWPELGVAEGQYTET 89 Query: 85 HQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL-PKGKRAATMDISISSAVG 143 P A++EL G +V++PI K +PI +++V RG GL +L + RA ++ IS SA G Sbjct: 90 AAPGAVEELTGAVVKMPIYKLEPIMPQRVVKRGEAGLLPVLMGEDMRAVSIGISPESASG 149 Query: 144 GMIKPNDHVDVVMVRSLSER--------KPTVTVVLSNIRVIAIDHNI---DSDERVLVG 192 G I PND VD+++ + + VL N+RV+AID + +E +G Sbjct: 150 GFILPNDRVDLILTYEQTPSATNGLTSARTVSMTVLQNVRVLAIDQTYAPGEPEESTRIG 209 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ--EEGKEIQIIK 250 TATLE+ P +A+ + +QS +LSL LR + DL SS + E + II+ Sbjct: 210 QTATLEVLPSEAELVALSQSKGQLSLALRPLNDLAVSSPRKPRLELNGGDEGEGAVMIIR 269 Query: 251 A 251 Sbjct: 270 N 270 >gi|299532591|ref|ZP_07045980.1| pilus assembly transmembrane protein [Comamonas testosteroni S44] gi|298719394|gb|EFI60362.1| pilus assembly transmembrane protein [Comamonas testosteroni S44] Length = 281 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 65/208 (31%), Positives = 107/208 (51%), Gaps = 14/208 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ D+ +G + PN+L V +P ++ DG D MQ+L +V+V +L+G+ Sbjct: 38 KVVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGE 91 Query: 107 PIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------RS 159 + KL GGL++++ GKRA T+ ++ V G P ++VDVV+ Sbjct: 92 AVLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQNGK 151 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 E + VL N+ V+A+ D DE + V S TLEL+P A+ L A+SV LSL Sbjct: 152 TEESRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPEDAEKLDLARSVGNLSL 211 Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEI 246 VLR+ D +P+S+ + + + Sbjct: 212 VLRNQIDKDPTSTAGITKHQLFGTPEPV 239 >gi|319779650|ref|YP_004130563.1| SAF domain protein [Taylorella equigenitalis MCE9] gi|317109674|gb|ADU92420.1| SAF domain protein [Taylorella equigenitalis MCE9] Length = 325 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 101/262 (38%), Gaps = 11/262 (4%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + ++A A + + Q E + I ++ GD+ G ++ Sbjct: 5 RKSWYIAGFAIGAGILATFSANKYMKEKISQIEANHRQVMIPRI---VAAGDIPEGTIID 61 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 +IL PE V + P+ + ++G ++ P+ GDP+ S Sbjct: 62 SSILAVRDIPENWVSSDSLS----PDEFERIEGKIITSPLTAGDPVLWAHTSTVSRRPFS 117 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 + G+RA TM + ++V G+I P D +D+ + R +L + V+A D Sbjct: 118 EKVAVGRRAVTMPVDTINSVSGLIVPGDLIDLYVSFKYRNRD-ITAPLLQGVLVLATDKE 176 Query: 183 ID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED-SDVWDV 239 +D ST TL+ +P +A LVAA+ ++ LR+ D S D+ + Sbjct: 177 SKLTNDGSEREFSTVTLDTSPEEAAKLVAARQDGVITAFLRNPDDKKASQKGVKGDLASI 236 Query: 240 QEEGKEIQIIKAGVIVNKDGEG 261 I++ V +G Sbjct: 237 LGIATSGPIVRKKASVIYGDQG 258 >gi|254441777|ref|ZP_05055270.1| Flp pilus assembly protein CpaB [Octadecabacter antarcticus 307] gi|198251855|gb|EDY76170.1| Flp pilus assembly protein CpaB [Octadecabacter antarcticus 307] Length = 286 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 103/251 (41%), Gaps = 10/251 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58 M+ + + V A A + + + + + E ++V + G Sbjct: 1 MRAVFGLVLFVGMGLAGFAIYMVQGYLQEQNANLERQRAAMELAVPTVHVYAVNRVMEHG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 +T + + + E + +G + + + +V + +PI K+ G Sbjct: 61 EQITMQDIIMIRYAEPYLPEGVFRTAEELFSAGPDELRVVIRQMEPNEPILATKVTAPGE 120 Query: 119 -GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVL 171 GG+++LL +G RA T+++ +SS V G + P D VDV ++ ++ Sbjct: 121 VGGITALLARGMRAFTIEVDVSSGVSGFLNPGDRVDVYWTGRVNGIDGANTNGEFTKLIQ 180 Query: 172 SNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + I ++AID +S + T T+++TP Q AL AQ+ LSL L D +S Sbjct: 181 AGIELVAIDQTSESGRIGASIARTVTVQVTPDQVAALAQAQATGNLSLSLVGREDDTVAS 240 Query: 231 SEDSDVWDVQE 241 S + + + Sbjct: 241 SVEVNQASLLG 251 >gi|78186538|ref|YP_374581.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273] gi|78166440|gb|ABB23538.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273] Length = 262 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 114/243 (46%), Gaps = 19/243 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + + + ++ + +A A R V+ V+I + +G +T Sbjct: 1 MKKPIIAAIALILGAMAAFTAARWVNVAQHTGP-----------KVVIVALPIELGKAIT 49 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121 ++ V +P + G + ++ + RV ++ G+P+ KL +G GGL Sbjct: 50 AEQIKAVNWPGTDAPQGAYANTA------DVVSRIARVSMMPGEPVLPGKLAPKGATGGL 103 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 +S++P GKRA T+ ++ AV G P +VDV++ + +P VL+ ++V+AI Sbjct: 104 ASIIPDGKRAITVKVNEVIAVAGFALPGSYVDVLVSGKDASHQPFARTVLNRVKVLAIAQ 163 Query: 182 NIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 ++ ++ V + TLELTP +++ L A+S+ LSLVLR+ D +S + D+ Sbjct: 164 ETTAEPDKPKVVNAVTLELTPHESEKLDLARSIGSLSLVLRNELDTGEENSAGVRMSDLM 223 Query: 241 EEG 243 Sbjct: 224 YAQ 226 >gi|294012240|ref|YP_003545700.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] gi|292675570|dbj|BAI97088.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] Length = 295 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 14/235 (5%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 L A +A +S E + V+++ L G VT + V +P Sbjct: 2 LGLAAVFVANSYLSR-----AEKVPPPEGGMAKVVVATVSLPFGSAVTAEKIRVVDWPAN 56 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAAT 133 +V G D Q ++ G +V I G+PI KL G +S++L RA Sbjct: 57 SVPPGAFRDPIQLTSLG--KGRVVLRQIEPGEPILASKLSGEGGRATMSAVLAPEMRAVA 114 Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIRVIAIDHNI-DSDE 187 + +S +A GG + P D VDV + R+L + + V+L RVIAID N D+ + Sbjct: 115 VRVSDVAAAGGFVLPGDTVDVFVTRTLQDPMGGASQQITDVLLQGTRVIAIDQNANDTSK 174 Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 VG TATLE+ + A+ LV AQ V +L+LVLR++ D + + + D+++ Sbjct: 175 DPAVGKTATLEVNQVDAQKLVLAQQVGQLTLVLRNLTDKPNPAVQTVGIEDLRDG 229 >gi|327189766|gb|EGE56910.1| putative cpaB pilus assembly protein [Rhizobium etli CNPAF512] Length = 304 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 102/248 (41%), Gaps = 8/248 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++ +V++ V A A +S + + + V ++ + G Sbjct: 1 MRSSTILSLVIAFVLAAAAVFGMREYLSDQKARLLAMNGMKAEERTLV-VAAKPMRFGDR 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + L+ + +P G + + I G+P+ K+ G Sbjct: 60 IRSENLKAIPWPSNETPAGSFVSIETVVGNDD-QPRYAMAAIDPGEPVLSSKITGAGERA 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175 LS+ L +G +A ++ ++ V G ++P+D VDV++ + V V+L ++ Sbjct: 119 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRGPEGNDQTFVDVLLQGVK 178 Query: 176 VIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+A+D D + V T T E+T +A+ L S+ LSL LR++A + + Sbjct: 179 VLAVDQTADERKDEPSVVKTVTFEVTTDEAQRLTLGSSIGTLSLALRNVASSSIEQTRPI 238 Query: 235 DVWDVQEE 242 V D+ Sbjct: 239 TVADLGGG 246 >gi|73542328|ref|YP_296848.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134] gi|72119741|gb|AAZ62004.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134] Length = 280 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 22/241 (9%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 + A + A R + + + V+++ DL +G + + L V +P + Sbjct: 17 GVAAVVSASRWLMEQSSNSVK----------QVVVAANDLNLGQPLNGSQLRLVNWPTAS 66 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATM 134 V G +D ++ L+G +VR + +G+P+ KL GGLS+++ GKRA T+ Sbjct: 67 VPPGAFED------LKLLEGRVVRTSLQRGEPVLDAKLAPIGTKGGLSAVINDGKRAITV 120 Query: 135 DISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNIRVIAIDHNIDSDE-RV 189 ++ V G P ++VDV++ + + +VL I V+A+ + D+ + Sbjct: 121 RVNDVVGVAGFALPGNYVDVIVNTNEEAKTAQNGSISKIVLEKILVLAVAQQVSRDDTQP 180 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQII 249 V + TLE+TP QA+ L A+SV LSLVLR+ D+ ++ + + + E + Sbjct: 181 KVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQMDVADINTGGATKGTLLGKAPEAPQV 240 Query: 250 K 250 K Sbjct: 241 K 241 >gi|78186672|ref|YP_374715.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273] gi|78166574|gb|ABB23672.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273] Length = 266 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 116/240 (48%), Gaps = 15/240 (6%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 ++ +A I R + ++E V+I+ + G + N L+ V Sbjct: 8 AIALTLGAMAAFITARWMGVVQSRSE-------VSGPTVVIAARAIDAGTAIAENQLKAV 60 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKG 128 +P V +G ++ G + RV ++ G+P+ KL +GGLSS++P G Sbjct: 61 QWPRSTVPEGASARTD------DVAGRIARVSMIAGEPVLPGKLAPTNASGGLSSIIPDG 114 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-E 187 KRA T+ ++ AV G P +VD+++ +ER+P VLS I+V+A+ ++ + Sbjct: 115 KRAITVKVNEVIAVAGFALPGSYVDILVSGRDAERQPFSRTVLSRIKVLAVAQETTAEPD 174 Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 + V + TLELTP +++ L A+S+ LSLVLR+ D +S + D+ + + Sbjct: 175 KPKVVNAVTLELTPHESETLDLARSIGVLSLVLRNELDTGEINSAGVRLADIIQAQSAGR 234 >gi|260462608|ref|ZP_05810814.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] gi|259031514|gb|EEW32784.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] Length = 351 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 113/254 (44%), Gaps = 12/254 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ IV++GVF ++A ++A ++ + N + V+++ L G + Sbjct: 1 MRANTIIMIVLAGVFGVLAVVLANIWLANQRGAIAQT---NEVQRDTVVVAAVALKFGDI 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG---VLVRVPILKGDPIRLEKLVDRG 117 ++ + L VA+P V G + G I +P+ K+ G Sbjct: 58 LSADKLREVAWPAGAVPAGAFKTTEELLTKDLPVGGGTKQALQSIGVNEPVLATKITGPG 117 Query: 118 N-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----PTVTVVLS 172 LS++L +G +A ++ ++ V G + P D VD+++ R++ + V V+L Sbjct: 118 QRATLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDILLTRTVRDDDGTDKSFVDVLLQ 177 Query: 173 NIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +++V+A+D D + V + TLE + A+ L A +LSL LR A ++ Sbjct: 178 SMKVLAVDQVADESKDSPTVVKSVTLEASTKDAQKLTLAAGAGQLSLALRQAAASKGETT 237 Query: 232 EDSDVWDVQEEGKE 245 E + D+ E Sbjct: 238 ERITLSDLTGETPA 251 >gi|329900777|ref|ZP_08272581.1| SAF domain protein [Oxalobacteraceae bacterium IMCC9480] gi|327549366|gb|EGF33934.1| SAF domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 323 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 11/241 (4%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 + + V+ + A ++A +S Q + I V+++KGDL G V++ Sbjct: 13 KTWLVLGVALTIGVGAALLARSFLSD---QIASIEARGKGPTIPVVVAKGDLNKGTVLSA 69 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 + + P E + P+ +DG + + G+ + + + S+ Sbjct: 70 DNVAVRQIPREFAHSASV----FPDQFARIDGQPIAYGLKSGESVMWGLMEGKKVPTFSA 125 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI 183 L G RA T+ + +++ G+++P D +D+++ K +L ++V+A Sbjct: 126 RLEAGHRAMTVPVDEINSISGLLEPGDSIDLIVTVDH-GGKKITFPLLQAVQVMATGQRA 184 Query: 184 DSD---ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 D ST TL TP QA+ ++ A+ K++ +LR+ AD P + D+ + Sbjct: 185 VDDPRTGERRQFSTVTLNTTPEQAQNVIVAREAGKITALLRNPADQAPMAGTRGDLAALL 244 Query: 241 E 241 Sbjct: 245 G 245 >gi|84516632|ref|ZP_01003991.1| CpaB family protein [Loktanella vestfoldensis SKA53] gi|84509668|gb|EAQ06126.1| CpaB family protein [Loktanella vestfoldensis SKA53] Length = 277 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 106/249 (42%), Gaps = 7/249 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58 M+ + ++V A A + + ++ Q I ++V ++ + G Sbjct: 1 MRAVFGLVLLVGMGLAGFAVYMVNQYMATQTAQLDRARQIAAQALVTVDVYVTTRSVTYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 +T + + V +P + + +G +V +P++ + + K+ + G Sbjct: 61 EYLTADDVRLVPYPRDYLPEGTFATEQSLFPQGTQTPRVVVLPMIANELVLTTKVSEPGA 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + GL++L+ G RA ++ +++ G+++P+D +DV L + + ++ S +++I Sbjct: 121 SRGLTALVEPGFRAFPVEGRVAAGF-GILRPDDRIDVYWTGRLRDGREVTNLIKSGLQII 179 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 A+ + + +++TP + L AQ+ +L+L L DL+ + D Sbjct: 180 AV---LGDAGNRGGPQSVVVQVTPEEVALLTQAQNSGQLTLALVGTGDLSETGPVTIDNS 236 Query: 238 DVQEEGKEI 246 + E + Sbjct: 237 ALTGEQDIV 245 >gi|294676058|ref|YP_003576673.1| Flp pilus assembly protein CpaB [Rhodobacter capsulatus SB 1003] gi|294474878|gb|ADE84266.1| Flp pilus assembly protein CpaB [Rhodobacter capsulatus SB 1003] Length = 291 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 113/265 (42%), Gaps = 20/265 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVG 58 M++ + +V+ A +A +A + +S V+ + ++ E + ++V++ + LA G Sbjct: 1 MRMIVALVLVLGVALAGLAVYMAQQQISQFQVERDRLVAEQRNAPQLVDVVVLRRPLAYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQP------------NAMQELDGVLVRVPILKGD 106 T L + ++ G V P E + Sbjct: 61 ERFTAADLGVIKMQVGHLPAGIFHSVATPQGAPEEAQAASVFPGGETRPRAALRAYDAYE 120 Query: 107 PIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 I K+ G + G+++ L RA T+ + ++ V G ++P D VDV ++ + Sbjct: 121 AILANKITAPGVDAGITASLSPNMRAFTISVDATTGVSGFLRPGDRVDVYWSGEVNGER- 179 Query: 166 TVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 ++ +N+R+IAID + D+D E + T T E+TP Q +L AQ +L+L L + Sbjct: 180 VTKLIDTNLRLIAIDQSADADRAEETQLAKTVTAEVTPEQVASLTLAQGTGELTLSLVGM 239 Query: 224 ADLNPSSSEDSDVWDVQEEGKEIQI 248 N + ++ + G ++Q Sbjct: 240 --QNTADPGAIEIDRNKLLGIQVQE 262 >gi|254461000|ref|ZP_05074416.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium HTCC2083] gi|206677589|gb|EDZ42076.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium HTCC2083] Length = 286 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 100/256 (39%), Gaps = 10/256 (3%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINV--LISKGDLAVGMV 60 + + +++ A VA + + V+ H E V ++ L+ G Sbjct: 1 MIFGVVLLIGIALAGVAVHMTQKYVNQHKAALLEAQANKTPVVPTVPVFVANRKLSYGDE 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + + +P + G + + + V K + I K+ + G Sbjct: 61 IKLKDIAVAQWPSNALPKGIFQSKEELFPIDQAGARYVMRATEKFEAILAVKITEPGKSV 120 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVLSN 173 GL S L G+ A T+ + +S V G ++P ++VDV + ++ S Sbjct: 121 GLQSRLEPGQSAFTIKVDSTSGVSGFLRPGNNVDVYWTGKVQANGEQRKSRTVTRLIESA 180 Query: 174 IRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 +R+IAID + + + ++ + T T+ +T +Q +L AQS +L+L L D + Sbjct: 181 VRIIAIDQSANEEVKKASIARTVTVAVTQLQGASLTQAQSTGRLNLSLVGERDETIAELI 240 Query: 233 DSDVWDVQEEGKEIQI 248 + D + + + Sbjct: 241 EVDQKQLLGIEEAQPV 256 >gi|167924331|ref|ZP_02511422.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei BCC215] Length = 281 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 12/204 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V ++ D+++G + PN L V +P +V G D ++ L+G + Sbjct: 29 VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82 Query: 98 VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 VR + +G+P+ KL GGLS+++ G RA T+ ++ V G P ++VDV++ Sbjct: 83 VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142 Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211 ++ +VL I V+A+ + D+ V + TLE++P QA+ L A+ Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202 Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235 SV LSLVLR+ D + S+ + Sbjct: 203 SVGTLSLVLRNQIDKDALSTGGAT 226 >gi|209546484|ref|YP_002278402.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537728|gb|ACI57662.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 305 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 102/248 (41%), Gaps = 8/248 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++ +V++ V A A +S + + + + ++ + G Sbjct: 1 MRSSTILSLVIAFVLAAAAVFGMREYLSDQKARLLAMNGVKAEERTLI-VAAKPMRFGDR 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + P L + +P G + + I G+P+ K+ G Sbjct: 60 IRPENLRAIPWPSNETPAGSFVSIETVVG-SDAQPRYAMAAIDPGEPVLSSKITGAGERA 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175 LS+ L +G +A ++ ++ V G ++P+D VDV++ + V V+L ++ Sbjct: 119 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRGPAGNDQTFVDVLLQGVK 178 Query: 176 VIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+A+D D + V T T E+T +A+ L S+ LSL LR+IA + + Sbjct: 179 VLAVDQTADERKDEPSVVKTVTFEVTTDEAQRLTLGSSIGTLSLALRNIASASVEQTRPI 238 Query: 235 DVWDVQEE 242 V D+ Sbjct: 239 TVADLGGG 246 >gi|221067359|ref|ZP_03543464.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1] gi|220712382|gb|EED67750.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1] Length = 281 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 14/208 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ D+ +G + PN+L V +P ++ DG D MQ+L +V+V +L+G+ Sbjct: 38 KVVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGE 91 Query: 107 PIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRS 159 + KL GGL++++ GKRA T+ ++ V G P ++VDVV+ Sbjct: 92 AVLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQAGK 151 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 + + + VL N+ V+A+ D DE + V S TLEL+P A+ L A+SV LSL Sbjct: 152 MEDSRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPGDAEKLDLARSVGNLSL 211 Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEI 246 VLR+ D +P+S+ + + + Sbjct: 212 VLRNQIDKDPTSTVGITKHQLFGTPEPV 239 >gi|53723206|ref|YP_112191.1| pilus assembly-related, exported protein [Burkholderia pseudomallei K96243] gi|76817358|ref|YP_336468.1| pilus assembly transmembrane protein [Burkholderia pseudomallei 1710b] gi|126444606|ref|YP_001064075.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] gi|126455786|ref|YP_001076988.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] gi|167829714|ref|ZP_02461185.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 9] gi|167899812|ref|ZP_02487213.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 7894] gi|167916475|ref|ZP_02503566.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 112] gi|217424287|ref|ZP_03455786.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|226194084|ref|ZP_03789685.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|237507313|ref|ZP_04520028.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] gi|242313081|ref|ZP_04812098.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] gi|254182584|ref|ZP_04889178.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|254187135|ref|ZP_04893650.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|254262844|ref|ZP_04953709.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] gi|254296484|ref|ZP_04963940.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 406e] gi|52213620|emb|CAH39674.1| putative pilus assembly-related, exported protein [Burkholderia pseudomallei K96243] gi|76581831|gb|ABA51305.1| pilus assembly transmembrane protein [Burkholderia pseudomallei 1710b] gi|126224097|gb|ABN87602.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] gi|126229554|gb|ABN92967.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] gi|157806446|gb|EDO83616.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 406e] gi|157934818|gb|EDO90488.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|184213119|gb|EDU10162.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|217392752|gb|EEC32775.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|225934029|gb|EEH30015.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|234999518|gb|EEP48942.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] gi|242136320|gb|EES22723.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] gi|254213846|gb|EET03231.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] Length = 281 Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 12/204 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V ++ D+++G + PN L V +P +V G D ++ L+G + Sbjct: 29 VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82 Query: 98 VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 VR + +G+P+ KL GGLS+++ G RA T+ ++ V G P ++VDV++ Sbjct: 83 VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142 Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211 ++ +VL I V+A+ + D+ V + TLE++P QA+ L A+ Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202 Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235 SV LSLVLR+ D + S+ + Sbjct: 203 SVGTLSLVLRNQVDKDALSTGGAT 226 >gi|296121061|ref|YP_003628839.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776] gi|296013401|gb|ADG66640.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776] Length = 390 Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 21/241 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ ++ ++V+ L+A + + + E I VL+++ ++ G Sbjct: 1 MKMKPMILMLVAVACGLIAMMGVQQTLGSRSG-------EGSGPKIKVLVARKEVQAGTP 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + + D I + + RV + +G + ++L ++G G Sbjct: 54 LDETCVGFKLVSKSEAPDDVISSKEEYDK------RAPRVKLYEGQYVLKKQLGNKGEYG 107 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNIRV 176 S +P G R T+ ++ + G++ P D VDV + S + + VL I V Sbjct: 108 ASMEIPPGMRVVTVPVTATMTHSGLLSPGDRVDVQVTYSYTRPKYGKTFKTRTVLQYIEV 167 Query: 177 IAIDH----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 A D + E +L + P Q L AQ L L+LR D P+ Sbjct: 168 WATDSVRMGTEAAKEDSSQSKNVSLLVYPGQGALLQLAQEKGTLHLLLRGRNDKAPAEQT 227 Query: 233 D 233 Sbjct: 228 G 228 >gi|254192395|ref|ZP_04898834.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] gi|169649153|gb|EDS81846.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] Length = 281 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 12/204 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V ++ D+++G + PN L V +P +V G D ++ L+G + Sbjct: 29 VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82 Query: 98 VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 VR + +G+P+ KL GGLS+++ G RA T+ ++ V G P ++VDV++ Sbjct: 83 VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142 Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211 ++ +VL I V+A+ + D+ V + TLE++P QA+ L A+ Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202 Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235 SV LSLVLR+ D + S+ + Sbjct: 203 SVGTLSLVLRNQVDKDTLSTGGAT 226 >gi|283769331|ref|ZP_06342230.1| Flp pilus assembly protein CpaB [Bulleidia extructa W1219] gi|283103988|gb|EFC05372.1| Flp pilus assembly protein CpaB [Bulleidia extructa W1219] Length = 228 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 100/235 (42%), Gaps = 27/235 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + + + AL +A+ L+S + + V ++ ++ Sbjct: 1 MKK---IKFIAAISGALTMVFLALFLISSSAGRGAQS--------TAVYVASKNIKANQQ 49 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL----VDR 116 +T ++LE+ P V +G EL G + +V ILK I E + Sbjct: 50 ITEDMLEYKKVPGNLVVEGA------AKNKDELLGKMAKVDILKNSVISKENVYKEGEPE 103 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 NGGL+ ++ KGKRA + + S+ + +++ D VD+++ + +LSN+++ Sbjct: 104 KNGGLTYVIAKGKRAISFPVEYSTGISSLLRGGDRVDIILT-RAKDSNFVSKTILSNVKI 162 Query: 177 IAIDHNID-----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +A+ ++ S ST T+EL+P L+ LSL LR+ D Sbjct: 163 LALGNDYSVGVNKSGSEGKSYSTVTVELSPEDCVKLMNGSKAGTLSLSLRTPGDN 217 >gi|225872753|ref|YP_002754210.1| putative flp pilus assembly protein CpaB [Acidobacterium capsulatum ATCC 51196] gi|225791215|gb|ACO31305.1| putative flp pilus assembly protein CpaB [Acidobacterium capsulatum ATCC 51196] Length = 271 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 18/249 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +L ++ + V + ++ R ++ + + + +AVG V Sbjct: 1 MKSRQLTALLAALVISGGFTLLLGRKLTHSAHRAA--------PQKQYMAAARPIAVGEV 52 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + ++ + +P G + +++ G P+ G PI L G+ Sbjct: 53 IQAADVKTILWPANLPLQGGMAT------TKDVIGRAAIFPVTVGQPILSTDLAAPGSSL 106 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-KPTVTVVLSNIRVIA 178 G+++ +P G RA + AVGG I P HVDV++ +P VL N V+A Sbjct: 107 GITTRIPNGMRAIALHTDDVIAVGGFIFPGSHVDVLVTYRNPGSPQPITATVLQNALVLA 166 Query: 179 IDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 H D + + TL L+P A+ V A + + VLR+ AD +D+ Sbjct: 167 TGHQTQPDPQGKPTTVNIVTLLLSPEDAERAVLASTQGTIHFVLRNGADQQKGMPPPADL 226 Query: 237 WDVQEEGKE 245 ++ + Sbjct: 227 AELDGYSPQ 235 >gi|167648153|ref|YP_001685816.1| Flp pilus assembly protein CpaB [Caulobacter sp. K31] gi|167350583|gb|ABZ73318.1| Flp pilus assembly protein CpaB [Caulobacter sp. K31] Length = 296 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 78/295 (26%), Positives = 135/295 (45%), Gaps = 43/295 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVG 58 M R+M ++++ V A+ ++ +++S P VL++K DLA+G Sbjct: 1 MNPLRVMIVLIAAVSAIGLAVVMQKMMSGKAPSAPIAQASAPVGKPMTQVLVAKRDLAIG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQ-------------------------PNAMQEL 93 +T + W +P + + FI + + + Sbjct: 61 QRLTAADVTWQPWPSDTINAAFITNGAADPVPAKATAKAAKAVGDVAEGMIGGVTPEKAV 120 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 +G +VR PIL G+PI K+V G GG LS +L GKRA + ++ +AVGG + P D V Sbjct: 121 EGAIVRDPILAGEPITSRKIVRGGEGGYLSVVLSPGKRAMAVPVTSETAVGGFVLPGDRV 180 Query: 153 DVVMVRS---------LSERKPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTP 201 DV+ R S + ++ N+RV+A+D + D + +V +TATLE+ P Sbjct: 181 DVIQTREAQSVGEGEGASGKHTIAETIVQNVRVLALDQATAAEKDAKTIVATTATLEVGP 240 Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256 ++A+AL A++ ++L LR+ DL S + +E ++I + G N Sbjct: 241 IEAEALTRAKAAGPVTLTLRAYTDLGGPSG----LAVRSQEASVVRINRGGETSN 291 >gi|317154606|ref|YP_004122654.1| Flp pilus assembly protein CpaB [Desulfovibrio aespoeensis Aspo-2] gi|316944857|gb|ADU63908.1| Flp pilus assembly protein CpaB [Desulfovibrio aespoeensis Aspo-2] Length = 273 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 59/275 (21%), Positives = 120/275 (43%), Gaps = 30/275 (10%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 L+ I +S + AL G++ S T++ + A+ + V+++ DL G+ +T Sbjct: 5 ARALIQIGISLILALGTGVLIFMWTSGV---TQQPVAAPRAETVPVVVALTDLRPGIKLT 61 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGG 120 P +LE F ++ G + + G ++ V + + + KL D GG Sbjct: 62 PAMLETRQFTPDSRPSGAFGEPGLLD------GRVLGVAVGANEAVTEAKLADASVIGGG 115 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIRVI 177 +S+L+ GKRA ++ + + G ++P D VDV++ ++ +P +VL ++V+ Sbjct: 116 VSALIEPGKRAMSVKGNAVMGLAGFVRPGDRVDVIVSLVQGRGNQEEPVTKLVLERVKVL 175 Query: 178 AIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 A + + + ++ TLELTP +++ L A + L+ LR+ D + ++ Sbjct: 176 ATGTELQAPDTEGKAASVDVYTLELTPDESERLALAATQGTLNFALRNATDTDKVLTDGV 235 Query: 235 DV-------------WDVQEEGKEIQIIKAGVIVN 256 V V+ +++I G Sbjct: 236 TVNKALAALRPAPKPAPVRRNQVSVEVITGGETTT 270 >gi|167744174|ref|ZP_02416948.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 14] Length = 281 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 12/204 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V ++ D+++G + PN L V +P +V G D ++ L+G + Sbjct: 29 VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82 Query: 98 VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 VR + +G+P+ KL GGLS+++ G RA T+ ++ V G P ++VDV++ Sbjct: 83 VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142 Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211 ++ +VL I V+A+ + D+ V + TLE++P QA+ L A+ Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202 Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235 SV LSLVLR+ D + S+ + Sbjct: 203 SVGTLSLVLRNQVDKDALSTGGAT 226 >gi|187927688|ref|YP_001898175.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J] gi|187724578|gb|ACD25743.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J] Length = 283 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 24/252 (9%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 ++ ++V+ V + A + A R +S + + V+++ D+ +G + Sbjct: 3 NARAIVMLIVALVAGIAAVVSASRWLSQQSTSSVK----------QVVVAASDMDLGQPL 52 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120 L V++P ++ G DD + L G +VR + KG+PI KL GG Sbjct: 53 GNEQLRTVSWPAGSLPPGTFDDP------KALQGRVVRASLQKGEPILENKLAPIGTKGG 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV------VLSNI 174 LS+++ +GKRA T+ ++ V G P + VDV++ + + + VL I Sbjct: 107 LSAVIAEGKRAITVRVNDVVGVAGFALPGNLVDVIVNTNEDAKSASNNNNSISKIVLEKI 166 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D+ +++ Sbjct: 167 LVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQVDVAATATGG 226 Query: 234 SDVWDVQEEGKE 245 + + Sbjct: 227 ATKGTLLGTPAA 238 >gi|329890997|ref|ZP_08269340.1| flp pilus assembly protein CpaB [Brevundimonas diminuta ATCC 11568] gi|328846298|gb|EGF95862.1| flp pilus assembly protein CpaB [Brevundimonas diminuta ATCC 11568] Length = 310 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 76/303 (25%), Positives = 125/303 (41%), Gaps = 50/303 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ I ++ + A+ ++ + S VL++ DL G Sbjct: 1 MKPAKIAVICIAALAAIGLALVVRAMGSSGQPTATATAAVETRPMAKVLVAARDLEPGRR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDV------------------------------------ 84 + L W +P + + FI D Sbjct: 61 LVDADLSWKDWPADELNPLFITDGPPPPSKAEGAAAENAAVEGAGDAKSTTVDKAMKAVA 120 Query: 85 --HQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSA 141 + P A + G +VR PIL G+P+ K+V +G +++ L G RA + +++ +A Sbjct: 121 ELNTPGAKSDYIGAVVREPILAGEPLVARKIVRAGDSGYMAAYLEPGMRAMAIRVTVETA 180 Query: 142 VGGMIKPNDHVDVVMVRSLSERK------PTVTVVLSNIRVIAIDHN--IDSDERVLVGS 193 GG I P D VDV++ R + + V+ N++V+AID + DE+ +VG+ Sbjct: 181 AGGFILPGDRVDVLLTREVKGSGDDGGTKYSAATVMRNVKVLAIDQSTRAAEDEQAVVGA 240 Query: 194 TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS---SEDSDVWDVQEEGKEIQIIK 250 TATLELT A+ L A+S +LSLVLRS AD S G +++ + Sbjct: 241 TATLELTGRDAEVLALAKSEGELSLVLRSYADTAGPSGHVPGAVRGRATGGGGSVVRVYR 300 Query: 251 AGV 253 G Sbjct: 301 EGQ 303 >gi|325108089|ref|YP_004269157.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM 5305] gi|324968357|gb|ADY59135.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM 5305] Length = 418 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 109/248 (43%), Gaps = 20/248 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ ++ + + L+A + ++++ + + + + VL++ D++ G++ Sbjct: 1 MKMKTILVLAFAVGCGLIAMVGVQQMIAQQSNKDQN-------QTVEVLVAAQDISPGVL 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + P E V + + +E + VP++ GD IR KL RG Sbjct: 54 LNQANCAFKKLPVEGVPSDAVR------SKEEYAERGLLVPVMAGDIIRKSKLGARGEIA 107 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----PTVTVVLSNIRV 176 S+ +P G R ++ ++ + G+++P D VD+ + + + ++L I V Sbjct: 108 ASASIPAGMRTVSIQVNDTKTHSGLLQPGDRVDLQVTYEVRTSEGFRVTKTAILLEYIEV 167 Query: 177 IAID---HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 A D + + + + TL +TP QA + A + +L ++RS AD + + E Sbjct: 168 FASDAFRNLEAGESKEIKAKNITLLVTPDQANFIQLANTKGELVPIMRSRADSHLITPEG 227 Query: 234 SDVWDVQE 241 D + E Sbjct: 228 VDAQVIAE 235 >gi|114568969|ref|YP_755649.1| Flp pilus assembly CpaB [Maricaulis maris MCS10] gi|114339431|gb|ABI64711.1| Flp pilus assembly CpaB [Maricaulis maris MCS10] Length = 278 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 19/227 (8%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + +L ++ D+ +G ++ W A+P+E + G+I + ++ + + G +VR PI Sbjct: 42 PAVRILAARRDVEIGERISAADFYWQAWPDEALAPGYIVE-NRGQTIADFAGSVVRAPIS 100 Query: 104 KGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS- 161 +G+PI +LV G+ G ++++L G RA + IS + GG I PND VDV++ Sbjct: 101 QGEPITGRRLVQPGDAGFMAAVLTPGMRAVAVPISAETGAGGFILPNDRVDVIVSFEEET 160 Query: 162 ------ERKPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSV 213 R ++ N RV+AID + ++D+ V VG TATLELTP QA+A+ A + Sbjct: 161 EGRRGAGRAFVARTIVENARVLAIDQSFSSEADDEVAVGETATLELTPDQARAVSVAVAR 220 Query: 214 AKLSLVLRSIADLNPSS--------SEDSDVWDVQEEGKEIQIIKAG 252 +++LVLRS+ D + + E + + +I+ G Sbjct: 221 GEIALVLRSLTDNSGAPVLVSGGELPEAPSQSFQERRSSSVTLIRYG 267 >gi|167841424|ref|ZP_02468108.1| putative pilus assembly protein CpaB [Burkholderia thailandensis MSMB43] Length = 281 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 12/204 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V ++ D+ +G + PN L V +P +V G D ++ L+G + Sbjct: 29 VQTSSSAVTPVAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82 Query: 98 VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 VR + +G+P+ KL GGLS+++ G RA T+ ++ V G P ++VDV++ Sbjct: 83 VRTSLARGEPVLGTKLAPIGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142 Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211 ++ +VL I V+A+ + D+ V + TLE++P QA+ L A+ Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPDQAEKLDLAR 202 Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235 SV LSLVLR+ D + ++ + Sbjct: 203 SVGTLSLVLRNQIDKDALNTGGAT 226 >gi|296284551|ref|ZP_06862549.1| Flp pilus assembly protein CpaB [Citromicrobium bathyomarinum JL354] Length = 353 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 72/255 (28%), Positives = 119/255 (46%), Gaps = 13/255 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF-INVLISKGDLAVGM 59 M +L+ ++ + V A IA + + T VL+++ L VG Sbjct: 1 MDRKKLVLLLAALVIAAGTAFIARSMFAGASAPEVAAATGPVEPTGPRVLVAQRSLPVGT 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 ++T + + + A+P+E V D + D + L G +VR I G+P+ LV G+ Sbjct: 61 IITQDAISYQAWPQELVRDAYFIDGEADVSK--LLGTVVRYQITAGEPVTQGALVAPGDR 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 G L++ L G RA T+ ++ ++V G + P D VD++M +E +L N+RV+A Sbjct: 119 GFLAAALGPGMRAITVPVNAQTSVAGFVFPGDRVDLMMTHE-TEGVKATETILRNLRVLA 177 Query: 179 IDHNIDSDERVLVG-----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN---PSS 230 D + + ST TLE+TP A+ + AQ+V LSL LRSIAD + + Sbjct: 178 TDQSTSQNTVDGQTVVNGFSTVTLEVTPKIAEKIAVAQTVGTLSLSLRSIADNSTDLERA 237 Query: 231 SEDSDVWDVQEEGKE 245 D+ + E Sbjct: 238 LASGDIAIPDDATPE 252 >gi|197106458|ref|YP_002131835.1| pilus assembly protein CpaB [Phenylobacterium zucineum HLK1] gi|196479878|gb|ACG79406.1| pilus assembly protein CpaB [Phenylobacterium zucineum HLK1] Length = 287 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 7/227 (3%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---NVLISKGDLAVGM 59 R+M + + + + A + + + Q A VL++ L G Sbjct: 4 SRRMMYLGAAALLSSGAVFLTQQWLQGQLSQATASARAGAAPAAAEAQVLVAAQALPPGT 63 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 ++ P+ + W A+P + G++ + ++ G +VR + G P+ +V G+ Sbjct: 64 ILKPSHVRWQAWPADAPTAGYLTSAA--SGPAQIAGAVVRGELQPGQPLTTTGVVQPGDR 121 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 L+++L G RA T+++S +S V G I P D VD+V+ R + + + VL+++RV+ Sbjct: 122 SFLAAVLKPGHRAVTVNVSAASGVAGFIFPGDRVDLVLSRRIGDDRHVSETVLTDVRVVG 181 Query: 179 IDHN-IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 ID + + V+V TATLE+TP QA+ + + KLSL LRS+A Sbjct: 182 IDQRVANEKQEVVVPQTATLEVTPKQAEIVALMPELGKLSLSLRSLA 228 >gi|127511580|ref|YP_001092777.1| SAF domain-containing protein [Shewanella loihica PV-4] gi|126636875|gb|ABO22518.1| SAF domain protein [Shewanella loihica PV-4] Length = 298 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 115/281 (40%), Gaps = 25/281 (8%) Query: 1 MKLTRL----MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLA 56 MKL + + +V++ + ++ + + +T++ +V+++ L Sbjct: 1 MKLKSIDFNWVLLVIALILGGISAWATKNYFIAKEQELRDELTKDNIAMADVIVATQPLK 60 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G +++ + + + I P+ E+ G ++ P+ G P+ L Sbjct: 61 KGDIISQANMSVRQIRADTLPLDAIH----PSRFGEVAGQMLLQPMAPGRPLIETYLPGM 116 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSN 173 S +L +G+RA T+DI ++ GM+ P+DH+D+++ R + + ++L + Sbjct: 117 RVAQFSDILKEGQRAVTIDIDEINSSAGMLVPSDHIDLLLSFKEEGRNGERKRLQLLLED 176 Query: 174 IRVIAIDHNIDSD---------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 + V+A + +T TL L+ A + A+ +LR+ Sbjct: 177 VTVLATGRRSIDVNPELVDTLYDNPNAYNTVTLALSVNDAARVSLAKQKGDFVTLLRNQK 236 Query: 225 DLNPS---SSEDSDVWDVQEEGKE--IQIIKAGVIVNKDGE 260 + + S + +++ +EE E +++I G + + Sbjct: 237 ESSALEFISMHEGQLFNREEENHELAVEVITGGSGIKTSTQ 277 >gi|241662166|ref|YP_002980526.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D] gi|309780761|ref|ZP_07675502.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA] gi|240864193|gb|ACS61854.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D] gi|308920443|gb|EFP66099.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA] Length = 283 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 18/209 (8%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 + ++ D+ +G ++P ++ V +P ++ G I+D H + G +VR + +G Sbjct: 37 TKIAVAATDIDLGQRLSPEAIKLVDWPASSLPPGAINDPHALD------GRVVRASLTRG 90 Query: 106 DPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--- 161 +P+ KL GGLS+++ +GKRA T+ ++ V G P +VD+++ Sbjct: 91 EPVLDSKLTPVGTAGGLSAVIAEGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQDSRE 150 Query: 162 -------ERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSV 213 + +VL I V+A+ ++ D+ + V + TLE+TP QA+ + A+SV Sbjct: 151 AKPGADRNDQSISKIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPEQAEKIDLARSV 210 Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 LSLVLR+ D + + + +E Sbjct: 211 GNLSLVLRNQVDSQHDVTAGATKSTLLKE 239 >gi|85705149|ref|ZP_01036249.1| CpaB family protein [Roseovarius sp. 217] gi|85670471|gb|EAQ25332.1| CpaB family protein [Roseovarius sp. 217] Length = 289 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 105/261 (40%), Gaps = 13/261 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTE--EVITENPAKFINVLISKGDLAVG 58 M++ + +++ A A +A + + Q + +++ ++ + G Sbjct: 1 MRIVFGLVLMLGLGLAGFAVYMAKTYIDGYQQQLALERQQRAPNIETVDIYVANQLIKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117 +T + +AFP++++ +G + + K +PI K+ Sbjct: 61 EPLTTEAVRLIAFPKDSLPEGAFSSTEELFPSGASVVRKALRRMEKNEPILAVKVTKPGE 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---------SLSERKPTVT 168 G++S L +G RA + + ++S V G ++P D VD+ Sbjct: 121 EAGITSQLERGMRAFAIKVDVTSGVSGFLRPGDTVDIYWTGSIGAGNLRTEEDSTGEVTK 180 Query: 169 VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 ++ + +++IA+D D D +V T + +TP Q AL AQS +LSL L +D Sbjct: 181 LIDTGVKLIAVDQVADMDMTEAVVARTVAVAVTPNQVAALAQAQSTGRLSLSLVGASDDT 240 Query: 228 PSSSEDSDVWDVQEEGKEIQI 248 + S + D + + + Sbjct: 241 VAQSIEVDQRRLLGLTAQAVV 261 >gi|51245388|ref|YP_065272.1| hypothetical protein DP1536 [Desulfotalea psychrophila LSv54] gi|50876425|emb|CAG36265.1| hypothetical protein DP1536 [Desulfotalea psychrophila LSv54] Length = 285 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 106/245 (43%), Gaps = 15/245 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + RL +V++ V A + + +S +V E+ + ++ ++ D++ G + Sbjct: 3 NIPRLTFLVIAVVIAFSVSFVVYKKMSTPNVVMEQ---KPGQATTDIAVAVKDMSRGSKI 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NG 119 ++ + +E + G D ++++ G +V P+ +PI L + G Sbjct: 60 GSEDVQMATYLQETLPSGHFTD------LEQVVGRIVLSPLTTTEPILNSDLAPQDLTKG 113 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVI 177 GL++++ KRA + + V G + P VDV++ + R VL NI V+ Sbjct: 114 GLAAVITPTKRAMAIKVDNVIGVAGFLHPGHLVDVLVSIEKPGDTRSQITKTVLQNILVL 173 Query: 178 AIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 ++ +D++V + TLE+ + + L A + ++ L LR +D+ P + Sbjct: 174 SVGTLAQESADKKVHKVTVVTLEVDLEEGEKLALAVNEGRIQLALRGYSDVEPVLTRGIT 233 Query: 236 VWDVQ 240 + Sbjct: 234 KTSLL 238 >gi|308050060|ref|YP_003913626.1| Flp pilus assembly protein CpaB [Ferrimonas balearica DSM 9799] gi|307632250|gb|ADN76552.1| Flp pilus assembly protein CpaB [Ferrimonas balearica DSM 9799] Length = 288 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 113/248 (45%), Gaps = 17/248 (6%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + L +++S F + A ++A + + + V+ + G ++ Sbjct: 1 MRSLFFVLISIGFGIGAVLLAQNWLKQGQPSDIDDNRQP------VMTMAISVPSGTIIQ 54 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-L 121 L + P V D + +++ G++ + P+++GD + +KLV +G G L Sbjct: 55 EKHLVLKSVPPGLVPDEVLSKP------EQVVGMVAKFPLVEGDFLSRQKLVPKGEGSVL 108 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIRVIA 178 +SL+ RA T+ ++ V G + P + VDV++ R ++ VVLSN++V+A Sbjct: 109 ASLIAPNMRAVTIRVNDVVGVAGFLLPGNRVDVLVTLAKRRSADETAQTEVVLSNLKVLA 168 Query: 179 IDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 +D + D + ++ TLE+T QA+ L++A+S + L LR+ D + + Sbjct: 169 VDQRANQDSNQPVLVRAVTLEVTLEQAEELMSARSRGNIQLALRNPNDDVEVAVASDEAA 228 Query: 238 DVQEEGKE 245 + E Sbjct: 229 QTAQVAPE 236 >gi|86360579|ref|YP_472467.1| putative cpaB pilus assembly protein [Rhizobium etli CFN 42] gi|86284681|gb|ABC93740.1| putative cpaB pilus assembly protein [Rhizobium etli CFN 42] Length = 304 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 101/248 (40%), Gaps = 8/248 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++ +V++ V A A +S + + + V ++ + G Sbjct: 1 MRSSTILSLVIAFVLAAAAVFGMRAYLSDQKARLLAMNGVKTEERTLV-VAATPMRFGDR 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + L + +P G + + I G+P+ K+ G Sbjct: 60 IRSENLRAIPWPSNETPTGSFVSIDLVVG-NDAQPRYAMAAIDPGEPVLSSKITGAGERA 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175 LS+ L +G +A ++ ++ V G ++P+D VDV++ + V V+L ++ Sbjct: 119 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRGPAGNDQTFVDVLLQGVK 178 Query: 176 VIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+A+D D + V T T E+T +A+ L S+ LSL LR++A + + Sbjct: 179 VLAVDQTADERKDEPSVVKTVTFEVTTDEAQRLTLGSSIGTLSLALRNVASSSVEQTRPI 238 Query: 235 DVWDVQEE 242 V D+ Sbjct: 239 TVADLGGG 246 >gi|83312839|ref|YP_423103.1| Flp pilus assembly protein CpaB [Magnetospirillum magneticum AMB-1] gi|82947680|dbj|BAE52544.1| Flp pilus assembly protein CpaB [Magnetospirillum magneticum AMB-1] Length = 300 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 117/272 (43%), Gaps = 24/272 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ +VV+ + A ++A + + + E + +LI D+ G Sbjct: 1 MRP-IVIIVVVAALAAGGTAMLAKSWLDRQEARRAKAADEPA--TVEILIINRDVPSGAA 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + L + ++P+ V + ++ G++ R P+ +G+P+ G Sbjct: 58 LAGDDLRYESWPKAAVSPRLVTRKPGEDSKAAFVGMIARRPLAEGEPVSAATTFRPEASG 117 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------- 165 ++ LL G RA ++ I+ +AV G + P D VDVV+ + + + Sbjct: 118 VMAGLLAPGMRAISIAITNPTAVSGFVTPGDRVDVVLASDIKKSEEGINAEAGSGLLLRY 177 Query: 166 TVTVVLSNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 VL+++RV+AID I D + G TATLE+TP QA+ L A + L L LR Sbjct: 178 GAETVLADLRVLAIDQQITRGRDGAPIQGKTATLEVTPKQAEILTVAGMMGTLQLSLRPQ 237 Query: 224 ----ADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 P+ E D E GK +Q + Sbjct: 238 RGEDGAAKPAMGEVLDFTADLEAGKVLQAVVG 269 >gi|307294423|ref|ZP_07574267.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] gi|306880574|gb|EFN11791.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] Length = 307 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 L+ + ++ + L A IA +S E + V+++ L G VT Sbjct: 4 RRSLIVLGLAILLGLAAVFIANSYLSS-----AEKAPQADGGMAKVVVATVSLPFGSAVT 58 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121 + V +P +V G D Q ++ G +V I G+PI KL G + Sbjct: 59 AEKIRTVDWPANSVPPGAFRDPIQLTSLG--KGRVVLRQIEPGEPILASKLSGEGGRATM 116 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE----RKPTVTVVLSNIRVI 177 S++L RA + +S +A GG + P D VDV + R+L++ + V+L RVI Sbjct: 117 SAVLAPEMRAVAVRVSDVAAAGGFVLPGDTVDVFVTRTLTDPVAGSQQITDVLLQGTRVI 176 Query: 178 AIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 AID N D+ + VG TATLE+ + A+ LV AQ V +L+LVLR++ D + + + Sbjct: 177 AIDQNANDTSKDPAVGKTATLEVNQVDAQKLVLAQQVGQLTLVLRNLTDKPNPAVQTVGI 236 Query: 237 WDVQEE 242 D+++ Sbjct: 237 EDLRDG 242 >gi|21673268|ref|NP_661333.1| hypothetical protein CT0429 [Chlorobium tepidum TLS] gi|21646356|gb|AAM71675.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 278 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 114/246 (46%), Gaps = 19/246 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + R + +V++ + IA R +S V+I + +A G + Sbjct: 1 MKRPIFVVIALTLGAMTAFIAARWMSGPKASGPS-----------VVIVEQPIAAGRPIL 49 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121 ++ +++ V ++ G + VP++ G+P+ KL G GGL Sbjct: 50 AGQIKAISWSGSVVPQEAFSRTA------DVVGRIALVPMIPGEPVLPGKLAPIGATGGL 103 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 SS++P GKRA ++ ++ V G P +VD+++ +P +VLS ++V+A++ Sbjct: 104 SSIIPAGKRAISVRVNDVVGVAGFALPGSYVDILVSGRDVSGQPFSRIVLSKVKVLAVEQ 163 Query: 182 NI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 + ++ V + TLEL+P +++ L A+++ LSLVLR+ D +S + DV Sbjct: 164 DTVAEKDKPKVVNAVTLELSPQESEKLDLARNIGALSLVLRNELDTTVVNSVGVRLSDVV 223 Query: 241 EEGKEI 246 + + Sbjct: 224 YPQRGV 229 >gi|27378603|ref|NP_770132.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27351751|dbj|BAC48757.1| blr3492 [Bradyrhizobium japonicum USDA 110] Length = 329 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 114/265 (43%), Gaps = 16/265 (6%) Query: 1 MKLTRLMGIVVSGVFALVA-GIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVG 58 M + I++ + A A G+IA + P V P + ++ L+ G Sbjct: 13 MSSALRLSIIIVLLLATAAFGLIAYNMNLPKQVPVAVTEQGPAPPSTVGYFVAARPLSRG 72 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + + E + G I + P+A L G LVR + G PI L+ ++ + Sbjct: 73 TLARDEDFAVRSALPERLPAGAILE--TPDAKAGLTGSLVRKFVEAGSPITLQDVLRPRD 130 Query: 119 -GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSN 173 G L+S+L RA ++ + S V G+I+P DHVDV++ ++ R+ VVL N Sbjct: 131 RGFLASVLAPDSRAISIKVDEESGVSGLIRPGDHVDVLLTQVFEKADPARRALSEVVLGN 190 Query: 174 IRVIAIDHNIDSDERV------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL- 226 +RVIAID I R T +LEL P Q K + A+ + +SL +R+ + Sbjct: 191 VRVIAIDQEIVQGGRTVSSLAGKQAQTVSLELAPDQVKKITVAKQIGTISLAVRAAVEQW 250 Query: 227 NPSSSEDSDVWDVQEEGKEIQIIKA 251 + + + DV E + Sbjct: 251 DTADTGAMSSCDVSPEIARQNAVAG 275 >gi|194288837|ref|YP_002004744.1| pilus assembly transmembrane protein [Cupriavidus taiwanensis LMG 19424] gi|193222672|emb|CAQ68675.1| PILUS ASSEMBLY TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 279 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 121/252 (48%), Gaps = 23/252 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK TR ++ ++++ V + A + A R + + + + + DL +G Sbjct: 1 MKNTRAILMLLIALVAGVAAVVSASRWLVQQSSSSVKQVVV----------AANDLNLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 + L V++P +V G D ++ L+G +VR + +G+PI KL Sbjct: 51 PLNGAQLRMVSWPAGSVPPGAFTD------LKALEGRVVRTSLQRGEPILDAKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNI 174 GGLS+++ GKRA T+ ++ V G P ++VDV++ S+ +VL I Sbjct: 105 GGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEEAKSSQNSSISKIVLEKI 164 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + DE + V + TLE+TP QA+ L A+SV LSLVLR+ D+ S+ Sbjct: 165 LVLAVAQQVSRDETQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQMDVADISTGG 224 Query: 234 SDVWDVQEEGKE 245 + + + E Sbjct: 225 ATKGTLLGKAPE 236 >gi|13475418|ref|NP_106982.1| pilus assembly protein [Mesorhizobium loti MAFF303099] gi|14026170|dbj|BAB52768.1| pilus assembly protein [Mesorhizobium loti MAFF303099] Length = 354 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 12/254 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ IV++GVF ++A ++A ++ + N + V+++ L G Sbjct: 1 MRANTVIMIVLAGVFGVLAVVLANIWLANQRSAIAQT---NDIQRDTVVVAAVALKFGDT 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK---GDPIRLEKLVDRG 117 ++ + L VA+P V G + L G + + +P+ K+ G Sbjct: 58 LSADKLREVAWPAGAVPAGAFKTTEELLTKDVLPGAAPKQALQAIGVNEPVLATKITGPG 117 Query: 118 N-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLS 172 LS++L +G +A ++ ++ V G + P D VDV++ R + V V+L Sbjct: 118 QRATLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDVLLTRTVRSDDGADQSFVDVLLQ 177 Query: 173 NIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +RV+A+D D + V + TLE + A+ L A +LSL LR A ++ Sbjct: 178 GMRVLAVDQVADESKDSPTVVKSVTLEASTKDAQKLTLAAGAGQLSLALRQAAASKGETT 237 Query: 232 EDSDVWDVQEEGKE 245 E + D+ E Sbjct: 238 ERVTLSDLTGEMPA 251 >gi|84687278|ref|ZP_01015158.1| CpaB family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664711|gb|EAQ11195.1| CpaB family protein [Rhodobacterales bacterium HTCC2654] Length = 274 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 97/233 (41%), Gaps = 8/233 (3%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 + A A +A + + E + + + K +A G +T + Sbjct: 1 MGVGLAGFAVYMARDYIGNYQAALEQERAARAQMVQTAEIYVVKESVAYGDRITDENIRL 60 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPK 127 FP + + +G + E V + K + + K+ + G + G+++ L Sbjct: 61 TRFPVDAIPEGAFKTEEELFPQGEKRYRTVLRAMEKDEALLAVKVTEAGADAGVAARLAS 120 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIRVIAIDHNI 183 G RA + + ++S V G ++P D VD+ S + ++ +NIR+IAID Sbjct: 121 GMRAFAIRVDVASGVSGFLRPGDKVDIYWTGRGSSDSVTSQEVTKLIQTNIRIIAIDQMA 180 Query: 184 DSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 D+D V T T+E TP Q AL AQ+ +++L L D + + + D Sbjct: 181 DTDRTAPTVARTVTIEATPEQVAALAQAQATGRMALSLVGAQDDTVAEAVEID 233 >gi|300692330|ref|YP_003753325.1| pilus assembly (cpaB), transmembrane protein [Ralstonia solanacearum PSI07] gi|299079390|emb|CBJ52061.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia solanacearum PSI07] Length = 284 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 106/217 (48%), Gaps = 19/217 (8%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 ++ + V ++ D+ +G ++P +++ V +P ++ G + D H + G +V Sbjct: 30 QQSASGITKVAVASADVELGQRLSPEMVKLVDWPAASLPPGVVTDAHALD------GRVV 83 Query: 99 RVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-- 155 + + +G+P+ KL GGLS+++ GKRA T+ ++ V G P +VDV+ Sbjct: 84 KASLTRGEPVLESKLTPVGTAGGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDVIVN 143 Query: 156 ---------MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAK 205 + + +VL I V+A+ + D+ + V + TLE+TP QA+ Sbjct: 144 TMEDEKQAKAAGNDQKEHSISKIVLEKILVLAVAQEVGRDDTKPKVVNAVTLEVTPDQAE 203 Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 L A+SV LSLVLR+ AD + + + + +E Sbjct: 204 KLDLARSVGTLSLVLRNQADPRAADTTGATKSTLLKE 240 >gi|16127176|ref|NP_421740.1| pilus assembly protein CpaB [Caulobacter crescentus CB15] gi|221235977|ref|YP_002518414.1| pilus assembly protein CpaB [Caulobacter crescentus NA1000] gi|7208424|gb|AAF40191.1|AF229646_3 CpaB [Caulobacter crescentus CB15] gi|13424572|gb|AAK24908.1| pilus assembly protein CpaB [Caulobacter crescentus CB15] gi|220965150|gb|ACL96506.1| pilus assembly protein CpaB [Caulobacter crescentus NA1000] Length = 297 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 79/294 (26%), Positives = 134/294 (45%), Gaps = 42/294 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVI------TENPAKFINVLISKGD 54 M RL+ ++++ V A+ ++ R + + ++ VL++K D Sbjct: 1 MSPVRLLIVLIAAVSAIGLAVVLQRALGGAPAKPTGLVEAPGGPAAPGKPMTQVLVAKRD 60 Query: 55 LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP------------------------NAM 90 L VG + + W A+P +++ FI + P + Sbjct: 61 LPVGTRLVATDVGWQAWPSDSINAAFITNGSAPVTPDGKVEAAKAVVAATADQMIGGDPA 120 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPN 149 + ++G +VR PIL G+PI K+V G GG LS +L GKRA ++ ++ +AVGG I P Sbjct: 121 KIVEGAIVRDPILIGEPITPRKIVRGGEGGYLSVVLTPGKRAMSVPVTSDTAVGGFILPG 180 Query: 150 DHVDVVMVRSLSERK------PTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTP 201 D VDV+ R VL NIRV+A+D + D + +V +TATLE+ P Sbjct: 181 DRVDVLSTRDAPAAGDQGGKVMIAETVLQNIRVLALDQATAAEKDAKSIVAATATLEVGP 240 Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIV 255 ++A+AL A++ ++L LR+ D+ S V + ++I + G Sbjct: 241 VEAEALARAKAGGPITLALRAYTDMGGPSGV---THAVAGDDSTVRINRGGQTT 291 >gi|94309593|ref|YP_582803.1| Flp pilus assembly CpaB [Cupriavidus metallidurans CH34] gi|93353445|gb|ABF07534.1| Flp pilus assembly CpaB precursor [Cupriavidus metallidurans CH34] Length = 281 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 103/200 (51%), Gaps = 12/200 (6%) Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + DL +G + + L+ V++P +V G +D + LDG +VR + +G+PI Sbjct: 42 AANDLDLGQPLNGSQLKLVSWPAGSVPPGAFEDP------KTLDGRVVRTSLQRGEPIID 95 Query: 111 EKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKP 165 KL GGLS+++ GKRA T+ ++ V G P ++VDV++ + + Sbjct: 96 AKLAPVGTKGGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEDTKSAQNGS 155 Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +VL I V+A+ + D+ + V + TLE++P QA+ L A+SV LSLVLR+ Sbjct: 156 ISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVSPDQAEKLDVARSVGTLSLVLRNQM 215 Query: 225 DLNPSSSEDSDVWDVQEEGK 244 D+ ++ + + + + Sbjct: 216 DVADINTGGATKHTLLGKAE 235 >gi|167574002|ref|ZP_02366876.1| putative pilus assembly protein CpaB [Burkholderia oklahomensis C6786] Length = 282 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 12/204 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V ++ D+ +G + PN L V +P +V G DV + L+G + Sbjct: 29 VQTSSSAVTPVAVAAIDVNLGEPLVPNQLRVVNWPTASVPPGAFTDV------KSLEGRV 82 Query: 98 VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 VR + +G+P+ KL GGLS+++ G RA T+ ++ V G P ++VDV++ Sbjct: 83 VRTSLARGEPVLGSKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142 Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211 ++ +VL I V+A+ + D+ V + TLE+TP QA+ L A+ Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLAR 202 Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235 SV LSLVLR+ D + ++ + Sbjct: 203 SVGTLSLVLRNQVDKDALNTGGAT 226 >gi|323493504|ref|ZP_08098626.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] gi|323312327|gb|EGA65469.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] Length = 280 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 108/268 (40%), Gaps = 25/268 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RLM + + +++ + L+ Q + F VL++K + +G Sbjct: 1 MTAKRLMLLSL-----VLSAVGISILLLSQSEQKNDQQQAAAETFKRVLVAKQKVDIGQP 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 T N+ EW ++ + + + ++Q+ + IL G + G Sbjct: 56 YTLNMFEWKQVSQQELDNYLDYISREAFSVQQFTPGIAHSEILAGQVMSAGDFSTPKGGV 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVV 170 L+ + G RA ++ + +A G ++P D VD++++ S E VT + Sbjct: 116 SLAFKVRNGYRAISVPVDSVTANSGFVQPGDKVDILLLGSEVEELKKYDNKVSGLYVTTI 175 Query: 171 LSNIRVIAIDHNIDSD--ERVLVG--------STATLELTPMQAKALVAAQSVAKLSLVL 220 ++RV+A + D+D ++ S+ +LE+ P QA +V A + KL+L L Sbjct: 176 AKDVRVLAFNQYSDADNFQKKRSAYGADLPDNSSVSLEVNPEQATQIVLANQIGKLTLSL 235 Query: 221 RSIADLNPSSSEDSDVWDVQEEGKEIQI 248 R + + V Q + Q+ Sbjct: 236 RGAGEDDSDDQSIYTVKSTQINPESKQV 263 >gi|113866745|ref|YP_725234.1| flp pilus assembly protein [Ralstonia eutropha H16] gi|113525521|emb|CAJ91866.1| flp pilus assembly protein [Ralstonia eutropha H16] Length = 280 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 23/252 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK TR ++ ++++ V + A + A R + + + + DL +G Sbjct: 1 MKNTRAILMLLIALVAGVAAVVSASRWLVQQSSSSVRQVVV----------AANDLNLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 + + L V++P +V G +D M+ L+G +VR + +G+P+ KL Sbjct: 51 PLNGSQLRMVSWPTGSVPPGAFED------MKALEGRVVRTSLQRGEPVLDAKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNI 174 GGLS+++ GKRA T+ ++ V G P ++VDV++ + + +VL I Sbjct: 105 GGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEEAKTTQSGSISKIVLEKI 164 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D+ S+ Sbjct: 165 LVLAVAQQVSRDDTQPKVVNAVTLEVTPEQAEKLDVARSVGTLSLVLRNQLDVADISTGG 224 Query: 234 SDVWDVQEEGKE 245 + + + E Sbjct: 225 ATKGTLLGKTPE 236 >gi|118581114|ref|YP_902364.1| SAF domain-containing protein [Pelobacter propionicus DSM 2379] gi|118503824|gb|ABL00307.1| SAF domain protein [Pelobacter propionicus DSM 2379] Length = 291 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 15/220 (6%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 +++ K ++++ D+ VG + L+ +A+P ++ G D + L Sbjct: 30 SKKSKETEAGKGKGIVVASADIPVGSKLNTTHLKMMAWPATSIPPGSFTD------TKAL 83 Query: 94 DGVLVRVPILKGDPIRLEKLVD----RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 + PI G+P+ KL+ G G ++ ++P G RA T+ ++ + V G + P+ Sbjct: 84 IDRISIRPIGPGEPLTEAKLMPRDGAPGAGIMTYIIPDGHRAVTVAVNEVAGVAGFLSPH 143 Query: 150 DHVDVVMV----RSLSERKPTVTVVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQA 204 + VDVV+ S +VL N+ ++A + D + +V T T++LTP A Sbjct: 144 NKVDVVLTTIPPGSNDPNATISKIVLQNVPILATGQITEQKDGKPVVVPTVTIDLTPEDA 203 Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 + LV A S L ++LR I D S + + V + Sbjct: 204 EKLVVASSKGSLQMLLRGIRDSALVESRGATIAKVLGAVR 243 >gi|13471033|ref|NP_102602.1| hypothetical protein mll0900 [Mesorhizobium loti MAFF303099] gi|14021777|dbj|BAB48388.1| mll0900 [Mesorhizobium loti MAFF303099] Length = 308 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 104/247 (42%), Gaps = 25/247 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN-------VLISKG 53 M+ + I ++ VF ++ A V E T + A + ++++K Sbjct: 1 MRGKAITMIGIAAVFGAISIFAADFWVKSQAKADAEEKTASIAAPVPPRIEFKTIVVAKA 60 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 L G + L + +P++++ G + +V PI +P+ L KL Sbjct: 61 PLRYGQELDRAKLIEIPWPQDSLPQGAFATIDGLLGEG---NRIVLSPIEVNEPVLLTKL 117 Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----------- 161 LS++L G RA T+ + VGG + P D VDVV+ R Sbjct: 118 SGPNGRATLSNMLTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQG 177 Query: 162 --ERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 T +V+++ +V+++ D + + ++ T+E+T A+ + A++V LSL Sbjct: 178 AAGSTVTSEIVVADAKVLSVGQGADERQTTPQITNSVTIEVTTEGAQKVALARTVGTLSL 237 Query: 219 VLRSIAD 225 LRS ++ Sbjct: 238 SLRSASE 244 >gi|322419945|ref|YP_004199168.1| Flp pilus assembly protein CpaB [Geobacter sp. M18] gi|320126332|gb|ADW13892.1| Flp pilus assembly protein CpaB [Geobacter sp. M18] Length = 308 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 110/218 (50%), Gaps = 13/218 (5%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 +E+ + ++++ D+ +G ++ L+ ++P++++ G DV + L Sbjct: 30 QKEMDMTKAVQPQTLVVAAADIPIGGTISEPQLKTTSWPKDSIPPGSAADV------KSL 83 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGN----GGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 G + PI GD + +KL + G ++ ++P G RA T+ ++ + V G I PN Sbjct: 84 VGRVAIRPISNGDAVTEQKLKPKAGAAGSGFMTYIVPLGHRATTVAVNEVAGVAGFITPN 143 Query: 150 DHVDVVMVR--SLSERKPTVTVVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKA 206 D +DVV+ S+++ ++L N+ V+A + + + +V T TL+LTP A+ Sbjct: 144 DRIDVVLTTQLPGSQKENISKIILQNVPVLATGQITEQKEGKPVVVPTVTLDLTPEDAEK 203 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 LV A S L L+LR+IAD P +++ + + V Sbjct: 204 LVLAGSKGSLQLLLRNIADSAPLNAKGATIAKVLAGTP 241 >gi|83717368|ref|YP_440455.1| pilus assembly protein [Burkholderia thailandensis E264] gi|167617228|ref|ZP_02385859.1| pilus assembly protein [Burkholderia thailandensis Bt4] gi|257141103|ref|ZP_05589365.1| pilus assembly protein [Burkholderia thailandensis E264] gi|83651193|gb|ABC35257.1| pilus assembly protein [Burkholderia thailandensis E264] Length = 279 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 59/211 (27%), Positives = 105/211 (49%), Gaps = 12/211 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V ++ D+ +G + PN L V +P +V G D ++ L+G + Sbjct: 29 VQTSSSAVTPVAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKSLEGRV 82 Query: 98 VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 VR + +G+P+ KL GGLS+++ G RA T+ ++ V G P ++VDV++ Sbjct: 83 VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGDRAITVRVNDVVGVAGFALPGNYVDVIV 142 Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211 ++ +VL I V+A+ + D+ V + TLE+TP QA+ L A+ Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLAR 202 Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 SV LSLVLR+ D + ++E + + + Sbjct: 203 SVGTLSLVLRNQVDKSALTTEGATKRTLLGQ 233 >gi|149915643|ref|ZP_01904169.1| CpaB family protein [Roseobacter sp. AzwK-3b] gi|149810535|gb|EDM70378.1| CpaB family protein [Roseobacter sp. AzwK-3b] Length = 290 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 106/258 (41%), Gaps = 14/258 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTE--EVITENPAKFINVLISKGDLAVG 58 M+L + +V+ A A +A + + Q + + VL++K L G Sbjct: 1 MRLVFGLVLVLGLGLAGFAVYMAKSYIQGYQNQLALERAQRAPQIETVEVLVAKTPLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-G 117 + P+ + V FP++ + +G + E + VR + + I K+ Sbjct: 61 QKLKPDAVRLVKFPKDALPEGVFMTMDALFPKGEQEPRAVRRAMEVNEAIMAVKVTAPGE 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----------KPTV 167 + G+SS L +G RA + + ++S V G ++P D VDV + Sbjct: 121 DAGISSQLAQGMRAFAIKVDVASGVSGFLRPGDRVDVYWTGQVRGGSDVRTEGNSMGDVT 180 Query: 168 TVVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 ++ + +++IA+D D + ++ T T+ P Q AL AQ+ +LSL L + Sbjct: 181 KLIETGVQLIAVDQISDENTTQAIIARTVTVAARPQQVAALAQAQATGRLSLSLVGTDEE 240 Query: 227 NPSSSEDSDVWDVQEEGK 244 + + + D + + Sbjct: 241 SVAEVIEVDQNRLLGLSR 258 >gi|167579113|ref|ZP_02371987.1| pilus assembly protein [Burkholderia thailandensis TXDOH] Length = 279 Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 104/210 (49%), Gaps = 12/210 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V ++ D+ +G + PN L V +P +V G D ++ L+G + Sbjct: 29 VQTSSSAVTPVAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKSLEGRV 82 Query: 98 VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 VR + +G+P+ KL GGLS+++ G RA T+ ++ V G P ++VDV++ Sbjct: 83 VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGDRAITVRVNDVVGVAGFALPGNYVDVIV 142 Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211 ++ +VL I V+A+ + D+ V + TLE+TP QA+ L A+ Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLAR 202 Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 SV LSLVLR+ D + ++E + + Sbjct: 203 SVGTLSLVLRNQVDKSALTTEGATKRTLLG 232 >gi|319782174|ref|YP_004141650.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168062|gb|ADV11600.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 344 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 107/256 (41%), Gaps = 11/256 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ L+ IV++GVF ++A ++ ++ + + V+++ L G Sbjct: 1 MRANTLIMIVLAGVFGVLAVVLVNIWLAGQRSAMAQTGV---VQGSTVVVAAMPLKFGDA 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 ++ + L VA+P V G A I +PI K+ G Sbjct: 58 LSADKLREVAWPAGAVPAGAFKSTKDLLAGDGA--KQALQSIGVNEPILATKITGPGQRA 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175 LS++L +G +A ++ ++ V G + P D VD+++ K V V+L +++ Sbjct: 116 TLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDILLTRTARGDDGADKSFVDVLLQSMK 175 Query: 176 VIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+AID D + V + TLE + A+ L A +LSL LR A ++E Sbjct: 176 VLAIDQVADESKDSPTVVKSVTLEASTRDAQKLTLAAGAGQLSLALRQAAASKGETTERV 235 Query: 235 DVWDVQEEGKEIQIIK 250 + D+ E + Sbjct: 236 TLSDLTGETPADVAAR 251 >gi|170725114|ref|YP_001759140.1| Flp pilus assembly protein CpaB [Shewanella woodyi ATCC 51908] gi|169810461|gb|ACA85045.1| Flp pilus assembly protein CpaB [Shewanella woodyi ATCC 51908] Length = 298 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 100/273 (36%), Gaps = 21/273 (7%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 + ++++ V +A + ++++ K V+++ +L G +++ Sbjct: 10 WVLLIIAIVLGSIAAWATKNYFITKEQELIAELSKDNIKMAQVVVATQELRKGDIISEAN 69 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 + + + I P ++ G ++ P+ G P+ L S +L Sbjct: 70 MSVRKIQADTLPLDAIH----PKDFNQIVGQMLLEPMSPGRPLMGTYLPGHKAEQFSDIL 125 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSNIRVIAIDHN 182 +G+RA T++I ++ GM+ P+DH+D+++ ++L N+ V+A Sbjct: 126 KEGQRAVTINIDELNSTAGMLVPSDHIDLLLSFDEESGDIERKKLQLLLENVTVLATGRQ 185 Query: 183 IDSD---------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 + +T TL L+ A + A+ K LR+ + Sbjct: 186 SVDVNPELADTLYDNPNAYNTVTLALSVHDAARVTLAKEKGKFVTFLRNQTESLALDFIS 245 Query: 234 SDVWDVQEEGK-----EIQIIKAGVIVNKDGEG 261 + + E+++I G + + Sbjct: 246 LHEQQLFGQADDLLNQEVEMIVGGSGMKTTVQA 278 >gi|37680195|ref|NP_934804.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016] gi|37198942|dbj|BAC94775.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016] Length = 279 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 97/271 (35%), Gaps = 25/271 (9%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 + V ++ + + Q VL + LA G + L Sbjct: 5 YMAVFAALSIALFLAGFVWLDTSQAQPPSQPLSTVEHKAKVLTTNRALAKGSFIERENLV 64 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLP 126 W + ++++ G + I + E L+ LS+L+ Sbjct: 65 WKEVSLAERESLGEVFLQPVFELEQIAGSVAVQFIPADSVLSPEMLLRPEQSDFLSALVK 124 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----------PTVTVVLSNIRV 176 G RA ++++ +A G+++P + VDV++ + V VL NI + Sbjct: 125 PGMRAISIELDPMAAGLGLLRPGNKVDVLLTSQSEIDQDANGTPIYNNMAVETVLQNIHL 184 Query: 177 IAIDHNIDSDERVLV------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 +AI + ++ ++ T E++ A+ LV A + +LSLVLR D + Sbjct: 185 LAIGNQYSPHQKPEKSAKSYDPTSVTFEVSLQDAEKLVLASKLGELSLVLRGNNDQTEVA 244 Query: 231 SED--------SDVWDVQEEGKEIQIIKAGV 253 ++ Q+ + + +I+ V Sbjct: 245 NKPLKWAKDISGAYDLEQQPTQSVTVIRGNV 275 >gi|167725246|ref|ZP_02408482.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei DM98] Length = 245 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 12/204 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V ++ D+++G + PN L V +P +V G D ++ L+G + Sbjct: 29 VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82 Query: 98 VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 VR + +G+P+ KL GGLS+++ G RA T+ ++ V G P ++VDV++ Sbjct: 83 VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142 Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211 ++ +VL I V+A+ + D+ V + TLE++P QA+ L A+ Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202 Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235 SV LSLVLR+ D + S+ + Sbjct: 203 SVGTLSLVLRNQVDKDALSTGGAT 226 >gi|94497253|ref|ZP_01303825.1| Flp pilus assembly CpaB [Sphingomonas sp. SKA58] gi|94423358|gb|EAT08387.1| Flp pilus assembly CpaB [Sphingomonas sp. SKA58] Length = 337 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 64/260 (24%), Positives = 118/260 (45%), Gaps = 17/260 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVGM 59 M +++ +V + + A+ ++A ++S + A +VL++ L VG Sbjct: 1 MDAKKIVLLVGALIIAVTTALLARNMLSSSSTPSVNAANMPVEADQPHVLVAVKALPVGT 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 ++ + +P++ V + A L G ++R I G P+ LV G+ Sbjct: 61 ILDAESFRFQPWPKDLVEQAYYLRGQADPA--RLAGSVIRTAITAGQPLTQGSLVKPGDR 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVLSN 173 G L++ L G RA T+ +S ++V G + P D +D+V+ +S++ +L N Sbjct: 119 GFLAAALAPGMRAVTVPVSAQTSVAGFVFPGDRIDLVLTQSVAGGGDGEPLKVSETILRN 178 Query: 174 IRVIAIDHNIDSDERVLVG-----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 +RV+A D +D+ S TLE+TP A+ + AQ+V LS+ LRS+AD Sbjct: 179 LRVLATDQRMDALGPDGKPVVQTYSNVTLEVTPKIAEKIAVAQTVGSLSMSLRSMADTPS 238 Query: 229 ---SSSEDSDVWDVQEEGKE 245 ++ +DV + Sbjct: 239 DLDAAIAGADVDLPEGASPA 258 >gi|167566933|ref|ZP_02359849.1| putative pilus assembly protein CpaB [Burkholderia oklahomensis EO147] Length = 274 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 12/204 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V ++ D+ +G + PN L V +P +V G DV + L+G + Sbjct: 21 VQTSSSAVTPVAVAAIDVNLGEPLVPNQLRVVNWPTASVPPGAFTDV------KSLEGRV 74 Query: 98 VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 VR + +G+P+ KL GGLS+++ G RA T+ ++ V G P ++VDV++ Sbjct: 75 VRTSLARGEPVLGSKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 134 Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211 ++ +VL I V+A+ + D+ V + TLE+TP QA+ L A+ Sbjct: 135 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLAR 194 Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235 SV LSLVLR+ D + ++ + Sbjct: 195 SVGTLSLVLRNQVDKDALNTGGAT 218 >gi|167851181|ref|ZP_02476689.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei B7210] Length = 253 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 12/204 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V ++ D+++G + PN L V +P +V G D ++ L+G + Sbjct: 29 VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82 Query: 98 VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 VR + +G+P+ KL GGLS+++ G RA T+ ++ V G P ++VDV++ Sbjct: 83 VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142 Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211 ++ +VL I V+A+ + D+ V + TLE++P QA+ L A+ Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202 Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235 SV LSLVLR+ D + S+ + Sbjct: 203 SVGTLSLVLRNQVDKDTLSTGGAT 226 >gi|167821373|ref|ZP_02453053.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 91] Length = 251 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 12/204 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V ++ D+++G + PN L V +P +V G D ++ L+G + Sbjct: 29 VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82 Query: 98 VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 VR + +G+P+ KL GGLS+++ G RA T+ ++ V G P ++VDV++ Sbjct: 83 VRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142 Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211 ++ +VL I V+A+ + D+ V + TLE++P QA+ L A+ Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202 Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235 SV LSLVLR+ D + S+ + Sbjct: 203 SVGTLSLVLRNQVDKDALSTGGAT 226 >gi|149178506|ref|ZP_01857094.1| pilus assembly transmembrane protein [Planctomyces maris DSM 8797] gi|148842621|gb|EDL56996.1| pilus assembly transmembrane protein [Planctomyces maris DSM 8797] Length = 324 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 91/264 (34%), Gaps = 20/264 (7%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL-ISKGDLAVGMVVTPNILEW 68 + + + L A + + VL I+ DL G ++ + + Sbjct: 5 IFAILLGLGAAYTVRQFLHEKPKPFVLAEDPPAGPKKIVLPIASRDLVPGQKLSLDDISL 64 Query: 69 VAFPEENVFDGFIDDVH---QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSL 124 + E + + D + Q + G ++ I G P L G G G+S + Sbjct: 65 LQISPELLSKRYDADSEGKQRIMMTQYIAGRTLKTAIKAGQPFHTIDLFANGMGPGISEI 124 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI 183 L G RA T+ I V G +P VDV+ ++ P T +L +RV+A+ Sbjct: 125 LEPGNRAVTVAIHKIGNVAGFSRPGTIVDVLFRSKETDGIPETTITLLEKVRVLAVGDQA 184 Query: 184 DSDERVLVGS----TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 +V G TLE++P Q K L + LSL LR + S + Sbjct: 185 VPGHKVGEGGGMDHPVTLEVSPEQGKVLKVVEDHGILSLALRHPDENTEVVSAGRASDRL 244 Query: 240 QEEG----------KEIQIIKAGV 253 + I + G Sbjct: 245 TLSNILGFMPNQRVSSMDIYRGGS 268 >gi|23016178|ref|ZP_00055937.1| COG3745: Flp pilus assembly protein CpaB [Magnetospirillum magnetotacticum MS-1] Length = 296 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 72/282 (25%), Positives = 117/282 (41%), Gaps = 32/282 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 ++ + A G++A + + + + VL+ D+ G ++ + L + + Sbjct: 1 MASLAAGGTGMLANAWLDRQESRHAKADDA---PVVEVLVINRDVPSGAALSVDDLRYES 57 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGK 129 +P + +A G++ R + +G+P+ + G L+ LL GK Sbjct: 58 WPRSAATARLVVRRPGEDAKAAFVGMIARRALTEGEPVSAATTFKPDSSGVLAGLLGPGK 117 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----------------------V 167 RA ++ I+ +AV G I P D VDVVM+ L + + Sbjct: 118 RAISITITNPTAVSGFITPGDRVDVVMLTDLKKIEDAQGRESKQEEGRFGGETLLVRFGA 177 Query: 168 TVVLSNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 VLS+IRV+AID I D + G TATLE+TP QA+ LV A+++ L L LR Sbjct: 178 ETVLSDIRVLAIDQQITRGRDGAAIQGKTATLEVTPKQAEILVLAETMGMLQLSLRPQQG 237 Query: 226 LNPS----SSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEGIS 263 P+ E D E GK +Q K + S Sbjct: 238 DGPAVAPQPGEMLDFTADLEAGKALQASVGFAAKKKGTKASS 279 >gi|303241713|ref|ZP_07328210.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2] gi|302590714|gb|EFL60465.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2] Length = 250 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 114/261 (43%), Gaps = 23/261 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ IV+S + AL + + + + + ++I+V ++ +A Sbjct: 1 MESVNKRVIVISIILALFTTALVFLYI------KDATVKPDVVEYIDVYVAAKTMAAKYE 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T ++ +E + + ++ G ++ +++G+ I +LV N Sbjct: 55 ITEADIKKTRVTKEYLNTDAVLVQA------DIIGKRLKESVIEGEQILRSRLVQEDNFT 108 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---------PTVTVVL 171 L+ +P+G RA +++++ + V +I+P D VD++ L ++ V+ Sbjct: 109 LAYNVPEGMRAISVNVNEQTEVANLIRPGDFVDIIASFPLEKQDIGQNTIINLGISQTVI 168 Query: 172 SNIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 N++V+A+ I+ D+++ + T TL ++P A+ L + + LRSI D Sbjct: 169 QNVQVLALGQDLAIEEDKKLELPKTVTLAVSPKDAEKLTFVTEFGTMRMTLRSIGDDKII 228 Query: 230 SSEDSDVWDVQEEGKEIQIIK 250 S + + DV + I + K Sbjct: 229 SGDGTIKDDVMGDKGVIIVPK 249 >gi|27365650|ref|NP_761178.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6] gi|320156052|ref|YP_004188431.1| flp pilus assembly protein CpaB [Vibrio vulnificus MO6-24/O] gi|27361798|gb|AAO10705.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6] gi|319931364|gb|ADV86228.1| flp pilus assembly protein CpaB [Vibrio vulnificus MO6-24/O] Length = 279 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 96/271 (35%), Gaps = 25/271 (9%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 + V ++ + + Q VL + LA G + L Sbjct: 5 YMAVFAALSIALFLAGFVWLDTSQAQPPSQPLSTVEHKAKVLTTNRALAKGSFIERESLV 64 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLP 126 W + + ++ G + I + E L+ LS+L+ Sbjct: 65 WKEVSLAERESLGEVFLQPVFELDQIAGSVAVQFIPADSVLSPEMLLRPEQSDFLSALVK 124 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----------PTVTVVLSNIRV 176 G RA ++++ +A G+++P + VDV++ + V VL NI + Sbjct: 125 PGMRAISIELDPMAAGLGLLRPGNKVDVLLTSQSEIDQDANGTPIYNNMAVETVLQNIHL 184 Query: 177 IAIDHNIDSDERVLV------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 +AI + ++ ++ T E++ A+ LV A + +LSLVLR D + Sbjct: 185 LAIGNQYSPHQKPEKSAKSYDPTSVTFEVSLQDAEKLVLASKLGELSLVLRGNNDQTEVA 244 Query: 231 SED--------SDVWDVQEEGKEIQIIKAGV 253 ++ Q+ + + +I+ V Sbjct: 245 NKPLKWAKDISGAYDLEQQPTQSVTVIRGNV 275 >gi|302391028|ref|YP_003826848.1| Flp pilus assembly protein CpaB [Acetohalobium arabaticum DSM 5501] gi|302203105|gb|ADL11783.1| Flp pilus assembly protein CpaB [Acetohalobium arabaticum DSM 5501] Length = 278 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 109/250 (43%), Gaps = 18/250 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + IV++ + L+ ++ + +V+++K ++ Sbjct: 1 MNFK--VVIVIAVILGLITSGAVYFMMDNMQQEAV-----KEQPKASVVVAKQNIEPREQ 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118 +T + ++ P+E V + ++ + I+ G+ + +L+ + + Sbjct: 54 ITRSKVQLKQVPQETVHSQAVT------SISQAVEKFALKDIISGEQLLKPRLLGKEEVS 107 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-LSERKPTVTVVLSNIRVI 177 GL+ L KRA T+ ++ S V G + P D+VDVV V S ++ VL ++V+ Sbjct: 108 SGLAFNLADDKRAVTVPVTEVSGVAGFLTPGDYVDVVSVFSTYEAQQTVAKTVLQKVKVL 167 Query: 178 AIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+ ++ + D++ V + TL + +A+ LV A ++ LVLRS + + S S Sbjct: 168 AVAQDMVRERDQKPKVTKSVTLGVGLAEAEKLVLADRKGEIRLVLRSAQNESFSMSNGVK 227 Query: 236 VWDVQEEGKE 245 ++ +E Sbjct: 228 FEELVGNLEE 237 >gi|225174960|ref|ZP_03728957.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1] gi|225169600|gb|EEG78397.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1] Length = 238 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 94/235 (40%), Gaps = 17/235 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R + + + + LV + + + NV+++ + Sbjct: 1 MKANRKLLLA-AVIVGLVTVVALNSYIRSLNTPAL-----ASIPHSNVVVASSTIPAHTR 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 +T +L+ V+ P + V + ++ + G + R I++G+ + ++V Sbjct: 55 ITAEMLDVVSIPNDAVHPEALR------SVDDAAGGISRTEIVRGEQVIDARVVTEDRRA 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVI 177 LS +P+G RA ++ + + V G I D++DV++ +E V N+ V+ Sbjct: 109 TLSYRVPEGMRAISIPVGEVTGVAGYISAGDNIDVLITYDDTEIHEGAITYTVFQNVNVL 168 Query: 178 AIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 A N DE V T TL +T QA+ L A L LRS D + Sbjct: 169 ATGPNTREKDDEEQEVVGTVTLSVTAAQAEVLAYALLKGNYHLTLRSPLDEDEVE 223 >gi|253701799|ref|YP_003022988.1| Flp pilus assembly protein CpaB [Geobacter sp. M21] gi|251776649|gb|ACT19230.1| Flp pilus assembly protein CpaB [Geobacter sp. M21] Length = 291 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 110/218 (50%), Gaps = 13/218 (5%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 +EV + + ++++ D+ +G +TP L+ ++P++++ G D+ + + Sbjct: 30 QQEVKSAKAIQPQRIVVAAADIPIGTAITPAQLKVTSWPKDSIPPGSARDI------EAV 83 Query: 94 DGVLVRVPILKGDPIRLEKL----VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 + PI GD + KL G G ++ ++P+G RA T+ ++ + V G + P+ Sbjct: 84 ANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLTPS 143 Query: 150 DHVDVVMVR--SLSERKPTVTVVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKA 206 D VDV++ +E++ +VL N+ ++A D + + +V T TL+L P A+ Sbjct: 144 DRVDVIVTTPLPGNEKENISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDAEK 203 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 LV + S L L+LR+I+D++ S + + V + Sbjct: 204 LVLSASKGSLQLLLRNISDISHVDSRGATIGKVLYGSE 241 >gi|147677784|ref|YP_001211999.1| flp pilus assembly protein CpaB [Pelotomaculum thermopropionicum SI] gi|146273881|dbj|BAF59630.1| flp pilus assembly protein CpaB [Pelotomaculum thermopropionicum SI] Length = 242 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 97/242 (40%), Gaps = 27/242 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ + V A G + F V +++ + Sbjct: 1 MKNRLILILAVIVGLAAAGGTYVYL-------DNLKKSYVISGDFTRVAVARQRITARTR 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 +T ++E P + + + + +E+ G + + IL G+ I ++L + Sbjct: 54 ITAQMIELKDIPAKYINELA------AVSPEEIVGKIAKSEILPGEQILRDRLAQGSSAT 107 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVVLSN 173 GL+ +L GKRA T+ ++ S + G+IKP D VDVV E+ ++++ + Sbjct: 108 DGLAFMLQPGKRAVTVAVNEVSGLAGLIKPGDRVDVVGTFDLQGAPGQEKSSITSILIQD 167 Query: 174 IRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 + V++ D + ++ T TL +TP QA+ LV + L+LR D Sbjct: 168 VDVLSTDQATIPLQENGQNGKKEAPARTVTLSVTPEQAQPLVLCSEKGTIRLILRPATDH 227 Query: 227 NP 228 Sbjct: 228 EI 229 >gi|284048527|ref|YP_003398866.1| Flp pilus assembly protein CpaB [Acidaminococcus fermentans DSM 20731] gi|283952748|gb|ADB47551.1| Flp pilus assembly protein CpaB [Acidaminococcus fermentans DSM 20731] Length = 339 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 53/272 (19%), Positives = 98/272 (36%), Gaps = 39/272 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +LM + S A+ + + + V N + V+ + D+A V Sbjct: 27 MSPRKLMLLCGSAALAVFLLLYVILSALFPDQKPGNVAAGN----VTVVEAARDIAPQTV 82 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T +L+ V P V G + D ++ G + + GD + KL GG Sbjct: 83 LTEEMLKTVEVPANLVPAGALTD------KKQALGKKTGIDLFAGDILTERKLTS-HGGG 135 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 ++P G RA + ++ + V G KP D VD+++V +L ++ ++A++ Sbjct: 136 FVGMIPDGMRAVSFGVNDVTGVSGFAKPGDKVDILLVTDKEGNGIVSKTLLKDVLILAVN 195 Query: 181 HNID---------------------------SDERVLVGSTATLELTPMQAKALVAAQSV 213 + D S + S T+ LTP A L+ + + Sbjct: 196 KSSDRPQGTTQTSGSDKKTLTSGSQPAGNSGSTGSMGTPSVVTVALTPYDAAKLIGSSRI 255 Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245 +L ++LR AD + Sbjct: 256 GQLQMMLR-PADGSTDDKSIGYYVIPLPGNTA 286 >gi|319943381|ref|ZP_08017663.1| SAF domain protein [Lautropia mirabilis ATCC 51599] gi|319743196|gb|EFV95601.1| SAF domain protein [Lautropia mirabilis ATCC 51599] Length = 339 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 102/252 (40%), Gaps = 15/252 (5%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + L+ + + + VA R V+ E + + ++V+++ L G +V Sbjct: 11 RHRNLLLMSAAMLCGGVAIYAGSRYVNEQVQAERERLAPVAQQMVDVVVANATLDKGEIV 70 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + + P E V + P L G + +P+ G+ + + Sbjct: 71 SGETMAIRSVPAEYVSSSVVT----PEQFDALVGQRLLLPMRPGEMLSTAAVSSAEQLVF 126 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-------LSERKPTVTVVLSNI 174 SS + G RA T+ + +++ GM++P D +D+++ +L N+ Sbjct: 127 SSRVKPGIRALTISVDEINSISGMLQPGDRIDLLLTARPPSASGHGEAEHDATVPLLQNL 186 Query: 175 RVIAIDHNIDSD----ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 V+A + S+ T+E+TP QA+ L+ AQ +L+ VLR+ D P Sbjct: 187 LVMATGRQVRPGANDNGDDRSFSSVTVEVTPSQAQRLIVAQRAGRLTAVLRNPDDGMPMD 246 Query: 231 SEDSDVWDVQEE 242 + D+ + + Sbjct: 247 AAAVDLRSLFPQ 258 >gi|167908128|ref|ZP_02495333.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei NCTC 13177] Length = 256 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 102/204 (50%), Gaps = 12/204 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V ++ D+++G + PN L V +P +V G D ++ L+G + Sbjct: 29 VQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRV 82 Query: 98 VRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 R + +G+P+ KL GGLS+++ G RA T+ ++ V G P ++VDV++ Sbjct: 83 ARTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIV 142 Query: 157 V----RSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211 ++ +VL I V+A+ + D+ V + TLE++P QA+ L A+ Sbjct: 143 NTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLAR 202 Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235 SV LSLVLR+ D + S+ + Sbjct: 203 SVGTLSLVLRNQVDKDALSTGGAT 226 >gi|197106488|ref|YP_002131865.1| Flp pilus assembly protein CpaB [Phenylobacterium zucineum HLK1] gi|196479908|gb|ACG79436.1| Flp pilus assembly protein CpaB [Phenylobacterium zucineum HLK1] Length = 310 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 7/257 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M++ ++ + S V L A ++A ++ P + A + V+++ ++ G Sbjct: 1 MRVVTIVSLAASAVLGLGALVVAKTVL-PGAGAAKGAAVVQEAPGVPVVVAAREIKYGDK 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + P +L V P V G V Q + + + + +P+ K+ G+ Sbjct: 60 LVPGMLTIVNAPAGLVPQGAFQTVDQVLSADKGGPPVALTRLAAREPVLPTKISGPGSRP 119 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV----MVRSLSERKPTVTVVLSNIR 175 +S+ + +G RA T+ + SS VGG P D VDVV + S +R VV+ N R Sbjct: 120 TVSAEVGEGMRAYTLKVDASSGVGGHALPGDRVDVVLLRDLTPSGPDRNFISYVVVQNAR 179 Query: 176 VIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+ +D N D E+ STATLE++ +++ L A ++ LSL LR + + + Sbjct: 180 VLGVDLNADPTSEKPATPSTATLEVSVEESQKLAIAATLGTLSLALRRSGEAEIADAGPL 239 Query: 235 DVWDVQEEGKEIQIIKA 251 D G ++A Sbjct: 240 RTGDFLVGGGGRGPVRA 256 >gi|323700358|ref|ZP_08112270.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. ND132] gi|323460290|gb|EGB16155.1| Flp pilus assembly protein CpaB [Desulfovibrio desulfuricans ND132] Length = 273 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 111/247 (44%), Gaps = 15/247 (6%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 L+ I +S A++AG+I + + + EN + +K DL G+ +T Sbjct: 6 RALVQITLSLFLAVIAGVIIFKWTNGVKQAAPTAVVENTVPVVV---AKTDLGRGVKLTE 62 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGL 121 ++LE F +++ G +V ++++G ++ + GD + KL D+ GG+ Sbjct: 63 DMLEIRKFTQDSRPSGAFAEV------KQVEGRVLNQTVGMGDALTPLKLADKSIMGGGV 116 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-LSERKPTVTVVLSNIRVIAID 180 S+L+ GKRA + + + G ++P D VDV++ + KP +VL I+VIA Sbjct: 117 SALITPGKRAMAVKGNEVMGLSGFVRPGDRVDVIVSLTVGRNEKPVTKLVLEQIKVIATG 176 Query: 181 HNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 + ++ TLELTP +++ L A + L LR+ D + + V Sbjct: 177 TQLTPPNEEGKVASVGVYTLELTPAESERLALASTQGTLHFALRNEQDNADVRTIGTTVP 236 Query: 238 DVQEEGK 244 + Sbjct: 237 QTLAALR 243 >gi|261856885|ref|YP_003264168.1| Flp pilus assembly protein CpaB [Halothiobacillus neapolitanus c2] gi|261837354|gb|ACX97121.1| Flp pilus assembly protein CpaB [Halothiobacillus neapolitanus c2] Length = 258 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 113/262 (43%), Gaps = 18/262 (6%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + + V+ + +A ++A++ + + T P K V++ +L VG V++ Sbjct: 5 NRNFLYVAVAVLLGGLASVLAVKYI--NQQVATRTHTAAPQKMRTVVVPVHNLKVGDVLS 62 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L P V + P+ + G ++ P+ +G PI ++ S Sbjct: 63 AKDLATRDIPVAYVPADALT----PDDYESHLGQMLTTPLAQGAPISA-MAMEPIANHFS 117 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH- 181 ++ + A T+D+S ++++ G+I P DH+D++++ S + + +LS++ V+A Sbjct: 118 DIIKPDRVAYTIDVSETNSISGLIVPGDHIDILLLLSKNSKDDI-RPLLSDVLVLATGKH 176 Query: 182 ----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 D E S TLELTP A+ + A+ + +L ++LRS P + Sbjct: 177 AKGVRSDGTEGNQGYSNLTLELTPKNAQRIGIAKKMGQLLVMLRSPDTKFPPNLGLLTAS 236 Query: 238 DVQEEGKE-----IQIIKAGVI 254 D+ G +Q I G Sbjct: 237 DLLGAGPRAHGGGVQFIIGGRQ 258 >gi|220922531|ref|YP_002497833.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] gi|219947138|gb|ACL57530.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] Length = 307 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 12/245 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+L + +V++ A +A + + P ++++ L G Sbjct: 1 MRLGSTLTLVLALALGGSAAFLARSYLMSVSS-----VGPAPLPAHTIVVATQPLPFGTQ 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 +TP + +P E +G + + +V I + + + K+ G Sbjct: 56 LTPENTTEIDWPSETRLEGSFATRDELLRGER---RVVLSSIARNEVVLAGKITGPGQRA 112 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVI 177 LS+L+ +G RA + + V G I PND VDVV+ R R+ ++L N++V+ Sbjct: 113 TLSTLIEEGMRAVAVRVDDVRGVAGFILPNDRVDVVLTRDEEARESKGFADILLQNVKVL 172 Query: 178 AIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 AID D ++ V TLEL P+QA+ ++ AQ V +LSL+L + + V Sbjct: 173 AIDQLANDHADKPTVARAVTLELNPVQAQKIILAQGVGRLSLILNKAGNATSDTPSRVTV 232 Query: 237 WDVQE 241 D+ Sbjct: 233 ADLGR 237 >gi|297618080|ref|YP_003703239.1| Flp pilus assembly protein CpaB [Syntrophothermus lipocalidus DSM 12680] gi|297145917|gb|ADI02674.1| Flp pilus assembly protein CpaB [Syntrophothermus lipocalidus DSM 12680] Length = 242 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 111/246 (45%), Gaps = 24/246 (9%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 +++ +F L A ++A R ++ + E P + V+++ D+ V+T ++ Sbjct: 9 ILAILFGLAATVLAYRYIAGVKARYE------PKNLVQVVVAATDIPKNSVITREKVKLE 62 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG--LSSLLPK 127 P + + D + E+ G + I+ G+ I K++ L+ +P Sbjct: 63 LVPAQFAHPAAVRD------LDEVVGRVAASYIVAGEEILSAKIISDAEKTNKLAYAVPM 116 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV---VLSNIRVIAIDHNID 184 GKRA ++ ++ S V G+++P D VDV+ L+ + V V +L ++ V+A+D N+D Sbjct: 117 GKRAVSVPVNAVSGVSGLVRPGDRVDVIATVELASGQENVAVTSFILQDVEVLAVDQNLD 176 Query: 185 SDER-------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 + +T TL +TP +A+ LV A + L LR+ AD + + Sbjct: 177 ETKPVPAAKEEAAPATTVTLAVTPEEARPLVLASEQGSIRLALRAPADHDRVMLPPVRLV 236 Query: 238 DVQEEG 243 D+ Sbjct: 237 DIVGGQ 242 >gi|261251599|ref|ZP_05944173.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] gi|260938472|gb|EEX94460.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] Length = 279 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 99/245 (40%), Gaps = 25/245 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RLM + + +A ++ E F VL++K + VG Sbjct: 1 MTAKRLMLLSLILSAVGIAILLL-----NPSKPQSEQRQAAAEVFKRVLVAKQGVVVGQP 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 T N+ +W + E+ + + + + +L + I G + + +G Sbjct: 56 YTLNMFQWKSVSEQELNNYLDFISEEEFSRLDLKPGIAHTAIQSGQVMSSDDFETPASGI 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVV 170 ++ + G RA ++ + +A G ++P D VD++++ S E VT + Sbjct: 116 SMAFKVQSGHRAISVPVDAVTANSGFVQPGDKVDILLLGSQVEELKKYDNQVAGLYVTTI 175 Query: 171 LSNIRVIAIDHNIDSDE----------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ++RV+A + D + + S+ +LE+TP QA +V A + KL+L L Sbjct: 176 AIDVRVLAFNQYADPQDFQKNRSAYGADIPDNSSVSLEVTPEQATQIVLANQIGKLTLSL 235 Query: 221 RSIAD 225 R + Sbjct: 236 RGAGE 240 >gi|260778163|ref|ZP_05887056.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] gi|260606176|gb|EEX32461.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] Length = 279 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 25/247 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RLM + + + ++ + + F VL+S D+ VG V Sbjct: 1 MTAKRLMMLSILLSSVGIGLLLL-----GQDNSEHQTKEQPEQVFQRVLVSGQDIGVGDV 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 TPN+ W + EE + D L + + I +G I L+ G Sbjct: 56 YTPNMFRWQSLSEEQLSDYVDYVTEDEITSINLASGIAHIAIKQGQVIAAADLIPPQGGA 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVV 170 L+ + G RA ++ + +A G ++P D VD++++ S V+ + Sbjct: 116 SLALKVRAGYRAVSVPVDQVTANSGFVQPGDKVDILLLGSKVSELKKYDNVVEGLYVSTI 175 Query: 171 LSNIRVIAIDHNIDSDE----------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 +N+R++A ++ S+ ++ S+ +LE+TP QA +V A + +L+L L Sbjct: 176 ATNVRILAFNNLSSSEGFQEKRHDYGAKIPDNSSVSLEVTPEQATQIVLANQLGRLTLSL 235 Query: 221 RSIADLN 227 R + + Sbjct: 236 RGSGETD 242 >gi|86159250|ref|YP_466035.1| Flp pilus assembly CpaB [Anaeromyxobacter dehalogenans 2CP-C] gi|85775761|gb|ABC82598.1| Flp pilus assembly CpaB [Anaeromyxobacter dehalogenans 2CP-C] Length = 307 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 16/214 (7%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 E V+++ DL + ++L V +P NV +G D + L Sbjct: 48 VETRTAAARVSTTPVVVATIDLPEATTLRADVLTVVQWPSANVPEGAASDPAK------L 101 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 +VR ++KG+P+ +L G GL+++LP G RAA + ++ V G I P D V Sbjct: 102 VDRVVRARVIKGEPVIESRLAAADAGHGLAAILPPGMRAAAVRVNDVVGVSGFIHPGDSV 161 Query: 153 DVVMVRSLSERK-----PTVTVVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPMQ 203 DV++V ++L N+ V+A+ ++ + E+ L + ATL + Q Sbjct: 162 DVIVVMRPESNGNSNPAYFSKIILQNVPVLAVGKELERNERSLEKSLPATVATLMVDSEQ 221 Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 ++ L AQ+ + L LRS D + + Sbjct: 222 SEKLALAQTKGNILLTLRSGIDRELVDTTGVNPA 255 >gi|197117447|ref|YP_002137874.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem] gi|197086807|gb|ACH38078.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem] Length = 291 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 109/217 (50%), Gaps = 13/217 (5%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 +EV + A+ ++++ D+ +G +TP L+ ++P++++ G ++ + Sbjct: 30 QQEVKSAKAAQPQRIVVAAVDIPIGTAITPAQLKVASWPKDSIPPGSAR------GIEAV 83 Query: 94 DGVLVRVPILKGDPIRLEKL----VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 + PI GD + KL G G ++ ++P+G RA T+ ++ + V G + P+ Sbjct: 84 ANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLTPS 143 Query: 150 DHVDVVMVR--SLSERKPTVTVVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKA 206 D VDV++ +E++ +VL N+ ++A D + + +V T TL+L P A+ Sbjct: 144 DRVDVIVTTPVPGNEKENISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDAEK 203 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243 LV + S L L+LR+I+D + S+ + + V Sbjct: 204 LVLSASKGSLQLLLRNISDSSHVDSKGATIGKVLYGS 240 >gi|260463893|ref|ZP_05812089.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] gi|259030268|gb|EEW31548.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] Length = 299 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 105/266 (39%), Gaps = 23/266 (8%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTE-----EVITENPAKFINVLISKGDLAVGMVVT 62 I ++ VF ++ A V E +F ++++ L GM + Sbjct: 1 MIGIAAVFGAISIFAADFWVKSQADAQEKTASIAAPAPPKIEFKTIVVANAPLRYGMELD 60 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121 L + +P++++ G + G +V PI +P+ L KL L Sbjct: 61 RTKLIEIPWPQDSLPQGAFATIDGLLGEG---GRVVLSPIEVNEPVLLTKLSGPNGRATL 117 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-------------ERKPTVT 168 S++L G RA T+ + VGG + P D VDVV+ R T Sbjct: 118 SNMLTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQGAAGSTITSE 177 Query: 169 VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 +V+++ +V+++ D + + ++ TLE+T A+ + A++V LSL LRS ++ Sbjct: 178 IVVADAKVLSVGQGADERQTAPQIANSVTLEVTTEGAQKVALARTVGTLSLSLRSASEGG 237 Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGV 253 + + + AG Sbjct: 238 DGKNGVTTISSFGGSVASKAQATAGS 263 >gi|300856049|ref|YP_003781033.1| putative cell wall-binding protein [Clostridium ljungdahlii DSM 13528] gi|300436164|gb|ADK15931.1| putative cell wall binding protein [Clostridium ljungdahlii DSM 13528] Length = 321 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 98/225 (43%), Gaps = 24/225 (10%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 + AK +L++ ++ G ++ +++ + P +FD +I D + + G Sbjct: 33 SSEAAKKTTILVAAETISPGTLIDKKMIKKIQVPYNPIFDNYIKDSSK------IAGKYT 86 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 I K + ++KL+++G L+ + RA ++ ++ S V G++KP D+VD+++ Sbjct: 87 TETISKNEGFHIDKLLEKGGDELNLKIDNDYRAISISVTGDSGVSGLLKPKDYVDIIVYT 146 Query: 159 SLSERK------PTVTVVLSNIRVIAIDHNIDSDERVLVGS------------TATLELT 200 S +VL NI+V+A+D I D + + TL + Sbjct: 147 SEKRDGIKVVRPDEAKIVLQNIQVLAVDKQISRDNKESNSNKSSDNGKAPTNFLVTLSVK 206 Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245 + +V AQS+ + L LR + D + + + D+ E Sbjct: 207 VSDLEKVVLAQSIGSIKLALRPLKDEITTQTNGTTWEDMSVNTDE 251 >gi|84685163|ref|ZP_01013062.1| pilus assembly protein [Maritimibacter alkaliphilus HTCC2654] gi|84666895|gb|EAQ13366.1| pilus assembly protein [Rhodobacterales bacterium HTCC2654] Length = 275 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 8/242 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ L+ A+ +A R++ T + + ++ + D+ G Sbjct: 1 MRKAPLILAASGIALAVGCAAVAQRVLGGSEQAAP---TVAVPETVVLIAAARDIRFGEP 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + + L +P + V G D + I +GD + + + G Sbjct: 58 IRRDDLVPQTWPADLVPTGAFDSATVLLGAEGTAPRRATQTIREGDVVLAANVSEFGASV 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 + S L G RA + ++ +AVGG + P DHVD+V+ V+L + RV+A+ Sbjct: 118 TIGSTLSPGTRAVAIRVNADTAVGGFVSPGDHVDIVLT-QGRGDTLRTGVILQDTRVLAV 176 Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 D + ++ T T+E+ P ++ LV AQ +LSL+LR+ D + + D + Sbjct: 177 DQDTEARG-ARKARTITVEVAPRDSQRLVLAQEAGQLSLILRN--DDAIGDTGEMDQITL 233 Query: 240 QE 241 ++ Sbjct: 234 RD 235 >gi|153006806|ref|YP_001381131.1| SAF domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152030379|gb|ABS28147.1| SAF domain protein [Anaeromyxobacter sp. Fw109-5] Length = 322 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 14/219 (6%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E + V+++ D+ ++ L + +P + G D L Sbjct: 52 EAKASAAKVPTTKVVVASVDIPSATMLRTESLSVIDWPSASTPQGTFADPA------TLV 105 Query: 95 GVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 +V + KG+PI +L GL+++LP G RA + ++ V G + P D VD Sbjct: 106 ERVVTSAVSKGEPILESRLAAPGTAAGLAAVLPAGMRAVAVRVNDVVGVAGFLHPGDAVD 165 Query: 154 VVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPMQAKA 206 V++ S S P ++L N+RV+A+ ++ ++ + + ATL + Q++ Sbjct: 166 VIVTMSPSGGGGQAPMSKIILQNVRVLAVGKEVERADRAFDKAIPATVATLMVDSEQSEK 225 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245 L A + ++ L LRS AD ++ + G+E Sbjct: 226 LALAATKGQILLSLRSGADEEMLATPGITPPVLLASGRE 264 >gi|237653357|ref|YP_002889671.1| Flp pilus assembly protein CpaB [Thauera sp. MZ1T] gi|237624604|gb|ACR01294.1| Flp pilus assembly protein CpaB [Thauera sp. MZ1T] Length = 286 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 113/253 (44%), Gaps = 15/253 (5%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 L+ + V+ +F L A +A R + + E+ + + +++K DLAVG +T Sbjct: 6 PRNLIILAVASLFGLGAAWLAARYL---EERATEIELRQQGQMGHAVVAKTDLAVGTPLT 62 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 +++ P E + I P + G ++ P G+P+ +L +R LS Sbjct: 63 RDLVAVREVPVEWLHSSAIT----PEQFERAAGAVLAQPARGGEPLVWSQLEERRPATLS 118 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 + L G+RA T+ + +S++ G+++P D +D++ +L +RV+A Sbjct: 119 AQLAPGRRATTIPVDETSSLSGLLRPGDRIDLLATVQRD-HHHLTLPLLQGVRVLATGSR 177 Query: 183 IDSDERVLVG-------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 E G T TL+L+ +A LVAA+++A+L+ VLR D + + +D Sbjct: 178 TRPGEDDGAGDLLGGSFGTLTLDLSEEEATRLVAARALARLTAVLRHPRDTRTAPLQRTD 237 Query: 236 VWDVQEEGKEIQI 248 + + Sbjct: 238 ALALLGLAPPARE 250 >gi|260892925|ref|YP_003239022.1| Flp pilus assembly protein CpaB [Ammonifex degensii KC4] gi|260865066|gb|ACX52172.1| Flp pilus assembly protein CpaB [Ammonifex degensii KC4] Length = 233 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 20/235 (8%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 A+ A + + A +++V+++ D+ V +TP++L+ P Sbjct: 13 CAVGAAVGTYFYLERLKATY-----RQKAHYVSVVVAAQDIPVRTSLTPSLLKLQDLPSS 67 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG--GLSSLLPKGKRAA 132 V + + ++ G + VP+++G+ + KL + L+ L G+RA Sbjct: 68 CVHPLAVRRI------EDAVGRVTTVPLVRGEVLLQSKLASSKDEKQELALSLQPGERAV 121 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSNIRVIAIDHNIDSDERV 189 T+ ++ S VGG++KP D VDVV L + T +V SN+RV+A+ + Sbjct: 122 TLAVNAVSGVGGVLKPGDRVDVVATFDLESQGTKTTYTALVASNVRVLALGSS----GEK 177 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 T TL +TP Q + A + L LR + + + D+ E GK Sbjct: 178 KPYDTVTLAVTPRQGALITLATERGSVRLFLRGPKEQEATQLLPVKLPDLLEAGK 232 >gi|239814525|ref|YP_002943435.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110] gi|239801102|gb|ACS18169.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110] Length = 280 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 13/209 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ D+ +G V P +L V +P ++ G D + L+ +V+V +L+G+ Sbjct: 38 KVVVAAVDIELGSRVNPQMLSLVDWPSGSLPAGSFKD------AKSLEDRVVKVGVLRGE 91 Query: 107 PIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSL 160 I KL GGLS+++ GKRA T+ ++ V G P ++VDV++ Sbjct: 92 AILEGKLAPVGTQGGLSAVIASGKRAMTVRVNDVVGVAGFALPGNYVDVMVNAQQDKNRG 151 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 E + VL + V+A+ + D+ + V S TLEL+ ++ L A+SV LSLV Sbjct: 152 EEGRQISKTVLEKVLVLAVAQEANRDDTKPKVVSAVTLELSLEDSEKLDLARSVGTLSLV 211 Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQI 248 LR+ D ++ + E + I Sbjct: 212 LRNQMDKTTVATAGITKGQLFGEKDILPI 240 >gi|116623254|ref|YP_825410.1| SAF domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116226416|gb|ABJ85125.1| SAF domain [Candidatus Solibacter usitatus Ellin6076] Length = 300 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 99/249 (39%), Gaps = 17/249 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +M + VS V+AL+ RL A V+++ L G Sbjct: 3 MDRRFVMVMGVSLVWALMVSAAFFRLAGGGG-------RTRAASRKQVVVATRPLPAGST 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNG 119 + + ++ + PE+ G V +++ V I +P+ +L V Sbjct: 56 LDRDAVKLRSVPEDVFPAGAFSRV------EDVLERPVISAIQPEEPVVEARLAVKGSGA 109 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVTVVLSNIRVIA 178 GL ++P G RA ++ ++ V G + P VDV++ + VL NI V++ Sbjct: 110 GLGPMIPTGMRAISVRVNDVVGVAGFVLPGMRVDVLVTGKPLNRADTETQTVLQNITVLS 169 Query: 179 IDHNIDSDERVLV--GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 I +D R TL +TP +A+AL A + + LVLR+ D + + + Sbjct: 170 AGQTITTDGRSQPIMAPVVTLLVTPGEAEALTLANTEGHIQLVLRNSTDRISAPTRGRRL 229 Query: 237 WDVQEEGKE 245 ++ E Sbjct: 230 HELYGAAAE 238 >gi|294012432|ref|YP_003545892.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] gi|292675762|dbj|BAI97280.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] Length = 338 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 14/226 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVGM 59 M +++ +V + + A+ ++A ++S + A +VL++ L VG Sbjct: 1 MDAKKIVLLVGALIIAVTTALLARNMLSSSSAPPAGASSMPVEADQPHVLVATKALPVGT 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 ++ + +P++ V + Q+L G ++R I G P+ L ++ G Sbjct: 61 ILDAESFRFQPWPKDLVEQAYYIKGQA--DPQKLVGSVIRTAISAGQPMTLGSVIKPGER 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVLSN 173 G L++ L G RA T+ +S ++V G + P D VD+V+ +S+S +L N Sbjct: 119 GFLAAALGPGMRAVTVPVSAQNSVAGFVFPGDRVDLVLTQSVSGGGEGEPLKVSETILRN 178 Query: 174 IRVIAIDHNIDSDERVLVG-----STATLELTPMQAKALVAAQSVA 214 +RV+A D +D+ S T+E+TP A+ + AQ++ Sbjct: 179 LRVLATDQRMDALGDDGKPVVQTYSNVTIEVTPKIAEKIAVAQTIG 224 >gi|197123318|ref|YP_002135269.1| Flp pilus assembly protein CpaB [Anaeromyxobacter sp. K] gi|196173167|gb|ACG74140.1| Flp pilus assembly protein CpaB [Anaeromyxobacter sp. K] Length = 307 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 16/214 (7%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 E V+++ DL + ++L V +P NV +G D + L Sbjct: 48 VETRTAAARVSTTPVVVATIDLPEATTLRADVLSVVQWPSANVPEGAASDPAK------L 101 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 +VR ++KG+P+ +L G GL+++LP G RAA + ++ V G I P D V Sbjct: 102 VDRVVRARVIKGEPVVESRLAAADAGHGLAAILPPGMRAAAVPVNDVVGVAGFIHPGDSV 161 Query: 153 DVVMVRSLSERKPT-----VTVVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPMQ 203 DV++V + ++L N++V+A+ + + E+ L + ATL + Q Sbjct: 162 DVIVVMRPETNGNSNPAFFSKIILQNVQVLAVGKELGRNERSLEKSLPATVATLMVDSEQ 221 Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 ++ L AQ+ + L LRS D + + Sbjct: 222 SEKLALAQTKGSILLTLRSGIDRELVDTTGVNPA 255 >gi|319788662|ref|YP_004148137.1| Flp pilus assembly protein CpaB [Pseudoxanthomonas suwonensis 11-1] gi|317467174|gb|ADV28906.1| Flp pilus assembly protein CpaB [Pseudoxanthomonas suwonensis 11-1] Length = 274 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 22/244 (9%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + I ++ AL+A +A+ V T T++ + V + D+ G ++ Sbjct: 7 SKNFLYIAIAVGMALLAAFVAVNYVQT----TVAERTQDNRPMVEVAVPMDDMPQGAILQ 62 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 P L P E + P + +G ++R P+ G P+ LV S Sbjct: 63 PGDLALRRIPAEYAPADAVT----PENHGQFEGRMLRSPVRGGAPLSASALV-PLYDQFS 117 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTVVLSNIRVI 177 L+P+GK A T+ + ++++ GMI P D +D++ ++ E +L +RV+ Sbjct: 118 RLIPRGKVAYTLSVDENNSISGMIAPGDLIDILFLKDKDESSGARTGALALPLLQQVRVL 177 Query: 178 AIDHNIDS--------DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 A I + S+ TLEL QAK L A L ++LR + D +P Sbjct: 178 ATGTRIGERVAPDGRPADDGQGFSSVTLELDHGQAKTLAVASEAGSLRVLLRELEDDSPG 237 Query: 230 SSED 233 + Sbjct: 238 PHDG 241 >gi|119773844|ref|YP_926584.1| Flp pilus assembly protein CpaB-like protein [Shewanella amazonensis SB2B] gi|119766344|gb|ABL98914.1| Flp pilus assembly protein CpaB-like protein [Shewanella amazonensis SB2B] Length = 298 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 107/279 (38%), Gaps = 25/279 (8%) Query: 1 MKLTRL----MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLA 56 M+ R+ + + ++ V +A + ++ + K ++V+++ +L Sbjct: 1 MQSKRIDFNWVLLGIALVLGSLAAWATKNYFIVKEQEIRAELSNSNVKMVDVVVATQELR 60 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G +V + + + + I P+ E+ G ++ + G P+ L Sbjct: 61 KGDIVDETNMSVRSIRADVIPLDAIR----PSQFNEVAGQMLLSEMSPGRPLISAYLPGF 116 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---SLSERKPTVTVVLSN 173 S LL +G+RA T+DI+ ++ GM+ P+D VD+ + + + + +++ Sbjct: 117 KTRQFSDLLQEGQRAVTIDINEENSTAGMLVPSDLVDLFLSYTVENGDSERVKMELLIEK 176 Query: 174 IRVIAIDHNIDSD---------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +V+A + +T TL L+ A + A+ K +LR+ A Sbjct: 177 AQVLATGKRSIDVHPELVNSIYDNPDSYNTVTLALSTEDAIRVSLAKGRGKFVTLLRNKA 236 Query: 225 DLNPSS-----SEDSDVWDVQEEGKEIQIIKAGVIVNKD 258 + P + + + +++ I G + Sbjct: 237 ESAPVAVTNMFGDQIFGMSGDKGSHQVEYITGGGGLKSS 275 >gi|217978827|ref|YP_002362974.1| Flp pilus assembly protein CpaB [Methylocella silvestris BL2] gi|217504203|gb|ACK51612.1| Flp pilus assembly protein CpaB [Methylocella silvestris BL2] Length = 338 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 106/266 (39%), Gaps = 25/266 (9%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF---INVLISKGDLAVGMVV 61 R + IV+ VF + + + V + EV + A +L + + G ++ Sbjct: 4 RKLLIVLGAVFVIAGVGLCIAWVGQLRNREIEVASPAAAPAASEQAILSATRAIPAGELL 63 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GG 120 + + W V G + A E G + R G+ + LV + Sbjct: 64 RSDDIGWKNVGAAGVQAGNLLRGQ--VAETEFFGAITRRDFAAGEGLIASDLVKPNDRRF 121 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIR 175 L+++L G+RA ++ + + + G++ P D+VDV++ + + R+ VL N+R Sbjct: 122 LAAVLKPGRRALSVSVDAAQSAAGLVLPGDYVDVILTQDFGDKIDIGRRTVSETVLWNVR 181 Query: 176 VIAIDHNIDSDERVL-----------VGSTATLELTPMQAKALVAAQSVAKLSLV---LR 221 VIA+D ++D+ + + T TLE+ QA+ L+ A + K L L Sbjct: 182 VIAVDQSLDAQTSTVAEHTALGAESHIPKTVTLEMFERQAETLLVAAQLGKFQLAVRPLV 241 Query: 222 SIADLNPSSSEDSDVWDVQEEGKEIQ 247 D+ + + ++ Sbjct: 242 GSGDVKIEDQHIAKPLWASDVSPALK 267 >gi|148976308|ref|ZP_01813032.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3] gi|145964402|gb|EDK29657.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3] Length = 290 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 112/269 (41%), Gaps = 24/269 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RL+ + + ++ ++ S + +E+V + I VL+ + +G Sbjct: 1 MTAKRLLLLSLLCSVVALSVLLF----SQGNNASEKVSVPTTQQTIKVLVPSRTIDIGQN 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 TPN +W A P + + + + + + +++G + + + G Sbjct: 57 YTPNSFQWKAIPLGELENYIDYVTPESISEDHSMSGIAQTKLVEGSVLSHADITEPKGGY 116 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVV 170 LS L G RA ++ + +A G I+P D VD++++ S + VT + Sbjct: 117 SLSFKLQPGYRAISVPVDQITANSGFIQPGDRVDILLLGSQDGELLRYGNSSQGLYVTTI 176 Query: 171 LSNIRVIAIDHNIDSDERVLV----------GSTATLELTPMQAKALVAAQSVAKLSLVL 220 + + RV+A ++ ++ V S+ +LE+TP QA +V A+ + KL+L L Sbjct: 177 VHDARVLAFNNTQAAESYQKVRDSYGAVIPDNSSVSLEVTPEQANQVVLAEQLGKLTLAL 236 Query: 221 RSIADLNPSSSEDSDVWDVQEEGKEIQII 249 R D + + + V QI+ Sbjct: 237 RGQNDTQVNVQQANSVTLEVISPDTTQIL 265 >gi|51468905|emb|CAE47778.1| pilus assembling protein [Bdellovibrio bacteriovorus] Length = 314 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 100/259 (38%), Gaps = 31/259 (11%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 ++ AG+ A L+ + + + + V+++K D+A + ++E P + Sbjct: 24 LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTIYDTMVETKELPAD 83 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAAT 133 + I E+ G + VPI KG + L+ + G+S + KRA T Sbjct: 84 FIQPDAITIPD------EIIGNVAAVPIRKGQMVVKNNLLTPGPDTGISLQVAPSKRAVT 137 Query: 134 MDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIRVIAIDHNIDSD---- 186 + + V +I+P D +D+ ++ V +++++ V+A ++ ++ Sbjct: 138 IPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNIPRM 197 Query: 187 ---------------ERVLVGSTATLELTPMQAKAL--VAAQSVAKLSLVLRSIADLNPS 229 +T T+E TP +A+ L + + + L + LR+ +D Sbjct: 198 FELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDRTIP 257 Query: 230 SSEDSDVWDVQEEGKEIQI 248 S D + + Sbjct: 258 PRMPSSTSDSVLGKPMVSV 276 >gi|332284570|ref|YP_004416481.1| putative secreted protein [Pusillimonas sp. T7-7] gi|330428523|gb|AEC19857.1| putative secreted protein [Pusillimonas sp. T7-7] Length = 326 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 99/248 (39%), Gaps = 13/248 (5%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 L ++++GV L A A + + + + + + + +++ DL G + Sbjct: 7 NRSLAMLLLAGVAGLGAAWAAKQHIDG---KVQLLEAQARTPMVERIVAAYDLPAGTRLG 63 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 P L FP G + P EL G ++R P+ GD + + + S Sbjct: 64 PEHLALRHFPANVASSGSL----APGRFTELTGTMLRAPLRGGDAVLEVHTTGQDHAAFS 119 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 S L G+RA +M + ++V G+++P D +D+ + +R+ +L + V+A D N Sbjct: 120 SHLSAGRRAISMPVDAINSVSGLLQPGDLIDLYVSFEY-QRRHITAPLLQGVLVLATDAN 178 Query: 183 ID-----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 +T TL+ +P A LVAA+ ++ VLR D+ S Sbjct: 179 TQFVQDAGHASRGSYATVTLDASPEDAVKLVAARQGGTITAVLRPPQDVASSQKAVRGDL 238 Query: 238 DVQEEGKE 245 Sbjct: 239 ASLLGVNR 246 >gi|326797326|ref|YP_004315146.1| Flp pilus assembly protein CpaB [Marinomonas mediterranea MMB-1] gi|326548090|gb|ADZ93310.1| Flp pilus assembly protein CpaB [Marinomonas mediterranea MMB-1] Length = 315 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 57/280 (20%), Positives = 104/280 (37%), Gaps = 36/280 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN-VLISKGDLAVGM 59 MK + + + + +FAL ++ L++ VL++ L G Sbjct: 1 MKASSVFFVSGALIFALGGALLGSALLTSEPPPKTVTKVVPKKPNYRAVLVASNTLRPGD 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GN 118 + +EW A ++ D F + +L G V PI G + + LV Sbjct: 61 FMNATSIEWRAADKQYPEDAFFLKG--LDEKSQLYGATVTQPIPAGTELESDLLVSPGEP 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------- 165 G ++S+L G RA + + ++ G+I D VDV++ + Sbjct: 119 GFIASVLKPGMRAVAIPADVVTSNAGLISGGDRVDVILSLKRDYEQGADNNPLATIKLPK 178 Query: 166 -TVTVVLSNIRVIAIDHNID-----------------SDERVLVGSTATLELTPMQAKAL 207 +L N+RV++++ +D + T TLE+ P + L Sbjct: 179 LASQTLLRNVRVLSLNGTLDAFREKVQKVESKKEKKTDSNKRKSYETVTLEVLPKDVERL 238 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 A+ V L L LRS+ + + S + D +E E+ Sbjct: 239 TVAREVGILQLALRSVQGQDLALSTSPEK-DSKESQSEVT 277 >gi|283779854|ref|YP_003370609.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068] gi|283438307|gb|ADB16749.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068] Length = 372 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 104/239 (43%), Gaps = 19/239 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M++ L+ I ++ LVA I +++ + +L++ D+ + Sbjct: 1 MRMKSLILIFIALGCGLVASIGISQVMERGGSGAAPA-----MEMEQILVALADIDIDAK 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + ++ +P+ V +G + ++ E++ + KG+PI L K+ D+ Sbjct: 56 LNAENVQLEEWPKSKVPEGAVR------SLDEVEAKFAQQRFFKGEPILLAKISDQNVNP 109 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRVIA 178 + +P+G R + + + V I P D VDV++ SE + +L N+RV A Sbjct: 110 M-IRIPEGYRVMPVKVDDET-VLKAISPGDRVDVMVFLRRSEEIKQTATYTILRNVRVFA 167 Query: 179 IDHNIDSD----ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 ++ N + D + + T +L + P Q++ L A + K+ L +R + + + + Sbjct: 168 VNSNTERDLETKGQDVNARTVSLIIKPQQSRELAVASQIGKIILTMRRPDETDEAGEGE 226 >gi|328953762|ref|YP_004371096.1| Flp pilus assembly protein CpaB [Desulfobacca acetoxidans DSM 11109] gi|328454086|gb|AEB09915.1| Flp pilus assembly protein CpaB [Desulfobacca acetoxidans DSM 11109] Length = 272 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 101/236 (42%), Gaps = 16/236 (6%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 F A IA + ++A G V+ P +L+ V P+E Sbjct: 16 FGGFAAYIASGWLKARARPAARDSVAMMPAVAA----ARNIAPGSVLIPELLKVVQLPKE 71 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAAT 133 +V D ++ L+G + R I+ G+ I+ +L +G GG++ ++ KRA T Sbjct: 72 HVAADAATD------LKALEGRVTRQLIVAGEVIQEHELAPKGAPGGMAGIIGNDKRAVT 125 Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIAIDHNIDS---DER 188 + + +S V G I P + VDV++ +E P +VL N+ V+ +I+ ER Sbjct: 126 IKVDEASGVAGFIVPGNRVDVLLSLDRNEFKNDPVTQIVLQNLPVLGTGQDIEQQKAGER 185 Query: 189 VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 V T TLE+TP + + L A ++L LR + + + V + K Sbjct: 186 PKVVPTVTLEVTPEEGERLALAAKEGTITLALRGWTEKAAIPTAGARVSALLTPEK 241 >gi|307293449|ref|ZP_07573295.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] gi|306881515|gb|EFN12731.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] Length = 338 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 105/226 (46%), Gaps = 14/226 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVGM 59 M +++ +V + + A+ ++A ++S + A +VL++ L VG Sbjct: 1 MDAKKIVLLVGALIIAVTTALLARNMLSSSSAPQASASSMPVEADQPHVLVATKALPVGT 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 ++ + +P+E V + + Q+L G ++R I G P+ L ++ G Sbjct: 61 ILDAESFRFQPWPKELVEQAYYLKGQ--SDPQKLVGSVIRTAISAGQPMTLGSVIKPGER 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVLSN 173 G L++ L G RA T+ +S ++V G + P D VD+++ +S+S +L N Sbjct: 119 GFLAAALGPGMRAVTVPVSAQNSVAGFVFPGDRVDLMLTQSVSGGGDGEPLKVSETILRN 178 Query: 174 IRVIAIDHNIDSDERVLVG-----STATLELTPMQAKALVAAQSVA 214 +RV+A D +D+ S T+E+TP A+ + AQ++ Sbjct: 179 LRVLATDQRMDALGDDGKPVVQTYSNVTIEVTPKIAEKIAVAQTIG 224 >gi|322434103|ref|YP_004216315.1| Flp pilus assembly protein CpaB [Acidobacterium sp. MP5ACTX9] gi|321161830|gb|ADW67535.1| Flp pilus assembly protein CpaB [Acidobacterium sp. MP5ACTX9] Length = 291 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 19/230 (8%) Query: 1 MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M RL +++ + + + + R + H + + + L G Sbjct: 1 MNGRRLTTAFLIALLISGLCTWVLSRKMGTH--------AAERVADQHYVAASRPLQSGE 52 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + P+ +E V +P N G ++L G V P+ K P+ + L G+G Sbjct: 53 QLKPDSMELVNWPASNPIAGGFLKP------EDLVGRSVLYPVEKDQPLTDKLLSTAGSG 106 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-KPTVTVVLSNIRVI 177 GL++ +P G RA ++ V G + P H+DV++ + +P VL + V+ Sbjct: 107 PGLAARIPAGMRAISLKSDEIMGVAGFLSPGSHLDVLVTYRTDKNPEPVTLTVLQDAEVL 166 Query: 178 AIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 A D D + + + TL LTP A+ V A S + +LRS +D Sbjct: 167 AAGQKIQPDPDGKPVTATVVTLLLTPEDAQRAVLASSQGAIHFILRSGSD 216 >gi|225181998|ref|ZP_03735430.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1] gi|225167283|gb|EEG76102.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1] Length = 229 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 16/230 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + + S + ALVA ++ Q++ +L+++ ++ Sbjct: 1 MKGKKFFLL--SLILALVAAGAIFHYLNEMERQSKSAAN-----LTTILVAREEIPARTR 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 ++ ++ P++ + I + ELDG R ++ G+ + +LV + Sbjct: 54 LSASMFTTAEVPQDAIHGDAIRETS------ELDGAYARERLVAGEQVLSARLVFEQSET 107 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVTVVLSNIRVIA 178 GLS + G RA T+ ++ S V G I P D+VD ++ + VV S I+V+A Sbjct: 108 GLSYKVSDGHRAVTVPVNNVSGVAGYILPGDYVDAIVTIESTEDEDTVTKVVESKIKVLA 167 Query: 179 IDH-NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 ++ D L+ T TL+ A++ A L LVLR + + N Sbjct: 168 SGQYTVEQDREQLIVETVTLDTPADAVTAIIQASERGSLRLVLRPVEESN 217 >gi|288956968|ref|YP_003447309.1| pilus assembly protein [Azospirillum sp. B510] gi|288909276|dbj|BAI70765.1| pilus assembly protein [Azospirillum sp. B510] Length = 288 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 18/237 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MKL + + + A+V G++ V + ++ DL G Sbjct: 1 MKLGTVFLGIAAVSMAVVGGLMVQAAVG-----ARGAPAAVEIPQRRIAVAAADLPAGSF 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + P + W AFPE + + V + + L G +VR + G+ I ++L+ G Sbjct: 56 LQPMSVRWEAFPENALRPETL--VEGKDNIDSLVGAVVRDAVKAGEIISRDRLLSPRERG 113 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNIR 175 L+++L G RAA++ ++ S G+I P DHVD+++ + ++ +L N+R Sbjct: 114 FLAAVLAPGMRAASVAVNEVSGTAGLIFPGDHVDLLLTQEANDEGAARRLATETILDNLR 173 Query: 176 VIAIDHNID------SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 V+A+D D + V T TLE+T QA+ + A ++ KL+L LRS+A Sbjct: 174 VLAVDQRTDFPKGEEPGQTARVARTVTLEVTAKQAQVISVAANLGKLTLSLRSLASA 230 >gi|188586926|ref|YP_001918471.1| Flp pilus assembly protein CpaB [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351613|gb|ACB85883.1| Flp pilus assembly protein CpaB [Natranaerobius thermophilus JW/NM-WN-LF] Length = 233 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 18/237 (7%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVGM 59 KL + G++VS + A+V +I + +S E + V+++ +L G Sbjct: 3 KLKKYRGLLVSLILAIVTVLIIHQYISSLETAYEGTGPREIDGEDQVAVVVATSNLDTGT 62 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 ++T + L+ PE+ + D +E+ G +++ +++ + + +++ Sbjct: 63 ILTQDHLDTRKVPEQTAHPQAVTD------KEEITGEVLKQDVVEHEVLMSSRVLGEEEA 116 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVL 171 LS ++P+ KRA ++ + S V G I+ D+VDVV + +R+ + ++L Sbjct: 117 NKLSEVIPENKRAMSVAVDQVSGVAGFIQAGDYVDVVATKDEEDREGQEPSQDSSSEIIL 176 Query: 172 SNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 N++V+A+ I E V ST TL + +A L A+ + L+L+ I + Sbjct: 177 DNLQVLAVGDRILYSRQELVQEVSTVTLAVNRNEATELTHAEEEHVIRLLLQPITEN 233 >gi|327540753|gb|EGF27320.1| Pilus assembly, Flp-type CpaB [Rhodopirellula baltica WH47] Length = 403 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 103/241 (42%), Gaps = 20/241 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++++ V +A I + + + ++ + + ++ + + Sbjct: 30 MRNKSVF-LILACVCGTIAAIGVSQWMQ------AQSTGQSSVATVEIFVTAKTIDIAEE 82 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + + +P + V G +++++G R +G+P+ KL+ NG Sbjct: 83 ITADKIRLEQWPADRVPTGA------SGKLEDVEGKFARQRFYEGEPVMPVKLMADANGS 136 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIA 178 S +P G +M S+V +++P D VDV+ SE + T VL+ +RV A Sbjct: 137 -SQTIPVGFSVVSMRADPESSVATLVRPGDRVDVMAYFVKSELIPETTAKTVLTGVRVFA 195 Query: 179 ID----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 +D +DS+ + +L + A A + K+ L L + +D+N + ++ Sbjct: 196 VDGRTEREVDSEAEAKPARSISLLIHKKDTPAWTYASELGKIRLTLGNPSDINETKDGET 255 Query: 235 D 235 D Sbjct: 256 D 256 >gi|307726634|ref|YP_003909847.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] gi|307587159|gb|ADN60556.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] Length = 365 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 104/264 (39%), Gaps = 31/264 (11%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVTPN 64 + + + A + + ++ + ++ I N + V++ DL G ++ + Sbjct: 15 WVLLFAAVCVAGGLTFLLYKYLNEREARLKQQIAANKVHDAVQVVVPARDLPAGTPLSSS 74 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 + V+D I P+ ++ + P+ +G P+R + S + Sbjct: 75 DFVSREIQGDLVYDDMIR----PDNFEQYRTSHLVKPVRRGLPLRAGDIDALRGRDFSDI 130 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSNIRVIA 178 LP G+RA T++I ++ +++P + VDV + S+ + +++ N+ V+A Sbjct: 131 LPAGQRAVTVEIDTVNSTALLVRPGNRVDVYWIGKAFHQDRTSDDQRVAQLIMPNVLVLA 190 Query: 179 IDH--------------------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 + S ++ + +T TL++ A + AQ + L L Sbjct: 191 TGQDLRPRDAGEASEQDQANANSSAMSRQQGMGYTTVTLQVPAEDAGRIALAQKIGGLRL 250 Query: 219 VLRSIADLNPSSSEDSDVWDVQEE 242 +LR+ D + ++ DV + Sbjct: 251 ILRNADDKASAGPVLTEEQDVFAD 274 >gi|296134297|ref|YP_003641544.1| Flp pilus assembly protein CpaB [Thermincola sp. JR] gi|296032875|gb|ADG83643.1| Flp pilus assembly protein CpaB [Thermincola potens JR] Length = 257 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 100/264 (37%), Gaps = 43/264 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + V+ AL+ + + V+++ ++ V Sbjct: 1 MSNKKI--LFVAVFLALLTTLAMNYYLEQVKKAATN------VTTKKVVVANVNIPARTV 52 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 +T +++ PEE V + D +++ G + I G+ + EK++ + Sbjct: 53 ITGDMVSVKDVPEEFVHPNAVLDE------EQVIGFVSGSDISAGEQVLREKILRKEGNP 106 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------------RSLSERKPT 166 LS +P G RA ++ I+ + VGG+++P D VDV+ ++ + Sbjct: 107 VSLSYQVPLGSRAMSVPINEVTGVGGLVRPGDRVDVIGTIELETSNPASNQQTGPTQTTV 166 Query: 167 VTVVLSNIRVIAIDHN---------------IDSDERVLVGSTATLELTPMQAKALVAAQ 211 V+L N+ V+A+ N +++ TL + + +AL Sbjct: 167 AHVLLQNVEVLAVGDNFTPATNRAVNQGKEDAKNNQSDTGAKNVTLAIPADKMQALTLML 226 Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235 K++L LRS D + D Sbjct: 227 DHGKVTLALRSPLDQSRYDRPPFD 250 >gi|330811038|ref|YP_004355500.1| hypothetical protein PSEBR_a4092 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379146|gb|AEA70496.1| Hypothetical protein; putative exported protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 271 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 16/227 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M L I +S V L A +A +S + +V+++ ++ G + Sbjct: 1 MSSRTLPLIGISLVMGLGAAWMADSWLS------ARLNATPDDHLRSVVVATVEIPFGQM 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 V + V P + + D ++ ++ G + IL+GD +R +L + G Sbjct: 55 VEAQQVTTVRMPMDTIPDDAF------DSSEQAVGKIATFDILRGDIVRGARLSEHLGGS 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRVI 177 L+SL+ KRA ++ + VGG + P + VDV+ ++ + T +L N+RV+ Sbjct: 109 TLASLIAPDKRAISVRVDDVVGVGGFLLPGNRVDVLATKTTNAGSNSATSRTLLENLRVL 168 Query: 178 AIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 A+D +D + +V TLE++ +A+ LV AQ+ KL L LR+ Sbjct: 169 AVDQTAGTDKTQPVVVRAVTLEMSATEAELLVTAQTEGKLQLALRNP 215 >gi|32473552|ref|NP_866546.1| pilus assembly protein CpaB [Rhodopirellula baltica SH 1] gi|32398232|emb|CAD78327.1| probable pilus assembly protein CpaB [Rhodopirellula baltica SH 1] Length = 403 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 103/241 (42%), Gaps = 20/241 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++++ V +A I + + + ++ + + ++ + + Sbjct: 30 MRNKSVF-LILACVCGTIAAIGVSQWMQ------AQSTGQSSVATVEIFVTAKTIDIAEE 82 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + + +P + V G +++++G R +G+P+ KL+ NG Sbjct: 83 ITADKIRLEQWPADRVPTGA------SGKLEDVEGKFARQRFYEGEPVMPVKLMADANGS 136 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIA 178 S +P G +M S+V +++P D VDV+ SE + T VL+ +RV A Sbjct: 137 -SQTIPVGFSVVSMRADPESSVATLVRPGDRVDVMAYFVKSELIPETTAKTVLTGVRVFA 195 Query: 179 ID----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 +D +DS+ + +L + A A + K+ L L + +D+N + ++ Sbjct: 196 VDGRTEREVDSEAEAKPARSISLLIHKKDTPAWTYASELGKIRLTLGNPSDINETKDGET 255 Query: 235 D 235 D Sbjct: 256 D 256 >gi|144898050|emb|CAM74914.1| Flp pilus assembly protein CpaB [Magnetospirillum gryphiswaldense MSR-1] Length = 288 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 64/279 (22%), Positives = 116/279 (41%), Gaps = 21/279 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ ++V+ + A + ++A R V + VL+ D+A G Sbjct: 1 MRPLAIVLVIVAVLAAGLTALLAKRWTDKQSTARPTVAA----DSVEVLVLARDVATGSA 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGNG 119 ++ L + +P N F+ + G + R P+ +G+P G+G Sbjct: 57 LSDADLRYENWPAVNA-GRFMTRKDGDDPKARAIGAVARRPLSEGEPFTPSATFTRDGSG 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-------------KPT 166 L+ +L G RA ++ IS +SAV G + P D VDVV+ + Sbjct: 116 ILAGMLAPGMRAVSVAISNASAVSGFVVPGDRVDVVLAADFQRADSEAAGKGGGAIVRYA 175 Query: 167 VTVVLSNIRVIAIDHN--IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 VL++++V+A+D D + G TATLE++P QA+ LV A + +LSL+LR + Sbjct: 176 AETVLADVKVLAVDQQFSKGKDGPTIQGKTATLEVSPDQAEILVTAGLMGQLSLILRGVG 235 Query: 225 DLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEGIS 263 + + + ++ + G S Sbjct: 236 PQDAGNQTKRPFTADTQASAAMRALAGGSAKPAAKSTGS 274 >gi|302037440|ref|YP_003797762.1| pilus assembly protein CpaB [Candidatus Nitrospira defluvii] gi|300605504|emb|CBK41837.1| Pilus assembly protein CpaB (modular protein) [Candidatus Nitrospira defluvii] Length = 403 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 115/253 (45%), Gaps = 22/253 (8%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 L+ + + G+ L + A + + + + E ++ I + ++ DLA G V+ Sbjct: 5 RRALIVVALGGLIGLATSLWAYQWLQDV-TEQTRLDMEAKSRTIPIAVAAADLAWGAVLA 63 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGNGG 120 + + V FP + V +G + + L G +V + + + +PI KL +GG Sbjct: 64 DDAVRMVPFPADTVPEGHFA------SAETLKGRVVIMDVKQHEPILESKLAPATVTSGG 117 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIA 178 ++++ KRA + + AVGG IKP D VDV+ R P VVL N+RV+A Sbjct: 118 VAAVTHPEKRAVAVKVDDVVAVGGFIKPGDRVDVLTTVRRPGKTDDPVTKVVLENVRVLA 177 Query: 179 IDHNID-----------SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 + + + + ++ V S TLE+ P +A+ L A + K+ L LR+ + Sbjct: 178 MGQDTERAAQTDKAAKNQETKLSVPSVMTLEVAPDEAEKLALASTEGKVQLALRNPQSVT 237 Query: 228 PSSSEDSDVWDVQ 240 ++ + + + Sbjct: 238 AVATTGATISSLL 250 >gi|42521753|ref|NP_967133.1| putative flp pilus assembly protein CpaB [Bdellovibrio bacteriovorus HD100] gi|39574283|emb|CAE77787.1| putative flp pilus assembly protein CpaB [Bdellovibrio bacteriovorus HD100] Length = 301 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 100/259 (38%), Gaps = 31/259 (11%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 ++ AG+ A L+ + + + + V+++K D+A + ++E P + Sbjct: 11 LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTIYDTMVETKELPAD 70 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAAT 133 + I E+ G + VPI KG + L+ + G+S + KRA T Sbjct: 71 FIQPDAITIPD------EIIGNVAAVPIRKGQMVVKNNLLTPGPDTGISLQVAPSKRAVT 124 Query: 134 MDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIRVIAIDHNIDSD---- 186 + + V +I+P D +D+ ++ V +++++ V+A ++ ++ Sbjct: 125 IPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNIPRM 184 Query: 187 ---------------ERVLVGSTATLELTPMQAKAL--VAAQSVAKLSLVLRSIADLNPS 229 +T T+E TP +A+ L + + + L + LR+ +D Sbjct: 185 FELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDRTIP 244 Query: 230 SSEDSDVWDVQEEGKEIQI 248 S D + + Sbjct: 245 PRMPSSTSDSVLGKPMVSV 263 >gi|121534342|ref|ZP_01666166.1| SAF domain [Thermosinus carboxydivorans Nor1] gi|121307112|gb|EAX48030.1| SAF domain [Thermosinus carboxydivorans Nor1] Length = 286 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 102/232 (43%), Gaps = 23/232 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MKL+ + ++ V +L + + + E + P + + V+++K D+ Sbjct: 1 MKLSTKGVLAIALVLSLATTGLIYKYLQ-------EATQKTPQEGVVVVVAKVDIPPKTK 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 +T ++ P E V G + + ++ G + R I+ G+ I +LV + + Sbjct: 54 ITAEMVATAKVPAEYVQPGAVRE------LKTAVGAIAREHIVAGEQIAERRLVIQGKSA 107 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIA 178 G + ++P KRA T+ ++ + V G +KP D+VDVV + ++L N+ V+A Sbjct: 108 GFTGIIPPDKRAVTIAVTEVTGVAGFVKPGDYVDVVATFDQNTVGDNVSQIILQNVLVLA 167 Query: 179 IDH--------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 + + + +T TL +TP + L A+ K+ L LR Sbjct: 168 ANRDAEAGAADGAKDKKEAIKTATVTLAVTPDEVAQLALAEDKGKVRLALRP 219 >gi|76663414|emb|CAE47790.1| pilus assembling protein [Bdellovibrio bacteriovorus] Length = 302 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 100/259 (38%), Gaps = 31/259 (11%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 ++ AG+ A L+ + + + + V+++K D+A V ++E P + Sbjct: 11 LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTVYDTMVETKELPAD 70 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAAT 133 + I E+ G + VPI KG I L+ + G+S + KRA T Sbjct: 71 FIQPDAITVPD------EIIGNVAAVPIRKGQMIVKNNLLTPGPDTGISLQVAPSKRAVT 124 Query: 134 MDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIRVIAIDHNIDSD---- 186 + + V +I+P D +D+ ++ V +++++ V+A ++ ++ Sbjct: 125 IPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNIPRM 184 Query: 187 ---------------ERVLVGSTATLELTPMQAKAL--VAAQSVAKLSLVLRSIADLNPS 229 +T T+E TP +A+ L + + + L + LR+ +D Sbjct: 185 FELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDRTIP 244 Query: 230 SSEDSDVWDVQEEGKEIQI 248 S D + + Sbjct: 245 PRMPSSTSDSVLGKPVVSM 263 >gi|148261012|ref|YP_001235139.1| SAF domain-containing protein [Acidiphilium cryptum JF-5] gi|326404412|ref|YP_004284494.1| putative pilus assembly protein [Acidiphilium multivorum AIU301] gi|146402693|gb|ABQ31220.1| SAF domain protein [Acidiphilium cryptum JF-5] gi|325051274|dbj|BAJ81612.1| putative pilus assembly protein [Acidiphilium multivorum AIU301] Length = 275 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 16/240 (6%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M + ++ L G+ V+ + + P K + +L + LA G ++ P Sbjct: 1 MLLRIALFILLALGLAGFGTVAWLDMHPSHPHAKAP-KMVALLATGRPLAPGTLLQPADF 59 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLL 125 P V + P G +VR + GD + + ++ G+ G L+++L Sbjct: 60 VAENRPPSKVPADAV--PDTPANRAAYTGAMVRHRLSAGDLLATDIVIRPGDHGFLAAVL 117 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVLSNIRVIAI 179 G RA ++ + + G+I P DHVD+++ + L+ ++ VLS++RVIAI Sbjct: 118 QPGMRAVSVGVDAITGAAGLIWPGDHVDLLLTQHLTGANLLPTQRVAAETVLSDVRVIAI 177 Query: 180 DHNIDSDERVL------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 D + T TLE+TP QA+ + A + LSL++R + + Sbjct: 178 DQRLVQGASGTHPAAKNTARTVTLEVTPEQAERVEVAAHLGPLSLIVRPSEAARGPTPKP 237 >gi|315497466|ref|YP_004086270.1| flp pilus assembly protein cpab [Asticcacaulis excentricus CB 48] gi|315415478|gb|ADU12119.1| Flp pilus assembly protein CpaB [Asticcacaulis excentricus CB 48] Length = 304 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 68/276 (24%), Positives = 112/276 (40%), Gaps = 45/276 (16%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 M + A + VL++ L VG + L W A+PE+ + + + Sbjct: 25 GMIGGNGASNANASQKVAVEAPTVKVLVAARHLKVGERIAEADLAWKAWPEDGITESYFT 84 Query: 83 DV-------------------------------------HQPNAMQELDGVLVRVPILKG 105 D + M + G +VR +L Sbjct: 85 DKPVTPVAPAEAKSAEDKALEEKVKNGAAQVADVADKTLNPTRGMDAVLGGVVREEMLAN 144 Query: 106 DPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 +PI K+V GG ++ +L G RA + +++ S GG I P D VD+V+ L Sbjct: 145 EPIVARKVVRADAGGFMAVMLAPGMRAMAVPVTVESTAGGFILPGDRVDIVVSTELQSNG 204 Query: 165 PTV---TVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 T VL N++V+A+D SD+ ++G+TATLE+ P + +AL A++ LSL+ Sbjct: 205 QTTHVAKPVLRNVKVLAVDQTVEAKSDQPSVIGATATLEVRPEEGEALAQAKAQGPLSLM 264 Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIV 255 LRS AD+ S G ++ + + G Sbjct: 265 LRSYADVGGPSGRVG--PSATGTGNKVVVYRNGQGT 298 >gi|312883753|ref|ZP_07743472.1| Flp pilus assembly protein CpaB, putative [Vibrio caribbenthicus ATCC BAA-2122] gi|309368502|gb|EFP96035.1| Flp pilus assembly protein CpaB, putative [Vibrio caribbenthicus ATCC BAA-2122] Length = 279 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 21/227 (9%) Query: 20 GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79 IA+ L++P Q E+ F VL++K + VG T N+ +W E+ + + Sbjct: 16 VGIAILLLNPSKPQFEQSQAAAEI-FKRVLVAKQRVVVGQPYTLNMFQWEKVSEQELSNY 74 Query: 80 FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISI 138 + + +L + I G + + G ++ + G RA ++ + Sbjct: 75 LDFISEEDFSRLDLKSGIAHTAIQSGQVMSKDDFETPNGGISMAFKVQNGHRAISVPVDA 134 Query: 139 SSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAIDHNIDSDE-- 187 +A G ++P D VD++++ S E VT + N+RV+A + D + Sbjct: 135 VTANSGFVQPGDKVDILLLGSQVEELKKYDNQVAGLYVTTIAVNVRVLAFNQYADPQDFQ 194 Query: 188 --------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 + S+ +LE+TP QA +V A + KL+L LR + Sbjct: 195 KNRSAYGADIPDNSSVSLEVTPEQATQIVLANQIGKLTLSLRGAGEA 241 >gi|121607247|ref|YP_995054.1| SAF domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121551887|gb|ABM56036.1| SAF domain [Verminephrobacter eiseniae EF01-2] Length = 306 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 97/226 (42%), Gaps = 8/226 (3%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 Q + + + I +L++K +L G ++ + P + I P Sbjct: 39 SRQVAAIEARSKKETIALLVAKRELKKGDLLATGNVAVREIPLDYAHSNAI----APEHF 94 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 + ++G + + G+ + + R S+ + G+RA T+ + +++ G+++P D Sbjct: 95 ERIEGQGIEHGLKAGEMLLWSLMQTRKAATFSARIEIGRRAITVHVDEINSISGLLEPGD 154 Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD---ERVLVGSTATLELTPMQAKAL 207 +D+++ K +L N++V+A D ST TL+ T QA+++ Sbjct: 155 AIDLMVTLDR-GGKKITFPLLQNVQVMATGQRSADDPKSGERRQYSTVTLDTTQAQAQSV 213 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253 + A+ K++ +LR+ D + + + + + + + Q + G Sbjct: 214 IVAREAGKITALLRNPQDTQVQAGDSAAIAALLGQAGDAQSLADGA 259 >gi|329847252|ref|ZP_08262280.1| flp pilus assembly protein CpaB [Asticcacaulis biprosthecum C19] gi|328842315|gb|EGF91884.1| flp pilus assembly protein CpaB [Asticcacaulis biprosthecum C19] Length = 311 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 123/306 (40%), Gaps = 50/306 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT--ENPAKFINVLISKGDLAVG 58 MK +R + + V+ + A++ + +++ Q + VLI+ +L G Sbjct: 1 MKASRYVVMGVAAIAAILLAFLVRGMIAGGGAQEAKATVDKTPAVATARVLIAARELKAG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNA----------------------------- 89 ++ L W +P ++ +I D P Sbjct: 61 TRISEADLTWQEWPVASLNAAYIVDGGMPAGAPGMEGAAKPAADKPKSDVEEKVGDVTQA 120 Query: 90 ----------MQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISI 138 + G + R IL +PI K+V GG ++ +L G RA + +S+ Sbjct: 121 VADKIAPSPTKEAYVGGVAREDILANEPIIDAKIVRSDEGGFMAVMLQPGMRALAVPVSV 180 Query: 139 SSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVVLSNIRVIAIDHN--IDSDERVLV 191 + GG I P D VD+++ +V VL NIRV+AID + + D++ ++ Sbjct: 181 DNTAGGFILPGDRVDILVTHQLPSATGRGTIDSVQPVLRNIRVLAIDQSVAAEQDKQTVI 240 Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK-EIQIIK 250 G+TATLE++P + + A++ LSL+LRS AD S + +++ + Sbjct: 241 GATATLEVSPGDGQVVTLAKASGTLSLMLRSYADAQGPSGAVTTSPTGGASEDLPVRVYR 300 Query: 251 AGVIVN 256 G Sbjct: 301 NGQATE 306 >gi|332188388|ref|ZP_08390113.1| flp pilus assembly protein CpaB [Sphingomonas sp. S17] gi|332011617|gb|EGI53697.1| flp pilus assembly protein CpaB [Sphingomonas sp. S17] Length = 329 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 67/274 (24%), Positives = 116/274 (42%), Gaps = 18/274 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRL---VSPHHVQTEEVITENPAKFINVLISKGDLAV 57 M +L+ +V + + A + + A L ++ P VL++ L V Sbjct: 1 MDSRKLLLLVGALLVAGMTAVFARTLTAGSGAPQAGAAVIVAPPPETGPEVLVATRALPV 60 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G ++ L++ +P+E V + + +L G +VR I G P+ +V G Sbjct: 61 GTIIDATALKFQPWPKEMVGGAYYLKGQA--DLAKLQGTVVRYAITAGQPLTQGAVVQPG 118 Query: 118 N-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVL 171 + G L++ L G RA T+ +S + V G + P D +D+V+ + ++ +L Sbjct: 119 DRGFLAAALTPGMRAVTVPVSAQTGVAGFVFPGDRIDMVLTQDVAGGGDGPPLKVSETIL 178 Query: 172 SNIRVIAIDHNIDSDERVLVG------STATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 N+RV+A D DS +T T+E TP A+ L AQ+V LSL LR++AD Sbjct: 179 RNVRVLATDQRTDSQSGEDGKTPIQTFTTVTVEATPKMAEQLAVAQTVGTLSLSLRALAD 238 Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259 P ++ + + G I Sbjct: 239 R-PDDLQNPAAVNAGPVADRASYVTGGDISRYQR 271 >gi|242315438|ref|ZP_04814454.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] gi|242138677|gb|EES25079.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] Length = 366 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ + + + A+V + L +V + P + + V ++ DL G+++ Sbjct: 1 MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104 L W G + + +L G L+R P+ Sbjct: 57 DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116 Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176 Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209 +R + + +RV+A+ D+ + T T E++ A+ + Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236 Query: 210 AQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 237 GAHLGALSLALRSFA 251 >gi|115376401|ref|ZP_01463638.1| Flp pilus assembly CpaB, putative [Stigmatella aurantiaca DW4/3-1] gi|310822673|ref|YP_003955031.1| Flp pilus assembly protein CpaB [Stigmatella aurantiaca DW4/3-1] gi|115366608|gb|EAU65606.1| Flp pilus assembly CpaB, putative [Stigmatella aurantiaca DW4/3-1] gi|309395745|gb|ADO73204.1| Flp pilus assembly protein CpaB [Stigmatella aurantiaca DW4/3-1] Length = 270 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 102/232 (43%), Gaps = 12/232 (5%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 V+ ++ +E + V+++ D+ G V++ ++ + PE+ V + Sbjct: 21 VAYSAIKKKEADVRRGWNLVPVVVAAQDIPEGSVISFEMISQRSVPEQFVTSSVVK---- 76 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGM 145 P++ + V VP+ GDP+ + LS+ + K RA T++ +++VGG Sbjct: 77 PDSANYVVNQKVLVPLQAGDPLLWSQFETTKAAERLSTKVQKKGRAVTIEAKSTTSVGGW 136 Query: 146 IKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAIDHNIDSD------ERVLVGSTATLE 198 I+PNDHVDV+ + + +L N+ V+A + E S +L Sbjct: 137 IRPNDHVDVIGTFRDPQTDENVAVTLLQNVIVLATGKITGTTNVNLIPENQRDYSNISLL 196 Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 + P +A+ LV A + L+L LR+ D++ G+ ++++ Sbjct: 197 VIPEEAEILVLASELGNLTLSLRNEDDVDLIEERGRATISTLLSGERTRVLE 248 >gi|319783875|ref|YP_004143351.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169763|gb|ADV13301.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 301 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 106/269 (39%), Gaps = 25/269 (9%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQ-------TEEVITENPAKFINVLISKGDLAVGMV 60 I ++ VF ++ A V + +F ++++ L GM Sbjct: 1 MIGIAAVFGAISIFAADFWVKSQAKADSEEKTSSIPAPVVPKVEFKTIVVANAPLRYGME 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + L + + +E+V G ++ A +V PI +P+ L KL Sbjct: 61 LDRAQLSEIPWSQESVPQGAFTTINALLADGS---RVVLSPIEVNEPVLLTKLSGPNGRA 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-------------ERKPT 166 LS+++ G RA T+ + VGG + P D VDVV+ R T Sbjct: 118 TLSNMMTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQGAAGSTIT 177 Query: 167 VTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +V+++ +V+++ D + + ++ T+E+T A+ + A++V LSL LRS ++ Sbjct: 178 SEIVVADAKVLSVGQGADERQTTPQISNSVTIEVTTDGAQKVALARTVGTLSLSLRSASE 237 Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKAGVI 254 S + + AG + Sbjct: 238 GADGKSGVTTISSFGGSVASNVQAAAGSV 266 >gi|323529160|ref|YP_004231312.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] gi|323386162|gb|ADX58252.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] Length = 363 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 97/262 (37%), Gaps = 31/262 (11%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF-INVLISKGDLAVGMVVTPN 64 + + V+ A + + ++ + + I N + I V++ DL G ++ + Sbjct: 15 WVLLFVAVCVAGGLTFLLYKYLNERETKLKAEIAANKVRTDIAVVVPARDLPAGTPLSSS 74 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 + V+D + P + + P+ +G P+R + S + Sbjct: 75 DFVSREIQGDLVYDDMVR----PENFDQYRASHLVKPVRRGLPLRAADIDALHGRDFSDV 130 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSNIRVIA 178 LP G+RA T++I ++ +++P + VDV + S+ + +++++ V+A Sbjct: 131 LPAGQRAVTVEIDTVNSTALLLRPGNRVDVYWIGKAFHQDHTSDDRRVAQLMMADALVLA 190 Query: 179 IDHNIDSDERVLVG--------------------STATLELTPMQAKALVAAQSVAKLSL 218 ++ + +T TL++ + AQ + L L Sbjct: 191 TGQDLRPRDAGEAAEHDQANANSSAMSRQEGMGYTTVTLQVPAEDVGRIALAQKIGGLRL 250 Query: 219 VLRSIADLNPSSSEDSDVWDVQ 240 +LR+ D + DV Sbjct: 251 ILRNADDKATGGPALVEEKDVF 272 >gi|294102190|ref|YP_003554048.1| Flp pilus assembly protein CpaB [Aminobacterium colombiense DSM 12261] gi|293617170|gb|ADE57324.1| Flp pilus assembly protein CpaB [Aminobacterium colombiense DSM 12261] Length = 288 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 113/240 (47%), Gaps = 20/240 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R + ++VS + ++AG++ + + + ++ I + ++V+++ + Sbjct: 1 MK-KRGIFLIVSLLLGIMAGLLVYQQIRSYKLK----IARAERELVSVVVAARPKDAFSI 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNG 119 +T ++ V P ++ G + ++ E+ G + + +GDP+ KL +D Sbjct: 56 ITAEDVKVVRMPRSSIPTG------EVLSLDEVVGKASMLALSEGDPVLKGKLSLDPEKL 109 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-KPTVTVVLSNIRVIA 178 G++ LP G+ A + I A GG+++P D+VDV V + PT ++LS ++V+A Sbjct: 110 GVAFQLPDGRVAIALPIDEVIAAGGLLRPGDYVDVFHVYREKDAVSPTSRLLLSRVKVLA 169 Query: 179 IDHNIDSDERVLV-------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 + + E +A +E++P +A AQS+ + L LR + + + Sbjct: 170 LGGVLTRKEEKEGTKEKEMLARSAVVEVSPEEAAVAAWAQSLGSVWLALRPANEETLTPA 229 >gi|296158513|ref|ZP_06841343.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] gi|295891081|gb|EFG70869.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] Length = 365 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 99/287 (34%), Gaps = 44/287 (15%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQ-TEEVITENPAKFINVLISKGDLAVGMVVTPN 64 + + ++ + A + + ++ + ++ + V++ D VG ++ Sbjct: 15 WVLLFLAVLVAGGLTFLLYKYLNDREKKLKADLDAHRVRAGVTVVVPAQDAPVGTPLSSG 74 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 + V+D I + ++ + P+ +G P+R + S + Sbjct: 75 NFVAREIAGDLVYDDMIR----ADGFEQYRSSHLVKPVRRGLPLRAGDIDALRGRDFSDI 130 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------LSERKPTVTVVLSNIRVIA 178 L G RA T++I ++ +++P + VDV V S+ K +V+ N+ V+A Sbjct: 131 LRPGTRALTVEIDTVNSTALLLRPGNRVDVYWVGKVFHENRTSDEKKVAQLVMPNVLVLA 190 Query: 179 IDHNIDSDERVLVG--------------------STATLELTPMQAKALVAAQSVAKLSL 218 ++ + +T TLE+ + AQ + L L Sbjct: 191 TGEDMRPRDAGEAAQQDQANANSSAMSRQTGMGYTTVTLEVPVDDVARIALAQKIGGLRL 250 Query: 219 VLRSIADLNPSSSEDSDVWD-------------VQEEGKEIQIIKAG 252 +LR+ D + D + +++I G Sbjct: 251 ILRNSEDKGADGPSLAQESDVFIDPARGHVTSGTGPAPQTVEVISGG 297 >gi|148253053|ref|YP_001237638.1| hypothetical protein BBta_1513 [Bradyrhizobium sp. BTAi1] gi|146405226|gb|ABQ33732.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 309 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 100/245 (40%), Gaps = 20/245 (8%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 + S + V+ + VL++ +A+G ++ + W V G++ Sbjct: 22 FIAWFSQMRSRPVAVVERSVESRPAVLVAARTIALGTLLRKEDIAWKDVMPGEVRPGYLM 81 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSA 141 + E G + R + +P+ + V G+ L+++L G RA ++ + + + Sbjct: 82 RGQ--VSEAEFLGAISRRNFAQDEPLIASEFVKPGDRQFLAAVLKPGSRAISIFVDAAQS 139 Query: 142 VGGMIKPNDHVDVVMVRS------LSERKPTVTVVLSNIRVIAIDHNIDS--------DE 187 GM P D VDV++ +S RK +L ++RVIAID ++ Sbjct: 140 AAGMALPGDRVDVILTQSFGEQATDPGRKTVSETMLRDVRVIAIDQSLTPSTNVAAAIST 199 Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLV---LRSIADLNPSSSEDSDVWDVQEEGK 244 + T TLEL QA+AL+ A + K L L +A +P ++ + Sbjct: 200 EARIPKTVTLELLERQAEALMVAAQLGKFQLAVLPLERVAVEHPEEQTEAGPVWASDVSP 259 Query: 245 EIQII 249 ++ + Sbjct: 260 ALREV 264 >gi|162147490|ref|YP_001601951.1| pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5] gi|209545597|ref|YP_002277826.1| Flp pilus assembly protein CpaB [Gluconacetobacter diazotrophicus PAl 5] gi|161786067|emb|CAP55649.1| putative pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533274|gb|ACI53211.1| Flp pilus assembly protein CpaB [Gluconacetobacter diazotrophicus PAl 5] Length = 292 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 32/271 (11%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64 R++ IVV+ + I+ + +TE + VL+++ G ++ Sbjct: 4 RILLIVVAVSGLIGVVILGRLALHSGEKPVVAQVTEKKVPTVGVLVARKAEPAGALLQSG 63 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSS 123 L+ FP V G I DV P+ L G L+RVP+ +G + E ++ +G L++ Sbjct: 64 DLQTKDFPANLVPPGAIHDV--PSERAALTGGLLRVPVPEGGLLTNEAVLRVGDHGFLAA 121 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-------------------- 163 +L G A ++ + S V +I+P D+VD+++ ++ Sbjct: 122 VLKPGDSAVSVGVDSVSGVADLIEPGDYVDLIVTHDVATADVANSGGGAGGNPGGDAGGG 181 Query: 164 KPTVTVVLSNIRVIAIDHNIDS----DERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + VLS +RV+AID + D R + T TLE+TP QA+A+ A + +L+L Sbjct: 182 RIAAETVLSALRVVAIDREMQHTSTVDSRGVGNRTVTLEVTPAQAEAVAVAGRLGRLTLA 241 Query: 220 LRSIADL-----NPSSSEDSDVWDVQEEGKE 245 +RS+ P ++ DV G E Sbjct: 242 VRSLDQAGVAAFAPHTTWGGDVSPALAHGPE 272 >gi|220918103|ref|YP_002493407.1| Flp pilus assembly protein CpaB [Anaeromyxobacter dehalogenans 2CP-1] gi|219955957|gb|ACL66341.1| Flp pilus assembly protein CpaB [Anaeromyxobacter dehalogenans 2CP-1] Length = 309 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 15/250 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R V V A++A + L++ + + V++++ D+ V + Sbjct: 17 RKRRAAWGVTFLVVAILAAVGVALLLTRYMDAR---VAAVRVPTSGVVVAQVDIPVATPI 73 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 P L V +P + G + L G + VPI +G+ + KL G G Sbjct: 74 KPEWLGVVPWPVTALPPGAASEPA------ALVGQVAIVPITRGEAVLPSKLATAGARSG 127 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-TVVLSNIRVIAI 179 L++LLP G RA + + V G + P D VDV++ E P +VL N++V+A+ Sbjct: 128 LATLLPAGMRAVAVRVDDVVGVAGFLHPGDRVDVIVTMQPREGVPYTSKIVLQNVKVLAV 187 Query: 180 DHNID----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 +++ E+ + ATL +T +++ L + S +L L LR++ D ++ Sbjct: 188 GQHLELRGKDAEKPNPVTVATLMVTGDESERLALSASKGQLLLSLRALGDEELVDTKGIT 247 Query: 236 VWDVQEEGKE 245 + + Sbjct: 248 PPVLFASAAQ 257 >gi|78486069|ref|YP_391994.1| Flp pilus assembly CpaB [Thiomicrospira crunogena XCL-2] gi|78364355|gb|ABB42320.1| Flp (type IV) pilus assembly protein CpaB homolog [Thiomicrospira crunogena XCL-2] Length = 296 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 104/266 (39%), Gaps = 36/266 (13%) Query: 1 MKLTR--LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN------VLISK 52 MKL + ++ + A++A ++ V + E + + ++++ Sbjct: 1 MKLKTSDWVVYGIAALSAILAIVLVYGYVQNRVAEAEANASTKTITVVEKPELHSIVVAS 60 Query: 53 GDLAVGMVVTPNILEWVAFP-EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 D+ G + + ++ + P E V G I + Q G + I G+ I + Sbjct: 61 RDIYRGEKIEADDVKVLNVPMEGLVVKGVIINP------QNAVGHVAHQKIYAGEWILAK 114 Query: 112 KLVDRGNG---GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-LSERKPTV 167 KL + +LL K +RA + I + + G+I P DHVDV+ V ++ Sbjct: 115 KLKLESQSRFQSVEALLEKTRRAIRLPIEPDTGLLGIISPGDHVDVISVFESADSKRMVS 174 Query: 168 TVVLSNIRVIAIDHNID-----------------SDERVLVGSTATLELTPMQAKALVAA 210 +L NI V++I + + S L++ QA+ L A Sbjct: 175 RTILQNITVLSIGIENQMRASTADSEEDNQNLFANKQASNKKSMVALDVDTTQAEKLALA 234 Query: 211 QSVAKLSLVLRSIADLNPSSSEDSDV 236 +V + L+LR+ AD ++ ++ Sbjct: 235 MNVGAIHLLLRNSADTELVDTKGVNL 260 >gi|78062907|ref|YP_372815.1| Flp pilus assembly CpaB [Burkholderia sp. 383] gi|77970792|gb|ABB12171.1| Flp pilus assembly CpaB [Burkholderia sp. 383] Length = 342 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 104/263 (39%), Gaps = 21/263 (7%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 +VA I ++ +V V ++ DL G+++ N L W P Sbjct: 7 LAVLVVAAGIGAFILRELYVAASTPSVATETDQARVRVAAADLPEGLLLRDNDLAWKRMP 66 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRA 131 V G + +L G L+R + G PIR+E ++ G L++ L G RA Sbjct: 67 RAQVPAGAFVESQ---PGADLKGALLRNHVGAGAPIRVENVIPAGAPDFLAAALQPGMRA 123 Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIRVIAIDHN---- 182 ++ + S G+I+P D VDV++ + + + V+ RV+A+ Sbjct: 124 ISVPVDDVSGNAGLIQPGDFVDVLLTQQIGGSATSPGTFEAETVVRRARVLAVGSEFQRA 183 Query: 183 ---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 + + T TLE+ P A+ ++ A + LSL LRS A + D Sbjct: 184 KAPASAPDATARARTVTLEVAPRTAQVVLVATRLGSLSLALRSFATSDRRQPAGGD---- 239 Query: 240 QEEGKEIQIIKAGVIVNKDGEGI 262 E+ + Q + AG + E Sbjct: 240 -EQEPDTQPVWAGDVSRAAREAA 261 >gi|115358170|ref|YP_775308.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD] gi|115283458|gb|ABI88974.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD] Length = 342 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 98/246 (39%), Gaps = 21/246 (8%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 L V+ + A I+ VS + + V ++ DL G+++ Sbjct: 2 PKPLRMAVLIIAAGIGAFILRQLYVSASTPPPPGNTAD-----VRVRVAAADLPEGLLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121 N L W V G + +L G L+R + G PIR + ++ G L Sbjct: 57 DNDLAWKPMARAQVPAGAFVESQ---PGADLKGALLRSRVEAGAPIRADNVISAGAPDFL 113 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIRV 176 ++ L G RA ++ + S G+I+P D VDVV+ + + T V+ RV Sbjct: 114 AAALQPGMRAISVPVDDVSGNAGLIQPGDFVDVVLTQQIGGSATTPGTFEAETVVRRARV 173 Query: 177 IAIDHN-------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 +A+ + + + T TLE+ P A+ ++ A + LSL LRS A + Sbjct: 174 LAVGSEFQRAKGPASAPDAPVRARTVTLEVAPRTAQVVLVATRLGSLSLALRSFATSDRR 233 Query: 230 SSEDSD 235 + D Sbjct: 234 QAAGGD 239 >gi|255658703|ref|ZP_05404112.1| Flp pilus assembly protein CpaB [Mitsuokella multacida DSM 20544] gi|260849090|gb|EEX69097.1| Flp pilus assembly protein CpaB [Mitsuokella multacida DSM 20544] Length = 358 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 96/248 (38%), Gaps = 43/248 (17%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 +V +GV +++ G++ +S + E + + V+ +K D+ VV ++L+ Sbjct: 24 VVAAGVVSILLGLMVYLAMSGDDQKAAE---KPQTNLVQVVAAKQDIPERTVVKEDMLKV 80 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPK 127 V P E V +G DV + I +GD + K+ VD G + ++P Sbjct: 81 VEVPSELVPEGAFHDVA------DAIDHPTSTAIQQGDIMTSRKVYVDIRMAGFTGIIPP 134 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE 187 RA T+ I+ + V G P D+VD++++ E ++L ++ ++ I+ D Sbjct: 135 DCRAVTIPINDVTGVSGFAHPGDYVDIMVITGTKENGINGRIILQDVLLLGINRTADLPN 194 Query: 188 RVLVGS---------------------------------TATLELTPMQAKALVAAQSVA 214 S TAT+ L P A L A Sbjct: 195 TPTGDSSKKDGSQSDKQDASSGTANVGSVNTKASSDTMATATVALKPADALKLAAESQEG 254 Query: 215 KLSLVLRS 222 L LVLR Sbjct: 255 TLYLVLRP 262 >gi|304311184|ref|YP_003810782.1| Flp pilus assembly protein [gamma proteobacterium HdN1] gi|301796917|emb|CBL45130.1| Flp pilus assembly protein [gamma proteobacterium HdN1] Length = 283 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 15/238 (6%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 + + Q + I + + I V+++ DL +G VVT P+ V Sbjct: 26 FLTQNYIKTEVTQRNKAIDQQR-EAIQVVVASADLNIGDVVTLKNAVVRDIPKTFVPSEA 84 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 + N L+G ++ + G+ I + G+ SLL G+RA T+ + Sbjct: 85 VT---PANFAATLEGRQLKYKVKYGEVILPMHVSSTKIEGIVSLLEPGERAITIPVGKED 141 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI---------DSDERVLV 191 + G ++P VD+ + L ++VIA + D + Sbjct: 142 TISGFLRPGSRVDLFLTLK-DGAVSRTAPFLQRVKVIATGTELNDGIPRELKDPKKLQKT 200 Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQII 249 S TL +TP+QA L+ +QSV +++VLR D + +D D + +++ + Sbjct: 201 FSDVTLAVTPVQATKLIHSQSVGDIAMVLRRPEDKSTE-FDDYATIDNLLDSRQVAPV 257 >gi|87199533|ref|YP_496790.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444] gi|87135214|gb|ABD25956.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444] Length = 260 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 13/217 (5%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 A ++++ + G +T +P V G ++ + Sbjct: 2 KRASLTRIVVASQAIEFGKPLTNTNTRLADWPAGTVPPGAFTNLA-----DAQRNRIAMQ 56 Query: 101 PILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 I G+PI ++ L++ LP G A ++ IS + V G ++P D VD+++ R Sbjct: 57 AIAAGEPILASRVTGTDGRATLAAALPPGMVAVSLPISDVTGVSGFVRPGDLVDIILTRQ 116 Query: 160 LSERKP-----TVTVVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSV 213 + V+L + V+ ID D S +VG TAT+++ + A+ L A+ + Sbjct: 117 IPGEGAGQQDKMTDVILRQVAVLGIDQVADKSKTEAVVGKTATVQVDTLGAQKLALAREL 176 Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 LSL LRS+A + + V G+++ I + Sbjct: 177 GTLSLGLRSLASVEDTGPT-RTVLARDLAGRQLFIAR 212 >gi|172062958|ref|YP_001810609.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] gi|171995475|gb|ACB66393.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] Length = 342 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 21/246 (8%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 L V+ + A I+ VS + + V ++ DL G+++ Sbjct: 2 PKPLRMAVLIIAAGIGAFILRQLYVSASTPPPPGNTAD-----VRVRVAAADLPEGLLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121 N L W + V G + +L G L+R + G PIR + ++ G L Sbjct: 57 DNDLAWKSMARAQVPAGAFVESQ---PGADLKGALLRNRVDAGAPIRADNVISAGAPDFL 113 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIRV 176 ++ L G RA ++ + S G+I+P D VDVV+ + + T V+ RV Sbjct: 114 AAALQPGMRAISVPVDDVSGNAGLIQPGDFVDVVLTQQIGGSATTPGTFEAETVVRRARV 173 Query: 177 IAIDHN-------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 +A+ + + + T TLE+ P A+ ++ A + LSL LRS A + Sbjct: 174 LAVGSEFQRAKGPASAPDAPVRARTVTLEVAPRTAQVVLVATRLGSLSLALRSFATSDRR 233 Query: 230 SSEDSD 235 + D Sbjct: 234 QAAGGD 239 >gi|108759025|ref|YP_632818.1| putative Flp pilus assembly protein CpaB [Myxococcus xanthus DK 1622] gi|108462905|gb|ABF88090.1| putative Flp pilus assembly protein CpaB [Myxococcus xanthus DK 1622] Length = 271 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 102/232 (43%), Gaps = 12/232 (5%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 ++ ++ +E + V+++ D+ G V+T ++ + PE+ V + Sbjct: 21 IAYSAIKKKEADVRRGWNLVPVVVAAQDVPEGTVITFEMISQRSVPEQFVTSSVVR---- 76 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGM 145 P++ + V V + GDP+ + LSS + K RA T++ +++VGG Sbjct: 77 PDSASYIVNQKVLVALQAGDPLLWSQFETTKAAERLSSKVQKKARALTIEAKHTTSVGGW 136 Query: 146 IKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAIDHNIDSD------ERVLVGSTATLE 198 I+PNDHVDV+ + + +L N+ V+A + E + +L Sbjct: 137 IRPNDHVDVIGTFRDPQTDENVAVTLLQNVIVVATGKITGTTNVNLIPENQREYNNISLM 196 Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 + P +A+ LV A + +L+L LR+ D++ G+ ++++ Sbjct: 197 VLPEEAEILVLAVELGQLTLSLRNEDDVDLIEERGRATISTLLSGERTRVLE 248 >gi|251789645|ref|YP_003004366.1| Flp pilus assembly protein CpaB [Dickeya zeae Ech1591] gi|247538266|gb|ACT06887.1| Flp pilus assembly protein CpaB [Dickeya zeae Ech1591] Length = 308 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 113/295 (38%), Gaps = 41/295 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK+ + + V+ + A V +I + Q P + VL++ DL+ G Sbjct: 1 MKINSTLLLSVALIAAGVMALIVRSQLPGTPAAQQTPAPAPIPVEKTAVLVTARDLSPGD 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 + + + W + + + +L G +R I G P+ +V Sbjct: 61 FIDGSAVRWQE--TDQPVSRTFYFIRGKDQESQLYGATLRGKIPAGTPLNNNSVVRPNEP 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------ 166 G ++++L G RA ++ S+ ++ G++ D+VD+++ + Sbjct: 119 GFIAAVLRPGMRAISIPTSVVASNAGLVSAGDYVDIILSLRRDDEVALQPTSQQPVPPPV 178 Query: 167 --VTVVLSNIRVIAIDHNIDS----------------------DERVLVGSTATLELTPM 202 V N+RV+A+++ D+ +R + + TLE TP Sbjct: 179 VGAQTVARNLRVLALNNQTDAITSMRPRQDINGAEPAQNTPQGRQRTPIYQSITLEATPK 238 Query: 203 QAKALVAAQSVAKLSLVLRSIADL-NPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256 QA+ L A+ V L + RS D + + ++ + G +++ +G V Sbjct: 239 QAEVLTVAKEVGLLQMAQRSALDTSDDAEAQTTVTTLKDTTGIYSKMVSSGHQVK 293 >gi|325111215|ref|YP_004272283.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM 5305] gi|324971483|gb|ADY62261.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM 5305] Length = 349 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 87/255 (34%), Gaps = 25/255 (9%) Query: 1 MK---LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 M+ + I++ + L+A I E V ++ D+ Sbjct: 1 MRVLTPAFITLIMLIVIGGLIAVYIGKSFF------YTEPAPPQEISTRLVPMAGSDIPA 54 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G ++T + + E+ + + + G I + PI L G Sbjct: 55 GTLITSDHIVRGRLREDKM------TRETILNDEAIIGRYSLTDIKQAQPILTSDLYAPG 108 Query: 118 NGGLSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVL 171 L G +A T+ + +S V G+I+P D+VDV + S R V Sbjct: 109 ERP-PLELEPGMQAVTVSLGDSTSVVDGLIEPGDYVDVHLTVSDDLSDSRYRGGFTMTVF 167 Query: 172 SNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 IRV+A++ +T T ELTP Q+ ++ AQ ++ S P Sbjct: 168 KGIRVLAMNRLTQPTNISRGANTVTFELTPSQSNIILEAQRHGTIT---VSYNPDGPGDG 224 Query: 232 EDSDVWDVQEEGKEI 246 + + EI Sbjct: 225 GVAVASSDRAYFDEI 239 >gi|76810330|ref|YP_333339.1| CpaB family Flp pilus assembly protein [Burkholderia pseudomallei 1710b] gi|76579783|gb|ABA49258.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei 1710b] Length = 348 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 94/269 (34%), Gaps = 27/269 (10%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + A++ GI A L + V+++ L G + + L Sbjct: 57 IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 116 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P G + + G + I P+ +L+ GL+ + Sbjct: 117 KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 164 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177 G+RA + + ++AVG ++P + VDV + + ++LS +RV+ Sbjct: 165 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 224 Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 + + TA L + Q AL A++ +L L LRS D + ++ Sbjct: 225 SFGDATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIAAQT 284 Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261 + + G Q V+ G G Sbjct: 285 VA-IRAPAGAGPSNQAATGLVLSELSGSG 312 >gi|91777218|ref|YP_552426.1| putative Flp pilus assembly CpaB [Burkholderia xenovorans LB400] gi|91689878|gb|ABE33076.1| Putative Flp pilus assembly CpaB [Burkholderia xenovorans LB400] Length = 363 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 99/273 (36%), Gaps = 31/273 (11%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ-TEEVITENPAKFINVLISKGDLAVGMVV 61 + + ++ + A + + ++ + ++ + V++ D+ VG + Sbjct: 12 ANSWVLLFLAVLVAGGLTFLLYKYLNDREKKLKADMDAHRVRAGVTVVVPAQDVPVGTPL 71 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + V+D I + ++ + P+ +G P+R + Sbjct: 72 SSGDFVAREIAGDLVYDDMIR----ADNFEQYRSSHLVKPVRRGLPLRAGDIDALRGRDF 127 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------LSERKPTVTVVLSNIR 175 S +L G RA T++I +A +++P +HVDV V S+ K +V+ N+ Sbjct: 128 SDVLRPGTRALTVEIDTVNATALLLRPGNHVDVYWVGKVFHEDHTSDEKKVAQLVMPNVL 187 Query: 176 VIAIDHNIDSDERVLVG--------------------STATLELTPMQAKALVAAQSVAK 215 V+A ++ + +T TLE+ + AQ + Sbjct: 188 VLATGEDMRPRDAGEAAQQDQANANSSAMSRQAGMGYTTVTLEIPVDDVARVALAQKIGG 247 Query: 216 LSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQI 248 L L+LR+ D + DV + ++ Sbjct: 248 LRLILRNSEDKGADGPSLAQESDVFIDPARGRV 280 >gi|296158793|ref|ZP_06841622.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] gi|295890998|gb|EFG70787.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] Length = 316 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 28/243 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + V ALV G+ A L +T V+++ LA G Sbjct: 1 MPNLTRIFAGVLIAVALVLGLFAWTLSRR---PAPVAVTPATHASFPVVVATRALAPGKP 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + L + P +G + +L G + I P+ +L + G Sbjct: 58 ITVDDLRIQSLPIN--PNGAFTEPA------QLAGRVPNAEIGADSPVLESQL----SSG 105 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVL 171 L+ + G+RA + + +AVG ++P + VDV + +++ Sbjct: 106 LAERVEAGERALAVRVDEGNAVGNRLRPGNFVDVFFTLKRDGGSMGNGGEIDRTQARLLM 165 Query: 172 SNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 S +RV+A + S + TA L + L A+S +L LR+ D Sbjct: 166 SKVRVLAFGNATASGDSAGDPNGMVRTAVLAVPVADVDRLTLAESAGRLIFALRNPKDTE 225 Query: 228 PSS 230 Sbjct: 226 VVD 228 >gi|87312293|ref|ZP_01094391.1| probable pilus assembly protein CpaB [Blastopirellula marina DSM 3645] gi|87284997|gb|EAQ76933.1| probable pilus assembly protein CpaB [Blastopirellula marina DSM 3645] Length = 363 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 92/194 (47%), Gaps = 13/194 (6%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 +A +S + T + N+ ++ D+ + ++P +++ +P++ V +G + Sbjct: 1 MASIGISQVLESKSQQSTAPQMEMENIFVAIEDIDINEQLSPELIKLEPWPKDKVPEGAV 60 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISS 140 + ++E++ RV + G+PI KL + G S ++PKG R ++ ++ + Sbjct: 61 TN------LEEIENRRPRVRLYAGEPILERKLFGSNEDKGASKMIPKGFRVHSVRVTAET 114 Query: 141 AVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIAIDHN----IDSDERVLVGST 194 + G+I P D VDV++ S K +L N+RV A++ DS+ + T Sbjct: 115 SASGLILPGDRVDVLVYLRNSGSINKTLTRTILKNVRVFAVNEQTHRETDSEGNTITAKT 174 Query: 195 ATLELTPMQAKALV 208 +L + P Q + L+ Sbjct: 175 VSLLVKPSQVEVLM 188 >gi|218661134|ref|ZP_03517064.1| pilus assembly protein [Rhizobium etli IE4771] Length = 205 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 91/205 (44%), Positives = 130/205 (63%), Gaps = 4/205 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ V A +AG++AMR+ V T+ +NVL+S G+LAVG Sbjct: 1 MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIEKEPTVNVLVSSGNLAVGQR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W+A+P+ V G I + +P+A+++L G +VR+PI +G+PIR EK+ D + Sbjct: 61 LEEGSVHWMAWPQGGVVPGLITEAEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +E K VLSN+RV+AI Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180 Query: 180 DHNI---DSDERVLVGSTATLELTP 201 D I D + +VG+TATLELTP Sbjct: 181 DQQIQEKDDGSKAVVGTTATLELTP 205 >gi|148657460|ref|YP_001277665.1| SAF domain-containing protein [Roseiflexus sp. RS-1] gi|148569570|gb|ABQ91715.1| SAF domain [Roseiflexus sp. RS-1] Length = 260 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 90/258 (34%), Gaps = 26/258 (10%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEE-------VITENPAKFINVLISKGD 54 + + + + + + A+ AG + ++ V E I + ++ Sbjct: 3 RRSGWILLTLGVLLAIGAGALVYVVLQQQSVAAAEQARREVLAQQAPQVPTIKLPVAARS 62 Query: 55 LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 L G + P+ + FP + V + + +++ ++ + +GDP + V Sbjct: 63 LTPGNAIGPDDILLKDFPVDLVPVNALTE------TTQIESRVLARAVGQGDPFQRSMFV 116 Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----------RSLSER 163 +S +P G I +I+ D +D+ + Sbjct: 117 GERGESVSQEIPPGYVLFAFPIVDLLGQSNLIEDGDRIDLYLTLNTPLDASAAPAPDQAT 176 Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATL-ELTPMQAKALVAAQSV-AKLSLVLR 221 PT + L N++V+ + + +TA L + P A L + + LR Sbjct: 177 APTTALTLQNVQVLKVLRQAPREGETKTPATALLCAMRPEDAIILKHIKDTGGTIDFALR 236 Query: 222 SIADLNPSSSEDSDVWDV 239 S D P ++E ++ ++ Sbjct: 237 SPLDTEPFTTEPLNLPEL 254 >gi|152994346|ref|YP_001339181.1| SAF domain-containing protein [Marinomonas sp. MWYL1] gi|150835270|gb|ABR69246.1| SAF domain protein [Marinomonas sp. MWYL1] Length = 309 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 109/275 (39%), Gaps = 31/275 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF--INVLISKGDLAVG 58 MK++ + I + VFA+ ++ L S V K VL + DL G Sbjct: 1 MKVSSVFFISGALVFAIGGALLVRVLASTPPPPAPVVKAAPAPKPVFTPVLAASKDLVPG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + + ++W+A ++ + + + + G VR P+ KGD + +V G+ Sbjct: 61 DFIDNSAVQWLAVDKQYESHSYFLKG--VDQVDAVFGATVREPVAKGDVLGSRVVVLPGD 118 Query: 119 GG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------ 165 G ++S+L G RA + ++ G++ D VDVV+ + Sbjct: 119 AGFIASVLESGMRAVAIPADAVTSNAGLVSAGDRVDVVLGLKRDQENGGEADPMASIELP 178 Query: 166 --TVTVVLSNIRVIAIDHNIDSDERVLV------------GSTATLELTPMQAKALVAAQ 211 +L N+RV+A++ ++ + T TLE+ P + L A+ Sbjct: 179 KLASQTLLRNVRVLALNDAVEEMAKEKPTEEKSGAKKRKFYETVTLEVFPKDVERLTVAR 238 Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI 246 + L L LRS+ + S D + ++E + Sbjct: 239 EIGVLQLALRSVRNEMLVGSSDENRIAARDEVTTL 273 >gi|91783010|ref|YP_558216.1| putative signal peptide protein, CpaB like [Burkholderia xenovorans LB400] gi|91686964|gb|ABE30164.1| Putative signal peptide protein, CpaB like protein [Burkholderia xenovorans LB400] Length = 316 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 28/243 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + V ALV G+ A L +T V+++ LA G Sbjct: 1 MPNLTRIFAGVLIAVALVLGLFAWTLSRR---PAPVAVTPAVHASFPVVVATRALAPGKP 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + L + P +G + +L G + I P+ +L + G Sbjct: 58 ITVDDLRIQSLPIN--PNGAFTEPA------QLAGRVPNAEIGADSPVLESQL----SSG 105 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVL 171 L+ + G+RA + + +AVG ++P + VDV + +++ Sbjct: 106 LAERVEVGERALAVRVDEGNAVGNRLRPGNFVDVFFTLKRDGGSMGNGGEIDRTQARLLM 165 Query: 172 SNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 S +RV+A + S + TA L + L A+S +L LR+ D Sbjct: 166 SKVRVLAFGNATASGDSAGDPNGMVRTAVLAVPVADVDRLTLAESAGRLIFALRNPKDTE 225 Query: 228 PSS 230 Sbjct: 226 VVD 228 >gi|301165541|emb|CBW25112.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ] Length = 271 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 112/284 (39%), Gaps = 37/284 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + ++ + A+ A + + + I + K +V+I+K D+ + Sbjct: 1 MNTR---ALTLALIIAVFAMFMVYTYIDDEKTK----IIKKYGKEQSVVIAKVDIKELEL 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + + + + P V + + +E+ + VPILKG+ I ++ Sbjct: 54 IDDSKVTVTSMPSNFVHEKAFKTI------KEIQNTVATVPILKGEQITKPRVSWPDERS 107 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176 GLS + GKRA ++D+S ++VG +IKP D VD++ + + + +L ++ + Sbjct: 108 GLSRQVAVGKRAISLDVSERASVGKLIKPGDRVDILAGIDYAGGRKDLQKMKTILQDVLI 167 Query: 177 IAIDHNIDSDERVLVGS-----------------TATLELTPMQAKALV--AAQSVAK-L 216 ++ +I + ++ T TLEL P + + LV + + Sbjct: 168 LSTGKSISGNLPIIGVKTPRVIKKMKLNTYSDYGTVTLELDPYEVQKLVFILSYNSGTPP 227 Query: 217 SLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGE 260 L LR+ D + + ++D+ E I G Sbjct: 228 YLALRNNTDKEVVRIKSTKLFDILGEDASEAKIFFSEKYKSQGN 271 >gi|302343420|ref|YP_003807949.1| Flp pilus assembly protein CpaB [Desulfarculus baarsii DSM 2075] gi|301640033|gb|ADK85355.1| Flp pilus assembly protein CpaB [Desulfarculus baarsii DSM 2075] Length = 279 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 89/211 (42%), Gaps = 12/211 (5%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 + E + ++++ DL G+ ++ L +P E G A++ Sbjct: 31 AHKAQQEAERRVRTAPLVVAAVDLPAGLELSAGRLAVAQWPVEARPPGHF------GAVK 84 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 L G +++ P++KG+P+ KL GL++ + G RA T+ V G +K D Sbjct: 85 PLLGRVLQQPVVKGEPLLAGKLSPEGAAAGLAAAIKPGWRAVTISADEVVGVAGYLKVGD 144 Query: 151 HVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDERVLV---GSTATLELTPMQAK 205 VDV+ ++ + L ++ V+A+ H + D + G TL P A+ Sbjct: 145 RVDVIATVKGLDQGKEAVARLALQDLEVLAVSHQAEQDGKKPPKLKGQVLTLLARPADAE 204 Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 L A K+ L LR+ D P+ + + + Sbjct: 205 RLALAAGEGKILLALRNRQDRQPALTRGARL 235 >gi|156744073|ref|YP_001434202.1| SAF domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156235401|gb|ABU60184.1| SAF domain protein [Roseiflexus castenholzii DSM 13941] Length = 267 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 89/258 (34%), Gaps = 26/258 (10%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEE-------VITENPAKFINVLISKGD 54 + + + + + + A+ AG + ++ V E I + ++ Sbjct: 10 RRSGWILLTLGAILAIGAGALVYLVLQQQSVAAAEQARREVLAQQAPQVPVIKLPVAARP 69 Query: 55 LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 LA G + P+ + +P V + D +++ ++ + +GDP + V Sbjct: 70 LAPGNTIGPDDILLKDYPVNLVPVNALTD------TTQIENRILARTVGQGDPFQKSMFV 123 Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT------ 168 +S +P G I +I D +D+ + + Sbjct: 124 GERGESISQEIPPGYVLFAFPIVDLLGQSNLIADGDRIDLYLTLNTPLNAAATPAPDQPT 183 Query: 169 -----VVLSNIRVIAIDHNIDSDERVLVGSTATL-ELTPMQAKALVAAQSV-AKLSLVLR 221 + L N++V+ + + + +TA L + P A L + + LR Sbjct: 184 TPTTALTLQNVQVLKVLRSEPREGATKTPATALLCAMRPEDAIILKHIKDTGGTIDFALR 243 Query: 222 SIADLNPSSSEDSDVWDV 239 S D P ++E D+ ++ Sbjct: 244 SPLDTEPFTTEPLDLPEL 261 >gi|269926136|ref|YP_003322759.1| Flp pilus assembly protein CpaB [Thermobaculum terrenum ATCC BAA-798] gi|269789796|gb|ACZ41937.1| Flp pilus assembly protein CpaB [Thermobaculum terrenum ATCC BAA-798] Length = 258 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 29/256 (11%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M+ ++ ++V A AG+ + + + K + V+++ D+A G Sbjct: 1 MRKRIGILLMIVGLALAAFAGLTVINVTR------AAREAKPVIKQVQVVVAAQDIAQGS 54 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 +T ++LE FP + + +++ + I+KG I L D Sbjct: 55 PITASMLETKPFPADFAPSEAV------SSINDAVNRYSATNIVKGQIITRPLLSDTKQV 108 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR------------SLSERKPT 166 G L+ +PKGK A + S + G I+P D VDV++ + E + T Sbjct: 109 GKLALSIPKGKVAFALPASDLLSGNGQIQPGDRVDVLVTFFVKMTSIGPDGQTSDEERAT 168 Query: 167 VTVVLSNIRVIAI-DHNIDSDERVLVGSTATLELTPMQAKALVAAQSV--AKLSLVLRSI 223 L ++ V+ + SD L + P QA L A+ A + L LR Sbjct: 169 TQTTLQDLEVLDVLGTGAGSDGGNAKSPAVVLLVDPQQAVTLKLAKDSDKAVIDLALRGS 228 Query: 224 ADLNPSSSEDSDVWDV 239 +D + D + D Sbjct: 229 SDDHKQHETDGETEDS 244 >gi|281356955|ref|ZP_06243445.1| Flp pilus assembly protein CpaB [Victivallis vadensis ATCC BAA-548] gi|281316513|gb|EFB00537.1| Flp pilus assembly protein CpaB [Victivallis vadensis ATCC BAA-548] Length = 264 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 96/237 (40%), Gaps = 21/237 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ L ++ + VF L+A +++ ++ E+ ++ + ++ D A Sbjct: 1 MRQKFL--LLGAVVFGLLAFVLSY-----QQLEAEKRRIIGDSETVVLIKLAVDKAPNEE 53 Query: 61 VTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + P L V +P + + + + + G + + G ++ L Sbjct: 54 LQPGDL--VRYPVRRSREMQSMSREIPWSEVSRVIGRQLETTMTAGQVLQSTDLKPMTQR 111 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVLS 172 G + ++ G RA + + S+V +I+PND VDV+ + + +L Sbjct: 112 QGFNGVIRPGMRAVAIPVDPVSSVNNLIQPNDDVDVIGTFRFPDVRGDSSLDTVTLTILQ 171 Query: 173 NIRVIAIDHNIDSDE----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +++V+A+ + S T TL L P + + ++ A KL+L LR+ D Sbjct: 172 DVKVLAVGNRWGSASLDPAGARSYGTVTLLLYPEEVEMIIFASQKGKLNLSLRNFED 228 >gi|50119733|ref|YP_048900.1| hypothetical protein ECA0788 [Pectobacterium atrosepticum SCRI1043] gi|49610259|emb|CAG73702.1| putative exported protein [Pectobacterium atrosepticum SCRI1043] Length = 314 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 103/272 (37%), Gaps = 44/272 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ + + V A + ++ +S ++ + P + + VL++ L G Sbjct: 1 MKVNSTYVLSGALVLAGIVALMVRSHLSSEPPAPPPMVVKVP-EKVAVLVAAKALHPGDF 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + L W + + + ++ L G +R + +G P+ LV G Sbjct: 60 IDSASLRWDE--TDKPVSRTFNFIRGKDSQSLLLGATLRETVAEGTPLTSNVLVKPNEPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------- 166 ++++L KG RA ++ S ++ G++ D VDV++ ++ Sbjct: 118 FVAAVLRKGMRAISVPTSAIASNAGLVSAGDRVDVILSMKRDDQAELPPSRNQPVVMPLL 177 Query: 167 -VTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199 ++ ++RV+A++ + R T TLE+ Sbjct: 178 ASQTIVRDLRVLALNDKTGTPIYPRFDVAEDGTVLDATAKSRESAVRSRPTTYQTVTLEV 237 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 TP QA+AL A+ + L L LRS + + Sbjct: 238 TPQQAEALAVAKELGMLHLALRSATQDDIADP 269 >gi|255597441|ref|XP_002536774.1| conserved hypothetical protein [Ricinus communis] gi|223518588|gb|EEF25608.1| conserved hypothetical protein [Ricinus communis] Length = 302 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 113/271 (41%), Gaps = 22/271 (8%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ ++ I++ V A++ +I +V+ + + + +S DL G+++ Sbjct: 1 MSNIIKILLLLVGAVLIALIVRTVVASISHPAAQA-----VSTVKIRVSAADLPQGLLLR 55 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121 + L W P NV I V EL G L+R G + + ++ G L Sbjct: 56 DDDLAWKDVPAGNVPAAAI--VANAPNAIELKGALLRHAAAAGTVLGPDDVILPSAPGFL 113 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------KPTVTVVLSNIR 175 ++ L RA ++ I S G+I+P D+VD+++ + + R + V+ +R Sbjct: 114 AATLKPDMRAVSVAIDDVSGNAGLIQPGDYVDLLLTQQMDHRTDSPDLAVSSETVVERVR 173 Query: 176 VIAIDHN------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 V+A+ D+ + T TLE+TP A+ + A + LS LRS A + Sbjct: 174 VLAVGSELSRPKTSDAPDANNRARTVTLEVTPHMAEVVSVAARLGSLSFALRSFAKASRE 233 Query: 230 SSEDSDVWDVQEEGKEIQIIKAGVIVNKDGE 260 + S V + + AG I + E Sbjct: 234 ADAASAVPASGPLQA--RPVWAGDISSAVRE 262 >gi|187923644|ref|YP_001895286.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] gi|187714838|gb|ACD16062.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] Length = 316 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 27/242 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + V ALV G+ A L +T V+++ L G Sbjct: 1 MPNLTKILAGVLIAVALVLGLFAWSLSRR---PALVAVTPATQASFRVVVATHTLPAGKA 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + + + P +G D +L G + I P+ +L + G Sbjct: 58 ITVDDVRVQSLPIN--PNGAFTDPA------QLAGRVPNAEIGAESPVLESQL----SSG 105 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTVVLS 172 L+ + G+RA + + +AV ++P + VDV + +++S Sbjct: 106 LAERVEPGERALAVRVDEGNAVANRLRPGNFVDVFFTLKRDASIGNGGEIDRTQARLLMS 165 Query: 173 NIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 +RV+A + S + TA L + L A+S +L LR+ D Sbjct: 166 KVRVLAFGNATASGDSAGDPNGMVRTAVLAVPVADIDRLTLAESAGRLIFALRNPKDPEV 225 Query: 229 SS 230 Sbjct: 226 ID 227 >gi|239817411|ref|YP_002946321.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110] gi|239803988|gb|ACS21055.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110] Length = 331 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 87/270 (32%), Gaps = 35/270 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN-------PAKFINVLISKG 53 M + + + A+ G A L +T T A V+++ Sbjct: 1 MINLTKIVAAILVLLAIALGGYAWMLGRQAPAKTAVTATAPSEQPQSQQAPTYPVVVAAK 60 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 L G + + L G +V G + + + +G P+ +L Sbjct: 61 PLPAGQAIPADALRVERLTVN--PAGAFQEVA------TATGRVPVIDLSEGSPLMDNQL 112 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVV 170 V GL+ + +G+RA + VG I+P D VDV + + ++ Sbjct: 113 V----SGLALRVGEGERAVAIKADEIMGVGNKIQPGDFVDVFITLKSDGKDVDRSQARLL 168 Query: 171 LSNIRVIA-------------IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 LS RV+A D +R TA L ++ L + +L Sbjct: 169 LSRKRVLAFGSASVDGLPSKTTDKQQQQAQRTEAPRTAVLAVSVDDVNRLTIGDATGRLM 228 Query: 218 LVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 L LR+ D+ + + ++ Sbjct: 229 LALRNPNDVAEPDPKLFADLPTALQPASVR 258 >gi|317122047|ref|YP_004102050.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM 12885] gi|315592027|gb|ADU51323.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM 12885] Length = 236 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 103/246 (41%), Gaps = 18/246 (7%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + +++ + L ++ + + V+++ + + Sbjct: 3 RGRIVRYLLLPVLVGLAVTVLVAFYIR------VPAGQAESGPRVPVVVATRPVPAQTRL 56 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 ++L P + V G I +++ G + +VP+ +G+ + KL G Sbjct: 57 EADMLAVRQVPADLVGRGAIGR------LEDAVGKVTKVPLAEGEFVLASKLARGDGTDG 110 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSNIRVI 177 L+ LP+G RA T+ AVGG ++P D VDV + + +P V +++ N+ V+ Sbjct: 111 LAYRLPEGTRALTVAADPVIAVGGFVQPGDRVDVFIGLPGGQPGVAQPEVRLLVENVLVL 170 Query: 178 AIDHNIDSDERVLVG--STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+ ++ + + TL ++P A A+V A+ +L L LR D P+ + Sbjct: 171 AVQQQTAAEGQPAGEGLTHLTLAVSPAHAAAIVLAEQEGRLRLALRPAGDDTPAGPITAR 230 Query: 236 VWDVQE 241 + D+ Sbjct: 231 LADLAR 236 >gi|227326301|ref|ZP_03830325.1| hypothetical protein PcarcW_02899 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 314 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 103/277 (37%), Gaps = 44/277 (15%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ + + V A + ++ +S V+ + P VL++ DL G Sbjct: 1 MKVNSTYVLSGALVLAGIVALMVRSHLSSEPPAPPPVVVKAPEPT-KVLVAAKDLHPGDF 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + + L W + + V+ + L G +R P+ +G + +V+ G Sbjct: 60 LDSSSLRWQETEKSV--SRAFNFVYGQDKQSLLLGATLREPVKEGSWLSSNVVVNPNEPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------- 166 ++++L KG RA ++ S ++ G++ D VDV++ ++ Sbjct: 118 FVAAVLRKGMRAISVPTSAIASNAGLVSAGDRVDVILSMKRDDQSELPASRNQPVVMPLL 177 Query: 167 -VTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199 ++ ++RV+A++ + R T TLE+ Sbjct: 178 ASQTIVRDLRVLALNDKTGTPVYPRFDTAEDGTVLDATAKSRESAVRSRPATYQTVTLEV 237 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 TP QA+AL A+ + L L LRS + Sbjct: 238 TPQQAEALAVAKELGILHLALRSADLDDSVDPATGRP 274 >gi|53719510|ref|YP_108496.1| putative membrane fimbriae assembly protein [Burkholderia pseudomallei K96243] gi|126451660|ref|YP_001066057.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] gi|134282337|ref|ZP_01769042.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 305] gi|167902900|ref|ZP_02490105.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei NCTC 13177] gi|167911137|ref|ZP_02498228.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei 112] gi|167919160|ref|ZP_02506251.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei BCC215] gi|217423802|ref|ZP_03455303.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|226199689|ref|ZP_03795242.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|237812066|ref|YP_002896517.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] gi|242315361|ref|ZP_04814377.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] gi|254179958|ref|ZP_04886557.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|254188632|ref|ZP_04895143.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|254197581|ref|ZP_04904003.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] gi|254259533|ref|ZP_04950587.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] gi|52209924|emb|CAH35896.1| putative membrane fimbriae assembly protein [Burkholderia pseudomallei K96243] gi|126225302|gb|ABN88842.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] gi|134246375|gb|EBA46464.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 305] gi|157936311|gb|EDO91981.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|169654322|gb|EDS87015.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] gi|184210498|gb|EDU07541.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|217393660|gb|EEC33681.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|225928275|gb|EEH24309.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|237503330|gb|ACQ95648.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] gi|242138600|gb|EES25002.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] gi|254218222|gb|EET07606.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] Length = 299 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 94/269 (34%), Gaps = 27/269 (10%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + A++ GI A L + V+++ L G + + L Sbjct: 8 IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P G + + G + I P+ +L+ GL+ + Sbjct: 68 KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177 G+RA + + ++AVG ++P + VDV + + ++LS +RV+ Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175 Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 + + TA L + Q AL A++ +L L LRS D + ++ Sbjct: 176 SFGDATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIAAQT 235 Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261 + + G Q V+ G G Sbjct: 236 VA-IRAPAGAGPSNQAATGLVLSELSGSG 263 >gi|332798621|ref|YP_004460120.1| Flp pilus assembly protein CpaB [Tepidanaerobacter sp. Re1] gi|332696356|gb|AEE90813.1| Flp pilus assembly protein CpaB [Tepidanaerobacter sp. Re1] Length = 264 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 90/259 (34%), Gaps = 46/259 (17%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K RL+ ++ + V + +I L + K I V+ + ++A + Sbjct: 4 KKIRLIALIAALVTCISLYLIVSNLQKGGSIALNS-------KTITVVTATQNIAPYTKI 56 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN--G 119 T ++ + + + ++ G + + I G+ I ++ + Sbjct: 57 TAEMVSAQNITASDGIQNYFTQI------GDVVGKICKSDIYAGEVITSNRIAGEKDISL 110 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT----------- 168 GL++ L G RA T+ + + V IK ++VDV+ V + T Sbjct: 111 GLATQLENGMRAVTIAVDVEQGVAATIKAGNYVDVIYVNKVDGGSGDTTASSYLNSAAGA 170 Query: 169 -------------------VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209 L N++V+A+D+ D+ + TL +TP QA L Sbjct: 171 KNPVNSQTLYHNYGQYFAVTALQNVKVVALDNVFYKDDTKTSYQSVTLGVTPEQAAQLAL 230 Query: 210 A-QSVAKLSLVLRSIADLN 227 + L LR D Sbjct: 231 MCDGEGTIRLSLRPQEDKT 249 >gi|167620225|ref|ZP_02388856.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis Bt4] Length = 266 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 92/269 (34%), Gaps = 27/269 (10%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + A++ GI A L + V+++ L G + + L Sbjct: 8 IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADAL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P + G + I+ P+ +L+ GL+ + Sbjct: 68 KVQQTPAPIA--------GAFPNPTLVTGRIPANDIVAQAPVLESELM----SGLADQIA 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177 G+RA + + ++AVG ++P + VDV + + ++LS +RV+ Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVL 175 Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 + + TA L + Q AL A++ +L L LRS D + + + Sbjct: 176 SFGDATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDDDVA-TR 234 Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261 + G + V+ G G Sbjct: 235 TVAMRASGAGGPSNEAATGLVLGELSGSG 263 >gi|53723521|ref|YP_102955.1| hypothetical protein BMA1291 [Burkholderia mallei ATCC 23344] gi|67641295|ref|ZP_00440076.1| Flp pilus assembly protein CpaB [Burkholderia mallei GB8 horse 4] gi|121600825|ref|YP_993099.1| hypothetical protein BMASAVP1_A1779 [Burkholderia mallei SAVP1] gi|124385109|ref|YP_001026124.1| hypothetical protein BMA10229_A0116 [Burkholderia mallei NCTC 10229] gi|126449256|ref|YP_001080604.1| putative pilus assembly protein CpaB [Burkholderia mallei NCTC 10247] gi|167002483|ref|ZP_02268273.1| putative pilus assembly protein CpaB [Burkholderia mallei PRL-20] gi|254177688|ref|ZP_04884343.1| putative pilus assembly protein CpaB [Burkholderia mallei ATCC 10399] gi|254199897|ref|ZP_04906263.1| putative pilus assembly protein CpaB [Burkholderia mallei FMH] gi|254206229|ref|ZP_04912581.1| putative pilus assembly protein CpaB [Burkholderia mallei JHU] gi|254358354|ref|ZP_04974627.1| putative pilus assembly protein CpaB [Burkholderia mallei 2002721280] gi|52426944|gb|AAU47537.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344] gi|121229635|gb|ABM52153.1| conserved hypothetical protein [Burkholderia mallei SAVP1] gi|126242126|gb|ABO05219.1| putative pilus assembly protein CpaB [Burkholderia mallei NCTC 10247] gi|147749493|gb|EDK56567.1| putative pilus assembly protein CpaB [Burkholderia mallei FMH] gi|147753672|gb|EDK60737.1| putative pilus assembly protein CpaB [Burkholderia mallei JHU] gi|148027481|gb|EDK85502.1| putative pilus assembly protein CpaB [Burkholderia mallei 2002721280] gi|160698727|gb|EDP88697.1| putative pilus assembly protein CpaB [Burkholderia mallei ATCC 10399] gi|238522204|gb|EEP85650.1| Flp pilus assembly protein CpaB [Burkholderia mallei GB8 horse 4] gi|243061823|gb|EES44009.1| putative pilus assembly protein CpaB [Burkholderia mallei PRL-20] Length = 299 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 93/269 (34%), Gaps = 27/269 (10%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + A++ GI A L + V+++ L G + + L Sbjct: 8 IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P G + + G + I P+ +L+ GL+ + Sbjct: 68 KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177 G+RA + + ++AVG ++P + VDV + + ++LS +RV+ Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175 Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 + + TA L + Q AL A++ +L LRS D + ++ Sbjct: 176 SFGDATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVFALRSPRDEDIAAQT 235 Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261 + + G Q V+ G G Sbjct: 236 VA-IRAPAGAGPSNQAATGLVLSELSGSG 263 >gi|161524906|ref|YP_001579918.1| Flp pilus assembly protein CpaB [Burkholderia multivorans ATCC 17616] gi|189350344|ref|YP_001945972.1| pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|160342335|gb|ABX15421.1| Flp pilus assembly protein CpaB [Burkholderia multivorans ATCC 17616] gi|189334366|dbj|BAG43436.1| pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 313 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 96/263 (36%), Gaps = 31/263 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + A++ GI A ++ V A ++V+++ L VG + Sbjct: 3 NNLTKIIAGLLIAIAVLLGIYAW-MLGRSTPHPAPVQPTVAANPVSVVVATRTLPVGQPI 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L+ P +V G D L G + I P+ + LV GL Sbjct: 62 AADALKVQ--PIASVPAGAFADPAV------LVGRVPARDIPASAPVVSDALV----SGL 109 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLSN 173 + + G+RA + + ++AVG ++P + VDV + + +++S Sbjct: 110 AEDVQPGERAIAVRVDETNAVGNRLRPGNFVDVFLNLKREGNSMLDGEVSQTQARLLMSK 169 Query: 174 IRVIAIDHNI----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 +RV++ S+ + A L + Q AL +S +L+L LR+ Sbjct: 170 VRVLSFGDATPDRDSGNNTNGSNGQPSGVRIAVLAVPTAQVDALTLGESSGRLTLALRNP 229 Query: 224 ADLNPSSSEDSDVWDVQEEGKEI 246 D + + D + + Sbjct: 230 RDDELAMQTVAVRTDNKLSPSAL 252 >gi|167919050|ref|ZP_02506141.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei BCC215] Length = 275 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ + + + A+V + L +V + P + + V ++ DL G+++ Sbjct: 1 MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104 L W G + + +L G L+R P+ Sbjct: 57 DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116 Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176 Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209 +R + + +RV+A+ D+ + T T E++ A+ + Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236 Query: 210 AQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 237 GAHLGALSLALRSFA 251 >gi|167902789|ref|ZP_02489994.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei NCTC 13177] Length = 279 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ + + + A+V + L +V + P + + V ++ DL G+++ Sbjct: 1 MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104 L W G + + +L G L+R P+ Sbjct: 57 DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116 Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176 Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209 +R + + +RV+A+ D+ + T T E++ A+ + Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236 Query: 210 AQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 237 GAHLGALSLALRSFA 251 >gi|167581962|ref|ZP_02374836.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis TXDOH] Length = 269 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 105/268 (39%), Gaps = 33/268 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ + + + A+V + L ++ + P + + V ++ DL G+++ Sbjct: 1 MSHFLKLAGLMLVAVVGAFLFRAL----YIAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQ--------------PNAMQELDGVLVRVPILKGDPI 108 L W +V G + + A +L G L+R P+ +G P+ Sbjct: 57 DVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAAAAGDLKGDLLRHPVREGMPL 116 Query: 109 RLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-------- 159 ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 117 GPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAPGGAP 176 Query: 160 -LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVAAQSV 213 ER + + +RV+A+ D+ + T T E++ A+ + + Sbjct: 177 ADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSHDAQVITVGAHL 236 Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQE 241 LSL LRS A + ++ + Sbjct: 237 GALSLALRSFATSDRGAAGLASAEPPAP 264 >gi|126439530|ref|YP_001058806.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] gi|126219023|gb|ABN82529.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] Length = 299 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 94/269 (34%), Gaps = 27/269 (10%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + A++ GI A L + V+++ L G + + L Sbjct: 8 IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P G + + G + I P+ +L+ GL+ + Sbjct: 68 KVQQAPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177 G+RA + + ++AVG ++P + VDV + + ++LS +RV+ Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175 Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 + + TA L + Q AL A++ +L L LRS D + ++ Sbjct: 176 SFGDATVDRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIAAQT 235 Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261 + + G Q V+ G G Sbjct: 236 VA-IRAPAGAGPSNQAATGLVLSELSGSG 263 >gi|330819175|ref|YP_004348037.1| Flp pilus assembly protein CpaB [Burkholderia gladioli BSR3] gi|327371170|gb|AEA62525.1| Flp pilus assembly protein CpaB [Burkholderia gladioli BSR3] Length = 354 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 100/280 (35%), Gaps = 34/280 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ-TEEVITENPAKFINVLISKGDLAVGMVV 61 + I ++ A + R + + E ++V++ + D+ G + Sbjct: 13 ANTWLLIGIAVAAAGGITWVTYRYMLVSEARIKAEAAERREGPGVSVVVPRADVPAGTPL 72 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + V+D + + ++ P+ +G P+RL+ + Sbjct: 73 DSAVFVAREISADLVYDDMLQ----VDDFTHHRNAVLVKPVRRGRPLRLQDVDATRARDF 128 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---------RSLSERKPTVTVVLS 172 S L G RA T+ I ++ M++P + VD+ V + ++ +++ Sbjct: 129 SDTLAAGMRALTLPIDAINSTDSMLRPGNRVDLYWVGTLSFVTRGGDPAGDTKSIRLLMP 188 Query: 173 NIRVIAIDHNIDSDERVLVGS------------TATLELTPMQAKALVAAQSVAKLSLVL 220 +RV+A H++ + T TL++ +A + AQ + L LVL Sbjct: 189 GVRVLATGHDVRPRDAGEAARDMADGARRDGYGTVTLQVPVAEAARIALAQKLGGLRLVL 248 Query: 221 RSIADLNPSSSEDSD--------VWDVQEEGKEIQIIKAG 252 R+ D D ++ + ++II G Sbjct: 249 RNSKDPGDPVQRGLDETELFAARADAPADDRERVEIITGG 288 >gi|126452162|ref|YP_001066149.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] gi|126225804|gb|ABN89344.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] Length = 350 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ + + + A+V + L +V + P + + V ++ DL G+++ Sbjct: 1 MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104 L W G + + +L G L+R P+ Sbjct: 57 DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116 Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176 Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209 +R + + +RV+A+ D+ + T T E++ A+ + Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236 Query: 210 AQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 237 GAHLGALSLALRSFA 251 >gi|218513094|ref|ZP_03509934.1| pilus assembly protein [Rhizobium etli 8C-3] Length = 202 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 88/202 (43%), Positives = 128/202 (63%), Gaps = 4/202 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ V A +AG++AMR+ V T+ +NVL+S G+LAVG Sbjct: 1 MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIEKEPTVNVLVSSGNLAVGQR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W+A+P+ V G I ++ +P+A+++L G +VR+PI +G+PIR EK+ D + Sbjct: 61 LEEGSVHWMAWPQGGVVPGLITEIEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +E K VLSN+RV+AI Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180 Query: 180 DHNI---DSDERVLVGSTATLE 198 D I D + +VG+TATLE Sbjct: 181 DQQIQEKDDGSKAVVGTTATLE 202 >gi|254197384|ref|ZP_04903806.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] gi|169654125|gb|EDS86818.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] Length = 350 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 92/245 (37%), Gaps = 33/245 (13%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 ++ ++ L +V + P + + V ++ DL G+++ L W Sbjct: 7 LASLMLVAVVGAFLFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLLLRDADLGWKTMA 66 Query: 73 EENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILKGDPIRLEKLV 114 G + + +L G L+R P+ G P+ ++ Sbjct: 67 RSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRAGAPLGPADVI 126 Query: 115 DRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---------LSERK 164 G L++ L G RA ++ I S G+I+P D+VDV++ + +R Sbjct: 127 SPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAPGGTPADPQRA 186 Query: 165 PTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + + +RV+A+ D+ + T T E++ A+ + + LSL Sbjct: 187 VESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITVGAHLGALSLA 246 Query: 220 LRSIA 224 LRS A Sbjct: 247 LRSFA 251 >gi|254297794|ref|ZP_04965247.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 406e] gi|157806884|gb|EDO84054.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 406e] Length = 299 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 93/269 (34%), Gaps = 27/269 (10%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + A++ GI A L V+++ L G + + L Sbjct: 8 IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMAPVVVAARALPAGQPIPADAL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P G + + G + I P+ +L+ GL+ + Sbjct: 68 KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177 G+RA + + ++AVG ++P + VDV + + ++LS +RV+ Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175 Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 + + TA L + Q AL A++ +L L LRS D + ++ Sbjct: 176 SFGDATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIAAQT 235 Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261 + + G Q V+ G G Sbjct: 236 VA-IRAPAGAGPSNQAATGLVLSELSGSG 263 >gi|76810999|ref|YP_333434.1| CpaB family Flp pilus assembly protein [Burkholderia pseudomallei 1710b] gi|126438737|ref|YP_001058907.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] gi|134282270|ref|ZP_01768975.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 305] gi|226196386|ref|ZP_03791968.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|254179873|ref|ZP_04886472.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|254188721|ref|ZP_04895232.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|254258897|ref|ZP_04949951.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] gi|76580452|gb|ABA49927.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei 1710b] gi|126218230|gb|ABN81736.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] gi|134246308|gb|EBA46397.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 305] gi|157936400|gb|EDO92070.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|184210413|gb|EDU07456.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|225931603|gb|EEH27608.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|254217586|gb|EET06970.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] Length = 350 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ + + + A+V + L +V + P + + V ++ DL G+++ Sbjct: 1 MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104 L W G + + +L G L+R P+ Sbjct: 57 DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116 Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176 Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209 +R + + +RV+A+ D+ + T T E++ A+ + Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236 Query: 210 AQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 237 GAHLGALSLALRSFA 251 >gi|121599044|ref|YP_993007.1| Flp pilus assembly protein CpaB [Burkholderia mallei SAVP1] gi|124386572|ref|YP_001026339.1| Flp pilus assembly CpaB [Burkholderia mallei NCTC 10229] gi|126449623|ref|YP_001080387.1| Flp pilus assembly protein CpaB [Burkholderia mallei NCTC 10247] gi|254177864|ref|ZP_04884519.1| Flp pilus assembly protein CpaB family [Burkholderia mallei ATCC 10399] gi|254358541|ref|ZP_04974814.1| Flp pilus assembly protein CpaB family [Burkholderia mallei 2002721280] gi|121227854|gb|ABM50372.1| Flp pilus assembly protein CpaB [Burkholderia mallei SAVP1] gi|124294592|gb|ABN03861.1| Flp pilus assembly CpaB [Burkholderia mallei NCTC 10229] gi|126242493|gb|ABO05586.1| Flp pilus assembly protein CpaB [Burkholderia mallei NCTC 10247] gi|148027668|gb|EDK85689.1| Flp pilus assembly protein CpaB family [Burkholderia mallei 2002721280] gi|160698903|gb|EDP88873.1| Flp pilus assembly protein CpaB family [Burkholderia mallei ATCC 10399] Length = 350 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ + + + A+V + L +V + P + + V ++ DL G+++ Sbjct: 1 MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104 L W G + + +L G L+R P+ Sbjct: 57 DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116 Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176 Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209 +R + + +RV+A+ D+ + T T E++ A+ + Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236 Query: 210 AQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 237 GAHLGALSLALRSFA 251 >gi|89897409|ref|YP_520896.1| hypothetical protein DSY4663 [Desulfitobacterium hafniense Y51] gi|89336857|dbj|BAE86452.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 286 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 19/226 (8%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G+I + L + ++ ++ +V+ ++ G +T ++ + V E N+ Sbjct: 21 VLGVICIVLSLVICFALTPLFNQSVSQKASVVRVVKEIKAGDAITKDMFQTVEVGEYNLP 80 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 + I + G ++ GD I KL D + L L K+A ++ Sbjct: 81 EDVIKQQDS------VLGKYAVADLVPGDYILSAKLSDTPASENAYLYNLSGDKQAISVS 134 Query: 136 I-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184 I + + + G + D V V+ + + L+ + VI + Sbjct: 135 IKNFAGGLSGKLISGDIVSVIAPDYKKQGSTVIPTELTYVEVIGVTASTGYDTDTGEQTK 194 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 ++ + +T TL ++P QAK L +S KL L L ++ Sbjct: 195 DEDEKQLPATVTLLVSPEQAKILAELESDGKLHLSLVYRGSKENAA 240 >gi|114321312|ref|YP_742995.1| Flp pilus assembly protein CpaB-like protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227706|gb|ABI57505.1| Flp pilus assembly protein CpaB-like protein [Alkalilimnicola ehrlichii MLHE-1] Length = 316 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 85/251 (33%), Gaps = 33/251 (13%) Query: 1 MKLTRLMGIVVS-GVFALVAGIIAMRLVSPHHVQ---------TEEVITENPAKFINVLI 50 M L+ + + ALV G + LV+ + E V+ Sbjct: 1 MNSRVLIVLAIVFIGAALVVGWWGISLVTDDESEIRIDEVTDVPEPDEPRPDEDGHPVVF 60 Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + +L G +V + V D +E+ G+ V PI +G+ + Sbjct: 61 AVTELEPGQLVGEADIHTETL--RRVPPLAFSDP------EEVIGLRVEAPIQEGELLTA 112 Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV 170 + +S L G+RA + + VGG + P D VDV++ S ++ Sbjct: 113 PRFSVASQ--VSRGLLPGERAVAISVDDVIGVGGYLSPGDRVDVMLYLSQRGVGEIGRLL 170 Query: 171 LSNIRVIAIDH-------------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 NIRV+A + + +R TA L L L+ A S L Sbjct: 171 HPNIRVLAYGEDLAIPPDGVVDRRDEEGTQRQRGARTAVLALPEEDVATLLLADSAGTLR 230 Query: 218 LVLRSIADLNP 228 L R + P Sbjct: 231 LAARPAIERRP 241 >gi|114797097|ref|YP_759868.1| putative Flp pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444] gi|114737271|gb|ABI75396.1| putative Flp pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444] Length = 295 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 92/239 (38%), Gaps = 18/239 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK L+ + +S A +S + + + +++ + G + Sbjct: 1 MKAIPLISLGLSLALGAGAIFFGREFMSGDGGEANAAVAAPAIAMTQIAVARATIEPGKL 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNG 119 + +++E +PE V G + V G++V G+P+ EK+ Sbjct: 61 IDASMVEMRDWPESAVPAGAMRAVTDLGETAYSRGLVV-----AGEPLLAEKIDTTGSVL 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----------PTVT 168 L++ + G RA ++ ++ + V G + P D VDV + + Sbjct: 116 TLAANIQPGMRAVSVVVANDTGVAGFVLPGDRVDVNEFVEAKDARGAPEDSRRSADVFAQ 175 Query: 169 VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 VL ++V+A+D + E +T TLE+TP A L AA A L L L + Sbjct: 176 PVLKGVKVLAVDQTFEEGLEGAYPSNTVTLEVTPQDALLLGAASRRAALGLALIGREEE 234 >gi|83721444|ref|YP_442981.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis E264] gi|257139205|ref|ZP_05587467.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis E264] gi|83655269|gb|ABC39332.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis E264] Length = 345 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 54/278 (19%), Positives = 107/278 (38%), Gaps = 33/278 (11%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ + + + A+V + L +V + P + + V ++ DL G+++ Sbjct: 1 MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQ--------------PNAMQELDGVLVRVPILKGDPI 108 L W +V G + + A +L G L+R P+ +G P+ Sbjct: 57 DVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAAAAGDLKGDLLRHPVREGMPL 116 Query: 109 RLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-------- 159 ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 117 GPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAPGGAP 176 Query: 160 -LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVAAQSV 213 ER + + +RV+A+ D+ + T T E++ A+ + + Sbjct: 177 ADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSHDAQVITVGAHL 236 Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 LSL LRS A + + + + +A Sbjct: 237 GALSLALRSFATSDRGAVGLASAEPPAPPVWAGDVSRA 274 >gi|217421311|ref|ZP_03452815.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|237812164|ref|YP_002896615.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] gi|217395053|gb|EEC35071.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|237502713|gb|ACQ95031.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] Length = 350 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ + + + A+V + L +V + P + + V ++ DL G+++ Sbjct: 1 MSHFLKLAGLMLVAVVGAFLFRAL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104 L W G + + +L G L+R P+ Sbjct: 57 DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116 Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176 Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209 +R + + +RV+A+ D+ + T T E++ A+ + Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236 Query: 210 AQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 237 GAHLGALSLALRSFA 251 >gi|53719432|ref|YP_108418.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei K96243] gi|52209846|emb|CAH35818.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei K96243] Length = 350 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 37/255 (14%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ + + + A+V + L +V + P + + V ++ DL G+++ Sbjct: 1 MSHFLKLAGLMLVAVVGAFLFRVL----YVAASQPRPAAPPQQVRVRVAAADLPAGLLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQ------------------PNAMQELDGVLVRVPILK 104 L W G + + +L G L+R P+ Sbjct: 57 DADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPVRA 116 Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---- 159 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 117 GAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAP 176 Query: 160 -----LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVA 209 +R + + +RV+A+ D+ + T T E++ A+ + Sbjct: 177 GGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVITV 236 Query: 210 AQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 237 GAHLGALSLALRSFA 251 >gi|149188847|ref|ZP_01867137.1| hypothetical protein VSAK1_05840 [Vibrio shilonii AK1] gi|148837267|gb|EDL54214.1| hypothetical protein VSAK1_05840 [Vibrio shilonii AK1] Length = 281 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 50/272 (18%), Positives = 101/272 (37%), Gaps = 29/272 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIA-----MRLVSPHHVQTEEVITENPAKFINVLISKGDL 55 MK + + + V G+ + ++ Q E A+++ V S + Sbjct: 1 MKSKIIFAVAFLAILIGVLGVYSSMNKPLQQPVVEEKQAATPTIEPKAEYVTVWRSTESI 60 Query: 56 AVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 + G + + ++ + D I + + L PI G I E L Sbjct: 61 SRGEPINSSKVKREQLLLTSALDEGIRSDVELDFDPT---TLFNTPISSGQLILPEMLTK 117 Query: 116 RG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------ 162 + G + L+ +G + +S + + I+P +H+D++ V S + Sbjct: 118 KDAPGYIDLLVTEGMTLYPLVVSSKNLISDFIRPGEHIDILTVSSPKDNLSGKREKPIKF 177 Query: 163 RKPTVTVVLSNIRVIAIDHNIDS-------DERVLVGSTATLELTPMQAKALVAAQSVAK 215 R T T+ L NI+V+ + + + + + +T +E+ P + L AQ Sbjct: 178 RGVTATLFLQNIKVLNMGGSEEEQSVKPVSENKEDGFTTIIIEIPPEEVARLALAQRTMH 237 Query: 216 LSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 L V RS P ++ +V D +E++ Sbjct: 238 LE-VYRSREYQEPVYADVRNVMDNYIGVEELR 268 >gi|227114875|ref|ZP_03828531.1| hypothetical protein PcarbP_18020 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 314 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 99/277 (35%), Gaps = 44/277 (15%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ + + V A + ++ +S + + VL++ DL G Sbjct: 1 MKVNSTYVLSGALVLAGIVALMVRSHLSS-EPPAPPPVVVKAPEKAAVLVAAKDLHPGDF 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + P+ L W + + V + L G +R + +G + +V G Sbjct: 60 IDPSSLRWQT--TDEPVSRSFNFVRGQDNQSLLLGATLRETVTQGSWLSSNVVVKPNEPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------- 166 ++++L KG RA ++ S ++ G++ D VDV++ ++ Sbjct: 118 FVAAVLHKGMRAISVPTSAIASNAGLVSAGDRVDVILSMRRDDQSELPASRNQPVVMPLL 177 Query: 167 -VTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199 ++ ++RV+A++ + R T TLE+ Sbjct: 178 ASQTIVRDLRVLALNDKTGTPIYPRFDAAEDGTVLDATAKSRESAVRSRPATYQTVTLEV 237 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 TP QA+AL A+ + L L LRS + Sbjct: 238 TPQQAEALAVAKELGILHLALRSADLDDVVDPTTGRP 274 >gi|170701751|ref|ZP_02892687.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10] gi|170133334|gb|EDT01726.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10] Length = 301 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 90/264 (34%), Gaps = 26/264 (9%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + A++ GI A L A+ + ++++ L G + Sbjct: 3 NNLTKIIAGLLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPIVVAARLLPAGQPI 62 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L+ + G +D L G + IL P+ L GL Sbjct: 63 PADALKLAQV--SMMPTGGFNDP------TALVGRVPANDILAAAPVLEGGLT----SGL 110 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----------PTVTVVL 171 + + G+RA + + S+AVG ++P + VDV + ++L Sbjct: 111 ADQVALGERAVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQATSEIPATQARLLL 170 Query: 172 SNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 S +RV++ + TA L + Q AL A++ +L+L LR+ D Sbjct: 171 SKVRVLSFGDATSDRDGGGGPSGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTE 230 Query: 228 PSSSEDSDVWDVQEEGKEIQIIKA 251 ++ + E Q Sbjct: 231 IATQTVAVRTGGGEATPSAQAASG 254 >gi|154250525|ref|YP_001411349.1| SAF domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154154475|gb|ABS61692.1| SAF domain protein [Parvibaculum lavamentivorans DS-1] Length = 317 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 22/240 (9%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 + ++ + VL++ D+ G ++ L E G D Sbjct: 56 SARAPAGVDDGRGLAAENAVTVLVAARDVVRGQRISEADLGLRRM-EGPAPSGSFAD--- 111 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 Q G + I I + L + G+++L+P+G+RA + I+ VGG Sbjct: 112 ---AQSAIGRVATDDIRSSQIIFQQALSSEPAAAGIAALVPEGQRAFAIRIAEEDIVGGF 168 Query: 146 IKPNDHVDVVMVRSL------------SERKPTVTVVLSNIRVIAIDHNI--DSDERVLV 191 ++ D VDV + ++L +++V+A+ + + + Sbjct: 169 LQAGDRVDVFATFPGAVYGQQGGLGQREGDQSKSALLLQDMQVLAVGPALSHQAGQVNAG 228 Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 T T+ P L A + ++L +R+ D + E + D++ G + ++A Sbjct: 229 ARTVTVAAPPNALARLALAGRLGHITLAIRNPGDREVAPGELVALDDLRPAGAAVAPVEA 288 >gi|319795778|ref|YP_004157418.1| flp pilus assembly protein cpab [Variovorax paradoxus EPS] gi|315598241|gb|ADU39307.1| Flp pilus assembly protein CpaB [Variovorax paradoxus EPS] Length = 327 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 84/253 (33%), Gaps = 33/253 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE-------NPAKFINVLISKG 53 M + + + A+ G A L T A V+++ Sbjct: 1 MINLTKIIAAILVLLAIALGGYAWMLSRQAPAPRPIATTPNTASAKTQQAVTYPVVVAAK 60 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 L G ++ + L G D G + + + +G P+ +L Sbjct: 61 ALPAGQIIPADALRVERLTIN--PSGAFQDTAV------ATGRVPVLDLGEGTPLLEGQL 112 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVV 170 V GL+ + +G+RA + VG ++P D VDV ++ + ++ Sbjct: 113 V----SGLALKIAEGERAVAVKADEVMGVGNKVQPGDFVDVFILLKSDGKDVDRSQARLL 168 Query: 171 LSNIRVIAIDHNIDSD-----------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 LS RV+A + +R TA L + L A+S +L L Sbjct: 169 LSRKRVLAFGNASVDGLTSKTADKQQPQRAEPARTAVLAVPVDDINRLTLAESSGRLLLA 228 Query: 220 LRSIADLNPSSSE 232 LR+ D+ + Sbjct: 229 LRNPTDMQEPDPK 241 >gi|307730007|ref|YP_003907231.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] gi|307584542|gb|ADN57940.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] Length = 317 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 93/275 (33%), Gaps = 29/275 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + + AL+ G+IA+ L+ +T V+++ L G Sbjct: 1 MLKFTRIAAGLLIAVALLLGVIAVTLLRR---PAPAPVTSVRQSLFPVVVAARLLPAGKP 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + L P +G + + G + I P+ E+L + G Sbjct: 58 IAADALRVQPLPIH--PNGAFAEPSL------VAGRVPAADIGAEAPVLEEQL----SSG 105 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTVVLS 172 L+ + G+RA + + S+AVG ++P + VDV + +++S Sbjct: 106 LAERIEPGERAVAVRVEESNAVGNRLRPGNFVDVFFTLKRDGNMGSGGEIGQTQARLLMS 165 Query: 173 NIRVIAIDHNI----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 +RV+A + S ++ + TA L + L A+S +L LR+ D Sbjct: 166 KLRVLAFGNATATGDTSGDQNGMVRTAVLAVPVADVDRLTLAESSGRLVFALRNPKDPEV 225 Query: 229 SSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEGIS 263 + + G + Sbjct: 226 IDASAFAPLPAVLSTSTQT--RGGAPHGDSTRAAA 258 >gi|172060494|ref|YP_001808146.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] gi|171993011|gb|ACB63930.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] Length = 311 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 95/267 (35%), Gaps = 32/267 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + A++ GI A ++ Q V A + V+++ L VG + Sbjct: 3 NNLTKIIAGLLIAIAVLLGIYAW-MLGRSASQPAPVQQVIAASPVPVVVATRALPVGQPI 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L+ P V G D L G + I P+ + LV GL Sbjct: 62 AADALKVQ--PIAPVPTGAFADPAI------LVGRVPARDIPASAPVVSDSLV----SGL 109 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---------TVTVVLS 172 + + G+RA + + ++AVG ++P + VDV + P +++S Sbjct: 110 AEDVQPGERAIAIRVDETNAVGNRLRPGNFVDVFVNLKREASGPMLDGEVSQTQARLLMS 169 Query: 173 NIRVIAIDHNIDSDER----------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 +RV++ + A L + Q AL +S +L+L LR+ Sbjct: 170 KVRVLSFGDATPERDSGSNTNGNNGQPSSARIAVLAVPTAQVDALTLGESSGRLTLALRN 229 Query: 223 IADLNPSSSEDSDVWDVQEEGKEIQII 249 D ++ + D + + + Sbjct: 230 PRDDELATQTVAVRTDNKLSPSALAAV 256 >gi|160893683|ref|ZP_02074467.1| hypothetical protein CLOL250_01237 [Clostridium sp. L2-50] gi|156864668|gb|EDO58099.1| hypothetical protein CLOL250_01237 [Clostridium sp. L2-50] Length = 286 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 84/225 (37%), Gaps = 19/225 (8%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G++ + L + + ++ ++ ++VG +T ++++ + N+ Sbjct: 9 VLGVLCIVLSLIICFAVTPLFNKAMSEKTEIVRVVKPISVGEEITSDMVKTIEVGSYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 D + + G + GD I K+ + + L L K+A ++ Sbjct: 69 DDVVKHSD------TVVGAFASADLAPGDYILTSKIAEEPAAENAYLYHLTGEKQAISVT 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184 + ++ + G +K D V V+ + K + L + VIA+ ++ Sbjct: 123 VKAFANGLSGKLKSGDIVSVIAPDYRKQGKTVIPAELQYVEVIAVTANSGYDANTGEELE 182 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 + T TL +TP Q+ L ++ KL L L D + Sbjct: 183 DGADRELPGTVTLLVTPEQSMVLAELEADGKLHLSLVYRGDEKSA 227 >gi|319941903|ref|ZP_08016224.1| hypothetical protein HMPREF9464_01443 [Sutterella wadsworthensis 3_1_45B] gi|319804556|gb|EFW01426.1| hypothetical protein HMPREF9464_01443 [Sutterella wadsworthensis 3_1_45B] Length = 295 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 35/232 (15%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 + + ++V + +L+ G ++ +EW A + D F+ + Sbjct: 29 QKEAAAPVVSENKAQVSVARAAANLSPGSFLSARDIEWTAVAQSAAKDTFVQNES----- 83 Query: 91 QELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 Q+L G LV PI G+ I L ++++L G RA T+++ + + G+++P Sbjct: 84 QDLSGALVLKPIKAGEVISPSALLARTDPEFVAAVLAPGMRAFTIEVDMVTGGAGLLRPG 143 Query: 150 DHVDVVMVRSLSERKP----------TVTVVLSNIRVIAIDHNIDSDE------------ 187 + VDV++ +K +L N+RVIA+DH I+ Sbjct: 144 NRVDVILAAQTDPQKSRAFASQKNFDVARTLLHNLRVIAVDHTIEPKGFGADPQSSDPRM 203 Query: 188 -------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 + T TLE+TP + L A+S +LSL LR+ + Sbjct: 204 VRSSTPANINRKGTVTLEVTPKDVELLTVARSNGQLSLSLRNSQSGEAVQTG 255 >gi|257139290|ref|ZP_05587552.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis E264] Length = 303 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 92/269 (34%), Gaps = 27/269 (10%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + A++ GI A L + V+++ L G + + L Sbjct: 8 IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADAL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P + G + I+ P+ +L+ GL+ + Sbjct: 68 KVQQTPAPIA--------GAFPNPTLVTGRIPANDIVAQAPVLESELM----SGLADQIA 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177 G+RA + + ++AVG ++P + VDV + + ++LS +RV+ Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVL 175 Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 + + TA L + Q AL A++ +L L LRS D + + + Sbjct: 176 SFGDATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDDDVA-TR 234 Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261 + G + V+ G G Sbjct: 235 TVAMRASGAGGPSNEAATGLVLGELSGSG 263 >gi|170696787|ref|ZP_02887896.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M] gi|170138303|gb|EDT06522.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M] Length = 318 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 24/242 (9%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 +V+G VA ++ + V + V+++ L G + + L Sbjct: 12 IVAGALIAVALLLGVFAVMLLRRPAPAPVASVKQTVFPVVVATRVLPAGKPIGADALRVQ 71 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 P +G D + G + I P+ E+L + GL+ + G+ Sbjct: 72 PLPIN--PNGAFADPSL------VAGRVPAADIGADSPVLEEQL----SSGLAERIEPGE 119 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLSNIRVIAIDH 181 RA + + S+AVG ++P + VDV + +++S +RV+A + Sbjct: 120 RAVAVRVEESNAVGNRLRPGNFVDVFFTLKRDGNMGSGGEIERTQARLLMSKVRVLAFGN 179 Query: 182 NI----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 S + + TA L + L A+S +L LR+ D + Sbjct: 180 ATAAGDTSGDPNGMVRTAVLAVPVADVDRLTLAESSGRLVFALRNPKDAEIIDAAAFAPL 239 Query: 238 DV 239 Sbjct: 240 PA 241 >gi|291557188|emb|CBL34305.1| Flp pilus assembly protein CpaB [Eubacterium siraeum V10Sc8a] Length = 318 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 83/227 (36%), Gaps = 20/227 (8%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G++ + L + + + + ++ K D+ +G +T +E V N+ Sbjct: 9 VLGVVCIALALIICFAITPLFNASKSSTMKIIRIKNDVKIGQEITSKDIEVVEVGAYNMP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRGNGGLSSLLPKGKRAATMD 135 + +++ G ++KG+ + K+ G L KRA ++ Sbjct: 69 SEVLQKS------EDVVGKYAAAEMIKGEYVLSAKVSDTPASENGYLYGLTGEKRAISIT 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV--- 191 I + + G + D V ++ V + + V L + VIA+ +D+ + Sbjct: 123 IPSFAGGLSGKLISGDIVSIIAVDYKEKGETLVPDELQYVEVIAVTDKKGNDDETVTVKP 182 Query: 192 --------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 T TL +TP QA L ++ ++ + L + Sbjct: 183 DGEEETELPETVTLLVTPEQANILAELEAEGEIHVALVYRGTAENAQ 229 >gi|326204891|ref|ZP_08194744.1| Flp pilus assembly protein CpaB [Clostridium papyrosolvens DSM 2782] gi|325984940|gb|EGD45783.1| Flp pilus assembly protein CpaB [Clostridium papyrosolvens DSM 2782] Length = 283 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 22/229 (9%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G+ + L + + ++ +++ D+ G + N+++ V N+ Sbjct: 9 VLGVSCILLSLVICFAVTPLFNSSLSQRTSIVRVSRDIKAGDKINGNMVQTVEVGSYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 G I + ++ V + +GD I + KL S L L K+A ++ Sbjct: 69 SGVIK------SKDDVIDKYVLADMKEGDYILITKLSAAPVAENSYLHSLNGEKQAISVT 122 Query: 136 I-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV--- 191 + S +S + G + P D V V+ ++ V L +RVI + + D Sbjct: 123 VRSFASGLSGKLMPGDIVSVIAPDYKNQGISIVPEELRYVRVIGVTASTGYDTNTSENME 182 Query: 192 ----------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 ST TL ++ Q++ L +S KL L L + Sbjct: 183 KKSDNKEKELPSTVTLLVSQTQSEILAGLESDGKLHLSLVYRGSKENAD 231 >gi|33596968|ref|NP_884611.1| hypothetical protein BPP2375 [Bordetella parapertussis 12822] gi|33566419|emb|CAE37672.1| putative membrane protein [Bordetella parapertussis] Length = 313 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 88/259 (33%), Gaps = 34/259 (13%) Query: 19 AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 A + +P + V+++ +A G + +L+ +P + Sbjct: 22 AAFMLATRPAPPPPKPVAQRASAALPTYPVVVAGKPIAAGDRLAAELLKIERWPVQPANG 81 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138 + L G +VR I G+P+ L GL+ L G+RA T+ + Sbjct: 82 YA--------ESEALLGQMVRQDIPAGEPVTAPMLA----RGLARHLAPGERAVTIAVDE 129 Query: 139 SSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRVIAIDHN-------------- 182 S I P D VDV +V ++ S I+V+A Sbjct: 130 LSGAQNRILPGDLVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPSV 189 Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 + A L + + L+ A +L LVLRS D++ + E Sbjct: 190 AQRGQPPAAPRNAMLAVPVERVNELLLAAKAGRLQLVLRSPEDVDVPD------LALFPE 243 Query: 243 GKEIQIIKAGVIVNKDGEG 261 + ++AG+ + +G Sbjct: 244 RAPVLALRAGLTAEQQRDG 262 >gi|330830433|ref|YP_004393385.1| Flp pilus assembly protein CpaB [Aeromonas veronii B565] gi|328805569|gb|AEB50768.1| Flp pilus assembly protein CpaB [Aeromonas veronii B565] Length = 296 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 94/244 (38%), Gaps = 22/244 (9%) Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87 S + + P + VL++ + G + P L W A PE + + Sbjct: 30 SGASPRDPPAESLAPDRVAQVLVAAHRVQAGSFIHPEDLRWQALPEAEERNLPGLFLFGF 89 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMI 146 + L G LV + G + + LV LS+++ G RA T+ + +A G+I Sbjct: 90 TDTKALKGSLVTRTLEAGQIVSADDLVRPEQSHYLSAMMAPGMRAVTLALGREAASHGLI 149 Query: 147 KPNDHVDVVMVRSLS----------ERKPTVTVVLSNIRVIAIDHNIDS---------DE 187 +P + VDV++ + + ++L++I+++AID + + Sbjct: 150 RPGNRVDVILTSKHARQHNAQGAEVTSNQSAEIILTDIKLLAIDAQVTDIAALNGNPAAQ 209 Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 T EL P A L+ A + +L+LVLRS + + + Q Sbjct: 210 DNFDQVAVTFELPPRAAARLLLAHRLGELALVLRSA--QSAPAGSPAMALPEGSLIWAEQ 267 Query: 248 IIKA 251 + + Sbjct: 268 VARG 271 >gi|33593024|ref|NP_880668.1| hypothetical protein BP1995 [Bordetella pertussis Tohama I] gi|33563399|emb|CAE42275.1| putative membrane protein [Bordetella pertussis Tohama I] gi|332382436|gb|AEE67283.1| hypothetical protein BPTD_1965 [Bordetella pertussis CS] Length = 313 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 89/259 (34%), Gaps = 34/259 (13%) Query: 19 AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 A + +P + V+++ +A G + ++L+ +P + Sbjct: 22 AAFMLATRPAPPPPKPVAQRASAALPTYPVVVAGKPIAAGDRLAADLLKIERWPVQPANG 81 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138 + L G +VR I G+P+ L GL+ L G+RA T+ + Sbjct: 82 YA--------ESEALLGQMVRQDIPAGEPVTAPMLA----RGLARHLAPGERAVTIAVDE 129 Query: 139 SSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRVIAIDHN-------------- 182 S I P D VDV +V ++ S I+V+A Sbjct: 130 LSGAQNRILPGDLVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPSV 189 Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 + A L + + L+ A +L LVLRS D++ + E Sbjct: 190 AQRGQPPAAPRNAMLAVPVERVNELLLAAKAGRLQLVLRSPEDIDVPD------LALFPE 243 Query: 243 GKEIQIIKAGVIVNKDGEG 261 + ++AG+ + +G Sbjct: 244 RAPVLALRAGLTAEQQRDG 262 >gi|221213140|ref|ZP_03586116.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD1] gi|221167353|gb|EED99823.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD1] Length = 309 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 89/264 (33%), Gaps = 30/264 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M I + V I ++ + V A + ++I+ L G Sbjct: 1 MTNNLTKIIAGLLIAIAVLLGIYAWMLGRSTPRPAPVQQTIAASPVPIVIATRTLPAGQP 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + L+ P V G D L G + I P+ + LV G Sbjct: 61 IAADALKIQ--PTSPVPAGAFADAS------TLVGRVPARDIPASSPVVSDALV----SG 108 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLS 172 L+ + G+RA + + ++AVG ++P + VDV + + +++S Sbjct: 109 LAEDVQPGERAVAVRVDETNAVGNRLRPGNFVDVFLNLKREGNAMLDGEVSQTQARLLMS 168 Query: 173 NIRVIAIDHNIDSDER----------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 +RV+A + A L + Q AL ++ +L+L LR+ Sbjct: 169 KVRVLAFGDATPERDSGSNTNGSNAQPSNVRIAVLAVPTAQVDALTLGEASGRLTLALRN 228 Query: 223 IADLNPSSSEDSDVWDVQEEGKEI 246 D + + D + + Sbjct: 229 PRDDEMAMQTVAVRTDNKLSPSAL 252 >gi|257064753|ref|YP_003144425.1| Flp pilus assembly protein CpaB [Slackia heliotrinireducens DSM 20476] gi|256792406|gb|ACV23076.1| Flp pilus assembly protein CpaB [Slackia heliotrinireducens DSM 20476] Length = 273 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 93/241 (38%), Gaps = 16/241 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + + GI+ AL + A +L + Q E + + V ++ D+A G V Sbjct: 4 RKSVVFGILCGIACALCVAMYAQQLQADADAQRAEALARYGGEQTEVWVATRDIAPGETV 63 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 E+ + E + + D+ + + PI++G+ I ++ V L Sbjct: 64 DETNAEYRMWLVELLPHDAVSDLAGLES------RVATSPIVQGEVISAQRFVADDEA-L 116 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 + +P+G A ++ + VGG I+ VDV + T ++ ++ V+ Sbjct: 117 GTPVPEGLCAVSVPAEDVATVGGSIRAGSRVDVYVS-----SGTTTDLLAHDVLVLFT-- 169 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 + S + S ATL + P + L++A L L +D + + + E Sbjct: 170 SASSADGSEAISWATLAVEPEMVQELISAAERTSLYFSL--PSDSVLADGSYATESEKGE 227 Query: 242 E 242 Sbjct: 228 A 228 >gi|149175454|ref|ZP_01854075.1| hypothetical protein PM8797T_18359 [Planctomyces maris DSM 8797] gi|148845722|gb|EDL60064.1| hypothetical protein PM8797T_18359 [Planctomyces maris DSM 8797] Length = 367 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 23/228 (10%) Query: 1 MK---LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ ++ L+A I RL++ P N+ ++ +L Sbjct: 1 MKSLTPAKVTLLMFGVFGVLIAAYIGKRLLAGKE-------EAPPVATRNIPMAISELEP 53 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G +VT L +N+ + + G +V+ I PI +L Sbjct: 54 GTLVTDEHLGLGPIAIKNLKPEMMTSNRV------IVGRIVKERIPAATPISTGQL-YPA 106 Query: 118 NGGLSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTVVL 171 + G RA ++ + S V G+IKP ++VDV M + + Sbjct: 107 GETPPIQVEPGMRAISVSLESSVDLVDGLIKPGEYVDVHMTPTGMNNDKRLNGGMTLTLF 166 Query: 172 SNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + +RVIAI+ + + G+ TLELTP QA ++ A+ ++++ Sbjct: 167 NGVRVIAINRSYTQNSSSRRGTNVTLELTPEQANIMILARDRGEITMS 214 >gi|297581607|ref|ZP_06943529.1| flp pilus assembly protein CpaB [Vibrio cholerae RC385] gi|297534014|gb|EFH72853.1| flp pilus assembly protein CpaB [Vibrio cholerae RC385] Length = 294 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 103/251 (41%), Gaps = 25/251 (9%) Query: 20 GIIAMRLVSPHHVQTEEVITEN--------PAKFINVLISKGDLAVGMVVTPNILEWVAF 71 I+++ + T +++ A L +K + G ++ WV Sbjct: 16 AILSIAWMQNSRPSTSPSVSKPTAVSSLPEKAATPRALAAKYPVQAGALLRAQDFHWVEL 75 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKR 130 E+ + + + L+G L+ + + + ++ +S++L GKR Sbjct: 76 GSEHNASLNDLFLENFSQLDALEGSLITRHQDESQLLNVNDIIRPEQSHYVSAMLAPGKR 135 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-----TVVLSNIRVIAID----- 180 A T++++ + G+++P + VDVV+ + + T VL +R++AI Sbjct: 136 AVTLELTQAGVSHGLLRPGNWVDVVLTNESNVESASTPKYAATTVLEGVRLLAIGSVVTE 195 Query: 181 ----HNIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 ++++ T E++P AK L+ AQ + LSLVLRS + + + E+ Sbjct: 196 FIAKQSVENGANPNSYEPVRVTFEVSPSDAKHLLLAQRLGVLSLVLRSQFESDLAEMEEG 255 Query: 235 DVWDVQEEGKE 245 + ++ + Sbjct: 256 SILWDEQVSES 266 >gi|221197780|ref|ZP_03570826.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2M] gi|221204662|ref|ZP_03577679.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2] gi|221175519|gb|EEE07949.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2] gi|221181712|gb|EEE14113.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2M] Length = 309 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 89/264 (33%), Gaps = 30/264 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M I + V I ++ + V A + ++I+ L G Sbjct: 1 MTNNLTKIIAGLLIAIAVLLGIYAWMLGRSTPRPAPVQQTIAASPVPIVIATRTLPAGQP 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + L+ P V G D L G + I P+ + LV G Sbjct: 61 IAADALKIQ--PTSPVPAGAFADAS------TLVGRVPARDIPASSPVVSDALV----SG 108 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLS 172 L+ + G+RA + + ++AVG ++P + VDV + + +++S Sbjct: 109 LAEDVQPGERAVAVRVDETNAVGNRLRPGNFVDVFLNLKREGNAMLDGEVSQTQARLLMS 168 Query: 173 NIRVIAIDHNIDSDER----------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 +RV+A + A L + Q AL ++ +L+L LR+ Sbjct: 169 KVRVLAFGDATPERDSGSNTNGSNAQPSNVRIAVLAVPTAQVDALTLGEASGRLTLALRN 228 Query: 223 IADLNPSSSEDSDVWDVQEEGKEI 246 D + + D + + Sbjct: 229 PRDDEMAMQTVAVRTDNKLSPSAL 252 >gi|330816714|ref|YP_004360419.1| Flp pilus assembly CpaB [Burkholderia gladioli BSR3] gi|327369107|gb|AEA60463.1| Flp pilus assembly CpaB [Burkholderia gladioli BSR3] Length = 305 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 30/251 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + V AL+ GI A L PAK V+++ L G + Sbjct: 3 NNLTKILAVALIAIALLLGIFAWVLGRKPAPVVNNAQQATPAKLFPVVVAARPLKGGQPI 62 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L+ + +G D ++ G + + + + L + G+ Sbjct: 63 PADGLKVQQ--AAALPEGAFADPV------QIVGRVPIADVPEQAAVLESSL----SSGV 110 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-------------- 167 + + G+RA + + ++AVG ++P + VDV + T Sbjct: 111 ADQIAPGERAIAVKVDETNAVGNKVRPGNFVDVFLNLKKDSAAGTTLAGNGGSEVPKTQA 170 Query: 168 TVVLSNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSI 223 ++LS IRVIA + + TA L + Q AL ++ L+L LR+ Sbjct: 171 KLLLSRIRVIAFGDATTARDSSGGALNGVRTAVLAVPAAQVDALTLGEASGSLTLALRNP 230 Query: 224 ADLNPSSSEDS 234 D ++ + Sbjct: 231 RDEEVATQTVA 241 >gi|33600810|ref|NP_888370.1| hypothetical protein BB1825 [Bordetella bronchiseptica RB50] gi|33568410|emb|CAE32322.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 313 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 89/259 (34%), Gaps = 34/259 (13%) Query: 19 AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 A + +P + V+++ +A G + ++L+ +P + Sbjct: 22 AAFMLATRPAPPPPKPVVQRASAALPTYPVVVAGKPIAAGDRLAADLLKIERWPVQPANG 81 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138 + L G +VR I G+P+ L GL+ L G+RA T+ + Sbjct: 82 YA--------ESEALLGQMVRQDIPAGEPVTAPMLA----RGLARHLAPGERAVTIAVDE 129 Query: 139 SSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRVIAIDHN-------------- 182 S I P D VDV +V ++ S I+V+A Sbjct: 130 LSGAQNRILPGDLVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPSV 189 Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 + A L + + L+ A +L LVLRS D++ + E Sbjct: 190 AQRGQPPAAPRNAMLAVPVERVNELLLAAKAGRLQLVLRSPEDVDVPD------LALFPE 243 Query: 243 GKEIQIIKAGVIVNKDGEG 261 + ++AG+ + +G Sbjct: 244 RAPVLALRAGLTAEQQRDG 262 >gi|115351455|ref|YP_773294.1| CpaB family Flp pilus assembly protein [Burkholderia ambifaria AMMD] gi|115281443|gb|ABI86960.1| Flp pilus assembly protein CpaB family [Burkholderia ambifaria AMMD] Length = 301 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 89/264 (33%), Gaps = 26/264 (9%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + A++ GI A L A+ + ++++ L G + Sbjct: 3 NNLTKIIAGLLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPLVVAARVLPAGQPI 62 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L+ P + G D L G + IL P+ L GL Sbjct: 63 PADALKLAQVP--MMPTGGFSDP------TALVGRVPANDILAAAPVLEGALT----SGL 110 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----------PTVTVVL 171 + + G+RA + + S+AVG ++P + VDV + ++L Sbjct: 111 ADQVALGERAVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSEIPATQARLLL 170 Query: 172 SNIRVIAIDHNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 S +RV++ + TA L + Q AL A++ +L+L LR+ D Sbjct: 171 SRVRVLSFGDATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTE 230 Query: 228 PSSSEDSDVWDVQEEGKEIQIIKA 251 ++ + Q Sbjct: 231 IATQTVAVRTGGGGATPSAQAASG 254 >gi|330963439|gb|EGH63699.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 357 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 86/282 (30%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAK--------------- 44 M + + V + AL+AG + + + P V + P Sbjct: 39 MSSRITLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPATPPVEE 98 Query: 45 --FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + + L G + Sbjct: 99 ALRHNVVVLARDIPAYTPITAEDLVIERL--KVAPPGSFERIEI------LVGRSSWRTL 150 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G G L+ ++ +RA + + + G + P D+VDV++ Sbjct: 151 TAGTWPSESSF--DAGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDA 208 Query: 163 RKPT--VTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202 P+ VV+ +R++ I D +++ + T T+ + Sbjct: 209 SNPSRSSQVVVPALRILGIGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEA 268 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N + + Sbjct: 269 LLARLMLASQTGILRLAVRSAEEGNLQDYWAGETGSRDAAER 310 >gi|331014709|gb|EGH94765.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 357 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAK--------------- 44 M + + V + AL+AG + + + P V + P Sbjct: 39 MSSRITLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPVTPPVEE 98 Query: 45 --FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + + L G + Sbjct: 99 ALRHNVVVLARDIPAYTPITAEDLAIERL--KIAPPGSFERIDS------LVGRSSWRTL 150 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G G L+ ++ +RA + + + G + P D+VDV++ Sbjct: 151 TAGTWPSESSF--DAGGTLARMIRPYERALALQVDEVTGASGQLSPGDYVDVLLYLPEDA 208 Query: 163 RKPT--VTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202 P+ VV+ +R++ + D +++ + T T+ + Sbjct: 209 SNPSRSSQVVVPALRILGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEA 268 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N S+ + Sbjct: 269 LLARLMLASQTGILRLAVRSAEESNLQDYWASETGSRDAAER 310 >gi|84385685|ref|ZP_00988716.1| hypothetical protein V12B01_26164 [Vibrio splendidus 12B01] gi|84379665|gb|EAP96517.1| hypothetical protein V12B01_26164 [Vibrio splendidus 12B01] Length = 274 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 100/268 (37%), Gaps = 25/268 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + ++ + G++ + P T EV+ E + + V ++ G Sbjct: 1 MRSRLVLLVAITALIVGALGVVDLFKSEPQSTTTTEVVEEKNEEHVAVWMTTEPYEKGRA 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE-KLVDRGNG 119 + + P + + Q + L+ + G+ + E ++ G Sbjct: 61 IDAQGVVKQQLPLSQALTLGVREDAQISFAPS---TLLNRSLNAGEVVLPEYQVTPGQPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPTV 167 + L+ +G + +S + + I+P +D++ V S ++ R Sbjct: 118 YIDLLVTEGMTLYPLKVSDKNLINDYIRPGTSIDILTVSSPNDNLAGNIDKPKRFRGVKA 177 Query: 168 TVVLSNIRVIAIDHNIDSD--------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 ++ L N++V+ I ++ D + +T +E++P + L AQ + + Sbjct: 178 SMFLKNVKVLNIGNDATGDSSITARAPSKEDGLTTVVIEVSPDELPKLALAQRTMHIEI- 236 Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 RS P +E ++ D E++ Sbjct: 237 YRSQTYTQPEFAEVRNIIDNYTGIAELR 264 >gi|330976800|gb|EGH76835.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 329 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 93/282 (32%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45 M M + V + AL+AG + + + P V E + P Sbjct: 11 MSSRVTMVLAVLFLLGALIAGYLGIVVGRPTEVPVETPPSAPPVTTKQTTPPAPTPHVEE 70 Query: 46 ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T + L + G A+ ++ G + Sbjct: 71 ALRHNVVVLAKDIPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTL 122 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + G L+ ++ +RA + + + G + P D+VDV++ Sbjct: 123 TAGSWLTESNF--EAGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 180 Query: 163 RKP--TVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202 P + VV+ +RV+ + D + +++ + T T+ + Sbjct: 181 SNPNRSSQVVVPALRVLGVGALLGPDRNGKPVQDLNADERLKQEQQRINARTVTVAVPQA 240 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N ++ + + Sbjct: 241 LVARLMLASQTGVLRLAVRSADEGNLQDYWANEAGGPEAAER 282 >gi|148975961|ref|ZP_01812750.1| hypothetical protein VSWAT3_06606 [Vibrionales bacterium SWAT-3] gi|145964706|gb|EDK29959.1| hypothetical protein VSWAT3_06606 [Vibrionales bacterium SWAT-3] Length = 274 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 101/268 (37%), Gaps = 25/268 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + ++ + G+I + P T+EV+ E K + V IS G Sbjct: 1 MRSRLVLLVAIAALIIGALGVIDLFKSEPKPTTTDEVVAEKSEKHVGVWISTESFEKGHA 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 + + P + + Q + + L+ + GD + E V G Sbjct: 61 INAQGVVKQQLPLSEALTLGVREDAQISFSPSI---LLNRNLKAGDVVLPEYQVSPGKPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPTV 167 + L+ +G + +S + + I+P +DV+ V S + R Sbjct: 118 YIDLLVTEGMTLYPLKVSDKNLINDYIRPGSFIDVLTVSSPNANLAGNIDKPKRFRGVKA 177 Query: 168 TVVLSNIRVIAIDHNIDSD--------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 ++ L +++V+ I ++ D + +T +E++P + L AQ + + Sbjct: 178 SMFLKHVKVLNIGNDDTGDSSITARSPSKEDGLTTVVIEVSPDELPKLALAQRTMHIEI- 236 Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 RS L P +E ++ D E++ Sbjct: 237 YRSQHYLQPEFAEVRNIIDNYTGIVELR 264 >gi|87308905|ref|ZP_01091043.1| pilus assembly protein CpaB [Blastopirellula marina DSM 3645] gi|87288248|gb|EAQ80144.1| pilus assembly protein CpaB [Blastopirellula marina DSM 3645] Length = 299 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 102/270 (37%), Gaps = 24/270 (8%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M VV+ +F L++ + + + E T P K V + +L G +T + Sbjct: 1 MLGVVAVMFGLLSAYVVRKNMMKETPPVVE--TTAPPKTFVVPKAAVNLPAGRTLTLGDV 58 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLL 125 + E+ + + + + NA ++ G +R + + + G G G+ L Sbjct: 59 VIYQYTEKQLEEQPLPTGYMVNA-TQIIGRTLRQELTEKSVFTPDMFYPEGTGPGIVQNL 117 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSNIRVIAIDHN 182 G+RA T+ I AV G +P VDV+ +L +++V+A D + Sbjct: 118 GAGQRAFTVRIEYDEAVEGFARPGTKVDVLFRAEADPENELAETTVTLLQDVKVLAFDSS 177 Query: 183 I----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 R+ +T TL + P +A L A +L L D S Sbjct: 178 PSALHPIVNEQSQRLRMREYATVTLAVLPHEATKLQVADDHGTFALALV-PLDGEVVSYN 236 Query: 233 D-----SDVWDVQEEGKE-IQIIKAGVIVN 256 +++ D + ++ +++ + G I Sbjct: 237 GAPRTLAELLDRRPPLRQMMRVYRGGQISE 266 >gi|160942271|ref|ZP_02089580.1| hypothetical protein CLOBOL_07157 [Clostridium bolteae ATCC BAA-613] gi|158434828|gb|EDP12595.1| hypothetical protein CLOBOL_07157 [Clostridium bolteae ATCC BAA-613] Length = 289 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 82/217 (37%), Gaps = 19/217 (8%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G++ + L + ++ ++ ++ +G +T ++++ V N+ Sbjct: 9 VIGLLCIVLSLVICFAITPMFNRTISEKTEIVRVTKNIRIGDEITKDMVKPVEVGAYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 + + ++ E+ G + GD I K+ + + L L K+A ++ Sbjct: 69 ESVVRNID------EVIGKYASADMAPGDYIIRSKVAEEPAAENAYLYNLNGEKQAISVS 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184 + ++ + G + D V V+ + + L + VIA+ D Sbjct: 123 VKAFANGLSGKLVSGDIVSVIAPDYRKQGSTVIPPELQYVEVIAVTANSGYDANTGERGD 182 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + + T TL +TP Q + L ++ KL L L Sbjct: 183 EETEKELPGTVTLLVTPDQGRVLAELEADGKLHLSLV 219 >gi|28871965|ref|NP_794584.1| hypothetical protein PSPTO_4850 [Pseudomonas syringae pv. tomato str. DC3000] gi|28855218|gb|AAO58279.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] Length = 357 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAK--------------- 44 M + + V + AL+AG + + + P V + P Sbjct: 39 MSSRITLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPVTPPVEE 98 Query: 45 --FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + + L G + Sbjct: 99 ALRHNVVVLARDIPAYTPITAEDLAIERL--KIAPPGSFERIDS------LVGRSSWRTL 150 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G G L+ ++ +RA + + + G + P D+VDV++ Sbjct: 151 TAGTWPSESSF--DAGGTLARMIRPYERALALQVDEVTGASGQLSPGDYVDVLLYLPEDA 208 Query: 163 RKPT--VTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202 P+ VV+ +R++ + D +++ + T T+ + Sbjct: 209 SNPSRSSQVVVPALRILGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEA 268 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N S+ + Sbjct: 269 LLARLMLASQTGILRLAVRSAEESNLQDYWASETGSRDAAER 310 >gi|163857692|ref|YP_001631990.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804] gi|163261420|emb|CAP43722.1| putative Flp pilus assembly protein [Bordetella petrii] Length = 320 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 33/228 (14%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 V+++ D+ G + +L+ +P ++L G + R+ I Sbjct: 54 TYPVVLAAKDIQAGTRLDAGMLKVQQWPIPLAHGYA--------KPEDLAGQVARLDIAG 105 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER- 163 G+PI + L GL+ L G+RA + + G I P D VDV Sbjct: 106 GEPITNQSLAQ----GLAQQLRDGERAVAVPVDEIVGAGNRITPGDLVDVFFALEKDNEV 161 Query: 164 -KPTVTVVLSNIRVIAIDHN-------------IDSDERVLVGSTATLELTPMQAKALVA 209 V ++ S +RV+A + +A L + + L+ Sbjct: 162 KGSQVRLLQSRVRVLAYGAQSIDGPPVASDKPVVQRGASPAPARSALLAVPVERVNELLL 221 Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 A L L LR+ +D D+ + + +AG+ + Sbjct: 222 ASRSGHLQLALRAPSDEALPD------RDLFVPREAVISARAGLTAEQ 263 >gi|254252521|ref|ZP_04945839.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158] gi|124895130|gb|EAY69010.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158] Length = 308 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 94/262 (35%), Gaps = 34/262 (12%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 + G++++ L A + SP +++ NP F+ I+ L G + Sbjct: 7 KIIAGLLIAIAVLLGAYAWMLGRSSPAPAPAPQIVAANPMPFV---IATRTLPAGQPIAA 63 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 + L+ + ++ G + E+ G + I PI LV GL+ Sbjct: 64 DALKVQS--TTSIPAGAFANP------GEVVGRVPAKDIAASSPIVAGALV----SGLAE 111 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---------PTVTVVLSNI 174 + G+RA + + ++AV ++P + VDV + ++LS + Sbjct: 112 DVQPGERAVAIRVDETNAVANRLRPGNFVDVFLNLKRDGGGAMLDGEISQTQARLLLSRV 171 Query: 175 RVIAIDHNIDSDER----------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 RV++ + A L + Q AL ++ +L+L LR+ Sbjct: 172 RVLSFGDATPERDSGSSTNGSNGQPSSVRIAVLAVPTAQVDALTLGEASGRLTLALRNPR 231 Query: 225 DLNPSSSEDSDVWDVQEEGKEI 246 D ++ + D + + Sbjct: 232 DDELATQTVAVRTDNKRSPSAL 253 >gi|83719123|ref|YP_443060.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis E264] gi|83652948|gb|ABC37011.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis E264] Length = 292 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 91/265 (34%), Gaps = 27/265 (10%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L + V+++ L G + + L+ Sbjct: 1 MLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADALKVQQ 60 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P + G + I+ P+ +L+ GL+ + G+R Sbjct: 61 TPAPIA--------GAFPNPTLVTGRIPANDIVAQAPVLESELM----SGLADQIAPGER 108 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAIDH 181 A + + ++AVG ++P + VDV + + ++LS +RV++ Sbjct: 109 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVLSFGD 168 Query: 182 NIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 + TA L + Q AL A++ +L L LRS D + + + + Sbjct: 169 ATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDDDVA-TRTVAM 227 Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEG 261 G + V+ G G Sbjct: 228 RASGAGGPSNEAATGLVLGELSGSG 252 >gi|291525761|emb|CBK91348.1| Flp pilus assembly protein CpaB [Eubacterium rectale DSM 17629] Length = 282 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 19/226 (8%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V GI + + ++ +K + ++ + +T ++L+ V N+ Sbjct: 9 VLGIFCIAVSLIICFAITPLVNAGLSKKVTIVRFNRQVNEREEITRSMLDEVEVGNHNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 + I ++ +++G + + GD I +K+ D L L K+A ++ Sbjct: 69 ENVIRNIA------DVEGKYLTTTVYAGDYILTDKISDEPAAENKYLYSLNGEKQAMSIT 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184 I+ + + G +K D V V+ L + + V L + VIA+ + Sbjct: 123 INTFAEGLSGKLKSGDIVSVIAPDYLGSGETIIPVELKYVEVIAVTAKSGYDANTGEQMS 182 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 ++ + ST T+ + P Q+K L ++ ++ L L D + +S Sbjct: 183 EEDEKELPSTVTILVRPEQSKLLARLEAEGEIHLSLVFRGDADKAS 228 >gi|253687067|ref|YP_003016257.1| Flp pilus assembly protein CpaB [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753645|gb|ACT11721.1| Flp pilus assembly protein CpaB [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 314 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 50/272 (18%), Positives = 98/272 (36%), Gaps = 44/272 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ + + V A + ++ +S + + I VL++ DL G Sbjct: 1 MKVNSTYVLSGAFVLAGIVALVVRSHLSS-EPPAPPPVVAKAPEKIAVLVAAKDLHPGDF 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + + + W E + L G +R + +G + +V G Sbjct: 60 IDSSSVRWQTTDESVSRSFNFVRGRDSQFL--LFGATLRETVKEGTQLSSNVVVKPNEPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------- 166 ++++L KG RA ++ S ++ G++ D VDV++ ++ Sbjct: 118 FVAAVLHKGMRAISVPTSAIASNAGLVSAGDRVDVILSMRRDDQSELPVSRNQPVVMPLL 177 Query: 167 -VTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199 ++ ++RV+A++ + + R T TLE+ Sbjct: 178 ASQTIVRDLRVLALNDKVGTPVYPRLDAMEDGAALDAAAKSRESAVRSRPATYQTVTLEV 237 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 TP QA+AL A+ + L L LRS + Sbjct: 238 TPQQAEALTVAKELGILHLSLRSATQDDVVDP 269 >gi|167836690|ref|ZP_02463573.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis MSMB43] Length = 351 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 29/245 (11%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ + + V A + + L + + V + DL G+++ Sbjct: 1 MSNIFKLAALTVIAAIGAFVMRGLF----IAASRPVPPPAPVMARVRAAAADLPEGLLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121 + L W + P + V G + +L G L+R + +G PI ++ G L Sbjct: 57 DSDLVWKSVPRDQVPPGAWAEGEP--GGSDLKGNLLRHMVREGTPIGAGDVISPNAPGFL 114 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---------LSERKPTVTVVLS 172 ++ L G RA ++ I S G+I+P D+VDV++ + + V S Sbjct: 115 AAALKLGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLGTSGGPPVPPDHAIVSETVAS 174 Query: 173 NIRVIAIDHNIDSDERVLV-------------GSTATLELTPMQAKALVAAQSVAKLSLV 219 +RV+A+ + T TLE+TP A+A+ A + LSL Sbjct: 175 RVRVLAVGSVFQRPKDDAAQTNSNSNSNSSARARTVTLEVTPFYAQAITLASHLGSLSLA 234 Query: 220 LRSIA 224 LRS A Sbjct: 235 LRSFA 239 >gi|226325180|ref|ZP_03800698.1| hypothetical protein COPCOM_02972 [Coprococcus comes ATCC 27758] gi|225206528|gb|EEG88882.1| hypothetical protein COPCOM_02972 [Coprococcus comes ATCC 27758] Length = 497 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 12/227 (5%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 G+ V V A ++ + I E + V+ + + G ++ Sbjct: 278 KVTAGLAVIAVLAGGVAVV-------SEIDANNRIAEAFSGTTEVVAATKTIHAGDEISA 330 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR-LEKLVDRGNGGLS 122 + L +V+ P V DG I ++ + G + I KG + L+ Sbjct: 331 SDLAFVSVPNSTVADGAITKKDIDDSSKTPVGRVATQYIAKGSQLTNASTAGKDNPESLA 390 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID-H 181 + + G A T+ + S +GGM++ ND V V+ S TV+ ++R+ A+D + Sbjct: 391 AAIGDGMEAVTISVDAQSGMGGMLRVNDRVKVIQPNDGSLGGDGFTVIADSVRIAALDGN 450 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 ST TLE+TP QA + ++ L+L L S AD Sbjct: 451 FSSGSGSSDGYSTVTLEVTPEQAGKI---RTAGGLTLTLPSSADTTE 494 >gi|91775996|ref|YP_545752.1| Flp pilus assembly CpaB [Methylobacillus flagellatus KT] gi|91709983|gb|ABE49911.1| Flp pilus assembly CpaB [Methylobacillus flagellatus KT] Length = 299 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 100/276 (36%), Gaps = 36/276 (13%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 + + + + A ++ + H + PA +++++ D+ G V+ P L Sbjct: 8 ITAILLFIGAVLVGWYGIRAGHQPEIQAPAPLPAVLYPLVVARQDIPAGHVLLPEDLALE 67 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 + + +A +L G +V I K PI G + LL G+ Sbjct: 68 ESESQ--------NPLAYSATTDLVGRMVESSIEKNAPILSSHFA--QRGPAAQLLKHGE 117 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAIDHNIDS- 185 R + + VGG I+P DHVDV++ + S + +L ++RVI+ + Sbjct: 118 RGVAIKVDEVVGVGGFIQPGDHVDVLVYINSSNGMTTDSSAQSILRDVRVISYGDALQQN 177 Query: 186 ---------------------DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 + L G +A + + L+ A S L L LR + Sbjct: 178 VSSSNVSPGPASMLADNGSTSKPQALSGHSAVIAVKEEDVSRLMLAASGGTLRLSLRGAS 237 Query: 225 -DLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259 D+ SS+ + ++ + ++ +V Sbjct: 238 PDVAKKSSDLVRLSEITGSQQPVKAPSLPKVVKAAP 273 >gi|134295594|ref|YP_001119329.1| SAF domain-containing protein [Burkholderia vietnamiensis G4] gi|134138751|gb|ABO54494.1| SAF domain protein [Burkholderia vietnamiensis G4] Length = 314 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 90/264 (34%), Gaps = 32/264 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + A++ G A ++ + A V+I+ L G + Sbjct: 3 NNVTKIIAGLLIAIAVLLGFYAW-MLGRSASHSVPAQPAVAANPAPVVIATRTLPAGQPI 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + ++ A +V G + D + G + I PI + LV GL Sbjct: 62 AADAVKLQAI--ASVPTGAVVDPA------TVVGRVPARDIPASAPITPDALV----SGL 109 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---------PTVTVVLS 172 + + G+RA + + ++AVG ++P + VDV + +++S Sbjct: 110 AEDIQPGERAIAVRVDETNAVGNRLRPGNFVDVFLNLKREGGGAMFDGEVSQTQARLLMS 169 Query: 173 NIRVIAIDHNIDSDER----------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 +RV++ + A L + Q AL ++ +L+L LR+ Sbjct: 170 KVRVLSFGDATPERDSGSTTNGSNGQPSNARIAVLAVPTAQVDALTLGEATGRLTLALRN 229 Query: 223 IADLNPSSSEDSDVWDVQEEGKEI 246 D + + D + + Sbjct: 230 PRDDELAMQTVAVRTDNKLSPSAL 253 >gi|187251613|ref|YP_001876095.1| pilus assembly protein [Elusimicrobium minutum Pei191] gi|186971773|gb|ACC98758.1| Pilus assembly protein [Elusimicrobium minutum Pei191] Length = 253 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 99/259 (38%), Gaps = 32/259 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + +V++ + A+V II + E +K V+I+ DL V Sbjct: 1 MKKGVFLPLVIAILAAVVYFIILFS---------NQSKFEENSKLERVVIAIRDLPERKV 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNG 119 +T L + P + + + + + ++ R+ I KG+ + L Sbjct: 52 ITKGDLGVIEMPNKFLQKDAFTVTRDSDITKLENNLVTRIAIPKGNQVSKAALTSLSPEA 111 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-----SERKPTVTVVLSNI 174 GLS+ + R + + S+V +IKP+D VDV++ +++ +L I Sbjct: 112 GLSARVSPLWRGF-VLTDVPSSVANLIKPDDWVDVLLTFDAYMKNTGQKEKITATILQRI 170 Query: 175 RVIAIDHNIDSDERVLV----------------GSTATLELTPMQAKALVAAQSVAKLSL 218 +V+ + +++ S +L L P A+ L A+ ++L Sbjct: 171 KVLGVGNDLGQGMDANQLRATREREASASAFNDSSAISLALHPRDAQYLALAKEEGIITL 230 Query: 219 VLRSIADLNPSSSEDSDVW 237 V+R D S + + Sbjct: 231 VVRRREDQGVHSIAIASLT 249 >gi|167628702|ref|YP_001679201.1| hypothetical protein HM1_0585 [Heliobacterium modesticaldum Ice1] gi|167591442|gb|ABZ83190.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1] Length = 270 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 82/226 (36%), Gaps = 19/226 (8%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G+I + L + +K +++ D+ G +T ++++ V N+ Sbjct: 9 VLGVICIALSLFICFAVTPLFNSGISKKTDIVRVARDIKAGEQITRDMVKTVEVGSYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 D + ++ G + GD I KL D + L L K+A ++ Sbjct: 69 DNVVR------SLDAALGKYAAADMAPGDYILNTKLTDSPAAENAYLYNLTGEKQAMSVT 122 Query: 136 I-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVL---- 190 I S S+ + G + D V V+ + L + VI + + D Sbjct: 123 IKSFSNGLSGKLISGDIVSVIAPDYRKMGATVIPPELKYVEVIGVTASSGYDTDTSHGLK 182 Query: 191 ------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + +T TL ++P Q+ L ++ KL L L ++ Sbjct: 183 KEDEKQLPATVTLLVSPEQSTILAGLEADGKLHLSLVYRGSKENAA 228 >gi|156977410|ref|YP_001448316.1| hypothetical protein VIBHAR_06197 [Vibrio harveyi ATCC BAA-1116] gi|156529004|gb|ABU74089.1| hypothetical protein VIBHAR_06197 [Vibrio harveyi ATCC BAA-1116] Length = 274 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 103/268 (38%), Gaps = 25/268 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + ++ + G++ + +P EV+ + +++ V ++ G Sbjct: 1 MRSRLVLLVAIAALIVGALGVVDLFKSNPQPKANTEVVEKPNEEYVAVWVTTKAYEKGHA 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + FP + + Q N + L+ + KG + E V G G Sbjct: 61 FDAQGVAKQQFPLSEALVLGVREDAQINFSPSV---LLNRSLEKGAVVLPEYQVSPGQAG 117 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPTV 167 + L+ +G +++S + + I+P ++D++ V S ++ R Sbjct: 118 YIDLLVTEGMTLYPLEVSDQNLINDYIRPGSYIDILTVSSPNDNLAKNIDKPKRFRGLKA 177 Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGS--------TATLELTPMQAKALVAAQSVAKLSLV 219 ++ L +++V+ I + + D V S T +E+ P L AQ + + Sbjct: 178 SMFLKHVKVLNIGGDDEGDSSVTARSPINEDGLTTVVIEVKPDDLAKLALAQRTMHIEI- 236 Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 RS P +E +V D +E++ Sbjct: 237 YRSQTYNKPEYAEVRNVIDNYTGIEELR 264 >gi|228969250|ref|ZP_04130128.1| hypothetical protein bthur0004_59710 [Bacillus thuringiensis serovar sotto str. T04001] gi|228790443|gb|EEM38166.1| hypothetical protein bthur0004_59710 [Bacillus thuringiensis serovar sotto str. T04001] Length = 286 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ + V A VAGI EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIVAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L +G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKEGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVIEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|220930147|ref|YP_002507056.1| SAF domain protein [Clostridium cellulolyticum H10] gi|220000475|gb|ACL77076.1| SAF domain protein [Clostridium cellulolyticum H10] Length = 294 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 24/229 (10%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G+I + L + + ++ ++ D+ G +T N+++ V N+ Sbjct: 9 VLGVICILLSLVICFAVTPLFNSSISQRTKIVRVSRDIKAGDKITGNMVQIVEVGSYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 G I + + G + GD I KL S L L K+A ++ Sbjct: 69 SGVIKNKD------DAIGKYASADMKTGDYIFNTKLSAAPAAENSYLYSLNGEKQAMSVT 122 Query: 136 I-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV--- 191 + S +S + G + D V V+ ++ + L + VI + + D Sbjct: 123 VGSFASGLSGKLMSGDIVSVIAPDYKNQGTAVIPEELQYVEVIGVTASTGYDTNTSENTE 182 Query: 192 ----------GSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNP 228 ST TL ++ +Q+K L A +S KL L L R I + Sbjct: 183 KQTGNKEKELPSTVTLLVSAVQSKTLAALESDGKLHLSLVYRGIKENAE 231 >gi|213968017|ref|ZP_03396163.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301383667|ref|ZP_07232085.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tomato Max13] gi|302059964|ref|ZP_07251505.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tomato K40] gi|302131630|ref|ZP_07257620.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927360|gb|EEB60909.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 357 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 88/282 (31%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAK--------------- 44 M + + V + AL+AG + + + P V + PA Sbjct: 39 MSSRITLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPAAIEQPAQTPVTPPVEE 98 Query: 45 --FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + + L G + Sbjct: 99 ALRHNVVVLARDIPAYTPITVEDLAIERL--KIAPPGSFERIDS------LVGRSSWRTL 150 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G G L+ ++ +RA + + + G + P D+VDV++ Sbjct: 151 TAGTWPSESSF--DAGGTLARMIRPYERALALQVDEVTGASGQLSPGDYVDVLLYLPEDA 208 Query: 163 RKPT--VTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202 P+ VV+ +R++ + D +++ + T T+ + Sbjct: 209 SNPSRSSQVVVPALRILGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEA 268 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N S+ + Sbjct: 269 LLARLMLASQTGILRLAVRSAEESNLQDYWASETGSRDAAER 310 >gi|113867003|ref|YP_725492.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16] gi|113525779|emb|CAJ92124.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16] Length = 343 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 106/262 (40%), Gaps = 30/262 (11%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 + + +S +E + + + V++ + A G V+ N P + Sbjct: 26 GLLTLWIYHFLSGREAALKEQLAAQLNEGRRVAVMVPVRNAAPGTVIDGNGFAAREIPAD 85 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATM 134 V++ I ++ ++ + + + +G P+R + + S LL GKRA T+ Sbjct: 86 LVYEDMI----LASSFDKVANLRLVRQVRQGQPVRRADVEALQSRDFSDLLKPGKRAFTI 141 Query: 135 DISISSAVGGMIKPNDHVDVVMVRSLS-----ERKPTVTVVLSNIRVIAIDHNIDSDERV 189 ++ + ++ M+KP +HVD+ ++ S S K T +++S++ V+A ++ + Sbjct: 142 EVDMVNSTAKMLKPGNHVDLFLISSTSPTAAGTDKQTARLLMSDMLVLATGQDVRPRDYG 201 Query: 190 LV-----------------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 + TL ++P QA L AQ V L VLR+ AD + Sbjct: 202 EAMAAQAAEGAEGVDTNPDYDSLTLMVSPEQAARLALAQKVGSLRAVLRNAADKTATPQI 261 Query: 233 DSDVWDVQEEGKE--IQIIKAG 252 + G E I+ I G Sbjct: 262 AVSEHALFAGGDEAAIEYIVGG 283 >gi|187926426|ref|YP_001892771.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J] gi|241665913|ref|YP_002984272.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D] gi|187728180|gb|ACD29344.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J] gi|240867940|gb|ACS65600.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D] Length = 307 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 90/244 (36%), Gaps = 28/244 (11%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 S H ++ V+++ L G +T + + P DV Sbjct: 25 WKSAHRPPAPVAEQKDGKAVYPVVVTTKPLEAGKPITADQVAIEQLPIN--PAEAFSDV- 81 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 ++ G +P+ G P+ +L + GL+ + G+RA +++ VG Sbjct: 82 -----TKVVGREPILPVGVGVPLIASQL----SSGLAQQVEAGQRAVAINVDEVVGVGNR 132 Query: 146 IKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDE------------RVL 190 + P D+VDV +V ++ ++L ++RV+A ++ +V Sbjct: 133 VMPGDYVDVFLVMRKDGQEIEDSQARLLLPHLRVLAFGPLAINEGPQKQPENSGVTRKVD 192 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK-EIQII 249 TA L + L A +L L LR+ D + + D + + + + Sbjct: 193 QAKTAVLAVPVEAVSQLAMAHQSGRLLLALRNPGDDAEPTVKPQDAALLAAANRNPMDVA 252 Query: 250 KAGV 253 +AGV Sbjct: 253 QAGV 256 >gi|309778770|ref|ZP_07673543.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA] gi|308922478|gb|EFP68102.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA] Length = 307 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 91/244 (37%), Gaps = 28/244 (11%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 S H ++ V+++ L G +T + + P DV Sbjct: 25 WKSAHRPPAPVAEQKDGKAVYPVVVTTKPLEAGKPITADQVAIEQLPIN--PAEAFSDV- 81 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 ++ G +P+ G P+ +L + GL+ + G+RA +++ VG Sbjct: 82 -----TKVVGREPILPVGVGVPLIASQL----SSGLAQQVEAGQRAVAINVDEVIGVGNR 132 Query: 146 IKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDE------------RVL 190 + P D+VDV +V ++ ++L ++RV+A ++ +V Sbjct: 133 VMPGDYVDVFLVMRKDGQEIEDSQARLLLPHLRVLAFGPLAVNEGPQKQPESNNVTRKVD 192 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK-EIQII 249 TA L + LV A +L L LR+ D + + D + + + + Sbjct: 193 QAKTAVLAVPVEAVSQLVMAHQSGRLLLALRNPGDDAEPTVKPQDAALLAAANRNPMDVA 252 Query: 250 KAGV 253 +AGV Sbjct: 253 QAGV 256 >gi|330989177|gb|EGH87280.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. lachrymans str. M301315] Length = 319 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 84/282 (29%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45 M + V + AL+AG + + + P P Sbjct: 1 MSSRITTVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPVATEISTQTPPTPPVED 60 Query: 46 ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + +L G + Sbjct: 61 ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSTWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + G L+ ++ +RA + + G + P D+VDV++ Sbjct: 113 TAGTWLSENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170 Query: 163 RKP--TVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202 + VV+ +RV+ + D + +++ + T T+ + Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPET 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N S+ + Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNIQDYWASEAGSRDAAER 272 >gi|330873640|gb|EGH07789.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 319 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAK--------------- 44 M + + V + AL+AG + + + P V + P Sbjct: 1 MSSRITLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPATPPVEE 60 Query: 45 --FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + + + L G + Sbjct: 61 ALRHNVVVLARDIPAYTPITAEDLIIERL--KVAPPGSFERI------ESLVGRSSWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G G L+ ++ +RA + + + G + P D+VDV++ Sbjct: 113 TAGTWPSESSF--DAGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDA 170 Query: 163 RKPT--VTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202 P+ VV+ +RV+ + D +++ + T T+ + Sbjct: 171 SNPSRSSQVVVPALRVLGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N + + Sbjct: 231 LLARLMLASQTGILRLAVRSAEEDNLQDYWAGETGSRDAAER 272 >gi|208702085|ref|YP_002267403.1| Flp pilus assembly protein CpaB [Bacillus cereus H3081.97] gi|208657940|gb|ACI30310.1| Flp pilus assembly protein CpaB [Bacillus cereus H3081.97] Length = 286 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 87/242 (35%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ + V A VAGI EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIVAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----VNKKEIVGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KKELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|330892475|gb|EGH25136.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. mori str. 301020] Length = 319 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 82/282 (29%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45 M M + V + AL+AG + + + P P Sbjct: 1 MSSRITMVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPVATEISTQTPPTPPVED 60 Query: 46 ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + +L G + Sbjct: 61 ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSTWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + G L+ ++ +RA + + G + P D+VDV++ Sbjct: 113 TAGTWLSENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170 Query: 163 RKP--TVTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPM 202 + VV+ +RV+ + + D T T+ + Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N + S+ + Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272 >gi|44004393|ref|NP_982061.1| hypothetical protein BCE_A0054 [Bacillus cereus ATCC 10987] gi|190015216|ref|YP_001966616.1| hypothetical protein pPER272_AH820_0071 [Bacillus cereus] gi|190015481|ref|YP_001966942.1| hypothetical protein pPER272_0071 [Bacillus cereus] gi|190015561|ref|YP_001967244.1| hypothetical protein BcAH187_pCER270_0101 [Bacillus cereus] gi|217956754|ref|YP_002335848.1| Flp pilus assembly protein CpaB [Bacillus cereus AH187] gi|218848261|ref|YP_002454968.1| Flp pilus assembly protein CpaB [Bacillus cereus AH820] gi|229020887|ref|ZP_04177586.1| hypothetical protein bcere0030_53460 [Bacillus cereus AH1273] gi|229027753|ref|ZP_04183934.1| hypothetical protein bcere0029_59380 [Bacillus cereus AH1272] gi|229035191|ref|ZP_04189127.1| hypothetical protein bcere0028_52090 [Bacillus cereus AH1271] gi|229113409|ref|ZP_04242860.1| hypothetical protein bcere0018_55820 [Bacillus cereus Rock1-15] gi|229142563|ref|ZP_04271044.1| hypothetical protein bcere0013_56190 [Bacillus cereus BDRD-ST26] gi|229164946|ref|ZP_04292761.1| hypothetical protein bcere0009_56190 [Bacillus cereus R309803] gi|42741459|gb|AAS44904.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gi|116584468|gb|ABK00585.1| hypothetical protein BcAH187_pCER270_0101 [Bacillus cereus] gi|116584892|gb|ABK01007.1| hypothetical protein pPER272_AH820_0071 [Bacillus cereus] gi|116585162|gb|ABK01271.1| hypothetical protein pPER272_0071 [Bacillus cereus] gi|217068624|gb|ACJ82872.1| Flp pilus assembly protein CpaB [Bacillus cereus AH187] gi|218540312|gb|ACK92708.1| Flp pilus assembly protein CpaB [Bacillus cereus AH820] gi|228618530|gb|EEK75541.1| hypothetical protein bcere0009_56190 [Bacillus cereus R309803] gi|228640857|gb|EEK97207.1| hypothetical protein bcere0013_56190 [Bacillus cereus BDRD-ST26] gi|228670023|gb|EEL25415.1| hypothetical protein bcere0018_55820 [Bacillus cereus Rock1-15] gi|228728083|gb|EEL79123.1| hypothetical protein bcere0028_52090 [Bacillus cereus AH1271] gi|228733545|gb|EEL84348.1| hypothetical protein bcere0029_59380 [Bacillus cereus AH1272] gi|228740419|gb|EEL90718.1| hypothetical protein bcere0030_53460 [Bacillus cereus AH1273] Length = 286 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 87/242 (35%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ + V A VAGI EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIVAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----VNKKEVVGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|168703131|ref|ZP_02735408.1| flp pilus assembly protein [Gemmata obscuriglobus UQM 2246] Length = 442 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 99/268 (36%), Gaps = 34/268 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ +VV+ LVA + ++ P + + V+++ DL VG + Sbjct: 1 MKQKNVILMVVAVGCGLVAAFLTAQMS------------AKPIEQMEVVVAAKDLPVGTM 48 Query: 61 VTPNIL----EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + L + V P+E + + + +EL + PI + I + L Sbjct: 49 LGKEDLKAAVKIVKRPKEGLPPTVVLNP------EELVDKRLSRPIRAEEVINSQDLSK- 101 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 G LP+G ++ + A G + P V+V L K +L ++ V Sbjct: 102 ---GGVITLPEGYHMVSLQLGAGQAAAGFVGPGSRVNVHATMRL-GNKIEAFPLLVDMLV 157 Query: 177 IAIDHNIDSDERVLVGST--ATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSED 233 +A+ + + + + QA L A+S + L+LR + S Sbjct: 158 VAVGTETAYSKEGTFPNLNMVSFAVQEKQALLLSLAKSRGCNIELMLRHPGESIESD--- 214 Query: 234 SDVWDVQEEGKEIQIIKAGVIVNKDGEG 261 +++ E K++ K V GE Sbjct: 215 -KAFNIDEVIKKLSDEKNPAQVTGAGES 241 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 3/89 (3%) Query: 30 HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNA 89 ++ P + VL++K D+ +T +++ F E + F Sbjct: 264 TPPAPQQKPEPPPIPMVKVLVAKSDIKPNTEITADLIR-EEFEEATLPKQF--AGGALGD 320 Query: 90 MQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + E G +R + KG + + + Sbjct: 321 LNEALGQFLRTGVAKGQWVTPGMVGIQSP 349 >gi|59713402|ref|YP_206177.1| tungstate-binding protein precursor [Vibrio fischeri ES114] gi|59481650|gb|AAW87289.1| tungstate-binding protein precursor [Vibrio fischeri ES114] Length = 261 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 102/270 (37%), Gaps = 22/270 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ + + + + G+ + + +I I V K ++ Sbjct: 1 MKAKIIVVLAMITILFGLYGLAGSLSM----FAPQNIIKPKEENKIKVWQLKENVNARDE 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119 + ++ V PE + + G + R + KGD I +E + + Sbjct: 57 INRRLVSLVLLPESEANKLSFSED---VPINWNRGTIYRHDLKKGDYISMEDFITPEEDN 113 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---------VV 170 + ++ + + I +GG+I VDV+ + E + + + Sbjct: 114 YIEYVIAPNRVPFPLPIDSPDIIGGVIGNGSFVDVLALTKSDENRNSNRATKKTLSITPI 173 Query: 171 LSNIRVIAIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 ++I+V+ + + + R+ LELT QA L+ A+ AK+ V +SI + + Sbjct: 174 FTSIKVLQVKRTVIPETRIEPAKEGIVLILELTRSQAVELIVAKEAAKIE-VHKSIGNYS 232 Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 + ++ DV ++ + + +A + K Sbjct: 233 IEDLK-ANAGDVLDDFRAVTEYRANKVTIK 261 >gi|264680619|ref|YP_003280529.1| signal peptide protein, CpaB like protein [Comamonas testosteroni CNB-2] gi|262211135|gb|ACY35233.1| putative signal peptide protein, CpaB like protein [Comamonas testosteroni CNB-2] Length = 329 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 27/244 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K+ + + V+ + ++A +P P ++V+++ + G V+ Sbjct: 6 KIAVGVLLAVALALGIYGWMLAKAPQTPDPQAQTSASDSKPNANVSVVMASQPIPAGQVL 65 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 L+ + P + DG ++ Q G + V I KG P+ ++V GL Sbjct: 66 KAEDLQVLQLPA--IPDGAYSEI------QAAVGSVPAVDIPKGAPVLQGQMV----TGL 113 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSNIRVIA 178 + + +G+RA + + + VG I+P D VDV + ++LS RV+A Sbjct: 114 ALKVSEGERAVAVKVDENIGVGNRIRPGDFVDVFFALRRDGNEIDQSQARLLLSRKRVLA 173 Query: 179 ID------------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 TA L + + L+ S L L LR+ D+ Sbjct: 174 YGAASVDALSSAEKTEGKQANGPDNARTAVLAVPVAEVSQLLLGGSNGSLLLALRNPTDM 233 Query: 227 NPSS 230 Sbjct: 234 TEPD 237 >gi|302387183|ref|YP_003823005.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1] gi|302197811|gb|ADL05382.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1] Length = 283 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 85/232 (36%), Gaps = 26/232 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V GV +V ++ ++P + + ++ ++ VG V+T + ++ V Sbjct: 9 VVGVLCIVLSLLICFGLTPLFNKGIS-------QKTEIVRVTKEIKVGEVITQDKVKTVE 61 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128 N+ + I + G + GD I K+ + + L L Sbjct: 62 VGGYNLPENVIRT------KENAVGTYALADLSIGDYILNTKVSKTPSAENAYLYHLDGS 115 Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179 K+A ++ I S+ + G ++ D V V+ + + L + VI++ Sbjct: 116 KQAISITIKSFSNGLSGKLQSGDIVSVIAPDYKKQGATVIPPELKYVEVISVTASNGYDA 175 Query: 180 --DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 S + + ST TL +TP Q L + +S K L L + + Sbjct: 176 NTGEQETSKDEKELPSTVTLLVTPEQGNLLASLESDGKTHLSLVYRGEESNV 227 >gi|152980658|ref|YP_001355007.1| CpaB pilus assembly protein [Janthinobacterium sp. Marseille] gi|151280735|gb|ABR89145.1| CpaB pilus assembly protein [Janthinobacterium sp. Marseille] Length = 317 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 82/249 (32%), Gaps = 29/249 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN--VLISKGDLAVG 58 M + V+ + A+ +A + EV T N K V+ + L G Sbjct: 1 MNKLTKIIAVILVLLAVTLAALAWWMGHRPPPPPVEVKTANMPKTAEYAVVAAAKKLEKG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 +T + ++ V P + ++ G + V I + E+LV Sbjct: 61 KQITADSVKLVTLP--------MTANGTYANAGDVIGKIPAVEIAADTLVTEEQLVK--- 109 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIRV 176 GL+ L +G+RA + + VG I D+VDV ++ S RV Sbjct: 110 -GLALKLAEGERAVAISVDEVVGVGNRIAAGDYVDVFFTLKKGNDVDIGQSRLLASRRRV 168 Query: 177 IAIDHNI-------------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 + + + TA L Q L+ A +L+LVLR Sbjct: 169 LTYGGATMGEAQASPNALANNQTAQQSQARTAVLATPIDQVNQLLLASQNGRLTLVLRHP 228 Query: 224 ADLNPSSSE 232 D + Sbjct: 229 DDTGVADMS 237 >gi|117619605|ref|YP_855990.1| Flp pilus assembly protein CpaB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561012|gb|ABK37960.1| Flp pilus assembly protein CpaB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 296 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 93/244 (38%), Gaps = 22/244 (9%) Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87 + + A+ VL++ + G + P L W P + + Sbjct: 30 TAVPPGEQAPEPAASARLAQVLVAAHRVQAGAFIHPEDLVWQTLPAAEEMNLPGLFLFGF 89 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMI 146 + L G LV + G + + LV LS+++ G RA T+ + +A G+I Sbjct: 90 TDTKALKGSLVTRTLEAGQIVSADDLVRPEQSHYLSAMMAPGMRAVTLALGREAASHGLI 149 Query: 147 KPNDHVDVVMVRSLSERK----------PTVTVVLSNIRVIAIDHNIDS---------DE 187 +P + VDV++ + ++ + ++L++I+++AID + + Sbjct: 150 RPGNRVDVILTSKHTHQRNAQGAEVTSKQSAEIILTDIKLLAIDAQVTDIAALNGTVAAQ 209 Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 T EL P A L+ A + +L+LVLRS + ++ Q Sbjct: 210 DNFDQVAVTFELAPSAAARLLLAHRLGELALVLRSA--QAAPTGSEAVTLPAGSLIWAEQ 267 Query: 248 IIKA 251 + + Sbjct: 268 VARG 271 >gi|302185188|ref|ZP_07261861.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. syringae 642] Length = 319 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 88/282 (31%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45 M + + V + AL+AG + + + P T + P Sbjct: 1 MSSRITLVLAVLFLLGALIAGYLGIAVSKPAEAPTVVIPPSEPVTTETAIQTPPTPPVED 60 Query: 46 ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T + L + G A+ ++ G + Sbjct: 61 ALRHNVVVLARDIPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + G L+ ++ +RA + + + G + P D+VDV++ Sbjct: 113 TAGSWLTESNF--EAGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDA 170 Query: 163 RKP--TVTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPM 202 P + VV+ +R++ + + D T T+ + Sbjct: 171 SNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRIHARTVTVAVPQT 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N + ++ + Sbjct: 231 LVARLMLASQTGVLRLAVRSADEGNLQNYWANETGSPDAAER 272 >gi|238027563|ref|YP_002911794.1| Flp pilus assembly CpaB [Burkholderia glumae BGR1] gi|237876757|gb|ACR29090.1| Flp pilus assembly CpaB [Burkholderia glumae BGR1] Length = 308 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 95/251 (37%), Gaps = 30/251 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 LT+++ + + + L+ M P V + AK + V+++ L G+ + Sbjct: 4 NLTKVLAVALIAIAVLLGAYAWMLGSRPSSVPRVQGSQPAQAKLVPVVVAVQPLKAGLPI 63 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L DG D ++ G + I + + L + G+ Sbjct: 64 AASSLRVQQ--AAARPDGAFVDPV------QIIGRVPSADIPEQAAVVESSL----SSGM 111 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--------------PTV 167 + L+ G+RA + + ++AVG ++P + VDV + Sbjct: 112 ADLVKPGERAVAIKVDENNAVGNHMRPGNFVDVFVNLKRDAAGGLPGTNSSGPEIPKTQA 171 Query: 168 TVVLSNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSI 223 ++LS IRV+A + + TA L + Q AL A++ L+L LRS Sbjct: 172 KLLLSKIRVLAFGDATTARDPSGGAAGGVRTAVLAVPTAQIDALTLAEASGNLTLALRSP 231 Query: 224 ADLNPSSSEDS 234 D + ++ + Sbjct: 232 RDEDVATQTVA 242 >gi|299069499|emb|CBJ40768.1| putative Flp pilus assembly protein precursor (CpaB) [Ralstonia solanacearum CMR15] Length = 310 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 47/252 (18%), Positives = 92/252 (36%), Gaps = 28/252 (11%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M L + A++ G++A + EN V+++ L G Sbjct: 1 MTSKYLQIFAAGLLLLAVILGVVAWKNAHRPPAPVAAQQNENGKTLYPVVVTVKPLEAGK 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 +T + + + P I+ + + ++ G VPI G P+ +L + Sbjct: 61 PITADQVGVESLP--------INPADGFSEVNKVVGREPIVPIGIGVPLIGSQL----SS 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176 GL+ + G+RA + + VG + P D+VDV +V ++ ++L ++RV Sbjct: 109 GLALQVEPGQRAVAITVDEVVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRV 168 Query: 177 IAIDHNIDSDERVL------------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +A ++ TA L + L +Q +L + LR+ + Sbjct: 169 LAFGPLAVNEGPQKQGDAGAVARRVDQAKTAVLAVPVESVSQLAISQQSGRLLMALRNPS 228 Query: 225 DLNPSSSEDSDV 236 D + D Sbjct: 229 DEAEPTVRPQDA 240 >gi|269105131|ref|ZP_06157825.1| flp pilus assembly protein RcpC/CpaB [Photobacterium damselae subsp. damselae CIP 102761] gi|268160581|gb|EEZ39080.1| flp pilus assembly protein RcpC/CpaB [Photobacterium damselae subsp. damselae CIP 102761] Length = 267 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 106/275 (38%), Gaps = 26/275 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ + + + G +A L +P E I E I V D+ G Sbjct: 1 MKSKLILAFAIIVILFGLYG-LATNLSNPTSPANHEPIKEE--PKIRVWKLNKDVHPGEF 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 + N+L PE D + + + + + G + ++ LV +G Sbjct: 58 IERNMLSVENIPESEANGLGFVDDVNLDWKAK---TVFKSHLSAGSLLTIDDLVQPDQDG 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-------------RKPT 166 + ++ + K + ++ SS +GG+I VD++ + L+ + Sbjct: 115 YIDFIIDENKIPFPIIVTPSSVIGGVIANGSLVDILALTGLNGTASNFGNNSGSSKNTVS 174 Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGS----TATLELTPMQAKALVAAQSVAKLSLVLRS 222 +T ++S ++V+ + H + R S T +ELT QA L AQ ++++ V +S Sbjct: 175 ITPIISAVKVLLVKHQLIDTNRQSDTSDEQVTLVVELTRKQAVVLTVAQRISEIE-VHKS 233 Query: 223 IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 N +D D+ + K I +A K Sbjct: 234 SGYYNTDDLS-ADAGDILKNFKAITEYRADTTTVK 267 >gi|227811503|ref|YP_002811514.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. CDC 684] gi|254687774|ref|ZP_05151630.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. CNEVA-9066] gi|254739264|ref|ZP_05196966.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Western North America USA6153] gi|254745060|ref|ZP_05202737.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Kruger B] gi|254756463|ref|ZP_05208492.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Vollum] gi|227008105|gb|ACP17847.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. CDC 684] Length = 286 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ V A VAGI EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDSETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|320322729|gb|EFW78822.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. glycinea str. B076] gi|320330486|gb|EFW86465.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. glycinea str. race 4] gi|330873796|gb|EGH07945.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. glycinea str. race 4] Length = 319 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 82/282 (29%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45 M M + V + AL+AG + + + P P Sbjct: 1 MSSRITMVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVED 60 Query: 46 ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + +L G + Sbjct: 61 ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSTWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + G L+ ++ +RA + + G + P D+VDV++ Sbjct: 113 TAGTWLSENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170 Query: 163 RKP--TVTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPM 202 + VV+ +RV+ + + D T T+ + Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N + S+ + Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272 >gi|300694112|ref|YP_003750085.1| flp pilus assembly protein precursor (cpab) [Ralstonia solanacearum PSI07] gi|299076149|emb|CBJ35462.1| putative Flp pilus assembly protein precursor (CpaB) [Ralstonia solanacearum PSI07] Length = 310 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 27/243 (11%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76 ++ G +A + EN V+++ L G +T + + + P Sbjct: 18 VILGAVAWKNAHRPPAPVAAQQNENGKTLYPVVVTVKPLEAGKPITADQVGVESLPIN-- 75 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136 DV + + G VPI G P+ +L + GL+ + G+RA + + Sbjct: 76 PADAFADVSK------VVGREPIVPIGVGVPLIGSQL----SSGLALQVVPGQRAVAITV 125 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDERVL--- 190 VG + P D+VDV +V ++ ++L ++RV+A ++ Sbjct: 126 DEVVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRVLAFGPLAVNEGPQKQPD 185 Query: 191 ---------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 TA LE+ L A +L L LR+ +D + D + Sbjct: 186 ANALTRRVDQAKTAVLEVPVESVNQLAIAHQSGRLLLALRNPSDDAEPTVRPQDAQALAV 245 Query: 242 EGK 244 + Sbjct: 246 ANR 248 >gi|319940439|ref|ZP_08014784.1| hypothetical protein HMPREF9464_00003 [Sutterella wadsworthensis 3_1_45B] gi|319806065|gb|EFW02814.1| hypothetical protein HMPREF9464_00003 [Sutterella wadsworthensis 3_1_45B] Length = 321 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 111/283 (39%), Gaps = 42/283 (14%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINV-----LISKGDLA 56 K + L+ + + V A A +A L++PH + + A V + + Sbjct: 4 KTSSLLLLGFAVVLAGCAAFVARGLLAPHAAERPAAAAQAKASEAQVPPVWAAAAAKPVE 63 Query: 57 VGMVVTPNILEWVAFPEENVFDGFID--DVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 G ++ ++WV + I A L G VR + +G+ I + ++ Sbjct: 64 PGEFLSGTAIKWVEMKADEAPASAISAKRPGDRTAAALLMGATVRRSVPQGELITQDDVL 123 Query: 115 DR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------- 166 G L+++L GKRA ++ S S+ G++ D VDV++ + Sbjct: 124 YPGNPGFLAAVLSPGKRAVSIPTSAVSSNSGLVSAGDWVDVILTLKRETAEAMADQQDKT 183 Query: 167 -------VTVVLSNIRVIAIDHNIDS--------------------DERVLVGSTATLEL 199 +L+N+RV+A++++ +S R + T TLE+ Sbjct: 184 SGMTKLAAQTILTNVRVLALNNSTESIAPQPETAPQKTDAKKTASTAARRVDYRTITLEV 243 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 TPM+A+AL A+ L + +R + + + + + + Sbjct: 244 TPMEAQALAVAKEAGDLQVSIRGLREPETKDAAGTSAVNEKTA 286 >gi|289625313|ref|ZP_06458267.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647838|ref|ZP_06479181.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi str. 2250] gi|330867147|gb|EGH01856.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871035|gb|EGH05744.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 319 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 82/282 (29%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45 M M + V + AL+AG + + + P P Sbjct: 1 MSSRITMVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVED 60 Query: 46 ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + +L G + Sbjct: 61 ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSSWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + G L+ ++ +RA + + G + P D+VDV++ Sbjct: 113 TAGTWLSENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170 Query: 163 RKP--TVTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPM 202 + VV+ +RV+ + + D T T+ + Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N + S+ + Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272 >gi|225871553|ref|YP_002752911.1| Flp pilus assembly protein CpaB [Bacillus cereus 03BB102] gi|225785587|gb|ACO25805.1| Flp pilus assembly protein CpaB [Bacillus cereus 03BB102] Length = 286 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 88/242 (36%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ + V A VAGI EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIVAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + + +++ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----VSKKDVVGTWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|228918954|ref|ZP_04082339.1| hypothetical protein bthur0012_60570 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228840756|gb|EEM86013.1| hypothetical protein bthur0012_60570 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 286 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 88/242 (36%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ + V A VAGI EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIVAVGLAAATVAGIYGYNHF----------AVENAVKPTKIIVAAKDIPS 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + + +++ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----VSKKDVVGKWTNDGQPISENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|66047617|ref|YP_237458.1| Flp pilus assembly CpaB [Pseudomonas syringae pv. syringae B728a] gi|63258324|gb|AAY39420.1| Flp pilus assembly CpaB [Pseudomonas syringae pv. syringae B728a] gi|330969408|gb|EGH69474.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 319 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 90/282 (31%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45 M + + V + AL+A + + + P + P Sbjct: 1 MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAAVIPPSEPVTTETAIQTPPTPPVED 60 Query: 46 ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T + L + G A+ ++ G + Sbjct: 61 ALRHNVVVLARDIPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + G L+ ++ +RA + + + G + P D+VDV++ Sbjct: 113 TAGSWLTESSF--DTGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 170 Query: 163 RKP--TVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202 P + VV+ +R++ + D + +++ + T T+ + Sbjct: 171 SNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPQA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N ++ + + Sbjct: 231 LVARLMLASQTGVLRLAVRSADEGNLQDYWANEAGGLDAAER 272 >gi|295690799|ref|YP_003594492.1| Flp pilus assembly protein Cpab [Caulobacter segnis ATCC 21756] gi|295432702|gb|ADG11874.1| Flp pilus assembly protein CpaB [Caulobacter segnis ATCC 21756] Length = 293 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 82/291 (28%), Positives = 132/291 (45%), Gaps = 40/291 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGII---AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 M RL+ ++++ V A+ ++ A+ + + V VL++K DLA+ Sbjct: 1 MSPVRLLIVLIAAVSAIGMAVVLQRALGVKADKPVAAAAPAAAPAKPMTQVLVAKRDLAI 60 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQP------------------------NAMQEL 93 G +T ++W A+P ++V FI + P + + L Sbjct: 61 GARLTQADIDWQAWPSDSVNAAFITNGAAPAEGETTSGAVALAKAAVTGQMIGGDPAKAL 120 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 DG +VR PIL G+PI K+V G GG LS +L GKRA + +S + GG I P D V Sbjct: 121 DGAIVRDPILAGEPITARKIVRGGEGGYLSVVLTPGKRAVAVPVSADTTAGGFILPGDRV 180 Query: 153 DVVMVRSLS------ERKPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTPMQA 204 DV+ R R VL N+RV+A+D D D + + ++ATLE+ +A Sbjct: 181 DVLSTRDAPLPGGVGGRVIIGETVLRNVRVLALDQKTVADKDAKSQIATSATLEVGAAEA 240 Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIV 255 +AL AA++ ++L LR+ D S + D ++I + G Sbjct: 241 EALAAAKAGGPVTLALRAYTDAGAPSGGFAGPSDPA----AVRINRGGQTS 287 >gi|228912543|ref|ZP_04076208.1| hypothetical protein bthur0013_66020 [Bacillus thuringiensis IBL 200] gi|228847113|gb|EEM92102.1| hypothetical protein bthur0013_66020 [Bacillus thuringiensis IBL 200] Length = 286 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/242 (18%), Positives = 86/242 (35%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ V A VAGI EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + +L P + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEEMLVERTLPGDAIPPNALR-----VNKKEVVGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + + SS+ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEDLPDSSILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|171317112|ref|ZP_02906315.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MEX-5] gi|171097746|gb|EDT42573.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MEX-5] Length = 308 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 90/264 (34%), Gaps = 32/264 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + A++ G+ A ++ V T A + V+++ L G + Sbjct: 3 NNLTKIIAGLLIAIAVLLGLYAW-MLGRSSPGPAPVSTTFAANPVPVVVATRALPAGQPI 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L+ P G D L G + I PI LV GL Sbjct: 62 AADALKLQ--PIAPAPTGAFGDPAM------LVGRVPAKEIAASSPIVAGALV----SGL 109 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---------PTVTVVLS 172 + + G+RA + + ++AVG ++P + VDV + ++LS Sbjct: 110 AEDVQPGERAIAVRVDETNAVGNRLRPGNFVDVFLNLKREGGGTMIDGEVSQTQARLLLS 169 Query: 173 NIRVIAIDHNIDSDE----------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 +RV++ + + A L + Q AL ++ +L+ LR+ Sbjct: 170 KVRVLSFGDATPDRDSGSNSNSNNGQPSNARIAVLAVPTAQVDALTLGEASGRLTFALRN 229 Query: 223 IADLNPSSSEDSDVWDVQEEGKEI 246 D ++ + D + + Sbjct: 230 PRDDELATQTVAMRTDNKLSPSAL 253 >gi|312621079|ref|YP_003993807.1| flp pilus assembly protein rcpc/cpab [Photobacterium damselae subsp. damselae] gi|311872800|emb|CBX86891.1| Flp pilus assembly protein RcpC/CpaB [Photobacterium damselae subsp. damselae] Length = 267 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 104/275 (37%), Gaps = 26/275 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ + + + G +A L +P E I I V D+ G Sbjct: 1 MKSKLILAFAIIVILFGLYG-LATNLSNPTSPANHEPI--KEEPKIRVWKLNKDVHPGEF 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 + N+L PE D + + + + + G + ++ LV +G Sbjct: 58 IERNMLSVENIPESEANGLGFVDDVNLDWKAK---TVFKSHLSAGSLLTIDDLVQPDQDG 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-------------VRSLSERKPT 166 + ++ + K + ++ SS +GG+I VD++ S+ + Sbjct: 115 YIDFIIDENKIPFPIIVTPSSVIGGVIANGSLVDILALTGLTGTASNFGNNSGSSKNTVS 174 Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGS----TATLELTPMQAKALVAAQSVAKLSLVLRS 222 +T ++S ++V+ + H + R S T +ELT QA L AQ ++++ V +S Sbjct: 175 ITPIISAVKVLLVKHQLIDTNRQSDTSDEQVTLVVELTRKQAVVLTVAQRISEIE-VHKS 233 Query: 223 IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 N +D D+ + K I +A K Sbjct: 234 SGYYNTDDLS-ADAGDILKNFKAITEYRADTTTVK 267 >gi|197337610|ref|YP_002157811.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11] gi|197314862|gb|ACH64311.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11] Length = 261 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 101/270 (37%), Gaps = 22/270 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ + + + + G+ + + +I I V K D+ Sbjct: 1 MKAKIIVVLAMITILFGLYGLAGSLSM----FAPQNIIKPKEENKIKVWQLKEDVNARDE 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119 + ++ V PE + + G + R + KG I +E + + Sbjct: 57 INRRLVSLVLLPESEANKLSFSED---VPINWNRGTIYRHDLKKGAYISMEDFITPEEDN 113 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---------VV 170 + ++ + + I +GG+I VDV+ + E + + + Sbjct: 114 YIEYVIAPNRVPFPLPIDSPDIIGGVIGNGSFVDVLALTKSDETRNSNRATKKTLSITPI 173 Query: 171 LSNIRVIAIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 ++++V+ + + + R+ LELT QA L+ A+ AK+ V +SI + + Sbjct: 174 FTSVKVLQVKRTVIPETRIEPAKEGIVLILELTRSQAVELIVAKEAAKIE-VHKSIGNYS 232 Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 + ++ DV ++ + + +A + K Sbjct: 233 IEDLK-ANAGDVLDDFRAVTEYRANKVTIK 261 >gi|261820213|ref|YP_003258319.1| Flp pilus assembly protein CpaB [Pectobacterium wasabiae WPP163] gi|261604226|gb|ACX86712.1| Flp pilus assembly protein CpaB [Pectobacterium wasabiae WPP163] Length = 312 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 44/272 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ + + V A + ++ +S V+ + P K VL++ DL G Sbjct: 1 MKVNSTYVLSGALVLAGIVALVVRSHLSSAPPPPPPVVVQAPEKT-AVLVAAKDLHPGDF 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + L W E + V ++ L G +R + +G + LV + G Sbjct: 60 IDSASLRWQV--TEEPVSRTFNFVRGKDSQSLLFGATLRETVTEGSALTNNVLVRQNEPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------- 166 L+++L KGKRA ++ S ++ G++ D VDV++ ++ Sbjct: 118 FLAAVLGKGKRAISVPTSAVASNAGLVAAGDRVDVILSMKRDDQPELPASRNQPVVMPLL 177 Query: 167 -VTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199 ++ ++RV+A++ + R T TLE+ Sbjct: 178 ASQTIVRDLRVLALNDRTGTPVYPRLDAMEDGATLDAAAKSRESAVRSRPATYQTVTLEV 237 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 TP QA+AL A+ + L L LRS + Sbjct: 238 TPQQAEALAVAKELGILHLALRSATPDDGIDP 269 >gi|266619843|ref|ZP_06112778.1| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479] gi|288868552|gb|EFD00851.1| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479] Length = 283 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 26/242 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK L ++ G+ +V ++ ++P + + ++ ++ G Sbjct: 1 MK-KFLKNRIILGLICIVVSLLICFGITPMFNDALK-------SKVTLVRVTKEIRTGEQ 52 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T ++ V N+ I + +E+ G + KGD I KL D Sbjct: 53 ITDKMVTSVEAVGYNLPSNVIYKI------EEVVGKYANADLYKGDYILKSKLSDTPMLR 106 Query: 121 LSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + L L RA ++ I +S + G ++ D V ++ S+R+ V L + +I Sbjct: 107 NAYLNKLNGENRAISVSIKSFASGLSGKLEAGDIVSLIAADVGSQRETLVYPELQYVEII 166 Query: 178 AID---------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 A + E + ST T+ +P Q++ L + KL L + Sbjct: 167 ATTGSSGSDQNVQERGNGEEEELASTITVLASPEQSRLLAELEQTGKLHAALVFRGESTQ 226 Query: 229 SS 230 + Sbjct: 227 AQ 228 >gi|284802136|ref|YP_003414001.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5578] gi|284995278|ref|YP_003417046.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5923] gi|284057698|gb|ADB68639.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5578] gi|284060745|gb|ADB71684.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5923] Length = 284 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 85/225 (37%), Gaps = 18/225 (8%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G+I + L + + ++ ++ D+ +G +T ++++ V N+ Sbjct: 9 VIGVICIVLSLIICFAVTPLFNKGMSQKTEIVRVTKDIKIGDEITKDMVQIVEVGSYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 + + + + + G ++ GD I K+ + L L K+A ++ Sbjct: 69 EDVVKN------TETVLGKFASADMVPGDYIISSKIAAEPAAENAYLYNLTGEKQAMSVS 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-------- 186 + ++ + G + D V ++ + + L + VIA+ D Sbjct: 123 VKSFATGLSGKLVSGDIVSIIAPDYKKQGTTVIPPELQYVEVIAVTAGSGYDANTGEQED 182 Query: 187 -ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 E + ST TL +TP Q+K L ++ L + L ++ Sbjct: 183 SEEKELPSTVTLLVTPEQSKILAMLEADGNLHISLVYRGSKENAA 227 >gi|187478777|ref|YP_786801.1| pilus assembly protein [Bordetella avium 197N] gi|115423363|emb|CAJ49897.1| putative pilus assembly protein [Bordetella avium 197N] Length = 270 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 88/232 (37%), Gaps = 19/232 (8%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 + ++ N + L++ DL G ++T + + P+ P Sbjct: 46 QAKERDLQHRNQVVMVTRLVAWADLEAGQLLTEDDIASREIPKNWAP----HQSLSPEQT 101 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 L G ++VP++ G PI + G ++ L GKRA T+ + + + ++ D Sbjct: 102 GLLIGSRLKVPVMAGQPILQADIEFVSPGT-AARLGVGKRALTLPVRELADMPPDMREGD 160 Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210 +D+ + + +++ +L N +V+A + LE ++AA Sbjct: 161 RLDIYVSLTHHDKR-LTLPLLQNGKVLA--------APGPESAQVVLEADAQDVTRVIAA 211 Query: 211 QSVAKLSLVLRSIADL-----NPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 + L+L LRS D + +D+ + EEG + G N Sbjct: 212 RQAGSLTLALRSPEDAAYPAHDEPGGALADILGLAEEGDAGVPVLYGDESND 263 >gi|329943872|ref|ZP_08292143.1| Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 170 str. F0386] gi|328531578|gb|EGF58414.1| Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 170 str. F0386] Length = 362 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 86/257 (33%), Gaps = 32/257 (12%) Query: 1 MKLTR---LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 M + ++ I + V ALV + + V+ + V+ D+ Sbjct: 114 MNPRQRKGIILIFFTIVGALVTFGLVLSYVNS--------VASQVGPMTTVVTLTRDVES 165 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 +T +E P+ +G + + +E G++ KGD ++ L Sbjct: 166 LTSLTEADVEVKEVPKRWAPNGALH------SFKETSGLVTAGTYHKGDMLQSGMLESPP 219 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRV 176 L G R + + + V G I + VD++ + + VV+ N + Sbjct: 220 G------LQSGYREVAIIVDAETGVAGKISSGETVDIIATVEDPNTKAQQANVVVENAVI 273 Query: 177 IAIDHNIDSDERVLVGS-------TATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNP 228 + + D E+ G+ T L+ A + A+S A K+ L LR D + Sbjct: 274 LDVGVTTDIKEKDESGNFTDEKGVPVTFALSTQDALKVAYAESFAVKVRLALRGEGDDSA 333 Query: 229 SSSEDSDVWDVQEEGKE 245 + + Sbjct: 334 LGPDSTQYGGGSAPAPA 350 >gi|240145308|ref|ZP_04743909.1| putative Flp pilus assembly protein CpaB [Roseburia intestinalis L1-82] gi|257202665|gb|EEV00950.1| putative Flp pilus assembly protein CpaB [Roseburia intestinalis L1-82] Length = 231 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 16/223 (7%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G++ + + ++ ++ ++ D+ G + +L+ V N+ Sbjct: 9 VLGVLCIAVSLLICFAVTPLVNAGLSQKTTIVRFVKDVKAGEEIKKGMLQEVEVGGYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 + + ++ E +G + + GD I EK+ D L L K+A ++ Sbjct: 69 ENVLR------SITEAEGKYLTADVYAGDYIVAEKVADEPAAENKYLYNLNGEKQAISIT 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------DHNIDSDE 187 IS + + G +K D V V+ L + + L + VIA+ + + +E Sbjct: 123 ISSFAEGLSGKLKSGDIVSVIAPDYLGSGETVIPAELKYVEVIAVTAKSGYDANTQEQEE 182 Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + ST T+ + P Q++ L ++ ++ L L D ++ Sbjct: 183 EKELPSTVTVLVRPEQSRLLARLEAEGEIHLSLVYRGDSQKAA 225 >gi|107022593|ref|YP_620920.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054] gi|116689542|ref|YP_835165.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424] gi|170732846|ref|YP_001764793.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3] gi|105892782|gb|ABF75947.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054] gi|116647631|gb|ABK08272.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424] gi|169816088|gb|ACA90671.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3] Length = 301 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 86/250 (34%), Gaps = 30/250 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + A++ G+ A ++ V + + V+++ L G + Sbjct: 3 NNLTKIIAGLLIAIAILLGVYAW-MLGRKPADVAPVAATVATQSVPVVVTTRPLQAGQPI 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 L+ G D +L G + I + L + GL Sbjct: 62 PAEALKVQQ--STAAPQGAFADPL------QLVGRIPAADIPAQAAVVASAL----SSGL 109 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------------PTVT 168 + L G+RA + + ++AVG ++P ++VDV + Sbjct: 110 AEQLAPGERAVAIKVDETNAVGNRVRPGNYVDVFLNLKRDGTGVAIGGTSTAEIVNTQAR 169 Query: 169 VVLSNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +++S +RV++ + TA L + Q AL A+ +L L LRS Sbjct: 170 LLMSKVRVLSFGDATTERDSSNGSVVGTRTAVLAVPTAQVDALTLAEQSGRLVLALRSPR 229 Query: 225 DLNPSSSEDS 234 D + ++ + Sbjct: 230 DEDVATQTVA 239 >gi|228925187|ref|ZP_04088297.1| hypothetical protein bthur0011_60590 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834526|gb|EEM80055.1| hypothetical protein bthur0011_60590 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 286 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ V A VAGI EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|206559893|ref|YP_002230657.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|198035934|emb|CAR51826.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 301 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 86/250 (34%), Gaps = 30/250 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + A++ G+ A ++ V + + V+++ L G + Sbjct: 3 NNLTKIIAGLLIAIAILLGVYAW-MLGRKPGDVAPVAATVATQSVPVVVTTRPLQAGQPI 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L+ G D +L G I + L + GL Sbjct: 62 PADALKVQQ--STAAPQGAFADPL------QLVGRTPAADIPAQAAVVASAL----SSGL 109 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------------PTVT 168 + + G+RA + + ++AVG ++P ++VDV + Sbjct: 110 AEQIAPGERAVAIKVDETNAVGNRVRPGNYVDVFLNLKRDGTGVAIGGTSTAEIVNTQAR 169 Query: 169 VVLSNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +++S +RV++ + TA L + Q AL A+ +L L LR+ Sbjct: 170 LLMSKVRVLSFGDATTERDSSNGSVVGTRTAVLAVPTAQVDALTLAEQSGRLVLALRNPR 229 Query: 225 DLNPSSSEDS 234 D + ++ + Sbjct: 230 DDDVATQTVA 239 >gi|47568973|ref|ZP_00239664.1| conserved hypothetical protein protein [Bacillus cereus G9241] gi|301068118|ref|YP_003786889.1| hypothetical protein BACI_pCIXO100760 [Bacillus anthracis CI] gi|47554357|gb|EAL12717.1| conserved hypothetical protein protein [Bacillus cereus G9241] gi|300379208|gb|ADK08111.1| conserved hypothetical protein [Bacillus cereus biovar anthracis str. CI] Length = 286 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ V A VAGI EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|313902402|ref|ZP_07835805.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM 13965] gi|313467333|gb|EFR62844.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM 13965] Length = 236 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 104/244 (42%), Gaps = 18/244 (7%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + +++ + L I+ V + V+++ + + Sbjct: 3 RGRMVRYLLLPVLAGLAVTILVAFYVR------VPAGEAGKEPRVPVVVATRPVPAQTPL 56 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 ++L P + V G + + +E G + +VP+ +G+ + KL G Sbjct: 57 QADMLAVRQVPADVVGRGAVGRI------EEAVGKVTKVPLAEGEFVLTSKLARGDGSDG 110 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSNIRVI 177 L+ LP+G RA T+ AVGG ++P D VDV++ + +P +++ N+ V+ Sbjct: 111 LAYRLPEGTRALTIAADPVLAVGGFVQPGDRVDVLIGLPGGKPGVEQPEARILVENVLVL 170 Query: 178 AIDHNIDSDERVLVG--STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+ + ++ + TL + P A A+V A+ +L L+LR D P+ + + Sbjct: 171 AVQQDTAAEGEPAGDGLTHLTLAVAPAHAAAIVLAEQEGRLRLLLRPAGDGRPAGAVTAR 230 Query: 236 VWDV 239 + D+ Sbjct: 231 LADL 234 >gi|228950016|ref|ZP_04112204.1| hypothetical protein bthur0007_60880 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809663|gb|EEM56096.1| hypothetical protein bthur0007_60880 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 286 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ V A VAGI EN K ++++ D+ Sbjct: 1 MKSSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + + +++ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----VSKRDVVGKWTNDGHPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVIFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|298488960|ref|ZP_07006983.1| Flp pilus assembly protein RcpC/CpaB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156458|gb|EFH97555.1| Flp pilus assembly protein RcpC/CpaB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 319 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 81/282 (28%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45 M + V + AL+AG + + + P P Sbjct: 1 MSSRITTVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVED 60 Query: 46 ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + +L G + Sbjct: 61 ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSTWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + G L+ ++ +RA + + G + P D+VDV++ Sbjct: 113 TAGTWLSENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170 Query: 163 RKP--TVTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPM 202 + VV+ +RV+ + + D T T+ + Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N + S+ + Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWPSEAGSRDAAER 272 >gi|167747677|ref|ZP_02419804.1| hypothetical protein ANACAC_02398 [Anaerostipes caccae DSM 14662] gi|239625012|ref|ZP_04668043.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|167653039|gb|EDR97168.1| hypothetical protein ANACAC_02398 [Anaerostipes caccae DSM 14662] gi|239521398|gb|EEQ61264.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 263 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 83/215 (38%), Gaps = 17/215 (7%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G+I + + + + +K + ++ D+ +G +T +++ V N+ Sbjct: 9 VLGVICIVVSLLICFGVTPLFNKEVSKKVEIVRVVKDIKIGDKITGDMVRTVEVGSLNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 + + + + G + GD I K+ D + L L K+A ++ Sbjct: 69 SEVMKN------KENVIGKYASADMAPGDYIINSKVADEPAAENAYLYNLSGEKQAISVS 122 Query: 136 I-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-------- 186 + S ++ + G +K D V V+ + + + L + VIA+ D Sbjct: 123 VKSFATGLSGKLKSGDIVSVIAPDYQKQGETVIPPELKYVEVIAVTAGSGYDANTGEEDP 182 Query: 187 ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 E + ST TL TP Q++ L + L + L Sbjct: 183 EEKELPSTVTLLATPEQSRILAMMEKDGNLHISLV 217 >gi|167562916|ref|ZP_02355832.1| Flp pilus assembly protein CpaB family [Burkholderia oklahomensis EO147] Length = 226 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 26/231 (11%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + A++ GI A L T + V+++ L G + + L Sbjct: 8 IIAGLLIGIAILLGIYAWLLGRKPAPAAPSAATAVATAVVPVVVATRALPTGQPIPADAL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P G + + G + I+ P+ +L+ GL+ + Sbjct: 68 KVQQMPASVA--GAFSNPAL------VTGRIPASDIVAQAPVLESELM----SGLADQIA 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVVLSNIRVI 177 G+RA + + ++AVG ++P + VDV M + ++LS +RV+ Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFMNMKRESSFGTTGSEISQSQARLLLSRVRVL 175 Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 + + TA L + Q AL A++ +L L LRS Sbjct: 176 SFGDATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSP 226 >gi|257483348|ref|ZP_05637389.1| CpaB family Flp pilus assembly protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 81/282 (28%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45 M + V + AL+AG + + + P P Sbjct: 1 MSSRITTVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVED 60 Query: 46 ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + +L G + Sbjct: 61 ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSTWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + G L+ ++ +RA + + G + P D+VDV++ Sbjct: 113 TAGTWLSENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170 Query: 163 RKP--TVTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPM 202 + VV+ +RV+ + + D T T+ + Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N + S+ + Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272 >gi|167769285|ref|ZP_02441338.1| hypothetical protein ANACOL_00608 [Anaerotruncus colihominis DSM 17241] gi|167668253|gb|EDS12383.1| hypothetical protein ANACOL_00608 [Anaerotruncus colihominis DSM 17241] Length = 281 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 84/226 (37%), Gaps = 19/226 (8%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G+I + L + ++ ++ ++ + G +T ++++ V N+ Sbjct: 9 VVGVICILLSLLICFGLTPLFNQSVSQKAEIVRVVQPIRAGDEITESMVQIVEVGGYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 + + + G + GD I KL D + L L ++A ++ Sbjct: 69 EDVLRQ------KESAVGKYATADLAVGDYIIPSKLSDAPAAENAYLYSLDGSQQAISVS 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184 I + + G ++ D V V+ + + V L + +I++ +D Sbjct: 123 IKSFAEGLSGKLQSGDIVSVIAPDYKQQGQTVVPAELQYVEIISVTASSGYDANTGEPVD 182 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 ++ + T TL ++P QAK L ++ + L L D + Sbjct: 183 EEDDKELPDTVTLLVSPEQAKVLAELEAEGTIHLALVYRGDRENAD 228 >gi|311105391|ref|YP_003978244.1| Flp pilus assembly protein CpaB 1 [Achromobacter xylosoxidans A8] gi|310760080|gb|ADP15529.1| Flp pilus assembly protein CpaB 1 [Achromobacter xylosoxidans A8] Length = 284 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 89/234 (38%), Gaps = 12/234 (5%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 +L R ++ + LV+ + + + E ++ L++ DL G + Sbjct: 11 RLRRTGVYAIALIAGLVSAWAVR---EHVQQRVQALEAEARTPMVSRLVAAYDLPAGTQL 67 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120 L PE I P + L G + + G+P+ L Sbjct: 68 EELHLAVREIPEPWASRASI----DPLDLSGLLGATLLADVANGEPLLRGHLTFTAPVPA 123 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L+S L G+RA T+ + + +++ D +D+ + + +++ +L +RV+ + Sbjct: 124 LASRLRSGQRALTVAATDLGGLAEVLRVGDAIDIYVSFAHRQQE-LTVPLLQGMRVLMVG 182 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 D + + G TL TP +A VAA+ L+ +LR D S Sbjct: 183 GEADGENK---GGNITLAATPDEAMRFVAARQSGVLTAMLRHRDDAAVVSGAAQ 233 >gi|209809169|ref|YP_002264707.1| putative Flp pilus assembly protein [Aliivibrio salmonicida LFI1238] gi|208010731|emb|CAQ81122.1| putative Flp pilus assembly protein [Aliivibrio salmonicida LFI1238] Length = 260 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 107/270 (39%), Gaps = 23/270 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ ++ + V + + G+ + T + I I V K ++ + Sbjct: 1 MKVKLIIVLAVMTILFGLYGLG-----ESLSLFTPQKIQSAKEVKIKVWRLKKEVNMSEE 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119 + ++L PE+ + + + G + + + KG I + L+ +G Sbjct: 56 INRHMLALELMPEQKANALSFSEDVTLDL---IPGTVFKSELKKGTYISMSDLITPEEDG 112 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---------VV 170 + ++ + + + SS GG+I+ VD++ + S + + Sbjct: 113 YIDYVIAPERIPFPITVDPSSITGGVIRSGTIVDILALTSPQNINNSTRNVKKSVSITPI 172 Query: 171 LSNIRVIAIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 + ++V+ + H++ R V + LELT QA L+ A+ +A + V +S + Sbjct: 173 FTGVKVLQVKHSVIKGNRNDVETEVISLILELTREQATKLIVAKKIADIE-VYKSTGKYD 231 Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 S + +D D+ ++ I +A +V K Sbjct: 232 SSDLQ-ADAGDILKDFNAITEYRANEVVIK 260 >gi|89897311|ref|YP_520798.1| hypothetical protein DSY4565 [Desulfitobacterium hafniense Y51] gi|89336759|dbj|BAE86354.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 277 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 22/234 (9%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G++ + L + + A+ V+ D+ G V+T ++++ V N+ Sbjct: 9 VLGVLCIVLSLFICFVLTPLFNQGVARKATVVRVVKDIKSGGVITKDMVQTVEVGSYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 + I + + G +L GD I EK+ D + L L KRA ++ Sbjct: 69 ENVIRQS------ETVIGKYAEADLLPGDSILTEKVSDTPASENAYLYSLNGDKRAISVS 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID-----------HNI 183 I + + G + D V V+ + + L+ + VI + Sbjct: 123 IKSFAQGLSGKLISGDIVSVIAPDYKKQGATVIPPELTYVEVIGVTASTGYDTGAGEQIK 182 Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNPSSSEDSD 235 D E + +T TL + P Q K L ++ KL L L R + +E D Sbjct: 183 DGGEERELPATVTLLVAPEQGKILAELEAEGKLHLSLVHRGAQETAAQFTELQD 236 >gi|78066130|ref|YP_368899.1| Flp pilus assembly CpaB [Burkholderia sp. 383] gi|77966875|gb|ABB08255.1| Flp pilus assembly CpaB [Burkholderia sp. 383] Length = 300 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 87/250 (34%), Gaps = 30/250 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + A++ G+ A ++ V + + V+++ L G + Sbjct: 3 NNLTKIIAGLLIAIAVLLGVYAW-MLGRKPADVAPVAATVATQSVPVVVTTRALPAGQPI 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L+ G D +L G + I I L + GL Sbjct: 62 PADALKVQQ--STAAPQGAFADPL------QLVGRVPAADIPAQAAIVASAL----SSGL 109 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------------PTVT 168 + + G+RA + + ++AVG ++P ++VDV + Sbjct: 110 AEQIAPGERAVAIKVDETNAVGNRVRPGNYVDVFLNLKRDGTGVAIGGTSTAEIVNTQAR 169 Query: 169 VVLSNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +++S +RV++ + TA L + Q AL A+ +L L LR+ Sbjct: 170 LLMSKVRVLSFGDATTERDSSNGSVVGMRTAVLAVPTAQVDALTLAEQSGRLVLALRNPR 229 Query: 225 DLNPSSSEDS 234 D + ++ + Sbjct: 230 DDDVAAQTVA 239 >gi|225375669|ref|ZP_03752890.1| hypothetical protein ROSEINA2194_01294 [Roseburia inulinivorans DSM 16841] gi|225212526|gb|EEG94880.1| hypothetical protein ROSEINA2194_01294 [Roseburia inulinivorans DSM 16841] Length = 282 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 16/223 (7%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G++ + + ++ ++ ++ D+ G + +L+ V N+ Sbjct: 9 VLGVLCIAVSLLICFAVTPLVNAGLSQKTTIVRFVKDVKAGEEIKKGMLQEVEVGGYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 + + ++ E +G + + GD I EK+ D L L K+A ++ Sbjct: 69 ENVLR------SITEAEGKYLTADVYAGDYIVAEKVADEPAAENKYLYNLNGEKQAISIT 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------DHNIDSDE 187 IS + + G +K D V V+ L + + L + VIA+ + + +E Sbjct: 123 ISSFAEGLSGKLKSGDIVSVIAPDYLGSGETVIPAELKYVEVIAVTAKSGYDANTQEQEE 182 Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + ST T+ + P Q++ L ++ ++ L L D ++ Sbjct: 183 EKELPSTVTVLVRPEQSRLLARLEAEGEIHLSLVYRGDSQKAA 225 >gi|228918617|ref|ZP_04082054.1| hypothetical protein bthur0012_57520 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841025|gb|EEM86230.1| hypothetical protein bthur0012_57520 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 286 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ V A VAGI EN K ++++ D+ Sbjct: 1 MKSSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + + +++ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----VSKRDVVGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|326943576|gb|AEA19469.1| hypothetical protein CT43_P281127 [Bacillus thuringiensis serovar chinensis CT-43] Length = 286 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ V A VAGI EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNVLR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|229182299|ref|ZP_04309574.1| hypothetical protein bcere0005_56080 [Bacillus cereus 172560W] gi|228601155|gb|EEK58701.1| hypothetical protein bcere0005_56080 [Bacillus cereus 172560W] Length = 286 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ V VAGI EN K V+++ D+ Sbjct: 1 MKPSKFQKKQITAVGLAAITVAGIYGYNHF----------AVENAVKPTKVVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + +L P + + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEEMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKDGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|167772246|ref|ZP_02444299.1| hypothetical protein ANACOL_03621 [Anaerotruncus colihominis DSM 17241] gi|167665349|gb|EDS09479.1| hypothetical protein ANACOL_03621 [Anaerotruncus colihominis DSM 17241] Length = 281 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 83/226 (36%), Gaps = 19/226 (8%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G+I + L + ++ ++ ++ + G +T ++++ V N+ Sbjct: 9 VVGVICIMLSLLICFGLTPLFNQSLSQKAEIVRVVQPIRAGDEITESMVQTVEVGGYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 + + + G + GD I KL D + L L ++A ++ Sbjct: 69 EDVLRQ------KESAVGKYATADLAVGDYIIPSKLSDAPAAENAYLYSLDGSQQAISVS 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184 I + + G ++ D V V+ + + V L + +I++ D Sbjct: 123 IKSFAEGLSGKLQSGDIVSVIAPDYKQQGQTVVPAELQYVEIISVTASSGYDANTGAPAD 182 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 +E + T TL ++P QAK L ++ + L L D + Sbjct: 183 EEEDKELPDTVTLLVSPEQAKVLAELEAEGTIHLALVYRGDRKNAE 228 >gi|163801678|ref|ZP_02195576.1| hypothetical protein 1103602000597_AND4_09497 [Vibrio sp. AND4] gi|159174595|gb|EDP59397.1| hypothetical protein AND4_09497 [Vibrio sp. AND4] Length = 274 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 97/269 (36%), Gaps = 27/269 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + + + G+I + P + T V + K+++V ++ G Sbjct: 1 MRSRLVLLVAIVALIVGALGVIDLFKSEPQAITTAPVTSNKKEKYVSVWMTTEVYEKGNA 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 + + P I + Q + L+ + +G+ + E V+ G Sbjct: 61 IKAQGVVKQQLPLSKALKLGIREDTQISFSPS---ALLNRGLAQGEVVLPEYQVNPDQPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167 + L+ G + +S + + G I+P +D++ V S + Sbjct: 118 YIDLLIKDGMTLYPLKVSTQNLIKGYIRPGTFIDILTVSSPNANLATGAEKPKRFKGVKA 177 Query: 168 TVVLSNIRVIAIDHNIDSDE--------RVLVGSTATLELTPMQAKALVAAQSVAKLSL- 218 ++ L +++V+ I ++ + +T +E+ P L AQ L + Sbjct: 178 SMFLKHVKVLNIGNDEKDKNPVSARSPSKEESLTTVIIEVKPDDLARLALAQQ--TLHIE 235 Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 V RS P +E ++ D E++ Sbjct: 236 VYRSQTYNQPEYAEVRNIIDNYTGIDELR 264 >gi|153956473|ref|YP_001397238.1| hypothetical protein CKL_3890 [Clostridium kluyveri DSM 555] gi|219856777|ref|YP_002473899.1| hypothetical protein CKR_3434 [Clostridium kluyveri NBRC 12016] gi|146349331|gb|EDK35867.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219570501|dbj|BAH08485.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 276 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 84/232 (36%), Gaps = 25/232 (10%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G++ + L + ++ ++ ++ + +G +T ++++ V N+ Sbjct: 9 VIGVVCIVLSLLICFAVTPLFNQSISQKTEIVRVTKPIKIGEAITKDMVQTVEVGGYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 + + + G ++ GD I K+ D + L L K+A ++ Sbjct: 69 EDVVRHTD------TVIGKFASADLVPGDYIIASKIADTPAAENAYLYNLTGKKQAISVS 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID-------------- 180 + ++ + G + D V +V + + L + VIA+ Sbjct: 123 VKSFAAGLSGKLISGDIVSIVAPDYKKQGVTVIPPELQYVEVIAVTADSGYDADQRNNEP 182 Query: 181 --HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + D + +T TL +TP Q+K L ++ L + L ++ Sbjct: 183 NPSSKQEDTEKELPATITLLVTPEQSKILAELEADGTLHVSLVYRGSKENAA 234 >gi|283797119|ref|ZP_06346272.1| Flp pilus assembly protein CpaB [Clostridium sp. M62/1] gi|291075536|gb|EFE12900.1| Flp pilus assembly protein CpaB [Clostridium sp. M62/1] Length = 280 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 85/227 (37%), Gaps = 19/227 (8%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76 V G+I + L + + + ++ ++ G +T ++++ V N+ Sbjct: 8 AVIGVICIVLSLIICFAVTPLFNKAISDKTEIVRVVKEIRTGEEITADMVKTVEVGAYNL 67 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATM 134 + + + + + G ++ GD I K+ + + L L K+A ++ Sbjct: 68 PEDVVR------STETVVGKFASADMVPGDYIIASKIAEEPAAENAYLYSLTGEKQAISV 121 Query: 135 DISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNI 183 + ++ + G ++ D V V+ + + L + VIA+ + Sbjct: 122 SVKSFANGLSGKLQSGDIVSVIAPDYKKQGLTVIPPELKYVEVIAVTANSGADANTGEHS 181 Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + + + T TL +TP Q+ L ++ + L L + ++ Sbjct: 182 EDEGDKELPDTVTLLVTPEQSMILAELEADGDIHLSLVYRGEQKNAA 228 >gi|229194284|ref|ZP_04321123.1| hypothetical protein bcere0002_58680 [Bacillus cereus ATCC 10876] gi|228589183|gb|EEK47163.1| hypothetical protein bcere0002_58680 [Bacillus cereus ATCC 10876] Length = 286 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ V VAGI EN K V+++ D+ Sbjct: 1 MKPSKFQKKQITAVGLAAITVAGIYGYNHF----------AVENAVKPTKVVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + +L P + + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEEMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKDGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQGVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|302387441|ref|YP_003823263.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1] gi|302198069|gb|ADL05640.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1] Length = 277 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 91/252 (36%), Gaps = 28/252 (11%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G+I + L + ++ + ++ + +G +T ++++ V N+ Sbjct: 9 VIGVICIVLSLLICFAITPLFNQSITQKTEIVRVTKPIKIGETITKDMVQTVEVGGYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 + + + G + GD I K+ D + L L K+A ++ Sbjct: 69 EDVVRHTD------TVIGKFASADLAPGDYIIASKIADAPAAENAYLYNLTGEKQAISVS 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-------- 186 + ++ + G + D V +V + + L + VIA+ + D Sbjct: 123 VKSFAAGLSGKLISGDIVSIVAPDYKKQGVTVIPPELQYVEVIAVTADSGYDANQQNGKS 182 Query: 187 ---------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNPSSSEDSD 235 + + +T TL +TP Q+K L ++ L + L R + +E D Sbjct: 183 NPSSEQADADEKELPATVTLLVTPEQSKILAELEANGTLHVSLVYRGSKENAAKFTEAQD 242 Query: 236 VWDVQEEGKEIQ 247 + +E++ Sbjct: 243 SVLSKLYPEEME 254 >gi|331012567|gb|EGH92623.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 82/282 (29%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45 M + V + AL+AG + + + P P Sbjct: 1 MSSRITTVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVED 60 Query: 46 ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + +L G + Sbjct: 61 ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSTWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + G L+ ++ +RA + + G + P D+VDV++ Sbjct: 113 TAGTWLSENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170 Query: 163 RKP--TVTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPM 202 + VV+ +RV+ + + D T T+ ++ Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVSEA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N + S+ + Sbjct: 231 VLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272 >gi|149927034|ref|ZP_01915292.1| Flp pilus assembly CpaB [Limnobacter sp. MED105] gi|149824255|gb|EDM83475.1| Flp pilus assembly CpaB [Limnobacter sp. MED105] Length = 321 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 84/228 (36%), Gaps = 27/228 (11%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 + M +S +V+ + + V++S ++ G VTP +L+ F G Sbjct: 19 FMVMAFLSGQNVKKGGEAIKTELERFPVVVSTVEIQFGKPVTPEMLKVEKF--AIAPSGA 76 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 D+ ++ G I KG P+ + +G +++ + +G RA + + ++ Sbjct: 77 FTDI------GDVIGKKPLFNIGKGLPVTNQYF---ESGAVAAEVREGYRAFALRLDENN 127 Query: 141 AVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVG----- 192 IK D+VDV S + +++ +RV+++ + + Sbjct: 128 VATAKIKAGDYVDVFSIFKSNSRDIEETISRLIMPKLRVLSVGSQLVNAPETTNAANDKD 187 Query: 193 --------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 +E+ L AQ+ +L +VLRS + Sbjct: 188 VNNRPVRLKAMMVEVPTGDINTLAIAQTQGELFVVLRSPDEEELPDMS 235 >gi|311107632|ref|YP_003980485.1| Flp pilus assembly protein CpaB 2 [Achromobacter xylosoxidans A8] gi|310762321|gb|ADP17770.1| Flp pilus assembly protein CpaB 2 [Achromobacter xylosoxidans A8] Length = 319 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 88/251 (35%), Gaps = 32/251 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA-------KFINVLISKG 53 M + + V LV +A RL S V A K V++++ Sbjct: 1 MSSLSKIVAGMLLVAGLVLAFVAWRLASAPASPPPGVAPAPVAAAPAEPLKLHPVVVARQ 60 Query: 54 DLAVGMVV-TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK 112 + G + + ++L + + G D+ L+G + +V I GDPI Sbjct: 61 PIPAGSRIDSASMLTVAQW--QVALSGGFADIAP------LEGAVAKVDIAAGDPIVPSL 112 Query: 113 LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVV 170 L GL+ L G+RA + + G I P D VDV + S ++ Sbjct: 113 LTQ----GLARQLKPGERAVAIAVDEVIGGGNRIVPGDMVDVFFMIEKSAEVAVGQARLL 168 Query: 171 LSNIRVIAID----------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 S +RV+A + TA L + + L+ A +L L L Sbjct: 169 QSQVRVLAYGRASVEGPDEKSALQQGGPGQPARTAVLAVPVDRVNELMLAGRAGRLQLAL 228 Query: 221 RSIADLNPSSS 231 R + D + + Sbjct: 229 RPVGDDSMPDA 239 >gi|153833237|ref|ZP_01985904.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01] gi|148870508|gb|EDL69423.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01] Length = 274 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 99/268 (36%), Gaps = 25/268 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + + + G+I + P + T V+ ++++V ++ G Sbjct: 1 MRSRLVLLVAIVALIVGALGVIDLFKSDPQPIATAAVVENTNEEYVSVWMTTEAYEKGHA 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 ++ + P + + Q + + L+ + GD + E V G Sbjct: 61 ISAQGVVKQQLPLNEALALGVREDAQISFSPSI---LLNRSLDLGDVVLPEYQVSPGQPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167 + L+ +G +++S + + I+P +D++ V S ++ Sbjct: 118 YIDLLVTEGMTLYPLEVSDQNLINDYIRPGSFIDILTVSSPNDNLAQNIDKPKRFKGVKA 177 Query: 168 TVVLSNIRVIAIDHNIDSD--------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 ++ L +++V+ I + D + +T +E+ P L AQ + + Sbjct: 178 SMFLKHVKVLNIGDDAKGDSSVTARSPSKENGLTTVVIEVKPDDLAKLALAQRTMHIEI- 236 Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 RS P +E +V D +E++ Sbjct: 237 YRSQTYSKPEYAEVRNVIDNYTGIEELR 264 >gi|187921505|ref|YP_001890537.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] gi|187719943|gb|ACD21166.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] Length = 366 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 99/286 (34%), Gaps = 42/286 (14%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 ++ + V A + ++ L +++ + V++ D+ V ++ + Sbjct: 16 ILLFLAVLVAAGLTFLLYKYLSDREKKLKDDMSAHRVRAGVVVVVPARDVPVDTPLSSSD 75 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 + V+D I + + + P+ +G P+R + S +L Sbjct: 76 FVAREIDGDLVYDDMIR----ADNFDKYRMSHLVKPVRRGLPLRAADIDALHGRDFSDVL 131 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------LSERKPTVTVVLSNIRVIAI 179 G RA T+DI ++ M++P + VDV + ++ K ++L+N ++A Sbjct: 132 RSGTRAVTVDIDTVNSTALMLRPGNRVDVYWIGKVYHQDNSNDDKKVAQLMLANTLILAT 191 Query: 180 DH--------------------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + S + + +T TLE+ A + AQ + L L+ Sbjct: 192 GQDMRPRDAGEAMQEDPANANSSAMSRQPGVGYTTVTLEVPVADAGRIALAQKIGGLRLI 251 Query: 220 LRSIADLNP------------SSSEDSDVWDVQEEGKEIQIIKAGV 253 LR+ D + K ++II G Sbjct: 252 LRNSDDKGTNGPSLVQENDVFVDPGRGRLSGSGPAPKTVEIIAGGS 297 >gi|323525745|ref|YP_004227898.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] gi|323382747|gb|ADX54838.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] Length = 320 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 74/218 (33%), Gaps = 24/218 (11%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + V+++ L G + + L P +G D Sbjct: 30 PAPAPVAPVRQTVFPVVVATRVLPAGKPIAADALRVQPLPIN--PNGAFADPSL------ 81 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 + G + I P+ E+L + GL+ + G+RA + + S+AVG ++P + V Sbjct: 82 VAGRVPAADIGAEAPVLEEQL----SSGLAERIQPGERAVAVRVEESNAVGNRLRPGNFV 137 Query: 153 DVVMVRSLSER--------KPTVTVVLSNIRVIAIDHNI----DSDERVLVGSTATLELT 200 DV +++S +RV+A + S + + TA L + Sbjct: 138 DVFFTLKRDGNLGSGGEIEHTQARLLMSKLRVLAFGNATAAGDTSGDPNGMVRTAVLAVP 197 Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 L A++ +L LR+ D + Sbjct: 198 VADVDRLTLAETSGRLVFALRNPKDNEVIDAGAFAPLP 235 >gi|110833079|ref|YP_691938.1| hypothetical protein ABO_0218 [Alcanivorax borkumensis SK2] gi|110646190|emb|CAL15666.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 298 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 101/264 (38%), Gaps = 31/264 (11%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT----------ENPAKFINVLISKG 53 R + ++ + + ++VA I+A+ ++ + ++ Sbjct: 3 ARWLYMLPALILSVVAVILALVGLARDPSPAKPERAGADEALAQQRAADKPKYTYWVATR 62 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 +L +G +V + + + A ++ G + + G+ + L Sbjct: 63 ELNIGSIVADDDFQKIDVSAPL--------SSALQADAQVVGQRLFQHVRNGEILSQVHL 114 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPTVTVVLS 172 L+ +P RA +DI +SAVGG+++P D VDV++ R + +PT ++L Sbjct: 115 --EAGNRLAQSVPAQFRAFAIDIDNASAVGGLLEPGDLVDVLVHFRKGQDEQPTSMILLK 172 Query: 173 NIRVIAIDHNIDSDERV--------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRS-- 222 I V+A+ + ++ +TA L + L+ A S +L L + Sbjct: 173 AIEVLAVKGQLQDADKTDEEKEKSRSRNATAVLAIPREALPKLLLADSNGELRLAMAGED 232 Query: 223 IADLNPSSSEDSDVWDVQEEGKEI 246 I S+ V +E KE+ Sbjct: 233 IGSEQNESAGGGAVGLSGKEQKEL 256 >gi|186473163|ref|YP_001860505.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815] gi|184195495|gb|ACC73459.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815] Length = 339 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 93/229 (40%), Gaps = 16/229 (6%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 + L EV + + I V++ + D+ G ++ + + V+D Sbjct: 31 FVYRYLGEREAHVRAEVAGKLALRGIEVVVPRRDVPAGTPLSSDAFVSREIAADLVYDDM 90 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 + +A + ++ G P+R S +LP G+RA T +I + Sbjct: 91 VR----VDAFDAFRKAKLVRAVMHGRPLRTSDFDAPRGRDFSDMLPAGQRALTFEIDAVN 146 Query: 141 AVGGMIKPNDHVDVVMVRSL----SERKPTVTVVLSNIRVIAIDHNIDSDE--------R 188 + M++P + VD+ V + + + V ++L + V+A ++++ + Sbjct: 147 STASMLRPGNRVDMYWVGTQAYASAGERKAVRLLLPGVLVLATGRSVNARDAGDVDEPAS 206 Query: 189 VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 T T+++ A +V AQ + L L+LR+ AD + ++ ++ Sbjct: 207 ASRYDTVTMQVPAADAPRIVLAQKMGTLRLILRNAADDDDIAASPVELT 255 >gi|207724790|ref|YP_002255187.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2] gi|206590015|emb|CAQ36976.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2] Length = 311 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 83/240 (34%), Gaps = 29/240 (12%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76 ++ G +A + EN V+++ L G +T + + + P Sbjct: 18 VILGAVAWKSAHRPPAPAAAQQNENGKTLYPVVVTVKPLEAGKPITADQVAVESLPIN-- 75 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136 D ++ G PI G P+ +L + GL+ + G+RA + + Sbjct: 76 PADAFAD------AGKVVGREPITPIGTGVPLIGSQL----SSGLALQVAPGQRAVAITV 125 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDERVL--- 190 VG + P D+VDV +V ++ ++L ++RV+A ++ Sbjct: 126 DEVVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRVLAFGPLAINEGPQTQPE 185 Query: 191 -----------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 TA L + L A +L L LR+ +D + D + Sbjct: 186 SGANTVTRRVDQAKTAVLAVPVESVSQLAIAHQSGRLLLALRNPSDDAEPTVRPQDAQAL 245 >gi|167620126|ref|ZP_02388757.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis Bt4] Length = 234 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 29/228 (12%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--------------PN 88 + + V ++ DL G+++ L W +V G + + Sbjct: 1 PQQVRVRVAAADLPAGLLLRDVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAA 60 Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIK 147 A +L G L+R P+ +G P+ ++ G L++ L G RA ++ I S G+I+ Sbjct: 61 AAGDLKGDLLRHPVREGMPLGPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIE 120 Query: 148 PNDHVDVVMVRS---------LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVGS 193 P D+VDV++ + ER + + +RV+A+ D+ + Sbjct: 121 PGDYVDVLLTQQLAAPGGAPADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRAR 180 Query: 194 TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 T T E++ A+ + + LSL LRS A + + + Sbjct: 181 TVTFEVSSHDAQVITVGAHLGALSLALRSFATSDRGAVGLASAEPPAP 228 >gi|221066740|ref|ZP_03542845.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1] gi|220711763|gb|EED67131.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1] Length = 352 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/304 (15%), Positives = 93/304 (30%), Gaps = 66/304 (21%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT---------------ENPAKF 45 M LT+++ + V A+ I+A + + PA Sbjct: 1 MNLTKILA-GLLVVLAIALAIMAWIMGRQPQRAVAPAPSSINAIDTNISAEASKPRPAPM 59 Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 +V+++ +A G +T L+ V+ + + G + Sbjct: 60 HDVVVTAKPVAAGQKLTAEDLKLVSKTAAVA--------DGVLSAEAAVGRTTLTALAAD 111 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-- 163 P+ ++L+ GLS + G+RA ++ + A G ++P D VDV Sbjct: 112 APLLEQQLI----SGLSLQIEPGQRALSIAVKEPMAAGNHVRPGDFVDVYFTLDSKSNAA 167 Query: 164 ------KPTVTVVLSNIRVIAIDHNI------------------------------DSDE 187 ++L+ RV+A + + Sbjct: 168 DDKLNVDTQTRLLLARSRVLAYGASNVEVPPPTAAQRLKAQQEEEAGNKGQRRNTGNDQR 227 Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 +TA L + + L A+ +L+L LR DL+ + + Sbjct: 228 SQQSANTAVLAVPLDDVERLTLAEKYGQLTLALRHPDDLSVPEAALFATLPTALLPVAGR 287 Query: 248 IIKA 251 + K Sbjct: 288 LAKG 291 >gi|228938208|ref|ZP_04100823.1| hypothetical protein bthur0008_8760 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971086|ref|ZP_04131719.1| hypothetical protein bthur0003_8680 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228788609|gb|EEM36555.1| hypothetical protein bthur0003_8680 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821441|gb|EEM67451.1| hypothetical protein bthur0008_8760 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 286 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 87/242 (35%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ V A VAGI EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 R S++ L G+ A + + + ++ G + PN +VD+ +V+ K + Sbjct: 106 REELPDSAILNLKDGEVAFPLLVDLETSSGNSVIPNTYVDLYFKQIVKDGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|319795563|ref|YP_004157203.1| flp pilus assembly protein cpab [Variovorax paradoxus EPS] gi|315598026|gb|ADU39092.1| Flp pilus assembly protein CpaB [Variovorax paradoxus EPS] Length = 319 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 23/234 (9%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 L + + + ++ +V++++ + G V P ++ + P E + + + Sbjct: 36 YYLRASEREIAASLEKDADSQRRDVVVARQPIGEGSQVLPGMVAKRSVPNEYLHNDALT- 94 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143 P + + G + VP+ G P+ + + +G RA T+ + S++ Sbjct: 95 ---PESFAQFAGRQLTVPVAAGKPLLASFFAAPRK-VFAQEIEQGVRAVTIPVDEISSIS 150 Query: 144 GMIKPNDHVDVVMVRSLSERKPTVTVV--LSNIRVIAIDHNIDSDERV------------ 189 GM++ D +D + V S V+ L ++ V A Sbjct: 151 GMLRAGDRIDFMYVVEKSAANDPSVVIPLLQDVEVRATGQITSEQFAAMRKRADVSADTD 210 Query: 190 ----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 +T T+ + P A+ L+ AQ + K+ LR+ D ++ V Sbjct: 211 PYARQRYATVTVAVQPQDAQKLILAQRLGKIIATLRNPEDRATMTTGVDAVDLD 264 >gi|229065593|ref|ZP_04200823.1| hypothetical protein bcere0026_55960 [Bacillus cereus AH603] gi|228715662|gb|EEL67455.1| hypothetical protein bcere0026_55960 [Bacillus cereus AH603] Length = 286 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 86/242 (35%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ V A VAGI EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P +++ + + +E+ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDSIPPNALR-----VSKKEVVGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L + A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKNEEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+ + Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKMLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|303241416|ref|ZP_07327919.1| SAF domain protein [Acetivibrio cellulolyticus CD2] gi|302591025|gb|EFL60770.1| SAF domain protein [Acetivibrio cellulolyticus CD2] Length = 255 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 89/252 (35%), Gaps = 30/252 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MKL + G+ +V + +++P + ++ D+ G V Sbjct: 1 MKLNFIKSRTAIGLICIVLSLFICFILTPMFNSGLKA-------QTEIIRISSDMKKGEV 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + N LE V N+ I +++ G V ++KGD I K+ D+ Sbjct: 54 IAGNKLEVVKVGAYNLPQNIIKR------KEDVVGKYVNCDLMKGDYILSSKVTDKPLLE 107 Query: 121 LSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 L L K A ++ I ++ + G ++ D V ++ + T+ L ++V+ Sbjct: 108 FEYLNDLDGTKVAMSITIKSFAAGLSGKLESGDIVTLISSNYDNMGSATIPSELKYVKVL 167 Query: 178 AIDHNI------------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLS--LVLRSI 223 A D+ + ST TL + QAK L + + LV R Sbjct: 168 AATTESGMDKQQAQAEIKKEDKETELPSTLTLIVNTEQAKVLADLEQKGNIHATLVYRGS 227 Query: 224 ADLNPSSSEDSD 235 + D D Sbjct: 228 GENAKKFLNDQD 239 >gi|299532818|ref|ZP_07046205.1| putative signal peptide protein, CpaB like protein [Comamonas testosteroni S44] gi|298719042|gb|EFI60012.1| putative signal peptide protein, CpaB like protein [Comamonas testosteroni S44] Length = 329 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 95/282 (33%), Gaps = 36/282 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI------NVLISKGDLA 56 + + I V + A+ + + Q + A +V+++ + Sbjct: 1 MVNVAKIAVGVLLAVALALGVYGWMLARAPQAADPQASASASDSKSNAGMSVVVAAQAIP 60 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G + L+ P + DG ++ Q G + V + KG P+ ++V Sbjct: 61 AGQALKTEDLQLTQLPAK--PDGAYGEI------QAAVGSVPAVDVPKGAPVLQGQMV-- 110 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSN 173 GL+ L +G+RA + + S G I+P D VDV + ++LS Sbjct: 111 --TGLALKLSEGERAVAVKVDESIGAGNRIRPGDFVDVFFALRRDGNEIDQSQARLLLSR 168 Query: 174 IRVIAID------------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 RV+A TA L + + L+ S L L LR Sbjct: 169 KRVLAYGAASVDALSSAEKTEGKQANGPDNARTAVLAVPVAEVNQLLLGGSNGSLLLALR 228 Query: 222 SIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEGIS 263 + D+ S + + + + K V V +G + Sbjct: 229 NPMDMTEPDS---EKFAPLPGILAVAMAKGSVAVPLEGADAA 267 >gi|330938338|gb|EGH41970.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. pisi str. 1704B] Length = 319 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 88/282 (31%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45 M + + V + AL+A + + + P + P Sbjct: 1 MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAVVIPPSEPVTTETAIQTPPTPPVED 60 Query: 46 ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T + L + A+ ++ G + Sbjct: 61 ALRHNVVVLAKDIPANTAITADDLTIERL--------KVAPPRSFEAIDKIVGRSSWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + G L+ ++ +RA + + + G + P D+VDV++ Sbjct: 113 TAGSWLTESNF--EAGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 170 Query: 163 RKP--TVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202 P + VV+ +R++ + D + +++ + T T+ L Sbjct: 171 SNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDLNADERLKQEQQRINARTVTVALPQA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N ++ + Sbjct: 231 LVARLMLASQTGVLRLAVRSADEGNLQDYWANEAGGPDAAER 272 >gi|323341956|ref|ZP_08082189.1| flp pilus assembly CpaB [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464381|gb|EFY09574.1| flp pilus assembly CpaB [Erysipelothrix rhusiopathiae ATCC 19414] Length = 269 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 105/283 (37%), Gaps = 58/283 (20%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +L+ +VV+ AG+ + L++P +E+ V+++ L Sbjct: 1 MDKNKLISVVVA------AGVFLLALMNPIQGLKKEI---PKKDLTQVVVALKPLTAQTR 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK--LVDRGN 118 +T +++E ++ +G D + + G + + GD EK +V +G+ Sbjct: 52 ITQDMIEVKNVHKDAAPEGAFADAER------VVGKVTTTKMSVGDMFTGEKVEVVGQGS 105 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----------------- 161 GLS++L RA T+ + + G+I+ + +D++ V Sbjct: 106 SGLSTVLTDNMRAYTVKLEGQYGMQGLIRVGNKIDIITVLDSDLPEDTLQKYDYLKKNYP 165 Query: 162 ---------------------ERKPTVTVVLSNIRVIAIDHNIDSDER---VLVGSTATL 197 ++ ++L N V+AID + D++ + +T TL Sbjct: 166 QLYAGSVETAVDGKERIPVLGLKEKKAVLLLQNKEVLAIDQDTLPDDKKVADKMYTTVTL 225 Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 ++ A L ++SV +LRS D+ Sbjct: 226 AVSAEDALKLAVSESVGTNRAILRSHDHDKVDKVPGVITGDLL 268 >gi|71737039|ref|YP_276549.1| CpaB family Flp pilus assembly protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557592|gb|AAZ36803.1| Flp pilus assembly protein CpaB family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 313 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 81/276 (29%), Gaps = 48/276 (17%) Query: 7 MGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-----------------INV 48 M + V + AL+AG + + + P P NV Sbjct: 1 MVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVEDALRHNV 60 Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ D+ +T L + G + +L G + G + Sbjct: 61 VVLARDVPAYTPITAEDLTVERL--KVAPPGSF------EHIDKLVGRSTWRTLTAGTWL 112 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--T 166 G L+ ++ +RA + + G + P D+VDV++ + Sbjct: 113 SENSF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDTSNLNRS 170 Query: 167 VTVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPMQAKALV 208 VV+ +RV+ + + D T T+ + L+ Sbjct: 171 SQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEALLARLM 230 Query: 209 AAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 A L L +RS + N + S+ + Sbjct: 231 LASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 266 >gi|300697743|ref|YP_003748404.1| Flp pilus assembly protein precursor (CpaB) [Ralstonia solanacearum CFBP2957] gi|299074467|emb|CBJ54017.1| putative Flp pilus assembly protein precursor (CpaB) [Ralstonia solanacearum CFBP2957] Length = 311 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 85/245 (34%), Gaps = 29/245 (11%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76 ++ G +A + EN V+++ L G + + + + P Sbjct: 18 VILGAVAWKSAHRPPAPAVAQQNENGKTLYPVVVTIKPLEAGKPIAADQVAVQSLPIN-- 75 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136 DV ++ G VPI G P+ +L + GL+ + G+RA + + Sbjct: 76 PADAFADV------GKVVGREPIVPIGIGVPLIGSQL----SSGLALQVAPGQRAVAITV 125 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDERVL--- 190 VG + P D+VDV +V ++ ++L ++RV+A ++ Sbjct: 126 DEVVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRVLAFGPLAINEGPQTQPE 185 Query: 191 -----------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 TA L + L A +L L LR+ +D + D + Sbjct: 186 AGANTVTRRVDQAKTAVLAVPVESVSQLAIAHQSGRLLLALRNPSDDAEPTVRPQDALAL 245 Query: 240 QEEGK 244 + Sbjct: 246 AMVSR 250 >gi|312882143|ref|ZP_07741892.1| Flp pilus assembly protein CpaB [Vibrio caribbenthicus ATCC BAA-2122] gi|309370189|gb|EFP97692.1| Flp pilus assembly protein CpaB [Vibrio caribbenthicus ATCC BAA-2122] Length = 276 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 96/270 (35%), Gaps = 27/270 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ I + + G++ EV++ +++ V ++ G Sbjct: 1 MRTPLIIFITIVALIVGALGVVDFLNTKDKPTVITEVVSPEEDQYVAVWVTINFYNRGDE 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE-KLVDRGNG 119 VT + P I + + + + L+ + G+ + E ++ G Sbjct: 61 VTSQGVVKKQLPLNEALKLGIREDAEISFSPSV---LLNRSLKTGEVVLPEYQVAPNQPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167 + L+ G + IS + + I+P ++D++ V S +E Sbjct: 118 YVDLLVSPGMTLYPLQISNRNLIKDYIRPGSYIDILTVSSPNENLAGNLDKPKRFKGVEA 177 Query: 168 TVVLSNIRVIAIDHNIDSDE----------RVLVGSTATLELTPMQAKALVAAQSVAKLS 217 T+ L N++V+ I D E +T +E+ P + L AQ + Sbjct: 178 TMFLKNVKVLNIGGGGDDSENNYVTAQSPVEEDGVTTVVIEVDPNELTRLALAQRTMHIE 237 Query: 218 LVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 V RS A +E ++ D +E++ Sbjct: 238 -VYRSQAYTQSEHAEVRNIIDNYTGIEELR 266 >gi|296122068|ref|YP_003629846.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776] gi|296014408|gb|ADG67647.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776] Length = 334 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 14/222 (6%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + RL +++ V V G++ + + + EE + NV ++ D+ G ++T Sbjct: 1 MRRLTPALLTLVMFGVVGLLVVAYIGKSLLAREE--KKPVIATRNVPMAISDIEPGTLIT 58 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + + A + + G + R I +PIR +L G Sbjct: 59 EGHIGLGPVQNSQL------KPDMLLANRVIVGRVARTKIRAAEPIRAGQLYQPGELP-D 111 Query: 123 SLLPKGKRAATMDISISSA-VGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRVI 177 + G RA ++ ++ V GMIKP ++VDV+ + + + ++VI Sbjct: 112 LRVADGMRAVSISVAEMVGIVDGMIKPGNYVDVLFTVESQSNADLQGGVTMRLFEGVKVI 171 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 AI+ + + TLELT QA + A++ L+L+ Sbjct: 172 AINRSFTQSRVERGVNRVTLELTQAQANIITLAEAKGALTLI 213 >gi|330959994|gb|EGH60254.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 319 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 88/273 (32%), Gaps = 48/273 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPH-----------------HVQTEEVITENP 42 M M + V + AL+AG + + + P Q Sbjct: 1 MSSRITMVLAVLFLLGALIAGYLGIVVGRPAEEPAAVPAPAPTVTAELPPQAVPTPPVED 60 Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 A +V++ D+ +TP L + G + + +L G + Sbjct: 61 ALRHDVVVVARDVPAYTPITPEDLLIERL--KVAPPGSF------DTIDKLVGRSSWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + G L+ ++ +RA + + G + P D+VDV++ + Sbjct: 113 SAGTWLSESNF--EAGGTLARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLAEDT 170 Query: 163 RKPT--VTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202 P VV+ +RV+++ D + ++R T ++ + + Sbjct: 171 ANPVRSTQVVVPALRVLSVGELLGPDRNGKPVQHVTADERLQQEQRRSSARTVSVAVPEV 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 L+ A L L +RS + N D Sbjct: 231 LLGRLMLASQTGVLRLAVRSADEGNLQDYWAGD 263 >gi|89892806|ref|YP_516293.1| hypothetical protein DSY0060 [Desulfitobacterium hafniense Y51] gi|89332254|dbj|BAE81849.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 274 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 19/217 (8%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G+I + L + ++ ++ ++ ++ G +T + ++ V + Sbjct: 9 VVGVICILLSLLICFGVTPLFNKSVSQKTEIVRVVKEIKAGDEITKDTVQTVEVGGFGLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 D I + + G + + GD I KL D + L L K+A ++ Sbjct: 69 DNVIRQS------ETVIGKYAKSDLSIGDYILNTKLSDTPAAENAYLYNLDGTKQAMSVT 122 Query: 136 I-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184 I S ++ + G ++ D V V+ + + L + VI++ Sbjct: 123 IKSFANGLSGKLQSGDIVSVIAADYKKQGTTVIPAELKYVEVISVTASSGYDANTGEAKS 182 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 D+ + ST TL ++P Q+K L +S KL L L Sbjct: 183 EDDDRELPSTVTLLVSPEQSKVLAELESDGKLHLSLV 219 >gi|126733572|ref|ZP_01749319.1| Flp pilus assembly CpaB [Roseobacter sp. CCS2] gi|126716438|gb|EBA13302.1| Flp pilus assembly CpaB [Roseobacter sp. CCS2] Length = 258 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 94/238 (39%), Gaps = 16/238 (6%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVIT--ENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 A A + + + E+ + +++ DL G ++T + ++ + Sbjct: 1 MGLAGFAVYMVNQYMDTQASALEQERQRSATAIRTVDIYAPSRDLTYGELLTADDVQIIK 60 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGK 129 + +++ +G + +VR+P+ +PI K+ + G G+++LL G Sbjct: 61 YARDHLPEGVFATEEELFPEGLNTPRVVRLPMQVNEPILTAKVTEAGAPQGITALLDSGM 120 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189 RA + SI+ A ++P D +D+ + + + +V S + +I+++ + Sbjct: 121 RAFPLPDSITRAFASELRPTDLIDLYWIGRVGNGPSSSRLVKSRMEIISLEPS------- 173 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS-SEDSDVWDVQEEGKEI 246 ++++ L + LSL DL + ++++ DV + Sbjct: 174 -----VVIQVSQEDFADLQVLSAAGSLSLTPVGRDDLEAGDLTIETNIRDVLGIVAPV 226 >gi|260768626|ref|ZP_05877560.1| putative pilus assembly protein [Vibrio furnissii CIP 102972] gi|260616656|gb|EEX41841.1| putative pilus assembly protein [Vibrio furnissii CIP 102972] Length = 312 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 93/239 (38%), Gaps = 16/239 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + + +FA+ + +++ + + P + + + DL G ++ Sbjct: 6 NKAKALKLSAMILFAIAVVFLVSGMLTANPSPPKNAAVSKPIEQYDAWVVVDDLTQGTLI 65 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T ++++ + D I + G V+ ++ G + + LV N + Sbjct: 66 TRDMMKPTRV--TQLGDSLIQNPDV------ALGRRVKQDVIAGAYLTSKMLV--PNRPV 115 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIA 178 LP+ RA + VGG ++P DHVDV+++ ++ + + S++ V+A Sbjct: 116 IDDLPENYRAIAIRAGEVLTVGGYLQPGDHVDVMLLLKPNKESGAITSARRIASDLMVLA 175 Query: 179 IDHN---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 I D ER + L + A L+ A + ++ L +L + E S Sbjct: 176 IGQQQNGTDKFEREAQAKSVVLAVHESLAPVLLLADASGEIRLAAVGSKELAAGTYEPS 234 >gi|257790303|ref|YP_003180909.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|325830168|ref|ZP_08163625.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1] gi|257474200|gb|ACV54520.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|325487635|gb|EGC90073.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1] Length = 215 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 16/224 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMR--LVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58 MK +R I ++ A A + A + E + + + V ++K D+A G Sbjct: 1 MKRSRTTIIGIACGLACAACVFAYAQGVRGEADAARAEALARYGGEQLEVCVAKRDIAAG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 V + +E + + + + ++ G IL G+ + + + Sbjct: 61 ESVDASAVETRLWVADLLPAEAFR------SSDDVVGKKASSTILAGEVLSERRF---RD 111 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 G +P+G A ++ AVGG + VDV + V+ S + V+A Sbjct: 112 AGSRLDVPEGLTALSVPAKDVQAVGGAVAAGSRVDVYAT-----GGTSTDVLASGVLVLA 166 Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 + S T+ + P + +VAA +L L Sbjct: 167 TSASAQESTTDAKVSWITVAVAPESVQEIVAAAQKTELYFTLPG 210 >gi|228912580|ref|ZP_04076242.1| hypothetical protein bthur0013_66390 [Bacillus thuringiensis IBL 200] gi|228847049|gb|EEM92041.1| hypothetical protein bthur0013_66390 [Bacillus thuringiensis IBL 200] Length = 286 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 84/242 (34%), Gaps = 41/242 (16%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ V VAGI EN K V+++ D+ Sbjct: 1 MKPSKFQKKQITAVGLAAITVAGIYGYNHF----------AVENAVKPTKVVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + +L P + + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEEMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKDGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++ Q + L A+++ Sbjct: 166 FQGVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSTEQLQYLNRAKTLG 225 Query: 215 KL 216 + Sbjct: 226 DV 227 >gi|319791193|ref|YP_004152833.1| flp pilus assembly protein cpab [Variovorax paradoxus EPS] gi|315593656|gb|ADU34722.1| Flp pilus assembly protein CpaB [Variovorax paradoxus EPS] Length = 319 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 92/254 (36%), Gaps = 24/254 (9%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 L + + + ++ +V+++ L G V P ++ + P E V + I Sbjct: 36 YYLRASEREIAASLEKDADSQRRDVVVANRALGDGTTVLPTMVAKRSVPNEYVHNDAIT- 94 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143 P + G + VP+ G P+ + + +G RA T+ + S++ Sbjct: 95 ---PETFSQFAGRQLSVPVAAGKPLLASFFSAPRKV-FAQEIEQGVRAITIPVDEISSIS 150 Query: 144 GMIKPNDHVDVV--MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV------------ 189 GM++ D +D + + +S + V +L ++ V A Sbjct: 151 GMLRAGDRIDFMYMVEKSAANDPSVVVPLLQDVEVRATGQITSEQFAAMRKRSDVSADTD 210 Query: 190 ----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245 ST T+ + P A+ L+ AQ + K+ LR+ D + D D+ Sbjct: 211 PYAQQRYSTVTVAIQPQDAQKLILAQRLGKIIATLRNPEDRAT-MTSGVDAVDLDAIVAG 269 Query: 246 IQIIKAGVIVNKDG 259 + ++ + G Sbjct: 270 FRPQRSHAMAVSSG 283 >gi|254245568|ref|ZP_04938889.1| Flp pilus assembly CpaB [Burkholderia cenocepacia PC184] gi|124870344|gb|EAY62060.1| Flp pilus assembly CpaB [Burkholderia cenocepacia PC184] Length = 309 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 88/263 (33%), Gaps = 30/263 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + A++ GI A ++ + ++I+ L G + Sbjct: 3 NNLTKIIAGLLIAIAVLLGIYAW-VLGRSASSPPPAQPRTAVTAVPIVIATRTLPGGQPI 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L+ + G +D L G + + P+ + LV GL Sbjct: 62 PADALKVQS-STVPAPAGAFNDPAL------LVGRMPIRDVPASTPVVADALV----SGL 110 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---------RSLSERKPTVTVVLS 172 + + G+RA + + ++AVG ++P + VDV + + ++LS Sbjct: 111 AEDVQPGERAVAVRVDETNAVGNRLRPGNFVDVFLNLKREVGTTMLDGEVSQTQARLLLS 170 Query: 173 NIRVIAIDHNIDSDER---------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 +RV++ + A L + Q AL ++ +L+ LR+ Sbjct: 171 KVRVLSFGDATAERDSGNNNGGNGQPTGARIAVLAVPTAQVDALTLGEASGRLTFALRNP 230 Query: 224 ADLNPSSSEDSDVWDVQEEGKEI 246 D + + D + + Sbjct: 231 RDDELALQTVAVRTDNKLSPSAL 253 >gi|237798382|ref|ZP_04586843.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021234|gb|EGI01291.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 318 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 89/281 (31%), Gaps = 47/281 (16%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAK--------------- 44 M M + V + AL+AG + + + V + Sbjct: 1 MSSRITMVLAVLFLLGALIAGYLGIVVSRQAEVPAAVTQSAPSPAEQAPQAPAPQPVEDA 60 Query: 45 -FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 NV++ D+ +T + + + G ++++ L G + Sbjct: 61 LRHNVVVVARDIPAYTPITADDVVIERL--KVAPPGSF------DSVERLVGRSSWRTLN 112 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 G + G L+ ++ +RA + + + G + P D+VDV++ Sbjct: 113 AGTWLSESSF--DAGGTLARMIRPYERALALQVDEVISASGQLSPGDYVDVLLYLPEDTL 170 Query: 164 KP--TVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPMQ 203 P + VV+ +R++ I D + ++ T T+ + Sbjct: 171 NPNRSSQVVVPALRILGIGGLLGTDHDGKPVQNISADERLRQEQLRANARTVTVAVPEAL 230 Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N + ++ + Sbjct: 231 VSRLMLASQTGVLRLAVRSADEGNLQNYWSAEPGSSDVAER 271 >gi|85711967|ref|ZP_01043021.1| Flp pilus assembly protein CpaB [Idiomarina baltica OS145] gi|85694153|gb|EAQ32097.1| Flp pilus assembly protein CpaB [Idiomarina baltica OS145] Length = 226 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 85/209 (40%), Gaps = 26/209 (12%) Query: 1 MKLTR--LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58 MK + ++ +++S V + ++ + + T +++ DL G Sbjct: 1 MKAKKQWVILLLMSIVLTAFTLWLLRSYLNYETAKRLKAETPPEQA---IVVFNQDLKAG 57 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV----RVPILKGDPIRLEKLV 114 +V ++L +P V G++ ++ G ++ + + G P+ + Sbjct: 58 TLVDASMLSLRQYPTHLVNPGWMT--------EDYVGTILDLPIKRAVTAGSPVEETQFE 109 Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174 ++ LP+ A T+ + + G ++P+D VD+V + + + V+ N+ Sbjct: 110 LNYQKRMADRLPENHWAITLPVDLMQLHDGQLQPDDRVDLVSKKPMQDSLS----VVENL 165 Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQ 203 RV+++ + + G + TL ++ Q Sbjct: 166 RVLSV-----NGTDLGQGMSVTLAVSAKQ 189 >gi|317489752|ref|ZP_07948251.1| SAF domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316911098|gb|EFV32708.1| SAF domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 215 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 16/224 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMR--LVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58 MK +R I ++ A A + A + E + + + V ++K D+A G Sbjct: 1 MKRSRTTIIGIACGLACAACVFAYAQGVRGEADAARAEALARYGGEQLEVCVAKRDIAAG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 V + +E + + + + ++ G IL G+ + + + Sbjct: 61 ESVDASAVETRLWVADLLPAEAFR------SSGDVVGKKASSTILAGEVLSERRF---RD 111 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 G +P+G A ++ AVGG + VDV + V+ S + V+A Sbjct: 112 AGSRLDVPEGLTALSVPAKDVQAVGGAVAAGSRVDVYAT-----GGTSTDVLASGVLVLA 166 Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 + S T+ + P + +VAA +L L Sbjct: 167 TSASAQESTTDAKVSWITVAVAPESVQEIVAAAQKTELYFTLPG 210 >gi|302387867|ref|YP_003823689.1| SAF domain protein [Clostridium saccharolyticum WM1] gi|302198495|gb|ADL06066.1| SAF domain protein [Clostridium saccharolyticum WM1] Length = 283 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 83/234 (35%), Gaps = 27/234 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK IVV + + A II L + + ++ ++ G Sbjct: 1 MKDLLKNRIVVGLLCIITALIICFGL--------TPMFNNALQSKVELVRVTTEIKKGDE 52 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-- 118 +T ++ V N+ I +++ G + KGD I KL D Sbjct: 53 ITAGMITAVETGGYNLPSDVIYK------KEDVIGKFANADLYKGDYILKSKLSDTPQLK 106 Query: 119 GGLSSLLPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 S L RA ++ I ++ + G ++ D V ++ RK + L + +I Sbjct: 107 NEYLSGLDGTNRAISVTIKSFAAGLSGKLERGDIVSLIASDVGEARKTLILDELQYVEII 166 Query: 178 AIDHNIDSD----------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 A + +D E + ST T+ +TP QA+ L + KL L Sbjct: 167 ATTDSSGNDRNIQEQPKDNEDTELASTITVLVTPQQARLLAELEQTGKLHAALV 220 >gi|304315801|ref|YP_003850946.1| SAF domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777303|gb|ADL67862.1| SAF domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 213 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 79/227 (34%), Gaps = 32/227 (14%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R+ I +S + A V + + K I V+ + D+ G + Sbjct: 5 KKRIFLISISLILAAVLAFLQYQYFH---------KMTESDKKIQVIAAFSDIKAGEKI- 54 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + L P+ +P +V I G + + Sbjct: 55 DSKLGVKLIPQSAYVKDMYLLSEKPTG-------YAKVDIAAGSYVMKSMVSKDNV---- 103 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI--- 179 +L +G R T+ +++ S++ G IKP D VDV E+ V+ + + + I Sbjct: 104 PVLKEGMRRVTISVNLESSLAGKIKPGDLVDVGWAPKSDEKGENGAVIANKVEIYDIVNK 163 Query: 180 --------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 D N D L+ + TL +TP QA A+ ++ L L Sbjct: 164 SGGDIKKADKNNQYDTDSLLPAAVTLIVTPEQAIAIKEYEAKGSLFL 210 >gi|317489770|ref|ZP_07948269.1| flp pilus assembly protein CpaB [Eggerthella sp. 1_3_56FAA] gi|316911116|gb|EFV32726.1| flp pilus assembly protein CpaB [Eggerthella sp. 1_3_56FAA] Length = 306 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 6/233 (2%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 ++ RL IV + V + + E T L++ D+ G + Sbjct: 77 RVKRLATIVAASVALTAVSVSYGVWSAAASRAAVEHATAGALPT---LVAAADIRAGDAI 133 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T + P + +A G V I G + + G L Sbjct: 134 TAEAVTVQDVPATYRAASAL-GGEALDAEGLAAGGRAIVDIPAGTQLSSSFVTGMGGDRL 192 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 S+ L G +A T+ + + + + G ++P D V +V S + + V RV+A+ Sbjct: 193 SAELGAGLQAVTLAVDVETGLAGHVRPYDTVRIVSAEGASAGEAFLETVCERARVVAVGD 252 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 D+ ++ T+E++P +A A+ AQ ++SLVL + D D Sbjct: 253 --DATGVQSGSASVTVEVSPEEADAVREAQFAGRVSLVLVAADDAFEEVGADG 303 >gi|92113781|ref|YP_573709.1| Flp pilus assembly CpaB [Chromohalobacter salexigens DSM 3043] gi|91796871|gb|ABE59010.1| Flp pilus assembly CpaB [Chromohalobacter salexigens DSM 3043] Length = 342 Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 88/260 (33%), Gaps = 20/260 (7%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQ-----TEEVITENPAKFINVLISKGD 54 M L + V V AL G RL E TE P V+++ Sbjct: 1 MSPKTLKIVAVGLVIVALALGFTGWRLTQQAMPPSVTESAVESATETPVMRHPVVVATRH 60 Query: 55 LAVGMVVTPNILE--WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK 112 LA G + + + P V D + L+G ++ P+ G+ IR + Sbjct: 61 LAAGTRLGADEVTQAATQTPRLAVVDFPNAVPRSFAKREALEGRVLTRPVDAGEAIREDD 120 Query: 113 LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV----MVRSLSERKPTVT 168 L+S +P G RA + + GG I P D VDV+ S R+ Sbjct: 121 FAL--GSVLASQVPAGYRALAIGVDDVVGGGGFIAPGDRVDVLFQAQAASSGDRRETLAR 178 Query: 169 VVLSNIRVIAIDH------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 +L ++ V+ D + TA + +T QA L+ A+S +L L + Sbjct: 179 RLLDDVLVLGYGDDLRSRAENDDNGGRNGARTAVVAVTDAQAPKLLLAESTGRLRLAVVG 238 Query: 223 IADLNPSSSEDSDVWDVQEE 242 + D Sbjct: 239 SRERVDRLMADLVTAPDGGG 258 >gi|317403406|gb|EFV83919.1| flp pilus assembly protein CpaB [Achromobacter xylosoxidans C54] Length = 279 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 84/200 (42%), Gaps = 12/200 (6%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 + + + E+ ++ L++ DL G +TP L P + I +P Sbjct: 36 RQRVDTLAGEHREAMVSRLVAARDLPAGTELTPAHLAIRDIPAQWAPAASI----EPRDG 91 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGG---LSSLLPKGKRAATMDISISSAVGGMIK 147 + G + + + +GDP+ L + L++ L G+RA + ++ V +++ Sbjct: 92 DSVLGTRLGLALAQGDPVLSGCLARADSASPPALAARLDPGQRALQVPVADLGTVADLLR 151 Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL 207 D VD+ + R+ T +L +RV+A+ + TL TP QA Sbjct: 152 VGDLVDIYVSFPHRGRE-VTTPLLQGVRVLAV----PDAGGGTGPAQVTLAATPNQAMRY 206 Query: 208 VAAQSVAKLSLVLRSIADLN 227 +AA+ L+ ++R+ AD Sbjct: 207 LAARRAGTLTGLVRNRADTA 226 >gi|258515698|ref|YP_003191920.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM 771] gi|257779403|gb|ACV63297.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM 771] Length = 247 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 91/243 (37%), Gaps = 29/243 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K + + ++ + A+ AG + M+ + + + V+++K ++ + Sbjct: 6 KKSSSYLLFITLIAAVAAGFLGMQTIRKYTA------------VLPVVVAKVEIPAYTPI 53 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T + EN+ I PN+ Q L G + R I G P+ + L G G L Sbjct: 54 TEENEK-EMLAVENIPKAAIKQGMFPNS-QNLIGKVTRTVIPAGYPVSKDFLAIEGPGSL 111 Query: 122 -----SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSN 173 S RA + + +A+ G I P D VDVV L P + Sbjct: 112 LTTQISQFKDPKLRATPVTVQGVNALDGKIMPGDRVDVVGNMKLPMGGLQQPVSQTIGVQ 171 Query: 174 IRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA-DLNPSSSE 232 + VIA+ + L LTP QA+ + A++ + L L D N + + Sbjct: 172 VPVIAV------TGEPNKPTGVILGLTPQQAQDVGFAETAGTIKLSLNPYQPDTNAARTT 225 Query: 233 DSD 235 + Sbjct: 226 PTT 228 >gi|283778868|ref|YP_003369623.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068] gi|283437321|gb|ADB15763.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068] Length = 330 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 96/262 (36%), Gaps = 21/262 (8%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN------PAKFINVLISKGDLA 56 + V++ V LVA I + + V + V P I ++I+K +L Sbjct: 6 PATVTFGVMAIVLGLVAAYIVRQSLQKPPVVAKVVAPVPPAPAPIPDPGIRIVIAKHNLP 65 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 +VT + +E V P+ F G + + G +R E L+ Sbjct: 66 KHTLVTADDVEVVFVPKT-----FPKLETIMKGPATAQGRITNRALPAGQVMREEYLLGI 120 Query: 117 GNG--GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---SERKPTVTVVL 171 G G L+ +P G RA T++ A G + D VD+ M + ++ Sbjct: 121 GEGLPPLAERIPAGYRAVTIEAMNVDAGGKRLSEGDLVDISMTVEGTHPDLGEVLTRTLM 180 Query: 172 SNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 ++ V+ ++ G + T+ + P A L+ AQ LS+ L S A+ Sbjct: 181 KDVMVVDAAAGNPIVLDKRRDQPRSGDSITVAVLPADANKLMVAQKTGVLSVSLCSAAEA 240 Query: 227 NPSSSEDSDVWDVQEEGKEIQI 248 + DS KE+ + Sbjct: 241 PADDTVDSITRRQLLGLKEVPV 262 >gi|325288260|ref|YP_004264441.1| Flp pilus assembly protein CpaB [Syntrophobotulus glycolicus DSM 8271] gi|324963661|gb|ADY54440.1| Flp pilus assembly protein CpaB [Syntrophobotulus glycolicus DSM 8271] Length = 274 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 81/217 (37%), Gaps = 19/217 (8%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G+I + L + ++ ++ ++ ++ G +T + ++ V + Sbjct: 9 VVGVICILLSLLICFGVTPLFNKSVSQKTEIVRVVKEIKAGDEITKDTVQTVEVGGFGLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 D I + G + + GD I KL D + L L K+A ++ Sbjct: 69 DNVIRQSEM------VIGKYAKSDLSIGDYILNTKLSDTPAAENAYLYNLDGTKQAMSVT 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184 I ++ + G ++ D V V+ + + L + VI++ Sbjct: 123 IKSFANGLSGKLQSGDIVSVIAADHKKQGSTVIPAELKYVEVISVTASSGYDANTGEAKS 182 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + + ST TL ++P Q+K L ++ KL L L Sbjct: 183 EKDERELPSTVTLLVSPEQSKVLAELEADGKLHLALV 219 >gi|160897516|ref|YP_001563098.1| Flp pilus assembly protein CpaB [Delftia acidovorans SPH-1] gi|160363100|gb|ABX34713.1| Flp pilus assembly protein CpaB [Delftia acidovorans SPH-1] Length = 363 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 89/274 (32%), Gaps = 55/274 (20%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV--- 57 M LT+++ + A+V +A L S + A+ + + + V Sbjct: 16 MNLTKILA-GLLVGLAIVLAGLAWLLGSQPARPVAQPSPAASAQPAPEPVPQHAVVVVAQ 74 Query: 58 ----GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 G + ++ P A ++ G + + G P+ ++L Sbjct: 75 AIAAGQRIGSEDVKLAQLPAPV--------PGSFAATDDVLGRTTLMALTPGTPLFEQQL 126 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTV 169 + GL+ L G+RA + I A G ++P D VDV + + Sbjct: 127 L----SGLALQLEPGQRALAIAIREQMAAGHHVRPGDFVDVYFTLDGKSDQAPVDAQTRL 182 Query: 170 VLSNIRVIAIDHNI-------------------------------DSDERVLVGSTATLE 198 +L+ RV+A + +R +A L Sbjct: 183 LLARSRVLAYGSGSVERPPMPAVQRQAQQDKESAGSSLRRASAADQTGQRPENVQSAVLA 242 Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 + + L A+ +L+L LR+ DL+ + Sbjct: 243 VPLDDVERLTLAEKFGQLTLALRNPDDLSVPDPK 276 >gi|330953052|gb|EGH53312.1| Flp pilus assembly protein CpaB [Pseudomonas syringae Cit 7] Length = 319 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 89/282 (31%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVIT-----------------ENP 42 M + + V + AL+AG + + + + Sbjct: 1 MSSRITLVLAVLFLLGALIAGYLGIAVSKQAEAPAVVIPPNGPVTTVTTIQTPPTPPVED 60 Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 A NV+ D+ +T + L + G A+ ++ G + Sbjct: 61 AVRHNVVGLARDVPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + G L+ ++ +RA + + + G + P D+VDV++ Sbjct: 113 TAGSWLTESSF--DTGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 170 Query: 163 RKP--TVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202 P + VV+ +R++ + D + +++ + T T+ + Sbjct: 171 SNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPQA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N +D + + Sbjct: 231 LVARLMLASQSGVLRLAVRSADEGNLQDYWANDAGGPEAAER 272 >gi|257790321|ref|YP_003180927.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|325830034|ref|ZP_08163491.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1] gi|257474218|gb|ACV54538.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|325487501|gb|EGC89939.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1] Length = 306 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 88/233 (37%), Gaps = 6/233 (2%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 ++ RL IV + V + + E T L++ D+ G + Sbjct: 77 RVKRLATIVAASVALTAVSVSYGVWSAAASRAAVEHATAGALPT---LVAAADIRAGDAI 133 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T + P + +A G V I G + + G L Sbjct: 134 TAEAVTVQDVPATYRAASAL-GGEALDAEGLAAGGRAIVDIPAGTQLSSSFVTGMGGDRL 192 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 S+ L G +A T+ + + + + G ++P D V +V S + + V RV+A+ Sbjct: 193 SAELGAGLQAVTLAVDVETGLAGHVRPYDTVRIVSAEGASAGEAFLETVCERARVVAVGD 252 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 + S + ++ T+E++P +A A+ AQ ++SLVL + D D Sbjct: 253 DATSVQS--GSASVTVEVSPEEADAVREAQFAGRVSLVLVAADDAFEEVGADG 303 >gi|258514750|ref|YP_003190972.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM 771] gi|257778455|gb|ACV62349.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM 771] Length = 286 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 87/238 (36%), Gaps = 31/238 (13%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V GV +V +I ++P Q+ + ++ D+ G +T ++++ V Sbjct: 9 VLGVICIVLALIICFGLTPLFNQSVS-------QKAQIIRVVKDIKAGDAITKDMVQTVE 61 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128 N+ + I + G + GD I KL D + L L Sbjct: 62 VGGYNLPEDVIKQ------QEAALGKYAVADLSPGDYILTAKLSDTPASENAYLYNLNGD 115 Query: 129 KRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179 K+A ++ I + + + G + D V V+ + + L+ + VI + Sbjct: 116 KQAISVSIKNFAGGLSGKLISGDIVSVIAPDYKKQGMTVIPPELTYVEVIGVTASTGYDT 175 Query: 180 -------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 D + D + +T TL ++P Q+K L +S KL L L ++ Sbjct: 176 DQQDTGTDSSAKDDSEKQLPATVTLLVSPEQSKILAELESDGKLHLSLVYRGSKESAA 233 >gi|54309659|ref|YP_130679.1| hypothetical protein PBPRA2495 [Photobacterium profundum SS9] gi|46914097|emb|CAG20877.1| Hypothetical protein PBPRA2495 [Photobacterium profundum SS9] Length = 284 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 97/278 (34%), Gaps = 36/278 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + I V + G +A L+S + V E K+I V + LA G Sbjct: 1 MNSKIIFVIAFLAVLTGLYG-MADTLLSTTDTASPPVTEEKEIKYITVWRATSALARGQT 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++P+ L EE I+ N L+ + + +G + E G G Sbjct: 60 LSPSSLTREQLTEEAALSLGINSDVTLNFEPT---TLMNMDVKQGALVFPELQTSPGQAG 116 Query: 121 LSSLLPKG-KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167 +L+ +G + I+ + + I+P D++D++ V S Sbjct: 117 YLNLITRGDMTLYPLTIASKNLIDNYIQPGDYIDIMAVSSPRTNLSNTTSTLENFEGVRA 176 Query: 168 TVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPMQAKALVA 209 ++++ IRV+++ + E+ ST +E+ P L Sbjct: 177 SLLMRRIRVMSVGQSNTLAEKADQRATITSTIRPKVNISNENESTVVIEVNPDDLAKLSL 236 Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 AQ + + RS ++ SDV E++ Sbjct: 237 AQRTMYIEI-YRSQHYRQTPDADVSDVIKNYTGIVELR 273 >gi|228982437|ref|ZP_04142696.1| hypothetical protein bthur0002_55700 [Bacillus thuringiensis Bt407] gi|228776620|gb|EEM24928.1| hypothetical protein bthur0002_55700 [Bacillus thuringiensis Bt407] Length = 267 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 84/267 (31%), Gaps = 54/267 (20%) Query: 1 MKLTRL-MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK ++ + I G L AG T+ + V D+ Sbjct: 1 MKTKQVAITIAQMGAVILFAGGFYYF-------------TQKQMEPTTVWQFNRDIPANT 47 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 +T L P + V GF + +++ G ++ G+ +KLVD+ N Sbjct: 48 QITEGDLVKTTIPAQAVTKGF------ALSPKDIVGKYNNSKLVTGEYALKQKLVDKKNI 101 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVL 171 S+ R ++ I+ +GG +K D VD+V V + L Sbjct: 102 DPFESMDLTKYRKISLPITYIDGLGGNVKRGDKVDLVFVGEGEKAGEGSGKGFKYSKAFL 161 Query: 172 SNIRVIAI-------------------------DHNIDSDERVLVGSTATLELTPMQAKA 206 +I V + +I S ST TL +T QA+ Sbjct: 162 QDILVYNVTTDDGFRYTDRSEGVKGDEAGDMQDGKDIQSGGEGGKLSTVTLAVTLDQAEQ 221 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSED 233 + A + +V R D + Sbjct: 222 ISARLKSGNIRIVGR-FDDSQNYDTAG 247 >gi|188592031|ref|YP_001796629.1| flp pilus assembly cpab [Cupriavidus taiwanensis LMG 19424] gi|170938405|emb|CAP63392.1| putative Flp pilus assembly CpaB [Cupriavidus taiwanensis LMG 19424] Length = 316 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 90/243 (37%), Gaps = 27/243 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + + + V + V Q + V+++ G Sbjct: 1 MTSKQIRLLAIVLLGLAVLLALLAWQVGRQPAQ--PAASAGARPMHAVVVTTRPAEAGKP 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + L+ P + G DV + + G + V + P+ +L+ G Sbjct: 59 LDAEALKVEMLPID--PAGAYRDVAR------VTGQVPLVALGANVPVLESQLL----SG 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVI 177 L++ +P+G+RA + + VG ++P D+VDV +V +++ ++LS +RV+ Sbjct: 107 LAAQVPEGERAVAVSVDEVIGVGNQVQPGDYVDVFLVLRRDQQEIPDSQARMLLSRLRVL 166 Query: 178 AIDHNIDSD----------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 A + R TA L + Q L AQ +L L LR+ D Sbjct: 167 AYGVASVNRPQAVKPEQMMARQEGAKTAVLSVPLEQVSRLAMAQHSGRLMLALRNPQDEA 226 Query: 228 PSS 230 S Sbjct: 227 MPS 229 >gi|262275470|ref|ZP_06053280.1| flp pilus assembly protein RcpC/CpaB [Grimontia hollisae CIP 101886] gi|262220715|gb|EEY72030.1| flp pilus assembly protein RcpC/CpaB [Grimontia hollisae CIP 101886] Length = 263 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 92/266 (34%), Gaps = 24/266 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M I + V G+ I+ I V K + G + Sbjct: 1 MSQRVFFLIAFLSIAGGVLGLSGFFQSKNTTASNISNIS------IKVAQLKTPVTRGDI 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 VT + + + E + I + + G++ + + D + + + + Sbjct: 55 VTGDNIRYFRLRETEALEYGIVSDVVISP---VSGMVAKKDLTTSDYLSMSDFILPSDPA 111 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------------RKP 165 L +++ ++ I +G I D VDV+++ S + R Sbjct: 112 YLDTVIDDHMTPYSLTIERKDFIGSGISVGDRVDVIILTSDEQNIGDTSRSNHIESFRSL 171 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +V+ +L N+RV+AID + + T+EL Q +V A+ + + ++ S A Sbjct: 172 SVSPLLRNVRVLAIDDGKEKENEKEEILPLTIELNRDQVAKMVIARRIGIIEVIKSSNAS 231 Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKA 251 +D DV K + I+ Sbjct: 232 QQRLLGMTADTHDVLPNFKSVTEIRG 257 >gi|90412177|ref|ZP_01220183.1| hypothetical protein P3TCK_27809 [Photobacterium profundum 3TCK] gi|90326901|gb|EAS43286.1| hypothetical protein P3TCK_27809 [Photobacterium profundum 3TCK] Length = 284 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 36/278 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + I V + G +A L+S + E K+I V + LA G Sbjct: 1 MNSKIIFVIAFLAVLTGLYG-MADTLLSTTDTASTSATEEKEIKYITVWRATSPLARGQA 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++P+ L EE I+ L+ + + +G + E G G Sbjct: 60 LSPSSLTREQLTEEAALSLGINSDVTLKFEPT---TLMNMDVKQGALVFPELQTSPGEAG 116 Query: 121 LSSLLPKG-KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167 +L+ +G + I+ + + I+P D++D++ V S Sbjct: 117 YLNLITRGDMTLYPLTIASKNLIDNYIQPGDYIDIMAVSSPRTNLSNTTSTLENFEGVRA 176 Query: 168 TVVLSNIRVIAIDHNIDSDERVLV------------------GSTATLELTPMQAKALVA 209 ++++ IRV+++ + E+ ST +E+ P L Sbjct: 177 SLLMQRIRVMSVGQSNTLAEKSGQRSTTTSTIRPKVNISNENESTVVIEVNPDDLAKLSL 236 Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 AQ + + RS ++ SDV E++ Sbjct: 237 AQRTMYIEI-YRSQHYRQTPDADVSDVIKNYTGIVELR 273 >gi|73539230|ref|YP_299597.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134] gi|72122567|gb|AAZ64753.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134] Length = 318 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 25/218 (11%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 + V A V+++ + G + + L+ P E G +V Sbjct: 25 WQVGRQPEPPPVSRAAAAVPHPVVVTARAVEAGKPLPADALKVEMLPIE--PTGAYAEV- 81 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 + G + V I P+ +L+ GL++ +P+G+RA + + VG Sbjct: 82 -----TRVAGQVPLVNIGANVPVLESQLL----AGLAAQIPEGERAVAIAVDEVIGVGNQ 132 Query: 146 IKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSD----------ERVLVG 192 ++P D+VDV +V ++ ++L +RV+A ++ R Sbjct: 133 VQPGDYVDVFLVLRRDSQEIGASQARMLLPRLRVLAYGSGAVNEPQKQQPEQMMTRREGA 192 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 TA L + Q L AQ +L + LR+ D S Sbjct: 193 KTAVLSVPLEQVSKLAMAQHSGRLLMALRNPHDELIPS 230 >gi|104779899|ref|YP_606397.1| Flp pilus assembly protein CpaB [Pseudomonas entomophila L48] gi|95108886|emb|CAK13582.1| putative Flp pilus assembly protein CpaB [Pseudomonas entomophila L48] Length = 316 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 74/249 (29%), Gaps = 32/249 (12%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 P +++ + + + +T + + + V G Sbjct: 45 PAPTPVAVPAQPPEPPRSPIVVLRKAVPANVPLTEDDVLVERL--QVVPAGAFQQ----- 97 Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148 + ++ G P+ G + + G L+ ++ +RA + + G ++P Sbjct: 98 -LDQVLGRSSSRPLAAGSWLDDSSF--QAGGPLARMIRANERAVAVAVDDVIGAAGQLRP 154 Query: 149 NDHVDVVMVRSLSERKPTV--TVVLSNIRVIAIDHNIDSDERVLVG-------------- 192 D VDV++ P VVL +RV+++DH Sbjct: 155 GDFVDVLLFLREENNNPQSSAQVVLPALRVLSVDHQTGLANDGRPAQTAEEQKARRDQQA 214 Query: 193 ------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI 246 T L + A L+ A L L +RS + + + Q Sbjct: 215 LNSNATRTVGLAVPEALASRLMLAAQAGTLRLAVRSADEQLLARYWSGEDASPQLAAANR 274 Query: 247 QIIKAGVIV 255 + + + Sbjct: 275 DLYRFSQLS 283 >gi|297157611|gb|ADI07323.1| hypothetical protein SBI_04202 [Streptomyces bingchenggensis BCW-1] Length = 234 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 87/251 (34%), Gaps = 26/251 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ + L AG ++S + K ++ Sbjct: 1 MNSRQRRGVILLVLSVLCAGGAFAGVLS-----VIRDVESKVGPETTAYKLKSNVPAYQA 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + E ++ P+ + + D + ++ G + P+ KG ++ + +V+R Sbjct: 56 LDAGQFEKISMPKRWLPSTAVTD------LADVRGKIAVTPLRKGSLLQDDMIVERP--- 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIA 178 L G++ + I ++ V G I P V++ ++ P ++++ VI Sbjct: 107 ---ALKPGQQEIAIMIDAATGVAGKINPGSKVNIYATFEGRSQRDDPVSKIIVAGAEVID 163 Query: 179 IDHNI------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSS 231 + D R+ T L A+ + A+S A + L L + + S Sbjct: 164 VGKLTALEPDQDDTRRLDKAVPITFALDTGDAQRVAYAESFATHVRLALVAPGGDDTVSP 223 Query: 232 EDSDVWDVQEE 242 D + Sbjct: 224 RDRTYTLDGDR 234 >gi|119961714|ref|YP_948564.1| Flp pilus assembly protein [Arthrobacter aurescens TC1] gi|119948573|gb|ABM07484.1| putative Flp pilus assembly protein CpaB family [Arthrobacter aurescens TC1] Length = 269 Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 27/221 (12%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 + V+ + + AGI +L T + ++V+++ DL G +T + L Sbjct: 71 LAVALLLCVAAGIAVHQL------------TPASEQRVSVVVAARDLPTGTSLTESDLTS 118 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128 V P + G + N++ L G + P+ KG L+ GL + P G Sbjct: 119 VGVPPDLALSGAL------NSIGTLVGRQLASPLGKGQIPTESSLLGP---GLLTGAPVG 169 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAI-DHNIDSD 186 A + ++ S++ ++ P V VV+ + S + V+ + V+ Sbjct: 170 TAAVPLRMADPSSIQ-LLSPGQLVTVVLTAAGSYDESRQSQVLAGPVPVLWTSAQGGKPG 228 Query: 187 ERVLVGST---ATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 E + G T + P QA+ L A + KL VL S + Sbjct: 229 EWLGTGDTDGLVVVAADPQQAEKLAGASTQGKLFFVLVSPS 269 >gi|33593510|ref|NP_881154.1| putative secretory protein [Bordetella pertussis Tohama I] gi|33572866|emb|CAE42801.1| putative secretory protein [Bordetella pertussis Tohama I] gi|332382918|gb|AEE67765.1| putative secretory protein [Bordetella pertussis CS] Length = 281 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 98/249 (39%), Gaps = 14/249 (5%) Query: 1 MKLTRLMGIVVSG---VFALVAG-IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLA 56 M+ R + + FALVAG + A + ++ + + L++ DL Sbjct: 1 MRAARWRQGLRALGGYAFALVAGSLAAWAAREHIQRRVHDIEQQARVPMVASLVAALDLE 60 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G + ++ P+ + G + P+ LDG ++R P+ G+ ++ L Sbjct: 61 AGTPLHDELVAVRDMPQAWLPAGAL----LPDEAARLDGAVLRAPVKAGEALQAALLSYP 116 Query: 117 GNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 L+ L G+ A T+ + + +P D VD+ + + +R+ +L+ + Sbjct: 117 EQTPALTEQLEAGQGAITLPLQELPGLSAAARPGDLVDLYVSFTHRQRQ-LTMPLLAGSK 175 Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 V+A+D + ST TL + + LVAA+ L+ VLR + Sbjct: 176 VLALD----PADAQGGASTITLRASAREVARLVAARQEGTLTAVLRRAGAPAQGPARAFA 231 Query: 236 VWDVQEEGK 244 +E G Sbjct: 232 APSAREAGD 240 >gi|59711119|ref|YP_203895.1| CpaB family Flp pilus assembly protein [Vibrio fischeri ES114] gi|59479220|gb|AAW85007.1| Flp pilus assembly protein CpaB family [Vibrio fischeri ES114] Length = 270 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 92/234 (39%), Gaps = 19/234 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ + V + + G+ + + + P + V I+K DL G Sbjct: 1 MKSKIILVLAVIAISIGLYGMSQTSTTESPITEKVQEFDKRPEATVMVWIAKKDLMFGSP 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 V LE + I + N ++L LV+ IL+GD + + L+ G Sbjct: 61 VQRTDLEVQRISQTQADRFGIIHDVKFNFNKKL---LVKKDILQGDIVTSDMLLSPGQEG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----------KPTVT 168 L+ ++ +GK +++S + +GG I D VD+ + S + + Sbjct: 118 YLNLVISEGKVPFNLEVSNDAILGGAISVGDVVDIASISSSEQNLSNDASISNVQSLKMA 177 Query: 169 VVLSNIRVIAIDHNIDS----DERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 +L+ I V+ I + + LE++ + LV AQ +A+L + Sbjct: 178 PLLTQIMVLDIIQQEKPVRLNSKSTKTVTNLVLEVSNRELAKLVIAQRIAELEV 231 >gi|197335888|ref|YP_002155268.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11] gi|197317378|gb|ACH66825.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11] Length = 270 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 19/234 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ + V + + G+ + + + P + V I+K DL G + Sbjct: 1 MKSKIILVLAVIAISIGLYGMSQTSTTESPITEKVQEFDKLPEPTVMVWIAKKDLMFGSL 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 V LE + I + N ++L L++ IL+GD + + ++ G Sbjct: 61 VQRTDLEVQRISQTQADRFGIAHDVKFNFNKKL---LIKKDILQGDIVTSDMVLSPGQEG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----------KPTVT 168 L+ ++ +GK +++S + +GG I D VD+ + S + + Sbjct: 118 YLNLVISEGKVPFNLEVSNDAILGGAISVGDVVDIASISSSEQNLSNDASISNVQSLKMA 177 Query: 169 VVLSNIRVIAIDHNIDS----DERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 +L+ I V+ I + +T LE++ + LV AQ +A+L + Sbjct: 178 PLLTQIMVLDIIQQEKPVRLNSKSTKTVTTLVLEVSNRELAKLVIAQRIAELEV 231 >gi|33601079|ref|NP_888639.1| hypothetical protein BB2096 [Bordetella bronchiseptica RB50] gi|33575514|emb|CAE32592.1| putative exported protein [Bordetella bronchiseptica RB50] Length = 277 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 14/225 (6%) Query: 1 MKLTRLMGIVVSG---VFALVAG-IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLA 56 M+ R + + FALVAG + A + ++ + + L++ DL Sbjct: 1 MRAARWRQGLRALGGYAFALVAGSLAAWAAREHIQRRVHDIEQQARVPMVASLVAARDLE 60 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G + ++ P+ + G + P+ LDG ++R P+ G+ ++ L Sbjct: 61 AGTPLHDELVAVRDMPQAWLPAGAL----PPDEAARLDGAVLRAPVKAGEALQAALLSYP 116 Query: 117 GNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 L+ L G+ A T+ + + +P D VD+ + + +R+ +L+ + Sbjct: 117 EQTPALTEQLEAGQGAITLPLQELPGLSAAARPGDLVDLYVSFTHRQRQ-LTMPLLAGSK 175 Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 V+A+D + ST TL + + LVAA+ L+ VL Sbjct: 176 VLALD----PADAQGGASTITLRASAREVARLVAARQEGTLTAVL 216 >gi|256785519|ref|ZP_05523950.1| hypothetical protein SlivT_13601 [Streptomyces lividans TK24] gi|289769415|ref|ZP_06528793.1| flp pilus assembly protein CpaB [Streptomyces lividans TK24] gi|289699614|gb|EFD67043.1| flp pilus assembly protein CpaB [Streptomyces lividans TK24] Length = 235 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 85/249 (34%), Gaps = 30/249 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ +++S + AL A + +++ + + K D+ + Sbjct: 6 RRGIILLILSVLCALGAFAGVLSVIND--------VKSKVGPEVTAYRVKSDIEPYTELG 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 E V PE + + + D+ + + G + + G ++ + +VD Sbjct: 58 ATQFEKVEMPERWLSENAVTDLSR------VRGKIAVTTLKAGSLLQTDMIVDTP----- 106 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIAID 180 L G++ + I ++ V G I P V+V ++++ +VI + Sbjct: 107 -ALRPGQQEVAIMIDAATGVAGKITPGSTVNVYATFEGPREGDPDQSKIIVTGAKVIDVG 165 Query: 181 HNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSE 232 D T L+ + A+ + A+S A ++ L L + + Sbjct: 166 ELTSLEPDEDSRDREPTDAVPITFALSTIDAQRITYAESFARRVRLALVAPGGDTTVPDK 225 Query: 233 DSDVWDVQE 241 D ++ Sbjct: 226 DRTYELAKD 234 >gi|320008849|gb|ADW03699.1| Flp pilus assembly protein CpaB [Streptomyces flavogriseus ATCC 33331] Length = 234 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 91/250 (36%), Gaps = 26/250 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ + L A ++S + ++ K ++A Sbjct: 1 MNSRQRRGVILLLLSVLCAFAAFAGVLSVISD-----VNSKVGPEVDAYRLKDNVAPYTA 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++ E V+ P+ + + + ++ E+DG + + G ++ + +V Sbjct: 56 LSAKQFEKVSMPKRWLSENAVTEID------EVDGKIAVTELRAGSLMQSDMMVS----- 104 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRVIA 178 S L G++ + I ++ V G I+PND V++ P +++SN +V+ Sbjct: 105 -SPELRPGEQEIAIMIDAATGVAGKIRPNDKVNIYATFAAERDGEVPQSKIIVSNAKVLD 163 Query: 179 IDHNI------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSS 231 + D + T L + + + A+S A+ + L L + Sbjct: 164 VGELTALEPRKDDRNQAAEAVPITFALDTLDTQRVAYAESFAQHVRLALIAPGSDGVVRP 223 Query: 232 EDSDVWDVQE 241 D ++ Sbjct: 224 GDRTYTLDKD 233 >gi|266625537|ref|ZP_06118472.1| putative Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479] gi|288862557|gb|EFC94855.1| putative Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479] Length = 231 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 84/221 (38%), Gaps = 19/221 (8%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K I ++ D+ +G VT +++ V N+ + + + + G ++ Sbjct: 1 KKIEIVRVVKDIKIGDKVTGDMVRSVEVGSLNLPSEVMKN------KENVIGKYASADMV 54 Query: 104 KGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSL 160 GD I K+ D + L L K+A ++ + ++ + G +K D V V+ Sbjct: 55 PGDYIINSKVADEPAAENAYLYNLSGEKQAISVSVKSFATGLSGKLKSGDIVSVIAPDYQ 114 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSD--------ERVLVGSTATLELTPMQAKALVAAQS 212 + + + L + VIA+ D E + ST TL TP Q++ L + Sbjct: 115 KQGETVIPPELKYVEVIAVTAGSGYDANTGEEDPEEKELPSTVTLLATPEQSRILAMMEK 174 Query: 213 VAKLSLVL--RSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 L + L R + + + + E + +++ Sbjct: 175 DGNLHISLVYRGTKENAAKFIAEQEQALQELYPPETEAVES 215 >gi|313902408|ref|ZP_07835811.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM 13965] gi|313467339|gb|EFR62850.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM 13965] Length = 302 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 81/216 (37%), Gaps = 23/216 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + V+ + A +I + + + V+++ L + Sbjct: 4 MSWRAAASLGVALLAGTTAYLIYL----------------DATASLPVVVATRPLRAPLN 47 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 V +++ V P V + D + + G ++R + G+P+ +V G Sbjct: 48 VEADMVSVVPLPAAAVHPRAVGDPSR------VIGHVLRRDVEAGEPLLEADVVAGEGAG 101 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 LS+ L + ++A + + +GG ++P D VDV+ V +L N+ V+ + Sbjct: 102 LSAFLEEHQQAFFIPTRLEQGLGGAVEPGDRVDVIFVG-GEGPGAVARTLLENLPVLQVR 160 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 + +TP +A+ L A + ++ Sbjct: 161 DEEGRRYEDGRPLGVLVGVTPAEAERLAYALTYGRV 196 >gi|257791505|ref|YP_003182111.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|257475402|gb|ACV55722.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] Length = 243 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 18/197 (9%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 + I + +I+ ++ G ++P++L+ V P + I D Q+L Sbjct: 62 VQSEIATLRENTSSTVITTTAISQGTTISPDMLKVVDIPASFLNSEAIAD------TQDL 115 Query: 94 DGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 G + I + L L+S L G A ++ + S + G+IK ND+V Sbjct: 116 VGKIALYNIAANSQVTSGMLSAMDNAATLASSLQAGNVAISIAVDSESGLSGLIKQNDYV 175 Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212 D++ V++ N+RV A+D N+ V +T TLE+ P QA A+ AQS Sbjct: 176 DILGNG---------EVIVQNVRVAALDSNLS--GSVSQYATVTLEVAPTQATAIQEAQS 224 Query: 213 VAKLSLVLRSIADLNPS 229 L VLR + Sbjct: 225 ENPLRFVLRPAVERTAP 241 >gi|116694139|ref|YP_728350.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16] gi|113528638|emb|CAJ94985.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16] Length = 317 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 83/218 (38%), Gaps = 25/218 (11%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 + + V+++ + G + L+ P + G +V Sbjct: 25 WQVGRQPAQAPAASTSAKPLHAVVVTTQAVEAGKPLAAEALKVEMLPID--PTGAYSEVA 82 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 + + G + V + P+ +L+ GL++ + +G+RA + + VG Sbjct: 83 R------VTGQVPLVALGANVPVLESQLL----AGLATQVREGERAVAVSVDEVIGVGNQ 132 Query: 146 IKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAID-------HNIDSDE---RVLVG 192 ++P D+VDV +V ++ + ++LS +RV+A N ++ R Sbjct: 133 VQPGDYVDVFLVLRRDQQEIPESQARMLLSRLRVLAYGVASVNRPQNAKPEQMMARQEGA 192 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 TA L + Q L AQ +L L LR+ D S Sbjct: 193 KTAVLSVPLEQVSRLAMAQQSGRLLLALRNPQDEAMPS 230 >gi|254487761|ref|ZP_05100966.1| Flp pilus assembly protein CpaB [Roseobacter sp. GAI101] gi|214044630|gb|EEB85268.1| Flp pilus assembly protein CpaB [Roseobacter sp. GAI101] Length = 198 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 9/171 (5%) Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 E++G +V+V + I K+ + GL+S L +G RA T+ + +SS V G ++ Sbjct: 2 PQGEVNGDVVQVVARSFEAILAAKVTAPGEDTGLTSRLARGTRAFTIKVDVSSGVSGFLR 61 Query: 148 PNDHVDVVMVRS-------LSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLEL 199 P D VDV L ++ + +++IAID + + + T T+ + Sbjct: 62 PGDRVDVYWTGRITVGDSNLRNAGDVTKLIEAGVQLIAIDQSAGGEMNEANIAQTVTVAV 121 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 P Q AL AQS KLSL L D + + + D + E ++ Sbjct: 122 KPSQVAALAQAQSTGKLSLSLVGADDDTIAGAIEVDQRSLLGITNETVQVE 172 >gi|163856387|ref|YP_001630685.1| putative secreted protein [Bordetella petrii DSM 12804] gi|163260115|emb|CAP42416.1| putative secreted protein [Bordetella petrii] Length = 281 Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 90/244 (36%), Gaps = 12/244 (4%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 LTRL + V G + A + E+ E ++ L+ DL G + Sbjct: 9 LTRLRALGVYGFALAAGLLAAWAAREHIQARVREIEREAEVLAVDKLVVATDLPAGTRLQ 68 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGNGGL 121 L P V G P A ++ G ++ + +GD + L Sbjct: 69 AGHLAVRDIPVPWVASGSF----DPEAADQVIGAVLAADLRQGDALLDVHLAPAVAAPAL 124 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 S L+P G+RA T+ +A G+++ D +D+ + + + ++ +RV+A++ Sbjct: 125 SELVPAGRRAVTLPAEEINAAAGLLRAGDLIDLYVSFAHR-GQHLTAPLMQGVRVLAMES 183 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 D+ + TL+ + A LVAA+ L+ +LR D S Sbjct: 184 GADA------APSITLDASAQDAIKLVAARHGGTLTAMLRHRGDGAAPPVTASGDLAALM 237 Query: 242 EGKE 245 Sbjct: 238 GIDA 241 >gi|116052339|ref|YP_792650.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115587560|gb|ABJ13575.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 303 Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 23/199 (11%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + VL++ DL V+ + L V + + L G V V Sbjct: 51 EKLERKPVLVASRDLPALAVIGKDDLSVERLRTAPV--------GSYDRPEALLGKRVWV 102 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 + G + L G L+ + +RA + + GG + P D+VDV++ Sbjct: 103 AVPAGSILSAATL--EPGGPLARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRD 160 Query: 161 SERKPTV---TVVLSNIRVIAID----------HNIDSDERVLVGSTATLELTPMQAKAL 207 + +VL +RV+ + ++ TA L + L Sbjct: 161 ERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARL 220 Query: 208 VAAQSVAKLSLVLRSIADL 226 + A L L +RS + Sbjct: 221 MLASQAGSLRLAIRSKDEE 239 >gi|317403506|gb|EFV84009.1| flp pilus assembly protein CpaB [Achromobacter xylosoxidans C54] Length = 226 Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 69/210 (32%), Gaps = 24/210 (11%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVT-PNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 E PAK V+++ + G + +L+ + ++ Sbjct: 21 QASAPAEPPAKRYPVVVAAAAIPAGTRIDGARMLKVDQWQVAL--------SGSYSSPAP 72 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 L G RV I GDP+ L GL L G+RA + + G I P D V Sbjct: 73 LQGAYARVDIAAGDPLLPSMLAQ----GLGRQLKPGERAVAIAVDEVVGGGNRIAPGDLV 128 Query: 153 DVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDERVL---------VGSTATLELTP 201 DV + + ++ S +RV+A TA L + Sbjct: 129 DVFFLLEKGVEIQAGQARLLQSRVRVLAYGTASVDGPEDKGTLPGPPGQPARTAVLAVPV 188 Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 Q L+ A +L L LR + D + Sbjct: 189 EQVSELLLAGRSGRLQLALRPVGDDGGPDT 218 >gi|297568754|ref|YP_003690098.1| Flp pilus assembly protein CpaB [Desulfurivibrio alkaliphilus AHT2] gi|296924669|gb|ADH85479.1| Flp pilus assembly protein CpaB [Desulfurivibrio alkaliphilus AHT2] Length = 292 Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 77/201 (38%), Gaps = 21/201 (10%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 E A + ++++ L+ G +T P V ++++E+ Sbjct: 44 ALAKPEETAADWPRIVVAGQPLSRGEPITAA--AVQLVPARLVPPDSF------SSLEEV 95 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 V + G+P+ + L+ +L +RA + ++ + VGG + P DHVD Sbjct: 96 VERRPAVSLQIGEPLTKRHFL--PGSELAHVLDPDERAVAIVVNDAIGVGGFLAPGDHVD 153 Query: 154 VVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDERVLVGS--------TATLELTPM 202 V++ + +R+ ++L+ R++A + + + TA L + Sbjct: 154 VLLYLAADQRRRQPAQARILLARQRLLAYGQAPAAAKAGTQPARGAGRGSDTAVLAVRTE 213 Query: 203 QAKALVAAQSVAKLSLVLRSI 223 A L+ A V L L L Sbjct: 214 DAPKLLLAAQVGTLHLALHGP 234 >gi|149909548|ref|ZP_01898202.1| tungstate-binding protein precursor [Moritella sp. PE36] gi|149807453|gb|EDM67404.1| tungstate-binding protein precursor [Moritella sp. PE36] Length = 267 Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 101/275 (36%), Gaps = 26/275 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ I A+V G+ + +P +T+ I V + D+ G + Sbjct: 1 MKTKLIIAIAT---LAIVIGLYGLLTEAPPATETQITEIVVEENKIKVWFLRNDVKRGQL 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 V + PE I D N + G + + + E + + Sbjct: 58 VERSDFSIRQLPESEANALGIADESNMNFDK---GSVYNRELTVQSAVFPEYITATNDLE 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------------RKP 165 + +L + + + + +GG+I +VDV+ + S + Sbjct: 115 YVELVLAENRVPFVIKVDPDVIIGGVISHGSYVDVLALASGGSKISFNSDELSQPKFKSI 174 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTAT---LELTPMQAKALVAAQSVAKLSLVLRS 222 +V+ VL ++V+ I S R TAT LELT Q L A+ +A L V +S Sbjct: 175 SVSPVLIGVKVLTIQQGAMSGGRNNSDVTATVLVLELTRKQVAKLTVAKRIADLE-VHKS 233 Query: 223 IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 I N + +D DV + K I+ +A I Sbjct: 234 IGSYNAADLT-ADAGDVLADYKAIKEFRANKISIN 267 >gi|302553849|ref|ZP_07306191.1| flp pilus assembly protein CpaB [Streptomyces viridochromogenes DSM 40736] gi|302471467|gb|EFL34560.1| flp pilus assembly protein CpaB [Streptomyces viridochromogenes DSM 40736] Length = 235 Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 89/249 (35%), Gaps = 30/249 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ +++S V AL A + ++S + + K ++ + Sbjct: 6 RRGVILLLLSVVCALGAFAGVLSVISD--------VKSKVGPEVTAYRLKSEVPPYTTLR 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 E + PE + D + D ++E+ G + + G ++ + +V R Sbjct: 58 TGQFEKIKMPERWLSDNAVTD------LREIQGKIAVTTLRAGSLLQSDMIVRRP----- 106 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAID 180 L G++ + I ++ V G I P V+V ++++N +V+ + Sbjct: 107 -ALQPGQQEVAIMIDAATGVAGKITPGASVNVYATFEGAREGDPDQSKIIVTNAKVLDVG 165 Query: 181 -------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSE 232 + ++ G T L+ + A+ + A+S A ++ L L + Sbjct: 166 ELTALEPDESNRTQQPTDGVPITFALSALDAQRITYAESFAKRVRLALVAPGSDTTVPER 225 Query: 233 DSDVWDVQE 241 D ++ Sbjct: 226 DRTYELAKD 234 >gi|160941850|ref|ZP_02089177.1| hypothetical protein CLOBOL_06746 [Clostridium bolteae ATCC BAA-613] gi|158435347|gb|EDP13114.1| hypothetical protein CLOBOL_06746 [Clostridium bolteae ATCC BAA-613] Length = 278 Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 85/224 (37%), Gaps = 18/224 (8%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V GI+ + L + + ++ +++ + + G +T + ++ V N+ Sbjct: 9 VLGILCIVLSLAICFLATPLFNQAISEKTDIVRVQKAIKAGDEITKDKVQMVEVGGYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 + + D + + G +L GD + K+ + G + L L K+A ++ Sbjct: 69 ENVMKD------LGSVVGAYATADLLPGDYVLYSKISVQPPGADTYLYQLDGTKQAISVT 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVG-- 192 + ++ V G ++ D V ++ + + L ++VIA+ + D G Sbjct: 123 VKSFAAGVSGKLRSGDIVSILAPDYRKMGETVIPQELQYVQVIAVTASTGVDANTAGGDK 182 Query: 193 -------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 +T TL TP+Q K L ++ L L + Sbjct: 183 EKEKSLPATLTLLATPIQCKVLAELETEGNLHAALVYRGKAETA 226 >gi|160940635|ref|ZP_02087978.1| hypothetical protein CLOBOL_05529 [Clostridium bolteae ATCC BAA-613] gi|158436370|gb|EDP14137.1| hypothetical protein CLOBOL_05529 [Clostridium bolteae ATCC BAA-613] Length = 288 Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 95/258 (36%), Gaps = 33/258 (12%) Query: 1 MK-LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M+ R + ++S + A V +A+ V+T+ + + ++ L G Sbjct: 1 MRINNRFIYGIISILLAAVIAFVAI-----------PVVTKKTSSTLEIVRVVNPLERGQ 49 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-- 117 +T LE + N+ ++++ G ++ GD I K+ Sbjct: 50 QITAQDLELIEVGSYNLPASVAIR------LEDVTGTYAAASLMPGDYILPNKVSSSPLS 103 Query: 118 NGGLSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV--LSNI 174 + +P G A ++ ++++A+ ++ D + E+ V + L + Sbjct: 104 SDPALYSIPDGMVAISVTTQTLATALSDKLQSGDIIRFYHYNDEHEQLNPVEDIPELRYV 163 Query: 175 RVIAID----------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +V+++ ++ DE L +T T+ +P QA L ++ L + L S Sbjct: 164 KVLSVTDSQGLDIDYTQPLEEDEEKLQTATITVLASPEQAMLLTRYENEGILHVALISRG 223 Query: 225 DLNPSSSEDSDVWDVQEE 242 + + D+ E Sbjct: 224 NEALVTELLQRQTDILNE 241 >gi|290957849|ref|YP_003489031.1| hypothetical protein SCAB_33831 [Streptomyces scabiei 87.22] gi|260647375|emb|CBG70480.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 238 Score = 98.7 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 92/254 (36%), Gaps = 30/254 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+V+ + AL A ++S + + KGD+A Sbjct: 1 MNSRQRRGVVLLVLSALCALAAFAGVLS-----VIRDVNAKVGPEVTAYRLKGDIAPYKE 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + E ++ PE + + D + E+ G + + KG ++ + +VDR Sbjct: 56 LTADQFERISMPERWLSGTAVTD------LSEIRGKIAVNQLRKGSLLQSDMIVDRPE-- 107 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---TVTVVLSNIRVI 177 L G++ + I S+ V G I P V++ + T +++++ RVI Sbjct: 108 ----LEAGQQEIAILIDASTGVAGKINPGSRVNIYATFEEKDSDSKKDTSKLMVTDARVI 163 Query: 178 AID---------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLN 227 + + D T L A+ + A+S A+ + L L + Sbjct: 164 DVGKLTPLESGQSSSDRRRTATEAVPITFALDTADAQRVAFAESFAEHVRLALVGGGEAT 223 Query: 228 PSSSEDSDVWDVQE 241 +D ++ Sbjct: 224 VVVPDDRSYTLDED 237 >gi|313106824|ref|ZP_07793036.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] gi|310879538|gb|EFQ38132.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] Length = 299 Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 23/199 (11%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + VL++ DL V+ + L V + + L G V V Sbjct: 47 EKLERKPVLVASRDLPALAVIGKDDLSVERLRTAPV--------GSYDRPEALLGKRVWV 98 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 + G + L G L+ + +RA + + GG + P D+VDV++ Sbjct: 99 AVPAGSILSAATL--EPGGPLARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRD 156 Query: 161 SERKPTV---TVVLSNIRVIAID----------HNIDSDERVLVGSTATLELTPMQAKAL 207 + +VL +RV+ + ++ TA L + L Sbjct: 157 ERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARL 216 Query: 208 VAAQSVAKLSLVLRSIADL 226 + A L L +RS + Sbjct: 217 MLASQAGSLRLAIRSKDEE 235 >gi|317122041|ref|YP_004102044.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM 12885] gi|315592021|gb|ADU51317.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM 12885] Length = 284 Score = 98.7 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 73/191 (38%), Gaps = 7/191 (3%) Query: 42 PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101 + V+++ L + + P ++ P V + D + G ++R Sbjct: 29 ATASLPVVVATQALQAPLKIEPGMVAVSHVPAAAVHPEAVSDPA------AVVGRVLRRD 82 Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 + G+P+ + GLS L +G++A + + +GG ++P D VDV+ V Sbjct: 83 VEAGEPLLAADVAAGQGAGLSLYLEEGQQAFFIPARLEQGLGGAVEPGDRVDVIFVG-GE 141 Query: 162 ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 +L N+ V+ + + ++ QA+ L A + ++ L L Sbjct: 142 GPGAVARTLLENLPVLQVRDEEGRRWEEGRPMGVLVAVSRDQAERLAYALTYGRVFLALA 201 Query: 222 SIADLNPSSSE 232 A + S+ Sbjct: 202 PAAARSGGSAG 212 >gi|329935283|ref|ZP_08285249.1| hypothetical protein SGM_6766 [Streptomyces griseoaurantiacus M045] gi|329305106|gb|EGG48965.1| hypothetical protein SGM_6766 [Streptomyces griseoaurantiacus M045] Length = 237 Score = 98.3 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 87/253 (34%), Gaps = 29/253 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ + AL A ++S + + + D+A Sbjct: 1 MNSRQRRGVILLVLSALCALGAFAGVLS-----VIRDVNSKVGPEVTAYRLRNDIAPYKE 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++ + + V+ PE + + D+ + + G + + KG ++ + +V R Sbjct: 56 LSADQFQRVSMPERWLPRTAVTDLAR------IRGKIAVTRLEKGSLLQSDMIVARP--- 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIA 178 L G++ + I ++ V G I P V++ + K V++ N RV+ Sbjct: 107 ---ALAAGQQEIAIMIDAATGVAGKIDPGSRVNIYATFKAENDKGKDQSKVIVENARVLD 163 Query: 179 IDHNI---------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNP 228 + + T L A+ + A+S A+ + L L + Sbjct: 164 VGKITALDPDQSSDERRRSATQAVPITFALGTADAQRVAYAESFAEHVRLALVAGGSRQQ 223 Query: 229 SSSEDSDVWDVQE 241 D ++ Sbjct: 224 VPPGDRTYTLDED 236 >gi|302542852|ref|ZP_07295194.1| flp pilus assembly protein CpaB [Streptomyces hygroscopicus ATCC 53653] gi|302460470|gb|EFL23563.1| flp pilus assembly protein CpaB [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 98.3 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 85/250 (34%), Gaps = 26/250 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ + L AG ++S + KG++ Sbjct: 1 MNSRQRRGVILLVLSVLCAGGAFAGVLS-----VVNDVESKVGPETTAYKLKGNVDAYEA 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + E V+ PE V + D + E+ G + + +G ++ + + +R Sbjct: 56 LDAGDFEKVSMPERWVPSTAVTD------LSEVRGRIAATRLSQGSLLQTDMVANRP--- 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIA 178 L G++ + I ++ V G I P V++ + +++ + VI Sbjct: 107 ---ALKAGQQEIAIMIDAATGVAGKITPGAKVNIYATFEGKAQGEASVSKLIVDDAEVID 163 Query: 179 IDH------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSS 231 + + D + RV T L A+ + A+S A + L L P S Sbjct: 164 VGKLSALKPDEDDERRVDQAVPITFALDTKDAQRVAYAESFASHVRLALIGPGADAPVSP 223 Query: 232 EDSDVWDVQE 241 D + Sbjct: 224 RDRTYTLGGD 233 >gi|139438675|ref|ZP_01772159.1| Hypothetical protein COLAER_01160 [Collinsella aerofaciens ATCC 25986] gi|133775755|gb|EBA39575.1| Hypothetical protein COLAER_01160 [Collinsella aerofaciens ATCC 25986] Length = 224 Score = 98.3 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 20/215 (9%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK----FINVLISKGDLAVGMVVTPN 64 I +S V ++A ++ M S Q E+V E AK + V ++ D+ VG + Sbjct: 12 IAISLVAGVLAALLCMVYGSSIRSQAEQVQAETLAKYGGDRVEVCVAARDIDVGETLDET 71 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 + + + + + ++++ G + I K I V Sbjct: 72 NVITQEWLTSLLPRDAVTE------LRQVRGDVTTSRIPKNAVICN---VYTKAESHKLE 122 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184 +PKGK A ++ + +VGG +VDV + + + V+ Sbjct: 123 VPKGKVAVSVAVDAEHSVGGATGVGSYVDVYVQKDGVTDRLCGAYVID-------TSEDS 175 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 R TL P K L+ A +SL Sbjct: 176 GATREGKIEWVTLAADPEDVKELLGASGKGTVSLT 210 >gi|333024721|ref|ZP_08452785.1| putative flp pilus assembly protein CpaB [Streptomyces sp. Tu6071] gi|332744573|gb|EGJ75014.1| putative flp pilus assembly protein CpaB [Streptomyces sp. Tu6071] Length = 236 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 90/243 (37%), Gaps = 27/243 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+V+ + A+ A I + ++ +V E A K D+A Sbjct: 1 MNSRQRRGVVLMVLSAVCALIALVGVLGVVRNVNSKVGDEKTA-----YRLKDDIAPYKS 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + E V+ PE + D + + L G + + KG ++ + +V+R Sbjct: 56 LDASQFEKVSVPERWLPDTAVTR------LGALRGKIAVTTLHKGSLLQDDMIVNRP--- 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIA 178 L G++ + I ++ V G I P V++ +K +++ +V+ Sbjct: 107 ---ALRAGEQEIAIMIDAATGVAGKITPGSSVNIYATFKGQNENQKDESRLIVERAQVLD 163 Query: 179 IDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSS 230 + D+ R T L A+ + A+S A + L L + P++ Sbjct: 164 VGKLTPFDQNNDDNRNRSTEAVPITFGLGTTDAQRVAYAESFATHVRLALVGAGEQPPAA 223 Query: 231 SED 233 + Sbjct: 224 AGP 226 >gi|56460013|ref|YP_155294.1| Flp pilus assembly protein CpaB [Idiomarina loihiensis L2TR] gi|56179023|gb|AAV81745.1| Flp pilus assembly protein CpaB [Idiomarina loihiensis L2TR] Length = 235 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 82/212 (38%), Gaps = 14/212 (6%) Query: 1 MKLTR--LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58 MK + ++ S + ++V + + + + + + N V++ DL VG Sbjct: 1 MKKKAKWIFAVIFSSIISMVTIFLINQYLQQETSRRLQEASGNADS---VVVFSKDLNVG 57 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 ++ + L +P E + + + + +A + G +R + G+P+ L + N Sbjct: 58 DILEVSDLLVRKYPHELINEHWYLE----SAANLIIGRKLRSSVKSGEPVSERVLSNNQN 113 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 GLS +LP G A T+ ++K D VD+V V E V I V Sbjct: 114 NGLSEVLPNGYYAITVTTDNLGHHNALLKVGDLVDIVFVGESFENSRQ-YVSFEEIEVFD 172 Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAA 210 I + + TL + P + A A Sbjct: 173 I----HGLQEGYGSYSLTLLVEPEKVAAFTRA 200 >gi|167845918|ref|ZP_02471426.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei B7210] Length = 207 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 71/212 (33%), Gaps = 26/212 (12%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + A++ GI A L + V+++ L G + + L Sbjct: 8 IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P G + + G + I P+ +L+ GL+ + Sbjct: 68 KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177 G+RA + + ++AVG ++P + VDV + + ++LS +RV+ Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175 Query: 178 AIDHNIDSDERV-----LVGSTATLELTPMQA 204 + + TA L + Q Sbjct: 176 SFGDATVERDGTPGPTGAGARTAVLAVPTAQV 207 >gi|326390773|ref|ZP_08212326.1| SAF domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993167|gb|EGD51606.1| SAF domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 212 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 74/227 (32%), Gaps = 32/227 (14%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + + I +S + A + K I V+ + D+ G + Sbjct: 4 KKKAILIALSLILAGGLSFFQYQYFKSM---------AESDKKIQVIAAVSDIKSGEKID 54 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + + + +V I G + + Sbjct: 55 ------TKLGIKEIPQSAYVKEMYLANEKATG--YAKVDIAAGSYVLKSMVSHEEV---- 102 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI--- 179 +L + R T+ ++++S++ G IKP D VD+ V + +V +++ + Sbjct: 103 PVLKEDMRRVTIGVNLTSSLAGKIKPGDFVDIGWVPKDEAKDGASKIVAEKVQIYDVVNK 162 Query: 180 --------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 D N D+ L+ + TL +TP QA + ++ L L Sbjct: 163 SGEDVRKADKNNQYDKESLIPAAVTLIVTPEQAVIIKEYEAKGSLFL 209 >gi|302388996|ref|YP_003824817.1| SAF domain protein [Thermosediminibacter oceani DSM 16646] gi|302199624|gb|ADL07194.1| SAF domain protein [Thermosediminibacter oceani DSM 16646] Length = 214 Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 33/229 (14%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + + IV+S + A + R + I V+++ D+ G +T Sbjct: 5 KRKTVLIVISLLLATGLTFLQYRYFKSM---------AESDRKIQVVVAAADIEAGEDIT 55 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + P+ G E +V I G I E + Sbjct: 56 -GRIGLKTIPQSAYVKGMYL-------PNEKVSGYAKVNISAGSYILKEMVSTEKV---- 103 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 ++ G R T+ ++++S++ G I+P D VDV V E+ V+ +++ + + Sbjct: 104 PVVENGMRRVTIGVNLTSSLAGKIRPGDVVDVGWVPKEQEKGAGSKVIAQKVQIYDVVNK 163 Query: 183 IDSDERVLV------------GSTATLELTPMQAKALVAAQSVAKLSLV 219 + D S TL +TP QA + + + L LV Sbjct: 164 MGEDTTKKGDKKNQYEKDMLIPSAVTLIVTPEQAVMIKYHEVIGSLFLV 212 >gi|296391004|ref|ZP_06880479.1| Flp pilus assembly protein CpaB [Pseudomonas aeruginosa PAb1] Length = 303 Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 23/199 (11%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + VL++ DL V+ + L V + + L G V V Sbjct: 51 EKLERKPVLVASRDLPALAVIGKDDLSVELLRTAPV--------GSYDRPEALLGKRVWV 102 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 + G + L G L+ + +RA + + GG + P D+VDV++ Sbjct: 103 AVPAGSILSAATL--EPGGPLARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRD 160 Query: 161 SERKPTV---TVVLSNIRVIAID----------HNIDSDERVLVGSTATLELTPMQAKAL 207 + +VL +RV+ + ++ TA L + L Sbjct: 161 ERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARL 220 Query: 208 VAAQSVAKLSLVLRSIADL 226 + A L L +RS + Sbjct: 221 MLASQAGSLRLAIRSKDEE 239 >gi|198284414|ref|YP_002220735.1| Flp pilus assembly protein CpaB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667886|ref|YP_002427082.1| hypothetical protein AFE_2705 [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248935|gb|ACH84528.1| Flp pilus assembly protein CpaB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520099|gb|ACK80685.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 323 Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 52/279 (18%), Positives = 104/279 (37%), Gaps = 43/279 (15%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPH---HVQTEEVITENPAKFINVLISKGDLAV 57 M T + I + + A+ G+ A + P +T + P + V+++ L+ Sbjct: 1 MGNTAKIVIAILVLLAIALGVSAYLVSQPSPVVQSKTSAAAPQQPTAGVAVVVAAKTLSA 60 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G + P+ ++ + +PE G + + G + +V I G P+ L+ Sbjct: 61 GFPIPPDGVKVLHYPE--FPAGAFHETA------HVVGKVPQVNIGMGAPVMSSNLL--- 109 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVL 171 GL++ +P+G A +D++ + AVG ++P D+VDV + + ++L Sbjct: 110 -SGLATQVPEGDVAMAIDVNKAIAVGDHLQPGDYVDVFTTLAGDQMTMHGGWPTQSRLLL 168 Query: 172 SNIRVIAIDHNI----------------------DSDERVLVGSTATLELTPMQAKALVA 209 +++RV+A+ + ST L++ A L Sbjct: 169 ADLRVLAVGPQTVVRHVAQGEPSAFGPAAGSAGSSNQPPREPPSTVVLQVPVASAATLAL 228 Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQI 248 A L L LR+ D + E+ + Sbjct: 229 ASGQGHLLLALRNPKDHTLPDTGAFPTPSPALPPAELPV 267 >gi|70734200|ref|YP_257840.1| hypothetical protein PFL_0698 [Pseudomonas fluorescens Pf-5] gi|68348499|gb|AAY96105.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 311 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 81/268 (30%), Gaps = 43/268 (16%) Query: 1 MKLTRLMGIV-VSGVFALVAGIIAMRLVSPHHVQT-----------EEVITENPAKFINV 48 M MG+ + V A+ G + L + V Sbjct: 1 MNSRLTMGLAGLLLVGAVFFGYWGLVLSRKPEPAPPVQPVAPSVVEPTTTSAEDQTRQPV 60 Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ D+ + + + L G + +A+ + G + G + Sbjct: 61 VVLVRDVPPFVPLAADDLALEKL--RTAPAGSL------SAISQAVGRTPWRQLNAGTWL 112 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-- 166 + G L+ ++ +RA + + G + P D+VDVV+ P Sbjct: 113 NEQSFS--TGGALARMIHSDERALAVAVDEVIGAAGQLSPGDYVDVVLFLRQDTSNPQQS 170 Query: 167 VTVVLSNIRVIAIDHN-------------------IDSDERVLVGSTATLELTPMQAKAL 207 + + +RV+A+ + D+R L T L + L Sbjct: 171 AQIAVPAMRVLAVGEQLGLANDGQPASPGLSNEEKLKQDQRRLNARTVVLAVPEQLLSRL 230 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSD 235 + A V L L +RS + + + Sbjct: 231 MLATQVGVLRLAVRSSEEQRLAHYWAGN 258 >gi|51891526|ref|YP_074217.1| hypothetical protein STH388 [Symbiobacterium thermophilum IAM 14863] gi|51855215|dbj|BAD39373.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 278 Score = 97.5 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 49/271 (18%), Positives = 95/271 (35%), Gaps = 46/271 (16%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + +V + V AL+A +R + + VL ++ V P+ + Sbjct: 8 LALVGAFVCALLAAWFNIRFLEMQQ------------ERFTVLTVVREVPPYTPVGPDAV 55 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 ++ A P E+V I D L+G R ++ G +R LV G L++ L Sbjct: 56 QFAAVPRESVPADAITDPS------ALEGRYTRALLIPGTILREAHLVPAGGSSLAARLA 109 Query: 127 ----KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS------------ERKPTVTVV 170 RA + + ++ V G ++ D VD+++ + R V+ Sbjct: 110 AAASTDVRAMALRVDEATGVAGTLQEGDPVDILVAINADVTEAQERGEGRPARGTLARVI 169 Query: 171 LSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + V+ + + S L++TP A+ + A + + L L Sbjct: 170 AQRVPVLHV-----QRDEAGGPSAVVLQVTPRTAEEIAFAHANGMIWL-------LTSPY 217 Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261 + + +EI + G+ GE Sbjct: 218 TGPDEPVATTGVDREIFFERYGIGQRDTGEA 248 >gi|282865299|ref|ZP_06274351.1| Flp pilus assembly protein CpaB [Streptomyces sp. ACTE] gi|282559772|gb|EFB65322.1| Flp pilus assembly protein CpaB [Streptomyces sp. ACTE] Length = 237 Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 86/254 (33%), Gaps = 27/254 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ + L A ++S + + K D+A Sbjct: 1 MNSRQRRGVILLLLSVLCAFGAFAGVLSVISD-----VNAKVGPEVAAYQVKTDVAPYTT 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + P E V P+ + + D+ ++G + + G ++ + LV R Sbjct: 56 LEPGQFEKVTMPKRWLSRNAVTDLAV------INGKIAVTRLHAGSLLQDDMLVKRP--- 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIA 178 + G++ + I ++ V G I+P + V++ K T V++ N +VI Sbjct: 107 ---RVENGEQEIAIMIDAATGVAGKIRPGNLVNIFATFAGENEGEKATSRVIVPNAKVID 163 Query: 179 IDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSS 230 + + T L A+ + A+S A+ + L L Sbjct: 164 VGELTALEPKKDQRGSGLTEAVPITFALNTTDAQRVAYAESFAEHVRLALLPENSPTTLR 223 Query: 231 SEDSDVWDVQEEGK 244 + +++ K Sbjct: 224 PGEGSYSLDEDKNK 237 >gi|254762576|ref|ZP_05214416.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Australia 94] Length = 201 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 25/196 (12%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ V A VAGI EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAVGLAAATVAGIYGYNHF----------AVENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDSETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD 186 +RV A + D Sbjct: 166 FQRVRVTAAKDSNTED 181 >gi|254239025|ref|ZP_04932348.1| hypothetical protein PACG_05202 [Pseudomonas aeruginosa C3719] gi|126170956|gb|EAZ56467.1| hypothetical protein PACG_05202 [Pseudomonas aeruginosa C3719] Length = 303 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 23/212 (10%) Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87 S + + VL++ DL V+ + L V Sbjct: 38 SVAPASATVDASLEKLERKPVLVASRDLPALAVIGKDDLSVELLRTAPV--------GSY 89 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 + + L G V V + G + L G L+ + +RA + + GG + Sbjct: 90 DRPEALLGKRVWVAVPAGSILSAATL--EPGGPLARTIRPDERAMAIAVDEVVGGGGFVL 147 Query: 148 PNDHVDVVMVRSLSERKPTV---TVVLSNIRVIAID----------HNIDSDERVLVGST 194 P D+VDV++ + +VL +RV+ + ++ T Sbjct: 148 PGDYVDVMLFVRDERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRT 207 Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 A L + L+ A L L +RS + Sbjct: 208 AVLAVPEDGVARLMLASQAGSLRLAIRSKDEE 239 >gi|218893397|ref|YP_002442266.1| RcpC [Pseudomonas aeruginosa LESB58] gi|218773625|emb|CAW29439.1| RcpC [Pseudomonas aeruginosa LESB58] Length = 303 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 23/212 (10%) Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87 S + + VL++ DL V+ + L V Sbjct: 38 SVAPASATVDASLEKLERKPVLVASRDLPALAVIGKDDLSVELLRTAPV--------GSY 89 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 + + L G V V + G + L G L+ + +RA + + GG + Sbjct: 90 DRPEALLGKRVWVAVPAGSILSAATL--EPGGPLARTIRPDERAMAIAVDEVVGGGGFVL 147 Query: 148 PNDHVDVVMVRSLSERKPTV---TVVLSNIRVIAID----------HNIDSDERVLVGST 194 P D+VDV++ + +VL +RV+ + ++ T Sbjct: 148 PGDYVDVMLFVRDERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRT 207 Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 A L + L+ A L L +RS + Sbjct: 208 AVLAVPEDGVARLMLASQAGSLRLAIRSKDEE 239 >gi|107100111|ref|ZP_01364029.1| hypothetical protein PaerPA_01001132 [Pseudomonas aeruginosa PACS2] gi|254244884|ref|ZP_04938206.1| hypothetical protein PA2G_05757 [Pseudomonas aeruginosa 2192] gi|126198262|gb|EAZ62325.1| hypothetical protein PA2G_05757 [Pseudomonas aeruginosa 2192] Length = 303 Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 23/212 (10%) Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87 S + + VL++ DL V+ + L V Sbjct: 38 SVAPASATVDASLEKLERKPVLVASRDLPALAVIGKDDLSVELLRTAPV--------GSY 89 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 + + L G V V + G + L G L+ + +RA + + GG + Sbjct: 90 DRPEALLGKRVWVAVPAGSILSAAAL--EPGGPLARTIRPDERAMAIAVDEVVGGGGFVL 147 Query: 148 PNDHVDVVMVRSLSERKPTV---TVVLSNIRVIAID----------HNIDSDERVLVGST 194 P D+VDV++ + +VL +RV+ + ++ T Sbjct: 148 PGDYVDVMLFVRDERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRT 207 Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 A L + L+ A L L +RS + Sbjct: 208 AVLAVPEDGVARLMLASQAGSLRLAIRSKDEE 239 >gi|15599501|ref|NP_252995.1| RcpC [Pseudomonas aeruginosa PAO1] gi|9950527|gb|AAG07693.1|AE004846_10 RcpC [Pseudomonas aeruginosa PAO1] Length = 303 Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 23/212 (10%) Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87 S + + VL++ DL V+ + L V Sbjct: 38 SVAPASATVDASLEKLERKPVLVASRDLPALAVIGRDDLSVELLRTAPV--------GSY 89 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 + + L G V V + G + L G L+ + +RA + + GG + Sbjct: 90 DRPEALLGKRVWVAVPAGSILSAATL--EPGGPLARTIRPDERAMAIAVDEVVGGGGFVL 147 Query: 148 PNDHVDVVMVRSLSERKPTV---TVVLSNIRVIAID----------HNIDSDERVLVGST 194 P D+VDV++ + +VL +RV+ + ++ T Sbjct: 148 PGDYVDVMLFVRDERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRT 207 Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 A L + L+ A L L +RS + Sbjct: 208 AVLAVPEDGVARLMLASQAGSLRLAIRSKDEE 239 >gi|170720035|ref|YP_001747723.1| Flp pilus assembly protein CpaB [Pseudomonas putida W619] gi|169758038|gb|ACA71354.1| Flp pilus assembly protein CpaB [Pseudomonas putida W619] Length = 315 Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 66/211 (31%), Gaps = 33/211 (15%) Query: 42 PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101 + +++ + L +T + + V G V + G P Sbjct: 57 EPQRFPIVVLRKALPANTPLTAEDVLLERL--QVVPAGAFQQVD------HVIGRSSARP 108 Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 + G + + G L+ ++ +RA + + G + P D VDV++ Sbjct: 109 LAAGSWLDESSF--QPGGPLARMIRAHERAVAVGVDEVVGAAGQLYPGDFVDVLLYLREE 166 Query: 162 ERKPTV--TVVLSNIRVIAIDHNIDSDERVLVG---------------------STATLE 198 P VVL +RV+++ + T L Sbjct: 167 ANNPQSSAQVVLPALRVLSVGEQMGVTNDGRPALTAEELKARREQATPGNLASTRTVVLA 226 Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 + A L+ A V L L +RS A+ + Sbjct: 227 VPEALASRLMLAAQVGTLRLAVRSAAEQRLA 257 >gi|72162670|ref|YP_290327.1| hypothetical protein Tfu_2271 [Thermobifida fusca YX] gi|71916402|gb|AAZ56304.1| hypothetical protein Tfu_2271 [Thermobifida fusca YX] Length = 258 Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 20/232 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ V A A + + +VS + E+ T VL D+ Sbjct: 1 MNPRQRRGVLLMIVAAFGAIAVFLTIVSYVNTLNRELGTYR-----TVLRLTQDVDPYQP 55 Query: 61 VTPNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGV--LVRVPILKGDPIRLEKLVDRG 117 +T +++E P + + F+ D+ + G + + G ++ ++ Sbjct: 56 ITEDMVEPYEVPAKFFDEDLFLSDLASADEALSQPGSEPVSATFLHAGTLLQKSMVIP-- 113 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRV 176 + L G+R + I+ + V G + VDV +E+ P + VL+N+ V Sbjct: 114 ----APALENGEREIAIMINAETGVAGKVSRQSRVDVYASFQANEQSPACAIRVLTNVEV 169 Query: 177 IAID----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSI 223 + + T LTP QA L A+S A K+ L L S Sbjct: 170 LDVGDIGSQIDAQTGGTNTVVPVTFRLTPQQALQLTYAESFASKVRLALVSA 221 >gi|269126095|ref|YP_003299465.1| Flp pilus assembly protein CpaB [Thermomonospora curvata DSM 43183] gi|268311053|gb|ACY97427.1| Flp pilus assembly protein CpaB [Thermomonospora curvata DSM 43183] Length = 245 Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 25/221 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RL+ IVV+ A + ++ V + +NVL++ + G Sbjct: 1 MN-RRLITIVVAVALAGLGSLMVYGYVHGADERALRGQRA-----VNVLVAAKAIPAGTA 54 Query: 61 VT----PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 +T FP +V D + + ++ ++ P+ G+ IR LV Sbjct: 55 ITRLVADGYAVTRKFPASSVPDDVLSRIEDVDSD-----MVTGSPVRPGELIRKPLLV-P 108 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-------RSLSERKPTVTV 169 + +P+GK A T++++ V G + P V V + + Sbjct: 109 RGSSQTFTVPEGKIALTVELTDPQRVAGHVVPGSKVAVFLTRRILDSNGRPRGELTETRL 168 Query: 170 VLSNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALV 208 ++S I V+ I + S TL +T QA+ LV Sbjct: 169 LMSGIDVLWIGPAPKDKSAAKTEGSSLVTLAVTQRQAEKLV 209 >gi|167894494|ref|ZP_02481896.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei 7894] Length = 204 Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 26/208 (12%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + A++ GI A L + V+++ L G + + L Sbjct: 8 IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P G + + G + I P+ +L+ GL+ + Sbjct: 68 KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177 G+RA + + ++AVG ++P + VDV + + ++LS +RV+ Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175 Query: 178 AIDHNIDSDERV-----LVGSTATLELT 200 + + TA L + Sbjct: 176 SFGDATVERDGTPGPTGAGARTAVLAVP 203 >gi|77456877|ref|YP_346382.1| Flp pilus assembly CpaB [Pseudomonas fluorescens Pf0-1] gi|77380880|gb|ABA72393.1| putative Flp pilus assembly protein [Pseudomonas fluorescens Pf0-1] Length = 312 Score = 95.6 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 31/225 (13%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 + V++ D+A + +T + G + ++ Sbjct: 43 TPVDTPAPVEDPTRQPVVVLVRDIAPFVTLTAADVTVEKL--RTAPAGSLA------SVD 94 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 ++ G + G + E L+ ++ G+RA + + GG + P D+ Sbjct: 95 QVIGRTPWRALSAGTWLTQESF--EAGSPLARMIRPGERALAVAVDEVINAGGQLAPGDY 152 Query: 152 VDVVMVRSLSER--KPTVTVVLSNIRVIAIDHNI-------------------DSDERVL 190 VDV++ E +PT +V+ +RV+ + + ++ Sbjct: 153 VDVLLFLRKDENNPQPTAQLVVPAVRVLGVGSQMGLTNSGQPASPAHSEEEKLKQEQLRA 212 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 + L + L+ A S L L +RS + + D Sbjct: 213 AARSVVLAVPEPLLNRLMLASSAGVLRLAVRSADEQQLARYWAGD 257 >gi|320101691|ref|YP_004177282.1| Flp pilus assembly protein CpaB [Isosphaera pallida ATCC 43644] gi|319748973|gb|ADV60733.1| Flp pilus assembly protein CpaB [Isosphaera pallida ATCC 43644] Length = 436 Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 8/194 (4%) Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 +TP + + F D I KG+ I + L D Sbjct: 137 DTLTPEQRAELERRMRELPV-FFDRAGLQRLADAKSPYWASQTIGKGEIITRDMLGDPAT 195 Query: 119 -GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 G+ + + G R ++ ++ + GG + P ++VDV V + + T ++L N++V+ Sbjct: 196 IPGVYTNVRPGYRGISIKVTPETGGGGHVLPGNYVDVGAVYT---NQRTAKILLQNVKVL 252 Query: 178 AIDHNIDSDERVLV--GSTATLELTPMQAKALVAA-QSVAKLSLVLRSIADLNPSSSEDS 234 A+ I D + T LEL P +A L A L L++R D S + Sbjct: 253 AVGEAIKPDPKKAAMNAQTVVLELKPEEANLLQVAVGQRGTLRLLIRGNKDDQLLSEDKL 312 Query: 235 DVWDVQEEGKEIQI 248 +V + E + + + Sbjct: 313 EVVYGESEAERLDL 326 >gi|239979686|ref|ZP_04702210.1| hypothetical protein SalbJ_09627 [Streptomyces albus J1074] Length = 235 Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 87/251 (34%), Gaps = 27/251 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ + L A ++S + + K D+A Sbjct: 1 MNARQRRGVLLLLLSVLCAVGAFAGVLS-----VVRDVNAKVGPEVPAYRLKTDVAPYKE 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++ + E V+ PE + + D ++++ G + + +G ++ + +V R Sbjct: 56 LSADQFEKVSMPERWRSENAVTD------LRQIRGKIAVTTLRQGSLLQTDMIVARPE-- 107 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIA 178 + G++ + I ++ V G I P V++ K +++ N RVI Sbjct: 108 ----VRPGEQEIAIMIDAATGVAGKITPGSDVNIYATFKAENDGEKDQSRIIVENARVID 163 Query: 179 ID-------HNIDSDERVLVGSTATLELTPMQAKALVAAQS-VAKLSLVLRSIADLNPSS 230 + D + + T L+ A+ + A+S A + L L Sbjct: 164 VGKLTALEPDQDDRRRQPVDAVPITFALSAADAQRVAYAESFAAHVRLALVGPGSDEGLR 223 Query: 231 SEDSDVWDVQE 241 D ++ Sbjct: 224 RGDRTYTLDED 234 >gi|226309723|ref|YP_002769617.1| hypothetical protein BBR47_01360 [Brevibacillus brevis NBRC 100599] gi|226092671|dbj|BAH41113.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 242 Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 80/246 (32%), Gaps = 26/246 (10%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + ++ +FA G+ ++ PH V ++ + + G ++ + Sbjct: 6 LRLLAILLFATCIGVATYIILKPHQVTYIQLRSTVEKES------------GQLLEARDM 53 Query: 67 EWVAFPEENVFDGFIDDVHQPNAM-------QELDGVLVRVPILKGDPIRLEKLVDRGNG 119 E P G P Q L G+ + G P+ L N Sbjct: 54 E----PLTLRLGGIFQQPIAPIPGLIPWEEGQSLVGLAFTRQVKGGRPLLKSDLEQTSNA 109 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 S ++ + ++ I + V + + V V E ++L N+ +I I Sbjct: 110 QGSGVITEKMTGMSIPIDNVAGVSPHVSSGERVHVYASFE-DETGAHSGLLLQNMPIIGI 168 Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 ++ D LV TL LT +A L A K+ L L ++ D D Sbjct: 169 QREMEGDHPNLVA--VTLSLTRDEAVLLTHALHYGKIRLGLAAVKDEGNPGIGDVKFASE 226 Query: 240 QEEGKE 245 + K Sbjct: 227 LMKTKT 232 >gi|297543563|ref|YP_003675865.1| SAF domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841338|gb|ADH59854.1| SAF domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 212 Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 79/228 (34%), Gaps = 32/228 (14%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + + I +S + A + K I V+ + D+ G + Sbjct: 4 KKKAILIALSLILAGGLSFFQYQYFKSM---------AESDKKIQVIAAVSDIKAGEKID 54 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + + A ++ G +V I G + + Sbjct: 55 ------TKLGIKVIPQSAYVKEMYL-ANNKVTG-YAKVDIAAGSYVLKSMVSQEK----I 102 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI--- 179 +L + R T+ ++++S++ G IKP D VD+ V + + +V +++ + Sbjct: 103 PVLKEDMRRVTIGVNLTSSLAGKIKPGDVVDIGWVPNDEAKDGASKIVAEKVQIYDVVNK 162 Query: 180 --------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 D N D+ L+ + TL +TP QA + ++ L L+ Sbjct: 163 SGEDVRKADKNNQYDKESLIPAAVTLIVTPEQAITIREYETKGSLFLI 210 >gi|167824387|ref|ZP_02455858.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei 9] Length = 201 Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 69/206 (33%), Gaps = 26/206 (12%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + A++ GI A L + V+++ L G + + L Sbjct: 8 IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P G + + G + I P+ +L+ GL+ + Sbjct: 68 KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177 G+RA + + ++AVG ++P + VDV + + ++LS +RV+ Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175 Query: 178 AIDHNIDSDERV-----LVGSTATLE 198 + + TA L Sbjct: 176 SFGDATVERDGTPGPTGAGARTAVLA 201 >gi|167582064|ref|ZP_02374938.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis TXDOH] Length = 192 Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 21/196 (10%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + A++ GI A L + V+++ L G + + L Sbjct: 8 IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADAL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P + G + I+ P+ +L+ GL+ + Sbjct: 68 KVQQTPAPIA--------GAFPNPTLVTGRIPANDIVAQAPVLESELM----SGLADQIA 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177 G+RA + + ++AVG ++P + VDV + + ++LS +RV+ Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVL 175 Query: 178 AIDHNIDSDERVLVGS 193 + + + Sbjct: 176 SFGDATADRDGTPGPT 191 >gi|297192381|ref|ZP_06909779.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151331|gb|EFH31098.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 237 Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 82/253 (32%), Gaps = 29/253 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R + +++ V +A + V + K D+A + Sbjct: 4 RQRRGVLLILLSVVCGIAAFAGVLTV-------IADVNSKVGPETTAYRVKSDIAPYTPL 56 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 E V+ PE + + D + L G + + G ++ + +V + Sbjct: 57 EAGQFEKVSIPERWLSRSAVTD------LGVLRGKIAVTELRSGSLLQSDMIVQKPE--- 107 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRVIAI 179 L G++ + I ++ V G I+P + V++ ++++N +VI + Sbjct: 108 ---LESGQQEIAIMIDAATGVAGKIRPGNLVNIFATFAAQNDSGTDQSRLIVANAKVIDV 164 Query: 180 DHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSS 231 D T L A+ + A+S A+ + L L Sbjct: 165 GELTALDRRSGDRSTAPREAVPITFALNTADAQRVAYAESFAEHVRLALLPDGSPTTLRP 224 Query: 232 EDSDVWDVQEEGK 244 D +++ K Sbjct: 225 GDGSYDLSEDKNK 237 >gi|291451551|ref|ZP_06590941.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354500|gb|EFE81402.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 210 Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 75/214 (35%), Gaps = 22/214 (10%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + K D+A ++ + E V+ PE + + D ++++ G + Sbjct: 8 VNAKVGPEVPAYRLKTDVAPYKELSADQFEKVSMPERWRSENAVTD------LRQIRGKI 61 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + +G ++ + +V R + G++ + I ++ V G I P V++ Sbjct: 62 AVTTLRQGSLLQTDMIVARPE------VRPGEQEIAIMIDAATGVAGKITPGSDVNIYAT 115 Query: 158 RSL--SERKPTVTVVLSNIRVIAID-------HNIDSDERVLVGSTATLELTPMQAKALV 208 K +++ N RVI + D + + T L+ A+ + Sbjct: 116 FKAENDGEKDQSRIIVENARVIDVGKLTALEPDQDDRRRQPVDAVPITFALSAADAQRVA 175 Query: 209 AAQS-VAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 A+S A + L L D ++ Sbjct: 176 YAESFAAHVRLALVGPGSDEGLRRGDRTYTLDED 209 >gi|307324474|ref|ZP_07603682.1| Flp pilus assembly protein CpaB [Streptomyces violaceusniger Tu 4113] gi|306890205|gb|EFN21183.1| Flp pilus assembly protein CpaB [Streptomyces violaceusniger Tu 4113] Length = 234 Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 81/250 (32%), Gaps = 26/250 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ + L A ++S + D+ Sbjct: 1 MNSRQRRGVILLLLSVLCAVGAFAGVLS-----VVNDVESKVGPETTAYKLTSDVKPYKA 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + E V+ P+ V + D + EL G + + KG ++ + + +R Sbjct: 56 LDAGEFEKVSMPKRYVPSTAVTD------LAELRGKIAVTQLAKGSLLQRDMIANRP--- 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--ERKPTVTVVLSNIRVIA 178 L G++ + I ++ V G I P V++ S KP ++++ V+ Sbjct: 107 ---ALKPGQQEIAIMIDAATGVAGKITPGAEVNIYATFEGSTQGEKPVSKLIVAGAEVLD 163 Query: 179 IDHNI------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSS 231 + D R+ T L A+ + A+S A + L L + Sbjct: 164 LGRITALEPNQDDKRRINEAVPITFALDTKNAQRVAYAESFASHVRLALVAPGGGTSIGP 223 Query: 232 EDSDVWDVQE 241 D + Sbjct: 224 GDRTYTLDGD 233 >gi|152989266|ref|YP_001350208.1| Flp pilus assembly protein CpaB [Pseudomonas aeruginosa PA7] gi|150964424|gb|ABR86449.1| Flp pilus assembly protein CpaB [Pseudomonas aeruginosa PA7] Length = 303 Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 74/249 (29%), Gaps = 33/249 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI----------NVLI 50 M LM + + V + + + VL+ Sbjct: 1 MNSKVLMVLAGLLLVGAVLLGYLGVSIGRAPSTVQVPAVAPATSVVDASLEKLERKPVLV 60 Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + DL V+ + L G D + L G V V + G + Sbjct: 61 ASRDLPALAVIGKDDLVVEML--RTAPAGSYDKP------EALLGKRVWVAVPAGSILSA 112 Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV--- 167 L G L+ + +RA + + GG + P D+VDV++ + Sbjct: 113 ATL--EPGGPLARTIRADERAMAIAVDEVIGGGGFVLPGDYVDVMLFVRDERGGESTSLA 170 Query: 168 TVVLSNIRVIAID----------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 +VL +RV+ +++ TA L + L+ A L Sbjct: 171 QLVLPGVRVLTYGERIAVGGDGQDRSATEKDPRPPRTAVLAVPAEGVARLMLASQAGALR 230 Query: 218 LVLRSIADL 226 L +RS + Sbjct: 231 LAIRSQDEE 239 >gi|318057607|ref|ZP_07976330.1| Flp pilus assembly protein CpaB [Streptomyces sp. SA3_actG] gi|318080518|ref|ZP_07987850.1| Flp pilus assembly protein CpaB [Streptomyces sp. SA3_actF] Length = 225 Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 89/235 (37%), Gaps = 30/235 (12%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 +V+S V AL+A + + +V + + + T K D+A + + E Sbjct: 1 MVLSAVCALIALVGVLGVVRNVNSKVGDEKTA--------YRLKDDIAPYKSLDASQFEK 52 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128 V+ PE + D + + L G + + KG ++ + +V+R L G Sbjct: 53 VSVPERWLPDTAVTQ------LGALRGKIAVTTLHKGSLLQDDMIVNRP------ALRAG 100 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNI--- 183 ++ + I ++ V G I P V++ +K +++ +V+ + Sbjct: 101 EQEIAIMIDAATGVAGKITPGSSVNIYATFKGQNENQKDESRLIVERAQVLDVGKLTPFD 160 Query: 184 ----DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSED 233 D+ R T L A+ + A+S A + L L + P+++ Sbjct: 161 QNNDDNRNRSTEAVPITFGLGTTDAQRVAYAESFATHVRLALVGAGEQPPAAAGP 215 >gi|182436324|ref|YP_001824043.1| hypothetical protein SGR_2531 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776954|ref|ZP_08236219.1| Flp pilus assembly protein CpaB [Streptomyces cf. griseus XylebKG-1] gi|178464840|dbj|BAG19360.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657287|gb|EGE42133.1| Flp pilus assembly protein CpaB [Streptomyces cf. griseus XylebKG-1] Length = 235 Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 88/251 (35%), Gaps = 27/251 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ + L A ++S + + K ++A Sbjct: 1 MNSRQRRGVILLLLSVLCAFAAFAGVLSVISD-----VNSKVGPEVTAYQLKSNVAPYTA 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + E + P+ + + + D ++E++ + + +G ++ + +V + Sbjct: 56 LNSGQFEKIKMPKRWLSENAVTD------LREVESKIAVTELRQGSLLQSDMMVRKPE-- 107 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIA 178 L G++ + I S+ V G I P V++ + ++ V++SN +V+ Sbjct: 108 ----LRAGEQEIAIMIDASTGVAGKITPGATVNIYATFAGEQQGDPAQSKVIVSNAKVLD 163 Query: 179 IDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSS 230 + D R T L + + + A+S A+ + L L + Sbjct: 164 VGELTALDPSADDRGTRATEAVPITFALNTLDTQRVAYAESFAEHVRLALVAPGSDGTIR 223 Query: 231 SEDSDVWDVQE 241 D ++ Sbjct: 224 PGDRTYTLDKD 234 >gi|94312585|ref|YP_585794.1| pilus assembly protein [Cupriavidus metallidurans CH34] gi|93356437|gb|ABF10525.1| pilus assembly protein [Cupriavidus metallidurans CH34] Length = 319 Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 27/243 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ +V+ V ++AG++A+ + + V+++ + G Sbjct: 1 MSSKQIR--IVAIVLLVLAGLLALLALQAARHTAAPAPAQGVVATHAVVVTTRAVPAGKP 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + L+ + P + G DV + + G + V + P+ +L+ G Sbjct: 59 LPADALQVLQLPID--PGGAYQDVAR------VAGQVPLVNLGANVPVLESQLL----AG 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVI 177 L+ +P G RA + + VG ++P D VDV +V + + ++LS +RV+ Sbjct: 107 LARQIPDGARAMAVAVDEVIGVGNQVQPGDFVDVFVVLRRDSQEIPQSQTRMLLSRLRVL 166 Query: 178 AIDHNIDSD----------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 A ++ R TA L + Q LV AQ +L L LR+ D Sbjct: 167 AYGTGAVNEAPKQQGEQMMARREGAKTAVLSVPLEQVGTLVMAQQAGRLMLALRNPTDEA 226 Query: 228 PSS 230 S Sbjct: 227 MPS 229 >gi|239943893|ref|ZP_04695830.1| hypothetical protein SrosN15_23041 [Streptomyces roseosporus NRRL 15998] Length = 235 Score = 93.3 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 88/251 (35%), Gaps = 27/251 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ + L A ++S + + K ++A Sbjct: 1 MNSRQRRGVILLLLSVLCAFAAFAGVLSVISD-----VNSKVGPEVTAYQLKTNVAPYTA 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + E + P+ + + + D ++E++ + + +G ++ + +V + Sbjct: 56 LNSGQFEKIKMPKRWLSENAVTD------LREVESKIAVTELRQGSLLQSDMMVRKPE-- 107 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIA 178 L G++ + I S+ V G I P V++ + ++ V++SN +V+ Sbjct: 108 ----LRAGEQEIAIMIDASTGVAGKITPGATVNIYATFAGEQQGDPAQSKVIVSNAKVLD 163 Query: 179 IDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSS 230 + D R T L + + + A+S A+ + L L + Sbjct: 164 VGELTALDPSADDRGTRATEAVPITFALNTLDTQRVAYAESFAEHVRLALVAPGSDGIIR 223 Query: 231 SEDSDVWDVQE 241 D ++ Sbjct: 224 PGDRTYTLDKD 234 >gi|239990347|ref|ZP_04711011.1| hypothetical protein SrosN1_23773 [Streptomyces roseosporus NRRL 11379] Length = 235 Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 88/251 (35%), Gaps = 27/251 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ + L A ++S + + K ++A Sbjct: 1 MNSRQRRGVILLLLSVLCAFAAFAGVLSVISD-----VNSKVGPEVTAYQLKTNVAPYTA 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + E + P+ + + + D ++E++ + + +G ++ + +V + Sbjct: 56 LNSGQFEKIKMPKRWLSENAVTD------LREVESKIAVTELRQGSLLQSDMMVRKPE-- 107 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIA 178 L G++ + I S+ V G I P V++ + ++ V++SN +V+ Sbjct: 108 ----LRAGEQEIAIMIDASTGVAGKITPGATVNIYATFAGEQQGDPAQSKVIVSNAKVLD 163 Query: 179 IDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSS 230 + D R T L + + + A+S A+ + L L + Sbjct: 164 VGELTALDPSADDRGTRATEAVPITFALNTLDTQRVAYAESFAEHVRLALVAPGSDGTIR 223 Query: 231 SEDSDVWDVQE 241 D ++ Sbjct: 224 PGDRTYTLDKD 234 >gi|328954938|ref|YP_004372271.1| Flp pilus assembly protein CpaB [Coriobacterium glomerans PW2] gi|328455262|gb|AEB06456.1| Flp pilus assembly protein CpaB [Coriobacterium glomerans PW2] Length = 223 Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 86/236 (36%), Gaps = 21/236 (8%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN----PAKFINVLISKGDLAVG 58 + R + I +S +A +++ S + + V + ++V ++ + G Sbjct: 1 MNRTIRIALSVASGALAIFLSLSYASSVRSEADRVQADALARYGGDLVSVCVATRTIEPG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + ++ + + G +++++ G V + + V Sbjct: 61 ETLDETNVQVKEWVASLLPQGAAT------SLRDVAGTRVTSRVPSHAVLCP---VYTET 111 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 G + +P GK A ++ + A+GG ++ D VDV + + + + Sbjct: 112 SGETLDVPSGKVAVSVPVDDQHALGGAVESGDTVDVYVSKDGLSDRLCEARI-------- 163 Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 ID + ATL + P K L+AA + +SL + + + +S+ Sbjct: 164 IDTSSRDSSADTAMKWATLAVDPDTVKELLAAIARGSVSLTMPAPSTDAKASATSG 219 >gi|294814743|ref|ZP_06773386.1| Flp pilus assembly protein CpaB [Streptomyces clavuligerus ATCC 27064] gi|326443124|ref|ZP_08217858.1| Flp pilus assembly protein CpaB [Streptomyces clavuligerus ATCC 27064] gi|294327342|gb|EFG08985.1| Flp pilus assembly protein CpaB [Streptomyces clavuligerus ATCC 27064] Length = 237 Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 30/252 (11%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ ++VS + AL A + +++ + + T D+A + Sbjct: 6 RRGVILLIVSVLCALGAFAGVISVINDVNSKVGPEATA--------YRLASDVAPYTALR 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 P E VA P + + D + + G + + KG ++ + +V R Sbjct: 58 PGQFEKVAVPRRWLPRTAVTD------LSTVRGKIAVTELRKGSLLQDDMIVKRPE---- 107 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAID 180 L G++ + I ++ V G I P D V++ ++++N +VI + Sbjct: 108 --LAPGEQEIAIMIDAATGVAGKITPGDLVNIFATFAGKAEGDPDQSRIIVTNAKVIDVG 165 Query: 181 HNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSE 232 D R+ T L A+ + A+S A+ + L L + + Sbjct: 166 RLTPLDPRRDDRRSRMREAVPITFALGTKDAQRVAHAESFAEHVRLALLAKGSPSTLRPG 225 Query: 233 DSDVWDVQEEGK 244 DS ++ + Sbjct: 226 DSTYTLDEDRSR 237 >gi|83747918|ref|ZP_00944950.1| SIGNAL PEPTIDE HYPOTHETICAL; CpaB2 [Ralstonia solanacearum UW551] gi|207739459|ref|YP_002257852.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609] gi|83725451|gb|EAP72597.1| SIGNAL PEPTIDE HYPOTHETICAL; CpaB2 [Ralstonia solanacearum UW551] gi|206592835|emb|CAQ59741.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609] Length = 277 Score = 92.5 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 72/219 (32%), Gaps = 35/219 (15%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 + EN V+++ L G +T + + + P D Sbjct: 25 WKSAHRPPAPAAAQQNENGKTLYPVVVTVKPLEAGKPITADQVAVESLPIN--PADAFAD 82 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143 ++ G PI G P+ +L + GL+ + G+RA + + VG Sbjct: 83 ------AGKVVGREPITPIGTGVPLIGSQL----SSGLALQVAPGQRAVAITVDEVVGVG 132 Query: 144 GMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELT 200 + P D+VDV +V ++ ++L ++RV L + Sbjct: 133 NRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRV--------------------LAVP 172 Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 L A +L L LR+ +D + D + Sbjct: 173 VESVSQLAIAHQSGRLLLALRNPSDDAEPTVRPQDAPAL 211 >gi|297202071|ref|ZP_06919468.1| flp pilus assembly protein CpaB [Streptomyces sviceus ATCC 29083] gi|297148028|gb|EDY58323.2| flp pilus assembly protein CpaB [Streptomyces sviceus ATCC 29083] Length = 235 Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 72/214 (33%), Gaps = 22/214 (10%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + K D+ +T E P+ + + D + L + Sbjct: 33 VKSKVGPEVTAYEVKKDIEPYTRLTAAQFEKTEMPKRWLSANAVTD------LAALRDKI 86 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + KG ++ + +VD+ L G++ + I ++ V G I P V+V Sbjct: 87 AVTTLKKGSLLQSDMIVDQP------ALQPGQQEVAIMIDAATGVAGKITPGSAVNVYAT 140 Query: 158 RSL--SERKPTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALV 208 ++++N RV+ + D T L+ + A+ L Sbjct: 141 FEGQRENDPDQSKIIVTNARVLDVGQITALQPDADDRTREASKAVPITFALSALDAQRLT 200 Query: 209 AAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQE 241 A+S A ++ L L + + ++ ++ Sbjct: 201 YAESFAKRVRLALVAPGETGTVPEQERTYELAKD 234 >gi|223984146|ref|ZP_03634297.1| hypothetical protein HOLDEFILI_01590 [Holdemania filiformis DSM 12042] gi|223963878|gb|EEF68239.1| hypothetical protein HOLDEFILI_01590 [Holdemania filiformis DSM 12042] Length = 238 Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 20/235 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + + + LV + L + ++V IS L + Sbjct: 1 MKKKIVFTLT-ALTAVLVLIFSGIFLFRRELTRRL--------SLVSVPISVSTLPPRHL 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAM-QELDGVLVRVPILKGDPIRLEKLVDRGN- 118 +T + L W+ P + + + + + L+G I G E L Sbjct: 52 ITVDDLTWIDVPSAYLQADILWEEAELVGLWTRLEGT-----IPAGSFFYQEMLDAPEAM 106 Query: 119 -GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 +LL K + + ++IS G +++P VD+ + E + + +L +RV+ Sbjct: 107 ADFSVTLLNKDQAVFPLAVTISEISGQLMQPGQQVDLYVYGKWPEGQEMMDCLLRGVRVL 166 Query: 178 AIDHNIDSD---ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 + + + ST L + L A+ ++ L L + + P Sbjct: 167 ELQNRNGERIGQADDTLPSTVLLAVDQTYLAYLSIAEKKGRIELYLTASSYAEPE 221 >gi|167816011|ref|ZP_02447691.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei 91] Length = 183 Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 21/188 (11%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + A++ GI A L + V+++ L G + + L Sbjct: 8 IIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADAL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P G + + G + I P+ +L+ GL+ + Sbjct: 68 KVQQTPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELM----SGLADQIA 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVI 177 G+RA + + ++AVG ++P + VDV + + ++LS +RV+ Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVL 175 Query: 178 AIDHNIDS 185 + Sbjct: 176 SFGDATVE 183 >gi|167824271|ref|ZP_02455742.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei 9] Length = 192 Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 17/165 (10%) Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMI 146 +L G L+R P+ G P+ ++ G L++ L G RA ++ I S G+I Sbjct: 28 EPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLI 87 Query: 147 KPNDHVDVVMVRS---------LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVG 192 +P D+VDV++ + +R + + +RV+A+ D+ + Sbjct: 88 EPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRA 147 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIA--DLNPSSSEDSD 235 T T E++ A+ + + LSL LRS A D + ++ Sbjct: 148 RTVTFEVSSRDAQVITVGAHLGALSLALRSFATSDRGAVGTAPAE 192 >gi|303241932|ref|ZP_07328425.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2] gi|302590487|gb|EFL60242.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2] Length = 257 Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 49/260 (18%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K + ++ V L+A ++ +S + + V+ + ++ V+ Sbjct: 10 KNRSIYLVIAGIVLGLIAAVLMYMGISSY------------TGMVKVVAASKEIPAFSVI 57 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120 ++ + P+E ++ + Q + G + R I I+ E L +G+ Sbjct: 58 NEADIKLIDVPKEFA-------KNKASDKQLVIGRVSRTIIPADTAIQQEFLAAKGSSSS 110 Query: 121 ------LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-----------------MV 157 L+ L + RA T+ + S GG +KP D VD++ Sbjct: 111 SLLSTKLTDLQNEKLRAFTIPVDQISGCGGEMKPGDLVDIIGSFSIVIPEDESVNNQPQS 170 Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 +++ ++ + V+ + + + P QA+ + A K+S Sbjct: 171 SKPQQKEVISKLLAGQVLVL------KTLGENTEIEGIVVAVEPQQAQEIQFALQAGKIS 224 Query: 218 LVLRSIADLNPSSSEDSDVW 237 + L +S + Sbjct: 225 VALNPYNPDQKASKTTTTTV 244 >gi|167911034|ref|ZP_02498125.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei 112] Length = 210 Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 15/152 (9%) Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMI 146 +L G L+R P+ G P+ ++ G L++ L G RA ++ I S G+I Sbjct: 28 EPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLI 87 Query: 147 KPNDHVDVVMVRS---------LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVG 192 +P D+VDV++ + +R + + +RV+A+ D+ + Sbjct: 88 EPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRA 147 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 T T E++ A+ + + LSL LRS A Sbjct: 148 RTVTFEVSSRDAQVITVGAHLGALSLALRSFA 179 >gi|260775654|ref|ZP_05884550.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] gi|260608070|gb|EEX34239.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] Length = 263 Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 97/265 (36%), Gaps = 27/265 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ + + G+ A+ + + P +++ + K Sbjct: 1 MKNKVIISLASFSILVGAYGLSAVL-----SPKPTDATEVVPTRYVKLWELKEPAKAKQE 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 +T L E + D + + G+L R + +G + + + + Sbjct: 56 LTREQLSVRRMKENEANELGYVDDVSLSI---VPGMLFRSNMAEGTLVTADDFIRPDDAD 112 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV---------- 169 + +L +GK + + + VG I+ D +D++ L+ V Sbjct: 113 YVDFILAEGKMPYRLTVVTENIVGTAIESGDLIDILAFTGLNGEDAYQEVALASKPVKGA 172 Query: 170 -----VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 + + I+V+ ++ + D+ +T LE+ QA L A+ +A L + +SI Sbjct: 173 ISVTPIFAAIKVLRVETEVKKDDTQPQATTFILEMDRKQAVTLTLAKRIATLEI-QKSIG 231 Query: 225 --DLNPSSSEDSDVWDVQEEGKEIQ 247 D++ ++ D+ + E++ Sbjct: 232 QFDMSEYQADAGDILHDFDSIVELR 256 >gi|21223378|ref|NP_629157.1| hypothetical protein SCO5005 [Streptomyces coelicolor A3(2)] gi|8218167|emb|CAB92598.1| hypothetical proten SCK15.07 [Streptomyces coelicolor A3(2)] Length = 203 Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 22/212 (10%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + K D+ + E V PE + + + D+ + + G + Sbjct: 3 SKVGPEVTAYRVKSDIEPYTELGATQFEKVEMPERWLSENAVTDLSR------VRGKIAV 56 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 + G ++ + +VD L G++ + I ++ V G I P V+V Sbjct: 57 TTLKAGSLLQTDMIVDTP------ALRPGQQEVAIMIDAATGVAGKITPGSTVNVYATFE 110 Query: 160 LSERK--PTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALVAA 210 ++++ +VI + D T L+ + A+ + A Sbjct: 111 GPREGDPDQSKIIVTGAKVIDVGELTSLEPDEDSRDREPTDAVPITFALSTIDAQRITYA 170 Query: 211 QSVA-KLSLVLRSIADLNPSSSEDSDVWDVQE 241 +S A ++ L L + +D ++ Sbjct: 171 ESFARRVRLALVAPGGDTTVPDKDRTYELAKD 202 >gi|39936739|ref|NP_949015.1| hypothetical protein RPA3677 [Rhodopseudomonas palustris CGA009] gi|192292565|ref|YP_001993170.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1] gi|39650595|emb|CAE29118.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] gi|192286314|gb|ACF02695.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1] Length = 193 Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 6/150 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + ++ VA +A A+ + VL++K D+ +G Sbjct: 7 MNPARIVVLTIAVGAGGVAAYLA-----SSTGPQPGAPAAPVAQTVEVLVAKNDIPLGQA 61 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 VTP L+W +P FI P A ++ G + R P + G+PIR +KLV Sbjct: 62 VTPGDLQWQTWPAATASSNFIRRDLHPGATTDIGGSITRAPFIAGEPIRRQKLVQADGSS 121 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPN 149 + + +P G RA + + ++ G + Sbjct: 122 SVPAFVPTGMRAISTETALEPGATGARQSG 151 >gi|294146465|ref|YP_003559131.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] gi|292676882|dbj|BAI98399.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] Length = 302 Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 89/250 (35%), Gaps = 37/250 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTE----EVITENPAKFINVLISKGDLA 56 M+L + ++ + +A+ + + + A + ++ + + Sbjct: 1 MRLGSKAKLTIAVGLTSASAFLALGVRELRNASAATVQGQAAPVRVAAPVLLVRAARAIR 60 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G +T ++ G E+ G + I I + + Sbjct: 61 TGETITAAMIRNA--------PGDPTRYPYAATSAEVVGKVATRDIGLHALIARDAVGME 112 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVT 168 L+ +P G RA ++D + AV G+I+P D VDV +V ++ + Sbjct: 113 SK--LAIRVPMGMRAISIDTTAEIAVAGLIRPGDRVDVQVVYPGADAISGARGSGRSRAQ 170 Query: 169 VVLSNIRVIAIDHNIDSDER---------------VLVGSTATLELTPMQAKALVAAQSV 213 +L ++V+A+ + ++ T TL LTP Q L A+++ Sbjct: 171 ALLQMVQVLAVGEVVVGTQQASGANGGVEGALSSPPPPARTVTLALTPEQVSILSLAKNI 230 Query: 214 AKLSLVLRSI 223 L+L LR+ Sbjct: 231 GALTLSLRNP 240 >gi|170724969|ref|YP_001758995.1| hypothetical protein Swoo_0604 [Shewanella woodyi ATCC 51908] gi|169810316|gb|ACA84900.1| conserved hypothetical protein [Shewanella woodyi ATCC 51908] Length = 279 Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 29/272 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++L+ I+ +A +L+S T+ V + AK + +K L G Sbjct: 1 MLNSKLIFIIAFIAVLTGLYGVADKLLSTSESVTQPVSDDGIAKTFTLWQTKSSLNKGEH 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 ++ L+ V + ++ + N + L+ + G + E+L +G Sbjct: 61 LSLADLKRVQLGRDESLALGVNADVELNLDPQ---SLLNSSVEAGQYLFPEQLSHPGESG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167 L+ + +G + ++ + + I P D +D++ V S Sbjct: 118 YLNLITREGMTLYPLTVATRNMIQDYILPGDEIDIMTVSSPQHNLANDMSRLDDFIGLRA 177 Query: 168 TVVLSNIRVIAIDH------------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAK 215 ++++ +RVI++ + + +E+ P L AQ Sbjct: 178 SMLMKRVRVISVADSDTDSQSQSSKISPSMKSSDKSQTRIVIEVDPEDLPRLTLAQRTMH 237 Query: 216 LSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 + V S + ++ SDV + E++ Sbjct: 238 IE-VFHSQSYRAKPEADVSDVINNYTGVVELR 268 >gi|225017400|ref|ZP_03706592.1| hypothetical protein CLOSTMETH_01326 [Clostridium methylpentosum DSM 5476] gi|224949810|gb|EEG31019.1| hypothetical protein CLOSTMETH_01326 [Clostridium methylpentosum DSM 5476] Length = 290 Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 81/263 (30%), Gaps = 31/263 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G ++ ++ ++P + TE V + + G Sbjct: 1 MNKNIFRNRTIIGAVCILLAVLVCFGITPLFNAGLKAQTEA------VRVKAEVIPRGTY 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T +++E + D ++ E+ G V + K + L Sbjct: 55 ITADMVEVYTRGASGMPDSIAT------SLDEVVGRYTDVELRKNTDVNTGWLSSEPLTQ 108 Query: 121 LSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 L L K A ++ I + + G ++ D + + + T L + V+ Sbjct: 109 YEYLTKLDGSKVAISVTIPTFAKGGSGKVEAGDIIMLFAT-DKDTGETTQPPELKYVEVL 167 Query: 178 AIDHNIDSDER-------------VLVGSTATLELTPMQAKALVAAQSVAKLSLV--LRS 222 A + +D+ + ST TL + QA+ L + L L R Sbjct: 168 AATQSSGADKEYQAPQEDEEENPEESLPSTITLLVNTEQAQILAHLEESNSLHLAFVYRG 227 Query: 223 IADLNPSSSEDSDVWDVQEEGKE 245 + D + V+ E Sbjct: 228 TRENAEKFLAAQDQFFVEPEEAT 250 >gi|154499687|ref|ZP_02037725.1| hypothetical protein BACCAP_03344 [Bacteroides capillosus ATCC 29799] gi|150271285|gb|EDM98542.1| hypothetical protein BACCAP_03344 [Bacteroides capillosus ATCC 29799] Length = 296 Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 101/278 (36%), Gaps = 38/278 (13%) Query: 1 MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MKL R + ++S V A V +A+ I ++ + G Sbjct: 7 MKLNNRFIFGILSLVLAAVIAFVAL-----------PTIARQTNGKTEIVRITQPVLKGE 55 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 +T + E V N+ +M +++G+ V + +GD I K+ Sbjct: 56 TITSDNAEVVEVGGYNLPSNVAH------SMDDVEGLYVTADLAEGDYILTSKVSTVPVS 109 Query: 120 GLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 +L +P GK A ++ + +++S + ++P D + + +E P L ++V Sbjct: 110 SDVALNDIPSGKVAISLTVKTLASGLSDKLQPGDIIRIYHFLETAEEVPE----LRFVKV 165 Query: 177 IAIDHN----------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIA 224 +++ + DE +T T+ +P QA+ + ++ + L R+ Sbjct: 166 LSVTDSDGINVDNTKETTEDEEPQQSATITVLASPEQARIITEMENDGVAHVALISRNND 225 Query: 225 DLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEGI 262 L + D + E +++ GE Sbjct: 226 QLAEELLAEQDKTLQEIYFPE-TLVEENAESQDGGEAA 262 >gi|167845817|ref|ZP_02471325.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei B7210] Length = 181 Score = 90.6 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 17/164 (10%) Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMI 146 +L G L+R P+ G P+ ++ G L++ L G RA ++ I S G+I Sbjct: 18 EPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLI 77 Query: 147 KPNDHVDVVMVRS---------LSERKPTVTVVLSNIRVIAIDHN-----IDSDERVLVG 192 +P D+VDV++ + +R + + +RV+A+ D+ + Sbjct: 78 EPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRA 137 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIA--DLNPSSSEDS 234 T T E++ A+ + + LSL LRS A D + + Sbjct: 138 RTVTFEVSSRDAQVITVGAHLGALSLALRSFATSDRGAVGTAPA 181 >gi|229588196|ref|YP_002870315.1| hypothetical protein PFLU0648 [Pseudomonas fluorescens SBW25] gi|229360062|emb|CAY46916.1| putative membrane protein [Pseudomonas fluorescens SBW25] Length = 313 Score = 90.2 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 66/211 (31%), Gaps = 32/211 (15%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 + V++ D+ +T L V G + + + G Sbjct: 48 IAAAEDQTRQPVVVLVHDVPAYRALTAADLVVERL--RTVPVGSLTQ------LDQAIGR 99 Query: 97 LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 + + G + + G G L+ ++ +RA + + G + P D+VDV++ Sbjct: 100 MPLRALGAGTWLTEDSFT--GGGPLARMIRPDERALAVAVDEVIGAAGQLTPGDYVDVLL 157 Query: 157 VRSLSER--KPTVTVVLSNIRVIAIDHNIDSDERVLVG--------------------ST 194 + + +VL +R++++ + L T Sbjct: 158 FLRQDASNAEQSAQIVLPAMRLLSVGDQMGLANDGLPAVPPPVTVEERAQAAQRRAAART 217 Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 L + L+ A L L +RS + Sbjct: 218 VVLAVPEPLLSRLMLAAQAGTLRLAVRSAEE 248 >gi|295836768|ref|ZP_06823701.1| flp pilus assembly protein CpaB [Streptomyces sp. SPB74] gi|295826199|gb|EFG64734.1| flp pilus assembly protein CpaB [Streptomyces sp. SPB74] Length = 225 Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 78/226 (34%), Gaps = 22/226 (9%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V + + + + K D+A + + E V+ P+ + Sbjct: 2 VLSAVCALVALVGVLGVVRNVNSKVGDEKTAYRLKNDIAPYKSIDASQFEKVSVPKRWLP 61 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137 D + + + L G + + +G ++ + +V+R L G++ + I Sbjct: 62 DTAVTE------LGALRGKIAVTTLHRGSLLQDDMIVNRP------ALRAGEQEIAIMID 109 Query: 138 ISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNI-------DSDER 188 ++ V G I P V++ +K +++ +V+ + D+ R Sbjct: 110 AATGVAGKITPGSSVNIYATFKAQNEGQKDESRLIVERAQVLDVGKLTPFDQNNDDNRNR 169 Query: 189 VLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSED 233 T L A+ + A+S A + L L + P+++ Sbjct: 170 TTEAVPITFGLGTGDAQRVAYAESFATHVRLALVGAGEQPPAAAGP 215 >gi|255020087|ref|ZP_05292158.1| Flp pilus assembly protein CpaB [Acidithiobacillus caldus ATCC 51756] gi|254970449|gb|EET27940.1| Flp pilus assembly protein CpaB [Acidithiobacillus caldus ATCC 51756] Length = 419 Score = 89.8 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 7/188 (3%) Query: 6 LMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64 + + V+ + L A +A+ + S E+ I ++ D+A G ++ + Sbjct: 25 WLILAVAILAGLGATYLAVHTLRSREEAALAELRASQKNSTIKAVVPVQDIAPGTILDLS 84 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 ++ + P + I P + G V VP+L+G PI L G L+ + Sbjct: 85 MVAARSIPADTAPSDVIT----PETFDQYAGHRVNVPLLQGRPILASYLS--GRRTLADI 138 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184 + K A T + S + G+++P DHVDV+ + S R +++ D Sbjct: 139 VDPDKLAMTFTVDNVSTLDGLLQPGDHVDVLWFYAGGGADGQAAGDGSRSRRVSLPGMED 198 Query: 185 SDERVLVG 192 E Sbjct: 199 GAEGAFGA 206 >gi|312139255|ref|YP_004006591.1| flp pilus assembly protein cpab [Rhodococcus equi 103S] gi|311888594|emb|CBH47906.1| putative Flp pilus assembly protein CpaB [Rhodococcus equi 103S] Length = 245 Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 87/258 (33%), Gaps = 34/258 (13%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 TR++ + + V A+ + + V + + ++VL++ + Sbjct: 2 RTRIIAAICAIVLAVAGTLALISYVRGADARAL-----AGTRTVDVLVADQTIPKNTPAD 56 Query: 63 P--NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++ PE V + ++ +L G + +L G+ + + VD Sbjct: 57 SLVGMVVVKKLPEMAVLP------DRVTSLDQLSGKVALTDLLPGEQLVSARFVDPATAR 110 Query: 121 LSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 +P+G + T+ + A+GG I D V V M S + + L +RV Sbjct: 111 SQDQGGIPEGMQEVTVLLEPQRALGGHIASGDTVGVFMSFSPPVKNYETHLRLQKVRVTR 170 Query: 179 I---------DHNIDSDERVLVGST----ATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 + + D T +L + A+ +V A + L Sbjct: 171 VQGTFSNADEGDSATVDSSPSPAPTEAFLVSLAVDVPMAERVVFAAEHGTIWLS------ 224 Query: 226 LNPSSSEDSDVWDVQEEG 243 P SS ++ V EG Sbjct: 225 NEPPSSNEAGASVVSPEG 242 >gi|220913319|ref|YP_002488628.1| SAF domain protein [Arthrobacter chlorophenolicus A6] gi|219860197|gb|ACL40539.1| SAF domain protein [Arthrobacter chlorophenolicus A6] Length = 242 Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 15/190 (7%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 T PA + L + DL G VT + L V P + +G + + E G + Sbjct: 61 TPAPADTVTALSAARDLPAGTAVTASDLVPVRVPPGLLSEGVL------SGQAEAAGKQL 114 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 P+ KG + +L+ GL + P G A + ++ +S++ ++ P V+VV+ Sbjct: 115 ATPLRKGQLVTDVQLLGP---GLLTGTPPGSAAVPLRMADASSIQ-LVSPGQLVNVVLTS 170 Query: 159 SLS-ERKPTVTVVLSNIRVIAIDHNIDSDER----VLVGSTATLELTPMQAKALVAAQSV 213 +++ V+ + + V+ + + T Q+ L A + Sbjct: 171 GNGFDQQGPSEVLAAGVPVLWTATKGGQGGQWLGTAETDGLIVVAATAEQSARLAGASTQ 230 Query: 214 AKLSLVLRSI 223 KL VL Sbjct: 231 GKLFFVLVGP 240 >gi|325275758|ref|ZP_08141635.1| Flp pilus assembly protein CpaB [Pseudomonas sp. TJI-51] gi|324099109|gb|EGB97078.1| Flp pilus assembly protein CpaB [Pseudomonas sp. TJI-51] Length = 318 Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 33/224 (14%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 P V++ + + +T + + + G V Sbjct: 44 PSVATAPAPSAPVEVPRTAVVVLRKSVPANTPLTEDDVLVERL--QVAPAGAYQQVA--- 98 Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148 ++ G P+ G + + G L+ ++ +RA + + G ++P Sbjct: 99 ---QVIGRSSARPLAAGTWLEEASF--QAGGPLARMIRAHERAVALGVDEVVGAAGQLRP 153 Query: 149 NDHVDVVMVRSLSERKPT--VTVVLSNIRVIAIDHNIDSDERVLVG-------------- 192 D+VDV++ P VVL +RV+++ Sbjct: 154 GDYVDVLLFLREEPNNPQASAQVVLPALRVLSVGEQTGLANDGRPAQSADEQKARRDQSG 213 Query: 193 -------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 T + + A L+ A L L +RS + + Sbjct: 214 LGNGAGTRTVAVAVPEAMASRLMLAAQAGTLRLAVRSADEQRLA 257 >gi|325964059|ref|YP_004241965.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470146|gb|ADX73831.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans Sphe3] Length = 257 Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 15/190 (7%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 T P + L + DL+ G ++P + V P + DGF+ + + G + Sbjct: 78 TPAPVSTVTALAAARDLSAGAAISPADVSAVRVPPGMMADGFLQN------AGDAAGKQL 131 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 P+ KG + +L+ GL + P G A + ++ S++ ++ P V+VV+ Sbjct: 132 AAPLRKGQLLTDAQLLGP---GLLAGTPPGSAAVPLRMADPSSIQ-LVSPGQLVNVVLTA 187 Query: 159 SLS-ERKPTVTVVLSNIRVIAIDHNIDSDER----VLVGSTATLELTPMQAKALVAAQSV 213 +++ V+ + V+ + + QA L A + Sbjct: 188 GNGFDQQEPPEVLAEGVPVLWTSTQGGQSGQWLGTSETEGLIVVAANGDQAARLAGASTQ 247 Query: 214 AKLSLVLRSI 223 KL VL Sbjct: 248 GKLFFVLVGP 257 >gi|296131921|ref|YP_003639168.1| SAF domain protein [Thermincola sp. JR] gi|296030499|gb|ADG81267.1| SAF domain protein [Thermincola potens JR] Length = 204 Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 84/207 (40%), Gaps = 25/207 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K ++ +++S + + A + + +V + + + ++ + D+ + Sbjct: 4 KKIGIIFVILSILLSFGAAYLFLNMVQKTE--------KTMGETVQIITASKDVEAYTPL 55 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T + L + P + + F+ + +E+ G + VP+ K D I + + Sbjct: 56 TRDKLSYTEIPRKYLNGSFLTNE------KEVLGKVTLVPMAKNDIITRSMIKKVDD--- 106 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 LPK R + I+P D VD++ +L ++ V+ S+I V H Sbjct: 107 ---LPKEVRIVQLR-PPVVFDSKEIEPGDRVDIIGTFALDNKQLITQVIQSDIIV----H 158 Query: 182 NIDSDERVLVGSTATLELTPMQAKALV 208 +I DE+ S+ L++ +A L+ Sbjct: 159 DIAMDEKKNEISSLGLQVEIEKALQLI 185 >gi|167815899|ref|ZP_02447579.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei 91] Length = 166 Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 15/155 (9%) Query: 85 HQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVG 143 +L G L+R P+ G P+ ++ G L++ L G RA ++ I S Sbjct: 1 AAGEPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNA 60 Query: 144 GMIKPNDHVDVVMVRS---------LSERKPTVTVVLSNIRVIAIDHN-----IDSDERV 189 G+I+P D+VDV++ + +R + + +RV+A+ D+ + Sbjct: 61 GLIEPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPN 120 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 T T E++ A+ + + LSL LRS A Sbjct: 121 TRARTVTFEVSSRDAQVITVGAHLGALSLALRSFA 155 >gi|294631139|ref|ZP_06709699.1| flp pilus assembly protein CpaB [Streptomyces sp. e14] gi|292834472|gb|EFF92821.1| flp pilus assembly protein CpaB [Streptomyces sp. e14] Length = 235 Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 35/251 (13%), Positives = 91/251 (36%), Gaps = 27/251 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ + L A ++S +V + K D+ Sbjct: 1 MNSRQRRGVILLLLSVLCALGAFAGVLSVIDDAKSKV-----GPEVTAYQLKTDVKPYTT 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++ + E + P+ + + D+ + + G + + +G ++ + +VD+ Sbjct: 56 LSADQFEKIKMPKRWLSPNAVTDLSR------IRGKIAVTTLRQGSLLQSDMIVDQP--- 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIA 178 L G++ + I ++ V G I P V+V + + ++++ +V+ Sbjct: 107 ---ALRPGQQEVAIMIDAATGVAGKITPGSSVNVYATFAGQRQGDPAQSKIIVTGAKVLD 163 Query: 179 IDHNIDSD-------ERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230 + D ++ T L+ + A+ + A+S A ++ L L + Sbjct: 164 VGRITALDPNSDNRSQQPSEVVPITFALSALDAQRITYAESFAQRVRLALVAPGGDAGVP 223 Query: 231 SEDSDVWDVQE 241 + D ++ Sbjct: 224 AGDRTYELAKD 234 >gi|325673440|ref|ZP_08153131.1| hypothetical protein HMPREF0724_10913 [Rhodococcus equi ATCC 33707] gi|325555461|gb|EGD25132.1| hypothetical protein HMPREF0724_10913 [Rhodococcus equi ATCC 33707] Length = 245 Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 78/234 (33%), Gaps = 28/234 (11%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 TR++ + + V A+ + + V + + ++VL++ + Sbjct: 2 RTRIIAAICAIVLAVAGTLALISYVRGADARAL-----AGTRTVDVLVADQTIPKNTPAD 56 Query: 63 P--NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++ PE V + ++ +L G + +L G+ + + D Sbjct: 57 SLVGMVVVKKLPEMAVLP------ERVTSLDQLSGKVALTDLLPGEQLVSARFADPATAR 110 Query: 121 LSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 +P+G + T+ + A+GG I D V V M S + + L +RV Sbjct: 111 SQDQGGIPEGMQEVTVLLEPQRALGGHIASGDTVGVFMSFSPPVKNYETHLRLQKVRVTR 170 Query: 179 I---------DHNIDSDERVLVGST----ATLELTPMQAKALVAAQSVAKLSLV 219 + + D T +L + A+ +V A + L Sbjct: 171 VQGTFSNADEGDSATVDSSPSPAPTEAFLVSLAVDVPMAERVVFAAEHGTIWLS 224 >gi|254506045|ref|ZP_05118189.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16] gi|219550863|gb|EED27844.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16] Length = 267 Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 111/275 (40%), Gaps = 26/275 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + V A++ G+ + + + T P KF +V + ++ V Sbjct: 1 MRTKLILAVA---VLAIIFGLYGLAGNLTRPTDSSSLQTAQPLKFYSVWQVRSQVSATDV 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 V P L+ + E+ D + + + + G + R + +G + +V + Sbjct: 58 VRPEHLQVLKIQED---DAALQGIAEDMLFEYPLGSIYRSDMAEGSLLYPTDIVAPNSPE 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM--------------VRSLSERKP 165 L L G + +S + VGG+I+ + ++D++ + + Sbjct: 115 YLDLTLADGYVPYPLKVSPEAVVGGVIRASSYIDILALTSPTNVATIEVGSSATARGKAI 174 Query: 166 TVTVVLSNIRVIAIDHN---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 +++ VL ++V+ +D + + E V + + LEL Q L A+ +A L V +S Sbjct: 175 SISPVLMGVKVLRVDQSDAKEATGEDVALETHLILELDRKQVSILSVAKQIATLE-VHKS 233 Query: 223 IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 + + P+ +D DV K + +A + K Sbjct: 234 VGNYRPADLS-ADAGDVLPGFKSVIEYRADAVTIK 267 >gi|295395660|ref|ZP_06805852.1| flp pilus assembly protein CpaB [Brevibacterium mcbrellneri ATCC 49030] gi|294971476|gb|EFG47359.1| flp pilus assembly protein CpaB [Brevibacterium mcbrellneri ATCC 49030] Length = 259 Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 83/235 (35%), Gaps = 40/235 (17%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ L+A ++ + +V + ++ V ++K D+ Sbjct: 1 MNPKQRRGLLLMIAATLLAIMVFIAVV-----VYVQNVSSKVGPTTEVYVAKEDITAFQP 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + ++LE P + + + +++++ G V I G I+ + + Sbjct: 56 IEQDMLETKTVPNRYITEDMVT------SLEQVAGQKASVKISAGSFIQTDAIEP----- 104 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV----------- 169 +S + G+R ++ + V G + P D VDVV + + Sbjct: 105 -ASSIEDGQREISITFVGDAGVSGRVSPGDKVDVVASFARARENDQGETAYKRADIPYNV 163 Query: 170 ---VLSNIRVIAIDH---------NIDSDERVLVGSTATLELTPMQAKALVAAQS 212 V+SN V+++ D T ++ +A L A++ Sbjct: 164 SGIVVSNATVVSVGQPVDPNAVVGAADQSGAEAEAVAVTFAVSVEEAGRLSYAEA 218 >gi|239929205|ref|ZP_04686158.1| hypothetical protein SghaA1_13346 [Streptomyces ghanaensis ATCC 14672] Length = 235 Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 77/205 (37%), Gaps = 23/205 (11%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + K ++A ++ E + PE + + + D ++E+ G + Sbjct: 33 VKSKVGPEVTAYRLKTNVAPYSTLSAGQFEKIKMPERWLSENAVTD------LREIRGKI 86 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + +G ++ + +VD+ L G++ + I ++ V G I P V+V Sbjct: 87 AVTTLREGSLLQSDMVVDQP------ALQPGQQEVAIMIDAATGVAGKITPGSTVNVYAT 140 Query: 158 RSLSERK--PTVTVVLSNIRVIAID-------HNIDSDERVLVGSTATLELTPMQAKALV 208 ++++N +V+ + D R T L+ + A+ + Sbjct: 141 FEGEREGAAAQSKIIVTNAKVLDVGRLTALEPDEEDRGRRPTDAVPITFALSTIDAQRIT 200 Query: 209 AAQSVA-KLSLVLRSI-ADLNPSSS 231 A+S A ++ L L + D + S Sbjct: 201 YAESFAQRVRLALVAPGGDTSVPDS 225 >gi|323495636|ref|ZP_08100707.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326] gi|323319271|gb|EGA72211.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326] Length = 268 Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 106/276 (38%), Gaps = 27/276 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++GI V A+V G+ + + V PAK I+V D+ V Sbjct: 1 MRTKLILGIA---VVAIVFGLYGLAGNLTESKAPQLVEKNKPAKLISVWQLNSDVPSAEV 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 V PN L+ V EE I + G + R + G + +V + Sbjct: 58 VRPNQLKIVKLSEEQAAAIGISEDMLFEYPP---GSIFRSDMKVGTTLFATDIVAPNSPE 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---------------ERK 164 L L G + +S + VGG+I+ + +VDV+ + S R Sbjct: 115 YLDLTLSDGFVPYPLKVSPDAVVGGVIRASSYVDVLALTSPEHLVSVEVNSSDSVARGRA 174 Query: 165 PTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT---LELTPMQAKALVAAQSVAKLSLVLR 221 +++ VL ++V+ ++ + + + T LEL Q L A+ ++ L V + Sbjct: 175 VSISPVLMGVKVLRVEQTFEEGAQEAGVAPDTHLILELDRKQVSILSVAKQISSLE-VHK 233 Query: 222 SIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 S+ D S +D DV K + +A + K Sbjct: 234 SVGDYAASELH-ADAGDVLPGFKSVIEYRAETVTIK 268 >gi|291437538|ref|ZP_06576928.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291340433|gb|EFE67389.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 203 Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 76/203 (37%), Gaps = 23/203 (11%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + K ++A ++ E + PE + + + D ++E+ G + Sbjct: 3 SKVGPEVTAYRLKTNVAPYSTLSAGQFEKIKMPERWLSENAVTD------LREIRGKIAV 56 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 + +G ++ + +VD+ L G++ + I ++ V G I P V+V Sbjct: 57 TTLREGSLLQSDMVVDQP------ALQPGQQEVAIMIDAATGVAGKITPGSTVNVYATFE 110 Query: 160 LSERK--PTVTVVLSNIRVIAID-------HNIDSDERVLVGSTATLELTPMQAKALVAA 210 ++++N +V+ + D R T L+ + A+ + A Sbjct: 111 GEREGAAAQSKIIVTNAKVLDVGRLTALEPDEEDRGRRPTDAVPITFALSTIDAQRITYA 170 Query: 211 QSVA-KLSLVLRSI-ADLNPSSS 231 +S A ++ L L + D + S Sbjct: 171 ESFAQRVRLALVAPGGDTSVPDS 193 >gi|210629922|ref|ZP_03296169.1| hypothetical protein COLSTE_00052 [Collinsella stercoris DSM 13279] gi|210160739|gb|EEA91710.1| hypothetical protein COLSTE_00052 [Collinsella stercoris DSM 13279] Length = 258 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 79/226 (34%), Gaps = 19/226 (8%) Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87 E + + + ++V ++ D+ G + + + + Sbjct: 37 QEAERARRETLEQYGGELVSVCVATRDIDPGEQIDDGNAVVTEWVSTLLPAEAVT----- 91 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 ++ ++ G I P+ + +P+GK A ++ AVGG+++ Sbjct: 92 -SLADVAGRTATARIPAHAPLSEAYF---EQRESAVDVPRGKVAVSVASDAEHAVGGVLE 147 Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL 207 D VDV + K L++ VI V TL + P + L Sbjct: 148 RGDLVDVYVQGDALADK------LTDAEVIDTSALASGSGDVQ---WVTLAVRPSAVREL 198 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDS-DVWDVQEEGKEIQIIKAG 252 +AA S ++L + + + S+D+ + D + G E +G Sbjct: 199 LAAASRGMVTLAVPAEQEDGDRDSDDAEEKSDAKTPGDEASAESSG 244 >gi|257784838|ref|YP_003180055.1| SAF domain-containing protein [Atopobium parvulum DSM 20469] gi|257473345|gb|ACV51464.1| SAF domain protein [Atopobium parvulum DSM 20469] Length = 275 Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 82/226 (36%), Gaps = 24/226 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN----PAKFINVLISKGDLA 56 M + I V + AL+A V + E+ E + ++L++ + Sbjct: 1 MTKKTRILISV--LSALLASFCFFAYVQSVRAEAEKSRAEAIQKYGGELTSILVATKQIE 58 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G ++ + + ++ + + +G I + + + G V I G P+ L Sbjct: 59 PGETLSSSNTQVKSWISDLIPEGAITNP------ESVMGRTVSSVIGVGMPVVSLHLRSV 112 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 + +P+ T+ + + + V +T + S+I V Sbjct: 113 ASQI---TIPENLIGLTISHGEKYGLAERLSAGTKLAAYEVTD-----SLITCIASDISV 164 Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 + + D++ + S+ TL LTP Q A+++A + L L Sbjct: 165 L----SDDAEGTLYTSSSVTLGLTPEQVPAVLSAYARGTLRFTLPG 206 >gi|255316487|ref|ZP_05358070.1| hypothetical protein CdifQCD-7_19162 [Clostridium difficile QCD-76w55] Length = 259 Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 77/241 (31%), Gaps = 48/241 (19%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K L+ + +FA + T++ K + V ++ V+ Sbjct: 7 KANILLQFSLFILFAGGVFLF----------------TQSQVKPVAVYQYSRNIPENTVI 50 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GG 120 P++ + I + ++++G ++ + + + L D Sbjct: 51 QKGDYIKTFKPKDILTKSMITNE------KDINGKILTTNVYRSEYAIKNNLEDPAKLDE 104 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-------TVVLSN 173 + + R ++ + + AVGG +K D VD+ V+ + + + Sbjct: 105 FAKIDLSNLRKVSIPVEMKDAVGGNLKKGDRVDLTFVKQGDSKNNDTSDSFTYAKTFMQD 164 Query: 174 IRVIAI-------------DHNIDSDERVLVGST-----ATLELTPMQAKALVAAQSVAK 215 + V + ++E+ V + T+ +T QA+ + A Sbjct: 165 VLVYNVVDDGGKKYVDQTEGTQSLANEKGEVVESGSLSIVTVAVTAQQAEEIYARHKDGD 224 Query: 216 L 216 + Sbjct: 225 I 225 >gi|302558701|ref|ZP_07311043.1| flp pilus assembly protein CpaB [Streptomyces griseoflavus Tu4000] gi|302476319|gb|EFL39412.1| flp pilus assembly protein CpaB [Streptomyces griseoflavus Tu4000] Length = 235 Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 22/214 (10%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + K D+A ++ E + PE + + D+ + + Sbjct: 33 VESKVGPEVTAYRLKTDVAPYTPLSTGQFEKIKMPERWLSKNAVTDLAG------IRDKI 86 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + +G ++ + +VDR L G++ + I ++ V G I P V+V Sbjct: 87 AVTGLREGSLLQSDMIVDRP------ALRPGQQEVAIMIDAATGVAGKITPGSTVNVYAT 140 Query: 158 RSLSERK--PTVTVVLSNIRVIAID-------HNIDSDERVLVGSTATLELTPMQAKALV 208 V+++N RV+ + D T L+ + A+ + Sbjct: 141 FEGEREGDPDQSRVIVTNARVLDVGRLTALRPDENDRGREPTDAVPITFALSAIDAQRIT 200 Query: 209 AAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQE 241 A+S A ++ L L + ++ Sbjct: 201 YAESFAQRVRLALVAPGTDTTVPDSQRTYELAKD 234 >gi|167570106|ref|ZP_02362980.1| Flp pilus assembly protein CpaB family [Burkholderia oklahomensis C6786] Length = 168 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 26/180 (14%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ L G + + L+ P G + + G + I+ Sbjct: 1 PVVVATRALPTGQPIPADALKVQQMPASIA--GAFSNPAL------VTGRIPASDIVAQA 52 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------V 157 P+ +L+ GL+ + G+RA + + ++AVG ++P + VDV + Sbjct: 53 PVLENELM----SGLADQIAPGERAVAIKVDDTNAVGNRLRPGNFVDVFVNMKRESSFGT 108 Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQS 212 + ++LS +RV++ + TA L + Q AL A++ Sbjct: 109 TGSEISQSQARLLLSRVRVLSFGDATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEA 168 >gi|29829798|ref|NP_824432.1| hypothetical protein SAV_3256 [Streptomyces avermitilis MA-4680] gi|29606907|dbj|BAC70967.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 209 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 24/216 (11%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + D+A ++ + E V+ P + + D + ++ G + Sbjct: 5 VNSKVGPEVAAYRLRNDIAPYKELSADQFEKVSMPRRWLSKTAVTD------LAQIRGKI 58 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + KG ++ + +VDR L G++ + I S+ V G I P V++ Sbjct: 59 AVTQLEKGSLLQTDMIVDRP------ALAAGQQEIAIMIDASTGVAGKINPGSRVNIYAT 112 Query: 158 RSL--SERKPTVTVVLSNIRVIAID---------HNIDSDERVLVGSTATLELTPMQAKA 206 + K V++ N RV+ + + T L A+ Sbjct: 113 FKAPSDKGKDQSKVIVENARVLDVGKLTALDPGQSSDQRRRTASEAVPITFALDTADAQR 172 Query: 207 LVAAQSVAK-LSLVLRSIADLNPSSSEDSDVWDVQE 241 + A+S A+ + L L + D ++ Sbjct: 173 VAYAESFAEHVRLALVAGGSGTTVPPGDRSYTLDED 208 >gi|313835706|gb|EFS73420.1| Flp pilus assembly protein CpaB [Propionibacterium acnes HL037PA2] gi|314928377|gb|EFS92208.1| Flp pilus assembly protein CpaB [Propionibacterium acnes HL044PA1] gi|314970229|gb|EFT14327.1| Flp pilus assembly protein CpaB [Propionibacterium acnes HL037PA3] gi|328908042|gb|EGG27801.1| Flp pilus assembly protein CpaB [Propionibacterium sp. P08] Length = 242 Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 98/257 (38%), Gaps = 31/257 (12%) Query: 1 MKLTR---LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 M + L+ ++++ V A+ + R V+ + Q + V +K ++ Sbjct: 1 MNPRQRRGLIYLLIAVVVAIATFLTVTRYVASVNSQV--------GSRVTVYRAKTAISP 52 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 ++ ++LE V P ++ L G + + G I + L+ Sbjct: 53 YTPLSDSVLEPVEVPRRW------TSDSSMVSLSSLRGRRIGFRVEAGTVITRDMLIAPS 106 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-TVVLSNIRV 176 + L +R ++++ + V G +KP D VD+ V + P V+ N RV Sbjct: 107 D------LNPDEREIAINVNSVTGVAGRVKPGDRVDIYAVFADVPGLPKSVRVLTRNTRV 160 Query: 177 IAIDHNIDSDERVLVGST------ATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPS 229 ++I ++ + G T TL LTP A A+ A + AK + LV Sbjct: 161 VSIAGKMNISGQSGNGVTETEVIPVTLALTPNDATAVTYAAAFAKEVRLVALPTDAGANR 220 Query: 230 SSEDSDVWDVQEEGKEI 246 + E ++ G+ + Sbjct: 221 NGEKNEYDASSLGGRAV 237 >gi|307295324|ref|ZP_07575163.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] gi|306878827|gb|EFN10046.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] Length = 301 Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 88/248 (35%), Gaps = 35/248 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEE------VITENPAKFINVLISKGD 54 M+L + + +A+ + + A + ++ + Sbjct: 1 MRLGLKAKLTIGVGLTAATAFLALGVRELRKASAATGENRVTAPAKVAAPTVLLVQAARA 60 Query: 55 LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 + G +T +++ A E+ G + I I + + Sbjct: 61 IRTGETITADMIRNAAGDPARFPQAA--------TSAEVVGKVATRDIAMRALIARDAVG 112 Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPT 166 N L+ +P G RA ++D + AV G+++P D VDV +V ++ + Sbjct: 113 VESN--LAMRVPMGMRAVSIDTTAEIAVAGLVRPGDRVDVQVVYPGADAISGARGAGRSR 170 Query: 167 VTVVLSNIRVIAIDHNIDSDERVL-----------VGSTATLELTPMQAKALVAAQSVAK 215 +L ++V+A+ + + T TL LTP Q AL A+++ Sbjct: 171 AQALLQMVQVLAVGEVVVGARQASGVEGALASPPLPARTVTLALTPEQVSALSLAKNIGA 230 Query: 216 LSLVLRSI 223 L+L LR+ Sbjct: 231 LTLSLRNP 238 >gi|293606492|ref|ZP_06688850.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292815115|gb|EFF74238.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 198 Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 66/204 (32%), Gaps = 24/204 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK---------FINVLIS 51 M + V V LV +A RL + A V+++ Sbjct: 1 MSSLSKIIAGVLLVAGLVLAFLAWRLATHSSAPPASPTPVATAPAPAAPAPVTLHPVVVA 60 Query: 52 KGDLAVGMVVTP-NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 K + G + N+L + + N L+G + RV I GDPI Sbjct: 61 KQAIPAGTRIDAQNMLTVAQWQAAL--------SNSFNTPDPLEGAVARVDIAAGDPIVP 112 Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVT 168 L GL+ L G+RA + + G I P D VDV + + Sbjct: 113 SLLAQ----GLAKQLKPGERAVAIAVDEVIGGGNRIAPGDLVDVFFMVEKGQEISGGQAR 168 Query: 169 VVLSNIRVIAIDHNIDSDERVLVG 192 ++ S +RV+A + Sbjct: 169 LLQSQLRVLAYGKSSVDGPEEKSV 192 >gi|229816461|ref|ZP_04446762.1| hypothetical protein COLINT_03515 [Collinsella intestinalis DSM 13280] gi|229808003|gb|EEP43804.1| hypothetical protein COLINT_03515 [Collinsella intestinalis DSM 13280] Length = 226 Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 88/236 (37%), Gaps = 22/236 (9%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN----PAKFINVLISKGDLAVG 58 + R + + +S V L A ++A V+ H + E+ V ++ ++ G Sbjct: 1 MKRTVRLGLSAVMGLSAALLAWSAVAGAHAEAEQASRRALERYGGDVTRVCVALREIEPG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 ++ ++ V + + + + +M + G++ I P+ + Sbjct: 61 DEISEGNVKVVEWVSSLMPEDALT------SMGDASGLVATARIPAHTPLAKAHFLRDER 114 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 +P+G A ++ AVGG + D VDV + + + L+ V+ Sbjct: 115 ---VVQVPRGTVAISVASDAEHAVGGSLARGDEVDVYVADASVADR------LTRAEVLD 165 Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 D + S TL + + ++AA + +++LVL + ++ + Sbjct: 166 TSVLADGGGDL---SWVTLAVDASAVRDVLAATTRGEVTLVLPGASASREAARSER 218 >gi|156975625|ref|YP_001446532.1| hypothetical protein VIBHAR_03358 [Vibrio harveyi ATCC BAA-1116] gi|156527219|gb|ABU72305.1| hypothetical protein VIBHAR_03358 [Vibrio harveyi ATCC BAA-1116] Length = 204 Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 76/196 (38%), Gaps = 22/196 (11%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVIT------ENPAKFINVLISKGDLAVGMVVT 62 +V + + LV GI ++ H Q ++ E A ++ V +K +L G + Sbjct: 1 MVFALLALLVGGIGIYSHMTAHPQQQNPTVSQSSNSDEPQAHYVQVWRAKSNLERGTPIE 60 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP-IRLEKLVDRGNGGL 121 + ++ + I+ + + L+ I G ++ + + Sbjct: 61 IDDVQKEQMLLNIALEEGINSDIKLDFSPS---TLLSKNIEAGKIVFSEYQVKENDPRYI 117 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTVTV 169 L+ +GK ++ +S + V G I+P +VDV+ V S E + Sbjct: 118 DLLITEGKEPYSLLVSTRNLVKGYIRPGTNVDVLSVGSPKENLADEDTDAIDFSGVNAQL 177 Query: 170 VLSNIRVIAIDHNIDS 185 +L N++V+++ + + Sbjct: 178 ILRNVKVLSVGNTKEP 193 >gi|254429646|ref|ZP_05043353.1| Flp pilus assembly protein CpaB [Alcanivorax sp. DG881] gi|196195815|gb|EDX90774.1| Flp pilus assembly protein CpaB [Alcanivorax sp. DG881] Length = 278 Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 88/245 (35%), Gaps = 25/245 (10%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--------NPAKFINVLISKGDLAVGMV 60 ++ + ALVA I+A+ +S V E A + L VG Sbjct: 1 MLPALAVALVALILALVGLSRDPTPALVVKDEGADTASSTQEAPSYRYWVVTQSLNVGDT 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + L V+ P + A + + G +R G+ + L G Sbjct: 61 LDEESLAVVSSPAPIA--------NVLTADETVVGKELRQFARPGELLSRNHL--EPGGT 110 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV-LSNIRVIAI 179 L LP G RA + + GG+++P D VDVV+ ER +V L NI+V+A+ Sbjct: 111 LPGALPTGFRAVGVAVDDVVMAGGLLQPGDLVDVVVAFRKVERDNPAALVLLRNIQVLAV 170 Query: 180 ------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 + E +T L + + L+ A + L + + D + + Sbjct: 171 KGAMAAASSEQDREAQRRNNTVVLAVPRDKVPPLLLAAEEGSMRLAVVASDDKDTNKEAV 230 Query: 234 SDVWD 238 + D Sbjct: 231 ASASD 235 >gi|116671413|ref|YP_832346.1| hypothetical protein Arth_2867 [Arthrobacter sp. FB24] gi|116611522|gb|ABK04246.1| hypothetical protein Arth_2867 [Arthrobacter sp. FB24] Length = 213 Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 27/219 (12%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 +VV+ + AGI +L T PA + L + DLA G ++ N + Sbjct: 14 LVVALLLCAAAGIAVQQL------------TPAPAHTVTALATARDLAAGTALSGNEVVP 61 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128 V P V G + DV + G + P+ KG I +L+ GL + G Sbjct: 62 VKVPPGMVPSGAVADVSS------IQGKQLAAPLRKGQLISDTQLLGP---GLLAGTKPG 112 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAI-DHNIDSD 186 A + ++ S++ ++ P V++VM + V+ + + V+ + Sbjct: 113 SAAVPLRMADPSSIQ-LVAPGQLVNIVMTNGTDFGKTAESQVLAAAVPVLWTSGQGGQTG 171 Query: 187 ERVLVGST---ATLELTPMQAKALVAAQSVAKLSLVLRS 222 + + G T + P QA+ L + + KL VL Sbjct: 172 QWLGTGETEGLIVVAADPDQARRLAGSSTQGKLFFVLVG 210 >gi|269216235|ref|ZP_06160089.1| Flp pilus assembly protein CpaB [Slackia exigua ATCC 700122] gi|269130494|gb|EEZ61572.1| Flp pilus assembly protein CpaB [Slackia exigua ATCC 700122] Length = 255 Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 76/204 (37%), Gaps = 16/204 (7%) Query: 20 GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79 +L S + E++ + + V ++ D+AVG ++ + + D Sbjct: 2 AAYGNQLESAVADERAEMLERFGGEQVEVRVATRDIAVGERLSDANSTSQLWLSALLPDQ 61 Query: 80 FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139 + D ++ G V PI +G+ + ++ + L +P G A ++ Sbjct: 62 AVID------AGDVAGRSVTTPIFEGEVVCAQRFDETEEKPL--QVPDGMCAVSVPADTL 113 Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI---AIDHNIDSDERVLVGSTAT 196 ++VGG + P VDV + ++ ++ V+ A S S T Sbjct: 114 ASVGGSVAPGALVDVYTS-----SGSSTDLLAQSVLVLSTSASGQASASPAASSPLSWVT 168 Query: 197 LELTPMQAKALVAAQSVAKLSLVL 220 L + P + + VAA +L L Sbjct: 169 LAVAPDRVEEFVAAAQRTELYFTL 192 >gi|148556417|ref|YP_001263999.1| Flp pilus assembly protein CpaB-like protein [Sphingomonas wittichii RW1] gi|148501607|gb|ABQ69861.1| Flp pilus assembly protein CpaB-like protein [Sphingomonas wittichii RW1] Length = 293 Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 84/249 (33%), Gaps = 33/249 (13%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVGMVV 61 + +V +FAL+ I+ R + + I+ + G + Sbjct: 5 RAKITVVAGLLFALLFVILGFRELGRPSPSRPLPVAAIVESGPPAAFAIAARRIETGETL 64 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 +P+++ P+ + E G + PI + + L Sbjct: 65 SPDLVRNGPAPKALQAATA--------SPAEAVGKVATQPIAA--GAAIPRAAIAAEDKL 114 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTVVLSN 173 + +P G RA ++D + AV G+++P D VD+ +V ++ +L Sbjct: 115 ALRVPVGMRAISIDTTSEIAVAGLVRPGDRVDIQVVYPGTDAIAGLRGPGGSQAATLLQM 174 Query: 174 IRVIAIDHNIDSDE-------------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + V+A+ + + TL LTP L A++ + L L Sbjct: 175 VEVLAVGQVVIGSGPANEDKSVSSFESQPPQARNVTLALTPADVSTLSLAKARGAIYLSL 234 Query: 221 RSIADLNPS 229 R+ AD Sbjct: 235 RNPADRELV 243 >gi|119717338|ref|YP_924303.1| SAF domain-containing protein [Nocardioides sp. JS614] gi|119537999|gb|ABL82616.1| SAF domain [Nocardioides sp. JS614] Length = 244 Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 90/240 (37%), Gaps = 28/240 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RL+ + + V AL ++ + + + E+ + ++VL++ +A G Sbjct: 1 MDRRRLLIVAAALVAALGTVLVVVY------ARGADQRAEDRFESVDVLVATQPIAAGET 54 Query: 61 VTP----NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 V + + + + DG + + G + VPI G+ + KL Sbjct: 55 VEAARAADKIGTRSVALRDRLDGALTSLDGH------AGQVALVPIQPGEQLLPAKLGSS 108 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-SLSERKPTVTVVLSNIR 175 +P G+ A +++++ ++ V G + P V V + + ++LS + Sbjct: 109 SEAAAPLPIPPGQMAVSVNLTDAARVSGFLNPGSEVAVFLNGVDQQTGQTFTRLLLSRVT 168 Query: 176 VIAIDHNI-----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 V+ + L + T+ + QA+ ++ A S +L+ L + Sbjct: 169 VLGVGSTAPVATTTTDDTGAQTVEQLPRTLLTIAVDQKQAQKVLFASSNGELAFALLNPD 228 >gi|86147183|ref|ZP_01065499.1| hypothetical protein MED222_18941 [Vibrio sp. MED222] gi|85835067|gb|EAQ53209.1| hypothetical protein MED222_18941 [Vibrio sp. MED222] Length = 262 Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 84/260 (32%), Gaps = 17/260 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++G+ + + G++ P + V G Sbjct: 1 MNSKIILGLAFLAISIGLYGVV----NVPMDTFPIQPEEPIIEVTFKVWKLTHPTVKGQQ 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + + PE + + + + I + + L G+ Sbjct: 57 LKRSDFVIEYLPEARA---ALLGIDRNIELDWNAPQFAVHDIAAYELVDSNMLTSPGDSQ 113 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV-----LSNI 174 L +++ G + + +GG I D VD+ ++ + + + V L+ + Sbjct: 114 YLQAVIRPGFVPYNVTVPGRDVLGGTIAVGDLVDISVLSTPDQNLSSEDTVSDIQHLTMV 173 Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA--QSVAKLSLVLRSIADLNPSSSE 232 ++A +D ST TLE Q ++ Q +A+L++ R IA++ S Sbjct: 174 PLLAQIPVLDMVTSEKAVSTLTLE-KETQVTLILQVTNQQLAQLTVAQR-IAEVAVHKSL 231 Query: 233 DSDVWDVQEEGKEIQIIKAG 252 + D E I +G Sbjct: 232 GKEFSDDLEADSSDIIPSSG 251 >gi|218848027|ref|YP_002454867.1| hypothetical secreted protein [Bacillus cereus G9842] gi|218546158|gb|ACK98551.1| hypothetical secreted protein [Bacillus cereus G9842] Length = 303 Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 84/255 (32%), Gaps = 53/255 (20%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M L I + A+VAG+ + TE+ K + V+++K D+A Sbjct: 1 MNLASKKVIAGTAAIAVVAGVWGYSYMQ----------TESKIKPVKVVVTKQDIAPHTK 50 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T +++ FP + + DG I + KL Sbjct: 51 ITADMIAEKEFPVSGIPPKTALKKEEVLGKWTKDGY----GIAANSYMNSTKLAKEEELT 106 Query: 121 LSSLLP--KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN----- 173 + ++ +G+ A T+ + I ++ G I PN +VD+ + +L K V + N Sbjct: 107 DAGVISLKEGEHAFTLPVDIETSNGNAIVPNTYVDLYLAANLDAEKLGQAVGIQNLEKKF 166 Query: 174 --------------IRVIAIDHNIDSDE------------------RVLVGSTATLELTP 201 +RVI++ +D T+ + Sbjct: 167 ISPTVKYFGLAAKKVRVISVKDGNTTDVFNALPNTENADGSKPSNIDRRQARLYTIAVNK 226 Query: 202 MQAKALVAAQSVAKL 216 + L A+ + + Sbjct: 227 ETLQILNKAKLIGNV 241 >gi|299889217|dbj|BAJ10317.1| hypothetical protein [Streptomyces lavendulae subsp. lavendulae] Length = 233 Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 74/212 (34%), Gaps = 20/212 (9%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + KGD+A ++ E V P+ + D + D + L G + Sbjct: 33 VNSKVGAEVVAYRVKGDIAPYSALSAGQFEEVKVPKRWLSDTAVSD------LGSLQGKI 86 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + KG ++ + VD+ L G++ + I ++ V G I V+++ Sbjct: 87 ALTTLKKGSLLQSDMFVDKP------QLQPGEQEIAIMIDAATGVAGKITSGAKVNIIAT 140 Query: 158 RSLSERKPTVT--VVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAA 210 ++ ++++N RV+ + + T L + + A Sbjct: 141 FKGAKETDPSRSVIIVANARVLGVGKLTALDKDGDKKGPAEAVPITFALNTKDTQRVAYA 200 Query: 211 QSVAK-LSLVLRSIADLNPSSSEDSDVWDVQE 241 +S A+ + L L + + S D + Sbjct: 201 ESFAEHVRLALVAPGTDSAPSPTDRTYTLDGD 232 >gi|228989141|ref|ZP_04149159.1| Hypothetical secreted protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770568|gb|EEM19115.1| Hypothetical secreted protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 303 Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 83/255 (32%), Gaps = 53/255 (20%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M L I + A+VAG+ + TE+ K + V+++K D+A Sbjct: 1 MNLASKKVIAGTAAIAVVAGVWGYSYMQ----------TESKIKPVKVVVTKQDIAPHTK 50 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T +++ FP + DG I + KL Sbjct: 51 ITADMIAEKEFPVSGIPPKTALKKEDVLGKWTKDGY----GIAANSYMNSTKLAKEEELT 106 Query: 121 LSSLLP--KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN----- 173 + ++ +G+ A T+ + I ++ G I PN +VD+ + +L K V + N Sbjct: 107 DAGVISLKEGEYAFTLPVDIETSNGNAIVPNTYVDLYLAANLDAEKLGQAVGIQNLEKKF 166 Query: 174 --------------IRVIAIDHNIDSDE------------------RVLVGSTATLELTP 201 +RVI++ +D T+ + Sbjct: 167 ISPTVKYFGLAAKKVRVISVKDGNTTDVFNALPNTENADGSKPSNIDRRQARLYTIAVNK 226 Query: 202 MQAKALVAAQSVAKL 216 + L A+ + + Sbjct: 227 ETLQTLNKAKLIGNV 241 >gi|194366096|ref|YP_002028706.1| Flp pilus assembly protein CpaB [Stenotrophomonas maltophilia R551-3] gi|194348900|gb|ACF52023.1| Flp pilus assembly protein CpaB [Stenotrophomonas maltophilia R551-3] Length = 345 Score = 85.6 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 53/271 (19%), Positives = 84/271 (30%), Gaps = 52/271 (19%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 KLTR+ + + G+ L+A + M P+ T + ++ A+ I V+ S L G + Sbjct: 3 KLTRIAAVALIGLAVLLALVAFMIGRKPNAPATVAPVAQSEAQAITVVESVARLPAGEPI 62 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T N L ++ + G + I +G I L G Sbjct: 63 TANGLRLAQRTAPVA--------GAATSIASVVGKVPVQDIAEGTAISSSALAQ----GF 110 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----------------VRSLSERK 164 S L G+RA + + G I P D VDV + R L R Sbjct: 111 SLQLRPGERALAVPVDELVGAGNRILPGDFVDVFLNLRNAQPNASGPGEAAQTRLLLSRL 170 Query: 165 PTVTVVLSNIRVIAIDHNIDSDERVL-----------------------VGSTATLELTP 201 ++ +I D ++ +A L + Sbjct: 171 RVLSYGQQDIAPATSDAVASNEGDNRNDPRAADITGSGSSHTTSSETTQPARSAVLAVPV 230 Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 A L+ KL L LR+ AD Sbjct: 231 ADANRLLLGAQQGKLFLALRNPADTGLPDLA 261 >gi|254522254|ref|ZP_05134309.1| Flp pilus assembly protein CpaB [Stenotrophomonas sp. SKA14] gi|219719845|gb|EED38370.1| Flp pilus assembly protein CpaB [Stenotrophomonas sp. SKA14] Length = 343 Score = 85.2 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 77/269 (28%), Gaps = 50/269 (18%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 KLTR+ + + G+ L+A I M P + + I V+ + L G + Sbjct: 3 KLTRIAAVALIGLAVLLAVIALMIGRKPDAPVHVAPVASADPQAITVVEAVARLPAGEPI 62 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T N L +M + G + I +G I L G Sbjct: 63 TANGLRLAQRTTPVA--------GAATSMSTVVGKVPVQDIAEGSAISTSALAQ----GF 110 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------------------------ 157 S L G+RA + + G I P D VDV + Sbjct: 111 SLQLRPGERALAVPVDELVGAGNRILPGDFVDVFLNLRTAQPSAGGPGEAAQARLLLSRL 170 Query: 158 --------------RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203 + + I + + SDE +A L + Sbjct: 171 RVLSYGQQDIAPNPGDTAASTDGSERNDARAADITGNSHGASDETRQPARSAVLAVPVAD 230 Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSE 232 A L+ KL L LR+ AD Sbjct: 231 ANRLLLGAQQGKLFLALRNPADTGLPDLA 259 >gi|228949326|ref|ZP_04111589.1| Hypothetical secreted protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810309|gb|EEM56667.1| Hypothetical secreted protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 303 Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 83/255 (32%), Gaps = 53/255 (20%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M L I + A+VAG+ + TE+ K + V+++K D+A Sbjct: 1 MNLASKKVIAGTAAIAVVAGVWGYSYMQ----------TESKIKPVKVVVTKQDIAPHTK 50 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T +++ FP + DG I + KL Sbjct: 51 ITADMIAEKEFPVSGIPPKTALKKEDVLGKWTKDGY----GIAANSYMNSTKLAKEEELT 106 Query: 121 LSSLLP--KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN----- 173 + ++ +G+ A T+ + I ++ G I PN +VD+ + +L K V + N Sbjct: 107 DAGVISLKEGEYAFTLPVDIETSNGNAIVPNTYVDLYLAANLDAEKLGQAVGIQNLEKKF 166 Query: 174 --------------IRVIAIDHNIDSDE------------------RVLVGSTATLELTP 201 +RVI++ +D T+ + Sbjct: 167 ISPTVKYFGLAAKKVRVISVKDGNTTDVFNALPNTENADGSKPSNIDRRQARLYTIAVNK 226 Query: 202 MQAKALVAAQSVAKL 216 + L A+ + + Sbjct: 227 ETLQTLNKAKLIGNV 241 >gi|190574778|ref|YP_001972623.1| putative transmembrane fimbriae assembly protein [Stenotrophomonas maltophilia K279a] gi|190012700|emb|CAQ46328.1| putative transmembrane fimbriae assembly protein [Stenotrophomonas maltophilia K279a] Length = 345 Score = 84.8 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 81/271 (29%), Gaps = 52/271 (19%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 KLTR+ + + G+ L+A I M T + ++ A+ I V+ + L G + Sbjct: 3 KLTRIAAVALIGLAVLLAVIALMIGRKQAAPATVAPVAQSEAQAITVVEAVARLPAGEPI 62 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + N + ++ + G + I +G I L G Sbjct: 63 SANGVRLAQRTTPVA--------GAATSISAVVGKVPVQDIAEGTAISSGALAQ----GF 110 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL---------- 171 S L G+RA + + G I P D VDV + ++ + Sbjct: 111 SLQLRPGERALAIPVDELVGAGNRILPGDFVDVFLNLRNAQPNASGPAEAAQTRLLLSRL 170 Query: 172 -------SNIRVIAIDHNIDSDERVL-----------------------VGSTATLELTP 201 +I + D ++ +A L + Sbjct: 171 RVLSYGQQDIAPVTGDAVAGNEGDTRNDPRAADITGNGSNHGSGNETTQPARSAVLAVPV 230 Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 A L+ KL L LR+ AD Sbjct: 231 ADANRLLLGAQQGKLFLALRNPADTGQPDLA 261 >gi|221070073|ref|ZP_03546178.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1] gi|220715096|gb|EED70464.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1] Length = 329 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 87/249 (34%), Gaps = 33/249 (13%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE------NPAKFINVLISKGDLA 56 + + I V + A+ + + Q + + P ++V+++ + Sbjct: 1 MVNVAKIAVGVLLAVALALGVYGWMLARAPQAPDPQAQASTSDSQPNASLSVVVAAQAVP 60 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G + L+ + P + DG ++ Q G + V I KG P+ ++V Sbjct: 61 AGQALKAEDLQLMQLPAK--PDGAYGEI------QAAIGAVPAVDIPKGAPVFQGQMV-- 110 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSN 173 GL+ L +G+RA + + S G I+P D VDV + ++LS Sbjct: 111 --TGLALKLSEGERAVAVKVDESIGAGNRIRPGDFVDVFFALRRDGNEIDQSQARLLLSR 168 Query: 174 IRVIAIDHNI------------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 RV+A TA L + + L+ S L L LR Sbjct: 169 KRVLAYGSASVDAVTTAEKTEGKQANGPDNARTAVLAVPVAEVNQLLLGGSSGSLLLALR 228 Query: 222 SIADLNPSS 230 + D+ Sbjct: 229 NPTDMTEPD 237 >gi|291447356|ref|ZP_06586746.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291350303|gb|EFE77207.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 207 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 76/214 (35%), Gaps = 22/214 (10%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + K ++A + E + P+ + + + D ++E++ + Sbjct: 5 VNSKVGPEVTAYQLKTNVAPYTALNSGQFEKIKMPKRWLSENAVTD------LREVESKI 58 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + +G ++ + +V + L G++ + I S+ V G I P V++ Sbjct: 59 AVTELRQGSLLQSDMMVRKPE------LRAGEQEIAIMIDASTGVAGKITPGATVNIYAT 112 Query: 158 RSLSERK--PTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALV 208 + ++ V++SN +V+ + D R T L + + + Sbjct: 113 FAGEQQGDPAQSKVIVSNAKVLDVGELTALDPSADDRGTRATEAVPITFALNTLDTQRVA 172 Query: 209 AAQSVAK-LSLVLRSIADLNPSSSEDSDVWDVQE 241 A+S A+ + L L + D ++ Sbjct: 173 YAESFAEHVRLALVAPGSDGIIRPGDRTYTLDKD 206 >gi|218708106|ref|YP_002415727.1| hypothetical protein VS_0018 [Vibrio splendidus LGP32] gi|218321125|emb|CAV17075.1| Conserved hypothetical protein; putative exported protein, CpaB [Vibrio splendidus LGP32] Length = 262 Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 86/260 (33%), Gaps = 17/260 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++G+ + + G++ P + V G Sbjct: 1 MNSKIILGLAFLAISIGLYGVV----NVPMDTFPVQPEEPIIEVTFKVWKLTHPAVKGQQ 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + + PE + + Q + D I + + L L G+ Sbjct: 57 LKRSDFVIEYLPEARA---ALLGIDQNIELDWNDPQFAVHDIAAYELVDLNMLTSPGDSQ 113 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV-----LSNI 174 L +++ G + + +GG I D VD+ ++ + + + V L+ + Sbjct: 114 YLQAVIRPGFVPYNVTVPGRDVLGGTIAVGDLVDISVLSTPDQNLSSEDTVSDIQHLTMV 173 Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA--QSVAKLSLVLRSIADLNPSSSE 232 ++A +D ST TLE Q ++ Q +A+L++ R IA++ S Sbjct: 174 PLLAQIPVLDMVTSEKAVSTLTLE-KETQVTLILQVTNQQLAQLTVAQR-IAEVAVHKSL 231 Query: 233 DSDVWDVQEEGKEIQIIKAG 252 + D E I +G Sbjct: 232 GKEFSDDLEADSSDIIPSSG 251 >gi|310830505|ref|YP_003965606.1| hypothetical protein PPSC2_p0144 [Paenibacillus polymyxa SC2] gi|309249972|gb|ADO59538.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2] Length = 273 Score = 84.4 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 88/270 (32%), Gaps = 51/270 (18%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +++ + + + + + M + + + V + DL V Sbjct: 1 MKKKKILILALQLLLLIGTAVGFMAYTNG------------ELQPVKVYVFNKDLNVNHQ 48 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 +T ++ V+ P+ V F + ++ V + G I +++ D+G Sbjct: 49 ITAADIKEVSVPQSGVTQDFALEP------KQFLNKYVGTEVYAGSFIYKKQIKDKGQLD 102 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---SLSERKP-----TVTVVL 171 S+ R ++ IS GG +K D VD+V ++ L Sbjct: 103 PFKSMDLTKYRKISIPISYVEGFGGNVKRGDAVDLVFTGVGKKKDDKGTEQSFQYSKAFL 162 Query: 172 SNIRVIAI-----------------------DHNIDSDERVLVGSTATLELTPMQAKALV 208 N+ + + ID+ + TL +T QA+ + Sbjct: 163 QNVLIYNVTTSDGFEFKDHSTTDLTKTSGQSGEKIDTSANSDELAVVTLAVTLDQAEEIT 222 Query: 209 AAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 A + + LV R AD + + D Sbjct: 223 ARMNAGNVRLVSR-FADNESYETLGFVLGD 251 >gi|221195348|ref|ZP_03568403.1| SAF domain protein [Atopobium rimae ATCC 49626] gi|221184535|gb|EEE16927.1| SAF domain protein [Atopobium rimae ATCC 49626] Length = 262 Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 89/231 (38%), Gaps = 30/231 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN----PAKFINVLISKGDLAVG 58 ++ V+SG AL+A + + + + E+ E + +N++++ + G Sbjct: 1 MSHRFRFVLSGACALLAVLCCIVYGNQIKAEAEQSRAEVIERYGGEVVNLVVATKPIEAG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 ++ + + ++ + +G + ++ G V +PI G P+ ++ Sbjct: 61 DTISSSNTQVKSWVSDLAPEGSFTNAD------DIMGKQVTIPISAGTPLTK---LNFRT 111 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 + +PKG ++ + + G + + +++ IR+++ Sbjct: 112 NETTVTVPKGLVGISISHGEKTGLVGKVAAGTT---LAAYEMTDHG---------IRLLS 159 Query: 179 IDHNIDSDERVLVG---STATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 + SD V + T+ + P ++++A++ L LV+ D Sbjct: 160 TQITLLSDTGESVYISSTPLTVGVLPKDMTSILSAEAKGTLRLVV--PGDE 208 >gi|237733157|ref|ZP_04563638.1| predicted protein [Mollicutes bacterium D7] gi|229383701|gb|EEO33792.1| predicted protein [Coprobacillus sp. D7] Length = 229 Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 29/218 (13%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R+ I++ +++G + M V VL++ D+ + Sbjct: 5 SKRISLIIIIVAGLILSGSLFMIFVGN---------------TTEVLVATQDVKANTKIK 49 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 ++ ++ D ++ ++ +++ G + KG I + S Sbjct: 50 ESMFTTERVDTASLPDNYLS----ADSAKDVVGYYTYIGFTKGSVISKSNIATSAKK-AS 104 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 + KGK T+ I+ D V++++ + V NI V I Sbjct: 105 GAIEKGKTLLTISAENLPTG---IQSGDKVNIIIGANTDSGNKVVLTY-QNIDVSNI--- 157 Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 DE + G + +TP Q++ +V A+ +LS+ L Sbjct: 158 YVDDEGSITGLEVS--VTPEQSQKIVYAKLNGELSISL 193 >gi|258627505|ref|ZP_05722286.1| Flp pilus assembly protein CpaB [Vibrio mimicus VM603] gi|258580311|gb|EEW05279.1| Flp pilus assembly protein CpaB [Vibrio mimicus VM603] Length = 112 Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%) Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQA 204 + P + VDV+ S S+ VL +I+V+A+D S E + ++ TLE+TP QA Sbjct: 1 MLPGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAVTLEVTPEQA 60 Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 + L++AQS ++ L LR+ + + + IIK Sbjct: 61 EKLLSAQSKGEIQLTLRNPHEPEEKVAVTRRYVA-----PSVTIIKG 102 >gi|258623895|ref|ZP_05718848.1| hypothetical protein VMB_01490 [Vibrio mimicus VM603] gi|258583689|gb|EEW08485.1| hypothetical protein VMB_01490 [Vibrio mimicus VM603] Length = 259 Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 81/234 (34%), Gaps = 21/234 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + +V +F+ + + S Q +++ E K + +L+ D + Sbjct: 1 MNRNIIFLLVAVTIFSTLYYLQDQLFSSEPETQAPQIVEE---KKVQILVLSSDKQKSQL 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + E V E + + G R +L G P++ + + G+ Sbjct: 58 IDKKDFEVVEINESTFNESGDERREDIIIRP---GARYRENLLNGQPLKNSHISNVGDSD 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGM-IKPNDHV----------DVVMVRSLSERKPTVT 168 L + + + ++ S + + ++P D V +++ T Sbjct: 115 FLLLSIHQDEVPYYYEVKSSGILESVPLQPGDLVSFVSTTSSESNLLQTGYQDVGNLTSK 174 Query: 169 VVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 V++SN R+I + D + + + + L L AQ + +S++ Sbjct: 175 VIISNARIIQVIKGDLVEGKETNDDIKHSLVIALKVQDVLRLEMAQKIGDVSII 228 >gi|254393097|ref|ZP_05008257.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|197706744|gb|EDY52556.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] Length = 205 Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 22/216 (10%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 D+A + P E VA P + + D + + G + Sbjct: 2 NSKVGPEATAYRLASDVAPYTALRPGQFEKVAVPRRWLPRTAVTD------LSTVRGKIA 55 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV- 157 + KG ++ + +V R L G++ + I ++ V G I P D V++ Sbjct: 56 VTELRKGSLLQDDMIVKRPE------LAPGEQEIAIMIDAATGVAGKITPGDLVNIFATF 109 Query: 158 -RSLSERKPTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALVA 209 ++++N +VI + D R+ T L A+ + Sbjct: 110 AGKAEGDPDQSRIIVTNAKVIDVGRLTPLDPRRDDRRSRMREAVPITFALGTKDAQRVAH 169 Query: 210 AQSVAK-LSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 A+S A+ + L L + + DS ++ + Sbjct: 170 AESFAEHVRLALLAKGSPSTLRPGDSTYTLDEDRSR 205 >gi|262173895|ref|ZP_06041572.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451] gi|261891253|gb|EEY37240.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451] Length = 259 Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 81/234 (34%), Gaps = 21/234 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + +V +F+ + + S Q +++ E K + +L+ D + Sbjct: 1 MNRNIIFLLVAVTIFSTLYYLQDQLFSSEPETQAPQIVEE---KKVQILVLSSDKQKSQL 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + E V E + + G R +L G P++ + + G+ Sbjct: 58 IDKKDFEVVEINESTFNESGDERREDIIIRP---GARYRENLLNGQPLKNSHISNVGDSD 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGM-IKPNDHV----------DVVMVRSLSERKPTVT 168 L + + + ++ S + + ++P D V +++ T Sbjct: 115 FLLLSIHQDEVPYYYEVKSSGILESVPLQPGDLVSFVSTTSSESNLLQTGYQDIGNLTSK 174 Query: 169 VVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 V++SN R+I + D + + + + L L AQ + +S++ Sbjct: 175 VIISNARIIQVIKGDLIEGKEANDDIKHSLVIALKVQDVLRLEMAQKIGDVSII 228 >gi|225389628|ref|ZP_03759352.1| hypothetical protein CLOSTASPAR_03376 [Clostridium asparagiforme DSM 15981] gi|225044308|gb|EEG54554.1| hypothetical protein CLOSTASPAR_03376 [Clostridium asparagiforme DSM 15981] Length = 281 Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 51/274 (18%), Positives = 104/274 (37%), Gaps = 41/274 (14%) Query: 1 MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MKL R + ++S V A V +A+ I ++ + G Sbjct: 3 MKLNNRFIFGILSLVLAAVIAFVAL-----------PTIARQTNGKAEIVRITQPVLKGE 51 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 +T + E V N+ ++ +++G+ V + +GD I K+ Sbjct: 52 KITSDNAEVVEVGGYNLPSNVAH------SLSDVEGLYVTADLAEGDYILTSKVSSVPVS 105 Query: 120 GLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 +L +P GK A +M + +++S + ++PND + + +E P L ++V Sbjct: 106 SDVALNDIPSGKVAISMTVKTLASGLSDKLQPNDIIRIYHFLETAEEVPE----LRFVKV 161 Query: 177 IAIDHN----------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +++ + DE +T T+ TP QA+ + ++ + L S + Sbjct: 162 LSVTDSDGVNVDNTKEPTEDEERQQSATITVLATPEQARIITEMENDGVAHVALISRNND 221 Query: 227 NPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGE 260 + + + K +Q I + +DGE Sbjct: 222 QLAE------ELLAAQDKTLQEIYFPETLTEDGE 249 >gi|258620804|ref|ZP_05715839.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258587002|gb|EEW11716.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 259 Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 81/234 (34%), Gaps = 21/234 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + +V +F+ + + S Q +++ E K + +L+ D + Sbjct: 1 MNRNIIFLLVAVTIFSTLYYLQDQLFSSEPETQAPQIVEE---KKVQILVLSSDKQKSQL 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + E V E + + G R +L G P++ + + G+ Sbjct: 58 IDKKDFEVVEINESTFNESGDERREDIIIRP---GARYRENLLNGQPLKNSHISNVGDSD 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGM-IKPNDHV----------DVVMVRSLSERKPTVT 168 L + + + ++ S + + ++P D V +++ T Sbjct: 115 FLLLSIHQDEVPYYYEVKSSGILESVPLQPGDLVSFVSTTSSESNLLQTGYQDVGNLTSK 174 Query: 169 VVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 V++SN R+I + D + + + + L L AQ + +S++ Sbjct: 175 VIISNARIIQVIKGDLIEGKEANDDIKHSLVIALKVQDVLRLEMAQKIGDVSII 228 >gi|256827719|ref|YP_003151678.1| SAF domain-containing protein [Cryptobacterium curtum DSM 15641] gi|256583862|gb|ACU94996.1| SAF domain-containing protein [Cryptobacterium curtum DSM 15641] Length = 210 Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 82/228 (35%), Gaps = 23/228 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPH--HVQTEEVITENPAKFINVLISKGDLAVG 58 M+ ++ I + + A Q +E ++ + V ++ D+A G Sbjct: 1 MRRKGMLAISLLCGLICALCVSAYLQAEQARFQAQRDEALSRYGGDQVQVCVATRDIAPG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + +E ++ E + V +++G P+ G+ I + + Sbjct: 61 ETYSSANVELRSWIAELSPRQAVGTVA------DIEGKQAAGPVSSGEVITTVRCA---D 111 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 + +P GK+A ++ + S AVGG ++ V V S L + +V+A Sbjct: 112 NTAAIQVPAGKQAVSIAVESSQAVGGSLEAG-----VQVSVYSASSSGSVAYLCDAQVLA 166 Query: 179 IDHNIDSDERVLVGSTATLELTPMQA-KALVAAQSVAKLSLVLRSIAD 225 TL + P Q + + AA+ + + L L + + Sbjct: 167 AGT------YSAGRMWVTLAVDPAQVQEVIAAARDSSSVYLTLPAEGE 208 >gi|167771223|ref|ZP_02443276.1| hypothetical protein ANACOL_02581 [Anaerotruncus colihominis DSM 17241] gi|167666642|gb|EDS10772.1| hypothetical protein ANACOL_02581 [Anaerotruncus colihominis DSM 17241] Length = 279 Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 91/257 (35%), Gaps = 35/257 (13%) Query: 1 MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MKL R + ++S + A V +A+ I ++ + G Sbjct: 1 MKLNNRFIFGILSLLLAAVIAFVAL-----------PTIARQTNGKEEIVRITQPVLKGE 49 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 ++ E V N+ + +++G+ + GD I K+ Sbjct: 50 QISSENAEVVEVGGYNLPSNIAHQ------LSDVNGLYATADLAVGDYILTSKISSVPVS 103 Query: 120 GLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 +L +P GK A ++ + +++S + ++P D + + + P L ++V Sbjct: 104 SDVALNSIPSGKVAISLTVKTLASGLSDKLQPGDIIRIYHFLDTAAEVPE----LRFVKV 159 Query: 177 IAIDHN----------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +++ + DE +T T+ +P QAK + ++ + L S + Sbjct: 160 LSVTDSDGINVDNAKEPTEDEEKQQSATITVLASPEQAKIITGLENDGVAHVALISRNND 219 Query: 227 NPSSSEDSDVWDVQEEG 243 + ++ +E Sbjct: 220 KLADELLAEQDKTLQEI 236 >gi|262164948|ref|ZP_06032686.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223] gi|262027328|gb|EEY45995.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223] Length = 259 Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 81/234 (34%), Gaps = 21/234 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + +V +F+ + + S Q +++ E K + +L+ D + Sbjct: 1 MNRNIIFLLVAVTIFSTLYYLQDQLFSSEPETQAPQIVEE---KKVQILVLSSDKQKSQL 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + E V E + + G R +L G P++ + + G+ Sbjct: 58 IDKKDFEVVEINESTFNESGDERREDIIIRP---GARYRENLLNGQPLKNSHISNVGDSD 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGM-IKPNDHV----------DVVMVRSLSERKPTVT 168 L + + + ++ S + + ++P D V +++ T Sbjct: 115 FLLLSIHQDEVPYYYEVKSSGILESVPLQPGDLVSFVSTTSSESNLLQTGYQDVGNLTSK 174 Query: 169 VVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 V++SN R+I + D + + + + L L AQ + +S++ Sbjct: 175 VIISNARIIQVIKGDLIERKEANDDIKHSLVIALKVQDVLRLEMAQKIGDVSII 228 >gi|283795336|ref|ZP_06344489.1| putative Flp pilus assembly protein CpaB [Clostridium sp. M62/1] gi|323484181|ref|ZP_08089551.1| hypothetical protein HMPREF9474_01302 [Clostridium symbiosum WAL-14163] gi|291076992|gb|EFE14356.1| putative Flp pilus assembly protein CpaB [Clostridium sp. M62/1] gi|323402623|gb|EGA94951.1| hypothetical protein HMPREF9474_01302 [Clostridium symbiosum WAL-14163] Length = 279 Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 91/257 (35%), Gaps = 35/257 (13%) Query: 1 MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MKL R + ++S + A V +A+ I ++ + G Sbjct: 1 MKLNNRFIFGILSLLLAAVIAFVAL-----------PTIARQTNGKEEIVRITQPVLKGE 49 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 ++ E V N+ + +++G+ + GD I K+ Sbjct: 50 QISSENAEVVEVGGYNLPSNIAHQ------LSDVNGLYATADLAVGDYILTSKISSVPVS 103 Query: 120 GLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 +L +P GK A ++ + +++S + ++P D + + + P L ++V Sbjct: 104 SDVALNSIPSGKVAISLTVKTLASGLSDKLQPGDIIRIYHFLDTAAEVPE----LRFVKV 159 Query: 177 IAIDHN----------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +++ + DE +T T+ +P QAK + ++ + L S + Sbjct: 160 LSVTDSDGINVDNAKEPTEDEEKQQSATITVLASPEQAKIITGLENDGVAHVALISRNND 219 Query: 227 NPSSSEDSDVWDVQEEG 243 + ++ +E Sbjct: 220 KLADELLAEQDKTLQEI 236 >gi|83589202|ref|YP_429211.1| Flp pilus assembly CpaB [Moorella thermoacetica ATCC 39073] gi|83572116|gb|ABC18668.1| Flp pilus assembly CpaB [Moorella thermoacetica ATCC 39073] Length = 229 Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 46/233 (19%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 ++ I+ A+ +GI R +S H V++ ++ + P Sbjct: 21 ILAIIFGLAVAVASGIYYQRYISTHQA------------MTQVIVPAHNINAYTQIKPGD 68 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 L W P V G +L G + + +G+ +RLE++ + Sbjct: 69 LTWRQVPVGAVEPGTARKPD------DLVGKVALAELYQGEQVRLERVGEVS-------- 114 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA------- 178 K+ ++I ++ + GG P D VDV ++ SN R++ Sbjct: 115 TDDKQVVAVNIDLARSGGGYFSPGDLVDVYFA---ETENVPGAILASNARLLQLVDAQGN 171 Query: 179 ----------IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + S + + A L ++P + + +VL Sbjct: 172 PITLNQQGGLLQQASQSAQAPRTPAVAVLAVSPADIPQVTRGAANGSRGIVLV 224 >gi|228969168|ref|ZP_04130064.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228790514|gb|EEM38219.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto str. T04001] gi|326943829|gb|AEA19719.1| hypothetical protein CT43_P72025 [Bacillus thuringiensis serovar chinensis CT-43] Length = 269 Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 81/250 (32%), Gaps = 48/250 (19%) Query: 1 MKLT---RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK + + I ++ LV I+ E + V +K D+ Sbjct: 1 MKKKSTPKKLAITLAASIGLVVAIVGY----------ENYAVSSKVNLQKVYFTKVDIPP 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 +T ++L+ ++ I + + ++G +++ + K+V + Sbjct: 51 RTKITKDMLQVREVSNSSIPPNAIKNPNDIVGKYTVNG----FGLVENSYVFKNKVVSKD 106 Query: 118 NGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV------ 169 +++ L + A + + I ++ G I P HVD+ ++ ++ V Sbjct: 107 ELPDAAILNLKPSEVAFPLLVDIETSSGNSIIPESHVDLYFKGTVKDKDEKGEVVEKPIF 166 Query: 170 --VLSNIRVIAI---------------------DHNIDSDERVLVGSTATLELTPMQAKA 206 + ++RV A+ D + + + T + + Sbjct: 167 GRIAKHVRVTAVKDSNAANVFDPATINVEGSYQDSLKEEAKNRPMAKIYTFAVNEEENTL 226 Query: 207 LVAAQSVAKL 216 L + K+ Sbjct: 227 LNQGTLIGKI 236 >gi|167836795|ref|ZP_02463678.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis MSMB43] Length = 174 Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 21/179 (11%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + V+ A++ G+ A L + V+++ L G + + L Sbjct: 8 IIAVLLIGIAILLGLYAWVLGRKPAPVAPAAAPAAATAMVPVVVAARALPAGQPIPADAL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P + G + I+ P+ +L+ GL+ + Sbjct: 68 KVQQTPTPIA--------GAFPNPTLVTGRIPASDIVAQAPVLESELM----SGLADQIA 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRV 176 G+RA + + ++AVG ++P + VDV + + ++LS +RV Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGAEIAQTQARLLLSRVRV 174 >gi|326204373|ref|ZP_08194231.1| SAF domain protein [Clostridium papyrosolvens DSM 2782] gi|325985405|gb|EGD46243.1| SAF domain protein [Clostridium papyrosolvens DSM 2782] Length = 241 Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 88/254 (34%), Gaps = 24/254 (9%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 RL+ V + + A + + K + VL + + ++ Sbjct: 3 KRLVIKTVLICIGIFIILSATAWYFIFNTYKLDTE-----KNVTVLAASTKIDENTIINE 57 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 +++ + + D+ E G I +GD I L+ + S Sbjct: 58 SMIRKKTVKASAATENMVKDIS------ECTGSKSTGLIKEGDYIYRYNLISK-----SK 106 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV-IAIDHN 182 L RA + +I ++K VD+++ + +P +VLS +RV + D + Sbjct: 107 LYADDIRAIVLPATIEDRAANLVKKGSLVDIIVQPKEASGRP--QIVLSKVRVDMVFDDS 164 Query: 183 IDSDERVLVGST---ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 + E VGS L L Q + +A+ LS L D S+++ V Sbjct: 165 GINTEGSEVGSKKGFIKLLLNSNQRAKIYSARLAGTLSYEL--YCDETQLPSKENYVIPT 222 Query: 240 QEEGKEIQIIKAGV 253 + IK G+ Sbjct: 223 KTNNNISDEIKNGI 236 >gi|317133732|ref|YP_004089643.1| hypothetical protein Rumal_3294 [Ruminococcus albus 7] gi|315450194|gb|ADU23757.1| hypothetical protein Rumal_3294 [Ruminococcus albus 7] Length = 253 Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 74/226 (32%), Gaps = 32/226 (14%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 + ++++ + A+V G + + + + + D G + Sbjct: 6 KITILLILAVISAIVTGTLIYKYCNSTKGF--------------IYVFNDDYKAGAKIEK 51 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV------PILKGDPIRLEKLVDRG 117 ++L + ++ + G + E +V ++K P+ L L Sbjct: 52 SMLSPMKVDDQIIKTGQKGGLESYYITGENYSKVVERNEYLLNDVVKNQPLTLVDLAMTS 111 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + L A T+ IS ++AV ++ V++ ++ N+R+I Sbjct: 112 GSSIERSLSGNGMAVTIPISGTAAVTDELRVGSVVNIYSS-----DASGTKLLFENMRII 166 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 A S T E +P L+ A + KL L S Sbjct: 167 A-------RNNENSVSKVTFETSPDDTLDLINAANNKKLYFSLVSP 205 >gi|288870575|ref|ZP_06114611.2| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479] gi|288866630|gb|EFC98928.1| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479] Length = 275 Score = 82.1 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 78/228 (34%), Gaps = 25/228 (10%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 I ++ + G ++T +E N+ + +++ Sbjct: 26 ALPTIARQTNGKTEIVRVSKPVLKGAIITDKNVELAEVGSYNLPANIAR------STEDV 79 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDI-SISSAVGGMIKPND 150 G +++GD I K+ +L +P G+ A ++ + +++S + ++ D Sbjct: 80 VGKYAVSDLMEGDYILSSKISALPLTSDIALNDIPSGRVAISLSVKTLASGLSDKLQAGD 139 Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAID----------HNIDSDERVLVGSTATLELT 200 V + + P L +RV+++ DE +T T+ T Sbjct: 140 IVRIYHFLETAREIPE----LRFVRVLSVTGADGTNIDNTAEPAEDEEKQQSATVTVMAT 195 Query: 201 PMQAKALVAAQSVAKLSLVL--RSIADLNPSSSEDSDVWDVQEEGKEI 246 P QA+ + ++ + L R+ +L + D E + Sbjct: 196 PEQARIITELENDGVAHVALISRNNEELAAELLAEQDQMLSDLESPAL 243 >gi|261251282|ref|ZP_05943856.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] gi|260938155|gb|EEX94143.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] Length = 258 Score = 81.7 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 93/266 (34%), Gaps = 25/266 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M T ++ +V +F++ I L S Q + + +E + VL+ G+ G + Sbjct: 1 MNRTIILVLVTLVIFSIFIFINNTYLSSTGEEQEKVIKSE---PKVAVLVVSGEAKKGQI 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + +I + V + + G L + + G+ I E + + G+ Sbjct: 58 IKSSIHKSELVNLSQVESVDYTPKDEIHIEP---GALFKRDLNPGELISQEDISNPGDRD 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGM-IKPNDHVDVVMV----------RSLSERKPTVT 168 + + KG+ ++ V + + P D V V Sbjct: 115 YMFLSVNKGELPYFYHVTGLGIVQTLSLYPGDKVSFVSTTSSETNLLEDGYGDVGGLVSR 174 Query: 169 VVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V++S RV+ + + + D+ + + + L L AQ V +++V A+ Sbjct: 175 VIISGARVLQVIKGEEDEDAQDAEDKQYSIVVALRMRDVLKLEMAQKVGDVNIV---PAE 231 Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKA 251 + D+ E ++ ++ Sbjct: 232 IENRYLSIRS-SDLLETQFGVRELRG 256 >gi|89100212|ref|ZP_01173079.1| hypothetical protein B14911_20170 [Bacillus sp. NRRL B-14911] gi|89085062|gb|EAR64196.1| hypothetical protein B14911_20170 [Bacillus sp. NRRL B-14911] Length = 274 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 79/211 (37%), Gaps = 26/211 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K ++ I+VS + A AG ++ VS + + V ++ D+ ++ Sbjct: 5 KRRAIIFILVSVLLAAAAGFFVLQKVSALNSEL--------GGMTEVYVAASDIPSRTLI 56 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 ++ V P V + + +V ++L ++ VP+ D I + + Sbjct: 57 EREQVKTVEIPNRYVNNSHVTNV------EDLINKVLVVPVAAEDVITKTMI-----KPV 105 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 S++ + R + S ++ D VD+++ ++ KP + ++ V A+ Sbjct: 106 SNVRDENNRLVMIPQSDKVNFDQQLEALDRVDIIVSHKFND-KPVTETFMKDVPVAAV-- 162 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQS 212 + +E+ A ++ Q+ Sbjct: 163 ----LKSNKKFKGIVVEIADKDAPQVIHMQN 189 >gi|238793621|ref|ZP_04637244.1| tight adherance operon protein [Yersinia intermedia ATCC 29909] gi|238727036|gb|EEQ18567.1| tight adherance operon protein [Yersinia intermedia ATCC 29909] Length = 277 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 94/282 (33%), Gaps = 41/282 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS--KGDLAVG 58 M L+ + V AGI+ + K + ++++ DL+ G Sbjct: 1 MNRKFLLLFSILIVAIGAAGIMIN--TKHDEHTPYNFVDSKKEKEVEIVLAQSTHDLSSG 58 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 ++T N V + + +++ L++ +L G I L + Sbjct: 59 TLLTQNDYALKVI---MVPESSELIKSNISGKTDINSHLLKTNLLSGSYITPAVLASPDS 115 Query: 119 GGLSSL-LPKGKRAATMDISISSA-VGGMIKPND------HV------------DVVMVR 158 S L L KG+ +I+ + + ++ D V V+ + Sbjct: 116 NEFSYLNLKKGEVIYKFNINNKNGYLLDTLQVGDSLSFQLRVLETDKNKGMSSGTVINTK 175 Query: 159 SLSERKPTV---TVVLSNIRVIAI----------DHNIDSDERVLVGSTATLELTPMQAK 205 LS++K ++ +R+I + +N + +V ++ + + Sbjct: 176 ELSDKKSQTFSLNEIIPAMRIIRVKKYSADELSEKNNKNQKTEEVVTGYISVMIKREELD 235 Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 + A+ + L SI N S+ D+ +E++ Sbjct: 236 IIHIAEKSGDIILA-PSIVSDNNQSTNIYDIIPKLRITRELR 276 >gi|332970970|gb|EGK09944.1| hypothetical protein HMPREF9374_2747 [Desmospora sp. 8437] Length = 245 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 34/243 (13%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K ++ V+S + A VAG + + + + V ++K ++A ++ Sbjct: 5 KRRAIIFAVLSVLLATVAGFLFL--------EETAALQAGLGAPTTVYVAKQEIASREIL 56 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 P E P + V + D E+DG + VP+ KGD + L Sbjct: 57 RPEFFEAKEIPSKYVTSSMVTDPA------EIDGQVSVVPLGKGDQLTKSMLKP------ 104 Query: 122 SSLLPKGK-RAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNIRV 176 + L G+ R + S D VD+++ KP TV + + + Sbjct: 105 ARQLNDGESRMVLLRTSDKVLFDDSFTAQDRVDIIVSYEKDPKTGAEKPKTTVFMKDKLI 164 Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 + + + +ELT +A+ LV A++ A VL++ + + + D Sbjct: 165 VGV---------SKNQKSIGIELTLKEAEKLVYAENFAHSIRVLKAPQEQDMKKDNEKDA 215 Query: 237 WDV 239 D Sbjct: 216 QDD 218 >gi|330895617|gb|EGH27924.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 215 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 22/170 (12%) Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 G + G + G L+ ++ +RA + + + G + P D+VDV Sbjct: 1 GRSSGRTLTAGSWLTESNF--EAGGTLARMIRPHERALALQVDEVTGASGQLSPGDYVDV 58 Query: 155 VMVRSLSERKP--TVTVVLSNIRVIAI------------------DHNIDSDERVLVGST 194 ++ P + VV+ +R++ + D + +++ + T Sbjct: 59 LLYLPEDMSNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINART 118 Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 T+ + L+ A L L +RS + N ++V + Sbjct: 119 VTVAVPQALVARLMLASQTGVLRLAVRSADEGNLQGYWANEVSGPDAAER 168 >gi|328952515|ref|YP_004369849.1| hypothetical protein Desac_0789 [Desulfobacca acetoxidans DSM 11109] gi|328452839|gb|AEB08668.1| hypothetical protein Desac_0789 [Desulfobacca acetoxidans DSM 11109] Length = 357 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLS 172 L+ +P G RA ++ + + V + D VDV+ L +VL Sbjct: 47 PPKAVNLTENIPVGMRAVSIKVDEVTGVSRKVIKGDWVDVLATTPLPGSPHTSVARLVLD 106 Query: 173 NIRVIAI----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 ++V + D S ++ T TL +TP Q L+AA S AK+SL+ R D P Sbjct: 107 RVQVFDVTLEADTKGQSKQKGEKDWTVTLLVTPDQGATLLAAASQAKISLLARQANDARP 166 Query: 229 SSSEDSDVW 237 + D Sbjct: 167 HNFRDIAFA 175 Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 63/163 (38%), Gaps = 24/163 (14%) Query: 113 LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--------------- 157 + + +G + + G RA T+ + + + ++ D VDV++ Sbjct: 182 FLLKPDGDATDWIHPGMRAVTLKVRDTDGICANLRRGDRVDVLLTCPFSRFASGGNVAAG 241 Query: 158 --RSLSERKPTVTVVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVA---AQ 211 ++++ + +L ++ V+ + ++ E TL++TP A+ + A Sbjct: 242 AQGTVTDYEMVTRTLLQDVEVLVSEKGLEPNTEDNEPVRLVTLQMTPHDAEKVTCALDAT 301 Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE---IQIIKA 251 S + LV R+ D S ++ + KE I + K Sbjct: 302 SKDIIRLVSRNKRDRRLVCSPGQELSSLLMRKKEYNRIDVYKG 344 >gi|254381960|ref|ZP_04997323.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194340868|gb|EDX21834.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 205 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 72/212 (33%), Gaps = 20/212 (9%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + KGD+A ++ E + P+ + D + D + L + Sbjct: 5 VNSKVGSEVVAYRVKGDIAPYSPLSAGQFEQITVPKRWLSDTAVSD------LGALKDKI 58 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + KG ++ + V R L G++ + I ++ V G I P V+++ Sbjct: 59 ALTTLKKGSLLQTDMFVARP------QLQAGEQEIAIMIDAATGVAGKITPGARVNILGT 112 Query: 158 RSL--SERKPTVTVVLSNIRVIAID-----HNIDSDERVLVGSTATLELTPMQAKALVAA 210 V+++ RVI + + T L+ + + A Sbjct: 113 FKGKKPTDPDQSLVMVAGARVINVGKLTPLDKTSDKKGPSEAVPITFALSTKDTQRVAYA 172 Query: 211 QSVAK-LSLVLRSIADLNPSSSEDSDVWDVQE 241 +S A+ + L L + +P S D + Sbjct: 173 ESFAEHVRLALVAAGPESPVSPGDRSYTLEGD 204 >gi|229827062|ref|ZP_04453131.1| hypothetical protein GCWU000182_02446 [Abiotrophia defectiva ATCC 49176] gi|229788680|gb|EEP24794.1| hypothetical protein GCWU000182_02446 [Abiotrophia defectiva ATCC 49176] Length = 278 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 71/197 (36%), Gaps = 26/197 (13%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 K V+ K + G ++T + LE V + + + + G + Sbjct: 34 EKQEEVVRVKEKITEGELITADKLETVNVGAYGLSPDVVKSIDG------ITGKYAKTDF 87 Query: 103 LKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRS 159 KG I E L D + L +P+ K A ++ I S ++ + + D V ++ + Sbjct: 88 YKGSYITGEGLSDVALEEDTYLNDIPEDKYAISITIQSFAAGLSSKLLKGDIVTII-TKK 146 Query: 160 LSERKPTVTV--VLSNIRVIAIDHNIDSDERVLVG--------------STATLELTPMQ 203 + + L+ + V++ D+ +T TL + +Q Sbjct: 147 GEGDEAVTEIPRELTYVEVLSTTEEDGEDKENNGKEVKKEDDTKAKKKLATITLLVNSLQ 206 Query: 204 AKALVAAQSVAKLSLVL 220 A+ L + ++ + + L Sbjct: 207 AEELASFENQRGIHVAL 223 >gi|222834615|gb|EEE73078.1| predicted protein [Populus trichocarpa] Length = 388 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 65/205 (31%), Gaps = 49/205 (23%) Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 + G P+ ++L+ GL+ L G+RA + I A G ++P D VDV Sbjct: 2 ALTPGTPLFEQQLL----SGLALQLEPGQRALAIAIREQMAAGHHVRPGDFVDVYFTLDG 57 Query: 161 SERKP----TVTVVLSNIRVIAIDHNI-------------------------------DS 185 + ++L+ RV+A + Sbjct: 58 KSDQAPVDAQTRLLLARSRVLAYGSGSVERPPMPAVQRQAQQDKESAGSSLRRASAADQT 117 Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD--------LNPSSSEDSDVW 237 +R +A L + + L A+ +L+L LR+ D + Sbjct: 118 GQRPENVQSAVLAVPLDDVERLTLAEKFGQLTLALRNPDDLLAGHRLTHLAGDPAGAAFL 177 Query: 238 DVQEEGKEI--QIIKAGVIVNKDGE 260 + + + +AG + G+ Sbjct: 178 GLAGRQAAVRHRCARAGQVTACAGQ 202 >gi|17549310|ref|NP_522650.1| signal peptide protein [Ralstonia solanacearum GMI1000] gi|17431562|emb|CAD18240.1| probable flp pilus assembly cpab; signal peptide protein [Ralstonia solanacearum GMI1000] Length = 208 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 15/158 (9%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 + V EN V+++ L G +T + + + P + Sbjct: 25 WKNAHRQPVPAAAQQNENGKTLYPVVVTVKPLEAGKPITADQVGVESLPIN--PADAFSE 82 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143 V++ + G VPI G P+ +L + GL+ + G+RA + + VG Sbjct: 83 VNK------VVGREPIVPIGIGVPLIGSQL----SSGLALQVALGQRAVAITVDEVVGVG 132 Query: 144 GMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIA 178 + P D+VDV +V ++ ++L ++RV+A Sbjct: 133 NRVMPGDYVDVFLVLRKDGQEIDDSKAHLLLPHLRVLA 170 >gi|228943039|ref|ZP_04105540.1| Hypothetical secreted protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955921|ref|ZP_04117858.1| Hypothetical secreted protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228976628|ref|ZP_04137071.1| Hypothetical secreted protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783097|gb|EEM31233.1| Hypothetical secreted protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228803748|gb|EEM50430.1| Hypothetical secreted protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816624|gb|EEM62748.1| Hypothetical secreted protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 263 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 42/244 (17%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + V LVA I E + V SK D+ Sbjct: 1 MKKLPKKTVSVLIAVGLVATIAGY----------ENYKINSAINPTKVYYSKVDIPPRTK 50 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T ++L+ P + + I +V ++G + K + +K+V + Sbjct: 51 ITKDMLQERVIPGDAIAPNAITNVKDLEGKYTVNG----FGVSKNSLLYKDKVVPKDELP 106 Query: 121 LSSLL--PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-----VVLSN 173 +++L K + A + + I ++ G I P+ +VD+ + V + Sbjct: 107 DAAILNLKKSEVAFPLLVDIETSSGNSIIPDSYVDLYFKGKVKNESDHTEKPIFGRVAKH 166 Query: 174 IRVIAI---------------------DHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212 +RV ++ D+ + + + T ++ + + L Sbjct: 167 VRVTSVKDSNATNVFDPKSVEVDGSYKDNLNNEAKNRPLAKIYTFAVSDEENQLLNKGAL 226 Query: 213 VAKL 216 + ++ Sbjct: 227 IGEI 230 >gi|296118260|ref|ZP_06836841.1| putative secreted protein [Corynebacterium ammoniagenes DSM 20306] gi|295968818|gb|EFG82062.1| putative secreted protein [Corynebacterium ammoniagenes DSM 20306] Length = 223 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 32/218 (14%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 V+ + A ++A+ + + +L+ D+ G +T V Sbjct: 16 VIGVILVFAAVVVALSGLRENP---------------EILVFARDVDAGQELTAADTHLV 60 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 P + + D + E+ G ++ P + G+ + +L+ L+S L G Sbjct: 61 RVPHDVIP-----DEGALHDPDEVVGRIITAPAVAGEFVTELRLL---GDELTSQLVPGG 112 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLS--ERKPTVTVVLSNIRVIAI------DH 181 + ++ + ++ D V+VV + + + RVIA Sbjct: 113 HMVPLKLAEPDLIS-LLHHGDTVNVVSSQEDELSPGLFSPLTIAEGARVIATSADISAGA 171 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + S+ V +T L L QA+ + +A L++V Sbjct: 172 HASSNASVGSPATILLALPADQAQLVASASLSQPLTVV 209 >gi|320161550|ref|YP_004174774.1| hypothetical protein ANT_21480 [Anaerolinea thermophila UNI-1] gi|320161814|ref|YP_004175039.1| hypothetical protein ANT_24130 [Anaerolinea thermophila UNI-1] gi|319995403|dbj|BAJ64174.1| hypothetical protein ANT_21480 [Anaerolinea thermophila UNI-1] gi|319995668|dbj|BAJ64439.1| hypothetical protein ANT_24130 [Anaerolinea thermophila UNI-1] Length = 290 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 29/192 (15%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + + + +V++ V VA + P ++V+++ GDL G V+T Sbjct: 1 MKKFIPLVLAIVVFAVALAL-----------------NQPEPQVSVVVAAGDLPEGRVLT 43 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L P+ +G + D Q L G +RV GDP+ L GG + Sbjct: 44 EGDLTAKELPKSLAPEGAVSDP------QSLVGQRLRVARSAGDPVLPVHL-----GGET 92 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 L +RA + ++ + + G++KP D V V ++ + S ++ + +RV+ ID Sbjct: 93 LELRPNERAVALSVTAAQGLAGLLKPGDRVGVTVIVNAS-QQTFAKYIAGGLRVLWIDPA 151 Query: 183 IDSDERVLVGST 194 +E T Sbjct: 152 FRREEAPAPQGT 163 >gi|157502150|ref|YP_001485249.1| hypothetical protein pBMB67_063 [Bacillus thuringiensis] gi|228942717|ref|ZP_04105245.1| Hypothetical secreted protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975828|ref|ZP_04136358.1| Hypothetical secreted protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982331|ref|ZP_04142607.1| Hypothetical secreted protein [Bacillus thuringiensis Bt407] gi|87133455|gb|ABD24365.1| hypothetical secreted protein [Bacillus thuringiensis] gi|228777436|gb|EEM25727.1| Hypothetical secreted protein [Bacillus thuringiensis Bt407] gi|228783854|gb|EEM31903.1| Hypothetical secreted protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816928|gb|EEM63025.1| Hypothetical secreted protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 272 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 28/246 (11%), Positives = 79/246 (32%), Gaps = 43/246 (17%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K + + ++ ++ + + E + V +K D+ + Sbjct: 6 KKSTPKKLAITLAASIGLVVAIVGY--------ENYAVSSKVNLQKVYFTKVDIPPRTKI 57 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T ++L+ ++ I + + ++G +++ + K+V + Sbjct: 58 TKDMLQVREVSNSSIPPNAIKNPNDIVGKYTVNG----FGLVENSYVFKNKVVSKDELPD 113 Query: 122 SSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV--------VL 171 +++ L + A + + I ++ G I P HVD+ ++ ++ V + Sbjct: 114 AAILNLKPSEVAFPLLVDIETSSGNSIIPESHVDLYFKGTVKDKDEKGEVVEKPIFGRIA 173 Query: 172 SNIRVIAI---------------------DHNIDSDERVLVGSTATLELTPMQAKALVAA 210 ++RV A+ D + + + T + + L Sbjct: 174 KHVRVTAVKDSNAANVFDPATINVEGSYQDSLKEEAKNRPMAKIYTFAVNEEENTLLNQG 233 Query: 211 QSVAKL 216 + K+ Sbjct: 234 TLIGKI 239 >gi|323493935|ref|ZP_08099052.1| pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] gi|323311876|gb|EGA65023.1| pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] Length = 258 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 92/266 (34%), Gaps = 25/266 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M T ++ +V +F+ I +S Q E+VI + VL+ G G + Sbjct: 1 MNRTIILVLVTLVIFSTF-VFINNTYLSSSGEQQEQVI--KSEPKVAVLVVSGAAKKGQI 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + +I + V + + G L + + G+ I E + + G+ Sbjct: 58 IKSSIHKTELVNLSQVEGVDYTPKDEIHIEP---GALFKRDLNPGELISQEDISNPGDRD 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGM-IKPNDHVDVVMVRSLSE----------RKPTVT 168 + + KG+ ++ V + + P D V V S Sbjct: 115 YMFLSVNKGELPYFYHVTGLGIVQTLSLYPGDKVSFVSTTSSDTNLLEDGYGDVGGLVSR 174 Query: 169 VVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V++S RV+ + + + D+ + + + L L AQ V +++V A+ Sbjct: 175 VIISGARVLQVIKGEEDEDAQDAEDKQYSIVVALRMRDVLKLEMAQKVGDVNIV---PAE 231 Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKA 251 + D+ E ++ ++ Sbjct: 232 IENRYLSIRS-SDLLETQFGVRELRG 256 >gi|320526981|ref|ZP_08028170.1| putative Flp pilus assembly protein CpaB [Solobacterium moorei F0204] gi|320132566|gb|EFW25107.1| putative Flp pilus assembly protein CpaB [Solobacterium moorei F0204] Length = 237 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 78/228 (34%), Gaps = 30/228 (13%) Query: 1 MKL--TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58 MK + ++ ++A+ + + I+K D+ Sbjct: 1 MKKVKRTGIYALILCLWAVGNILAFRYYL------------AKTINLKTTYIAKHDIPPR 48 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP--ILKGDPIRLEKLVDR 116 + L + PE+ + N ++ G V I KG + L + Sbjct: 49 TQIQTEDLTTIQVPEK------YMQAYTWNEKSDIVGKYTTVQGMIPKGSMFYKDMLYNE 102 Query: 117 GNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174 ++ L +G T++ ++ + G I+ +VD+ + S + P +++ + Sbjct: 103 KEVRDLAITKLQEGMTIFTLETNV--SALGSIEEGMYVDIYVSISQKKDVPITGILIRHA 160 Query: 175 RVIAI----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 VI+I ++ ++ V L + L A S+ ++ L Sbjct: 161 EVISIKDHKGLSLKDEQSSKVPYFIELGINQSDIDYLSLASSLGEVRL 208 >gi|86144319|ref|ZP_01062651.1| hypothetical protein MED222_07918 [Vibrio sp. MED222] gi|85837218|gb|EAQ55330.1| hypothetical protein MED222_07918 [Vibrio sp. MED222] Length = 258 Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 87/266 (32%), Gaps = 25/266 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + V+ I + +S E + E +++L+++ ++ Sbjct: 1 MN-RIIILLFVALSIFSTLVYININYISTDEEPLE--VHEKEEPKVSILVTQKEIRRSQP 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + P E ++ + G L + I KG + + + + G+ Sbjct: 58 LIPKYYEQKFVHISDLDGYYYTLEDDLVVKP---GALFKDDISKGTYLTQDMISNPGDRD 114 Query: 120 GLSSLLPKGKRAATMDISISSAVG-GMIKPNDHVDVVMV----------RSLSERKPTVT 168 + L G+ +++ V + P D V V Sbjct: 115 YMYLSLNDGELPYFYEVTGIGVVQTATLTPGDKVSFVSTTSSKSNLVENGYGDIGDLVSR 174 Query: 169 VVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V++S RV+ + + DS++ + + L L AQ + ++++ ++ Sbjct: 175 VIISGARVLQVIKGSEDSDSEDAEDKKYSLVIALNMRSVLKLEMAQKIGDVNII---PSE 231 Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKA 251 + D+ E ++ ++ Sbjct: 232 IENRYLSIRS-SDLLETQFGVRELRG 256 >gi|218676248|ref|YP_002395067.1| hypothetical protein VS_II0470 [Vibrio splendidus LGP32] gi|218324516|emb|CAV25990.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 258 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 28/266 (10%), Positives = 82/266 (30%), Gaps = 25/266 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + ++ + +I + + + E +++L+++ + Sbjct: 1 MNRVIILFL---VALSIFSTLIYINTNYISTDEEPLGVQEQEEPKVSILVTQKAIKRSQP 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 +TP + P ++ + G L + I +G I + + + + Sbjct: 58 LTPKFYDKKFVPISDLDGYYYTLEDDLIVEP---GALFKEDISEGTYITQDMISNPADRD 114 Query: 120 GLSSLLPKGKRAATMDISISSAVG-GMIKPNDHVDVVMV----------RSLSERKPTVT 168 + L G+ +++ V + D V V Sbjct: 115 YIYLSLNDGELPYFYEVTGIGVVQTATLTAGDKVSFVSTTSSKSNLVENGYGDIGDLVSR 174 Query: 169 VVLSNIRVIAIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V++S RV+ + + + + L L AQ + ++++ ++ Sbjct: 175 VIISGARVLQVIEGSEDSNSADSADKKYSLVIALNMRSVLKLEMAQKIGDVNII---PSE 231 Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKA 251 + D+ E ++ ++ Sbjct: 232 IENRYLSIRS-SDLLETQFGVRELRG 256 >gi|306817241|ref|ZP_07450987.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307700399|ref|ZP_07637438.1| putative Flp pilus assembly protein CpaB [Mobiluncus mulieris FB024-16] gi|304649921|gb|EFM47200.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307614384|gb|EFN93614.1| putative Flp pilus assembly protein CpaB [Mobiluncus mulieris FB024-16] Length = 198 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 16/183 (8%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 L+++ + G + P L + + E+ G V Sbjct: 31 PRPAGTRALVARVPICAGCEINPKDLRERRLDPGALPQHYFVQ------AGEVAGKKAAV 84 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 + G + L++ L+ G+ A + + AV G K V++ Sbjct: 85 ALEPGTVVAPGLLLENSLADLA----PGEVAFALSVEDP-AVAGFSKTGQIVEIWSSSPS 139 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT-LELTPMQAKALVAAQSVAKLSLV 219 + + ++ +N+RV+ ++ DS L + A+ +VAA+S LS V Sbjct: 140 VDNQ----LLATNVRVLGMEAAKDSLLGATSSKAIVYLGASEEAARKVVAAKSSHDLSFV 195 Query: 220 LRS 222 LR Sbjct: 196 LRG 198 >gi|227876349|ref|ZP_03994461.1| hypothetical protein HMPREF0577_1762 [Mobiluncus mulieris ATCC 35243] gi|269975913|ref|ZP_06182917.1| putative pilus assembly transmembrane protein [Mobiluncus mulieris 28-1] gi|227842890|gb|EEJ53087.1| hypothetical protein HMPREF0577_1762 [Mobiluncus mulieris ATCC 35243] gi|269935741|gb|EEZ92271.1| putative pilus assembly transmembrane protein [Mobiluncus mulieris 28-1] Length = 198 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 16/183 (8%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 L+++ + G + P L + + E+ G V Sbjct: 31 PRPAGTRALVARVPICAGCEINPKDLRERRLDPGALPQHYFVQ------AGEVAGKKAAV 84 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 + G + L++ L+ G+ A + + AV G K V++ Sbjct: 85 ALEPGTVVAPGLLLENSLADLA----PGEVAFALSVEDP-AVAGFSKTGQIVEIWSSSPS 139 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT-LELTPMQAKALVAAQSVAKLSLV 219 + + ++ +N+RV+ ++ DS L + A+ +VAA+S LS V Sbjct: 140 VDNQ----LLATNVRVLGMEAAKDSLLGATSSKAIVYLGASEEAARKVVAAKSSHDLSFV 195 Query: 220 LRS 222 LR Sbjct: 196 LRG 198 >gi|84385705|ref|ZP_00988736.1| hypothetical protein V12B01_26264 [Vibrio splendidus 12B01] gi|84379685|gb|EAP96537.1| hypothetical protein V12B01_26264 [Vibrio splendidus 12B01] Length = 251 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 77/231 (33%), Gaps = 21/231 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M L + A+ + + Q E V+ E + ++V D+ V Sbjct: 1 MNRAVLFLFI-----AISLFLAFFYVSENFLSQEEVVVEEEKIRMVDVAFLNNDVVKASV 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 V +L+ + PE V + G L + G + + + G+ Sbjct: 56 VKQQLLDIQSLPETTVKA---RGYIPYTDVNIQAGALWSNDVEAGQVLNADYFSNPGDKD 112 Query: 120 GLSSLLPKGKRAATMDISISSAVGGM-IKPNDHVDVVMV----------RSLSERKPTVT 168 + L K + S SS V + I+P D V V T Sbjct: 113 YMYLSLSKNEVPYYYTSSGSSIVEALPIQPQDRVSFVATTSSESNLLEDGYSDINNLTSN 172 Query: 169 VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 V++ RV+ + + + D+ S + LT Q L AQ + ++LV Sbjct: 173 VIIDGARVLQVVESNNEDDEDKEHSLI-IALTVKQVLKLEMAQKIGAITLV 222 >gi|298345610|ref|YP_003718297.1| hypothetical protein HMPREF0573_10484 [Mobiluncus curtisii ATCC 43063] gi|304390701|ref|ZP_07372654.1| SAF domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657893|ref|ZP_07910773.1| SAF domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235671|gb|ADI66803.1| hypothetical protein HMPREF0573_10484 [Mobiluncus curtisii ATCC 43063] gi|304326457|gb|EFL93702.1| SAF domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491690|gb|EFU81301.1| SAF domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 198 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 28/212 (13%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 ++ A++A +A+ L P V++ K ++ G +T + A Sbjct: 13 LAAGLAILAVFVAVTLFLPEKAAA------------TVVVVKHEVCAGCEITAQDVRLSA 60 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 V + + G V + G ++ LV+ L G+ Sbjct: 61 LAPSAVPQDHFQKADR------VIGKTAAVSLTSGTVLQPALLVENAVEDL----RTGEV 110 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDS-DERV 189 A +++S AV G K V++ + + ++ SN RV+ + ++ Sbjct: 111 AFAIEVSDP-AVAGFSKTGQSVEIWCSGGNVDGQ----LLASNARVVGVKAVSENFLGTG 165 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 S A L +A+ ++AA++ LS V+R Sbjct: 166 NSASIAYLAAPEDEARRVIAAKTDHDLSFVVR 197 >gi|163840497|ref|YP_001624902.1| hypothetical protein RSal33209_1753 [Renibacterium salmoninarum ATCC 33209] gi|162953973|gb|ABY23488.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC 33209] Length = 227 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 17/193 (8%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 T L + DL G ++ + + + P + + + G + Sbjct: 45 TPANQPVETALAASKDLPAGSTISASDMVLLKVPLAAIPQAALARPS------QAIGQQL 98 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 + KG + L+ L + P G A + +S + ++ P V VV+ Sbjct: 99 AGALRKGQILTDTSLL---GQSLLTGTPAGSVAVPLRLSDA-GTAKLVAPGQLVTVVLTN 154 Query: 159 SLSERKPTVTVVLSN-IRVIAIDHNIDSDERVL------VGSTATLELTPMQAKALVAAQ 211 S + VL+ I V+ + + + Q+K L A Sbjct: 155 EDSTGRAENGTVLAASIPVLWSQTGAQTANGNSWLPGKEADGLVVVAASAEQSKTLAGAS 214 Query: 212 SVAKLSLVLRSIA 224 + K+SLVL S + Sbjct: 215 TRGKISLVLVSRS 227 >gi|153836372|ref|ZP_01989039.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|149750274|gb|EDM61019.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] Length = 251 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 15/222 (6%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 + VF + +A VS Q E V F+ V + V + ++ Sbjct: 4 ALIFVFVAITMFLAFFYVSDFFDQPEPVAVVENEVFVQVAFVNRTVNKADPVNIDAIDIR 63 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKG 128 F E ++ G L + +G + + + G + L K Sbjct: 64 EFSESEAKQHSYT---PYTSINIESGALWAKDVTEGTQLTSNLVSNPGEKDYMYLSLKKD 120 Query: 129 KRAAT-MDISISSAVGGMIKPNDHVDVVMV----------RSLSERKPTVTVVLSNIRVI 177 + + S I+P D V V T V++ V+ Sbjct: 121 QVPYYYLSQGSSIVEALPIQPGDRVSFVATTSSQSNLLESGYSDIDSLTSNVIIDGALVL 180 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + + D+ + LT Q L AQ + ++LV Sbjct: 181 QAMNVSEDDDSSNEDYGLIIALTVKQVLKLEMAQKIGAITLV 222 >gi|315654208|ref|ZP_07907116.1| SAF domain protein [Mobiluncus curtisii ATCC 51333] gi|315491243|gb|EFU80860.1| SAF domain protein [Mobiluncus curtisii ATCC 51333] Length = 198 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 77/212 (36%), Gaps = 28/212 (13%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 ++ A++A + + L P V++ K ++ G +T ++ A Sbjct: 13 LAAGLAILAVFVVVTLFLPEKAAA------------TVVVVKHEVCAGCEITAQNVKLSA 60 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 V + + G V + G ++ LV+ L G+ Sbjct: 61 LAPSAVPQNHFQKADR------VIGKTAAVSLTSGTVLQPALLVENAVEDL----RTGEV 110 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDS-DERV 189 A +++S AV G K V++ + ++ SN RV+ + ++ Sbjct: 111 AFAIEVSDP-AVAGFSKTGQSVEIWCSGGNVDG----ELLASNARVVGVKAVSENFLGTG 165 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 S A L +A+ ++AA++ LS V+R Sbjct: 166 NSASIAYLAAPEDEARRVIAAKTDHDLSFVVR 197 >gi|271969844|ref|YP_003344040.1| hypothetical protein Sros_8655 [Streptosporangium roseum DSM 43021] gi|270513019|gb|ACZ91297.1| hypothetical protein Sros_8655 [Streptosporangium roseum DSM 43021] Length = 205 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 16/180 (8%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + + VL + DL G V+ L+ VA + V DG + + G ++ Sbjct: 36 KPDTASVTVLAAARDLPSG-VLEAADLKAVALRPDTVPDGAVK------PGTAIAGRVLA 88 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 P+ +G+P+ +++ L + G A + ++ ++ P D VDV+ S Sbjct: 89 GPMRRGEPLTDARILGPS---LLAAHGPGTVATPVRVADPET-ARLLSPGDVVDVLAAPS 144 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 E V ++ V+ D G+ L T QA L +AQ+ LS+ Sbjct: 145 TWEGAAPARTVAEDVTVLTT-----PDGEADRGALLVLATTSDQAVELASAQAGGHLSIT 199 >gi|260892674|ref|YP_003238771.1| SAF domain protein [Ammonifex degensii KC4] gi|260864815|gb|ACX51921.1| SAF domain protein [Ammonifex degensii KC4] Length = 214 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 85/240 (35%), Gaps = 42/240 (17%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + ++ + AG +A L VL++K D+ Sbjct: 1 MTRQKFFFLMAVLAGLVAAGSLAWLLS-------------AFLPQKTVLVAKSDVPARGP 47 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR---G 117 VT +E V+ P+ + + + EL G + R I G +R L + G Sbjct: 48 VTE--VEAVSLPKAGLPPDAVTE------RGELAGKVARGFIPAGTVLRRAMLQPKWAAG 99 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 G + + G R + ++ + VGG + D +DV +V R +V +++ V Sbjct: 100 AAGALAEIGPGYRMLALPLTADTTVGGCVASGDRIDVYLV-----RGGRAELVAADVLVF 154 Query: 178 A------------IDHNIDSDERVLVGSTATLELTPMQAKALVAA-QSVAKLSLVLRSIA 224 + D + + + P +A+ LV+A KL VLR + Sbjct: 155 SGPGVPSREGKKGFGALTGGDREQEKRDSLVVVVRPDEAERLVSALGGDGKLVAVLRPLD 214 >gi|227501477|ref|ZP_03931526.1| SAF domain protein [Corynebacterium accolens ATCC 49725] gi|227077502|gb|EEI15465.1| SAF domain protein [Corynebacterium accolens ATCC 49725] Length = 241 Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 20/228 (8%) Query: 19 AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 ++ + + + VL+ DL G ++ + P ++ Sbjct: 24 GVLVRRAIALVLLIAALASAVSRAKELPQVLVFSHDLPAGAELSAADVSLERLPSSSIPS 83 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR--------GNGGLSSLLPKGKR 130 + D A +L G ++ KG+ + ++L+ + +G S R Sbjct: 84 SALAD-----APSDLAGRIITAAAGKGEVVTSQRLLGQELVSSLVANSGSADSKEGGSGR 138 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-TVVLSNIRVIAIDHNIDSDERV 189 + ++ + + D VD+V ++ +P V+ S RV++ E Sbjct: 139 MIPVKLADPDIIP-HLHHGDTVDIVTANDATDSEPATARVIASGARVVSTTTA----EGE 193 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 + +T L L A + AA L++V+ P + D+D Sbjct: 194 VSSATVLLALPNEHANDVAAASLNQPLTVVIVG-DRAQPQTPVDADPA 240 >gi|220927571|ref|YP_002504480.1| SAF domain protein [Clostridium cellulolyticum H10] gi|219997899|gb|ACL74500.1| SAF domain protein [Clostridium cellulolyticum H10] Length = 218 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 78/221 (35%), Gaps = 25/221 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + + + +I + + + E K ++V+++ D+ G V Sbjct: 1 MSKRLIIK---TVLICIGLFLIMDSALFAYIFTKYPLNME---KQVSVVVATADIKKGTV 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + L E V D+ ++G I K D IR L+++ + Sbjct: 55 IEERFLRKKDVWESTVNSSIERDI------GNIEGKKALTDIYKDDYIRSCDLLEKKDWY 108 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI- 179 +R + ++ + +I+ +VD+ R + +L I+V + Sbjct: 109 -----KDDERIIVLPTNMEERLANLIRKGSYVDI---RLQKDSGEATEDILYKIKVEDVL 160 Query: 180 DHNIDSDERVLVGSTAT----LELTPMQAKALVAAQSVAKL 216 D + + ++ T L L + + + +A +L Sbjct: 161 DETGTALDSKSAVNSKTAYFKLVLGKKERQKIYSAAKNGRL 201 >gi|328884723|emb|CCA57962.1| hypothetical protein SVEN_4676 [Streptomyces venezuelae ATCC 10712] Length = 235 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 72/196 (36%), Gaps = 21/196 (10%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + KGD+A + N E + P+ + + + D+ ++G + Sbjct: 33 VNSKVGPETTAYRIKGDVAPYTPLRANQFEKITMPKRWLSETAVTDLRV------IEGRI 86 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + G ++ + +V+R L G++ + I ++ V G I V++ Sbjct: 87 AVTRLKAGSLLQSDMIVERPE------LQPGQQEIAIMIDAATGVAGKITAGATVNIYAT 140 Query: 158 --RSLSERKPTVTVVLSNIRVIAID------HNIDSDERVLVGSTATLELTPMQAKALVA 209 ++ ++++ RV+ + + R + L+ + A+ + Sbjct: 141 FAGEKKDQPAQSRMIVAGARVLDVGKLTPIRESSQGSARTNDAVPISFALSTLDAQRVAY 200 Query: 210 AQSVAK-LSLVLRSIA 224 A+S A+ + L L + Sbjct: 201 AESFAEHVRLALVAPT 216 >gi|228968939|ref|ZP_04129887.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228790746|gb|EEM38399.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 267 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 78/236 (33%), Gaps = 42/236 (17%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 + V LVA I E + V SK D+ +T ++L+ Sbjct: 13 VSVLIAVGLVATIAGY----------ENYRINSAINPTKVYYSKVDIPPRTKITKDMLQE 62 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL--P 126 P + + I +V ++G + K + +K+V + +++L Sbjct: 63 RVIPGDAIAPNAITNVKDLEGKYTVNG----FGVSKNSLLYKDKVVPKDELPDAAILNLK 118 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-----VVLSNIRVIAI-- 179 K + A + + I ++ G I P+ +VD+ + V ++RV ++ Sbjct: 119 KSEVAFPLLVDIETSSGNSIIPDSYVDLYFKGKVKNESDHTEKPIFGRVAKHVRVTSVKD 178 Query: 180 -------------------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 D+ + + + T ++ + + L + ++ Sbjct: 179 SNATNVFDPKSVEVDGSYKDNLNNEAKNRPLAKIYTFAVSDEENQLLNKGALIGEI 234 >gi|86360427|ref|YP_472315.1| hypothetical protein RHE_PE00151 [Rhizobium etli CFN 42] gi|86284529|gb|ABC93588.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 309 Score = 77.1 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 8/154 (5%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 ++ + + L+ G++ TE V E A L + G +TP++L Sbjct: 5 LIAAVIVGLITGVLLYFW-------TESVKNEQVAYAFMRLQPDKKVTRGQAITPDMLAE 57 Query: 69 -VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127 V PE + + L I G + + D G L++++ Sbjct: 58 PVMLPESFGPLAKLAVPAASAYQEWLKDRTAAADIPAGSVLLFQYFDDTDGGRLTTMIAP 117 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 GKRA T+ ++ + AVG ++P +VD++ Sbjct: 118 GKRALTLPVNAAEAVGHFVEPGSYVDILGTVDEP 151 Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 6/73 (8%) Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGST----ATLELTPMQAKALVAA--QSVAKLS 217 + L N++V+A+ + V ++ T+E+TP +A+ L+ A Q+ L+ Sbjct: 228 RVVTRTFLQNVKVLAVGAATTPEGAVTKANSSYNHVTVEVTPSEAEMLIFAMGQANGSLN 287 Query: 218 LVLRSIADLNPSS 230 LVLR+ D + Sbjct: 288 LVLRNPTDNSVED 300 >gi|283787692|ref|YP_003367557.1| tight adherence protein RcpC [Citrobacter rodentium ICC168] gi|282951146|emb|CBG90837.1| putative tight adherence protein RcpC [Citrobacter rodentium ICC168] Length = 290 Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 78/243 (32%), Gaps = 30/243 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV------QTEEVITENPAKFINVLISKGD 54 M+ L+ + + + + + + SP I + + I+V +++ D Sbjct: 1 MRKKSLVVYIYIVMIFVGLAGLFLIMNSPQSAESVTDKAPAPAIKKEEQEKISVAVAERD 60 Query: 55 LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 L V+T + G + + + + VP+ KG I LV Sbjct: 61 LPAKAVLTAEDFRIKMV---EITRGGHEKASFALGNKSIKDYALNVPVAKGTFIPGSALV 117 Query: 115 DRGNG-GLSSLLPKGKRAATMDISISSAVG-GMIKPNDHVDVVMVRSLSE---------- 162 G +S L G T +S + I+ +D+ MV + Sbjct: 118 KPGTTEYISLFLRPGHVLYTFRLSEADNYLFDNIRAGQFIDIFMVYGKKKENGKEMLVSP 177 Query: 163 ----RKPTVTVVLSNIRVIAIDHNIDSDERV-----LVGSTATLELTPMQAKALVAAQSV 213 + ++ N RV+A+ ++ GS EL K L + Sbjct: 178 STTIESTRLKPLMKNRRVLALRPTKIVTDKNGISTREGGSQLVAELNEQDIKVLKGLEGK 237 Query: 214 AKL 216 AK+ Sbjct: 238 AKI 240 >gi|296132328|ref|YP_003639575.1| hypothetical protein TherJR_0807 [Thermincola sp. JR] gi|296030906|gb|ADG81674.1| hypothetical protein TherJR_0807 [Thermincola potens JR] Length = 290 Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 26/257 (10%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + + + I + L+ + L + Q ++ V+++K + +T Sbjct: 1 MKKWLKITFVLITGLLLAVTTFILNKSYIAQHTDLK--------PVVVAKETVTPYNPIT 52 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG--G 120 E V ++ + + D + G L I GD IR ++VD + G Sbjct: 53 K--YELVKKVRSSIPEDAVTDPKYLEKKKWYAGKL---GIGAGDIIRKSRIVDEDSNPFG 107 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV-------LSN 173 + L K ++ ++ + G IKP V+ + + ++R TV+ L N Sbjct: 108 KAISLTDNKVLVGVETNLVKSAGANIKPGVKVNAFVFKPANDRSEQDTVITPNENPLLGN 167 Query: 174 IRVIAI----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 I V + N+ + + + A LE T AK LV Q K+ L + S Sbjct: 168 ILVKQVLNSQATNVAGKGKEAMPTVAVLETTVPVAKLLVLYQETGKIYLAPVGVDIKTAS 227 Query: 230 SSEDSDVWDVQEEGKEI 246 + + K + Sbjct: 228 KIAEHKQTNGAPVSKPV 244 >gi|325964114|ref|YP_004242020.1| Flp pilus assembly protein CpaB [Arthrobacter phenanthrenivorans Sphe3] gi|323470201|gb|ADX73886.1| Flp pilus assembly protein CpaB [Arthrobacter phenanthrenivorans Sphe3] Length = 241 Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 73/204 (35%), Gaps = 24/204 (11%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTP--NILEWVAFPEENVFDGFIDDVHQPNA 89 VQ + + +NVL+ K + G + L + P+ V G + + Sbjct: 26 VQGASARAQAGLEPVNVLVVKEKVPAGTKTSDLSAKLRVDSIPKSAVPAGALT------S 79 Query: 90 MQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKP 148 + + +G + V + G+ + +LVD + + +P+G T+ +S +GG ++ Sbjct: 80 LDQQEGKVTAVALEPGEQLMATRLVDPRDLAPGTVPVPEGLEEVTLLLSPERILGGRLEA 139 Query: 149 NDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-------------ERVLVGSTA 195 D V + + + ++ ++ + A+ E + Sbjct: 140 GDTVTIYSSFDKEDGQ--TGLLFHDVLITAVQKAPSDSKNNSGSGSSEPAVEMPNGSAFI 197 Query: 196 TLELTPMQAKALVAAQSVAKLSLV 219 T + A L+ + KL L Sbjct: 198 TFARSDSDASKLIYSAEFGKLWLA 221 >gi|303233382|ref|ZP_07320051.1| Flp pilus assembly protein CpaB [Atopobium vaginae PB189-T1-4] gi|302480511|gb|EFL43602.1| Flp pilus assembly protein CpaB [Atopobium vaginae PB189-T1-4] Length = 335 Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 76/210 (36%), Gaps = 18/210 (8%) Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87 + E++ + + +++S L VG V+ P+ + + Sbjct: 30 ADAQKMREDLQARYGGETVELVVSTKALRVGDVIEPSDVVKRDWVSMLAPADAYTR---- 85 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 M+++ G V+VP+ + PI +P+G A ++ ++ +G I Sbjct: 86 --MEDVVGKTVKVPLSENAPITQTTFAAMDEQY---SIPEGYVALSIPLTEKLGLGQHIA 140 Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL 207 P+ V + + ++ S++RV+ + D + + + P + Sbjct: 141 PHTAV-----VAYEATQKASDLITSDMRVLYVQ---DEARGQFSSPSCVVAVKPQDVGRI 192 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 + AQ+ L V D +++ S+ Sbjct: 193 LTAQAKNSLKFV-VPAQDTTSDNADASNAA 221 >gi|319937910|ref|ZP_08012310.1| hypothetical protein HMPREF9488_03146 [Coprobacillus sp. 29_1] gi|319806816|gb|EFW03455.1| hypothetical protein HMPREF9488_03146 [Coprobacillus sp. 29_1] Length = 223 Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 80/223 (35%), Gaps = 35/223 (15%) Query: 1 MKLT---RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MKL ++ I A+V+ + + +VL+ + Sbjct: 1 MKLKGKNKIFTIFSIVFAAIVSISLYFAFIGN---------------MTDVLVVNQTVRG 45 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G +T ++L + ++ D ++ + E+ G + + G + + + Sbjct: 46 GTQITESMLSVKKVDKSSLPDNYLK----ASLRDEVVGKYFDLGLTSGGVLTKDNISV-- 99 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 G +SL+ G +M + DH+++V+ S K T+ N+ V Sbjct: 100 -SGKASLIQSGYILYSMK--DLETYPNGLVTGDHLNIVVASSSDGNKYVKTI--ENVPVA 154 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ++ + + V +TP A+ + AQ+ +S+ L Sbjct: 155 SVHMEENVITGIEVY------VTPEAAQLIAFAQANGDVSVGL 191 >gi|28900575|ref|NP_800230.1| hypothetical protein VPA0720 [Vibrio parahaemolyticus RIMD 2210633] gi|260365455|ref|ZP_05777992.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|260877520|ref|ZP_05889875.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034] gi|260897539|ref|ZP_05906035.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466] gi|260901741|ref|ZP_05910136.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|28808955|dbj|BAC62063.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087131|gb|EFO36826.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466] gi|308090892|gb|EFO40587.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034] gi|308108967|gb|EFO46507.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308114362|gb|EFO51902.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|328470517|gb|EGF41428.1| pilus assembly protein CpaB [Vibrio parahaemolyticus 10329] Length = 250 Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 16/222 (7%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 + VF + +A VS Q E V F+ V + V + ++ Sbjct: 4 ALIFVFVAITMFLAFFYVSDFFDQPEPVAVVENEVFVQVAFVNRTVNKADPVNIDAIDIR 63 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKG 128 F E +++ G L + +G + + + G + L K Sbjct: 64 EFSESEAKQHSYT---PYTSIKIESGALWAKDVTEGTQLTSNLVSNPGEKDYMYLSLKKD 120 Query: 129 KRAAT-MDISISSAVGGMIKPNDHVDVVMV----------RSLSERKPTVTVVLSNIRVI 177 + + S I+P D V V T V++ V+ Sbjct: 121 QVPYYYLSQGSSIVEALPIQPGDRVSFVATTSSQSNLLESGYSDIDSLTSNVIIDGALVL 180 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + + D + LT Q L AQ + ++LV Sbjct: 181 QAMNVSEDDSSNEDYGLI-IALTVKQVLKLEMAQKIGAITLV 221 >gi|308234323|ref|ZP_07665060.1| Flp pilus assembly protein CpaB [Atopobium vaginae DSM 15829] Length = 272 Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 76/228 (33%), Gaps = 17/228 (7%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 A + S ++ I + ++++ L +G + + + + Sbjct: 25 AQSVRSDAQKARDDAIASYGGDVVRLVVTAHPLQIGDTIKAEDIVVRDWVSDLAPKDAYL 84 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV 142 + ++ G V+V + + P+ + + ++P G+ A ++ ++ + Sbjct: 85 NSD------DVIGKEVKVAVGENVPLSTMHFTESDDE---LVIPNGRVALSLPMNERLGI 135 Query: 143 GGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPM 202 G I P V T ++ ++ + + + + + L + P Sbjct: 136 GLHITPRTQV-----LGYDTTNKTTHLITKDMIALCVKEAQPA---QNIPAQLVLAVYPT 187 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 +++A + L LV+ ++ + + +E I+ Sbjct: 188 DVTRVLSAAATQSLRLVIPAVDVQDLKDDSQQVESEHTKEISSKSAIR 235 >gi|226310155|ref|YP_002770049.1| hypothetical protein BBR47_05680 [Brevibacillus brevis NBRC 100599] gi|226093103|dbj|BAH41545.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 279 Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 89/233 (38%), Gaps = 29/233 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K ++ +V+S + A +AG + ++ + + Q + + + + D+ ++ Sbjct: 5 KRRAIIFLVLSFLLAALAGFLFLQKIKDMNAQL--------GEMVEIYEANADIPSRALI 56 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 P+ L P++ D ++ D L + VP+ KGD I + Sbjct: 57 QPDQLTVREIPKKYADDSYVIDKAS------LKNQVTIVPLSKGDIITKNIMKPAN---- 106 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 + + R T+ S + ++ D VD+++ +S KP V + ++ V + Sbjct: 107 -VVRDENNRLVTVFSSNNIVFDQELEALDRVDIIISHEVS-GKPVTEVFMKDVPVAMVAK 164 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL---RSIADLNPSSS 231 + +S + LEL +A + Q A++ +L DL Sbjct: 165 SENSFKG------VALELPFEEAPKFIHQQHYAQMVRILKANVGKGDLGIPDP 211 >gi|296271147|ref|YP_003653779.1| SAF domain-containing protein [Thermobispora bispora DSM 43833] gi|296093934|gb|ADG89886.1| SAF domain protein [Thermobispora bispora DSM 43833] Length = 212 Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 30/193 (15%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 P + + VL + DL G ++ + + V P + + DG + + G +V Sbjct: 32 APPRGVPVLAAARDLP-GGRLSASDVTVVRLPPDALPDGVLR------PGTPMAGRVVAG 84 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 P+ +G+PI +L+ G+ +G A + I+ + V ++ P D VDV+ Sbjct: 85 PMRRGEPITDVRLLGP---GILRAQGQGLVATPVRIADAR-VAELLSPGDVVDVLAAFDG 140 Query: 161 --------------SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKA 206 P V +RV+A G+ L T QA Sbjct: 141 AALGGAYPDDAASGGTAAPASAPVARQVRVLA-----RPPGGDGEGALLVLATTVDQAAR 195 Query: 207 LVAAQSVAKLSLV 219 L AQ+ +L++ Sbjct: 196 LAHAQAHGRLAVA 208 >gi|284033647|ref|YP_003383578.1| SAF domain-containing protein [Kribbella flavida DSM 17836] gi|283812940|gb|ADB34779.1| SAF domain protein [Kribbella flavida DSM 17836] Length = 203 Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 69/187 (36%), Gaps = 20/187 (10%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 ++ PA VL + DL G+ + + P V G + +L Sbjct: 32 ALVAVSPPPAASTPVLAAARDLPGGLTPAAGDIRTLRLPTSTVPAGVL------PPGTDL 85 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 ++ + G+P+ + + + +P G A + + + + +++P D +D Sbjct: 86 SHRVLATAVRSGEPLTDARFLTP------TAVPPGLLAYPLRLDDAD-IAALLRPGDRID 138 Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213 + + + + T + + ++A+ G+ L +P A L A + Sbjct: 139 LYAASATA--DASATRLAEAVPILALPAPTR-----STGALVVLAASPGTAARLAQASAN 191 Query: 214 AKLSLVL 220 +L++ L Sbjct: 192 TRLTVAL 198 >gi|302536562|ref|ZP_07288904.1| flp pilus assembly protein CpaB [Streptomyces sp. C] gi|302445457|gb|EFL17273.1| flp pilus assembly protein CpaB [Streptomyces sp. C] Length = 207 Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + K D+A +T E V P+ + D +DD + L G + Sbjct: 33 VNSKVGAEVVAYRVKSDIAPYSALTAGQFEEVKVPKRWLSDTAVDD------LGALRGKI 86 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + KG ++ + VD+ L G++ + I ++ V G I V+++ Sbjct: 87 ALTTLKKGSLLQSDMFVDKP------QLQAGEQEIAIMIDAATGVAGKITSGAKVNIIAT 140 Query: 158 RSLSERKPTVT--VVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAA 210 ++ ++++N RV+ + + T L + + A Sbjct: 141 FKGAKETDPSRSVIIVANARVLGVGKLTALDKDSDRKGPAEAVPITFALNTKDTQRVAYA 200 Query: 211 QSVAK 215 +S A+ Sbjct: 201 ESFAE 205 >gi|257790639|ref|YP_003181245.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|257474536|gb|ACV54856.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] Length = 432 Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 7/178 (3%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 ++ +I +N A +NV+++ D+A G +T LE A P+ V Sbjct: 242 AESSAIIAKNEANSVNVVVTNRDVAAGETITEADLETQAVPKAYCPTDAATKVSDVAGHT 301 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L ++S + G A + + S ++ +++ D Sbjct: 302 SLTTQTAGTS-----ISLSSLQASSSPAHITSAIEDGHVAIALSLDSSKSLSPLLRVGDR 356 Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209 V+V+ V S + V +N+++IA+D + S TL++T QA A+VA Sbjct: 357 VNVMAVVS-DGATSSAETVCANVKIIALDSALS-GSPDAGYSLVTLDVTEDQAAAIVA 412 >gi|117927367|ref|YP_871918.1| hypothetical protein Acel_0157 [Acidothermus cellulolyticus 11B] gi|117647830|gb|ABK51932.1| hypothetical protein Acel_0157 [Acidothermus cellulolyticus 11B] Length = 238 Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 75/185 (40%), Gaps = 14/185 (7%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 + +T P ++V++++ DL G + + AFP G + + E+ Sbjct: 54 VQSLTPRPPATVDVVVAQRDLPAGATIRDADVRLAAFPTNLQPAGTLHRLV------EVT 107 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 G + P+ +G+P+ + G + G A + ++ AV + P VDV Sbjct: 108 GRRLISPVRRGEPLTDVRF------GGGAHPAPGLVAVPIHVAD-GAVTKLFSPGMSVDV 160 Query: 155 VMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 + + VV +++ V+A+ + SD + + + QA+ L AQ+ + Sbjct: 161 LAADPDAPLGTPAVVVATDVDVLAV-PSNGSDPAGDGSALLFVAASAWQARLLAQAQARS 219 Query: 215 KLSLV 219 L L Sbjct: 220 PLVLA 224 >gi|209546007|ref|YP_002277897.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538864|gb|ACI58797.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 312 Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 8/152 (5%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 ++ + + L+ G++ TE V E A L + G +TP++L Sbjct: 5 LIAAVIVGLITGVLLYFW-------TESVKNEQVAYAFMRLQPDRKVTRGQAITPDMLAE 57 Query: 69 -VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127 V PE + + L I G + + D G L++++ Sbjct: 58 PVMLPESFGALAKLAVPAASAYQEWLKDRTAAADIPAGSVLLFQYFDDNDGGRLTTMIAP 117 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 GKRA T+ ++ +SAVG ++P +VD++ Sbjct: 118 GKRALTLPVNAASAVGHFVEPGSYVDILGTVD 149 Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGST----ATLELTPMQAKALVAA--QSVAKLS 217 + L N++V+A+ ++ V ++ T+E+TP +A+ L+ A QS L+ Sbjct: 231 RVVTRTFLQNVKVLAVGAATTAEGAVTKANSTYNNVTVEVTPAEAEMLIFAMGQSNGSLN 290 Query: 218 LVLRSIADLNPSS 230 LVLR+ AD Sbjct: 291 LVLRNPADNTVEE 303 >gi|33152387|ref|NP_873740.1| flp operon protein C [Haemophilus ducreyi 35000HP] gi|21326706|gb|AAL92466.1| unknown [Haemophilus ducreyi] gi|33148610|gb|AAP96129.1| flp operon protein C [Haemophilus ducreyi 35000HP] Length = 278 Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 24/220 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIA----------MRLVSPHHVQTEEVITENPAKFINVLI 50 M L + + + G+ + + K I + Sbjct: 1 MNYRSLFILSIIILAVGFGGLFFLPDDQLNTPQQTTTQGEVAKAPQSKPSQSEKVITTVT 60 Query: 51 SKGDLAVGMVVTPNILEWVA--FPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 D+ G ++ P PE + + + + ++ A + L G LV + KG Sbjct: 61 LNHDIEKGTLLQPEDYTVSELTVPENSPLVESDVKELVDSAANKSLQGFLVAENLSKGSL 120 Query: 108 IRLEKLVDRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMV----RSL 160 + + L+D + L S+ P+ + A + I + I+ D V V V Sbjct: 121 LNQKVLIDPEDPRFILMSIDPQQEVAYRIYIKEAERYLLDSIRGGDMVSVYSVQQDLGRP 180 Query: 161 SERKPTVTVVLSNIRVIAID----HNIDSDERVLVGSTAT 196 + ++ + N +V+ + D + T T Sbjct: 181 ERDQNSLAKIAENFKVLKVKKFSPQQADPNNDENTKKTDT 220 >gi|306835635|ref|ZP_07468644.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] gi|304568479|gb|EFM44035.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] Length = 241 Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 75/207 (36%), Gaps = 20/207 (9%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + VL+ DL G ++ + P ++ + D A +L G + Sbjct: 43 AISRAKELPQVLVFSHDLPAGAELSAADVSLERLPSSSIPSSALAD-----APSDLAGRI 97 Query: 98 VRVPILKGDPIRLEKLVDR--------GNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 + KG+ + ++L+ + +G S R + ++ + + Sbjct: 98 ITAAAGKGEVVTSQRLLGQELVSSLVTESGSADSKEGGSGRMIPVKLADPDIIP-HLHHG 156 Query: 150 DHVDVVMVRSLSERKPTV-TVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208 D VD+V ++ +P V+ S RV++ E + +T L L A + Sbjct: 157 DTVDIVTASDATDSEPATARVIASGARVVSTTTA----EGEVSSATVLLALPNEHANDVA 212 Query: 209 AAQSVAKLSLVLRSIADLNPSSSEDSD 235 AA L++V+ P + D+D Sbjct: 213 AASLNQPLTVVIVG-DRAQPQAPVDAD 238 >gi|328943875|ref|ZP_08241340.1| hypothetical protein HMPREF0091_10565 [Atopobium vaginae DSM 15829] gi|327491844|gb|EGF23618.1| hypothetical protein HMPREF0091_10565 [Atopobium vaginae DSM 15829] Length = 255 Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 25/228 (10%), Positives = 76/228 (33%), Gaps = 17/228 (7%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 A + S ++ I + ++++ L +G + + + + Sbjct: 8 AQSVRSDAQKARDDAIASYGGDVVRLVVTAHPLQIGDTIKAEDIVVRDWVSDLAPKDAYL 67 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV 142 + ++ G V+V + + P+ + + ++P G+ A ++ ++ + Sbjct: 68 NSD------DVIGKEVKVAVGENVPLSTMHFTESDDE---LVIPNGRVALSLPMNERLGI 118 Query: 143 GGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPM 202 G I P V T ++ ++ + + + + + L + P Sbjct: 119 GLHITPRTQV-----LGYDTTNKTTHLITKDMIALCVKEAQPA---QNIPAQLVLAVYPT 170 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 +++A + L LV+ ++ + + +E I+ Sbjct: 171 DVTRVLSAAATQSLRLVIPAVDVQDLKDDSQQVESEHTKEISSKSAIR 218 >gi|326202872|ref|ZP_08192739.1| SAF domain protein [Clostridium papyrosolvens DSM 2782] gi|325986949|gb|EGD47778.1| SAF domain protein [Clostridium papyrosolvens DSM 2782] Length = 216 Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 76/224 (33%), Gaps = 31/224 (13%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 M ++ I + L + I A N K + V+++ ++ Sbjct: 1 MSKRLIIKTILICLGLFLILDSAIFAYIFTK---------YPINTEKTVAVVVATENIKE 51 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G V+ L V G ++ + G I + D IR L++R Sbjct: 52 GTVIEEGFLRKKQVYASGVNSGVETEI------GNVAGKKALTNIHRDDYIRAHDLLERK 105 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + +R + +S+ + +I+ +VD+ + R SE +L I+V Sbjct: 106 DWY-----RDDERIIILPVSMEERLANLIRKGSYVDIRLQRDTSE---VTEDILYKIQVK 157 Query: 178 AIDHNID---SDERVLVGSTATLELTP--MQAKALVAAQSVAKL 216 + + + + TA L+L + + +A KL Sbjct: 158 DVLDDAGIALDSKSAVNSKTAYLKLILGKTDREKIYSASRSGKL 201 >gi|260892668|ref|YP_003238765.1| SAF domain protein [Ammonifex degensii KC4] gi|260864809|gb|ACX51915.1| SAF domain protein [Ammonifex degensii KC4] Length = 221 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 78/217 (35%), Gaps = 28/217 (12%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + +++S +F + AG+ + + V+++ D+ VG VV P+ + Sbjct: 21 LSVLMSALFGVAAGLAVWFALQ------------VARPTVPVVVALRDMQVGHVVRPDEV 68 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGLSSL 124 +P V + + G ++ +GD +R ++L G L SL Sbjct: 69 AVRKYPPVAVPPDAVRKPEEAVGKTVTGGAVL-----QGDVLRKKRLSAEGSLEASLKSL 123 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184 P G A + + + G ++ D VD+ V V+ ++ Sbjct: 124 APPGWVAVQLPEGSAQGMLG-LRRGDRVDIYAETPTPGGAKQVLPVVRGAVLLLTPFQ-- 180 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVL 220 + + P A+AL A K+SLVL Sbjct: 181 -----EGAKCYVVAVPPDSAQALAAIDVYGKKVSLVL 212 >gi|308178037|ref|YP_003917443.1| hypothetical protein AARI_22500 [Arthrobacter arilaitensis Re117] gi|307745500|emb|CBT76472.1| hypothetical protein AARI_22500 [Arthrobacter arilaitensis Re117] Length = 236 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 18/195 (9%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 V + V++ D+ G +T N L + D +++ + G Sbjct: 52 NVFSSGQLSQREVVVVISDIPAGSQITSNQLAVQTVRLDP------QDDEVFESLEPVSG 105 Query: 96 VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 V + G +R LV L + P+G A + +S + V ++ P VD+V Sbjct: 106 QRAAVALPAGTVLRSYSLVGPQ---LLAGSPQGTVAVPLRLSDPATVT-LLHPGQLVDIV 161 Query: 156 MVRSLS-ERKPTVTVVLSNIRVIAIDHNID-------SDERVLVGSTATLELTPMQAKAL 207 + E++ + + V+ + N S R + + L Sbjct: 162 LTTGDGFEKQINSETIAKAVPVLWVPDNASTSEFGMLSGTRQSGEGIVVVAAASSLSDDL 221 Query: 208 VAAQSVAKLSLVLRS 222 A S K+S VL + Sbjct: 222 AGAVSRGKVSAVLVN 236 >gi|284991842|ref|YP_003410396.1| SAF domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065087|gb|ADB76025.1| SAF domain protein [Geodermatophilus obscurus DSM 43160] Length = 244 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 79/232 (34%), Gaps = 24/232 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ L + + A A ++ + + + + ++VL+ +A G Sbjct: 1 MRRRLLAALAALLLAATGAVVLLAYV------RGADARALAGVQTVDVLVVDRPVAEGTP 54 Query: 61 VT--PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 ++ P + G + D + EL G + V + G+ + + G+ Sbjct: 55 GEELAELVRTERLPAKAAVPGAVTD------LDELAGRVATVDLQPGEQLLAARFAVPGD 108 Query: 119 GGLSSLLP--KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 G+ +P +G ++ + AVGG + D V V + R V+++ ++ Sbjct: 109 LGVPGTVPAPEGTAEVSLLLEPQRAVGGRLAAGDTVGVHVSLDGRTRAVLSRVLVTQVQG 168 Query: 177 I--------AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 D TL L P A+A+V + L L Sbjct: 169 APVAVADGEGTDTASSGGAAPSASLMVTLGLRPEAAEAVVFGMEHGTVWLSL 220 >gi|134097376|ref|YP_001103037.1| hypothetical protein SACE_0770 [Saccharopolyspora erythraea NRRL 2338] gi|291009066|ref|ZP_06567039.1| hypothetical protein SeryN2_31485 [Saccharopolyspora erythraea NRRL 2338] gi|133909999|emb|CAM00111.1| hypothetical protein SACE_0770 [Saccharopolyspora erythraea NRRL 2338] Length = 183 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 14/188 (7%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 + + + VL++ DLA G V+ P+ + P E G + +V E Sbjct: 10 ALQPRPGPASDGVPVLVAARDLAPGHVLEPDDVARRTMPAELAPGGVLSEVD------EA 63 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G ++ G+P+ +L L++ A + ++ V ++ P VD Sbjct: 64 TGRVLGTASRSGEPLTDVRLAGPAQTALTTG-DPRHAAVPIRLADPD-VADLLHPGRRVD 121 Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213 +V + S +V+ VIA+ +R G + L A A+ AA Sbjct: 122 IVTTATRSGN---SSVLAEQAPVIAVRPT---GDRHDQGRLIVVGLPEGLAPAVAAASLT 175 Query: 214 AKLSLVLR 221 +++ LR Sbjct: 176 QSVTVTLR 183 >gi|118469802|ref|YP_889718.1| hypothetical protein MSMEG_5481 [Mycobacterium smegmatis str. MC2 155] gi|118171089|gb|ABK71985.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 68/182 (37%), Gaps = 12/182 (6%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 ++ ++V ++ DL G +T + + + DG DV + G Sbjct: 45 RSDPRGDHVDVAVAARDLVPGTALTAEDVRLESRSASTLPDGAQSDV------GAIVGAT 98 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + P+ +G+ + +++ L+ + R + + + A+ +I+ D VDV+ Sbjct: 99 LAGPMRRGEVLTDVRVIGSRLADLA--VGPDARIVPLSLGDA-ALLDVIRAGDVVDVLTT 155 Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 + T ++ S+ V+ + + A + L A + AA ++ Sbjct: 156 HDEEAKSATPRLIASDAVVVLVSQKPKGAGQD---RVALVALPARSAHEVAAASLTQAVT 212 Query: 218 LV 219 L Sbjct: 213 LT 214 >gi|221633004|ref|YP_002522229.1| putative membrane fimbriae assembly protein [Thermomicrobium roseum DSM 5159] gi|221156453|gb|ACM05580.1| putative membrane fimbriae assembly protein [Thermomicrobium roseum DSM 5159] Length = 331 Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 11/161 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++ V A VA ++ + + T P + ++ D+ G V Sbjct: 1 MRRAGRLYLLAGFVLATVAVVLGIIALQRQREPVMPTQTTTPTTQVV--VAARDVRAGSV 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + V +V G ++ G++V ++ G I L LV Sbjct: 59 LTSEDVTVVETDPASVAPGTARQPD------QVVGLVVAGDLVAGQRILLANLVLP---S 109 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 +S+ + GKRA + + +A+GG+++PND +D++ L Sbjct: 110 VSNTVQPGKRAVAIPVDRINALGGLLQPNDSIDLIYAGRLD 150 Score = 35.5 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 69/253 (27%), Gaps = 46/253 (18%) Query: 30 HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW-------------VAFPEENV 76 + T + L+ GDL G + L VA P + + Sbjct: 69 TDPASVAPGTARQPDQVVGLVVAGDLVAGQRILLANLVLPSVSNTVQPGKRAVAIPVDRI 128 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136 + G L V IL +P+ + + P Sbjct: 129 NALGGLLQPNDSIDLIYAGRLDLVRILPTEPL------ELADSAQGFSPPPESVKLPEPG 182 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-----------DHNIDS 185 S SS P + V++ E +P +++ N+R++ + Sbjct: 183 SGSSQSRRYPYPGEPGSRVVISDTGEGQPITKIIVQNLRILQVIAGTSVVVRSPGQARSE 242 Query: 186 DERVLVGST---------------ATLELTPMQAKALV-AAQSVAKLSLVLRSIADLNPS 229 T +E+ P QA+ + + ++LR+ D P Sbjct: 243 LTSTEPTRTPMPTANEATLPPVDLLIVEVDPEQAELISFLLDQNVRYQVILRARGDAQPV 302 Query: 230 SSEDSDVWDVQEE 242 ++ + E Sbjct: 303 QTDGVTYDRLVER 315 >gi|223982946|ref|ZP_03633158.1| hypothetical protein HOLDEFILI_00437 [Holdemania filiformis DSM 12042] gi|223965107|gb|EEF69407.1| hypothetical protein HOLDEFILI_00437 [Holdemania filiformis DSM 12042] Length = 266 Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 18/193 (9%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 E + + + ++ L G V+ ++ + P V +G D L G Sbjct: 35 ETTVQAAIDPVLIPVAARYLKSGTVIQREDIQMIEVPRPVVLEGVEKDPEL------LLG 88 Query: 96 VLVRV--PILKGDPIRLEKLVDRGNGGLSSLLP--KGKRAATMDISISSAVGGMIKPNDH 151 V I +G L+ + S P + + A T+D I ++ I P Sbjct: 89 QAVDTYNAIAEGSLFYEALLIPKEELHDVSAFPLLENEAAVTIDADIKTSYANSILPGHQ 148 Query: 152 VDVVMVRSLSERKPTVTVVL-----SNIRVIAIDHNID---SDERVLVGSTATLELTPMQ 203 +D+ ++ + VL S RVIA+ + + S + L Sbjct: 149 IDLYFQGYATQADESEKRVLYGQLVSQARVIAVRDSTGKNIDAQSDKATSVIVVALAYED 208 Query: 204 AKALVAAQSVAKL 216 A + A+ + Sbjct: 209 ADLVQRAKFFGTV 221 >gi|72160773|ref|YP_288430.1| hypothetical protein Tfu_0369 [Thermobifida fusca YX] gi|71914505|gb|AAZ54407.1| conserved hypothetical protein [Thermobifida fusca YX] Length = 214 Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 19/189 (10%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 + VL++ DL+ + +T + P V DG + + G + Sbjct: 40 RPPAPPAVEVLVAAHDLSGLVPLTDADTVARSIPAAVVPDGALA------PGDPVAGRAL 93 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 R P+ G+ + +L D G + L AA + ++ +++P +DV+ Sbjct: 94 RSPVRAGEILTEVRLADPPAAGYGADL----VAAPVRLADP-GAAALLRPGSRIDVLAAA 148 Query: 159 SLS-----ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213 T ++ + VI + + D +G+ L +T +A+AL + Sbjct: 149 GDPPVVDYPGPDTARRIVRDRPVITV--VAEDDAAHSLGTLIVLAVTDEEAQALAGHAAD 206 Query: 214 AKLSLVLRS 222 +LS+ +R Sbjct: 207 -RLSIAIRG 214 >gi|169834865|ref|YP_001715910.1| hypothetical protein CLK_A0283 [Clostridium botulinum A3 str. Loch Maree] gi|169408972|gb|ACA57382.1| hypothetical protein CLK_A0283 [Clostridium botulinum A3 str. Loch Maree] Length = 242 Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 81/229 (35%), Gaps = 29/229 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + I+V+ L+A A + + T N + V+I+K ++ G ++ Sbjct: 10 RNKIISTILVTSSVWLMAIAGAYYVS---EYANINLPTLNKSSKAPVIIAKRVISEGELI 66 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 +E P N+ I N ++L G + + + I+ + + N Sbjct: 67 NEGDIEEKIMPINNIAKNTI------NVKKDLIGKITVNKLEPNEQIKKYDVTLKENQNN 120 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIRV 176 + R ++ I + + I ND +DV++V + T VV + ++V Sbjct: 121 T------LRPYSIPIKLENLSDLSINSNDFIDVMVVYPKNNNAKTKQVKSTDVVAAKLKV 174 Query: 177 IAIDHN---------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 I E S ++ + + +++ A+ L Sbjct: 175 EYIADTSGNIVKHIGSGESEGQKTPSLLVVKASLEEIQSIEQARREGNL 223 >gi|116255772|ref|YP_771605.1| hypothetical protein pRL110571 [Rhizobium leguminosarum bv. viciae 3841] gi|115260420|emb|CAK03524.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 312 Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 8/154 (5%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 ++ + + L+ G++ TE V E A L + G +TP++L Sbjct: 5 LIAAVIVGLITGVLLYFW-------TESVKNEQTAYAFMRLQPDRKVTRGQAITPDMLAE 57 Query: 69 -VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127 V PE + + L I G + + D G L++++ Sbjct: 58 PVMLPESFGALAKLAVPAASAYQEWLKDRTAASDIPAGSVLLFQYFDDTDGGRLTTMIAP 117 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 GKRA T+ ++ ++AVG ++P +VD++ Sbjct: 118 GKRALTLPVNAAAAVGHFVEPGSYVDILGTVDEP 151 Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 18/173 (10%) Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 +IL V P E V P + G V G P + L + Sbjct: 143 DILGTVDEPVEPVAPAAATQPGAPGQAPAVPGQPPAV---AGQPTAPAQPQSPVEQMLKN 199 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI 183 L + A + + D + S + L N++V+A+ Sbjct: 200 YLTQYPGA-----DENDVNAYRKQAQD----YKLGISSRTRVVTRTFLQNVKVLAVGAAT 250 Query: 184 DSDERVLVGST----ATLELTPMQAKALVAA--QSVAKLSLVLRSIADLNPSS 230 ++ V ++ T+E+TP +A+ L+ A QS L+LVLR+ AD Sbjct: 251 TAEGAVTKANSTYNNVTVEVTPSEAEMLIFAMGQSNGSLNLVLRNPADNTVED 303 >gi|184200331|ref|YP_001854538.1| hypothetical protein KRH_06850 [Kocuria rhizophila DC2201] gi|183580561|dbj|BAG29032.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 223 Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 64/192 (33%), Gaps = 18/192 (9%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A+ V+ + ++ G + L FPE G E G Sbjct: 43 APPGARTAPVVTAAHEVPAGTSLGAGDLAVSQFPEALAPTGAYASPA------EAQGQTS 96 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 V + G P+ ++ G+ + P G AAT+ +S AV ++P D VDVV Sbjct: 97 AVALTPGQPVTSSTVLGP---GVLTGQPTGTTAATVRVSDP-AVLRHVRPGDAVDVVH-H 151 Query: 159 SLSERKPTVTVVLSNIRVIA-------IDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 + R + V+ ++ + L A L + + Sbjct: 152 TDEARSARGRTAARAVTVLWAAGAPSGTGSSLLAAGTDDDAGLVVLAAPRETAAELASLE 211 Query: 212 SVAKLSLVLRSI 223 ++SLVL S Sbjct: 212 GSGRVSLVLVSR 223 >gi|241667103|ref|YP_002985187.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862560|gb|ACS60225.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 318 Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 8/154 (5%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 ++ + + L+ G++ TE V E A L + G +TP++L Sbjct: 5 LIAAVIVGLITGVLLYFW-------TESVKNEQVAYAFMRLQPDRKVTRGQAITPDMLAE 57 Query: 69 -VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127 V PE + + L I G + + D G L++++ Sbjct: 58 PVMLPESFGALAKLAVPAASAYQEWLKDRTAASDIPAGSVLLFQYFDDTDGGRLTTMIAP 117 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 GKRA T+ ++ ++AVG ++P +VD++ Sbjct: 118 GKRALTLPVNAAAAVGHFVEPGSYVDILGTVDEP 151 Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 62/176 (35%), Gaps = 18/176 (10%) Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV---RVPILKGDPIRLEKLVDRGNGG 120 +IL V P E V P L G + P G P + Sbjct: 143 DILGTVDEPVEPVAPAAATQPGAPGQPAALPGQPAVPGQAPPAAGQPQAPAQPQSPVEQM 202 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L + L + A + + D + S + L N++V+A+ Sbjct: 203 LKNYLTQYPGA-----DENDVNAYRKQAQD----YKLGISSRTRVVTRTFLQNVKVLAVG 253 Query: 181 HNIDSDERVLVGST----ATLELTPMQAKALVAA--QSVAKLSLVLRSIADLNPSS 230 ++ V ++ T+E+TP +A+ L+ A QS L+LVLR+ AD Sbjct: 254 AATTAEGAVTKANSTYNNVTVEVTPSEAEMLIFAMGQSNGSLNLVLRNPADNIVED 309 >gi|317506822|ref|ZP_07964596.1| SAF domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254896|gb|EFV14192.1| SAF domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 227 Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 74/184 (40%), Gaps = 17/184 (9%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ DL G + P L P + V +G A ++L G V P+ G+ Sbjct: 52 PVVVAAHDLKPGAALLPADLGIRRLPPDQVPEGAAT------AAEQLVGRTVAGPVRTGE 105 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL----SE 162 + +++ L++ +P+ R + + A+ M++P D VDV+ V E Sbjct: 106 TLTDARVIAPRLAQLATSVPE-ARIVPVRLPD-QALADMLRPGDVVDVITVPQRQSGLPE 163 Query: 163 RKPTVTVVLSNIRVIAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 T L V+A + R G A + + A+ + AA V ++ Sbjct: 164 DATTKQTGLRPPEVLARGAVVLLVSEPERSRSPEGRVALIAMADKPAQTVAAATLVQPVT 223 Query: 218 LVLR 221 ++LR Sbjct: 224 VILR 227 >gi|253576048|ref|ZP_04853381.1| flp pilus assembly protein CpaB [Paenibacillus sp. oral taxon 786 str. D14] gi|251844623|gb|EES72638.1| flp pilus assembly protein CpaB [Paenibacillus sp. oral taxon 786 str. D14] Length = 265 Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 32/232 (13%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 RL+ + V+ + A VA +I + I V ++ +L +V Sbjct: 14 RRLLIVFVALILAGVAVVI------------QSSIVNKQVTTELVYVAADNLTPYSLV-E 60 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG--GL 121 L + V D I D+ + + + I KG P+ L+ G Sbjct: 61 GKLVQRNVVKSEVPDDAIRDLKELEGESWVTTEV---GIPKGIPVSKSMLIPAKESKFGE 117 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVLSNIR 175 S L G + + G MIKP VD + +R+ P+ +L + Sbjct: 118 SLELKDGAMFVGVKTDQVKSAGDMIKPGTIVDAYVYIKGQDRQPSELVTPSDDPLLKGLL 177 Query: 176 VIAID-------HNIDSDERVLVGSTATLELT-PMQAKALVAAQSVAKLSLV 219 + S + + + A +E T P A AL+ Q ++ Sbjct: 178 IKDRQNQNGYEPQREGSGNQNPIPAIAVVETTNPDVAAALIKYQQEGEVYFT 229 >gi|317123663|ref|YP_004097775.1| Flp pilus assembly protein CpaB [Intrasporangium calvum DSM 43043] gi|315587751|gb|ADU47048.1| Flp pilus assembly protein CpaB [Intrasporangium calvum DSM 43043] Length = 267 Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 35/261 (13%), Positives = 81/261 (31%), Gaps = 37/261 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + ++ + A ++ + + + + V +++ + G Sbjct: 1 MNRRLVAVLLAVLLAIAGALLVVNYV------RGADARAIADQQPAKVYLAEKLIPAGTT 54 Query: 61 VTP----NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + ++ G +DD++ N+ +L I G+ + + R Sbjct: 55 LKDAQRTELIVETRVATVARPQGALDDINPENSA-----LLALSDIQPGEFVMASRFGTR 109 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-------------LSER 163 G + +P G A ++++S + +G + P + + Sbjct: 110 PVGEKAIEVPAGMLAMSVELSDPARIGKFVTPGSDIAIFATHGMKLIGEDDATKAFNELN 169 Query: 164 KPTVTVVLSNIRVIAIDH---------NIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 TV+L ++VIA+ + T+ +TP Q+ L + Sbjct: 170 LKGTTVLLDKVQVIAMGDTPLAAPKKAEAGKADEQTPSFLVTVAVTPEQSLRLAHGINEY 229 Query: 215 KLSLVLRSIADLNPSSSEDSD 235 L LR P+ D Sbjct: 230 TLYAGLRGSDVKIPADGHTDD 250 >gi|257057235|ref|YP_003135067.1| SAF domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587107|gb|ACU98240.1| SAF domain-containing protein [Saccharomonospora viridis DSM 43017] Length = 221 Score = 72.1 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 65/183 (35%), Gaps = 20/183 (10%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 + VL++ L +G ++ + + P E DG + + + Sbjct: 55 EPRVPVLVAARTLPLGSTLSEDDVRVAEVPAELRPDGALVTPD------QAVDRRLVGAA 108 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 +G+P+ + +D NG P G + ++ + + +++ VDVV E Sbjct: 109 REGEPLTDLRFLDARNG------PPGSTTVPLRLTDA-GMTRLLRSGTRVDVVTPG---E 158 Query: 163 RKPTVTVVLSNIRVIAIDHNIDSDERVLVGS----TATLELTPMQAKALVAAQSVAKLSL 218 V+ N V+++ + + + + QA + AA +++ Sbjct: 159 GVRQARVLAENATVVSVVTPEPDRDDSPLARQNTPLVLVSVPDEQAPHVAAAALGNPVTV 218 Query: 219 VLR 221 LR Sbjct: 219 TLR 221 >gi|320161465|ref|YP_004174689.1| hypothetical protein ANT_20630 [Anaerolinea thermophila UNI-1] gi|319995318|dbj|BAJ64089.1| hypothetical protein ANT_20630 [Anaerolinea thermophila UNI-1] Length = 376 Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 7/168 (4%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 P + +++IS ++ G+ + + +P++++ +G Sbjct: 39 PTAPGETSAPPTPVEEMTSIVISVQPISRGLEFNETNVTTIPYPKKDLVEGAF-----IT 93 Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDR--GNGGLSSLLPKGKRAATMDISISSAVGGMI 146 +QE+ G + I PI + LVD N + +P G+ A T+ +S S+V + Sbjct: 94 DIQEVLGKRAKFDIEARTPITMTMLVDPTTKNSPAAFQIPPGQVAITIPVSKLSSVAYGL 153 Query: 147 KPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST 194 +P DHV+V++ L + P L N + + + S Sbjct: 154 EPGDHVNVIVSLLLVDIDPGFQSKLPNNTGVVVAPGPSGEGGPTTISA 201 Score = 40.5 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 71/237 (29%), Gaps = 47/237 (19%) Query: 51 SKGDLAVGMVVTPNIL---EWVAFPEE----------NVFDGFIDDVHQPNAMQELDGVL 97 +K D+ +T +L P + + V + V+ Sbjct: 103 AKFDIEARTPITMTMLVDPTTKNSPAAFQIPPGQVAITIPVSKLSSVAYGLEPGDHVNVI 162 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD---- 153 V + ++ DP KL N G+ IS S + + +D Sbjct: 163 VSLLLVDIDPGFQSKL--PNNTGVVVAPGPSGEGGPTTISASVSKTDSLSGRTELDPTLG 220 Query: 154 --VVMVRSLSER-KPTVTVVLSNIRVIAIDH------------------------NIDSD 186 + ++ S +R + ++ + V+ + Sbjct: 221 QPIYVIPSEPQRPRLVSQTLIQDAIVLRLGDFTSTSQQQAQTAAQQQPTPAPATGQAQQP 280 Query: 187 ERVLVGSTATLELTPMQAKALVAAQ-SVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 T TL +TP A L + +L+LV+RS D ++E + + ++ Sbjct: 281 AEAPKPDTVTLIVTPQDAVTLNYLMLAGGRLNLVMRSAGDSQRIATEPVTLQFILDQ 337 >gi|111022595|ref|YP_705567.1| hypothetical protein RHA1_ro05629 [Rhodococcus jostii RHA1] gi|110822125|gb|ABG97409.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 237 Score = 71.7 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 76/183 (41%), Gaps = 14/183 (7%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + V+++ DL G+V+T +E V + DG + A+ ++DG + Sbjct: 63 PDSARSAVVVAARDLQPGVVLTDADVELVDLEAGTLPDGAVT------ALADVDGRTLAG 116 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---- 156 P G+ + +++ ++ + R + ++ AV +++ D VDV+ Sbjct: 117 PTRAGEALTDVRVLGPRLAAAAAGM-DDARIVPVRLADP-AVTELLREGDRVDVLTVDPD 174 Query: 157 VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 + +R+ TV+ S V+ + + + ++ L L +A + AA + + Sbjct: 175 TPANPDRRSGATVLASRAVVVLVTPSENGRDQRE--RVVMLALPASEATTVAAASLTSAI 232 Query: 217 SLV 219 ++ Sbjct: 233 TVT 235 >gi|229587471|ref|YP_002860509.1| hypothetical protein CLJ_0202 [Clostridium botulinum Ba4 str. 657] gi|229260129|gb|ACQ51166.1| hypothetical protein CLJ_0202 [Clostridium botulinum Ba4 str. 657] Length = 242 Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 80/229 (34%), Gaps = 29/229 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + I+V+ L+A A + + T N + V+I+K + G ++ Sbjct: 10 RNKIISTILVTSSVWLMAIAGAYYVS---EYANINLPTLNKSSKAPVIIAKRVINEGELI 66 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 +E P N+ I N ++L G + + + I+ + + N Sbjct: 67 NEGDIEEKIMPINNIAKNTI------NVKKDLIGKITVNKLEPNEQIKKYDVTLKENQNN 120 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIRV 176 + R ++ I + + I ND +DV++V + T VV + ++V Sbjct: 121 T------LRPYSIPIKLENLSDLSINSNDFIDVMVVYPKNNNAKTKQVKSTDVVAAKLKV 174 Query: 177 IAIDHNI---------DSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 + E S ++ + + +++ A+ L Sbjct: 175 EYMADTSGNIVKHIGNGESEGQKTPSLLVVKASLEEIQSIEQARREGNL 223 >gi|311697131|gb|ADQ00003.1| pilus assembly, Flp-type CpaB [marine bacterium HP15] Length = 305 Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 84/252 (33%), Gaps = 28/252 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVS------------PHHVQTEEVITENPAKFINV 48 M + + + + + L+ Q + E Sbjct: 1 MNFRFVHAVPALVLSLIAISLAVYGLLLDTPGTARQMSSLASEGQVQRPTEEPELPSFTY 60 Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +I+K L G V+ + + + G + + KG PI Sbjct: 61 VIAKQTLQAGEVLERTAV--------MAVESTEELEGLVELESLPFGEPLTARVDKGLPI 112 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168 L + + LL +G +A ++++ S+VGG+I+P D VD+ S + V+ Sbjct: 113 SRSLLELQNP--VQQLLERGHKAVAVELTNLSSVGGLIRPGDSVDIFASFSEEDGASAVS 170 Query: 169 V-VLSNIRVIAIDHNIDSDERVLVGS-----TATLELTPMQAKALVAAQSVAKLSLVLRS 222 + S I V+A+ + + T L + L A S ++L+ Sbjct: 171 TRLFSAIPVLAVRGATSVTDDLDDDERRRNPTMVLAIPESDMSKLTLALSESRLTFAATK 230 Query: 223 IADLNPSSSEDS 234 + +P S+ + Sbjct: 231 PIEEDPVSTVTA 242 >gi|220913382|ref|YP_002488691.1| hypothetical protein Achl_2637 [Arthrobacter chlorophenolicus A6] gi|219860260|gb|ACL40602.1| conserved hypothetical protein [Arthrobacter chlorophenolicus A6] Length = 258 Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 89/265 (33%), Gaps = 43/265 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+G + + V A+ ++ + V + + VL+ + + G Sbjct: 1 MK-ARLLGGIAALVIAIAGTVLLIAYVQG-----ADARAMAGTETAEVLVVQAPIPAGTP 54 Query: 61 VTP--NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + ++ + P+ + + + ++E + V ++ G+ + +LV+ + Sbjct: 55 ASEISGMVAKKSLPKSALTGDTVTN------LKEEGTKVTAVSLVPGEQLLASRLVEAAS 108 Query: 119 --GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-------VRSLSERKPTVTV 169 G +P G + ++ + I VGG I D V V + + + + Sbjct: 109 FMGPSRVAVPGGMQEISLKLPIERVVGGKIAAGDTVGVFISLTETSGSGDNAAQSSGTQL 168 Query: 170 VLSNIRVIAI-------------------DHNIDSDERVLVGSTATLELTPMQAKALVAA 210 + V A ++ + T+ + A+ +V A Sbjct: 169 TFHKVLVTATQYSNGSPSQASSGDAGASEGSLSSNENQSDGNYLITVASNSVDAERMVYA 228 Query: 211 QSVAKLSLVLRSIADLNPSSSEDSD 235 K+ L + D +S D Sbjct: 229 AEFGKVYLS-KEPKDATEGNSGVVD 252 >gi|37676252|ref|NP_936648.1| hypothetical protein VVA0592 [Vibrio vulnificus YJ016] gi|326424173|ref|NP_762070.2| Flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus CMCP6] gi|37200793|dbj|BAC96618.1| hypothetical protein [Vibrio vulnificus YJ016] gi|319999556|gb|AAO07060.2| Flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus CMCP6] Length = 272 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 99/267 (37%), Gaps = 24/267 (8%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVGM 59 K ++M V +F +A + + +TEEV+ P + +L + Sbjct: 11 KKDKIMNRAVIILFLSLAIFSTLFFLMGDMFETEEVVAAEPVIEPTVVLLELTQGVEKSG 70 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 +V+ ++ + + N + G L P+LKG + + + + G+ Sbjct: 71 IVSKSVYKEIEVKLSEAHSN---RHALKNELNIQPGALFNRPLLKGTILSNDVISNPGDR 127 Query: 120 -GLSSLLPKGKRAATMDISISSAVGG-MIKPND----------HVDVVMVRSLSERKPTV 167 + L K + + S S+ + ++P D +++ Sbjct: 128 DYMFLSLKKDEVPYYYEPSSSNIIENITLQPGDSVSFVSTTSSRSNLLETGYKDIGHLVS 187 Query: 168 TVVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +++S+ +VI + + N+++ + ++ + L Q L AQ + +S+V S+A Sbjct: 188 KIIISDAKVIQVIKSERNVNTTKASESQNSLVIALKVPQVLKLEMAQKIGDISIVPSSVA 247 Query: 225 DLNPSSSEDSDVWDVQEEGKEIQIIKA 251 D+ E+ ++ ++ Sbjct: 248 ----KRYLSIRSSDILEDQFGVRELRG 270 >gi|289675700|ref|ZP_06496590.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. syringae FF5] Length = 160 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 28/170 (16%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKF-------------- 45 M + + V + AL+A + + + P + P Sbjct: 1 MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAVVIPPSEPVTTETAIQTPPTPHVEE 60 Query: 46 ---INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T + L + G A+ ++ G + Sbjct: 61 ALRHNVVVLARDIPAYTAITADDLTIERL--KVAPLGSF------EAIDKIVGRSSWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 G + G L+ ++ +RA + + + G + P D+V Sbjct: 113 TAGSWLTESNF--EAGGTLARMIRPHERALALQVDEVTGASGQLSPGDYV 160 >gi|300781680|ref|ZP_07091534.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] gi|300533387|gb|EFK54448.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] Length = 212 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 71/177 (40%), Gaps = 20/177 (11%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 VL +++ G ++ + +E PE V DG + + +++G +V G+ Sbjct: 43 VLAFTREVSPGEPLSADDVELQRMPEAIVPDGAF------DQVSDVEGQIVASTASAGEV 96 Query: 108 IRLEKLVDRGNGGLSSLLPKGKRA----ATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 + +L+ L S L G RA + ++ + M+ D V VV + + Sbjct: 97 VTPTRLLGPD---LVSALVPGDRADYTMVPVKLAEPDIIP-MLHHGDRVSVVTINHGEQE 152 Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 T+ + + V+A + L L +A+A+ AA + L++VL Sbjct: 153 GAARTIATNGVVVLA------GGAEDSPAGSVLLLLLHDEAEAVAAASLSSPLAVVL 203 >gi|251795111|ref|YP_003009842.1| SAF domain protein [Paenibacillus sp. JDR-2] gi|247542737|gb|ACS99755.1| SAF domain protein [Paenibacillus sp. JDR-2] Length = 237 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 71/200 (35%), Gaps = 25/200 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R GI + AL++G++ L +Q + + V+++K + G Sbjct: 1 MNRRRNAGI--GLLAALLSGVLVYGLFQLQKLQVTR------GETVEVIVAKQFVEAGRR 52 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + + P E + ++ G+ +P+ +PI K+ Sbjct: 53 LTEADIAYKRIPREG------YEHEMLVDAKQAVGMETVIPLGTNEPILGWKIDKYH--- 103 Query: 121 LSSLLPKG-KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 LLP G + + ++ I+ D V V + + + + V ++ Sbjct: 104 ---LLPTGLESTFQIPRDYVRSISNGIRAGDKVTVYLSGENEPSRRIFDSL---VTVASV 157 Query: 180 DHNIDSD-ERVLVGSTATLE 198 + + + + + + +L Sbjct: 158 KSSSNVEIDNMKDPNLLSLA 177 >gi|220913391|ref|YP_002488700.1| SAF domain protein [Arthrobacter chlorophenolicus A6] gi|219860269|gb|ACL40611.1| SAF domain protein [Arthrobacter chlorophenolicus A6] Length = 251 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 62/208 (29%), Gaps = 29/208 (13%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTP--NILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + VL+ + + G + L P + + ++ Sbjct: 29 ADARAMASTNPKKVLVVEKPIPAGTPINDMTASLVIEDVPATAIAPTALT------SLDS 82 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGN--GGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 G + V ++ G+ + E+LV +P G + T ++ VGG I+ D Sbjct: 83 KAGTVAAVDLVPGEQLLAERLVAPEALKAEGGVQIPPGLQEVTFELEPKRVVGGRIQAGD 142 Query: 151 HVDVVMVRSLSER-----KPTVTVVLSNIRVIAIDHNIDSDERVLVGS------------ 193 HV + + + + L + V AI + Sbjct: 143 HVGIGFSFAGGADKAKPADASTQLTLRKVTVTAIQRAPQAASAEAPADGSNPQDTTLPQG 202 Query: 194 --TATLELTPMQAKALVAAQSVAKLSLV 219 T+ + + A ++ A + L L Sbjct: 203 SLMVTVAVNDIDATKIIYASNNGDLWLT 230 >gi|302521637|ref|ZP_07273979.1| conserved hypothetical protein [Streptomyces sp. SPB78] gi|302430532|gb|EFL02348.1| conserved hypothetical protein [Streptomyces sp. SPB78] Length = 166 Score = 71.3 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 16/160 (10%) Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143 + L G + + KG ++ + +V+R L G++ + I ++ V Sbjct: 3 DTAVTQLGALRGKIAVTTLHKGSLLQDDMIVNRP------ALRAGEQEIAIMIDAATGVA 56 Query: 144 GMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNI-------DSDERVLVGST 194 G I P V++ +K +++ +V+ + D+ R Sbjct: 57 GKITPGSSVNIYATFKGQNENQKDESRLIVERAQVLDVGKLTPFDQNNDDNRNRSTEAVP 116 Query: 195 ATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSED 233 T L A+ + A+S A + L L + P+++ Sbjct: 117 ITFGLGTTDAQRVAYAESFATHVRLALVGAGEQPPAAAGP 156 >gi|312126639|ref|YP_003991513.1| SAF domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311776658|gb|ADQ06144.1| SAF domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 208 Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 34/229 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MKL ++ + + A L++ T N ++ ++++K D+ G Sbjct: 1 MKLKKIGLFFIFLILAAGLAFAEYYLLTN---------TANKPQYQLIIVAKQDIPAGAQ 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + L +++ G I G+PI E L D Sbjct: 52 ITLDKLSVARVDVRTPVHAATTR-------KQILGRYALYDIKAGEPIIPEHLTDLSIDT 104 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV------LSNI 174 L+ G + + I I D +++ V V V+ +I Sbjct: 105 LA----NGMKLTAVRIDPVPY--DFINIGDEIELGCVIQDKTLSWRVRVIQVYDANFRDI 158 Query: 175 RVIAIDHNIDSDERVLVGSTAT--LELTPMQA--KALVAAQSVAKLSLV 219 R ++ + + L + A K L +A+ L ++ Sbjct: 159 R--SVKEQLQQTNAQQAPALMIGYLAVAGDDATIKTLKSAEKQGTLFVI 205 >gi|190149866|ref|YP_001968391.1| flp operon protein C [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914997|gb|ACE61249.1| flp operon protein C [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 272 Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 61/204 (29%), Gaps = 18/204 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAM--------RLVSPHHVQTEEVITENPAKFINVLISK 52 M L+ I + + G+ + V E + K I + Sbjct: 1 MNYRVLLIISLVIIVLGFGGLFMLPTNEGTTTENVGTTTTLEESSNSPVTEKVITTVTLN 60 Query: 53 GDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIR 109 DL G ++ P D+ + L G LV + G + Sbjct: 61 RDLEKGTLIQPEDYTLSELTVAETSPLVDSDLKALLDAEPNHSLQGFLVTENLKAGSLLT 120 Query: 110 LEKLVDRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL----SE 162 ++ + L SL P + A + + + ++ D V V V+ Sbjct: 121 PNLIITPEDPRFILLSLDPSQEVAYRIYVQDAEQYILDSVRGGDLVSVYSVQQDLAHPER 180 Query: 163 RKPTVTVVLSNIRVIAIDHNIDSD 186 + ++ + N++V+ + + Sbjct: 181 EQNSLVKIADNLKVLQVKSFTQEE 204 >gi|119963620|ref|YP_948619.1| Flp pilus assembly protein [Arthrobacter aurescens TC1] gi|119950479|gb|ABM09390.1| putative Flp pilus assembly protein CpaB family [Arthrobacter aurescens TC1] Length = 248 Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 94/237 (39%), Gaps = 31/237 (13%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 TRL+G +V+ V A+V ++ + V Q + + + ++VL+ + + G + Sbjct: 2 KTRLLGGIVAVVLAIVGTLLLVTYV-----QAADARAQKDLQPVDVLVIQSQVPEGADLQ 56 Query: 63 --PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-- 118 + ++ + P +V +G + ++ ++G + ++ G+ + +LVD + Sbjct: 57 QIKSAVKLASLPAASVPNGALK------SLSGMEGKVAGAELMPGEALLGNRLVDPNSLA 110 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIR 175 S +P G + ++ + VGG + D V VV++ + + + +V + Sbjct: 111 APGSVPVPDGLQEVSVQLDAQRVVGGRLAAGDTVGVVVLVGENGQSDTDASAQLVFHKVL 170 Query: 176 VIAIDHNIDSDERVLVGST-------------ATLELTPMQAKALVAAQSVAKLSLV 219 V ++ + S+ TL + + A +V + L Sbjct: 171 VTSVQRATARNSNTAQASSEQANTQLPEGSFIVTLARSDVDATKIVYGAKYGDIWLT 227 >gi|32477848|ref|NP_870842.1| hypothetical protein RB13066 [Rhodopirellula baltica SH 1] gi|32448405|emb|CAD77920.1| hypothetical protein-transmembrane prediction [Rhodopirellula baltica SH 1] Length = 590 Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 89/283 (31%), Gaps = 38/283 (13%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP---NILEW 68 + AL G LV T+E P + V I L + P Sbjct: 303 AVTSALELGATVNVLVRSGRPDTDEPSNNVPEGMVAVPIPGQTLLAYQTIRPTSFEDPAT 362 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPK 127 V + + +L G + R + PI+ L+ GLS P Sbjct: 363 AYVRTIQVPAETASQSNWITDLSKLVGRIPRHDLPATVPIQEGDLMPVGTMAGLSGATPP 422 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----------------RKPTVTVV 170 G+ +D G + H+D+V R+ E ++ +V + Sbjct: 423 GRVLFFLDTEGLIG-GDAFEFGQHLDLVASRTADEPRGGSRGGFANVTLTDAQRTSVEPI 481 Query: 171 LSNIRVIAIDHNIDS-------DERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRS 222 ++ V+ + + D + + + + P Q L A +V L +RS Sbjct: 482 ADDVIVMMPTRSPGNPTAGKSKDTKDSPSAKLIVAVRPEQVAHLEYAVAVGSNLRATVRS 541 Query: 223 --------IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 +++ P+ + +D + K+ I G ++ Sbjct: 542 GRVDSTDLVSERQPAGRVAAMRFDPLADTKQTDIYVGGSSQSQ 584 >gi|312621778|ref|YP_004023391.1| SAF domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202245|gb|ADQ45572.1| SAF domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 209 Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 71/230 (30%), Gaps = 35/230 (15%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+L ++ V V A L++ N ++ ++++K D+ G Sbjct: 1 MRLKKIGLFFVFLVLATGLAFGEYYLLTNI---------ANKPQYQLIIVAKQDIPAGAQ 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + L +H ++ G I G+PI E L + Sbjct: 52 ITLDKLSVARV-------DIQTPIHAAKTRNQILGKYALYDIKAGEPIIPEHLTNLSVNT 104 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV------LSNI 174 L+ G + T+ I + D +++ V V V+ +I Sbjct: 105 LA----NGMKLTTVRIDPVPY--DFLNIGDEIELGCVIQNKTLSWRVRVIQVYDPNFRDI 158 Query: 175 RVIAIDHNIDSDERVLVGSTAT---LELTPMQA--KALVAAQSVAKLSLV 219 R ++ + L + + K L A+ L ++ Sbjct: 159 R--SVKEQLQQTNAAQQAPALMIGYLAVAGDDSTIKTLKLAERQGILFVI 206 >gi|227504186|ref|ZP_03934235.1| SAF domain protein [Corynebacterium striatum ATCC 6940] gi|227199230|gb|EEI79278.1| SAF domain protein [Corynebacterium striatum ATCC 6940] Length = 226 Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 33/231 (14%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + L+ V++ V + AG+ A+ ++ D+ G + Sbjct: 16 RRSLLVRRVLAAVLIIGAGLSALHARRELPQA---------------VVFARDVPAGSTL 60 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120 L P + D +D +++L+G +V G+ + +L+ Sbjct: 61 QAEDLTLAPVPSHILPDSAVDTD-----LEKLEGRVVVAAAASGELVTDARLLSPELVDN 115 Query: 121 ---LSSLLPKGKRAATMDIS-ISSAVGGMIKPNDHVDVVMVRSLSE----RKPTVTVVLS 172 S+L G+ + + + + + D V+V+ S S+ P +V+ + Sbjct: 116 LVNNSTLNTSGEESHMIPLKLAEPDILPHLHHGDTVNVIAGNSNSDLIGTTSPAGSVIAA 175 Query: 173 NIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 RV+A + D ++ ST L L QA A+ +A L++V+ Sbjct: 176 GGRVVATTSSRDGED----ASTLLLALPASQADAVASASLSQPLTVVIVGQ 222 >gi|310830431|ref|YP_003965532.1| hypothetical protein PPSC2_p0070 [Paenibacillus polymyxa SC2] gi|309249898|gb|ADO59464.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2] Length = 291 Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 76/220 (34%), Gaps = 27/220 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + + V + + + Q ++ + VL++K D++ G Sbjct: 1 MRGKNKLLLTVLLITFVATSGMFYY-------QNVYAPKQDEKNKVFVLVAKKDISEGAA 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 TP+ + + + V FI + E+ G + + + + Sbjct: 54 FTPDNIGAIKMDKNMVLPNFITN------FDEMKGKTASTDLFSNEIVTKRQ-------- 99 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 ++ + G + + I ++ + IK D V V + ++ + + V+ ++ Sbjct: 100 -TTGVSDGSKKFKLGIEAAN-MPTSIKNGDAVRVFVQTTIGNKIFE---IFDKKEVVNVN 154 Query: 181 -HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 S + + + L ++ +A AQ + +V Sbjct: 155 FKKSASGQESQLVESVDLLVSDKEAVTYFDAQKAGSIFIV 194 >gi|15602718|ref|NP_245790.1| hypothetical protein PM0853 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721162|gb|AAK02937.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 270 Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 84/261 (32%), Gaps = 28/261 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAM----RLVSPHHVQTEEVITENPAKFINVLISKGDLA 56 M L I + + V GI+ M + + P K I + K D+ Sbjct: 1 MNYRMLFIISLLTLVVGVGGILFMPTGDSSSAGEGGVALSETEKKPEKLITLAELKRDIK 60 Query: 57 VGMVVTPNILEWVAFPEEN---VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 G ++ + + + DV + + L G LV + G + + Sbjct: 61 AGSLLQVEDYSLTEIKVTEDNPLTNNDLTDVLALSKFKTLQGHLVAENLKSGSLLSPSTV 120 Query: 114 VDRGNGGLSSLLPKGKRAATMDI---SISSAVGGMIKPNDHVDVVM------VRSLSERK 164 + + K+ + + ++ D+V V R S K Sbjct: 121 ISPNDSRFLLSSLDTKQEIAFRVYLKPTERYILDTLRSGDYVSVYNQKIAYRAREESIDK 180 Query: 165 PTVTVVLSNIRVIAI----------DHNIDSDERVLVG-STATLELTPMQAKALVAAQSV 213 ++ +++ + V+ + D DE +L++ QAK + Sbjct: 181 NSLIKIINKLLVLQVNVFQVLDENNDSVKKQDELAGEYIGYISLKVNAKQAKMFYELEKD 240 Query: 214 AKLSLVLRSIADLNPSSSEDS 234 +KL +VL S+ + S++ Sbjct: 241 SKL-IVLPSVDEAESSNNRGV 260 >gi|327538081|gb|EGF24771.1| conserved hypothetical protein, secreted [Rhodopirellula baltica WH47] Length = 590 Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 88/283 (31%), Gaps = 38/283 (13%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP---NILEW 68 + AL G LV T+E P + V I L + P Sbjct: 303 AVTSALELGATVNVLVRSGRPDTDEPSNNVPEGMVAVPIPGQTLLAYQTIRPTSFEDPAT 362 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPK 127 V + + +L G + R + PI+ L+ GLS P Sbjct: 363 AYVRTIQVPAETASQSNWITDLSKLVGRIPRHDLPATVPIQEGDLMPVGTMAGLSGATPP 422 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----------------RKPTVTVV 170 G+ +D G + H+D+V R+ E ++ +V + Sbjct: 423 GRVLFFLDTEGLIG-GDAFEFGQHLDLVASRTADEPRGGSRGGFANVTLTDAQRTSVEPI 481 Query: 171 LSNIRVIAIDHNIDS-------DERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRS 222 ++ V+ + + D + + + P Q L A +V L +RS Sbjct: 482 ADDVIVMMPTRSPGNPTARKSKDSKDSPAPKLIVAVRPEQVAHLEYAVAVGSNLRATVRS 541 Query: 223 --------IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 +++ P+ + +D + K+ I G ++ Sbjct: 542 GRVDSTELVSERQPAGRVTAMRFDPLADTKQTDIYVGGSSQSQ 584 >gi|149188864|ref|ZP_01867154.1| hypothetical protein VSAK1_05925 [Vibrio shilonii AK1] gi|148837284|gb|EDL54231.1| hypothetical protein VSAK1_05925 [Vibrio shilonii AK1] Length = 148 Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 21/139 (15%) Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPTVTVVLSNIRV 176 +++S + + I+P +DV+ V S ++ R ++ L +++V Sbjct: 1 MTLYPLEVSDKNLINDYIRPGSFIDVLTVSSPNDNLAGNVDKPKRFRGVKASMFLKHVKV 60 Query: 177 IAIDH--------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 + + S + +T +E+ P L AQ + + RS P Sbjct: 61 LNVGDDKGDNSSVTARSPTKENGLTTVVIEVKPDDLAKLALAQRTMHIEI-YRSQTYKQP 119 Query: 229 SSSEDSDVWDVQEEGKEIQ 247 +E ++ D +E++ Sbjct: 120 EYAEVRNIIDNYTGIEELR 138 >gi|320158382|ref|YP_004190760.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O] gi|319933694|gb|ADV88557.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O] Length = 257 Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 92/266 (34%), Gaps = 26/266 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + +F+ + ++ + V E V+ + +L + + Sbjct: 1 MNRAVIILFLSLAIFSTLFFLMGDMFETEEVVAEEPVV----EPTVVLLELTQGIEKSGI 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 V+ ++ + V ++ N G L P+LKG + + + + G+ Sbjct: 57 VSKSVYKEVEVKLSEAHSNRYTLKNELNIQP---GALFNRPLLKGTILSNDVISNPGDRD 113 Query: 120 GLSSLLPKGKRAATMDISISSAVGG-MIKPND----------HVDVVMVRSLSERKPTVT 168 + L K + + SS + ++P D +++ Sbjct: 114 YMFLSLKKDEVPYYYEPERSSIIENITLQPGDSVSFVSTTSSKSNLLETGYQDIGDLVSK 173 Query: 169 VVLSNIRVIAIDHNIDSD---ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +++S+ +VI + + D ++ + L Q L AQ + +S+V S+A Sbjct: 174 IIISDAKVIQVIKSEKDDKESGAEKSPNSLVIALKVPQVLKLEMAQKIGDISIVPSSVA- 232 Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKA 251 D+ E+ ++ ++ Sbjct: 233 ---KRYLSIRSSDILEDQFGVRELRG 255 >gi|46143342|ref|ZP_00204448.1| hypothetical protein Aple02001966 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208038|ref|YP_001053263.1| flp operon protein C [Actinobacillus pleuropneumoniae L20] gi|126096830|gb|ABN73658.1| flp operon protein C [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 272 Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 61/204 (29%), Gaps = 18/204 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAM--------RLVSPHHVQTEEVITENPAKFINVLISK 52 M L+ I + + G+ + V E + K I + Sbjct: 1 MNYRVLLIISLVIIVLGFGGLFMLPTNEGTTTENVGTTTTSEESSNSPVTEKVITTVTLN 60 Query: 53 GDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIR 109 DL G ++ P D+ + L G LV + G + Sbjct: 61 RDLEKGTLIQPEDYTLSELTVAETSPLVDSDLKALLDAEPNHSLQGFLVTENLKMGSLLT 120 Query: 110 LEKLVDRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL----SE 162 ++ + L SL P + A + + + ++ D V V V+ Sbjct: 121 PNLIITPEDPRFILLSLEPSQEVAYRIYVQDAEQYILDSVRGGDLVSVYSVQQDLAHPER 180 Query: 163 RKPTVTVVLSNIRVIAIDHNIDSD 186 + ++ + N++V+ + + Sbjct: 181 EQNSLVKIADNLKVLQVKSFTQEE 204 >gi|269836549|ref|YP_003318777.1| Flp pilus assembly protein CpaB [Sphaerobacter thermophilus DSM 20745] gi|269785812|gb|ACZ37955.1| Flp pilus assembly protein CpaB [Sphaerobacter thermophilus DSM 20745] Length = 326 Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 9/119 (7%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 NV+++ D+ V++ + +E V G A ++ G+ V Sbjct: 39 AEPTKANVVVAARDIPANTVLSEDDIEIAEVDATGVAPGSAT------APAQVVGMAVSG 92 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 ++KG I L+ GL+ L +G RA + + +A+GGMI+P+D +D++ Sbjct: 93 NLVKGQQILSANLLAP---GLTFDLAEGHRAIALPVDRINALGGMIRPDDRIDIIYSIR 148 >gi|134298671|ref|YP_001112167.1| hypothetical protein Dred_0804 [Desulfotomaculum reducens MI-1] gi|134051371|gb|ABO49342.1| hypothetical protein Dred_0804 [Desulfotomaculum reducens MI-1] Length = 199 Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 76/216 (35%), Gaps = 34/216 (15%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK+ + + V+ VFA+V I + K + V + DL Sbjct: 1 MKIKKHNIFYVLFVVFAVVTAIGVFHGYNT------------VTKKVPVAKAGADL---- 44 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 V + G + E+ G+ + I G +R + + Sbjct: 45 -VQDEMASSKNLVIGQTPIGALQK-DTVRHPDEIKGMYAKGFIPAGTVLRKSMFISFKDA 102 Query: 120 GLSSLLP--KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 G+++ L GK A ++ I ++VGG +K V++ SER+ + V+ Sbjct: 103 GVAARLANYPGKIAVSLGADIYTSVGGELKREYKVNIKSGYKGSERE-----IAKEAIVL 157 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213 + E L +TP ++ L +A+S Sbjct: 158 S--------EPTAKKEAIVLAMTPEESTLLTSARSN 185 >gi|253577450|ref|ZP_04854765.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843150|gb|EES71183.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 377 Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 43/298 (14%), Positives = 93/298 (31%), Gaps = 45/298 (15%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMR-----------LVSPHHVQTEEVITENPAKFINVLI 50 K ++ I S V LV+ I ++ + + + Q E++ T +L+ Sbjct: 9 KPIVIIAIGFSFVLLLVSTIFVLQHQAQQKRLQQQMRAHYEQQIEQLKTNEQQGKTRILV 68 Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + + G + ++ V V D + G + ++ + P+ Sbjct: 69 AARPIPAGKTLGNGDIQAVEVVHALVPSDSFKDPQM------VVGKIAKIDLQSNTPLIA 122 Query: 111 EKLVDRG--------NGGLSSLLPKGK---RAATMDISISSAVGGMI--------KPNDH 151 L + G LP + + I+ + ++ Sbjct: 123 SMLYEEGAIPRDLRMQEFNVIQLPTHLQKDQVVDVRINFPTGEDYIVLSKKKVRDLSGMI 182 Query: 152 VDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDERVL----VGSTATLELTPMQAK 205 V + M + L ++ A+ + + + L+L Sbjct: 183 VRLEMNEPEILMASSAIIDAYLQGAKLYALPYIEPGLQEAAIANYPANPKVLDLMDRDPN 242 Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI-QIIKAGVIVNKDGEGI 262 L A++ +L+ LRS D N + D+D V + Q ++ IV + G + Sbjct: 243 VLEKAKT--ELARQLRSRLDNNLKAMSDADKLRVVSGSVTVQQQLQNDRIVTQQGNAM 298 >gi|119714038|ref|YP_919180.1| SAF domain-containing protein [Nocardioides sp. JS614] gi|119525947|gb|ABL79317.1| SAF domain [Nocardioides sp. JS614] Length = 259 Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 20/243 (8%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K R G ++ V ++A +IA + + EE VL+ + G + Sbjct: 36 KAPRKYGQMLMSVLVVIAAVIAGGWLYVNKGGVEE-----------VLVVAQPIPAGHPI 84 Query: 62 TPNILEWVAFPE-ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 T + + P + ID + + + G V +L G + + L Sbjct: 85 TEDDVRTSKDPLLVSRSVSGIDGAILVSDVDSVFGQRTTVALLPGQVLTQDSLTSD---- 140 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L +GKR +++ + V + P VD + V + + + + A Sbjct: 141 --LLPQEGKRLIAVNL-PAGRVPDTLAPGSVVDAIAVPQEGQSGDP-KALDDPVVISAGA 196 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 S + T+ + AK + A +V +L+L+ I + +P+ S D Sbjct: 197 TVYSSKQSQDGTVVVTILIAETDAKTVAAYGAVGQLTLLQAPITEGDPADSAPQDDSATG 256 Query: 241 EEG 243 +G Sbjct: 257 GQG 259 >gi|269125159|ref|YP_003298529.1| SAF domain-containing protein [Thermomonospora curvata DSM 43183] gi|268310117|gb|ACY96491.1| SAF domain protein [Thermomonospora curvata DSM 43183] Length = 378 Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 12/129 (9%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 + + VL + DL G + + V P V DG + D + G Sbjct: 40 AAVHPPAPAGVRVLTAARDLPGGTELREQDIRPVMMPSAAVPDGALRD--------RVVG 91 Query: 96 VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 ++ P+ +G+ + +LV GL G AA + ++ +A +++P D +DV Sbjct: 92 RVLAGPMRRGEIVTDTRLV---GDGLLKGYGPGTVAAPIRVAD-TAALRLLRPGDRIDVF 147 Query: 156 MVRSLSERK 164 Sbjct: 148 ATAFSGGSG 156 >gi|296140955|ref|YP_003648198.1| SAF domain protein [Tsukamurella paurometabola DSM 20162] gi|296029089|gb|ADG79859.1| SAF domain protein [Tsukamurella paurometabola DSM 20162] Length = 218 Score = 69.0 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 69/200 (34%), Gaps = 11/200 (5%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 A V V +E VL + +L G + L P E + Sbjct: 29 AAAGVLTVLALVVAVTSEPSGPQTEVLTAARELGPGGRLADADLRLTTVPAELAPPDALT 88 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV 142 + + G V P+ G+ + +++ G + G R + + ++ + Sbjct: 89 ------STGQAVGRSVTGPVGAGEILTDRRVLTDRTAG---QIRPGSRLVPVALQDAATM 139 Query: 143 GGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTP 201 +++P D VDVV R + L R + + TA L +T Sbjct: 140 -DLLRPGDVVDVVAQRKARAGEREDDGTPLVLARSATVAVAAAAQGPRQQARTAMLAMTE 198 Query: 202 MQAKALVAAQSVAKLSLVLR 221 +A A+ AA + LS+V R Sbjct: 199 TEAHAVAAAALSSPLSVVFR 218 >gi|331694666|ref|YP_004330905.1| SAF domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949355|gb|AEA23052.1| SAF domain protein [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 69/192 (35%), Gaps = 12/192 (6%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 + + V+++ DL G + + ++P+ V G A Sbjct: 41 TAVVLALRPAADPGVPVVVAVHDLPAGTTLAAADVAVRSWPQGLVPGGV------AAAPS 94 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS-ISSAVGGMIKPND 150 ++ G ++ P G+P+ +LV +++ A ++ + V G++ P Sbjct: 95 DVTGRVLAGPARAGEPLTDLRLVGPALAVVATGRAD---AVSVPVRLADPGVAGLLTPGS 151 Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210 VDVV + ++ + + V+ G + L P QA L AA Sbjct: 152 LVDVVTPGATADEAVVLASAAAVTAVL--PAENGPVAGAAKGRLVLVALPPAQATRLAAA 209 Query: 211 QSVAKLSLVLRS 222 ++++ LR Sbjct: 210 SLTQQVAITLRP 221 >gi|312883307|ref|ZP_07743033.1| hypothetical protein VIBC2010_04704 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368923|gb|EFP96449.1| hypothetical protein VIBC2010_04704 [Vibrio caribbenthicus ATCC BAA-2122] Length = 250 Score = 69.0 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 34/263 (12%), Positives = 91/263 (34%), Gaps = 27/263 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +S + + + S +++ ++ G + Sbjct: 1 MNRN------ISILLVTLFLFTTIYFFSQDSKDKPLQEEIVNEDVLSIYCINKNVKKGEL 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGNG 119 V N + + E + + D + G + + + +G+ + K LV N Sbjct: 55 VDRNFISIIDVKESELSNLEYIDSNNEIPS----GSVFKTDLKEGEFLSQSKYLVPGDND 110 Query: 120 GLSSLLPKGKRAATMD-ISISSAVGGMIKPNDHV----------DVVMVRSLSERKPTVT 168 +S LL + + +S +A + D + +V++ T Sbjct: 111 YISFLLDSDELPYLYENVSSFTAKSLNLNSGDRISFISTMSSESNVLISGYDDINNVTSK 170 Query: 169 VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 +V++N RV+ + + ++ + L P + L ++ ++++S++ S + N Sbjct: 171 IVINNARVLQVLREKKEETDEEN-TSIVVALKPKEILKLELSRKISEVSIIPSSFKNKNL 229 Query: 229 SSSEDSDVWDVQEEGKEIQIIKA 251 ++ D+ E ++ ++ Sbjct: 230 ----KVEINDILESKIRVRELRG 248 >gi|116671477|ref|YP_832410.1| hypothetical protein Arth_2931 [Arthrobacter sp. FB24] gi|116611586|gb|ABK04310.1| hypothetical protein Arth_2931 [Arthrobacter sp. FB24] Length = 259 Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 70/192 (36%), Gaps = 17/192 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +RL+ VV+ + A+V ++ + + + VL+ + G Sbjct: 1 MK-SRLLAGVVAVLLAIVGAVLVVTYAQGADQRAV-----KDLDPVGVLVVTKAIPAGAT 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-- 118 V + E V + + + E G + ++ G+ + EKLV + Sbjct: 55 V---DTVKASVALEQVPGTAVAKSA-LDTLDESAGKVAAANLVPGEQLLAEKLVAPEDLQ 110 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSN 173 S +P G + + + VGG ++P DHV + + K T + + Sbjct: 111 TSGSMKVPAGLQEVSFQLEPQRVVGGRLQPGDHVGIFITMRSGGIEPKPEKETTQLSIHK 170 Query: 174 IRVIAIDHNIDS 185 + V A+ + Sbjct: 171 VLVTAVQRAPEG 182 >gi|325964122|ref|YP_004242028.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470209|gb|ADX73894.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans Sphe3] Length = 247 Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 74/237 (31%), Gaps = 35/237 (14%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT--PN 64 M + A+V ++ + + + ++VL+ K + G V Sbjct: 1 MAGTAAVALAIVGALLIIFYAQGADQRAI-----ATTQPVDVLVVKTAIPAGTPVNDMAA 55 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN--GGLS 122 L P V D + +++ G + V ++ G+ + E+LV + + Sbjct: 56 SLALERMPAAGVSDTAL------SSLDNKAGTVSAVDLVAGEQLLAERLVAPADVKAQGA 109 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----VRSLSERKPTVTVVLSNIRVI 177 +P G + + ++ VGG I DHV + + T + L + V Sbjct: 110 VEVPAGLQEVSFEVEPKRVVGGRINVGDHVGIALNFENGAYKAKADDATTQLTLRKVIVT 169 Query: 178 AIDHNIDSDERVLVGS---------------TATLELTPMQAKALVAAQSVAKLSLV 219 A+ T+ +T + A ++ L L Sbjct: 170 AVQRAPQPASTEKPAEGEANSQDTTLPQGSLMITVAVTDVDAAKIIFTSINGTLWLT 226 >gi|226307879|ref|YP_002767839.1| hypothetical protein RER_43920 [Rhodococcus erythropolis PR4] gi|226186996|dbj|BAH35100.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 248 Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 22/194 (11%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + V++S DL G V+ + +E + + +G + D + G V Sbjct: 64 PATDTVAVVVSSRDLTPGQVIADSDVEIREIDSKQLPEGVVSDTDL------VVGRTVAG 117 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 PI G+ + +++ GLS R + ++ + AV M++ D VDV+ V Sbjct: 118 PIRSGETVTDVRVLSPRLAGLSVG-TDDARIVPVRLADA-AVADMLRSGDVVDVLTVGPD 175 Query: 161 SERKPTVTV-------------VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL 207 + R T +L+ V+A+ R L L A + Sbjct: 176 TSRTDTSRPDTPNESIADQAPQILAAGAVVAL-VTTSESTRNQQEQVILLALPTPAANVV 234 Query: 208 VAAQSVAKLSLVLR 221 AA +++ R Sbjct: 235 AAASLSNAITVTFR 248 >gi|238782882|ref|ZP_04626911.1| tight adherance operon protein [Yersinia bercovieri ATCC 43970] gi|238716305|gb|EEQ08288.1| tight adherance operon protein [Yersinia bercovieri ATCC 43970] Length = 279 Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 96/284 (33%), Gaps = 38/284 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + + AG++ R + + + I + S DL+ G + Sbjct: 1 MNRKLILLFSLIIIAIGAAGVLGNREDGSNTLTNLVEPKKEKIATIMLAQSTRDLSSGTI 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + V + + + + L++ IL G I E LV + Sbjct: 61 LTKDDYALKTV---MVPESSQLIKSDLSNPENIKSHLLKTNILSGSYITNEMLVSPESSE 117 Query: 121 LSSL-LPKGKRAATMDIS-ISSAVGGMIKPNDHVDV------------------VMVRSL 160 L L KG+ DI + ++ D + + + + + Sbjct: 118 FDRLSLKKGEVIYKFDIEQQEQHLLDVLNLGDTLSLQLRTLETDLRKGVENGIAINTQEM 177 Query: 161 SERKPTVTV---VLSNIRVIAI----DHNIDSDERVLVGSTATL----EL--TPMQAKAL 207 ++RK + V+ N+RVI I + + + + + +L E+ + + Sbjct: 178 NDRKKQNYLLTEVIPNMRVIRIKKYSANELSEENKKNQKTKISLVGYIEVIINTEELNII 237 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 A+ + L+ +L + D+ + + I+ ++ Sbjct: 238 HLAEKSGDIFLI--PGTELRDEHHTSKSLHDIFPKLRTIRELRG 279 >gi|15895245|ref|NP_348594.1| hypothetical protein CA_C1974 [Clostridium acetobutylicum ATCC 824] gi|15024955|gb|AAK79934.1|AE007702_1 Hypothetical secreted protein [Clostridium acetobutylicum ATCC 824] gi|325509391|gb|ADZ21027.1| Hypothetical secreted protein [Clostridium acetobutylicum EA 2018] Length = 217 Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 86/214 (40%), Gaps = 23/214 (10%) Query: 1 MK-LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M + I++S V A + + E N + +V+I+ D+ G Sbjct: 1 MNFRKSNIKILISTVLMSCAAFGCLIM--------AENKIINSSGKKDVIIASKDIKQGT 52 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + + L+ V + E V + + M+ + I KG+ I ++++D+ + Sbjct: 53 AIDKSSLKKVEYYRECVNSDSVTN------MEYMGNKYASENIYKGEVISKKRVLDKNDD 106 Query: 120 GLSSLLPKGKRAATMDIS--ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 L L + ++ ++ +S + G ++ D VD+V ++E+ V ++VI Sbjct: 107 -LKPFLKENEKEISIPLSKFNNDTFIGTLREGDIVDIVHTSVVNEKAED-EVEAKGLKVI 164 Query: 178 -AIDHN---IDSDERVLVGSTATLELTPMQAKAL 207 A+D + ++ ++ ++ + + + Sbjct: 165 GAVDSQGRFLKEQDKNILAASLVFLGSEEEFIKI 198 >gi|84498177|ref|ZP_00996974.1| hypothetical protein JNB_18858 [Janibacter sp. HTCC2649] gi|84381677|gb|EAP97560.1| hypothetical protein JNB_18858 [Janibacter sp. HTCC2649] Length = 263 Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 69/265 (26%), Gaps = 53/265 (20%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN----ILEWVA 70 AL ++ + + E V +S+ + G + ++ Sbjct: 2 LALAGAVLVLLYAQGADKRALEGQQPQ-----TVYVSEKVVPAGTTLKDAERSGLITRTQ 56 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 + G + + N+ + R + G + G + + G Sbjct: 57 VASKAKPAGALAGITSDNSS-----FVARADLPPGQVVLSAAFGSERLGQKAIGVKSGMV 111 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRS-------------LSERKPTVTVVLSNIRVI 177 A ++ + + VG + + + +V+L+ + VI Sbjct: 112 AVSVSLEDPNRVGAFVTAGSTITIYDTYELKKLGTDEATAQYNDLSVKGTSVLLTKVSVI 171 Query: 178 AIDHNI---------DSDERVLVGST--------ATLELTPMQAKALVAAQSVAK----- 215 I ++ +T T+ELTP + LV A Sbjct: 172 GIGTTSLSAPVATEQAEKDKGAAPTTSTPVQSYLVTVELTPADSVKLVHAIQHGANPQNN 231 Query: 216 ----LSLVLRSIADLNPSSSEDSDV 236 + L P + D Sbjct: 232 PAKHIYFALEGPDTTVPPNLSTDDF 256 >gi|269957599|ref|YP_003327388.1| SAF domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269306280|gb|ACZ31830.1| SAF domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 227 Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 23/210 (10%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++ T +V+ P +V++ L G+ + L V+ P DG Sbjct: 31 LLVALCCGIAASSTVQVLRPAPPPMRSVVVPTHRLEPGVELRAGDLTVVSVPAALAPDGA 90 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 + D + G + V + G P+ + G +++L P G + + ++ Sbjct: 91 LTDTA------DAVGRVPAVALEAGLPLSASLVA---GGEVAALAPTGTVVVPVRLDDAT 141 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV--------G 192 A +++ D VD+V SL P + + V+ Sbjct: 142 AA--LLRAGDRVDLVSTASLD---PEAAYLARRVLVLTPGSRAAEGGGASGLLGGAVSDA 196 Query: 193 STATL-ELTPMQAKALVAAQSVAKLSLVLR 221 TL ++P +A L AA ++ VL Sbjct: 197 PVVTLVAVSPAEAPGLSAASGAGTVAAVLV 226 >gi|52425835|ref|YP_088972.1| hypothetical protein MS1780 [Mannheimia succiniciproducens MBEL55E] gi|52307887|gb|AAU38387.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 258 Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 61/181 (33%), Gaps = 10/181 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF--INVLIS--KGDLA 56 M L I + ++G+ M + ++ +E A I++LI+ + Sbjct: 1 MNYRVLFFISFLILAMGLSGLFFMLPEESPNTPQQQTTSEKTAPKSQISILIAQTTRQIP 60 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE---LDGVLVRVPILKGDPIRLEKL 113 G ++ ++ D+ A E L G L + + G + + L Sbjct: 61 QGTLLQAEDYALSELTVDSDDARANFDLKAWLANNENSSLQGYLAKQTLQVGSFLSPDLL 120 Query: 114 VDRGNGG--LSSLLPKGKRAATMDISISSA-VGGMIKPNDHVDVVMVRSLSERKPTVTVV 170 + + LSSL P + A + I + + ++ HV V + + Sbjct: 121 LSPQHPDYLLSSLDPMQEVAYRIYIKAENGYIFDTLRAGSHVSVGSQQIAGGKNNKERTE 180 Query: 171 L 171 L Sbjct: 181 L 181 >gi|116671469|ref|YP_832402.1| hypothetical protein Arth_2923 [Arthrobacter sp. FB24] gi|116611578|gb|ABK04302.1| hypothetical protein Arth_2923 [Arthrobacter sp. FB24] Length = 256 Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 31/247 (12%), Positives = 75/247 (30%), Gaps = 40/247 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK L G+ + + + ++ Q + + + + VL+ + + G Sbjct: 1 MKSRLLGGLAALLLAIVGSVLMFNY------AQAADSRAQQGLEPVEVLVVQKAVTAGTP 54 Query: 61 VTP--NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 V+ ++ + P V + ++ + + V + G+ + +LVD Sbjct: 55 VSKLSESVKLTSIPGTAVPADAVK------SLSDFSDKVTAVDLQPGEQLLKARLVDPNA 108 Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV------ 170 + +P G ++ + +GG + D V V + + ++ V Sbjct: 109 LAAPGTVPVPAGMEEISVLLEPQRVIGGRLAAGDTVGVYISYKMDDKAGADAPVSNDIKG 168 Query: 171 --------LSNIRVIAIDHNIDSDER----------VLVGSTATLELTPMQAKALVAAQS 212 + V ++ + TL + A +V Sbjct: 169 FKEFTGKAFHKVLVTSVQQAPPETTKDASSADGPALPSGSVYVTLAREDVDAAEIVFGAE 228 Query: 213 VAKLSLV 219 K+ L Sbjct: 229 FGKIWLS 235 >gi|196048041|ref|ZP_03115219.1| hypothetical secreted protein [Bacillus cereus 03BB108] gi|196021297|gb|EDX60026.1| hypothetical secreted protein [Bacillus cereus 03BB108] Length = 276 Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 74/219 (33%), Gaps = 46/219 (21%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 TE+ K + +++K D+A +T +++ FP + +++ G Sbjct: 2 QTESKVKPVKAIVTKQDIAPHTKITEDMILEKEFPMSGIPP------KSALKKEDVVGKW 55 Query: 98 VR--VPILKGDPIRLEKLVDRGNGGLSSLLP--KGKRAATMDISISSAVGGMIKPNDHVD 153 + I K + + K+ + + ++ G+ A + + + ++ G I PN +VD Sbjct: 56 TKDGYGIAKNSYMNVSKIAKQEELPDAGVISLKPGEYAFPVLVDLETSNGNAIVPNTYVD 115 Query: 154 VVMVRSLS-------------ERKPTVTVV------LSNIRVIAIDHNIDSD-------- 186 + +L ++K V RV+++ + SD Sbjct: 116 LYFATNLEAEKLGKVVGIADLDKKFISESVKFFGLAAKKARVVSVKDSTTSDVFNAVPNT 175 Query: 187 ---------ERVLVGSTATLELTPMQAKALVAAQSVAKL 216 T+ + + L A+ K+ Sbjct: 176 QAADGKQPSNTRKQARLYTIAVDKDALQVLNKAKLNGKI 214 >gi|311740868|ref|ZP_07714695.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311304388|gb|EFQ80464.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 230 Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 61/187 (32%), Gaps = 13/187 (6%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + V + DL G + ++ P ++ D + +EL G ++ Sbjct: 41 ELPRVPVFSRDLPAGAELALADVDLARLPSSSIPDSAV-----AAKPEELTGRVITAAAG 95 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS-ISSAVGGMIKPNDHVDVV----MVR 158 KG+ I +L+ + A + + + + D VDVV Sbjct: 96 KGEVITDARLLGEELVSSLVGGSEDAAARMIPVKLAEPDIIPHLHHGDTVDVVTAVDAAS 155 Query: 159 SLSERKPTVTVVLSNIRVIAID---HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK 215 S S+ RVIA + + E ST L L A + AA Sbjct: 156 SPSDVGEGEAPTAPTARVIATGGRVVSTSNAEGEASSSTVLLALPHDHANDVAAASLSQP 215 Query: 216 LSLVLRS 222 L++V+ Sbjct: 216 LTVVIVG 222 >gi|296130407|ref|YP_003637657.1| Flp pilus assembly protein CpaB [Cellulomonas flavigena DSM 20109] gi|296022222|gb|ADG75458.1| Flp pilus assembly protein CpaB [Cellulomonas flavigena DSM 20109] Length = 241 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 65/209 (31%), Gaps = 18/209 (8%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 GV ++ ++ +V + V D + L P Sbjct: 8 GVLFVLLSVVFAVVVFFVIASYVGNVASQVGSLRTVYRLADDTPAFAELQEGDLVADEVP 67 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132 + + EL G V +L G + + LV + L +R Sbjct: 68 ARWLSPSA------EVTLDELVGRKVATNLLAGTMVTSDLLVPPSD------LSTTEREI 115 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRVIAIDHNIDSDERVL 190 + ++ + V ++P D VD+ V + K +V V + DE Sbjct: 116 AISVNQVTGVADRVRPGDRVDIYAVFADVPGLAKQVRVLVRDVRVVSVRGSQVVLDESAA 175 Query: 191 VGS----TATLELTPMQAKALVAAQSVAK 215 G+ TL L P A A+ A + A+ Sbjct: 176 SGTQSVVPVTLALEPDDALAVTYAAAFAQ 204 >gi|297563018|ref|YP_003681992.1| SAF domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847466|gb|ADH69486.1| SAF domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 218 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 16/188 (8%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 P VL++ DL +T L P +V G + ++ + Sbjct: 43 RPAPVPVTRVLVASRDLGAADPLTEGDLTARDLPAGSVPGGALAADTAAAGLR------L 96 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 P+ +G+ I +L D + G A + ++ AV G++ P VDV+ Sbjct: 97 NAPVRRGEVITDARLADPP----ARAYGPGLVAVPVRVADPGAV-GLLSPGSRVDVLAAG 151 Query: 159 SLSE----RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 + R V+S+ V+A+ S + TP++A++L + + Sbjct: 152 GSDDLAPARAGPAVEVVSDRPVLALPEEESSGGGEGGA-LIVVAATPVEARSLAGHAAAS 210 Query: 215 KLSLVLRS 222 +LS+ +R Sbjct: 211 RLSITIRG 218 >gi|317491682|ref|ZP_07950117.1| SAF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920116|gb|EFV41440.1| SAF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 269 Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 84/275 (30%), Gaps = 34/275 (12%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 L + + + +AGI + + V+ + + I V + +L ++ + Sbjct: 2 LFFLSIIVIAVGIAGIFVQKKTPENEVKQDAITA---VNTITVAKAVRELKPYDILKRDD 58 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS-L 124 + E D +L G LVR I G I + + ++ Sbjct: 59 YTLTSI--EVAQDIKDRRDISSLDNGDLQGYLVRHNISNGSFILPHMVESPSSSTFAAHS 116 Query: 125 LPKGKRAATMDISISSA-VGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNI----- 174 L + + + + + D V + + V + + SNI Sbjct: 117 LRSNETPYSYKVKPEDDYLLSSLSIGDEVSLYLRLIEVDKSKKNSVGLVTEGSNIPDANM 176 Query: 175 ------RVIA----IDHNIDSDERVLVGS------TATLELTPMQAKALVAAQSVAKLSL 218 RV+ +D E+ S T L L Q L + +L L Sbjct: 177 KRYAISRVMGPLSIVDIKKIPKEKTKSYSNEDFVGTIVLRLDSQQLAELKVVEKAGELLL 236 Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253 + S++ + +V + ++ ++ G Sbjct: 237 F--PFDEYEDESNQKIRMDEVLPQFNSVKELRGGE 269 >gi|295396211|ref|ZP_06806393.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] gi|294970999|gb|EFG46892.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] Length = 173 Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 59/162 (36%), Gaps = 18/162 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 ++++ + G V+T ++ FP + + + + D ++ G + G Sbjct: 11 RIVVAHTRIDPGTVITARLVTTRVFPPQLIPENAVTDPA------QVVGTTSASSLDAGT 64 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 P+ L++ +P G + +S + +++P + V S Sbjct: 65 PVTTTALLESAPA----NIPPGHVRVPISVSDPATTS-VLRPGHRIQVYSSTSEEANS-- 117 Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208 ++ + V+++ +D+ S T+ ++ A L Sbjct: 118 ---LVDDALVVSV--TTANDQFTGQTSVVTIAVSQEDAPKLA 154 >gi|54026930|ref|YP_121172.1| hypothetical protein nfa49560 [Nocardia farcinica IFM 10152] gi|54018438|dbj|BAD59808.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 221 Score = 66.3 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 67/180 (37%), Gaps = 12/180 (6%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 A I V+++ +L G V+ L ++ G + D L G + Sbjct: 51 PGAARIPVVVAARELPPGTVLAAADLTVAPHEAGSLPAGAVRDPAV------LTGATLTA 104 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 + G+ ++V +++ R + ++ +AV +++ D VDV+ + Sbjct: 105 AMHPGEVFTDLRVVGPRLAEVAAS-TPDARIVPIRLAD-TAVAEILRAGDRVDVIGGETD 162 Query: 161 SERKPT-VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + V + ++ V+ + + ER + + A A+ AA L++V Sbjct: 163 DDSGTRPVRTLAADAAVVLV---SEPTERGRAERVVLVAMDAEHAVAVAAASLHTALTVV 219 >gi|145222484|ref|YP_001133162.1| SAF domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315442930|ref|YP_004075809.1| flagellar basal body P-ring biosynthesis protein [Mycobacterium sp. Spyr1] gi|145214970|gb|ABP44374.1| SAF domain [Mycobacterium gilvum PYR-GCK] gi|315261233|gb|ADT97974.1| flagellar basal body P-ring biosynthesis protein [Mycobacterium sp. Spyr1] Length = 217 Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 71/180 (39%), Gaps = 11/180 (6%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 A V+++ DLA G+ +T + + + DG + DV E+ + Sbjct: 48 PDADRSEVVVTVRDLAPGVALTAADVRVESRAAPLLPDGALTDVD------EVVDATLAG 101 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 P +G+ + +L+ ++ R + ++ ++ V +++P D VD+ V + Sbjct: 102 PARQGEVLTDVRLLGPRLARSAA--GPDARIVPIPLADAALV-DLVRPGDVVDI--VAAP 156 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ++ V ++ V+ + + G + L A+ + A V ++L L Sbjct: 157 ADDAVAARTVATDAIVVLVSAAENGIGARAGGRVVLVALPAAGAERVAGAALVEAITLTL 216 >gi|163846106|ref|YP_001634150.1| SAF domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222523842|ref|YP_002568312.1| SAF domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163667395|gb|ABY33761.1| SAF domain protein [Chloroflexus aurantiacus J-10-fl] gi|222447721|gb|ACM51987.1| SAF domain protein [Chloroflexus sp. Y-400-fl] Length = 350 Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 48/325 (14%), Positives = 102/325 (31%), Gaps = 88/325 (27%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRL-----VSPHHVQTEEVITENPAKFINVLISKGDL 55 M+ L+ +++ + + + L S E ++V+ ++ DL Sbjct: 1 MRRGALLFLLIGLIVIIGGLAAFLLLRGGAATSTTSQTPEVPPPPTAVPLVSVVQARVDL 60 Query: 56 AVGMVV-TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 ++ P++L+ V P D+ ++ + + ++ G L+ P++ G IR + + Sbjct: 61 EANTLLNDPSLLDVVEVPVTE-----FDEANEFSNINDVLGKLLINPVVAGQSIRKDNIR 115 Query: 115 DRGNGGLSSLLPKGK---RAATMDISISSAVGGMIKPNDHVDVVMV-------------- 157 + G G+ +A + ++ S V + ND VDV+ Sbjct: 116 EAGLAQRIPTAEPGQAQVKAYPLIVNSLSGVADQVAVNDFVDVIATFSVERQIIRPGPVQ 175 Query: 158 ---------------RSLSERKPTVTVVLSNIRVI------------------------- 177 ++ + ++ +V+ Sbjct: 176 VITVNDVDQLVREYQYGENQTFFSTKTIIQRAQVLQIVRPALPAPTEGEETTTEAVTPPA 235 Query: 178 --------AIDHNIDSDERVLVGST-----------ATLELTPMQAKALVAA-QSVAKLS 217 A I + G+T L LT + + L A QS A++ Sbjct: 236 SSSLPQVDASGQPITGAQTAEGGATTPSTLTEGVWVVVLALTDQEIELLEFALQSQARIV 295 Query: 218 LVLRSIADLNPSSSEDSDVWDVQEE 242 L LR D S+ + + E Sbjct: 296 LALRGANDDAIESTSGVTLDLLVRE 320 >gi|75992380|dbj|BAE45046.1| hypothetical protein [Terrabacter sp. DBF63] Length = 239 Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 37/228 (16%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K R I + ++ G++ T A+ VL++ D+ G V Sbjct: 35 KRRRPALIGLGVALVVLCGLLGWWF------------TARGAQTHTVLVAASDIEAGKPV 82 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + G + +Q G+L I +G + V++ Sbjct: 83 -----KVQQLSTTEIAGGGGIETMPAEQLQNTAGLLATSNIPEGTVLSPAMFVNKVT--- 134 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLS--------- 172 G + + S ++P D V VV+ S T + Sbjct: 135 ---PDGGMSIVGVSVKPSQMPALGLRPGDTVSVVIAHSPQASGQTGQPGETAALTTGKTW 191 Query: 173 NIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 V ++ D T + L A+ L+AA +L++ L Sbjct: 192 RATVASVGEPGDDG-----ARTIDVTLNSDSARELMAAGGSGRLAIAL 234 >gi|148974886|ref|ZP_01811866.1| hypothetical protein VSWAT3_25214 [Vibrionales bacterium SWAT-3] gi|145965395|gb|EDK30644.1| hypothetical protein VSWAT3_25214 [Vibrionales bacterium SWAT-3] Length = 216 Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 22/219 (10%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 +L+++ ++ +TPN E ++ + G L + I +G Sbjct: 3 ILVAQQEIKRSQPLTPNFYEKKFVHISDLDGYYYTLEKDIVVQP---GALFKEDIKEGTY 59 Query: 108 IRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVG-GMIKPNDHVDVVMV-------- 157 + E + + G+ + L G+ +++ V + P D V V Sbjct: 60 LTQEMISNPGDRDYMYLSLNDGELPYFYEVTGIGVVQTSTLTPGDKVSFVSTTSSKSNLV 119 Query: 158 --RSLSERKPTVTVVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212 V++S RV+ + + DS + + + L L AQ Sbjct: 120 ESGYGDIGDLVSRVIISGARVLQVIKGSEDTDSQDAEDKKYSLVIALNMRSVLKLEMAQK 179 Query: 213 VAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 + ++++ +++ D+ E ++ ++ Sbjct: 180 IGDVNII---PSEIENRYLSIRS-SDLLETQFGVRELRG 214 >gi|126437236|ref|YP_001072927.1| SAF domain-containing protein [Mycobacterium sp. JLS] gi|126237036|gb|ABO00437.1| SAF domain [Mycobacterium sp. JLS] Length = 218 Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 64/182 (35%), Gaps = 9/182 (4%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 ++ ++V+++ DL GM + + + P V DG D + G+ Sbjct: 44 RSDPDGDQVDVVVAATDLTPGMDLAESDVRVERRPLTTVPDGAAKDP------TAVIGMT 97 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 V P +G+ + +L+ ++ R ++ ++ A+ +++ D VDV+ Sbjct: 98 VAGPTRRGEVLTDLRLLGPRIAEAAA--GPDARIVSLQLAD-GALVDLVRTGDVVDVLAA 154 Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 + V++ V+ + + L A + A ++ Sbjct: 155 PTSDTGADARPRVIATRAVVVLVSEKRQGPGAAGERAVLVALPAQAANEVAGASLTQAVT 214 Query: 218 LV 219 L Sbjct: 215 LT 216 >gi|169628178|ref|YP_001701827.1| hypothetical protein MAB_1083c [Mycobacterium abscessus ATCC 19977] gi|169240145|emb|CAM61173.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 224 Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 80/216 (37%), Gaps = 26/216 (12%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 + + + L A ++A R + V+++ DL+ G +++ + + Sbjct: 31 IAAAILVLFAALLAFR-------------PDPADDRAEVVVAARDLSPGTILSSDDVRLE 77 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 + DG + G + P+ +G+ + +++ ++ K Sbjct: 78 KRSTTILPDGVRTESATLF------GATLAGPVRRGEMLTDVRVLGPRLAESAA--GKDA 129 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----PTVTVVLSNIRVIAIDHNIDS 185 R + ++ ++ V MI+ D VD++ V P VL++ V+ + + Sbjct: 130 RIVPVPLADAATV-DMIRTGDVVDILTVAGHEPGAARDTPAEPTVLASGAVVVLVSPKPA 188 Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + V + L P QA + A V ++L R Sbjct: 189 AKGVGTERVVMVALPPQQANRVAAIALVQAVTLTFR 224 >gi|320533999|ref|ZP_08034557.1| SAF domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133787|gb|EFW26177.1| SAF domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 235 Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 71/177 (40%), Gaps = 19/177 (10%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + +L +K + G V+ L + + + + + + + ++ G RV I Sbjct: 68 QRAQMLAAKDTIKAGQVIDKEDLVSASVSSD------LTTLVRADQIDQVVGRTARVEIS 121 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 KG + +L G + + + G ++P D VDVV + S + Sbjct: 122 KGQLLDTSQLATDPVPG------GDLQVVGVSANAGRFPAGGLQPGDKVDVVDIGSQN-- 173 Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 V++S+ +V+A + + + G+ ++ + A L +A + ++++L Sbjct: 174 -----VIVSDAQVLAAKPSSGTSDDWTSGAVISVLVDKKGAAKLASASANGTIAVIL 225 >gi|23466106|ref|NP_696709.1| hypothetical protein BL1553 [Bifidobacterium longum NCC2705] gi|23326839|gb|AAN25345.1| hypothetical protein BL1553 [Bifidobacterium longum NCC2705] Length = 220 Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 66/220 (30%), Gaps = 27/220 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R+ + AL G+ + + + ++++ + G ++ Sbjct: 28 RRRRMADALRRLTAALCVGLAVLFGLE---------AVLAVVETEPMVVAARSIRRGDII 78 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 ++ P + ++++ G + ++ I DPI Sbjct: 79 LAADVQLADMPVSAI------GPSWACNIEDVVGKVAQIDIEAADPIS------THMARD 126 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 + + P G + ++ S + D V +V + N V+ +D Sbjct: 127 APVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGCEGADC---TLAENATVMNVDK 180 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + + + P A ++ Q + V+R Sbjct: 181 PDTTGALGSNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 220 >gi|108801257|ref|YP_641454.1| hypothetical protein Mmcs_4293 [Mycobacterium sp. MCS] gi|119870408|ref|YP_940360.1| SAF domain-containing protein [Mycobacterium sp. KMS] gi|108771676|gb|ABG10398.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119696497|gb|ABL93570.1| SAF domain [Mycobacterium sp. KMS] Length = 218 Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 65/188 (34%), Gaps = 9/188 (4%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 V ++ ++V+++ DL G + + + P V DG D Sbjct: 38 AAVAAVRSDPDGDQVDVVVAATDLTPGTELAESDVRVERRPLTTVPDGAAVDP------T 91 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 + G V P +G+ + +L+ ++ R ++ ++ A+ +++ D Sbjct: 92 AVIGATVAGPTRRGEVLTDVRLLGPRIAEAAA--GPDARIVSLQLAD-GALVDLVRTGDV 148 Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 VDV+ + + + V++ V+ + + L A + A Sbjct: 149 VDVLAAPASNTGEEARPRVIATRAVVVLVSEKRQGPGAAGERAVLVALPAQAANDVAGAS 208 Query: 212 SVAKLSLV 219 ++L Sbjct: 209 LTQAVTLT 216 >gi|134298817|ref|YP_001112313.1| hypothetical protein Dred_0953 [Desulfotomaculum reducens MI-1] gi|134051517|gb|ABO49488.1| hypothetical protein Dred_0953 [Desulfotomaculum reducens MI-1] Length = 232 Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 74/218 (33%), Gaps = 15/218 (6%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++ + V+ + + N + I++ + + G V+TP + F + Sbjct: 19 MLIVIAVTIPATKYQREWVANNQETISLPVPAHVIYAGHVITPGDITIRKFLKAAQEPTS 78 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI-S 139 I D E+ G + + + IR +KLV N +L G+ ++ Sbjct: 79 IQD------TTEITGRVAASDLYPMEQIRADKLVPPEN-----ILNTGEAYVSIKADSLE 127 Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKPTV--TVVLSNIRVIAIDHNIDSDERVLVGSTATL 197 +GG I+PN VDV V L + + ++S I V A + V L Sbjct: 128 QILGGQIQPNMQVDVYHVVDLENAPVLLAKSAIVSGI-VGASGSVTPTQNDPPVPKWVLL 186 Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 ++ + K+ L N S Sbjct: 187 KVKETECANFTRPVMGGKVFLSQTGYMSTNVSQPTTQT 224 >gi|229819398|ref|YP_002880924.1| SAF domain protein [Beutenbergia cavernae DSM 12333] gi|229565311|gb|ACQ79162.1| SAF domain protein [Beutenbergia cavernae DSM 12333] Length = 207 Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 65/187 (34%), Gaps = 13/187 (6%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 ++VL++ D+A + P + VA P + V + +A ++ G + Sbjct: 29 RPPDPPSVDVLVAAHDIAAAQEIVPADVRVVALPADAVPPDAL------DAADDVVGRQL 82 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 + G P+ ++ GL+ P+G + + +++P VD+V Sbjct: 83 AHALPAGYPLGPGMVLGP---GLADGAPRGTTVVPVRFADPLLTS-VLEPGATVDLVAAG 138 Query: 159 SLSERKPTVTV---VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK 215 + VL+ + A + + P A +V A + Sbjct: 139 DQEAGAHVLATDAVVLARVDGEAGGGIGGLTSSAPDAPLLLVAVRPDVATLVVEASARGT 198 Query: 216 LSLVLRS 222 L++VL Sbjct: 199 LTVVLVP 205 >gi|229818382|ref|ZP_04448663.1| hypothetical protein BIFANG_03684 [Bifidobacterium angulatum DSM 20098] gi|229784252|gb|EEP20366.1| hypothetical protein BIFANG_03684 [Bifidobacterium angulatum DSM 20098] Length = 221 Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 24/184 (13%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 ++ + +A G + + + + P V + + G + + PI Sbjct: 55 TDTIVTAATPIARGTTIRHDDVVMMTVPASPVTGKALHTTDK------AVGSIAQHPIEA 108 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-------V 157 G P+ + G + + G + ++ S + P D V +V Sbjct: 109 GQPLYAGSV------GKAPTITTGDTVLDIAVANSI---NALIPGDTVSLVSAVGCEPTS 159 Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 + + +P + S ++ + D + T+ L P A ++ A + Sbjct: 160 QEHNNEQPAACTLASQAMIM--ETKARQDGNSTERNLLTVALDPQSAIRVMKAGESGAII 217 Query: 218 LVLR 221 V R Sbjct: 218 AVHR 221 >gi|134298813|ref|YP_001112309.1| SAF domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051513|gb|ABO49484.1| SAF domain protein [Desulfotomaculum reducens MI-1] Length = 215 Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 70/233 (30%), Gaps = 40/233 (17%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + + I + +I + K + V + G Sbjct: 1 MDRKKGIIISLILSLVFTGAVIF----------SSNTKYAAATKTVEVAAVNQYIPAGKK 50 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + ++ PE+ ++ ++ G + V ++K I + + Sbjct: 51 ITKDDIKMDRVPEKMA-------INLVQKADDVVGKTILVSLVKDQYIWKKAIAQGEAK- 102 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +G + + S+ + + VD+ +V + ++ RV+ Sbjct: 103 -----KEGYIQVFIPTDLPSSA--CVIAGEVVDIYLVSKG-GIESNSGLIYKGARVLNSL 154 Query: 181 HNIDSD--------------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 ++ V T +E+ + A +V A S ++ LV Sbjct: 155 DQSGNEIDPARKNEVSQMAVNGSKVPVTVGVEVPEIVAPVIVQACSKKEIYLV 207 >gi|317133361|ref|YP_004092675.1| hypothetical protein Ethha_2449 [Ethanoligenens harbinense YUAN-3] gi|315471340|gb|ADU27944.1| hypothetical protein Ethha_2449 [Ethanoligenens harbinense YUAN-3] Length = 287 Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 85/269 (31%), Gaps = 51/269 (18%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 RL+ ++S A+V G + LV+ + + V+ +K + G +TP Sbjct: 37 KRLVASILSIGLAVVVGFGGVFLVNRLTMA-----------TVPVVRAKEIIPQGTQITP 85 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 N++E + N+ + G I+ D I +KL Sbjct: 86 NMIEVDQVSKYNLQSNV------TGNTSLVVGAYATTEIMPQDNITGDKLSKSNP---VY 136 Query: 124 LLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVM-----------VRSLSERKPTVTVVL 171 L G+ ++ + ++S A+ G +K D V V + + T L Sbjct: 137 TLDTGEMLVSVPVKNLSDALAGQLKAGDIVRVSALVASGSTAGSNNAGGTANQTTTPAEL 196 Query: 172 SNIRVIAIDHNIDSDERVLVG------------------STATLELTPMQAKALVAAQSV 213 ++V A+ + V ++ TL + Q L Sbjct: 197 QYVKVAAVAASNGQSAAVSQAQAKTAIGTTTSSNTSNLPASVTLYVNEQQLSRLTQMSQS 256 Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 +L+ L + + + + E Sbjct: 257 -ELTFALVYRGGGTEAKTLLQEQTQLLEG 284 >gi|302335340|ref|YP_003800547.1| SAF domain protein [Olsenella uli DSM 7084] gi|301319180|gb|ADK67667.1| SAF domain protein [Olsenella uli DSM 7084] Length = 229 Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 70/197 (35%), Gaps = 17/197 (8%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 A + + +E I + + +++S+G L G VV + + + + Sbjct: 25 AESVRAEAERTRDEAIARYGGEVVRLVVSRGPLEPGDVVDQADVSERDWVTDLAPSDALT 84 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV 142 ++ ++ G V VP+ P+ + + +P G A ++ I+ V Sbjct: 85 ------SLDDVVGREVTVPVAANAPVTALAF---RDVAAMADIPAGHVALSIPITDKLGV 135 Query: 143 GGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPM 202 I V +V T + ++ V+A + + G TL + Sbjct: 136 SRSIGVGTSVIGYVVDDKG-----STPIATDATVLA---SPGETSGLGTGGQLTLAIRSE 187 Query: 203 QAKALVAAQSVAKLSLV 219 A+++A + L +V Sbjct: 188 DVDAVLSASAAGTLRIV 204 >gi|296393686|ref|YP_003658570.1| SAF domain-containing protein [Segniliparus rotundus DSM 44985] gi|296180833|gb|ADG97739.1| SAF domain protein [Segniliparus rotundus DSM 44985] Length = 227 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 21/216 (9%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76 LVA + + +++ DL G+ + P L + +V Sbjct: 22 LVAARRVAAGLLLLLAGGLAIRAHARPGQAAAVVAAHDLRPGVALGPADLAVRSLSPGDV 81 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136 G + D +L G V P+ G+ + +++ GL++ + RA ++ + Sbjct: 82 PAGAVADPR------QLLGRTVAGPVRSGEALTDVRIITPRLAGLATAI-PDARAVSVRL 134 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTV-----------TVVLSNIRVIAIDHNIDS 185 + M++P D VDVV V V+ V+ + + Sbjct: 135 PD-QTLADMLRPGDVVDVVTVPQHQPGATEDAATKQTGIRPPEVLAQAAVVLLV--SEPE 191 Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 G A L + A+ + A + ++++ R Sbjct: 192 RSSAAQGRVALLAMDNTAAQKVAAVTLIQAVTVISR 227 >gi|307245413|ref|ZP_07527501.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254368|ref|ZP_07536206.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258826|ref|ZP_07540558.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853754|gb|EFM85971.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862667|gb|EFM94623.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867177|gb|EFM99033.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 268 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 60/199 (30%), Gaps = 18/199 (9%) Query: 6 LMGIVVSGVFALVAGIIAM--------RLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 L+ I + + G+ + V E + K I + DL Sbjct: 2 LLIISLVIIVLGFGGLFMLPTNEGTTTENVGTTTTSEESSNSPVTEKVITTVTLNRDLEK 61 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIRLEKLV 114 G ++ P D+ + L G LV + G + ++ Sbjct: 62 GTLIQPEDYTLSELTVAETSPLVDSDLKALLDAEPNHSLQGFLVTENLKAGSLLTPNVII 121 Query: 115 DRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL----SERKPTV 167 + L SL P + A + + + ++ D V V V+ + ++ Sbjct: 122 TPEDPRFILLSLDPSQEVAYRIYVQDAEQYILDSVRGGDLVSVYSVQQDLAHPEREQNSL 181 Query: 168 TVVLSNIRVIAIDHNIDSD 186 + N++V+ + + Sbjct: 182 VKIADNLKVLQVKSFTQEE 200 >gi|226365103|ref|YP_002782886.1| hypothetical protein ROP_56940 [Rhodococcus opacus B4] gi|226243593|dbj|BAH53941.1| hypothetical protein [Rhodococcus opacus B4] Length = 227 Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 72/170 (42%), Gaps = 14/170 (8%) Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 DL G+V+T +E V ++ DG + A+ ++DG + P G+ + ++ Sbjct: 66 DLQPGVVLTKADVELVELEAGSLPDGAVT------AVADVDGRTLAGPTRAGETLTDVRV 119 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTV 169 + ++ + R + ++ AV +++ D VDV+ S +R+P TV Sbjct: 120 LGPRLAAAAAGM-DDARIVPVRLADP-AVTELLREGDRVDVLTVDPDTPSNPDRRPGATV 177 Query: 170 VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + S V+ + + + ++ L L A + AA + +++ Sbjct: 178 LASRAVVVLVTPSENGRDQRE--RVVMLALPASDATTVAAASLTSAITVT 225 >gi|309792344|ref|ZP_07686813.1| SAF domain-containing protein [Oscillochloris trichoides DG6] gi|308225610|gb|EFO79369.1| SAF domain-containing protein [Oscillochloris trichoides DG6] Length = 347 Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 89/289 (30%), Gaps = 81/289 (28%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 + T+ ++V+ ++ D+A V+ +E V + Q Sbjct: 33 LIGGSPATDVTSEPTAIPLVDVVHARFDIAANTVIKDTDVELVKIKQTEFNPD-----TQ 87 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK------RAATMDISISS 140 + + ++ G L I+ PI + L++ GLS +P + +A + ++ S Sbjct: 88 SSNLMDVVGKLTTSKIVAEQPINTKNLIEP---GLSQQIPTAEADRSTNKAYPLIVNNLS 144 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKP----------------------------TVTVVLS 172 V IKP D VDVV+ + R+ T ++ Sbjct: 145 GVSDQIKPGDFVDVVVTFQIPRRQSYPTGLTYEEVGGQMIPMIERELKDELFYTTKTIVQ 204 Query: 173 NIRVI-------------------------------------AIDHNIDSDERVLVGS-T 194 +V+ A D+ + G+ T Sbjct: 205 RAQVLKILRPQVALPEETPVAGSDAPVNSSSLPEVDASGQPIAPGTEADTTGSISQGAWT 264 Query: 195 ATLELTPMQAKALVAA-QSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 L + + + + A + +++ LVLR D + + E Sbjct: 265 LVLSVNDQEVELIEFALSTNSRIVLVLRGAGDTEFEETIGVTYDLLTSE 313 >gi|219883046|ref|YP_002478210.1| hypothetical protein Achl_4442 [Arthrobacter chlorophenolicus A6] gi|219862052|gb|ACL42393.1| conserved hypothetical protein [Arthrobacter chlorophenolicus A6] Length = 246 Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 30/237 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK TRL+G + + A+ + V + + +N+ + + Sbjct: 1 MK-TRLIGAAAALLLAITGTVAVTSYVQGADQRALKGAA-----TMNIYVVDKSVPANTP 54 Query: 61 VT--PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 ++ + P V G + D + L G + P+L G+ + ++VD + Sbjct: 55 AADLAKFVKPASVPASTVAAGAVTD------LGTLTGKVTSAPLLPGEQLLDGRMVDPAS 108 Query: 119 GGL--SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 + ++ +P+G + T+ + VGG + D V V + + T L+ +V Sbjct: 109 LLVPGTAPVPEGMQEITVQLGPDRVVGGQLAAGDTVGVFVSFTEGAGPKGPTTHLAFQKV 168 Query: 177 IAIDHNIDSDERVLVGST--------------ATLELTPMQAKALVAAQSVAKLSLV 219 + E + TL A+ +V A + L Sbjct: 169 LVTSVQGAPAEPTGKAAATAPPGPPVPAGAMLITLARPAADAERIVFAAEFGTIWLS 225 >gi|307263190|ref|ZP_07544811.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871552|gb|EFN03275.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 268 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 60/199 (30%), Gaps = 18/199 (9%) Query: 6 LMGIVVSGVFALVAGIIAM--------RLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 L+ I + + G+ + V E + K I + DL Sbjct: 2 LLIISLVIIVLGFGGLFMLPTNEGTTTENVGTTTTLEESSNSPVTEKVITTVTLNRDLEK 61 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIRLEKLV 114 G ++ P D+ + L G LV + G + ++ Sbjct: 62 GTLIQPEDYTLSELTVAETSPLVDSDLKALLDAEPNHSLQGFLVTENLKAGSLLTPNLII 121 Query: 115 DRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL----SERKPTV 167 + L SL P + A + + + ++ D V V V+ + ++ Sbjct: 122 TPEDPRFILLSLDPSQEVAYRIYVQDAEQYILDSVRGGDLVSVYSVQQDLAHPEREQNSL 181 Query: 168 TVVLSNIRVIAIDHNIDSD 186 + N++V+ + + Sbjct: 182 VKIADNLKVLQVKSFTQEE 200 >gi|293391333|ref|ZP_06635667.1| flp operon protein C [Aggregatibacter actinomycetemcomitans D7S-1] gi|32452622|gb|AAP43984.1| RcpC [Aggregatibacter actinomycetemcomitans] gi|290951867|gb|EFE01986.1| flp operon protein C [Aggregatibacter actinomycetemcomitans D7S-1] Length = 274 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 90/267 (33%), Gaps = 34/267 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN------VLIS--K 52 M L+ I V + + GI+ Q +I +L + K Sbjct: 1 MNYRTLLIISVLTLAVGIGGIMFTPAFDNTENQQTIIINNQSVPEAEKKPEKLILTAELK 60 Query: 53 GDLAVGMVVTPNILEW--VAFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 D++ G ++ + ++ PE++ + D + + N +Q L G L+ + G + Sbjct: 61 NDVSKGHLLQADDYILNEISVPEDSTLVDNDLREATTKNGIQGLQGYLMAENVRAGSFLS 120 Query: 110 LEKLVDRGNGGL--SSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSE---- 162 + ++ + SSL P + A + + S + I D+V V + S+ Sbjct: 121 NKSIISPNDPRFFTSSLNPNQEVAYRIYVRSGDDYILNTILSGDYVSVYSQQIASDSRNT 180 Query: 163 -RKPTVTVVLSNIRVIA---IDHNIDSDERVLV-----------GSTATLELTPMQAKAL 207 + + VL V+ + L++T QAK Sbjct: 181 YDRKDLVKVLGKAVVLQARNFAQVAEQGTEAEKALGLVPNNEVYAGYVALKITAEQAKKF 240 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDS 234 + +KL ++L + + S Sbjct: 241 YSLDRESKL-VILPAENNTQEVDSRGV 266 >gi|257793106|ref|YP_003186504.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479798|gb|ACV60115.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 272 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 76/234 (32%), Gaps = 25/234 (10%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 A +AG+ A+ LV+ + + + ++ DL VG V+ P + P Sbjct: 15 GAAWIAGLAALGLVTAF---VTDRVASHKVPMATAYVAAHDLTVGEVIGPKDVTRTVVPV 71 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132 + G + G V P+ +G + L G G+ L RA Sbjct: 72 STLPPGALT--------ASPIGKTVTAPVYQGQVLVGGDLGHMGGVDGVMRLYGMQTRAY 123 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAIDHNIDSDERVLV 191 + +S S I VDV+ +V N VIA+ D Sbjct: 124 PLTLSTQSVPLTDISVGQAVDVIAQMPSPYGAGNITKLVAQNAPVIAVATAQD------- 176 Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245 + + ++AL A + KL + L P+ + + + + Sbjct: 177 ----VILVGVTDSEALQMANAT-KLYVALSPETPWVPAETASTSIPGATSNTTQ 225 >gi|25027510|ref|NP_737564.1| hypothetical protein CE0954 [Corynebacterium efficiens YS-314] gi|259507082|ref|ZP_05749982.1| secreted protein [Corynebacterium efficiens YS-314] gi|23492792|dbj|BAC17764.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259165360|gb|EEW49914.1| secreted protein [Corynebacterium efficiens YS-314] Length = 215 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 75/225 (33%), Gaps = 36/225 (16%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 T L+ ++ +VAG + + V++ D+ G +T Sbjct: 14 RTLLLRRALAATLLIVAGFLFAGSLISTDP--------------RVVVFSRDIPAGTEIT 59 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121 LE P + V D I +E G + + G+ + + V L Sbjct: 60 DQDLELRRIPADLVPDQVIRIP------EEALGRITASSVTAGEWVTAPRFVGTELVSSL 113 Query: 122 SSLLPKGKR------AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 + + + ++ S + ++ P D + V+ + + S + Sbjct: 114 TDDIDPAAASTDPFNMVPLKLADPSIIP-LLLPGDTISVISQNPDTG---LPATIASGGK 169 Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 V+ + +D +T + L A A+ AA + L++VL Sbjct: 170 VVLVGDTAGAD-----PATVLIALPQTDAAAVAAAALNSPLAVVL 209 >gi|229495106|ref|ZP_04388852.1| SAF domain protein [Rhodococcus erythropolis SK121] gi|229318037|gb|EEN83912.1| SAF domain protein [Rhodococcus erythropolis SK121] Length = 234 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 80/225 (35%), Gaps = 35/225 (15%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 + + V A + ++ R + + V++S DL G V+ + +E Sbjct: 32 IAAVVLATLGVVLFFRG-------------DPATDTVAVVVSSRDLTPGQVIADSDVEIR 78 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 + + +G + D + G V PI G+ + ++++R GLS Sbjct: 79 EIDSKQLPEGVVSDTDL------VVGRTVAGPIRSGETVTDVRVLNRRLAGLSVG-TDDA 131 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-------------KPTVTVVLSNIRV 176 R + ++ + AV +++ D VDV+ V + R +L+ V Sbjct: 132 RIVPVRLADA-AVAEILRSGDVVDVLTVGPDTSRPDTPHPDTPNESVADKAPQILAAGAV 190 Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 +A+ R L L A + AA +++ R Sbjct: 191 VAL-VTTSESTRNQQEQVILLALPTPAANVVAAASLSNAITVTFR 234 >gi|297572143|ref|YP_003697917.1| SAF domain protein [Arcanobacterium haemolyticum DSM 20595] gi|296932490|gb|ADH93298.1| SAF domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 203 Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 55/177 (31%), Gaps = 22/177 (12%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 FA + + A LVS +++ DL G ++ + L + P Sbjct: 7 IGFAALVAVFAQSLVSALDSSAPARYRA--------VVAATDLPAGHQLSDSDLSVLPLP 58 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132 + + ++ G + V + KG I ++ +S G A Sbjct: 59 TQL--------PGSTVNVTDVSGHHLLVSVPKGALISTHHVLSPQTLEQAS---PGYVIA 107 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDE 187 + ++ + + +I +VD+ ++ +IRV + Sbjct: 108 PVLLADTGGLS-LIHTGSYVDLFKPGKESLDGSSSEAELIAHHIRVAGVAKTAGEKN 163 >gi|20808475|ref|NP_623646.1| hypothetical protein TTE2077 [Thermoanaerobacter tengcongensis MB4] gi|20517094|gb|AAM25250.1| hypothetical protein TTE2077 [Thermoanaerobacter tengcongensis MB4] Length = 187 Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 76/206 (36%), Gaps = 33/206 (16%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + +++ VF +A + + V +NV+ + + G V+T Sbjct: 2 SKIIKIGIITAVFVFLAAFLILNSVQG---------------TVNVVAAAKPINAGTVIT 46 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 ++L + P QE+ G + +KGD I ++ +G Sbjct: 47 QDMLTTKSIPASLA-------ADLVKNPQEIVGKSLNTSRVKGDFIPHSIVMQKG----- 94 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 + G ++++ +I D + +V++ +++ +S ++V +I+ Sbjct: 95 LEVAPGDVLISINVPYED--AKLISVGDTISLVLLSNIAGGANQT---VSGLKVYSIEQT 149 Query: 183 IDSDERVLVGSTATLELTPMQAKALV 208 + V + A LE TP +A + Sbjct: 150 TSAVNGT-VSTIAVLETTPDKASLIA 174 >gi|332534350|ref|ZP_08410191.1| hypothetical protein PH505_bg00020 [Pseudoalteromonas haloplanktis ANT/505] gi|332036169|gb|EGI72643.1| hypothetical protein PH505_bg00020 [Pseudoalteromonas haloplanktis ANT/505] Length = 255 Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 31/250 (12%), Positives = 80/250 (32%), Gaps = 23/250 (9%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 + + + S + N + + +++ G VT + +E + Sbjct: 8 GATTAALTLLITSGMLASALGIRQVNDENSVTAWVVNKNMSAGQTVTVHDVEQKSID--- 64 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD 135 + + + L G + + P+ + + LS +P G+ T+ Sbjct: 65 -PSNYSNIALSVQNPRALIGQKLATNKMVEQPLFDTDFIRAKSQNLSEAIPAGRVLYTLK 123 Query: 136 ISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI--------------DH 181 ++ I D +D+V + V V ++++I + D+ Sbjct: 124 LNTLDIPLSRIHKGDRLDIVA-----KTNRLVRTVARDVQLIGVSKGPKSQAEKNGVMDN 178 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 G + L + P +L + K+S+++ S D+ ++ Sbjct: 179 LAKESNSATGGVSLVLAVLPKDVYSLAGIDNADKVSIIVHSAYDIEQGRLQNFSRLQTSR 238 Query: 242 EGKEIQIIKA 251 + ++ +K Sbjct: 239 TIEVVKGVKN 248 >gi|307261006|ref|ZP_07542688.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869308|gb|EFN01103.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 268 Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 60/199 (30%), Gaps = 18/199 (9%) Query: 6 LMGIVVSGVFALVAGIIAM--------RLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 L+ I + + G+ + V E + K I + DL Sbjct: 2 LLIISLVIIVLGFGGLFMLPTNEGTTTENVGTTTTSEESSNSPVTEKVITTVTLNRDLEK 61 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE---LDGVLVRVPILKGDPIRLEKLV 114 G ++ P D+ + L G LV + G + ++ Sbjct: 62 GTLIQPEDYTLSELTVAETSPLVDSDLKALLDAETNHSLQGFLVTENLKMGSLLTPNLII 121 Query: 115 DRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL----SERKPTV 167 + L SL P + A + + + ++ D V V V+ + ++ Sbjct: 122 TPEDPRFILLSLDPSQEVAYRIYVQDAEQYILDSVRGGDLVSVYSVQQDLAHPEREQNSL 181 Query: 168 TVVLSNIRVIAIDHNIDSD 186 + N++V+ + + Sbjct: 182 VKIADNLKVLQVKSFTQEE 200 >gi|258510582|ref|YP_003184016.1| SAF domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477308|gb|ACV57627.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 264 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 68/207 (32%), Gaps = 25/207 (12%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 A +AG+ A+ LV+ + + + ++ DL VG + + P Sbjct: 17 AWIAGLAALGLVTAF---VMDRVATHKVPMATAYVASHDLTVGETIGAKDVTRTVVPVST 73 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATM 134 + G + G V P+ +G + L G G+ L RA + Sbjct: 74 LPPGALT--------ASPIGKTVTAPVYQGQVLVGGDLGHMGGVNGVMRLYGMQTRAYPL 125 Query: 135 DISISSAVGGMIKPNDHVDVVMVRSLSER-KPTVTVVLSNIRVIAIDHNIDSDERVLVGS 193 +S S I VDV+ +V N VIA+ D Sbjct: 126 TLSTQSVPMTDISVGQAVDVIAQMPSPNGAGNVTKLVAQNAPVIAVATAQD--------- 176 Query: 194 TATLELTPMQAKALVAAQSVAKLSLVL 220 + + ++AL A + KL + L Sbjct: 177 --VILVGVTDSEALQMANAT-KLYVAL 200 >gi|325676315|ref|ZP_08155994.1| hypothetical protein HMPREF0724_13777 [Rhodococcus equi ATCC 33707] gi|325552876|gb|EGD22559.1| hypothetical protein HMPREF0724_13777 [Rhodococcus equi ATCC 33707] Length = 234 Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 11/137 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL++ DL G V+TP+ + VA P+ ++ +G + V + G V P+ G+ Sbjct: 66 PVLVAAHDLTPGTVLTPDDVRVVARPDPDLPEGSVRVVA------DASGRTVASPVRAGE 119 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + +L+ ++ R + ++ + +I+ D VDV+ V + Sbjct: 120 MLTDVRLLGPRLTEAAAG-APDARMVPVRLTDP-GLSELIRAGDRVDVLTV---DQTSGP 174 Query: 167 VTVVLSNIRVIAIDHNI 183 V+A D + Sbjct: 175 TETRRPAATVLATDATV 191 >gi|171921000|gb|ACB59183.1| RcpC [Actinobacillus suis ATCC 33415] Length = 269 Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 65/210 (30%), Gaps = 20/210 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAM-----RLVSPHHVQTEEVITENPAKFINVLISK--- 52 M L I + G+ + + T P V+ + Sbjct: 1 MNYRVLFIISTFILVIGFGGLFMLPNAEDNVPQNETAAASTETTTQPEVATKVITTATLN 60 Query: 53 GDLAVGMVVTPNILEWVA--FPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 DL G ++ PE + + + + + + L G + I G ++ Sbjct: 61 RDLTKGTLIQAEDYTLSELTVPETSPLLSNDLKSLLEAATVPTLQGFVATENIKAGSLLQ 120 Query: 110 LEKLVDRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVV-----MVRSLS 161 E L+ + L S+ P+ + A + I S + ++ D V V + Sbjct: 121 PELLITPDDPRFILFSINPQQEVAYRVYIQSAEQYILDSVRSGDSVSVFSQQTDLAHRER 180 Query: 162 ERKPTVTVVLSNIRVIAIDHNIDSDERVLV 191 ++ V + N+ V+ + + + Sbjct: 181 DQGSLVK-LADNLTVLQVKTFTAEENKNAS 209 >gi|219850069|ref|YP_002464502.1| Flp pilus assembly protein CpaB [Chloroflexus aggregans DSM 9485] gi|219544328|gb|ACL26066.1| Flp pilus assembly protein CpaB [Chloroflexus aggregans DSM 9485] Length = 351 Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 86/280 (30%), Gaps = 84/280 (30%) Query: 42 PAKFINVLISKGDLAVGMVV-TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 +NV+ + D+ ++ P +LE V P D+ ++ +++ ++ G LV Sbjct: 47 AIPLVNVVQAAVDIEANTLLNDPTLLEVVEVPITE-----FDEQNEFSSINDVFGKLVIN 101 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGK---RAATMDISISSAVGGMIKPNDHVDVVMV 157 P+ G PI + + + G + G+ +A + ++ S V + ND VDV+ Sbjct: 102 PVQAGRPITRDNVRNPGLAQMLPTAEPGQPRVKAYPLVVNNLSGVADQLAVNDFVDVIAT 161 Query: 158 RSLSERKP-----------------------------TVTVVLSNIRVI-----AIDHNI 183 S+ + T ++ +V+ AI Sbjct: 162 FSVERQIIRPGPRQVITVNDVDQVIREYEFGETQTFLTTKTIIQRAKVLQILRPAIPTPA 221 Query: 184 DSDERVLVGS----------------------------------------TATLELTPMQ 203 + L L Q Sbjct: 222 TPEGEAAPAQGEALPTQSSSLPQVDASGQPITSSQLENATPGSTLTQSIWVVMLALNDQQ 281 Query: 204 AKALVAA-QSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 + L A QS A++ L LRS D+ + + + E Sbjct: 282 IELLEFALQSNARIVLALRSSDDVAIEQTSGITIDLLVRE 321 >gi|332162953|ref|YP_004299530.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604224|emb|CBY25722.1| flp pilus assembly protein RcpC/CpaB [Yersinia enterocolitica subsp. palearctica Y11] gi|325667183|gb|ADZ43827.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862296|emb|CBX72457.1| hypothetical protein YEW_HH31890 [Yersinia enterocolitica W22703] Length = 277 Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 56/169 (33%), Gaps = 6/169 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + + V + GI+ + Q + I + IS DL G + Sbjct: 1 MNRKFILLLSLLIVAVGIVGILINTDNDQKNTQDSTELNREQDTNIALAISTHDLPSGTI 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T N + + ++ +++ L++ +L G + + L + Sbjct: 61 LTENDYAIKKLLLKESNELV---KSNISSSADINRHLLKENVLAGSYLTKDMLATPDSDE 117 Query: 121 L-SSLLPKGKRAATMDISISS-AVGGMIKPNDHVDV-VMVRSLSERKPT 166 +L KG ++ + + D + ++ +RK Sbjct: 118 FNHLVLKKGNVIYKFNLKKKDEYLLDSLNTGDRLSFQLITLETDKRKGM 166 >gi|238790279|ref|ZP_04634053.1| hypothetical protein yfred0001_31080 [Yersinia frederiksenii ATCC 33641] gi|238721629|gb|EEQ13295.1| hypothetical protein yfred0001_31080 [Yersinia frederiksenii ATCC 33641] Length = 288 Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 11/176 (6%) Query: 7 MGIVVSGVFALVAGIIAMRLVSP---HHVQTEEVITENPAKFINV--LISKGDLAVGMVV 61 M + V + GI + + + ++V I+K L G ++ Sbjct: 1 MAMAVLLILVGGLGIFIFSGNKNDGLSENTGTQTEKKPAIEQVSVNFTIAKVGLKAGSII 60 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120 T ++ + G Q + G + V I IR ++ Sbjct: 61 TEQDIKIETV---LLEPGHWLVEEQDAGQLFMVGYVTLVDINANSRIRTSQIAMPGSPAY 117 Query: 121 LSSLLPKGKRAATMDISISS-AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 LS ++ G ++S + K +++D+ ++ +L + Sbjct: 118 LSQMVTPGYHVYAFNLSEQQISQLAATKAGEYIDIYFRYNMIISGYKTQ-ILQRVE 172 >gi|227496332|ref|ZP_03926623.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] gi|226834133|gb|EEH66516.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] Length = 219 Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 74/216 (34%), Gaps = 30/216 (13%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 +V G+ A ++ + L+ P P + V+++ + G V+ L Sbjct: 27 LVVGLCVGAAALVTLTLLRPG-----------PGEVAQVIVTTRQVVAGEVLQDADLARR 75 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 P + + D E+ G V + +G + + L+S L + Sbjct: 76 ELPVAALPRTGLAD-------GEVVGTRAAVTLEEGTVLTTSM----TSQSLTSDLLPHE 124 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSNIRVIAIDHNIDSD 186 R + + + + +P VD+V + V+ RV+ H +SD Sbjct: 125 RVVQVPVEV---GAELARPGAVVDLVAEAPQAGDGAGAEVPTVICDGARVLLTQHEGNSD 181 Query: 187 ERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVL 220 + TL + A +V A + L +VL Sbjct: 182 RWSSGATVPLITLAVPASTASLVVGAATHGALGIVL 217 >gi|183984494|ref|YP_001852785.1| hypothetical protein MMAR_4524 [Mycobacterium marinum M] gi|183177820|gb|ACC42930.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length = 219 Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 12/183 (6%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 V+++ DL+ G +T + + DG DV L G + Sbjct: 47 PSPDTNLSEVVVAARDLSPGTPLTTADVRLEMRSAATLPDGSQTDV------GALVGATL 100 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 P +G+ + +++ ++ G R + ++ SA+ +I+ D VDV+ Sbjct: 101 ASPTRRGEVLTDVRILGSRLAESTA--GPGARVVPLHLAD-SALIDLIRVGDVVDVLAAP 157 Query: 159 SLSE-RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 ++ P VV ++ V+ + + + + + L A + + L+ Sbjct: 158 PTTQPSPPAAKVVATDAVVVLV--SAKQELQTHADRVVLVALPARLANMVAGSALGQTLT 215 Query: 218 LVL 220 L L Sbjct: 216 LTL 218 >gi|258654757|ref|YP_003203913.1| SAF domain-containing protein [Nakamurella multipartita DSM 44233] gi|258557982|gb|ACV80924.1| SAF domain protein [Nakamurella multipartita DSM 44233] Length = 219 Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 20/173 (11%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 VL+ DL +G V+ + A DG + D + G ++ +G Sbjct: 64 TPVLVLTRDLPIGAVLLATDVTTTAVLRP--PDGALTDPGP------VAGRVLSGAARRG 115 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 + + +LVD + G+ A + + ++ + +++P HV VV V Sbjct: 116 EVLTDVRLVDP----IGPAPGPGRVAVPIRPADATVI-DLLRPGMHVAVVAVDDAGG--- 167 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 T ++++ V+ + + L + A +VAA L+L Sbjct: 168 -ATALVADAVVLLVGDATARRDEQAP---VVLAVPQDSADQVVAAALTGTLAL 216 >gi|260204206|ref|ZP_05771697.1| hypothetical protein MtubK8_07852 [Mycobacterium tuberculosis K85] gi|289573628|ref|ZP_06453855.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289538059|gb|EFD42637.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length = 218 Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 61/189 (32%), Gaps = 11/189 (5%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 + + V+++ DL G V+TP + + DG D + Sbjct: 40 AGVAALRSNPEDDRAEVVVAAHDLRPGTVLTPGDVRLEKRSATTLPDGSQAD------LD 93 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 + G + P +G+ + +L+ ++ R + ++ S+ V +++ D Sbjct: 94 AVVGSTLASPTRRGEVLTDVRLLGSRLAESTA--GPDARIVPLHLADSALV-DLVRVGDV 150 Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 VDV+ + I V+ + + L A + A Sbjct: 151 VDVLAAPVTDSPAALRLLATDAIVVLVSAQQ--KAQAADSDRVVLVALPARLANTVAGAA 208 Query: 212 SVAKLSLVL 220 ++L L Sbjct: 209 LGQTVTLTL 217 >gi|77454606|ref|YP_345474.1| hypothetical protein pREL1_0039 [Rhodococcus erythropolis PR4] gi|77019606|dbj|BAE45982.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 234 Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 67/218 (30%), Gaps = 28/218 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + + +VA I + VS +VL+ D+ G ++ Sbjct: 40 RRRPIYLAIGVALVVVAVIGMLAAVSAMRA------------TTDVLVLARDVQQGQIIE 87 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L + + G+ + G + + D+ G Sbjct: 88 SKDLTVKTVNVD-----ADLGALSAGERGRVIGMSAGTRLPAGTVLMPAAVTDQVVPG-- 140 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 +G + + I P D + VV + P + + +V + Sbjct: 141 ----EGLTMVGITVGYPHLPSEAILPGDMIRVVDTPREGDDPPVTGPINTKAQVYSTTTI 196 Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ++ E +T L + +A + A + ++S+VL Sbjct: 197 AEAGE-----TTLNLLVPEAEANWVAARAATKRVSIVL 229 >gi|187251719|ref|YP_001876201.1| SAF domain-containing protein [Elusimicrobium minutum Pei191] gi|186971879|gb|ACC98864.1| SAF domain protein [Elusimicrobium minutum Pei191] Length = 207 Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 73/218 (33%), Gaps = 35/218 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +V+S + + A + + K +N+ ++ D+ G V Sbjct: 14 MSPKVFAFLVMSVILIMFAVLFIF----------AHKKRMHETKHVNIFVAAEDINKGTV 63 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T +L V G +Q L G V I++G + + Sbjct: 64 ITQRLLSPVKMIAHE--PGAFLVGD----IQLLLGSYALVDIVQGSQMTKHIITAEP--- 114 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 + + G R ++ + + K + +++ R T+ NIR++++ Sbjct: 115 VITAPDIGYRLYSLVLPYQAVPRDHTKTD--INIY-------RGETLINSFKNIRIVSMK 165 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 + + LE+ P A+ L ++ L + Sbjct: 166 SVPEE-------TAFVLEVDPQTAQELFFVENSKALHV 196 >gi|15608130|ref|NP_215505.1| hypothetical protein Rv0990c [Mycobacterium tuberculosis H37Rv] gi|15840415|ref|NP_335452.1| hypothetical protein MT1019 [Mycobacterium tuberculosis CDC1551] gi|148660771|ref|YP_001282294.1| hypothetical protein MRA_0997 [Mycobacterium tuberculosis H37Ra] gi|167968056|ref|ZP_02550333.1| hypothetical protein MtubH3_08483 [Mycobacterium tuberculosis H37Ra] gi|254231287|ref|ZP_04924614.1| hypothetical protein TBCG_00979 [Mycobacterium tuberculosis C] gi|254363908|ref|ZP_04979954.1| hypothetical protein TBHG_00974 [Mycobacterium tuberculosis str. Haarlem] gi|306775124|ref|ZP_07413461.1| hypothetical protein TMAG_00929 [Mycobacterium tuberculosis SUMu001] gi|306781961|ref|ZP_07420298.1| hypothetical protein TMBG_01621 [Mycobacterium tuberculosis SUMu002] gi|306783684|ref|ZP_07422006.1| hypothetical protein TMCG_00603 [Mycobacterium tuberculosis SUMu003] gi|306788039|ref|ZP_07426361.1| hypothetical protein TMDG_03597 [Mycobacterium tuberculosis SUMu004] gi|306792372|ref|ZP_07430674.1| hypothetical protein TMEG_00874 [Mycobacterium tuberculosis SUMu005] gi|306796774|ref|ZP_07435076.1| hypothetical protein TMFG_02809 [Mycobacterium tuberculosis SUMu006] gi|306802661|ref|ZP_07439329.1| hypothetical protein TMHG_00166 [Mycobacterium tuberculosis SUMu008] gi|306806841|ref|ZP_07443509.1| hypothetical protein TMGG_03063 [Mycobacterium tuberculosis SUMu007] gi|306967040|ref|ZP_07479701.1| hypothetical protein TMIG_03552 [Mycobacterium tuberculosis SUMu009] gi|306971230|ref|ZP_07483891.1| hypothetical protein TMJG_02659 [Mycobacterium tuberculosis SUMu010] gi|307078960|ref|ZP_07488130.1| hypothetical protein TMKG_01481 [Mycobacterium tuberculosis SUMu011] gi|307083518|ref|ZP_07492631.1| hypothetical protein TMLG_01695 [Mycobacterium tuberculosis SUMu012] gi|2052124|emb|CAB08150.1| HYPOTHETICAL PROTEIN Rv0990c [Mycobacterium tuberculosis H37Rv] gi|13880585|gb|AAK45266.1| hypothetical protein MT1019 [Mycobacterium tuberculosis CDC1551] gi|124600346|gb|EAY59356.1| hypothetical protein TBCG_00979 [Mycobacterium tuberculosis C] gi|134149422|gb|EBA41467.1| hypothetical protein TBHG_00974 [Mycobacterium tuberculosis str. Haarlem] gi|148504923|gb|ABQ72732.1| hypothetical protein MRA_0997 [Mycobacterium tuberculosis H37Ra] gi|308216331|gb|EFO75730.1| hypothetical protein TMAG_00929 [Mycobacterium tuberculosis SUMu001] gi|308325350|gb|EFP14201.1| hypothetical protein TMBG_01621 [Mycobacterium tuberculosis SUMu002] gi|308331529|gb|EFP20380.1| hypothetical protein TMCG_00603 [Mycobacterium tuberculosis SUMu003] gi|308335333|gb|EFP24184.1| hypothetical protein TMDG_03597 [Mycobacterium tuberculosis SUMu004] gi|308339140|gb|EFP27991.1| hypothetical protein TMEG_00874 [Mycobacterium tuberculosis SUMu005] gi|308342811|gb|EFP31662.1| hypothetical protein TMFG_02809 [Mycobacterium tuberculosis SUMu006] gi|308346664|gb|EFP35515.1| hypothetical protein TMGG_03063 [Mycobacterium tuberculosis SUMu007] gi|308350579|gb|EFP39430.1| hypothetical protein TMHG_00166 [Mycobacterium tuberculosis SUMu008] gi|308355270|gb|EFP44121.1| hypothetical protein TMIG_03552 [Mycobacterium tuberculosis SUMu009] gi|308359224|gb|EFP48075.1| hypothetical protein TMJG_02659 [Mycobacterium tuberculosis SUMu010] gi|308363136|gb|EFP51987.1| hypothetical protein TMKG_01481 [Mycobacterium tuberculosis SUMu011] gi|308366793|gb|EFP55644.1| hypothetical protein TMLG_01695 [Mycobacterium tuberculosis SUMu012] gi|323720557|gb|EGB29638.1| hypothetical protein TMMG_02985 [Mycobacterium tuberculosis CDC1551A] Length = 218 Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 11/189 (5%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 + + V+++ DL G +TP + + DG D + Sbjct: 40 AGVAALRSNPEDDRSEVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQAD------LD 93 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 + G + P +G+ + +L+ ++ R + ++ S+ V +++ D Sbjct: 94 AVVGSTLASPTRRGEVLTDVRLLGSRLAESTA--GPDARIVPLHLADSALV-DLVRVGDV 150 Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 VDV+ + I V+ + + L A + A Sbjct: 151 VDVLAAPVTDSPAALRLLATDAIVVLVSAQQ--KAQAADSDRVVLVALPARLANTVAGAA 208 Query: 212 SVAKLSLVL 220 ++L L Sbjct: 209 LGQTVTLTL 217 >gi|307249760|ref|ZP_07531738.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858175|gb|EFM90253.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 268 Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 60/199 (30%), Gaps = 18/199 (9%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT--------ENPAKFINVLISKGDLAV 57 L+ I + + G+ + + + T K I + DL Sbjct: 2 LLIISLVIIVLGFGGLFMLPNNEGTNTENVSTTTSSEESSNSPVTEKVITTVTLNRDLEK 61 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIRLEKLV 114 G ++ P D+ + L G LV + G + ++ Sbjct: 62 GTLIQPEDYTLSELTVAETSPLVDSDLKALLDAEPNHSLQGFLVTENLKMGSLLTPNLII 121 Query: 115 DRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL----SERKPTV 167 + L SL P + A + + + ++ D V V V+ + ++ Sbjct: 122 TPEDPRFILLSLDPSQEVAYRIYVQDAEQYILDSVRGGDLVSVYSVQQDLAHPEREQNSL 181 Query: 168 TVVLSNIRVIAIDHNIDSD 186 + N++V+ + + Sbjct: 182 VKIADNLKVLQVKSFTQEE 200 >gi|312138618|ref|YP_004005954.1| hypothetical protein REQ_11700 [Rhodococcus equi 103S] gi|311887957|emb|CBH47269.1| hypothetical protein REQ_11700 [Rhodococcus equi 103S] Length = 206 Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 11/137 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL++ DL G V+TP+ + VA P+ ++ +G + V + G V P+ G+ Sbjct: 38 PVLVAAHDLTPGTVLTPDDVRVVARPDPDLPEGSVRVVA------DASGRTVASPVRAGE 91 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + +L+ ++ R + ++ + +I+ D VDV+ V + Sbjct: 92 MLTDVRLLGPRLTEAAAG-APDARMVPVRLTDP-GLSELIRAGDRVDVLTV---DQTSGP 146 Query: 167 VTVVLSNIRVIAIDHNI 183 V+A D + Sbjct: 147 TETRRPAATVLATDATV 163 >gi|31792181|ref|NP_854674.1| hypothetical protein Mb1017c [Mycobacterium bovis AF2122/97] gi|121636917|ref|YP_977140.1| hypothetical protein BCG_1045c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215402806|ref|ZP_03414987.1| hypothetical protein Mtub0_03760 [Mycobacterium tuberculosis 02_1987] gi|215410589|ref|ZP_03419397.1| hypothetical protein Mtub9_04524 [Mycobacterium tuberculosis 94_M4241A] gi|215426268|ref|ZP_03424187.1| hypothetical protein MtubT9_07731 [Mycobacterium tuberculosis T92] gi|215445138|ref|ZP_03431890.1| hypothetical protein MtubT_04052 [Mycobacterium tuberculosis T85] gi|224989389|ref|YP_002644076.1| hypothetical protein JTY_1017 [Mycobacterium bovis BCG str. Tokyo 172] gi|260185899|ref|ZP_05763373.1| hypothetical protein MtubCP_07697 [Mycobacterium tuberculosis CPHL_A] gi|260200017|ref|ZP_05767508.1| hypothetical protein MtubT4_07787 [Mycobacterium tuberculosis T46] gi|289442410|ref|ZP_06432154.1| hypothetical protein TBLG_03153 [Mycobacterium tuberculosis T46] gi|289446571|ref|ZP_06436315.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289744726|ref|ZP_06504104.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289749518|ref|ZP_06508896.1| hypothetical protein TBDG_01743 [Mycobacterium tuberculosis T92] gi|289757073|ref|ZP_06516451.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|294995178|ref|ZP_06800869.1| hypothetical protein Mtub2_11847 [Mycobacterium tuberculosis 210] gi|298524484|ref|ZP_07011893.1| hypothetical protein TBAG_03051 [Mycobacterium tuberculosis 94_M4241A] gi|31617769|emb|CAD93878.1| HYPOTHETICAL PROTEIN Mb1017c [Mycobacterium bovis AF2122/97] gi|121492564|emb|CAL71032.1| Hypothetical protein BCG_1045c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772502|dbj|BAH25308.1| hypothetical protein JTY_1017 [Mycobacterium bovis BCG str. Tokyo 172] gi|289415329|gb|EFD12569.1| hypothetical protein TBLG_03153 [Mycobacterium tuberculosis T46] gi|289419529|gb|EFD16730.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289685254|gb|EFD52742.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289690105|gb|EFD57534.1| hypothetical protein TBDG_01743 [Mycobacterium tuberculosis T92] gi|289712637|gb|EFD76649.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298494278|gb|EFI29572.1| hypothetical protein TBAG_03051 [Mycobacterium tuberculosis 94_M4241A] gi|326904784|gb|EGE51717.1| hypothetical protein TBPG_02700 [Mycobacterium tuberculosis W-148] Length = 218 Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 11/189 (5%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 + + V+++ DL G +TP + + DG D + Sbjct: 40 AGVAALRSNPEDDRAEVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQAD------LD 93 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 + G + P +G+ + +L+ ++ R + ++ S+ V +++ D Sbjct: 94 AVVGSTLASPTRRGEVLTDVRLLGSRLAESTA--GPDARIVPLHLADSALV-DLVRVGDV 150 Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 VDV+ + I V+ + + L A + A Sbjct: 151 VDVLAAPVTDSPAALRLLATDAIVVLVSAQQ--KAQAADSDRVVLVALPARLANTVAGAA 208 Query: 212 SVAKLSLVL 220 ++L L Sbjct: 209 LGQTVTLTL 217 >gi|215429850|ref|ZP_03427769.1| hypothetical protein MtubE_04012 [Mycobacterium tuberculosis EAS054] gi|289753048|ref|ZP_06512426.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289693635|gb|EFD61064.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length = 218 Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 11/189 (5%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 + + V+++ DL G +TP + + DG D + Sbjct: 40 AGVAALRSNPEDDRAEVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQAD------LD 93 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 + G + P +G+ + +L+ ++ R + ++ S+ V +++ D Sbjct: 94 AVVGSTLASPTRRGEVLTDVRLLGSRLAESTA--GPDARIVPLHLADSALV-DLVRVGDV 150 Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 VDV+ + I V+ + + L A + A Sbjct: 151 VDVLAAPVTDSPAALRLLATDAIVVLVSAQQ--KAQAADSDRVVLVALPARLANTVAGAA 208 Query: 212 SVAKLSLVL 220 ++L L Sbjct: 209 LGQTVTLTL 217 >gi|148822199|ref|YP_001286953.1| hypothetical protein TBFG_11008 [Mycobacterium tuberculosis F11] gi|218752660|ref|ZP_03531456.1| hypothetical protein MtubG1_04075 [Mycobacterium tuberculosis GM 1503] gi|253799982|ref|YP_003032983.1| hypothetical protein TBMG_02999 [Mycobacterium tuberculosis KZN 1435] gi|254549974|ref|ZP_05140421.1| hypothetical protein Mtube_05853 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289555228|ref|ZP_06444438.1| hypothetical protein TBXG_02978 [Mycobacterium tuberculosis KZN 605] gi|289761124|ref|ZP_06520502.1| hypothetical protein TBIG_02544 [Mycobacterium tuberculosis GM 1503] gi|297633515|ref|ZP_06951295.1| hypothetical protein MtubK4_05303 [Mycobacterium tuberculosis KZN 4207] gi|297730500|ref|ZP_06959618.1| hypothetical protein MtubKR_05383 [Mycobacterium tuberculosis KZN R506] gi|313657829|ref|ZP_07814709.1| hypothetical protein MtubKV_05383 [Mycobacterium tuberculosis KZN V2475] gi|148720726|gb|ABR05351.1| hypothetical protein TBFG_11008 [Mycobacterium tuberculosis F11] gi|253321485|gb|ACT26088.1| hypothetical protein TBMG_02999 [Mycobacterium tuberculosis KZN 1435] gi|289439860|gb|EFD22353.1| hypothetical protein TBXG_02978 [Mycobacterium tuberculosis KZN 605] gi|289708630|gb|EFD72646.1| hypothetical protein TBIG_02544 [Mycobacterium tuberculosis GM 1503] gi|328459724|gb|AEB05147.1| hypothetical protein TBSG_03018 [Mycobacterium tuberculosis KZN 4207] Length = 218 Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 11/189 (5%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 + + V+++ DL G +TP + + DG D + Sbjct: 40 AGVAALRSNPEDDRSEVVVAAQDLRPGTALTPGDVRLEKRSATTLPDGSQAD------LD 93 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 + G + P +G+ + +L+ ++ R + ++ S+ V +++ D Sbjct: 94 AVVGSTLASPTRRGEVLTDVRLLGSRLAESTA--GPDARIVPLHLADSALV-DLVRVGDV 150 Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 VDV+ + I V+ + + L A + A Sbjct: 151 VDVLAAPVTDSPAALRLLATDAIVVLVSAQQ--KAQAADSDRVVLVALPARLANTVAGAA 208 Query: 212 SVAKLSLVL 220 ++L L Sbjct: 209 LGQTVTLTL 217 >gi|213966094|ref|ZP_03394282.1| SAF domain protein [Corynebacterium amycolatum SK46] gi|213951292|gb|EEB62686.1| SAF domain protein [Corynebacterium amycolatum SK46] Length = 205 Score = 62.1 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 33/219 (15%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + T + IV VF G+ A+ ++P V+IS +A G V Sbjct: 17 RPTTIRRIVALTVFLCAVGLAAVESLTPRSG------------HTRVVISAKSIAAGASV 64 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + P + V G + D+ + G + + G+ +++V Sbjct: 65 AEQDVAFKDIPRDLVPGGAVTDIA------AVRGRTLATGMSPGEIFTEQRMVGPSLAKS 118 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 + + K + ++ S V + D VD+V + + + RV+ I Sbjct: 119 LTGTSESK-IIAITLTDSGIVSA-LHTGDSVDIVSTA---DERGMAAPIAHGARVVNI-- 171 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + + L A+ + A + L+L+L Sbjct: 172 --------VDDEVVLVALPAGAAEVVAATSLASPLTLLL 202 >gi|255325459|ref|ZP_05366563.1| SAF domain protein [Corynebacterium tuberculostearicum SK141] gi|255297545|gb|EET76858.1| SAF domain protein [Corynebacterium tuberculostearicum SK141] Length = 230 Score = 61.7 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 65/212 (30%), Gaps = 13/212 (6%) Query: 19 AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 ++ + + + V + DL G + ++ P ++ D Sbjct: 16 GVVVRRAIAVALLIAALASALSAAKELPRVPVFSRDLPAGAELALADVDLARLPSSSIPD 75 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS- 137 + +EL G ++ KG+ I +L+ + A + + Sbjct: 76 SAV-----AAKPEELTGRVITAAAGKGEVITDARLLGEELVSSLVGGSEAAAARMIPVKL 130 Query: 138 ISSAVGGMIKPNDHVDVV----MVRSLSERKPTVTVVLSNIRVIAID---HNIDSDERVL 190 + + D VDVV S S+ RVIA + S E Sbjct: 131 AEPDIIPHLHHGDTVDVVTAVDAASSPSDVGEGEAPTAPTARVIATGGRVVSTSSAEGEA 190 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 ST L L A + AA L++V+ Sbjct: 191 SSSTVLLALPHDHANDVAAASLSQPLTVVIVG 222 >gi|119715033|ref|YP_921998.1| SAF domain-containing protein [Nocardioides sp. JS614] gi|119535694|gb|ABL80311.1| SAF domain [Nocardioides sp. JS614] Length = 211 Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 15/170 (8%) Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + DL G V+ P L V F ++V G DD + G + P+ G+P+ Sbjct: 53 AARDLTAGTVLAPGDLRAVGFAPDSVPAGASDDAI------DAVGRTLAAPLRAGEPVTD 106 Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV 170 ++V G A + + + V +++ D VD+V + +VV Sbjct: 107 VRVVGPALTDGY----PGLTAVPVRLPDAGMV-DLLRVGDRVDLVAA---DPQGGGASVV 158 Query: 171 LSNIRVIAI-DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 +++ V+A+ D L G + P + A L++ Sbjct: 159 ATDVPVLAVPAAGPDVGATGLPGRLVVVGAEPADVARIADASVRTFLTIA 208 >gi|148655421|ref|YP_001275626.1| SAF domain-containing protein [Roseiflexus sp. RS-1] gi|148567531|gb|ABQ89676.1| SAF domain [Roseiflexus sp. RS-1] Length = 338 Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 78/276 (28%), Gaps = 71/276 (25%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI--LEWVAFPEENVFDGFIDDVHQ 86 P V P V+ ++ D+ V+T L PE + Sbjct: 30 PTPVPEALPQEPTPVPLRKVVAARVDIPANTVLTDTETFLTLRDIPE---PEYNAAPDQY 86 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP-------KGKRAATMDISIS 139 ++ EL + + + IR L GLS +P + +++ Sbjct: 87 FTSVNELTTKVTLRALNATEIIRARDLT---EAGLSFQVPLPDSPDTPRDKVFPLEVGNL 143 Query: 140 SAVGGMIKPNDHVDVVMVR-------------------------SLSERKPTVTVVLSNI 174 + V I+P D VD+VM + ++ N+ Sbjct: 144 TGVADQIRPGDAVDLVMTYEIRRLIIRPSLTLDPETGQLVVTPLEETLVDRVTKTMVQNV 203 Query: 175 RVI-----AIDHNIDSDERVLVGSTAT----------------------LELTPMQAKAL 207 RV+ AI + TA L +T +A+ + Sbjct: 204 RVLRVLKPAIPQEAGTPTPAGQQGTAPPPPPSSTQTPDTFVPGAQWILLLAMTDQEAEIV 263 Query: 208 --VAAQS--VAKLSLVLRSIADLNPSSSEDSDVWDV 239 Q +++LVLR D + + + Sbjct: 264 KFTLDQQDPKPQITLVLRGRDDSAIEDTTGITLRLL 299 >gi|218670668|ref|ZP_03520339.1| Flp pilus assembly protein CpaB [Rhizobium etli GR56] Length = 133 Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 2/105 (1%) Query: 42 PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101 A+ ++++ + G + L + +P G + E Sbjct: 19 KAEERTLVVAAKPMRFGDRIRSENLRAIPWPSNETPAGSFVSIEAVVG-NEAQPRYAMAA 77 Query: 102 ILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGM 145 I G+P+ K+ G LS+ L +G +A ++ ++ V + Sbjct: 78 IDPGEPVLSSKITGTGERATLSAALDQGMKAVSIRVNDVLGVARL 122 >gi|146351302|ref|YP_001210529.1| hypothetical protein pAL1.082 [Arthrobacter nitroguajacolicus] gi|146218866|emb|CAL09937.1| putative membrane protein [Arthrobacter nitroguajacolicus] Length = 238 Score = 61.3 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 16/175 (9%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 I V + D+ G +V + L V P + ++ G V I +G Sbjct: 75 ITVFSASKDITRGAIVQASDLTTVQIPANQPIP-----ALSASNASDVIGKTAAVDIPQG 129 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 L+ + N + L G + ++ + +K D V +V P Sbjct: 130 T------LLSQNNTTSDTGLQAGNSIVGISLTSAQLPPYPLKAGDQVRIVDTPINQGEPP 183 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 T VI + V +T +E+ +A L A + +++L+L Sbjct: 184 KETPNSIKATVI-----TSKTDSVSGKTTVAVEVLEAKAPDLAARAATGRVALIL 233 >gi|83589197|ref|YP_429206.1| hypothetical protein Moth_0329 [Moorella thermoacetica ATCC 39073] gi|83572111|gb|ABC18663.1| hypothetical protein Moth_0329 [Moorella thermoacetica ATCC 39073] Length = 212 Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 70/232 (30%), Gaps = 39/232 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + I + A I+A K + V+ + + G Sbjct: 1 MSRKVGIVISLILALIFTAAILAAG----------NGKYRQATKTVEVVKAVRFIPAGER 50 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + + V PE ++L+G +V +LK + + G Sbjct: 51 ITADSITTVRVPESMASGLA-------TNPKDLEGKEAKVSLLKDQFVWKD-----AAGE 98 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--ERKPTVTVVLSNI---R 175 L++ G + + A G + P + V++ + + + N+ + Sbjct: 99 LAA--GPGMVEVVLPVD--LAASGAVWPGERVNIHIAVKNNNPGSSAPSPKICENVLVTK 154 Query: 176 VIAIDHNIDSDERV--------LVGSTATLELTPMQAKALVAAQSVAKLSLV 219 V+ D + V +E+ LV A + + LV Sbjct: 155 VLGQDGVEIEPGKTTGLNPTTNKVPVAVGVEVPKDVEDVLVQAAANKTVYLV 206 >gi|302530357|ref|ZP_07282699.1| predicted protein [Streptomyces sp. AA4] gi|302439252|gb|EFL11068.1| predicted protein [Streptomyces sp. AA4] Length = 216 Score = 60.9 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 11/186 (5%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 + A + ++S DL G V+ + VA P+ G + +A+ G Sbjct: 41 PPSARGAPATSTVVSARDLPAGSVLRAADVRTVALPDSLRPSGAL------SAIDAAVGR 94 Query: 97 LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 L+ G+PI +L+ L + ++ + AV +++P VDVV Sbjct: 95 LLSGAARAGEPITDVRLLGNN---LPVTGEPDAVTVAVRLADA-AVAELLQPGQRVDVVA 150 Query: 157 VRSLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAK 215 + + S + V D + G L L A + A+ Sbjct: 151 GADTTNSASVLARGASVVTVRRSDDAGNRTLGPPQKGPLVLLALPREVATQVAASSLERP 210 Query: 216 LSLVLR 221 +++ LR Sbjct: 211 VTVTLR 216 >gi|325518464|gb|EGC98163.1| Flp pilus assembly protein CpaB [Burkholderia sp. TJI49] Length = 178 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 18/119 (15%) Query: 146 IKPNDHVDVVMVRSLSER--------KPTVTVVLSNIRVIAIDHNIDSDER--------- 188 ++P + VDV + + +++S +RV++ + Sbjct: 1 MRPGNFVDVFLNLKREGNSMLDGEVSQTQARLLMSRVRVLSFGDATPDRDSGNNTNGSNG 60 Query: 189 -VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI 246 A L + Q AL +S +L+L LR+ D + + D + + Sbjct: 61 QPSGVRIAVLAVPTAQVDALTLGESSGRLTLALRNPRDDELAVQTVAVRTDNKLSPSAL 119 >gi|262201376|ref|YP_003272584.1| SAF domain-containing protein [Gordonia bronchialis DSM 43247] gi|262084723|gb|ACY20691.1| SAF domain protein [Gordonia bronchialis DSM 43247] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 18/183 (9%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + VL++ +L G +T + V P + DG + E G V Sbjct: 53 QRTTGEQPVLVAVHELRPGQPLTAEDVTVVRVPSSLMPDGALVSPA------EGLGRTVA 106 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 + G+ + +L+ + L R + ++ + +++ D VDV+ Sbjct: 107 GRVRVGELVTDARLLTAHLPADLTGL-DDARLVPVHLADETLTS-LLRSGDVVDVL---- 160 Query: 160 LSERKPTVTVVLSNIRVI--AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 P V+ V A D L + A + AA A L+ Sbjct: 161 ----SPEAEVLARGAVVALPAGDAGSGGLTARSATRPVLLAMAEASAHRVAAAGLDAPLA 216 Query: 218 LVL 220 +VL Sbjct: 217 VVL 219 >gi|310288050|ref|YP_003939309.1| hypothetical protein BBIF_1530 [Bifidobacterium bifidum S17] gi|309251987|gb|ADO53735.1| conserved hypothetical protein [Bifidobacterium bifidum S17] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 28/191 (14%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 V+++ + G + +E P + +D + +A + G + Sbjct: 44 VTASIVTQPVVVAARLIPRGARIGAEDVEIRQMPVSDGWDTAL------DAANQAAGGIA 97 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-- 156 + I G P+ + R G+ + + + I D +D+V Sbjct: 98 QTDIAAGQPLFGAIVSRRPVA------EPGQTVIDVRV---TGTVDGIAAGDVMDLVSGT 148 Query: 157 --------VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208 S E + VL+ A + D+ + G+ T LTP +A +++ Sbjct: 149 PCDASTGTTSSRDESAGGRSCVLAR---SATAMDAAHDDAMTGGTLITFALTPDEAISII 205 Query: 209 AAQSVAKLSLV 219 AQ + + V Sbjct: 206 NAQELGPIMAV 216 >gi|118619767|ref|YP_908099.1| hypothetical protein MUL_4696 [Mycobacterium ulcerans Agy99] gi|118571877|gb|ABL06628.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length = 224 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 17/188 (9%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 V+++ DL+ G +T + + DG DV L G + Sbjct: 47 PSPDTNLCEVVVAARDLSPGTPLTIADVRLETRSAATLPDGPQTDV------GALVGATL 100 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV--- 155 P +G+ + +++ ++ G R + ++ SA+ +I+ D VDV+ Sbjct: 101 ASPTRRGEMLTDVRILGSRLAESTA--GPGARVVPLHLAD-SALIDLIRVGDVVDVLAAP 157 Query: 156 ---MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212 + P VV ++ V+ + + + + + L A + + Sbjct: 158 PTDAPAANQPSPPAAKVVATDAVVVLV--SAKQELQTHAHRVVLVALPARLANMVAGSAL 215 Query: 213 VAKLSLVL 220 L+L L Sbjct: 216 GQTLTLTL 223 >gi|307721766|ref|YP_003892906.1| SAF domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306979859|gb|ADN09894.1| SAF domain protein [Sulfurimonas autotrophica DSM 16294] Length = 292 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 81/229 (35%), Gaps = 41/229 (17%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 +MGI+ V + + + L H +T + I V ++ +L G ++ Sbjct: 5 NTRIIMGIMAGLVLFSSSVALLLYLKQSKHKETAQNN-------IEVFVAAKNLKKGDLL 57 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGG 120 ++ P+ + + D E+ RV I K +PIRLEK+ + Sbjct: 58 DAGSIKKAKLPKSYISFTPLTD-------SEIISHYARVNIYKDEPIRLEKISALKPVEK 110 Query: 121 LSSLLPKGKRAATMDISISSAVGG---------------MIKPNDHVDV--VMVRSLSER 163 + + K + ++ V +++ D+VD+ V+ S Sbjct: 111 IKQTVKKSETKVQTTLNKVQQVTEDTLSVSLSVFKNKNTLLRGGDYVDIASVIPSSTKTD 170 Query: 164 KPTVTVVLSNIRV---------IAIDHNIDSDERVLVGSTATLELTPMQ 203 + ++++ ++ + ++ ++++ T ++P Sbjct: 171 NFNTRYIALHVKINNFVSNGKTLSTPISYNAKKQIIRADTIVFLMSPKD 219 >gi|239620983|ref|ZP_04664014.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239516084|gb|EEQ55951.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 208 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 54/181 (29%), Gaps = 18/181 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + ++++ + G ++ ++ P ++++ G + ++ Sbjct: 46 AVVETEPMVVAARSIRRGDIILAADVQLADMPVSAA------GPSWTGNIEDVVGKVAQI 99 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I DPI + + P G + ++ S + D V +V Sbjct: 100 DIEAADPIS------THMARDAPVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGC 150 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + N V+ + + + + P A ++ Q + V+ Sbjct: 151 EGADC---TLAENATVMNVGKPDTTGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 207 Query: 221 R 221 R Sbjct: 208 R 208 >gi|320532996|ref|ZP_08033744.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 171 str. F0337] gi|320134787|gb|EFW26987.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 171 str. F0337] Length = 319 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 54/146 (36%), Gaps = 24/146 (16%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 +V V A ++A+ ++ P + ++ VL++ ++ G ++T + Sbjct: 58 LVVAVCLGTAVLVALSVLRPGPERGQQ-----------VLVASRAISAGALLTDQDVSTS 106 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 P ++ + + + G + + KG + +GG++ L + Sbjct: 107 TLPAGSLPQSPLT------STGQAVGSRAAISLEKGTVLTASM----TSGGMAQELGADE 156 Query: 130 RAATMDISISSAVGGMIKPNDHVDVV 155 R + + + +P VDV+ Sbjct: 157 RLVQVPVD---VGAELARPGARVDVI 179 >gi|311064926|ref|YP_003971652.1| hypothetical protein BBPR_1589 [Bifidobacterium bifidum PRL2010] gi|313140839|ref|ZP_07803032.1| cation transport ATPase [Bifidobacterium bifidum NCIMB 41171] gi|310867246|gb|ADP36615.1| Conserved hypothetical protein [Bifidobacterium bifidum PRL2010] gi|313133349|gb|EFR50966.1| cation transport ATPase [Bifidobacterium bifidum NCIMB 41171] Length = 219 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 28/191 (14%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 V+++ + G + +E P + +D + +A + G + Sbjct: 44 VTASIVTQPVVVAARLIPRGARIGAEDVEIRQMPVSDGWDTAL------DAANQAAGGIA 97 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-- 156 + I G P+ + R G+ + + + I D +D+V Sbjct: 98 QTDIAAGQPLFGAIVSRRPVA------EPGQTVIDVRV---TGTVDGIAAGDVMDLVSGT 148 Query: 157 --------VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208 S E + VL+ A + D+ + G+ T LTP +A +++ Sbjct: 149 PCDASAGTTSSRDESAGGRSCVLAR---SATAMDAAHDDAMTGGTLITFALTPDEAISII 205 Query: 209 AAQSVAKLSLV 219 AQ + + V Sbjct: 206 NAQELGPIMAV 216 >gi|300858083|ref|YP_003783066.1| hypothetical protein cpfrc_00665 [Corynebacterium pseudotuberculosis FRC41] gi|300685537|gb|ADK28459.1| putative secreted protein [Corynebacterium pseudotuberculosis FRC41] gi|302205806|gb|ADL10148.1| Putative secreted protein [Corynebacterium pseudotuberculosis C231] gi|302330365|gb|ADL20559.1| Conserved hypothetical protein [Corynebacterium pseudotuberculosis 1002] gi|308276041|gb|ADO25940.1| Conserved hypothetical protein [Corynebacterium pseudotuberculosis I19] Length = 250 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 74/237 (31%), Gaps = 48/237 (20%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + L+ + + + ++A +I MR ++ V + D+ +G V+ Sbjct: 14 RRSILLRRLFACLLCVLAAVITMR--------------QHHEPHTTVFQYRRDIHLGEVI 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQ-----------------------PNAMQELDGVLV 98 T L+ + P + + I P + + Sbjct: 60 TEKDLQAFSIPTHLLPNHAITQEEDIRFSYQRDNAHPHAAPSPSQKIFPLGTDKTTRRIA 119 Query: 99 RVPILKGDPIRLEKLVDRGNGG------LSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 +G + +S + + ++ + + ++ P D V Sbjct: 120 ISARPRGSIAVKTDFLPPPQDITSVIKNISMDRGEELNLVPVRLAQPN-LSQLLHPGDRV 178 Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209 D+V S + +VV + VI + + + + S A + +A+ + A Sbjct: 179 DLVASESTPDS---SSVVAAGGLVIFVPDPSSNKQNNIDYS-ALIAFPKPEAQLVAA 231 >gi|228982964|ref|ZP_04143223.1| hypothetical protein bthur0002_60970 [Bacillus thuringiensis Bt407] gi|228777147|gb|EEM25455.1| hypothetical protein bthur0002_60970 [Bacillus thuringiensis Bt407] Length = 292 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 76/235 (32%), Gaps = 29/235 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 L + A++ ++ + + ++K D+ V Sbjct: 19 NKKMLYAVGGLTTLAILMFGYQNFYLANQQEKV----------GTTIYVAKEDIQAKTEV 68 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 ++ V + + G++ D+ ++ G ++ +LKG+PI ++L + Sbjct: 69 NESMFTPVHIAKGGLLKGYVTDIS------QIKGAQLKGGLLKGEPIATQRLESKKENTD 122 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLS-NIRVIAID 180 L + I N V V++ SE+ T+ S I V A Sbjct: 123 EKL--------KIKIQSEFMPDIKNADNVKVFVLLTNKHSEQSEVQTLFASKKIEVSAQA 174 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 + L+LT + K AQS K+ + D + SSE Sbjct: 175 PEATQPSKQEYY----LQLTEDEVKQYYDAQSKGKIIISKMMSLDTSEISSEGGY 225 >gi|213693112|ref|YP_002323698.1| SAF domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|296454899|ref|YP_003662043.1| SAF domain-containing protein [Bifidobacterium longum subsp. longum JDM301] gi|213524573|gb|ACJ53320.1| SAF domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|296184331|gb|ADH01213.1| SAF domain protein [Bifidobacterium longum subsp. longum JDM301] Length = 208 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 57/181 (31%), Gaps = 18/181 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + ++++ + G ++ ++ A P + ++++ G + ++ Sbjct: 46 AVVETEPMVVAARSIRRGDIILAVDVQLAAMPVSAI------GPSWAGNIEDVVGKVAQI 99 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I DPI + + P G + ++ S + D V +V Sbjct: 100 DIEAADPIS------THMARDAPVTPTGTTVIEVRLASSV---DDVLAGDRVRLVSAVGC 150 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + N V+ + + + + + P A ++ Q + V+ Sbjct: 151 EGADC---TLAENATVMNVGKPDTTGALGVNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 207 Query: 221 R 221 R Sbjct: 208 R 208 >gi|28493099|ref|NP_787260.1| hypothetical protein TWT132 [Tropheryma whipplei str. Twist] gi|28476139|gb|AAO44229.1| unknown [Tropheryma whipplei str. Twist] Length = 254 Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 67/205 (32%), Gaps = 33/205 (16%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + I ++ + A G+ + + Q V ++ L++G Sbjct: 13 ILIGLALIAASFIGVFFVIKTNNSKSQ--------------VYVATRPLSIGDKFDAKQF 58 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 V D +I PNA + PI+ G+ + LV +L Sbjct: 59 SIVEANLGANLDKYITPGSLPNA-------VFNRPIMPGEFLPKSALVP--------VLD 103 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRVIAIDHNIDS 185 K A + I + + G +K D VDV + E ++ +RV + + Sbjct: 104 KDIVAVVLRI--AGDLPGDVKEGDLVDVWAAVKIKEEGFWQSELIAKTLRVSRVIVSTSQ 161 Query: 186 DERVLVGSTATLELTPMQAKALVAA 210 + + ++ + + L+ A Sbjct: 162 FD-PRGTTKVEVQASRDRLSYLLNA 185 >gi|291457156|ref|ZP_06596546.1| putative flagella basal body P-ring formation protein FlgA [Bifidobacterium breve DSM 20213] gi|291380991|gb|EFE88509.1| putative flagella basal body P-ring formation protein FlgA [Bifidobacterium breve DSM 20213] Length = 188 Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 71/208 (34%), Gaps = 28/208 (13%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 + A AG+ + + Q + V+I+ +A G +++ + P Sbjct: 9 IAAFCAGLAVLFGLGTVLAQ---------VQTAPVVIADRPIARGEIISSADIRVELLPV 59 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAAT 133 V + D E+ G++ ++ I DPI + L P G Sbjct: 60 STVGSSYATDAD------EITGLIAQIDIAVNDPIS------THMARDAPLPPTGTTVIE 107 Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGS 193 + ++ + + P D+V +V + V+ V+AI ++ Sbjct: 108 VRLA---SNPDDLLPGDNVQLVSAVGCAGEDC---VLAEEALVMAIG-EAEASSLGSNER 160 Query: 194 TATLELTPMQAKALVAAQSVAKLSLVLR 221 + + P A A++ Q + V+R Sbjct: 161 QVSFAMKPHAAAAVMELQQAGAIVAVMR 188 >gi|326333348|ref|ZP_08199595.1| putative Flp pilus assembly protein CpaB [Nocardioidaceae bacterium Broad-1] gi|325948992|gb|EGD41085.1| putative Flp pilus assembly protein CpaB [Nocardioidaceae bacterium Broad-1] Length = 219 Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 66/214 (30%), Gaps = 32/214 (14%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++A L + +P + ++ DL VG V+T L + +V Sbjct: 22 LLAFLLTASAVAIGFSATRPDPPDTSTMAVASRDLPVGTVLTAADLTDIETDPGSVPA-- 79 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 + + G + P+ +G+P+ +LV A + + + Sbjct: 80 -------DLAEAPLGERLAAPLRQGEPVTDVRLVGPELTEG----HPDLVAVPVRLPDAE 128 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-------------- 186 + G++ D VD+ + VT + ++++ + + Sbjct: 129 -MAGLLHVGDTVDLYATDPATAETARVTT---DTLILSLPQATEPNRDDSSAQGKTEGFG 184 Query: 187 -ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 G + + + + +A L+ Sbjct: 185 VTNTSAGRLVIVGVAASSVEDVTSAGVGGYLTFA 218 >gi|224283683|ref|ZP_03647005.1| hypothetical protein BbifN4_07627 [Bifidobacterium bifidum NCIMB 41171] Length = 213 Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 28/191 (14%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 V+++ + G + +E P + +D + +A + G + Sbjct: 38 VTASIVTQPVVVAARLIPRGARIGAEDVEIRQMPVSDGWDTAL------DAANQAAGGIA 91 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-- 156 + I G P+ + R G+ + + + I D +D+V Sbjct: 92 QTDIAAGQPLFGAIVSRRPVA------EPGQTVIDVRV---TGTVDGIAAGDVMDLVSGT 142 Query: 157 --------VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208 S E + VL+ A + D+ + G+ T LTP +A +++ Sbjct: 143 PCDASAGTTSSRDESAGGRSCVLAR---SATAMDAAHDDAMTGGTLITFALTPDEAISII 199 Query: 209 AAQSVAKLSLV 219 AQ + + V Sbjct: 200 NAQELGPIMAV 210 >gi|323343128|ref|ZP_08083359.1| hypothetical protein HMPREF0357_11540 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463192|gb|EFY08387.1| hypothetical protein HMPREF0357_11540 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 213 Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 68/181 (37%), Gaps = 11/181 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILK 104 V DL + + LE ++ PE+ + + I + + + G V+ + K Sbjct: 18 KVYRLNTDLTQREKIEDHHLEEISLPEKGINEFMIRN------KENVIGRYVKLGHTVYK 71 Query: 105 GDPIRLEKLVDRGNGG--LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + + LL + + + S+ + G +++ D+V++ + + Sbjct: 72 GQIVDRRDFEHFDDARGKPLLLLEPEEVLMSAEASMVNTGGNVLRAGDYVNLSVKLREFD 131 Query: 163 RKPTVTVVLSNIRVIAI-DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + +L +RV+ + D + E S + + + A + LS+V+ Sbjct: 132 GGSRIMPLLKGVRVVNVRDRDGHEIEAGKQPSVFSFAIPQKIESIIHKAIEIGDLSVVIC 191 Query: 222 S 222 + Sbjct: 192 N 192 >gi|123443820|ref|YP_001007791.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090781|emb|CAL13663.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 277 Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 57/169 (33%), Gaps = 6/169 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + + V + GI+ + Q + I + IS DL+ G + Sbjct: 1 MNRKFILLLSLLIVAVGIVGILINTDNGQKNTQDSTELNREQDTNIALAISTHDLSSGTI 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T N V + ++ E++ L++ +L G I + L + Sbjct: 61 LTANDYAIKNI---LVKESSELVKSNISSSAEINRHLLKENVLAGSYITKDMLAIPDSDE 117 Query: 121 L-SSLLPKGKRAATMDISISS-AVGGMIKPNDHVDV-VMVRSLSERKPT 166 +L KG ++ + + + + ++ +RK Sbjct: 118 FNHLVLKKGNVIYKFNLKKQDEYLLDSLNTGNRLSFQLITLETDKRKGM 166 >gi|159901123|ref|YP_001547370.1| hypothetical protein Haur_4611 [Herpetosiphon aurantiacus ATCC 23779] gi|159894162|gb|ABX07242.1| hypothetical protein Haur_4611 [Herpetosiphon aurantiacus ATCC 23779] Length = 363 Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 41/314 (13%), Positives = 94/314 (29%), Gaps = 68/314 (21%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEE------VITENPAKFINVLISKGD 54 M+ +G++++ V + A ++ T P + +L + D Sbjct: 1 MRQNPALGMILAVVVLIAALAGGYVYLTNQQKSQTSGDPSLLEPTNMPVPNVQILEAATD 60 Query: 55 LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD-GVLVRVPILKGDPIRLEKL 113 + ++T LE P E D + G + I G+ I+ Sbjct: 61 IEANKLITGADLEQYFNPLEVPPSDVTPDDVLYTEFYSVVQGKVTTTDIRGGERIKKSTF 120 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------- 163 + G + G+ + S +GG++ +++D++ SL + Sbjct: 121 RNAGIAEKLPIPVAGEESLKAYNMFVSDIGGIVAEGNNIDILGSYSLEQPYLRFTGIDKD 180 Query: 164 -----------KPTVTVVLSNIRVIAI---------DHNIDSDERVLVGS---------- 193 + V+ N+ V+ + + + Sbjct: 181 GIITLVDEKYLDISTHVLAQNVPVLKVVAPPLISPDGQQTGAAPPAAEPTIEVVVDGNPV 240 Query: 194 ----------------TATLELTPMQAKAL--VAAQSVAKLSLVLRSIADLN---PSSSE 232 + LT QA+ L A++ +KL++V+R D + ++ Sbjct: 241 EPQATPEPIFTEGSQWQIVVALTAQQAELLEYTKAKTGSKLNVVVRRADDQDDRIATTGV 300 Query: 233 DSDVWDVQEEGKEI 246 D+ ++ Sbjct: 301 TMDLLMRLYGVPQV 314 >gi|218680528|ref|ZP_03528425.1| hypothetical protein RetlC8_17240 [Rhizobium etli CIAT 894] Length = 166 Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGST----ATLELTPMQAKALVAA--QSVAKLS 217 + L N++V+A+ ++ V ++ T+E+TP +A+ L+ A QS L+ Sbjct: 85 RVVTRTFLQNVKVLAVGAATTAEGAVTKANSTYNNVTVEVTPAEAEMLIFALGQSNGSLN 144 Query: 218 LVLRSIADLNPSS 230 LVLR+ AD Sbjct: 145 LVLRNPADNTVED 157 >gi|283782738|ref|YP_003373492.1| hypothetical protein HMPREF0424_0231 [Gardnerella vaginalis 409-05] gi|283441123|gb|ADB13589.1| hypothetical protein HMPREF0424_0231 [Gardnerella vaginalis 409-05] Length = 284 Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 86/250 (34%), Gaps = 65/250 (26%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 R V + L AG++A+ +VS + + ++K ++ G V+ Sbjct: 47 RRQRAFVRKIIIVLCAGMMALLVVSTIIDSQ---------ETQVIAVAKHNIQKGSRVSV 97 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 N + +V P+ VF+ + + NA ++ I KG PI L Sbjct: 98 NDIAYVRVPKHKVFNQALSNNISANAS-----IIATCEIRKGMPILQTLLSKIP------ 146 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT--------------- 168 +P+G + T+ ++ + + P + +D+ + + + + + + Sbjct: 147 RIPEGFTSITIHLASADHT---LLPGEKIDLAFSKPVQDEEISNSKNAESHNNEKSKSST 203 Query: 169 -------------------------VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203 V+ N+ V+ I + + +T TL + Sbjct: 204 IENNDKNKNQDIEENNIAEIDERYVSVVHNVTVMQITQSTQVSQNQQ--NTTTLAMPAAD 261 Query: 204 AKALVAAQSV 213 A L+ AQS Sbjct: 262 ALRLLQAQSA 271 >gi|208701981|ref|YP_002267168.1| SAF domain protein, putative [Bacillus cereus H3081.97] gi|228943661|ref|ZP_04106082.1| hypothetical protein bthur0008_62160 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228956198|ref|ZP_04118081.1| hypothetical protein bthur0006_54880 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|332287970|ref|YP_004169156.1| hypothetical protein pBMB0558_00225 [Bacillus thuringiensis CT43] gi|208658273|gb|ACI30639.1| SAF domain protein, putative [Bacillus cereus H3081.97] gi|228803515|gb|EEM50251.1| hypothetical protein bthur0006_54880 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816013|gb|EEM62217.1| hypothetical protein bthur0008_62160 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|315273042|gb|ADU03111.1| hypothetical protein pBMB0558_00225 [Bacillus thuringiensis serovar chinensis CT-43] gi|326943372|gb|AEA19267.1| SAF domain protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 249 Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 45/206 (21%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 E++ ++ +V+++K D+ +T + ++ V+ ++ + D +P +Q L Sbjct: 27 ELVFKDKINTTDVIVAKQDIKFKSEITKDDIKVVSVRKDI----AVHDALKPEDVQLLLN 82 Query: 96 VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + I KG I KLVD N L KG+ A + S AV G ++ D Sbjct: 83 KHASIDIKKGTQIY-SKLVDTYN--LIPNEEKGEFIAPIPDSWLFAVPGSLRKTYIADFY 139 Query: 156 MVRSLSERKPTV-------------------------------TVVLSNIRVIAID---- 180 +V + +L N+RV ++ Sbjct: 140 LVPDKDQAVIRSLVQDSKGNEGKNDKEPLKTDEDSDVEVMRLAKPILQNVRVASVKDNGN 199 Query: 181 ---HNIDSDERVLVGSTATLELTPMQ 203 D++ GS + +E+ Q Sbjct: 200 KEVTETQEDQQNATGSVSNIEVIADQ 225 >gi|218290612|ref|ZP_03494714.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218239396|gb|EED06593.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 267 Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 71/227 (31%), Gaps = 22/227 (9%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 I + ++ E + + ++ DL VG V+ P + P + G Sbjct: 20 IAGLAVLGLVTAFVIERVATHKVPMAMAFVAAHDLTVGEVIGPKDVTRTKVPVATLPPGA 79 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISIS 139 + G +V P+ +G + L G G+ L RA + +S Sbjct: 80 MTVSP--------VGKMVTSPVYQGQVLVGGDLGRMGGVNGVMRLYGTQTRAYPLTLSTQ 131 Query: 140 SAVGGMIKPNDHVDVVMVRSLSER-KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLE 198 S + VDV+ +V + ++A+ + + Sbjct: 132 SVPMNDVSVGQAVDVIAQMPSPNGAGNVTKLVAQDAPILAVSPAQN-----------VIL 180 Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245 + ++AL A + KL + L P+ + + + G Sbjct: 181 VGVTDSEALQMANAT-KLYVALSPETPWVPAETASNSTANSAASGST 226 >gi|229492883|ref|ZP_04386679.1| SAF domain protein [Rhodococcus erythropolis SK121] gi|229320157|gb|EEN85982.1| SAF domain protein [Rhodococcus erythropolis SK121] Length = 234 Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 28/218 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + V +VA I + VS +VL+ D+ G V+ Sbjct: 40 RRRPIYLAVGIALVVVAVIGMLAAVSAMRA------------TTDVLVLARDVQQGQVIE 87 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L + + G+ + G + + D+ Sbjct: 88 SKDLTVKTVNVD-----ADLGALSAGERGRVIGMSAGTRLPAGSVLMPAAVTDQ------ 136 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 + +G + + I P D + VV + P V + +V ++ Sbjct: 137 VVPGEGLTMVGITVGYPHLPSEAIVPGDMIRVVDTPREGDDPPVTGPVNTKAQVYSMTVI 196 Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ++ E +T L + +A + A + ++S+VL Sbjct: 197 AEAGE-----TTLNLLVPEAEANWVAARAATKRVSIVL 229 >gi|256826164|ref|YP_003150124.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547] gi|256689557|gb|ACV07359.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547] Length = 218 Score = 59.4 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 28/192 (14%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 P VL++ ++A G +T L + PE +++EL G V Sbjct: 49 PAPPVTTEVLVADAEIAPGTTLTAEHLRTIELPEGAAAWDA-------GSVEELTGRTVT 101 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 +P+ GDP+ ++ G +P G+ + + + P V +V Sbjct: 102 IPLAPGDPVTPRSVLPAGE-----QIPGGRELIFLPVLDPPVLAAA-HPGSTVRLV---- 151 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA-----QSVA 214 + T + V + L G LELTP Q+ A+ +A Sbjct: 152 ---DRTTGETLADRATVRSTAPIDPDAVDSLGGLW--LELTPAQSDAVASAGVQTGSQEG 206 Query: 215 KLSLVL-RSIAD 225 +++ L RS + Sbjct: 207 AVAVSLVRSPQE 218 >gi|28572304|ref|NP_789084.1| membrane/secreted protein [Tropheryma whipplei TW08/27] gi|28410435|emb|CAD66821.1| putative membrane/secreted protein [Tropheryma whipplei TW08/27] Length = 248 Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 67/205 (32%), Gaps = 33/205 (16%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + I ++ + A G+ + + Q V ++ L++G Sbjct: 13 ILIGLALIAASFIGVFFVIKTNNSKSQ--------------VYVATRPLSIGDKFDAKQF 58 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 V D +I PNA + PI+ G+ + LV ++ Sbjct: 59 SIVEANLGANLDKYITPGSLPNA-------VFNRPIMPGEFLPKSALVP--------VID 103 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRVIAIDHNIDS 185 K A + I + + G +K D VDV + E ++ +RV + + Sbjct: 104 KDIVAVVLRI--AGDLPGDVKEGDLVDVWAAVKIKEEGFWQSELIAKTLRVSRVIVSTSQ 161 Query: 186 DERVLVGSTATLELTPMQAKALVAA 210 + + ++ + + L+ A Sbjct: 162 FD-PRGTTKVEVQASRDRLSYLLNA 185 >gi|307256575|ref|ZP_07538356.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864985|gb|EFM96887.1| Flp operon protein C [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 259 Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 10/191 (5%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 + + + + L+ V E + K I + DL G ++ P Sbjct: 1 MFSVSAAYLCCLLNEGTTTENVGTTTTSEESSNSPVTEKVITTVTLNRDLEKGTLIQPED 60 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIRLEKLVDRGNGG-- 120 D+ + L G LV + G + ++ + Sbjct: 61 YTLSELTVAETSPLVDSDLKALLDAEPNHSLQGFLVTENLKMGSLLTPNLIITPEDPRFI 120 Query: 121 LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL----SERKPTVTVVLSNIR 175 L SL P + A + + + ++ D V V V+ + ++ + N++ Sbjct: 121 LLSLEPSQEVAYRIYVQDAEQYILDSVRGGDLVSVYSVQQDLAHPEREQNSLVKIADNLK 180 Query: 176 VIAIDHNIDSD 186 V+ + + Sbjct: 181 VLQVKSFTQEE 191 >gi|317483025|ref|ZP_07942027.1| SAF domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316915526|gb|EFV36946.1| SAF domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 208 Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 53/181 (29%), Gaps = 18/181 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + ++++ + G ++ ++ P ++++ G + ++ Sbjct: 46 AVVETEPMVVAARSIRRGDIILAADVQLADMPVSAA------GPSWTGNIEDVVGKVAQI 99 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I DPI + + P G + ++ S + D V +V Sbjct: 100 DIEAADPIS------THMARDAPVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGC 150 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + N V+ + + + P A ++ Q + V+ Sbjct: 151 EGADC---TLAENATVMNVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 207 Query: 221 R 221 R Sbjct: 208 R 208 >gi|329945240|ref|ZP_08293071.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 170 str. F0386] gi|328529283|gb|EGF56204.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 170 str. F0386] Length = 261 Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 45/134 (33%), Gaps = 13/134 (9%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 + + + V+ P + VL++ ++ G ++T + P ++ + Sbjct: 1 MVAVCLGTAVLVALSVLRPGPEQGRQVLVAARQVSAGTLITEQDVTTSRLPASSLPQSGL 60 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA 141 + +++ G + + G + +G + L +R + + Sbjct: 61 A------SSEQVVGTRAAITLEPGTVLTSSM----TSGHEAEQLGPDERLVQVPVD---V 107 Query: 142 VGGMIKPNDHVDVV 155 + P VDV+ Sbjct: 108 GAELAHPGTRVDVI 121 >gi|298253092|ref|ZP_06976884.1| hypothetical protein GV51_0271 [Gardnerella vaginalis 5-1] gi|297532487|gb|EFH71373.1| hypothetical protein GV51_0271 [Gardnerella vaginalis 5-1] Length = 284 Score = 58.6 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 86/250 (34%), Gaps = 65/250 (26%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 R V + L AG++A+ +VS + + ++K ++ G V+ Sbjct: 47 RRQRAFVRKIIIVLCAGMMALLVVSTIIDSQ---------ETQVIAVAKHNIQQGSRVSV 97 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 N + +V P+ VF+ + + NA ++ I KG PI L Sbjct: 98 NDIAYVRVPKHKVFNQALSNNISANAS-----IIATCEIRKGMPILQTLLSKIP------ 146 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT--------------- 168 +P+G + T+ ++ + + P + +D+ + + + + + + Sbjct: 147 RIPEGFTSITIHLASADHT---LLPGEKIDLAFSKPVQDEEISNSKNAESHNNEKSKSST 203 Query: 169 -------------------------VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203 V+ N+ V+ I + + +T TL + Sbjct: 204 IENNDKNKNQDIEENNIAEIDERYVSVVHNVTVMQITQSTQVSQNQQ--NTTTLAMPAAD 261 Query: 204 AKALVAAQSV 213 A L+ AQS Sbjct: 262 ALRLLQAQSA 271 >gi|219848639|ref|YP_002463072.1| SAF domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219542898|gb|ACL24636.1| SAF domain protein [Chloroflexus aggregans DSM 9485] Length = 265 Score = 58.6 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 33/239 (13%), Positives = 68/239 (28%), Gaps = 53/239 (22%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + L I++ + A + + + V+I D+ G + Sbjct: 15 RSNPLPAILIGLGLIVTAVFTVIAFLEAGQSE-------------PVVILARDVPYGHQL 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + L V P + + ++ G + D ++ + + Sbjct: 62 SADDLTVVLLPRHRP-----IQLTGIASPAQVIGQYAARNLSANDLLQPSMVTAQSPAQP 116 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------------ 163 + + + S+ G + +D V++ Sbjct: 117 VYPNGETLTPGMVPVPFSTETIGPLTHHDRVNIGFNDPSGAADVCDRARSVAEGRTPTVL 176 Query: 164 --------KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 +P +LS RV+ ID A LELTP Q+ A+ A Q+ Sbjct: 177 PPDTPLQPRPYACRLLSGARVLYIDSEAQ---------VAYLELTPYQSHAIWALQAAG 226 >gi|111026111|ref|YP_708394.1| hypothetical protein RHA1_ro10043 [Rhodococcus jostii RHA1] gi|110824954|gb|ABH00236.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 235 Score = 58.6 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 70/218 (32%), Gaps = 28/218 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + + +VA I + V+ +VL+ ++ G + Sbjct: 41 RRRPIYLAIGVALVVVAVIGMLTAVNAMRA------------TTDVLVLTNEVQQGETIE 88 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L + + + + G+ + G + + D+ G Sbjct: 89 SKDLAAKSVNVD-----ADLGALPASERGRVVGMSASTRLPAGTVLLPSAITDQVVPG-- 141 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 +G + +S S I P D V VV + P + + +V + Sbjct: 142 ----EGLTMVGITVSYSHLPSEPIVPGDMVRVVDTPRDQDDPPVQGPINTKAQVYSTKEI 197 Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ++ E +T L + +A + A + ++++VL Sbjct: 198 PEAGE-----TTLNLLVPEAEANWVAARGATKRVAIVL 230 >gi|226349288|ref|YP_002776402.1| hypothetical membrane protein [Rhodococcus opacus B4] gi|226245203|dbj|BAH55550.1| hypothetical membrane protein [Rhodococcus opacus B4] Length = 235 Score = 58.6 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 70/218 (32%), Gaps = 28/218 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + + +VA I + V+ +VL+ ++ G + Sbjct: 41 RRRPIYLAIGVALVVVAVIGMLTAVNAMRA------------TTDVLVLTNEVQQGETIE 88 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L + + + + G+ + G + + D+ Sbjct: 89 SKDLAAKSVNVD-----ADLGALPASERGRVVGMSASTRLPAGTVLLPSAITDQ------ 137 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 + +G + +S S I P D V VV + P + + +V + Sbjct: 138 VVPGEGLTMVGITVSYSHLPSEPIVPGDMVRVVDTPRDQDDPPVQGPINTKAQVYSTKEI 197 Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ++ E +T L + +A + A + ++++VL Sbjct: 198 PEAGE-----TTLNLLVPEAEANWVAARGATKRVAIVL 230 >gi|227832659|ref|YP_002834366.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975] gi|262182856|ref|ZP_06042277.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975] gi|227453675|gb|ACP32428.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975] Length = 214 Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 54/170 (31%), Gaps = 11/170 (6%) Query: 20 GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79 I+ + V + + V++ D+A G + + + P + Sbjct: 16 VILRRVTAAVLLVAAAASALASTREQPRVVVMARDVAAGETLALSDVSVARVPSSALPAT 75 Query: 80 FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139 + + + G ++ G+ + +L+ + ++ + + ++ Sbjct: 76 AL-----GSNPDDAVGRVLVAAASTGEILTSTRLL--SSDLIADFGMEDGHLIPLTLAEP 128 Query: 140 SAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAIDHNIDSD 186 + + D V++V S+ + + RV+++ D Sbjct: 129 E-IARNLHHGDTVNIVSTDDGSDDISAPTRGSTIARGARVVSVGTGEDDA 177 >gi|297242988|ref|ZP_06926926.1| hypothetical protein GVAMD_1000 [Gardnerella vaginalis AMD] gi|296889199|gb|EFH27933.1| hypothetical protein GVAMD_1000 [Gardnerella vaginalis AMD] Length = 259 Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 87/250 (34%), Gaps = 65/250 (26%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 R V + L AG++A+ +VS + + ++K ++ G V+ Sbjct: 22 RRQRAFVRKIIIVLCAGMMALLVVSTIIDSQ---------ETQVIAVAKHNIQQGSRVSV 72 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 N + +V P+ VF+ + + NA ++ I KG PI L Sbjct: 73 NDIAYVRVPKHKVFNQALSNNISANAS-----IVATCEIRKGMPILQTLLSKIP------ 121 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT--------------- 168 +PKG + T+ ++ + + P + +D+ + + + + + + Sbjct: 122 RIPKGFTSITIHLASADHT---LLPGEKIDLAFSKPVQDEEISNSQNAEIHNSEKSKSNT 178 Query: 169 -------------------------VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203 V+ N+ V+ I + + + +T TL + Sbjct: 179 VTNNDKNKNHDIEENNIAEIDERYVSVVHNVMVMQITQSTQASQNQQ--NTTTLAMPAAD 236 Query: 204 AKALVAAQSV 213 A L+ AQS Sbjct: 237 ALRLLQAQSA 246 >gi|325067747|ref|ZP_08126420.1| hypothetical protein AoriK_07996 [Actinomyces oris K20] Length = 250 Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 13/128 (10%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 V+ P + VL++ ++ G V+T + P + + + + Sbjct: 2 ALSVLRPGPERGQQVLVASRSISAGAVLTEQDVSISNLPAGALPQSPLT------SAGQA 55 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G + + KG + +G L+ L +R + + + +P VD Sbjct: 56 VGSRAAISLEKGTVLTASM----TSGYLAQQLGDDERLVQVPVD---VGAELARPGARVD 108 Query: 154 VVMVRSLS 161 ++ S Sbjct: 109 IIGQASED 116 >gi|187251720|ref|YP_001876202.1| SAF domain-containing protein [Elusimicrobium minutum Pei191] gi|186971880|gb|ACC98865.1| SAF domain protein [Elusimicrobium minutum Pei191] Length = 215 Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 18/188 (9%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + I V ++ D+ V+T + P D F + ++G + V I Sbjct: 20 EPIKVFVALHDIPALSVITGQDIATA-VPAIAERDAFFSEQDIAL----IEGAVALVNIP 74 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND--HVDVVMVRS-- 159 KG I+ L + SS L KG + + I +A + VD+++ Sbjct: 75 KGTQIKKNSLKLKDKKPSSSELNKGWGYYILPVDIQTADMVLSNGGSRERVDLIVRTYRE 134 Query: 160 -LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV-AKLS 217 +P V +L NI V + + L P A+ L + A + Sbjct: 135 IGDLNEPVVFTLLQNIEVKDVL-------ENNGAYSLLLITDPADAQLLFLTEKKDAFVK 187 Query: 218 LVLRSIAD 225 ++LR+ D Sbjct: 188 VLLRAETD 195 >gi|320459290|dbj|BAJ69911.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 172 Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 57/181 (31%), Gaps = 18/181 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + ++++ + G ++ ++ A P + ++++ G + ++ Sbjct: 10 AVVETEPMVVAARSIRRGDIILAVDVQLAAMPVSAI------GPSWAGNIEDVVGKVAQI 63 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I DPI + + P G + ++ S + D V +V Sbjct: 64 DIEAADPIS------THMARDAPVTPTGTTVIEVRLASSV---DDVLAGDRVRLVSAVGC 114 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + N V+ + + + + + P A ++ Q + V+ Sbjct: 115 EGADC---TLAENATVMNVGKPDTTGALGVNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 171 Query: 221 R 221 R Sbjct: 172 R 172 >gi|22127357|ref|NP_670780.1| hypothetical protein y3483 [Yersinia pestis KIM 10] gi|45442769|ref|NP_994308.1| hypothetical protein YP_3008 [Yersinia pestis biovar Microtus str. 91001] gi|108809089|ref|YP_653005.1| hypothetical protein YPA_3098 [Yersinia pestis Antiqua] gi|108810717|ref|YP_646484.1| hypothetical protein YPN_0552 [Yersinia pestis Nepal516] gi|145597788|ref|YP_001161864.1| hypothetical protein YPDSF_0478 [Yersinia pestis Pestoides F] gi|150260278|ref|ZP_01917006.1| putative membrane protein [Yersinia pestis CA88-4125] gi|165924894|ref|ZP_02220726.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939030|ref|ZP_02227582.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. IP275] gi|166008960|ref|ZP_02229858.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166211995|ref|ZP_02238030.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399463|ref|ZP_02304987.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418776|ref|ZP_02310529.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425125|ref|ZP_02316878.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466373|ref|ZP_02331077.1| membrane protein [Yersinia pestis FV-1] gi|218927883|ref|YP_002345758.1| hypothetical protein YPO0694 [Yersinia pestis CO92] gi|229837376|ref|ZP_04457539.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis Pestoides A] gi|229840588|ref|ZP_04460747.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842862|ref|ZP_04463014.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis biovar Orientalis str. India 195] gi|229900912|ref|ZP_04516036.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis Nepal516] gi|294502760|ref|YP_003566822.1| hypothetical protein YPZ3_0650 [Yersinia pestis Z176003] gi|21960441|gb|AAM87031.1|AE013951_6 hypothetical [Yersinia pestis KIM 10] gi|45437635|gb|AAS63185.1| putative membrane protein [Yersinia pestis biovar Microtus str. 91001] gi|108774365|gb|ABG16884.1| membrane protein [Yersinia pestis Nepal516] gi|108781002|gb|ABG15060.1| putative membrane protein [Yersinia pestis Antiqua] gi|115346494|emb|CAL19369.1| putative membrane protein [Yersinia pestis CO92] gi|145209484|gb|ABP38891.1| membrane protein [Yersinia pestis Pestoides F] gi|149289686|gb|EDM39763.1| putative membrane protein [Yersinia pestis CA88-4125] gi|165912986|gb|EDR31611.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923094|gb|EDR40245.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992299|gb|EDR44600.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166206741|gb|EDR51221.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166962770|gb|EDR58791.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051967|gb|EDR63375.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055888|gb|EDR65669.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682251|gb|EEO78343.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis Nepal516] gi|229690129|gb|EEO82186.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis biovar Orientalis str. India 195] gi|229696954|gb|EEO87001.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705499|gb|EEO91509.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis Pestoides A] gi|262360792|gb|ACY57513.1| hypothetical protein YPD4_0604 [Yersinia pestis D106004] gi|262364737|gb|ACY61294.1| hypothetical protein YPD8_0604 [Yersinia pestis D182038] gi|294353219|gb|ADE63560.1| hypothetical protein YPZ3_0650 [Yersinia pestis Z176003] gi|320016743|gb|ADW00315.1| Flp pilus assembly protein RcpC/CpaB [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 288 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 21/199 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS--KGDLAVG 58 M L+ + V ++GI+ ++P E + K N++++ + DL G Sbjct: 1 MNRKFLILFSLLIVAIGISGIL----LNPDKEIPELLTQTEKRKERNIVLAQTRHDLTAG 56 Query: 59 MVVTPNILEWVAFPEENVFD------------GFIDDVHQPNAMQELDGVLVRVPILKGD 106 +++ + D +LDG L++ IL G Sbjct: 57 TLISKEDYSLQNITVDESSDLVKNDLSHGHRIDGDSIADDRTHDHKLDGHLLKNNILAGS 116 Query: 107 PIRLEKLVDRGNGGLSSL-LPKGKRAATMDISISS-AVGGMIKPNDHVDV-VMVRSLSER 163 I E L+ + S L L G+ I+ + + + P D + ++ ++ Sbjct: 117 YIIDEMLISPDSREFSRLNLKHGEIIYKFYITEKNEYLLNTLNPGDFLSFQLLTLETNKT 176 Query: 164 KPTVTVVLSNIRVIAIDHN 182 K + + + ++ Sbjct: 177 KGMENGIAIDSKSMSSKQR 195 >gi|162421130|ref|YP_001604875.1| hypothetical protein YpAngola_A0255 [Yersinia pestis Angola] gi|162353945|gb|ABX87893.1| conserved hypothetical protein [Yersinia pestis Angola] Length = 288 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 21/199 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS--KGDLAVG 58 M L+ + V ++GI+ ++P E + K N++++ + DL G Sbjct: 1 MNRKFLILFSLLIVAIGISGIL----LNPDKEIPELLTQTEKRKERNIVLAQTRHDLTAG 56 Query: 59 MVVTPNILEWVAFPEENVFD------------GFIDDVHQPNAMQELDGVLVRVPILKGD 106 +++ + D +LDG L++ IL G Sbjct: 57 TLISKEDYSLQNITVDESNDLVKNDLSHGHRIDGDSIADDRTHDHKLDGHLLKNNILAGS 116 Query: 107 PIRLEKLVDRGNGGLSSL-LPKGKRAATMDISISS-AVGGMIKPNDHVDV-VMVRSLSER 163 I E L+ + S L L G+ I+ + + + P D + ++ ++ Sbjct: 117 YIIDEMLISPDSREFSRLNLKHGEIIYKFYITEKNEYLLNTLNPGDFLSFQLLTLETNKT 176 Query: 164 KPTVTVVLSNIRVIAIDHN 182 K + + + ++ Sbjct: 177 KGMENGIAIDSKSMSSKQR 195 >gi|291575287|gb|ADE10212.1| hypothetical protein [Actinoplanes liguriensis] Length = 266 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 63/235 (26%), Gaps = 36/235 (15%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGM---VVTPNILEWVA-FPEENVFDGFIDDVHQP 87 ++ + + + +L++ + G + L P V G + Sbjct: 26 ARSADRRALSGREGTWILVAGQHIPSGTSGAEIRARGLTERLLVPTVTVPAGALTTWDSA 85 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 L G L +L G + +P+ A ++ ++++ V G I Sbjct: 86 LDPLRLGGDLQPRQLLMRTLFVPASPAPSHTGRIP--VPRRSLAVSVALNVAPQVAGNIT 143 Query: 148 PNDHVDVVMVRSLS-------ERKPTVTVVLSNIRVIAIDHNIDSDE------------- 187 P D V V E P ++L RVI I Sbjct: 144 PGDQVAVYYTYQAKVLMAEDHETIPMTELLLPKARVITIGEAEPGQAPVTPSPSPTPGPS 203 Query: 188 ----------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 + + TL + A LV A L L L + Sbjct: 204 ASAGDSTAAVKEIQRYVVTLAVGDTDALRLVHAAQSGSLYLALLGPNATASTGPA 258 >gi|254823442|ref|ZP_05228443.1| hypothetical protein MintA_26166 [Mycobacterium intracellulare ATCC 13950] Length = 216 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 65/191 (34%), Gaps = 13/191 (6%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 + + + V+++ DL G +T + V DG DV + Sbjct: 33 ATLRSNPAGDYTQVVVADHDLRPGNALTAADVRIEKRLASTVPDGARADV------GAVV 86 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLS--SLLPKGKRAATMDISISSAVGGMIKPNDHV 152 G + P +G+ + +L+ + S G R + ++ A+ +++ D V Sbjct: 87 GSTLAGPARRGEVLTDVRLLGNRLAEAAIGSKAGPGARIVPLHLAD-GALIDLVRAGDVV 145 Query: 153 DVV---MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209 DV+ + VV ++ V+ + + + + L A + Sbjct: 146 DVLAAPATGTPETAHAAPRVVATDAVVVLV-SAKEKLQSADADRVVLVALPARVANTVAG 204 Query: 210 AQSVAKLSLVL 220 + ++L L Sbjct: 205 SALGQTVTLTL 215 >gi|120405786|ref|YP_955615.1| SAF domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119958604|gb|ABM15609.1| SAF domain [Mycobacterium vanbaalenii PYR-1] Length = 217 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 70/184 (38%), Gaps = 24/184 (13%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 VV+G ++AG+ A R + A+ +V+++ DL+ G +T + Sbjct: 30 VVAGALVVLAGVAAWRG-------------DPQAEQSDVVVTLHDLSPGAEITAADVRVE 76 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 V +G DV + G + P +G+ + +L+ ++ Sbjct: 77 TRSASTVPEGAHSDVD------AVVGATLAGPTRRGEIVTDVRLLSSRLAESAA--GPDA 128 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189 R + ++ + A+ +++ D VD+V ++ ++ ++ V+ + + Sbjct: 129 RIVPIPLADA-ALTDLVRAGDVVDIVA--GPADEAGAARLIATDAVVVLVSAEQNGVGSR 185 Query: 190 LVGS 193 G Sbjct: 186 SGGR 189 >gi|167036494|ref|YP_001664072.1| SAF domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114922|ref|YP_004185081.1| SAF domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855328|gb|ABY93736.1| SAF domain [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928013|gb|ADV78698.1| SAF domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 180 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 66/187 (35%), Gaps = 34/187 (18%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + ++ + VFA + + K V++ + D+ G V Sbjct: 1 MSRIIKIALITAVVFAAFMFVFMQNI----------------QKTEKVVVVEKDIPAGTV 44 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++ + ++ P V + ++ ++ G +V+ ++GD I +E L + Sbjct: 45 ISQDAVKVTDVPASVVRPNY------AKSLADVIGKVVKEGRVQGDFIPVEILTSQDEK- 97 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 LL G T+ I ++ D V ++ + VL +VI++ Sbjct: 98 ---LLEAGHVIMTIQIDKVE--AKTLQSGDTVSFIVFDQTGSK------VLEGFKVISVF 146 Query: 181 HNIDSDE 187 + D Sbjct: 147 SDSDKAN 153 >gi|227546443|ref|ZP_03976492.1| cation transport ATPase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|322689956|ref|YP_004209690.1| hypothetical protein BLIF_1777 [Bifidobacterium longum subsp. infantis 157F] gi|227213100|gb|EEI80979.1| cation transport ATPase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|320461292|dbj|BAJ71912.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 189 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 54/181 (29%), Gaps = 18/181 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + ++++ + G ++ ++ P ++++ G + ++ Sbjct: 27 AVVETEPMVVAARSIRRGDIILAADVQLADMPVSAA------GPSWTGNIEDVVGKVAQI 80 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I DPI + + P G + ++ S + D V +V Sbjct: 81 DIEAADPIS------THMARDAPVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGC 131 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + N V+ + + + + P A ++ Q + V+ Sbjct: 132 EGADC---TLAENATVMNVGKPDATGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 188 Query: 221 R 221 R Sbjct: 189 R 189 >gi|220930503|ref|YP_002507412.1| hypothetical protein Ccel_3141 [Clostridium cellulolyticum H10] gi|220000831|gb|ACL77432.1| hypothetical protein Ccel_3141 [Clostridium cellulolyticum H10] Length = 226 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 62/170 (36%), Gaps = 24/170 (14%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M+ I ++ +F AL+A + + + +++L+++ D+ G Sbjct: 1 MRQKLKGVIGIAIMFTALIATYLWVTYGQT------------EIQSVSLLVAQKDIPKGT 48 Query: 60 VVT--PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 V+ + + E+ G I PN + LDG + I ++V + Sbjct: 49 VINNAQDYFKSQKISLESAVAGAIK----PNQINLLDGRIAEQFIPAN-----GQIVRQT 99 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV 167 S +L + + + + ++ I+ D + + + S + K Sbjct: 100 FSNNSLILKENEFVFKLPPTWVYSIPSSIRRGDKISIYEIDSKIDNKLNT 149 >gi|46190327|ref|ZP_00121647.2| COG2217: Cation transport ATPase [Bifidobacterium longum DJO10A] gi|189440534|ref|YP_001955615.1| Flagellar basal body P-ring biosynthesis protein [Bifidobacterium longum DJO10A] gi|189428969|gb|ACD99117.1| Flagellar basal body P-ring biosynthesis protein [Bifidobacterium longum DJO10A] Length = 189 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 54/181 (29%), Gaps = 18/181 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + ++++ + G ++ ++ P ++++ G + ++ Sbjct: 27 AVVETEPMVVAARSIRRGDIILAADVQLADMPVSAA------GPSWTGNIEDVVGKVAQI 80 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I DPI + + P G + ++ S + D V +V Sbjct: 81 DIEAADPIS------THMARDAPVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGC 131 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + N V+ + + + + P A ++ Q + V+ Sbjct: 132 EGADC---TLAENATVMNVGKPDATGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 188 Query: 221 R 221 R Sbjct: 189 R 189 >gi|33867071|ref|NP_898629.1| hypothetical protein PBD2.014 [Rhodococcus erythropolis] gi|33668905|gb|AAP73899.1| conserved hypothetical protein [Rhodococcus erythropolis] Length = 235 Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 28/218 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + +V I A+ LV+ + NVL+ D+A G +T Sbjct: 41 RRRPVFLAAGIALVVVFVIGAVALVNGMR------------QVTNVLVVSQDIAQGQQIT 88 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L + G + VPI G + + + Sbjct: 89 SQDLTTKQVNAH-----AGIASVAIEDKATVVGQVAAVPIPSGTVLNPNAVTS------A 137 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 + KG + +S + ++ D V +V + P + S +V++ Sbjct: 138 VIPTKGLTLVGVTVSYAKLPAEPLRAGDMVRIVDTPRDQDDSPVQGPITSKAQVVSTTLI 197 Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + E +T + + +A + A + ++++VL Sbjct: 198 EATQE-----TTVDVLVQADEASWVSARAATRRVAIVL 230 >gi|283778976|ref|YP_003369731.1| hypothetical protein Psta_1193 [Pirellula staleyi DSM 6068] gi|283437429|gb|ADB15871.1| hypothetical protein Psta_1193 [Pirellula staleyi DSM 6068] Length = 799 Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 14/164 (8%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS----KGDLAVGMVVTPNILEWVAF 71 AL G+ M + + ++ K + +T Sbjct: 302 ALHKGLSVMAVAQSGQAAKGGSDDSEAPAEQKLAVAFPLVKRTIPAFQRITEQDFID--- 358 Query: 72 PEENVFDGFIDDVHQ-----PNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLL 125 P + D L G + I G I +L ++G GG+ S++ Sbjct: 359 PVTRRPEFAYYDPDTATRSKLVPYDFLLGRVANRDIEAGTVISESELAEQGAKGGIGSVI 418 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV 169 P ++A + S + DH+D++ L + T Sbjct: 419 PPDRQAVVISASQILG-SEYLSVGDHLDLLGSFKLEHVRTTEET 461 >gi|309790167|ref|ZP_07684739.1| SAF domain protein [Oscillochloris trichoides DG6] gi|308227752|gb|EFO81408.1| SAF domain protein [Oscillochloris trichoides DG6] Length = 274 Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 68/238 (28%), Gaps = 52/238 (21%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K L I++ + + + + V++ D+ G + Sbjct: 18 KNNPLPAILIVVGLLGAVTLAILGFLESRKSE-------------TVVVMVRDVPYGQQI 64 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L V P + + G + D ++ L+ Sbjct: 65 SAEDLGTVTVPLHRPAQLA-----GVSDPATVVGQYAARNLGSNDLLQPSMLMAAPPSQP 119 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------------- 162 + +A + + ++ G + +D V++ Sbjct: 120 VYPNGEQLQANMVPVPFATTTIGPLSYHDRVNIGFNDPSGAPDLCDQVRRAADGQPSAMP 179 Query: 163 ------RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 +P +LS++RV+ +D + A LELTP Q+ + A Q+ Sbjct: 180 VVSTGMTRPYACRLLSSVRVLYVDEA---------ANVAYLELTPYQSHTIWALQAAG 228 >gi|300741834|ref|ZP_07071855.1| SAF domain protein [Rothia dentocariosa M567] gi|300381019|gb|EFJ77581.1| SAF domain protein [Rothia dentocariosa M567] Length = 236 Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 51/153 (33%), Gaps = 30/153 (19%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + +K D+++G +TP++L + D ++ + + I Sbjct: 54 QTYTYYTAKNDISIGQKITPDMLIEKQVNLGDSKDRYLSREQLESGKY-----IAVRQIP 108 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------ 157 G+ I + + + +R T+ + + +K + VD+ ++ Sbjct: 109 AGELIS--------SASAHENIQERRRLVTVTLD--RGIASTLKAGERVDIWVISSGKEK 158 Query: 158 -------RSLSERKPTVTVVLSNIRV--IAIDH 181 + + ++ N + IA+D Sbjct: 159 QKVPEGEGKNEDNESEQKPLVQNAEISTIAVDE 191 >gi|269796338|ref|YP_003315793.1| SAF domain-containing protein [Sanguibacter keddieii DSM 10542] gi|269098523|gb|ACZ22959.1| SAF domain-containing protein [Sanguibacter keddieii DSM 10542] Length = 261 Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 71/215 (33%), Gaps = 26/215 (12%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++A +V ++ P V+++ L G +T + L V P +G Sbjct: 58 VVAALVVGLATTLVVHRLSPTPEPRDPVVVASTALPAGTTLTADHLRTVRLPSAVTPEGA 117 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 P+ + G + VP+ G + LVD + G P G A + ++ + Sbjct: 118 ------PDDADTVVGRTLAVPVTTGTVLGDTLLVDDTSTG-----PPGTVVAAVRLAEPA 166 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLS-----NIRVIAIDHNIDSDER------- 188 + ++ P VD++ L + + + V+ + + Sbjct: 167 LLA-VLTPGTRVDLLAATPLHDHGEGTSTAAATTLAVRALVLPTPASPQEETGFLSGAGG 225 Query: 189 --VLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + +TP +A L +S V+ Sbjct: 226 TAPGSSDLLLVAVTPDEATYLANVAGRQAVSAVVV 260 >gi|306823596|ref|ZP_07456971.1| SAF domain protein [Bifidobacterium dentium ATCC 27679] gi|309802885|ref|ZP_07696986.1| SAF domain protein [Bifidobacterium dentium JCVIHMP022] gi|304553303|gb|EFM41215.1| SAF domain protein [Bifidobacterium dentium ATCC 27679] gi|308220352|gb|EFO76663.1| SAF domain protein [Bifidobacterium dentium JCVIHMP022] Length = 213 Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 24/183 (13%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 A+ +++ + G +T +++ P + ++ + ++ G++ ++ I Sbjct: 51 AETRPAVVTTQRIRRGDTITASVVAVRDIPYDAAWNNAFHTID------DVTGMVAQIDI 104 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD----VVMVR 158 G + S ++P+G A + ++ S + D V V Sbjct: 105 PDGGIVTATM------ARASPMIPQGHTAVDVRLASSI---DELDVGDEVTLSGAVPAQG 155 Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 + + + S VI + +TAT ++P +A A++ Q A + Sbjct: 156 DAGDDGGALRELASRATVIG-----KPAKDANGMATATFAMSPDEAAAVLQVQEYAAIIA 210 Query: 219 VLR 221 V R Sbjct: 211 VTR 213 >gi|260904284|ref|ZP_05912606.1| SAF domain-containing protein [Brevibacterium linens BL2] Length = 209 Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 50/169 (29%), Gaps = 16/169 (9%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 ++++ +L G + L V FP V D V + + G Sbjct: 43 TPDPGGTPIVVANRNLPPGSQLRTQDLTLVEFPARLVPDKAFTSVSDADHKRTSAG---- 98 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 + KG P+ ++D+ + + ++ ++ +++P + + Sbjct: 99 --LSKGSPLTQSAVLDQQ----ALPDGSTDLLMPVRLADDASAA-LLQPGQRIRLFSSLP 151 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208 V V V + G ++ L+ A + Sbjct: 152 DGGSDIVVKEVTIARLV-----DKGEGISAESGQLVSVILSSGDAARIA 195 >gi|257792958|ref|YP_003186357.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479650|gb|ACV59968.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 235 Score = 56.7 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 81/251 (32%), Gaps = 47/251 (18%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + + V G IA + +E V +++ L Sbjct: 1 MKSWVRYTLATTLFVVGVGGSIAYNQFVSPMLTSEW-----------VYVARTQLPADTP 49 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + +E + P+ V I + L G P+ + L Sbjct: 50 IQASDVERIRVPKSEVSPDAITNAEG------LMGTYTAQPVDQNQV-----LTALDTEP 98 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV--------LS 172 + G + + ++V ++ D+VD++ + V ++ Sbjct: 99 DPFTITPGTEDVPIPSTWIASVSETLRQGDYVDLIPIAEPQAGSNNVGMLTTTSEASEFK 158 Query: 173 NIRVIAIDHNIDS----------------DERVLVGSTATLELTPMQAKALVAAQSVAKL 216 ++ V+++ + ++ V ++ +++T +A+AL + K Sbjct: 159 HLLVLSVHTDNNAEVTSQQTGAPQSVGARGNGSGVPASVDVKMTSAEAQALASLIQQ-KY 217 Query: 217 SLVLRSIADLN 227 L++ ++D N Sbjct: 218 QLLIVGVSDDN 228 >gi|291516490|emb|CBK70106.1| Flagellar basal body P-ring biosynthesis protein [Bifidobacterium longum subsp. longum F8] Length = 189 Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 53/181 (29%), Gaps = 18/181 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 K ++++ + G ++ ++ P ++++ G + ++ Sbjct: 27 AVVKTEPMVVAARSIRRGDIILAADVQLADMPVSAA------GPSWTGNIEDVVGKVAQI 80 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I DPI + + P G + ++ S + D V +V Sbjct: 81 DIEAADPIS------THMARDAPVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGC 131 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + N V+ + + + P A ++ Q + V+ Sbjct: 132 EGADC---TLAENATVMNVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 188 Query: 221 R 221 R Sbjct: 189 R 189 >gi|312133843|ref|YP_004001182.1| flga [Bifidobacterium longum subsp. longum BBMN68] gi|311773134|gb|ADQ02622.1| FlgA [Bifidobacterium longum subsp. longum BBMN68] Length = 189 Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 53/181 (29%), Gaps = 18/181 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + ++++ + G ++ ++ P ++++ G + ++ Sbjct: 27 AVVETEPMVVAARSIRRGDIILAADVQLADMPVSAA------GPSWTGNIEDVVGKVAQI 80 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I DPI + + P G + ++ S + D V +V Sbjct: 81 DIEAADPIS------THMARDAPVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGC 131 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + N V+ + + + P A ++ Q + V+ Sbjct: 132 EGADC---TLAENATVMNVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 188 Query: 221 R 221 R Sbjct: 189 R 189 >gi|322691896|ref|YP_004221466.1| hypothetical protein BLLJ_1707 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456752|dbj|BAJ67374.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 189 Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 53/181 (29%), Gaps = 18/181 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + ++++ + G ++ ++ P ++++ G + ++ Sbjct: 27 AVVETEPMVVAARSIRRGDIILAADVQLADMPVSAA------GPSWTGNIEDVVGKVAQI 80 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I DPI + + P G + ++ S + D V +V Sbjct: 81 DIEAADPIS------THMARDAPVAPTGTTVIEVRLASSV---DDVLAGDQVRLVSAVGC 131 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + N V+ + + + P A ++ Q + V+ Sbjct: 132 EGADC---TLAENATVMNVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVV 188 Query: 221 R 221 R Sbjct: 189 R 189 >gi|326383759|ref|ZP_08205444.1| SAF domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197523|gb|EGD54712.1| SAF domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 182 Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 68/198 (34%), Gaps = 18/198 (9%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 M L+ V + VL + DL G V+T + L V P V + D Sbjct: 1 MALLLVIAATASVVYSHRRPDAPRVLTAAADLRPGTVLTADDLTSVPMPAATVPASALRD 60 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS-AV 142 + G + P+ +G+ I +L+ L++ L A + + + +V Sbjct: 61 ------TGKAVGQRLTGPVTRGEIITETRLLTSR---LAAQLTGSSTARLVPVRPADESV 111 Query: 143 GGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPM 202 +++ D VDV+ V+ V A + + S L + Sbjct: 112 ATLVRQGDTVDVL--------DADAAVLARGAVVAATPSAVSNRGIGGASSPILLAMNEQ 163 Query: 203 QAKALVAAQSVAKLSLVL 220 A + A L+LVL Sbjct: 164 SAHEVAATGLGMALALVL 181 >gi|315646608|ref|ZP_07899726.1| SAF domain protein [Paenibacillus vortex V453] gi|315278251|gb|EFU41571.1| SAF domain protein [Paenibacillus vortex V453] Length = 365 Score = 56.3 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 31/178 (17%) Query: 2 KLTRLMGIVVSGVF---ALVAGIIAMRLVSPHHVQTEE-------------VITENPAKF 45 + +L+ ++G AL AG + L Q EE + Sbjct: 7 RSRKLIFAGLAGAAVTGALCAGTMIYYLHGYKEQQGEERMKYELRITELEETQLQQLNSM 66 Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 + D+ G + ++ V P E + + +E+ G V++ +L+G Sbjct: 67 QVAWVPVRDIPPGHFIEAKDIKEVRLPYEGASNN------LLSVKEEIAGKGVKIELLQG 120 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 PI L + S L + ++ + ++ D VDV + + Sbjct: 121 TPITRTMLFEEEPTP-SDLRHREMKSVYLPSD--------LRQGDVVDVRVQFPTGQD 169 >gi|260914313|ref|ZP_05920782.1| flp operon protein C [Pasteurella dagmatis ATCC 43325] gi|260631414|gb|EEX49596.1| flp operon protein C [Pasteurella dagmatis ATCC 43325] Length = 262 Score = 55.9 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 56/171 (32%), Gaps = 10/171 (5%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS----KGDLAVGMVV 61 L I + + GI+ M V K + +I+ K D+ G ++ Sbjct: 2 LFIISFLTLVVGIGGILFMPTSGDGEDSQTFVTQPQVEKKVEKVITIAELKRDVKKGTLL 61 Query: 62 TPNILEWVAFPEENVFD---GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + + +V ++ L G L+ + G + ++ + Sbjct: 62 QSDDYAISQVTVSEDNPLINNDLSNVLANSSSHSLQGYLIGDNLSSGSLLSNMMIIAPDD 121 Query: 119 GG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 +SS+ K + A + I S + I D+V + ++ + + Sbjct: 122 PRFLMSSIDTKQEVAYRIYIKSDERYLLDTIHSGDYVSIYNQKNALDSRNI 172 >gi|218289538|ref|ZP_03493766.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218240406|gb|EED07588.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 235 Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 31/251 (12%), Positives = 75/251 (29%), Gaps = 47/251 (18%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + + V G IA V +++ + Sbjct: 1 MKSWVRYTLATTLFVVGVGGSIAYNQF-----------VAPILTSEWVYVARTQMPADTP 49 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + +E + P+ V I + L G P+ + L Sbjct: 50 IQATDVERIRVPKSEVSPDAITNAEG------LIGAYTAQPVDQNQV-----LTALDTEP 98 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV--------LS 172 + G + + ++V ++ D+VD++ + V Sbjct: 99 DPFTITPGTEDVPIPSTWIASVSETLRQGDYVDLIPIAEPQAGSNNVGTFTTTSEASEFK 158 Query: 173 NIRVIAIDHNIDS----------------DERVLVGSTATLELTPMQAKALVAAQSVAKL 216 ++ V+++ + ++ V ++ +++T +A+AL + K Sbjct: 159 HLLVLSVHTDNNAEVTSQQTGAPQSVGARGNGSGVPASVDVKMTSAEAQALASLIQQ-KY 217 Query: 217 SLVLRSIADLN 227 L++ ++D N Sbjct: 218 QLLIVGVSDDN 228 >gi|297626968|ref|YP_003688731.1| hypothetical protein PFREUD_18030 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922733|emb|CBL57311.1| Hypothetical protein PFREUD_18030 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 211 Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 67/195 (34%), Gaps = 19/195 (9%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 V + + + V+I+ LA G+ V + + + P E + D Sbjct: 31 VAVLTALDPSASSSHTVVIASRPLAAGVAVGADDVTTLQVPAEVATSATLADP------G 84 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 G +V VP G + V +G S G I V G++ + Sbjct: 85 AAIGQVVAVPRPAGTVLTSSDFVGKGLVADS----DGLTLVPFRIEDK-GVAGVLGVGNQ 139 Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID----SDERVLVGSTATLELTPMQAKAL 207 + VV ++ V+ S +R+ A+ D G+ + A+ L Sbjct: 140 ISVVGANPGAD----TRVIASRVRIAALPSPGSSGALDDSSSSSGALVIVAADSHTAREL 195 Query: 208 VAAQSVAKLSLVLRS 222 AA S LS+VL S Sbjct: 196 AAAASEYTLSVVLES 210 >gi|90409527|ref|ZP_01217563.1| hypothetical protein PCNPT3_13790 [Psychromonas sp. CNPT3] gi|90309368|gb|EAS37617.1| hypothetical protein PCNPT3_13790 [Psychromonas sp. CNPT3] Length = 84 Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 S TLE+ P QA ++ A + LS++LR+ +D + ++ D+ D+ E K++Q Sbjct: 6 SAVTLEVLPAQANTVILANQLGTLSMLLRNSSDNSILANTQVDIGDIFPEIKQVQ 60 >gi|253576735|ref|ZP_04854062.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843945|gb|EES71966.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 318 Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 73/225 (32%), Gaps = 45/225 (20%) Query: 2 KLTRLMGIVVSGVFALVAGIIAM-------------RLVSPHHVQTEEVITENPAKFINV 48 K +++ + GV A A L+ + Q + + + + Sbjct: 7 KTKQMLLSGLVGVVAAGALFTGYTFVRERHVHAERKALIQDYEAQLASLRDQAQQRTVQG 66 Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 + D+ G + + L+ V P +V + + + G ++ + P+ Sbjct: 67 WVPTRDIPAGNRIAASDLKRVELPANSVPADLFK------SQEAIAGKYAKIALRSMTPL 120 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168 + + + +P R + ++K ND +D+ + Sbjct: 121 TEALVYEE------APVPDDLRW---REMAFVQLPQVLKVNDVIDIRIQFPTGHD----Y 167 Query: 169 VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213 ++LS +V + + T+ +T +A+ L + ++ Sbjct: 168 ILLSKKKVADLSSD-------------TITVTLDEAEILSLSSAI 199 >gi|41407019|ref|NP_959855.1| hypothetical protein MAP0921c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395370|gb|AAS03238.1| hypothetical protein MAP_0921c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 226 Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 65/188 (34%), Gaps = 13/188 (6%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 ++ + V++++ DL G +T + V +G P + + G Sbjct: 46 RSDPAGDYAPVVVAEHDLRPGAALTAADVRLEKRLAATVPEG------SPAEIGAVLGST 99 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLS--SLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + P +G+ + +L+ + S G R + A+ +++P D VDV+ Sbjct: 100 LAGPARRGEVLTDVRLLGSRLAEAAVGSKAAAGARIVPLH-PADGALIDLVRPGDVVDVL 158 Query: 156 MVR---SLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212 S V+ ++ V+ + + + + L A + A Sbjct: 159 AAPANTSAETTHAAPKVLATDAVVVLV-SAREKIQAAGADRVVLVALPAGVANTVAGAAL 217 Query: 213 VAKLSLVL 220 ++L L Sbjct: 218 GQTVTLTL 225 >gi|163846486|ref|YP_001634530.1| SAF domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222524269|ref|YP_002568740.1| SAF domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163667775|gb|ABY34141.1| SAF domain protein [Chloroflexus aurantiacus J-10-fl] gi|222448148|gb|ACM52414.1| SAF domain protein [Chloroflexus sp. Y-400-fl] Length = 269 Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 65/243 (26%), Gaps = 61/243 (25%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + L I++ + A + + + V+I D+ G + Sbjct: 15 RSNPLPAILIGLGLLITAVFTVIAFLEASRSE-------------PVVILARDVPYGQQI 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + L V P + ++ G + D ++ L++ Sbjct: 62 SADDLAVVLLPRHRP-----VQLTGISSPALAVGQYAARHLAANDLLQPSMLMEHAPTQP 116 Query: 122 SS----LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---------------- 161 L G A G + D V++ Sbjct: 117 VYPNGEALTPGMVAVPFSTETI----GPLTHRDRVNIGFSDPNGSPDVCDQARQAAAGRE 172 Query: 162 ----------ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 + +P +LS RV+ +D A LELTP Q+ + A Q Sbjct: 173 PTVNPPDSPLQPRPYACRLLSGARVLYVD---------GEAGIAYLELTPYQSHVIQAVQ 223 Query: 212 SVA 214 + Sbjct: 224 AAG 226 >gi|254773979|ref|ZP_05215495.1| hypothetical protein MaviaA2_04794 [Mycobacterium avium subsp. avium ATCC 25291] Length = 226 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 65/188 (34%), Gaps = 13/188 (6%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 ++ + V++++ DL G +T + V +G P + + G Sbjct: 46 RSDPAGDYAPVVVAEHDLRPGAALTAADVRLEKRLAATVPEG------SPAEIGAVLGST 99 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLS--SLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + P +G+ + +L+ + S G R + A+ +++P D VDV+ Sbjct: 100 LAGPARRGEVLTDVRLLGSRLAEAAVGSKAAAGARIVPLH-PADGALIDLVRPGDVVDVL 158 Query: 156 MVR---SLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212 S V+ ++ V+ + + + + L A + A Sbjct: 159 AAPANTSAETTHAAPKVLATDAVVVLV-SAREKIQAAGADRVVLVALPAGVANTVAGAAL 217 Query: 213 VAKLSLVL 220 ++L L Sbjct: 218 GQTVTLTL 225 >gi|84498693|ref|ZP_00997446.1| hypothetical protein JNB_16856 [Janibacter sp. HTCC2649] gi|84381030|gb|EAP96917.1| hypothetical protein JNB_16856 [Janibacter sp. HTCC2649] Length = 191 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 58/180 (32%), Gaps = 20/180 (11%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 P + L++ DL G V+T + L E+ G + +++L G L+ Sbjct: 12 RPPPPPTTSALVAARDLPSGAVLTADDLRTTQIRGESDSPGTV---GAVGRVRDLVGRLL 68 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 P+ G+ + +LV + LP AA + + ++ ++ V + Sbjct: 69 TSPVAAGELVTTSRLV---PRTAAEGLPGDTVAAHVLHADERSL-DLVSAGQRVTLFA-- 122 Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSD------ERVLVGSTATLELTPMQAKALVAAQS 212 + +++ V+ +D + L + A Q Sbjct: 123 -----DTGGEPLATDVLVLGVDTPETPALTGSLPTSGSPPRGLVIALPHTALDRVFAGQR 177 >gi|62389769|ref|YP_225171.1| hypothetical protein cg1002 [Corynebacterium glutamicum ATCC 13032] gi|21323646|dbj|BAB98273.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032] gi|41325104|emb|CAF19585.1| putative secreted protein [Corynebacterium glutamicum ATCC 13032] Length = 217 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 39/225 (17%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + L I+ + + ++A + ++ ++ G V Sbjct: 14 RTLVLRRIIAFILIGIAGLLMAHSWLKKDPTA---------------VVIVQEIPAGTKV 58 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG---- 117 + L A P + +++ ++ G++ + G+ + V Sbjct: 59 EASDLGLQAIPTSLLPSTSY------DSIDDVVGLVAASTLSSGEIATKPRFVGTELINS 112 Query: 118 --NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 S L + + ++ S + +++ D + VV S + + Sbjct: 113 IATNVTDSSLVEEINMVPLSLAEPSVIP-LLQHGDTISVV---SQDPDTGLPENIAAGGT 168 Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 VI ST + L A+ + A L++VL Sbjct: 169 VILAG--------GTDPSTILIALPQSIAEKVAAQSLNTPLAVVL 205 >gi|326331487|ref|ZP_08197777.1| putative membrane protein [Nocardioidaceae bacterium Broad-1] gi|325950743|gb|EGD42793.1| putative membrane protein [Nocardioidaceae bacterium Broad-1] Length = 224 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 60/180 (33%), Gaps = 16/180 (8%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 +VL+++ + G ++ + ++ + + + ++ ++ G + Sbjct: 56 ATTDTQDVLVARHTIERGSLIEADDIKRIQISADPALE-----ALPGSSYGDVIGKKAGL 110 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I G + E S + P G + ++ S + ++ D V VV+ + Sbjct: 111 DIAAGALLTEE------ATTSSPMPPDGMSVVGLALATSHSPAVNLRTGDRVRVVVTPAE 164 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 P T + V+A + + + A L + + + +VL Sbjct: 165 GAEAPAGTPEFTEAEVVA-----ARADDTSGMFLVDVLVPYADAPVLASRAASGNVGIVL 219 >gi|212716655|ref|ZP_03324783.1| hypothetical protein BIFCAT_01588 [Bifidobacterium catenulatum DSM 16992] gi|212660359|gb|EEB20934.1| hypothetical protein BIFCAT_01588 [Bifidobacterium catenulatum DSM 16992] Length = 229 Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 67/209 (32%), Gaps = 31/209 (14%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71 + V A +A A++ V V+I+ +A G V+T + L Sbjct: 42 AAVCAGLAVFAALQCVRLT------------ISTQPVVIAAQPIAKGSVITADSLALRDL 89 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRA 131 P + D + G++ +V + +G + S ++P+G A Sbjct: 90 PYDEALRNVFHDCD------DAVGLIAQVDVAEGGIVTSTM------ARASPVVPEGYTA 137 Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV--IAIDH--NIDSDE 187 + ++ S + D V + E P + + + + Sbjct: 138 IEVRLASS---ADNLSLGDIVTLSSATIFGEATPEASPDTDAVTLRELCSGAILTAKPSR 194 Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKL 216 + A + P +A ++ AQ + + Sbjct: 195 DADGNTLAVFAMPPHEAATVLQAQEYSAI 223 >gi|284045239|ref|YP_003395579.1| hypothetical protein Cwoe_3787 [Conexibacter woesei DSM 14684] gi|283949460|gb|ADB52204.1| hypothetical protein Cwoe_3787 [Conexibacter woesei DSM 14684] Length = 230 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 18/213 (8%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 + E + + +VL+++ +A G + + P + D + Sbjct: 23 SSVQRREAALGQALGPLTHVLVTRAPVAAGAPLADARPALRSLPRRYAPPDALTDPAVLD 82 Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148 G V + G + L + + +G+R A + ++ I Sbjct: 83 ------GAQAAVALPVGAYVTGASLRTPAAA--AVPVGRGERVAEV---VALGDPESIVA 131 Query: 149 NDHVDVVMVRSLSERKPTVTVV-LSNIRVIAIDHNI-----DSDERVLVGSTATLELTPM 202 VDV++ R +P TV+ L ++ V+A D A+L +T Sbjct: 132 GSRVDVLVTRDTDGDRPGETVLALEDVEVLAAAAPPAAEIGADDAGAGARVAASLRVTVR 191 Query: 203 QAKALVAAQSVAK-LSLVLRSIADLNPSSSEDS 234 QA L AAQS A+ L L+ R+ D + + Sbjct: 192 QAVYLAAAQSFARELRLLPRAPQDRARGRAGLA 224 >gi|118465730|ref|YP_880352.1| hypothetical protein MAV_1099 [Mycobacterium avium 104] gi|118167017|gb|ABK67914.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 226 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 13/194 (6%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 + ++ + V++++ DL G +T + V +G P + Sbjct: 40 AAIAALRSDPAGDYAPVVVAEHDLRPGAALTAADVRLEKRLAATVPEG------SPAEIG 93 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLS--SLLPKGKRAATMDISISSAVGGMIKPN 149 + G + P +G+ + +L+ + S G R + A+ +++P Sbjct: 94 AVLGSTLAGPARRGEVLTDVRLLGSRLAEAAVGSKAAAGARIVPLH-PADGALIDLVRPG 152 Query: 150 DHVDVVMVR---SLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKA 206 D VDV+ S V+ ++ V+ + + + + L A Sbjct: 153 DVVDVLAAPANTSAETTHAAPKVLATDAVVVLV-SAREKIQAAGADRVVLVALPAGVANT 211 Query: 207 LVAAQSVAKLSLVL 220 + A ++L L Sbjct: 212 VAGAALGQTVTLTL 225 >gi|125973145|ref|YP_001037055.1| hypothetical protein Cthe_0627 [Clostridium thermocellum ATCC 27405] gi|256003941|ref|ZP_05428927.1| SAF domain protein [Clostridium thermocellum DSM 2360] gi|281417338|ref|ZP_06248358.1| SAF domain protein [Clostridium thermocellum JW20] gi|125713370|gb|ABN51862.1| hypothetical protein Cthe_0627 [Clostridium thermocellum ATCC 27405] gi|255992069|gb|EEU02165.1| SAF domain protein [Clostridium thermocellum DSM 2360] gi|281408740|gb|EFB38998.1| SAF domain protein [Clostridium thermocellum JW20] gi|316940628|gb|ADU74662.1| hypothetical protein Clo1313_1601 [Clostridium thermocellum DSM 1313] Length = 291 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 63/190 (33%), Gaps = 32/190 (16%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGD--LAVGMV 60 +L+ I VS + + I + ++ +++++ K + + Sbjct: 16 PKKLLAIFVSVAVIIGSFIYLNS------------VNDSAKDTVDIVVVKASGGIPANTL 63 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGN 118 +T + + + + D I + + + + G PI ++L D + Sbjct: 64 ITKDNIGKYSIIRKEFNDDMIT----YDKVDSILNKYSLYYLRNGAPIYYDQLTDEKPRD 119 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------------LSERKPT 166 L + T+ G +++P D V V + + S++ Sbjct: 120 TEWLYDLEENYEVLTIKYDYLECGGSILRPGDLVRVRVTYTEEIPSSDGMMYGGSKKVKK 179 Query: 167 VTVVLSNIRV 176 ++ +IRV Sbjct: 180 TEILFDSIRV 189 >gi|326773108|ref|ZP_08232392.1| flp pilus assembly protein CpaB [Actinomyces viscosus C505] gi|326637740|gb|EGE38642.1| flp pilus assembly protein CpaB [Actinomyces viscosus C505] Length = 261 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 46/134 (34%), Gaps = 13/134 (9%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 + + + V+ P + VL++ ++ G ++T + P + + Sbjct: 1 MVALCLGTAVLVALSVLRPGPQRGQQVLVASHAISAGAILTDQDVSISTLPTGALPQSPL 60 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA 141 + ++ G + + KG + +G L+ L +R + I Sbjct: 61 T------STEQAVGNRAAISLEKGTVLTASM----TSGSLAQQLGDDERLVQVAID---V 107 Query: 142 VGGMIKPNDHVDVV 155 + +P VD++ Sbjct: 108 GAELARPGARVDII 121 >gi|291529651|emb|CBK95237.1| SAF domain [Eubacterium rectale M104/1] Length = 273 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 93/256 (36%), Gaps = 38/256 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + +V V + G + V + + + V +V+I+ D+ G + Sbjct: 17 MNKSLTKALVAILVAII--GWTGLTFVESYILTDKNV--------TSVVIASADIPQGTI 66 Query: 61 VTPNI----LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 +T + + + V + D+ + ++G + + G+ + ++ + Sbjct: 67 ITKDNAENYFKKENVNSDLVTKSTVTDI------KSIEGKFL-TNVAAGEIVTSDRYYET 119 Query: 117 GNGGLSSLLPKGKRAATMDI---SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173 + K ++ S ++V G I+ D VD+ + ++ + N Sbjct: 120 KDT------RDLKNPVSLTFAAGSAENSVNGTIRGGDIVDIYTSVTTNDVVTY-QLAREN 172 Query: 174 IRVI-AIDHN---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 + + A D + IDS ++ V ST ++L A A S L +V D+N Sbjct: 173 VYIENAYDSSYVKIDSADQATVASTFLVKLDEDDAANFKNAISQGDLLMV---KKDINQK 229 Query: 230 SSEDSDVWDVQEEGKE 245 + + E+ E Sbjct: 230 DTASVIIPAKTEKTVE 245 >gi|304405122|ref|ZP_07386782.1| SAF domain protein [Paenibacillus curdlanolyticus YK9] gi|304346001|gb|EFM11835.1| SAF domain protein [Paenibacillus curdlanolyticus YK9] Length = 240 Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 55/166 (33%), Gaps = 15/166 (9%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 + + +++ K +A G + L + + + V + ++ + + + + Sbjct: 26 AVQARQLEGKDMVRIVVPKRFIAAGERLEAADLTYRSIAKSAVQQDMVLELVEADGWEAV 85 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 P+ +P+ KL L + + + S +V I+ D V Sbjct: 86 V------PLGAEEPLLKWKLDRYR-----LLPDQSQSTFQIPRSYVLSVSNGIRAGDLVV 134 Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLE 198 + M + ++V ++ +++ + + +L Sbjct: 135 LYMSGEADSS---SRLFDKPVKVASVKSAANTEVDDSDQSNLLSLA 177 >gi|296169796|ref|ZP_06851411.1| SAF domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895590|gb|EFG75289.1| SAF domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 225 Score = 53.6 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 68/191 (35%), Gaps = 13/191 (6%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 + + +V+++ DL G +TP + + DG + DV + Sbjct: 42 AALRANPAGDYADVVVADHDLRPGAALTPADVRLEKRLATTLPDGALADVS------AVA 95 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLL--PKGKRAATMDISISSAVGGMIKPNDHV 152 + P +G+ + +L+ + L G R + ++ SA+ +++ D V Sbjct: 96 NSTLTGPARRGEVLTDVRLLGSRLADAAIALKAGPGARLVPLRLAD-SALIELVRVGDVV 154 Query: 153 DVV---MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209 DV+ + + VV ++ V+ + + + + L A + Sbjct: 155 DVLAAPAAGTPGTPQAVPRVVATDAVVVLVSAKPKA-QAADGDRVVLVALPARVANTVAG 213 Query: 210 AQSVAKLSLVL 220 + ++L L Sbjct: 214 SALGQAVTLTL 224 >gi|225351088|ref|ZP_03742111.1| hypothetical protein BIFPSEUDO_02674 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158544|gb|EEG71786.1| hypothetical protein BIFPSEUDO_02674 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 229 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 69/219 (31%), Gaps = 31/219 (14%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + +++ V A +A A++ V V+I+ +A G V+ Sbjct: 32 RKNARLHRLLAAVCAGLAMFAALQCVRLT------------ISTQPVVIAAQPIAKGSVI 79 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T + L P + D + G++ +V + +G + Sbjct: 80 TADSLALRDLPYDKALRNVFHDCA------DAVGLIAQVDVAEGGIVTSTM------ARA 127 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV--IAI 179 S ++ +G + ++ S + D V + E P + + + + Sbjct: 128 SPVVSEGYTVIEVRLASS---ADNLSLGDVVTLSSATIFGEATPETSPDTDAVTLRELCS 184 Query: 180 DH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 + A + P +A ++ AQ + + Sbjct: 185 GAILTAKPSRDADGNTLAVFAMPPHEAATVLQAQENSAI 223 >gi|308235642|ref|ZP_07666379.1| hypothetical protein GvagA14_05378 [Gardnerella vaginalis ATCC 14018] gi|311115187|ref|YP_003986408.1| hypothetical protein HMPREF0421_21303 [Gardnerella vaginalis ATCC 14019] gi|310946681|gb|ADP39385.1| hypothetical protein HMPREF0421_21303 [Gardnerella vaginalis ATCC 14019] Length = 223 Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 82/220 (37%), Gaps = 44/220 (20%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + L+ ++ F VA +IA+ +++ + + ++ D++ G ++ Sbjct: 29 RQKALLLNALTIFFISVATLIAINMITSCQ------------ETQIIPVAIRDISKGTLI 76 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L +V P+ +VF+ I+ NA+ + I G PI ++ + Sbjct: 77 KQDDLSYVNVPKNSVFNHVINKDLIKNAI------IATCNIKYGMPIFTSQITQQ----- 125 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN-------- 173 + +P G ++ ++ ++ + +++ + + +V N Sbjct: 126 -AKIPPGFTTISIKLASNN---QDLNIGENISIAFSKVSRGDHNENDIVQENKNISFIHD 181 Query: 174 IRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213 + V+ ++ + A L + A ++ QS+ Sbjct: 182 VIVVKTGNSSQN---------ALLAMPAESALQIINTQSI 212 >gi|254478253|ref|ZP_05091634.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653] gi|214035849|gb|EEB76542.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653] Length = 181 Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 30/181 (16%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 I ++ + A V+ + + K V+I + D+ G V++ + ++ Sbjct: 4 IIKIALITATVSAAFMLVFMQNIQ------------KTEKVVIVEKDIPAGTVISEDAVK 51 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127 + P V + ++ G +V+ ++GD I +E L + S L Sbjct: 52 VIDVPASVVNPDYARSPA------DVVGKVVKEGRVRGDFIPVEILTSKD----SQPLGP 101 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE 187 T+ I+ ++ D V V+ R +L +VI++ Sbjct: 102 DHAVMTVPITSVE--AKTLQSGDTVSFVVFDQTGSR------ILDGFKVISVVKEDSDKA 153 Query: 188 R 188 Sbjct: 154 S 154 >gi|163840370|ref|YP_001624775.1| hypothetical protein RSal33209_1625 [Renibacterium salmoninarum ATCC 33209] gi|162953846|gb|ABY23361.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC 33209] Length = 214 Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 17/180 (9%) Query: 42 PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101 K ++V +K D+AVG + +LE V + V D + + Sbjct: 42 ADKTVDVYAAKSDIAVGHTINQELLERVKVRLDEVQDHYFLASDIFPG-----NAVAARR 96 Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 I GD + + + + P + + K VDV + + Sbjct: 97 IPHGDLVAKSSVDQPQALARNPVAPTLEEKLPIGA----------KVGSRVDVWVSLPDA 146 Query: 162 ERKPTVT--VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + V ++L + + +D + + L P + L A S AK+S+V Sbjct: 147 KTGGFVEPRLLLPGVEISQLDSESNGLGSARTTTVYVLAGKPQLPQILGALASKAKVSVV 206 >gi|167039378|ref|YP_001662363.1| SAF domain-containing protein [Thermoanaerobacter sp. X514] gi|300914019|ref|ZP_07131336.1| SAF domain protein [Thermoanaerobacter sp. X561] gi|307725296|ref|YP_003905047.1| SAF domain-containing protein [Thermoanaerobacter sp. X513] gi|166853618|gb|ABY92027.1| SAF domain [Thermoanaerobacter sp. X514] gi|300890704|gb|EFK85849.1| SAF domain protein [Thermoanaerobacter sp. X561] gi|307582357|gb|ADN55756.1| SAF domain protein [Thermoanaerobacter sp. X513] Length = 181 Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 67/186 (36%), Gaps = 32/186 (17%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++R++ I + A ++ +N K V+I + D+ G V++ Sbjct: 1 MSRIIKIALITAAVSAAFMLVF--------------MQNIQKTEKVVIVEKDIPAGTVIS 46 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + ++ V P V + ++ ++ G +V+ ++GD I +E L + + Sbjct: 47 EDAVKVVDIPASAVRPDYAR------SLTDVVGKVVKEGRVRGDFIPVEILTSKD----A 96 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 L T+ ++ ++ D V ++ + VL +VI++ Sbjct: 97 EALGPDHAVMTVPVTSVE--AKTLQSGDTVSFIVFDQTGSK------VLDGFKVISVVKE 148 Query: 183 IDSDER 188 Sbjct: 149 DSDKAN 154 >gi|145295050|ref|YP_001137871.1| hypothetical protein cgR_0993 [Corynebacterium glutamicum R] gi|140844970|dbj|BAF53969.1| hypothetical protein [Corynebacterium glutamicum R] Length = 217 Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 43/227 (18%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + L I+ + + ++A + ++ ++ G V Sbjct: 14 RTLVLRRIIAFILIGIAGLLMAHSWLKKDPTA---------------VVIVQEIPAGTKV 58 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV------- 114 + L A P + +++ ++ G++ + G+ + V Sbjct: 59 ESSDLGLQAIPTSLLPSTSY------DSIDDVVGLVAASTLSSGEIATKPRFVGTELINS 112 Query: 115 -DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173 S + ++ +V +++ D + VV S + + Sbjct: 113 IVTNVTDGSLVEEINMVPLSL---AEPSVIPLLQHGDTISVV---SQDPDTGLPENIAAG 166 Query: 174 IRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 VI ST + L A+ + A L++VL Sbjct: 167 GTVILAG--------GTNPSTILIALPQSIAEKVAAQSLNTPLAVVL 205 >gi|312794261|ref|YP_004027184.1| SAF domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181401|gb|ADQ41571.1| SAF domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 194 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 76/220 (34%), Gaps = 31/220 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK I ++ + A++ +++ +S I V ++K + G + Sbjct: 1 MKNR---IIKLAVIPAVLVALLSYIFISRQ------------TNMIQVPVAKNLIHQGEI 45 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + N + ++ P + G + + ++L G V + GD + + Sbjct: 46 IDDNDITFLKLPSYALPPGTVKE------KEQLVGKRAGVTRVAGDFFYDDVI-----KS 94 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 + + + + +++ + I + ++ S S V N V++I Sbjct: 95 VYVQVYEDETLICVNVPEP--LTRFITEGTKL-IIATTSTSNSGVPPFAV-ENAEVVSIL 150 Query: 181 HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 S+ A +++ QA L ++ +++ Sbjct: 151 SKTTSNTVSSTNTRYAIVKVKRDQAVQLASSLKSGDYTVI 190 >gi|254478346|ref|ZP_05091725.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653] gi|214035704|gb|EEB76399.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653] Length = 181 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 66/186 (35%), Gaps = 32/186 (17%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++R++ I + A ++ +N K V++ + D+ G V++ Sbjct: 1 MSRIIKIALITAAVSAAFMLVF--------------MQNIQKTEKVVVVEKDIPAGTVIS 46 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + ++ + P V ++ ++ G +V+ ++GD I +E L + + Sbjct: 47 EDAVKIIDVPASAV------RPEYARSLTDVVGKVVKEGRVRGDFIPVEILTSKD----A 96 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 L T+ ++ ++ D V ++ + VL +VI++ Sbjct: 97 QPLGPDHAVMTVPVTSVE--AKTLQSGDTVSFIVFDQTGSK------VLDGFKVISVVKE 148 Query: 183 IDSDER 188 Sbjct: 149 DSDKAS 154 >gi|308069314|ref|YP_003870919.1| SAF domain protein [Paenibacillus polymyxa E681] gi|305858593|gb|ADM70381.1| SAF domain protein [Paenibacillus polymyxa E681] Length = 328 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 46/164 (28%), Gaps = 24/164 (14%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---------NVLISKGDLAVGM 59 I V AG + + + + V+ + + + D++ G Sbjct: 17 IGAGIVGIFFAGYLMINIHQMNEVRKQAEVEAEQKWKVYEQEQRTAKKGWAVVRDISPGE 76 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + N L+ + P + D E+ G ++ + KG + + Sbjct: 77 QIASNDLKGIKVPSSQTPSNLLTDKS------EVSGTTAKIELKKGSVLTSAMITADEPT 130 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 + K + +K D VD+ + + Sbjct: 131 PKDLRNRELKVVV---------LPNNLKSGDEVDIRIQFPTGQD 165 >gi|218290594|ref|ZP_03494696.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218239378|gb|EED06575.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 261 Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 52/158 (32%), Gaps = 23/158 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + + + VA + ++ + + V ++ + Sbjct: 1 MAMVSKATMALGLCGIGVAVWLDWMVLERANA------------TVQVPVAAQTIPPYTT 48 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + + W + P + + + G L + + GDPI +L +G+ Sbjct: 49 ITSSDITWKSIPRNALPSDLVTNP---------VGRLTVLGVAAGDPIESSELAAQGSLQ 99 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 + + +++S S + + P V +V+ Sbjct: 100 -AYAASQDDVLVPVNVSPSP-ITEAVTPGATVTLVVNG 135 >gi|256824730|ref|YP_003148690.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547] gi|256688123|gb|ACV05925.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547] Length = 219 Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 18/164 (10%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ DL G V+ L V E + +G + + + G +V P+ +G+ + Sbjct: 47 WVAAADLPTGHVLGSEDLRPV---EGSSPEGVYLTGD--DPLADRAGQVVLRPVGQGEFL 101 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---LSERKP 165 + L L R ++++S + P VD+ +++P Sbjct: 102 PVADLGGADRLDL--------RRVSLEVSP--GSAATLSPGSVVDLWATPRAVAGEKKRP 151 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209 T VL+ V + D ++ Q + L+A Sbjct: 152 TPRQVLAGAEVARVQEAGDRLAGGDQTVAVDFLVSTDQVEELLA 195 >gi|318058041|ref|ZP_07976764.1| hypothetical protein SSA3_08873 [Streptomyces sp. SA3_actG] gi|318081071|ref|ZP_07988403.1| hypothetical protein SSA3_31325 [Streptomyces sp. SA3_actF] Length = 243 Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 19/192 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 ++V+ + D+ G ++ + + ++ D + G Sbjct: 56 QAGDRVSVVRTTKDIPAGGSLSRDNTTDILVAKDESIHYLNWDQIDLAKSKYKLG----S 111 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV----- 155 + KG + E L+ + S++ +GK + + GG +KP D V V Sbjct: 112 ALPKGSLVVGEMLIAKDK----SVVDEGKALVGLALQEGQYPGG-LKPGDTVAVYHVGKD 166 Query: 156 ----MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAA 210 T++ + V D + E T T+ + +A+AL A Sbjct: 167 AGAPASGESDSSAGNRTLLSAQADVKDADGSSKGGEALSTGDRTLTVSVPASEAQALAQA 226 Query: 211 QSVAKLSLVLRS 222 SV ++++VL Sbjct: 227 SSVGEVAVVLVP 238 >gi|256372256|ref|YP_003110080.1| hypothetical protein Afer_1484 [Acidimicrobium ferrooxidans DSM 10331] gi|256008840|gb|ACU54407.1| hypothetical protein Afer_1484 [Acidimicrobium ferrooxidans DSM 10331] Length = 231 Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 78/238 (32%), Gaps = 45/238 (18%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R + + ++G AL A + ++ ++++++ L G V Sbjct: 5 RQRRSVALKIAGTVALGAAVTLGVYSFFS----------KQSQTVDIVVAAKPLVPGEVP 54 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T + L A P+++V G I ++ L+ +V I + P+ + +L G Sbjct: 55 TKSDLAVEAVPQQSVTPGMI----PVANVRVLNNQVVTTTIPQNAPVLVSELAPHLRGN- 109 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT------------- 168 + + S + + D VD+ + Sbjct: 110 ----------YRVFVLTPSVIPPNLTAGDTVDIYAPLQAQASGSSSGSSNAPMSYTAPAP 159 Query: 169 --VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 V + I V+A+ + + L +E+ P +A + A + L + Sbjct: 160 YIPVATAIPVLAVIPSSNGGSSQLE-----IEVPPNEASDIAAVADTSNLVIAFAPPN 212 >gi|261406226|ref|YP_003242467.1| SAF domain-containing protein [Paenibacillus sp. Y412MC10] gi|261282689|gb|ACX64660.1| SAF domain protein [Paenibacillus sp. Y412MC10] Length = 367 Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 55/178 (30%), Gaps = 31/178 (17%) Query: 2 KLTRLMGIVVSGVF---ALVAGIIAMRLVSPHH-------------VQTEEVITENPAKF 45 + +L+ ++G A+ AG + + + EE + Sbjct: 7 RSRKLIFAGLAGAAVTGAVCAGAMLYYVHGSKEQRHVERTQYEQRIAELEETQLQQLNSM 66 Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 + D+ G + ++ V P + + + +E+ G ++ +L+G Sbjct: 67 QAAWVPVRDIPPGHFIEAKDIKEVRLPYDG------TSGNLFSGREEIAGKGAKIELLQG 120 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 PI L + + ++ + ++ D +DV + + Sbjct: 121 MPITGAMLFEEEPTRPDLRHRE-MKSVYLPSD--------LRKGDVIDVRVQFPTGQD 169 >gi|323702231|ref|ZP_08113897.1| SAF domain-containing protein [Desulfotomaculum nigrificans DSM 574] gi|323532721|gb|EGB22594.1| SAF domain-containing protein [Desulfotomaculum nigrificans DSM 574] Length = 212 Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 63/192 (32%), Gaps = 31/192 (16%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++R GI+ + V A+V + + + K V + + G + Sbjct: 1 MSRKWGIITALVIAIVFTTLVGVSSNHKYAAAT--------KPTKVYQAAKFIPQGTTIK 52 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + ++ V FPE + +E+ G V +LK I + Sbjct: 53 ESDIKEVDFPESL-------SSNLIKDKKEIVGKGAVVSMLKDQKIYKGSVSPGAGK--- 102 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 G + +S + + P ++V+++ V + N V + Sbjct: 103 ---RPGFVEILIPTDLSKSALAL--PGEYVNLIPVDDSG-----TQPLYVNALV---KRS 149 Query: 183 IDSDERVLVGST 194 +D+D + ST Sbjct: 150 LDNDGNDIDPST 161 >gi|258652943|ref|YP_003202099.1| SAF domain-containing protein [Nakamurella multipartita DSM 44233] gi|258556168|gb|ACV79110.1| SAF domain protein [Nakamurella multipartita DSM 44233] Length = 224 Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 18/173 (10%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + V++ K D+A+G V+ L V G + + N + + G Sbjct: 56 TKAGQKTPVVVVKSDIAMGEVIERADLSTVEV------AGGVTAIAGAN-LDSVVGQRAA 108 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 V ++ G ++ L + +P G + ++ G + D V V+ + Sbjct: 109 VGLMTGTLLQRSMLTQDHS------MPDGMVQVGVAVTGGRLPAGGVTTGDRVQVLALPE 162 Query: 160 LSERKPTV-TVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 VV + + A D G T+ + +A + A Sbjct: 163 AGGTGTAAPKVVAKDAEIFA----AMEDPTRAGGFLLTVLVPADEAAGVAGAS 211 >gi|311111727|ref|YP_003982949.1| SAF domain-containing protein [Rothia dentocariosa ATCC 17931] gi|310943221|gb|ADP39515.1| SAF domain protein [Rothia dentocariosa ATCC 17931] Length = 218 Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 15/125 (12%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + +K D+++G +TP++L + D ++ + + I Sbjct: 36 QTYTYYTAKNDISIGQKITPDMLIEKQVNLGDSKDRYLSREQLESGKY-----IAVRQIP 90 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 G+ I + + + + +R T+ + + K + VD+ ++ S E+ Sbjct: 91 AGELIS--------SASANENIQERRRLVTVTLD--RGIASTFKAGERVDIWVISSGKEK 140 Query: 164 KPTVT 168 + Sbjct: 141 QKVPE 145 >gi|134298691|ref|YP_001112187.1| SAF domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051391|gb|ABO49362.1| SAF domain protein [Desulfotomaculum reducens MI-1] Length = 270 Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 32/246 (13%), Positives = 77/246 (31%), Gaps = 42/246 (17%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 L + ++V + V H + + + + ++ Sbjct: 14 LKTIFIVLVGIGVTAGSVGQLQTWVDTHQEKVKVPVVKQKVTQ------------YSMIG 61 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 P ++E + + +QE++G + ++ G+ IR +KL + Sbjct: 62 PGMIEMQDKLKLAADPYAVKT------LQEIEGKVAVTDLIPGEQIRPDKLANTD----- 110 Query: 123 SLLPKGKRAATMDIS-ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-- 179 LL G+ T+ I A+ G I+ N V+V+ + +V+ RV+++ Sbjct: 111 ILLQPGEAFVTVRIEKPEQALAGQIRANSIVNVMWTAGPN---SPSSVLAEKARVMSLMD 167 Query: 180 -------------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 ++ + + L++ ++ + + L S Sbjct: 168 EGLKPVHTASVFQGVVTNATGQAPIPKYVMLKVKERESYEFTRPLTGGFILLSEVSKGVQ 227 Query: 227 NPSSSE 232 P Sbjct: 228 TPVPPA 233 >gi|256372054|ref|YP_003109878.1| SAF domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008638|gb|ACU54205.1| SAF domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 237 Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 54/184 (29%), Gaps = 24/184 (13%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + L + + + ++ + V ++ + G + Sbjct: 26 SSALRIVGSIVLAGVSLALLVASWLGGVRNAGAAVG----------VVVTRPIPAGATIE 75 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L + A+ + G V I G + ++ Sbjct: 76 RADLGLASITVPQAV------RATLLAVDDAVGRTAAVTIAPGTLLERSMVLGPRPRTPV 129 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 R+ T+ + +S G+I+P D VDV+ + S P + + + V+ + + Sbjct: 130 -------RSITIAVPSTSVASGVIEPGDRVDVLAT-TQSASSPATLTIATQLLVLDVQAS 181 Query: 183 IDSD 186 + Sbjct: 182 SGDE 185 >gi|289642191|ref|ZP_06474342.1| SAF domain protein [Frankia symbiont of Datisca glomerata] gi|289508037|gb|EFD28985.1| SAF domain protein [Frankia symbiont of Datisca glomerata] Length = 275 Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 8/131 (6%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 P V+++ DLA G + + V+ P + V G + Q+ Sbjct: 40 AVAAARPARPPSPTPVVVAAADLAGGATMAATDVRMVSLPTDVVPVGAVRSP------QD 93 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 G + + +G+PI +++ G AA + I+ + +V ++ DHV Sbjct: 94 AVGRTLTAAVRQGEPITDARVLGP-GLITRRQAAAGLVAAPVRITDAGSVL-FLRVGDHV 151 Query: 153 DVVMVRSLSER 163 +V+ + Sbjct: 152 NVLAAATDVGG 162 >gi|333025173|ref|ZP_08453237.1| putative membrane protein [Streptomyces sp. Tu6071] gi|332745025|gb|EGJ75466.1| putative membrane protein [Streptomyces sp. Tu6071] Length = 243 Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 19/192 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 ++V+ + D+ G ++ + + ++ D + G Sbjct: 56 QAGDRVSVVRTTKDIPAGGSLSRDNTTDILVAKDESIHYLNWDQIDLAKSKYKLG----S 111 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS- 159 + KG + E L+ + S++ +GK + + GG +KP D V V V Sbjct: 112 ALPKGSLVVGEMLIAKDK----SVVDEGKALVGLALQEGQYPGG-LKPGDTVAVYHVGKD 166 Query: 160 -------LSERKPTVTVVLS-NIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAA 210 S +LS V D + E T T+ + +A+AL A Sbjct: 167 AGAPASGESGSSAGNRTLLSAQADVKDADGSSKGGEALSTGDRTLTVSVPASEAQALAQA 226 Query: 211 QSVAKLSLVLRS 222 SV ++++VL Sbjct: 227 SSVGEVAVVLVP 238 >gi|270487708|ref|ZP_06204782.1| conserved domain protein [Yersinia pestis KIM D27] gi|270336212|gb|EFA46989.1| conserved domain protein [Yersinia pestis KIM D27] Length = 154 Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 19/155 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS--KGDLAVG 58 M L+ + V ++GI+ ++P E + K N++++ + DL G Sbjct: 1 MNRKFLILFSLLIVAIGISGIL----LNPDKEIPELLTQTEKRKERNIVLAQTRHDLTAG 56 Query: 59 MVVTPNILEWVAFPEENVFD------------GFIDDVHQPNAMQELDGVLVRVPILKGD 106 +++ + D +LDG L++ IL G Sbjct: 57 TLISKEDYSLQNITVDESSDLVKNDLSHGHRIDGDSIADDRTHDHKLDGHLLKNNILAGS 116 Query: 107 PIRLEKLVDRGNGGLSSL-LPKGKRAATMDISISS 140 I E L+ + S L L G+ I+ + Sbjct: 117 YIIDEMLISPDSREFSRLNLKHGEIIYKFYITEKT 151 >gi|300790122|ref|YP_003770413.1| hypothetical protein AMED_8314 [Amycolatopsis mediterranei U32] gi|299799636|gb|ADJ50011.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] Length = 205 Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 32/220 (14%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + TRL+ ++ ++ + + S T +++ DL G + Sbjct: 18 RRTRLIRRWLAVGLLVLGAVFLIHPGSARGAPT--------------VLAAHDLPSGATL 63 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + +E G + + +DG L+ + G+P+ +L + Sbjct: 64 GAADVRLADLSDEARPTGVLST------LDAVDGRLLAGAVRAGEPLTDVRL-----ATV 112 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 + G + ++ AV +++P VDVV +V+ + V+ + H Sbjct: 113 PAPADPGTATVPVRLADV-AVAALLRPGQRVDVVAAPEP---AAPASVLAAGATVVTVGH 168 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + L G L L A + A +++ LR Sbjct: 169 QEPA---TLKGPLVLLRLPEAAATRVAAISLERPVTVTLR 205 >gi|222530414|ref|YP_002574296.1| hypothetical protein Athe_2455 [Caldicellulosiruptor bescii DSM 6725] gi|222457261|gb|ACM61523.1| conserved hypothetical protein [Caldicellulosiruptor bescii DSM 6725] Length = 194 Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 29/219 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK I ++ + A++ +++ +S I + ++K + G + Sbjct: 1 MKNR---VIKLAVIPAVLVALLSYIFISRQ------------TNMIQIPVAKNLIHQGEI 45 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + N + ++ P + G I + ++L G V + GD + + Sbjct: 46 INDNDITFLKLPSYALPRGVIKE------KEKLVGKRAGVTRVAGDFFYDDVI-----KT 94 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 + + + + ++I + I + ++ S S V V + Sbjct: 95 VYVQVYEDETLICVNIPEP--LTQFITEGTKL-IIATTSTSNSGVPPFAVEDAEVVSLLS 151 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 ++ A +++ QA L A ++V Sbjct: 152 KTTNNMVSGSNTRYAIVKVKKDQAVQLAYALKNGDYTVV 190 >gi|296128692|ref|YP_003635942.1| SAF domain protein [Cellulomonas flavigena DSM 20109] gi|296020507|gb|ADG73743.1| SAF domain protein [Cellulomonas flavigena DSM 20109] Length = 235 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 21/176 (11%) Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 D+ G +T + L V P G A + G + V + P+ Sbjct: 74 AHDVPAGTALTAHDLVLVDVPVGTAPGGAFR------APDDALGQVPAVDLPARLPLTPS 127 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171 L D G P G + + AV ++ P H+D+V R V Sbjct: 128 VLADAQLAG-----PDGTVVVAVRLDDP-AVAALLAPGLHLDLVAAR---LEGGPGETVA 178 Query: 172 SNIRVIAIDHNIDSDER------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 V + V V + + +TP +A + A ++L V+ Sbjct: 179 RRALVRSAPGVAPEGGGLLGAPAVDVAAPVLVAVTPQEAVRIAEASVSSRLVAVVV 234 >gi|51891538|ref|YP_074229.1| hypothetical protein STH400 [Symbiobacterium thermophilum IAM 14863] gi|51855227|dbj|BAD39385.1| hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 203 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 55/183 (30%), Gaps = 18/183 (9%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 + V +++ ++ G + +L+ V + A DG Sbjct: 33 VAAGSGTEIVWVARREILPGTQLKEEMLQRVEVDGPTRQLLA-REALPRTASDTPDGWYA 91 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 I G+P+ V P+ R ++ ++P + VD+ +V Sbjct: 92 TRAIRPGEPLIPAGNVSPVPPSADVTPPEALRVVSLRTEWVG--PPELQPTEEVDLYVV- 148 Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 +L+ RV+ ++ + Q ++AA + + Sbjct: 149 ---TGDGEALRILTGARVV-----------QAESDRVSVLVPEEQVPLVIAAADGVTVKV 194 Query: 219 VLR 221 V R Sbjct: 195 VRR 197 >gi|167038605|ref|YP_001666183.1| SAF domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116994|ref|YP_004187153.1| SAF domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857439|gb|ABY95847.1| SAF domain [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930085|gb|ADV80770.1| SAF domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 181 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 63/181 (34%), Gaps = 30/181 (16%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 I ++ + A V+ + + K V+I + D+ G V++ + ++ Sbjct: 4 IIKIALITAAVSAAFMLVFMQNIQ------------KTEKVVIVEKDIPAGTVISEDAVK 51 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127 V P V + ++ + G +V+ ++GD I +E L + S L Sbjct: 52 VVDVPASAVKPNYAR------SLSNVVGKVVKEGRVRGDFIPVEILTSKD----SQPLGP 101 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE 187 T+ ++ ++ D V ++ + VL +VI++ Sbjct: 102 DHAVMTVSVTSVE--AKTLQSGDTVSFIVFDQTGSK------VLDGFKVISVVKEDSDKA 153 Query: 188 R 188 Sbjct: 154 S 154 >gi|29826723|ref|NP_821357.1| hypothetical protein SAV_183 [Streptomyces avermitilis MA-4680] gi|29603819|dbj|BAC67892.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 234 Score = 51.3 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 25/223 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + ++ + ++ + A AG+ + L V+ D+ VG V+ Sbjct: 35 RRPGVIALSLALIAAGGAGVAVLLL--------------QVGHRTEVVTVARDVQVGQVL 80 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L + + + + + G V + G + ++ + Sbjct: 81 SEEDLGKASIALDPA-----VKAVRAGDLDSVVGKRAAVELRPGSLLAPSQVTED----- 130 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 SL+ G++ + + + P V++V V + + LS + Sbjct: 131 -SLVKAGEQLVPIGLKSEQVPATALVPGQKVELVHVPAQGVEDTGKSSGLSPRTIAGRVV 189 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 + + A S L LVL + Sbjct: 190 KASGAAPGSGVVVVDVATSADDGPIAAAWVSAGTLRLVLAAPD 232 >gi|295837162|ref|ZP_06824095.1| membrane protein [Streptomyces sp. SPB74] gi|295826378|gb|EFG64805.1| membrane protein [Streptomyces sp. SPB74] Length = 241 Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 69/192 (35%), Gaps = 19/192 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 N ++V+ + D+ G ++ V E+ I + +R Sbjct: 54 NAGDRVSVVRTTKDVPAGGTLSRENTTDVLVAEDE----SIHYLRWDQIDLAKSKYKLRS 109 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS- 159 + +G + E L+ + S++ +GK + + GG +KP D V V V Sbjct: 110 ALPQGSLVVGEMLIGKDK----SVVDQGKALVGLALKEGQYPGG-LKPGDTVAVYHVGKD 164 Query: 160 -------LSERKPTVTVVLSNIRVI--AIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210 S +LS + A + + T T+ + +A+AL A Sbjct: 165 AGAPAAGESGSSGGDRTLLSAAADVKDADGSSKGGEALSTGDRTLTVSVPAGEAQALAQA 224 Query: 211 QSVAKLSLVLRS 222 SV ++++VL Sbjct: 225 SSVGEVAVVLVP 236 >gi|307265038|ref|ZP_07546599.1| SAF domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920023|gb|EFN50236.1| SAF domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 181 Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 26/173 (15%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++R++ I + A ++ +N K V++ + D+ G V++ Sbjct: 1 MSRIIKIALITAAVSAAFMLVF--------------MQNIQKTEKVVVVEKDIPAGTVIS 46 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + ++ + P V + ++ G +V+ +KGD I +E L + LS Sbjct: 47 EDAVKVIDVPASVVNPSYARSPA------DVVGKVVKDGRVKGDFIPVEILTSKDAQPLS 100 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 + T+ ++ ++ V ++ + V+S IR Sbjct: 101 ----PDRAVMTVPVTSVE--AKTLQSGSTVSFIVFDQTGSKVIEGFKVISVIR 147 >gi|329930829|ref|ZP_08284228.1| SAF domain protein [Paenibacillus sp. HGF5] gi|328934531|gb|EGG31036.1| SAF domain protein [Paenibacillus sp. HGF5] Length = 367 Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 55/178 (30%), Gaps = 31/178 (17%) Query: 2 KLTRLMGIVVSGVF---ALVAGIIAMRLVSPHH-------------VQTEEVITENPAKF 45 + +L+ ++G A+ AG + + + EE + Sbjct: 7 RSRKLIFAGLAGAAVTGAVCAGAMLYYVHGSKEQRHVERTQYEQRIAELEETQLQQLNSM 66 Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 + D+ G + ++ V P + + + +E+ G ++ +L+G Sbjct: 67 QVAWVPVRDIPPGHFIEAKDIKEVRLPYDG------TSGNLFSGREEIAGKGAKIELLRG 120 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 PI L + + ++ + ++ D +DV + + Sbjct: 121 MPITGAMLFEEEPTRPDLRHRE-MKSVYLPSD--------LRKGDVIDVRVQFPTGQD 169 >gi|256374774|ref|YP_003098434.1| SAF domain protein [Actinosynnema mirum DSM 43827] gi|255919077|gb|ACU34588.1| SAF domain protein [Actinosynnema mirum DSM 43827] Length = 191 Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 18/124 (14%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 VL++ DL G+ + + V P +G + A + G + Sbjct: 23 PDPATTTVLVAARDLPPGVALAREDVRAVELPPGVAPEGVV-------AAEVAVGRALVS 75 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 G+P+ +L AA++ + G+++ VDVV V L Sbjct: 76 TARAGEPLTDARLTGVDPE-----------AASVAVRFDPVTAGLLRTGSRVDVVGVGRL 124 Query: 161 SERK 164 Sbjct: 125 GSTG 128 >gi|146296447|ref|YP_001180218.1| hypothetical protein Csac_1426 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410023|gb|ABP67027.1| hypothetical protein Csac_1426 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 194 Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 73/219 (33%), Gaps = 29/219 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK I ++ + A++ +++ +S I + ++K + G + Sbjct: 1 MKNR---VIKLAVIPAVLVALLSYIFISRQ------------TNMIQIPVAKNFIHQGEI 45 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + ++ P + G I + ++L G V + GD + + Sbjct: 46 IDDSDITFLKLPSYALPQGVIKE------KEKLVGKRAGVTRVAGDFFYDDVI-----KT 94 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 + + + + ++I + I + ++ S S V V + Sbjct: 95 VYVQVYEDETLICVNIPEP--LTQFITEGTKL-IIATTSTSNSGVPPFAVEDAEVVSLLS 151 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 ++ A +++ QA L A + +++ Sbjct: 152 KTTNNIVSGSNTRYAIVKVKKDQAVQLAYALKGGEYTVI 190 >gi|258510599|ref|YP_003184033.1| SAF domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477325|gb|ACV57644.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 261 Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 53/158 (33%), Gaps = 23/158 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + + + + VA + ++ H + + ++ + Sbjct: 1 MAMVSKATMGLGLLGIGVAVWLDWMVLERAHA------------TVEIPVASQTILPYTT 48 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +TP+ + W P V + + G L + + GDPI +L +G+ Sbjct: 49 ITPSDITWKQVPRAAVPSDLVTNP---------VGRLTVLGVAAGDPIESSELAAQGSLQ 99 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 + + +++S S + + P V +V+ Sbjct: 100 -AYAASQNDVLVPVNVSPSP-ITEAVTPGATVTLVVNG 135 >gi|21234163|ref|NP_639740.1| hypothetical protein SCP1.167 [Streptomyces coelicolor A3(2)] gi|13620649|emb|CAC36688.1| putative membrane protein [Streptomyces coelicolor A3(2)] Length = 227 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 62/220 (28%), Gaps = 29/220 (13%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R + + V A++ + A V+ + VL D+ G + Sbjct: 29 RERRWSVVALCIVLAVICALTAAWAVNSASDR------------TRVLALARDVPAGQAL 76 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T + + + G V + KG + L Sbjct: 77 TSADVTVAEVSADAALS-----PLPATDKSSVVGKRTAVDLRKGGLLLASHLAPGSG--- 128 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 L + + I A G + P D V V + + P +ID Sbjct: 129 ---LGDDQEQVGVQIKRGMAPAGTLAPGDKVKAVTTPAEGDDLPKTGGTAPE----SIDA 181 Query: 182 NIDSDERVLVGSTAT--LELTPMQAKALVAAQSVAKLSLV 219 + S R T L + + L ++ +++LV Sbjct: 182 TVISVSRPDASGTVVVNLAVGTDEGPILATRAALNRVALV 221 >gi|269217390|ref|ZP_06161244.1| Flp pilus assembly protein CpaB family protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269213171|gb|EEZ79511.1| Flp pilus assembly protein CpaB family protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 195 Score = 50.5 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 66/181 (36%), Gaps = 24/181 (13%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M + V+ + +L A + +R ++P ++V+++K DL G + + L Sbjct: 1 MLLAVAVLTSLAAILSTIRGLAP--------------ATVSVVVAKKDLTPGTALGSSNL 46 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 E +G ++++L+ ++ + KG P+ + + + P Sbjct: 47 TIAEVSAELAPEGLTR------SLEDLNERVLITSVPKGAPVTRKM---TLSDDFLASAP 97 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186 +G A + ++ ++ P V + + ++ ++ + +S Sbjct: 98 EGTEIAPV-VADVGGADKLLTPGRTVALYAPPGEHSKAREAVKIVDKATIVGVGPKNEST 156 Query: 187 E 187 Sbjct: 157 S 157 >gi|119961944|ref|YP_948401.1| hypothetical protein AAur_2686 [Arthrobacter aurescens TC1] gi|119948803|gb|ABM07714.1| conserved hypothetical protein [Arthrobacter aurescens TC1] Length = 214 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 68/207 (32%), Gaps = 29/207 (14%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + I V V A ++G+IA+ + + V ++ D+AVG VVT L Sbjct: 22 LLIGVLLVLASISGVIALVGTAD--------------RTTQVYTAREDIAVGQVVTEADL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 V ++V ++ + +G + + K + E L Sbjct: 68 SIVKVRLDDVESSYVTVENGV-----AEGKVALQRVAKNQLVPQESLGVPDAL------- 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186 ++ + V + P VDV + S +L IA+ + Sbjct: 116 -NRKPVAIATEEELPVQAV--PGARVDVWIAMPGSNSAFDEPQLLLPSAEIALMTPGSTA 172 Query: 187 ERVLVGSTATLELTPMQAKALVAAQSV 213 + + +T Q L+ AQ+ Sbjct: 173 FGSAKTTVVMVLVTDEQMPKLLWAQAN 199 >gi|38233457|ref|NP_939224.1| hypothetical protein DIP0860 [Corynebacterium diphtheriae NCTC 13129] gi|38199717|emb|CAE49377.1| Putative membrane protein [Corynebacterium diphtheriae] Length = 227 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 46/182 (25%), Gaps = 14/182 (7%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + VL + G V P+ + + + + Sbjct: 31 ALALAVFPRTESTTEVLRYATAVEAGTAVNRTHFTTAHVPQHLIPENALRPDDLLASAPN 90 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSS--LLPKGK----RAATMDISISSAVGGMI 146 + G +D + S LP G+ + + +V ++ Sbjct: 91 E--RITISAHTAGSIATAVDFLDSSHTLSSVGNQLPFGEDQPINIVPIRL-AEQSVSRVV 147 Query: 147 KPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKA 206 +P D VDV+ + VI + + + L QA+ Sbjct: 148 QPGDVVDVIAANDAHDPHVVAAGG-----VIVFAPVPEKNTSSYGSDAVLIALPADQARI 202 Query: 207 LV 208 + Sbjct: 203 VA 204 >gi|332982946|ref|YP_004464387.1| hypothetical protein Mahau_2401 [Mahella australiensis 50-1 BON] gi|332700624|gb|AEE97565.1| hypothetical protein Mahau_2401 [Mahella australiensis 50-1 BON] Length = 332 Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 66/214 (30%), Gaps = 25/214 (11%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 V++ ++ M +T +++ A P V + D + G + Sbjct: 29 TKQVVVVTKEINDTMEITSDMITVKALPVSAVPGDVLTDPNAVIGKMTTVGRI------P 82 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 GD I L + + + TM+I S V I +++ +++ Sbjct: 83 GDLIPKSILAKPED----IAVKDNEVLLTMNIPSSDDVLTHINK----KILLALYGDQKQ 134 Query: 165 PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL-------- 216 P +++ + + I + + ++ AK ++ + Sbjct: 135 PP--IIVDGVEIYQIKNTVSGSSGQSQPYAI-IKTDVETAKIIMPYIASGSYKILSNKGQ 191 Query: 217 SLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 SL S AD P+ + +I + Sbjct: 192 SLPSESAADQEPAGQNTTGALSAVNSIAKISEYR 225 >gi|257793127|ref|YP_003186525.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479819|gb|ACV60136.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 261 Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 53/158 (33%), Gaps = 23/158 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + + + + VA + ++ H + + ++ + Sbjct: 1 MAMVSKATMGLGLLGVGVAVWLDWMVLERAHA------------TVEIPVASQTILPYTT 48 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +TP+ + W P V + + G L + + GDPI +L +G+ Sbjct: 49 ITPSDITWKPVPRAAVPSDLVTNP---------VGRLTVLGVAAGDPIESSELAAQGSLQ 99 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 + + +++S S + + P V +V+ Sbjct: 100 -AYAASQNDVLVPVNVSPSP-ITEAVTPGATVTLVVNG 135 >gi|156741665|ref|YP_001431794.1| SAF domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156232993|gb|ABU57776.1| SAF domain protein [Roseiflexus castenholzii DSM 13941] Length = 336 Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 82/276 (29%), Gaps = 71/276 (25%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVG--MVVTPNILEWVAFPEENVFDGFIDDVHQ 86 P T P V+ ++ D+ + T +L PE + Sbjct: 30 PAPETTALPQEPTPVPLRKVVAARVDIPANTVLTDTETLLTLRDIPE---PEYNAAPDQY 86 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP-------KGKRAATMDISIS 139 ++ EL + + + IR L + GLS +P + +++ Sbjct: 87 FTSVGELTTKVTLRALNATEIIRARDLT---DAGLSFQVPPPDTIDAPRNKVFPLEVGNL 143 Query: 140 SAVGGMIKPNDHVDVVMVR-------------------------SLSERKPTVTVVLSNI 174 + V I+P D VD+VM + ++ N+ Sbjct: 144 TGVADQIRPGDSVDLVMTYEIRRLIIRPSLTTDPETGQLVVTPIEETLVDRVTKTMVQNV 203 Query: 175 RVI-----AIDHNID-------SDERVLVGSTA---------------TLELTPMQAKAL 207 +V+ AI + E S+A L +T +A+ + Sbjct: 204 QVLRVLKPAIPQDTGTPTPGGAQGEPAPPPSSAQQQGDTYVPGAQWILLLAMTDQEAEIV 263 Query: 208 --VAAQS--VAKLSLVLRSIADLNPSSSEDSDVWDV 239 Q +++LVLR D + + + + Sbjct: 264 KFTLDQQDPKPQITLVLRGRDDGDIEETTGITLRLL 299 >gi|325982376|ref|YP_004294778.1| flagella basal body P-ring formation protein FlgA [Nitrosomonas sp. AL212] gi|325531895|gb|ADZ26616.1| flagella basal body P-ring formation protein FlgA [Nitrosomonas sp. AL212] Length = 249 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 26/137 (18%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + NVL + +A G ++T + + +G + D + G + Sbjct: 117 VQAEINVMSNVLHTARPIATGQIITNEDIAPQNTNLTQLPEGILTDASL------IVGKV 170 Query: 98 VRVPILKGDPIRLEKLVDRG--------------------NGGLSSLLPKGKRAATMDIS 137 + G P+R + L + G + + + Sbjct: 171 AATNLPAGQPLRPQMLRAPYVILRGQTVSLVVQGRGFNIQSEGQALADAADGQVIQVRNK 230 Query: 138 ISSAVGGMIKPNDHVDV 154 V G+ +PN V++ Sbjct: 231 SGRIVSGLARPNSIVEI 247 >gi|229587502|ref|YP_002860540.1| SAF domain family [Clostridium botulinum Ba4 str. 657] gi|229260297|gb|ACQ51334.1| SAF domain family [Clostridium botulinum Ba4 str. 657] Length = 208 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 70/196 (35%), Gaps = 30/196 (15%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + +++ V G+ L + +N + V++ K D+ G ++T Sbjct: 1 MKKILKFGVIGILFLFVLFYIIL--------------KNVSGTTKVIVLKNDINKGKIIT 46 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 +E +NV + + +++ G ++V L+ D I + + G + Sbjct: 47 EQDVETKEISNKNVLPDIVLN------QKDIVGKSLKVDRLQNDFIPKKII-----GDTA 95 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 L + T+ + +I D + + ++ + S P ++ ++ + +I+ Sbjct: 96 IKLKSNEVLLTIFMPRED--AKLISTGDEIALALIENNSNEHPQ---IIKDLIITSIEEL 150 Query: 183 IDSDERVLVGSTATLE 198 + + + Sbjct: 151 PKKENDDNANNKVLVA 166 >gi|169834850|ref|YP_001715940.1| SAF domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169408957|gb|ACA57367.1| SAF domain family [Clostridium botulinum A3 str. Loch Maree] Length = 208 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 67/196 (34%), Gaps = 30/196 (15%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + +++ + G+ L + +N + V + K D+ G ++T Sbjct: 1 MKKILKFGIVGILFLFTVFYIIL--------------KNVSGTTKVAVLKNDINKGKIIT 46 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 +E +NV + +++ G ++V L+ D I + + G S Sbjct: 47 EQDVETKEISNKNVLPDIVLSP------KDIVGKSLKVDRLQNDFIPKKII-----GDTS 95 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 L + T+ + +I D + + ++ + + P ++ + + +I+ Sbjct: 96 IKLKSNEMLLTIFMPRED--AKLISTGDEIALALIENNANENPQ---IIKGLIITSIEEL 150 Query: 183 IDSDERVLVGSTATLE 198 + + + Sbjct: 151 PKKENDDSTNNKVLVA 166 >gi|307327609|ref|ZP_07606794.1| SAF domain protein [Streptomyces violaceusniger Tu 4113] gi|306886721|gb|EFN17722.1| SAF domain protein [Streptomyces violaceusniger Tu 4113] Length = 228 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 61/218 (27%), Gaps = 25/218 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R + V A++ G+ A V+ + VL D+ G + Sbjct: 30 RERRWSVAALCVVLAVLCGLGAAAAVTSASDRK------------QVLAVARDVPAGQAL 77 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T L V + G V + KG + +L Sbjct: 78 TAADLSVAE-----VSSDAALTPVPAADKAGVIGKRPAVDLRKGGLLTTSQLAGGTG--- 129 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 L ++ + I A G + P D V V + + + + A+ Sbjct: 130 ---LGDDQQQVGVQIKRGQAPAGTLAPGDKVLAVSTPAQGDEQAAKDDGPPSTIEAAVVS 186 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 D V L + L ++ +++LV Sbjct: 187 VSRPDASGTVV--VNLAVAATDGPTLATRAAMGRIALV 222 >gi|269955647|ref|YP_003325436.1| SAF domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269304328|gb|ACZ29878.1| SAF domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 218 Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 57/177 (32%), Gaps = 17/177 (9%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +L+ D+ G V+ L + + ++ ++ G V + G Sbjct: 57 EILVLVDDVPRGSVIEAGDLGVATLNADPL-----LKPVPASSRDDVVGKRAAVDLSAGS 111 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 L+ + G+ ++++ + A G ++ D V VV Sbjct: 112 ------LLTPTSTTDEMRPAAGRSLVPIELTPAQATGLGLQVGDAVKVVDTPEARAEN-V 164 Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 ++ V I + +LE+ +A L A + ++LVL S Sbjct: 165 GNPASTSALVALIGV-----TERTGATVVSLEVPSTEAGVLAARIATGNVALVLESR 216 >gi|315501061|ref|YP_004079948.1| saf domain protein [Micromonospora sp. L5] gi|315407680|gb|ADU05797.1| SAF domain protein [Micromonospora sp. L5] Length = 222 Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 70/219 (31%), Gaps = 25/219 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R + ++ + + G+ A V+ L + VG + Sbjct: 25 RRVRPGLLGLAVLLIALGGLGAAFAVTSVRS------------TGTYLAVARPVDVGHQL 72 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T + L V V G + M E+ G+ V + G + +L + Sbjct: 73 TADDLVPVR-----VSGGRELQPVPADRMDEVLGLRAAVRLTPGTLLTPAQLTE------ 121 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 + LL G++ + + + P D V +V S + + R Sbjct: 122 APLLGPGQQQIALGLEPEQVPARKLHPGDKVLLVSTPSNATGGGSEASRGGGTR--FEGT 179 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ID+ L L A+VA + +++LVL Sbjct: 180 VIDTAAPQNGDVVVYLALAVRDVPAVVALAADDRIALVL 218 >gi|152967638|ref|YP_001363422.1| SAF domain protein [Kineococcus radiotolerans SRS30216] gi|151362155|gb|ABS05158.1| SAF domain protein [Kineococcus radiotolerans SRS30216] Length = 224 Score = 49.0 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 18/160 (11%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ DL VG V+ P + V P E + DG +D L G ++ P+ +G+ + Sbjct: 56 LVAVRDLPVGAVLGPGDVREVQRPGETLPDGLLDR-------TRLTGAVLAGPVRRGEVL 108 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--ERKPT 166 + + + + P G A T+D+ + + G + P HVDV+ Sbjct: 109 TDAR---AADASVLTGQPAGTLAVTVDVGDPAVLAG-LGPGVHVDVLARTEDPLTGAATG 164 Query: 167 VTVVLSNIRVIAI-----DHNIDSDERVLVGSTATLELTP 201 + +++ V+ + + ++ + + P Sbjct: 165 AERIATDVVVLRVPPARTATGLLGGTPGSSATSVLVAVEP 204 >gi|167006303|ref|YP_001661526.1| membrane protein [Streptomyces sp. HK1] gi|166162385|gb|ABY83506.1| membrane protein [Streptomyces sp. HK1] Length = 228 Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 24/199 (12%), Positives = 52/199 (26%), Gaps = 12/199 (6%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 + +++ + + V+ D+ G +T L + Sbjct: 37 VALCVVLAVLAGLGAAAAVTSASDRTKVIAVAQDVPAGQALTDADLTIAEVSADAA---- 92 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 + G V + KG + L L K+ + + Sbjct: 93 -LTPVPAAEKGSVVGKRPAVDLRKGSLLISSHLASGTG------LGDDKQQVGVQVKKGQ 145 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELT 200 A G + P D V V + E+ + + A+ S L + Sbjct: 146 APSGTLAPGDKVLAVTTPAQGEQTSSKEAEAPPSTIDAV-VVTVSRPDASGTVVVNLAVN 204 Query: 201 PMQAKALVAAQSVAKLSLV 219 L + ++++V Sbjct: 205 SGDGPLLATRAAQGRIAVV 223 >gi|119025306|ref|YP_909151.1| hypothetical protein BAD_0288 [Bifidobacterium adolescentis ATCC 15703] gi|118764890|dbj|BAF39069.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 266 Score = 49.0 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 24/162 (14%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 + AL AG+ + ++++ ++A G +T +E P Sbjct: 58 LAALCAGLTVFATLQ---------CVRAAIATQPIVVAVRNVAKGTAITREDVELREAPS 108 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAAT 133 + + + G++ +V I D + S ++P+G + Sbjct: 109 DGSLSNAFHT------LDDAVGLIAQVGIGAHDVLMSGM------ARASPVVPQGHTSIE 156 Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 + ++ +V G + P D V + + T ++++ Sbjct: 157 VRLA---SVAGGLIPGDKVTLSSATMTDAEMQSGTPNVADMP 195 >gi|119715775|ref|YP_922740.1| SAF domain-containing protein [Nocardioides sp. JS614] gi|119536436|gb|ABL81053.1| SAF domain [Nocardioides sp. JS614] Length = 230 Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 76/216 (35%), Gaps = 29/216 (13%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 + +F ++A ++A + VL + G V+ + L V Sbjct: 40 AGAVLFVVMAVLLAGWFWQQKSDREA------------VLAIDHSVPAGAVIAKDDLRIV 87 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 +D Q + G V +++G + + + + L G+ Sbjct: 88 EV-------AGVDSTISSEDAQTVIGSTAAVGLVEGQILTPDMVTSKP------LPGPGE 134 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189 R + + + A G++ P D VV++ P+ L + V+A + S + V Sbjct: 135 RVVGLQLDATRAPTGLL-PGDV--VVVIAVPPAGDPSSPAELDDPTVLAPQATVASADVV 191 Query: 190 LVGST-ATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 T TL + A+ + A + +++LV I Sbjct: 192 EGAGTRLTLVVPEAVAERVTAYVAAGRVALVQAPIG 227 >gi|308177877|ref|YP_003917283.1| hypothetical protein AARI_20920 [Arthrobacter arilaitensis Re117] gi|307745340|emb|CBT76312.1| conserved hypothetical membrane protein [Arthrobacter arilaitensis Re117] Length = 221 Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 62/198 (31%), Gaps = 24/198 (12%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 AL A ++ + ++ E + V ++ ++ +G +T ++ Sbjct: 28 LALGAVLVIASVAGTVYLVGELH------QTSTVYVASSNITLGEQLTAENMKTQEVQLG 81 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATM 134 + + ++ I G+ I + + + G + Sbjct: 82 DTLENYLHVDMPVGQE-----ARANTFISAGELIPVTSITNSALGSRR----------PI 126 Query: 135 DISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVIAIDHNIDSDERVLVG 192 ++ + + + I P VDV + + S + S + V A G Sbjct: 127 NVELPADLSSSITPGSFVDVWIAKRESSGNTYEVPEKLSSMVEVAAR-VESGGGLVGTHG 185 Query: 193 STATLELTPMQAKALVAA 210 + L + P Q + L+ A Sbjct: 186 TNLELLVEPNQLEPLLQA 203 >gi|15679046|ref|NP_276163.1| hypothetical protein MTH1028 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622131|gb|AAB85524.1| unknown [Methanothermobacter thermautotrophicus str. Delta H] Length = 441 Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 81/252 (32%), Gaps = 40/252 (15%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLI---SKGDLAVGM 59 T + +V + ++AG LV + +T + ++ L D Sbjct: 117 RTIIGALVFGLIILVLAGAGYYFLVYQPYQETLQNAKATKIAEVDALFKGPLATDPQKQA 176 Query: 60 VVTPNILEWVAFPEENVFDGFI---------DDVHQPNAMQELDGVLV----------RV 100 ++ PEE + + Q N ++ G ++ RV Sbjct: 177 ILAQIDAAVT--PEEALAVDVVGPATQSWRTYQNQQINIKKDRVGRVMVNYTDNNQEKRV 234 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 + D + D + + A + I+ A GG+I D VDV + ++ Sbjct: 235 IMKVDDAKKFVSQADATVLANTQIQTPDTVAVPIMITRLQAAGGLISVGDMVDVYLNQNA 294 Query: 161 SERKPTVTVV---LSNIRVIAIDHNIDS---DERVLVGSTATLE----------LTPMQA 204 + + +S V+AI + DS D R+L TL + Sbjct: 295 TGNNTSAATSTPRISGATVLAILRSKDSGAVDARILNTQRLTLNSITSQSENERASSTDV 354 Query: 205 KALVAAQSVAKL 216 + L+ A + L Sbjct: 355 EQLLRAAASGGL 366 >gi|302559129|ref|ZP_07311471.1| membrane protein [Streptomyces griseoflavus Tu4000] gi|302476747|gb|EFL39840.1| membrane protein [Streptomyces griseoflavus Tu4000] Length = 242 Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 5/185 (2%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 I V+ + G VT + V E+ + + Sbjct: 58 QAGDRIEVVKITEPIPAGQPVTDSNTTSVMVAEDPGIHYVEWSQLDALKKLKAVSAIPAG 117 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA---VGGMIKPNDHVDVVMV 157 + G+ E V G + L +G+ A ++ A VGG + D Sbjct: 118 VVAVGEMFGDEAKVPSGKALVGMSLKEGQYPAGLESGDVVAAYRVGGTSRSGS--DDDAG 175 Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 S + ++++ RV + D TL + +A L A S +++ Sbjct: 176 TGGSAGGGSDSLLVEQARVDFVQAGKSDDIVSSANKPVTLLVDSAEAAVLTQAASNGEVA 235 Query: 218 LVLRS 222 LVL Sbjct: 236 LVLVP 240 >gi|310642358|ref|YP_003947116.1| saf domain protein [Paenibacillus polymyxa SC2] gi|309247308|gb|ADO56875.1| SAF domain protein [Paenibacillus polymyxa SC2] Length = 325 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 20/176 (11%), Positives = 51/176 (28%), Gaps = 29/176 (16%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL------------ 49 + + + + A + G+I + + + Q E+ + + Sbjct: 5 RKSSKQKLSAGCIGAGIVGMIFVSYLILNTHQMSEIRKQAEVEAEQKWKLYEQEQRTAKT 64 Query: 50 --ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 D++ G +T N L+ + P + + E+ G ++ + KG Sbjct: 65 GWAVVRDISPGEQITSNDLKGIKVPGSQAPSNLLAN------KNEVSGTTAKIELKKGSV 118 Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 + + + K + +K D VD+ + + Sbjct: 119 LTSAMITANEPTPKDLRNRELKVVV---------LPSSLKSGDEVDIRIQFPTGQD 165 >gi|325295400|ref|YP_004281914.1| flagella basal body P-ring formation protein FlgA [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065848|gb|ADY73855.1| flagella basal body P-ring formation protein FlgA [Desulfurobacterium thermolithotrophum DSM 11699] Length = 321 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 I+ D+ G ++T + ++ P + I ++ E+ G + + I KG+ I+ Sbjct: 200 IAVKDIPKGKLITYSDVKIEKVPSKKARKSAI-------SLNEVIGKIAKRDIKKGEVIK 252 Query: 110 LEKLVDRG 117 + L Sbjct: 253 ITDLSPNY 260 >gi|302864767|ref|YP_003833404.1| SAF domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302567626|gb|ADL43828.1| SAF domain protein [Micromonospora aurantiaca ATCC 27029] Length = 222 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 70/219 (31%), Gaps = 25/219 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R + ++ + + G+ A V+ L + VG + Sbjct: 25 RRVRPGLLGLAVLLIALGGLGAAFAVTSVRS------------TGTYLAVARQVDVGHQL 72 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T + L V V G + M E+ G+ V + G + +L + Sbjct: 73 TADDLVPVR-----VSGGRELQPVPADRMDEVLGLRAAVRLTPGTLLTPAQLTE------ 121 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 + LL G++ + + + P D V +V S + + R Sbjct: 122 APLLGPGQQQIALGLEPEQVPARKLHPGDKVLLVSTPSNATGGGSEASRGGGTR--FEGT 179 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ID+ L L A+VA + +++LVL Sbjct: 180 VIDTAAPQNGDVVVYLALAVRDVPAVVALAADDRIALVL 218 >gi|326330144|ref|ZP_08196455.1| putative membrane protein [Nocardioidaceae bacterium Broad-1] gi|325951957|gb|EGD43986.1| putative membrane protein [Nocardioidaceae bacterium Broad-1] Length = 223 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 29/223 (13%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + ++ L A A + + VL+++ + + Sbjct: 29 RRRPIHVVLALIGICLGAIGAAWAWSATTN-------------TEEVLVARTTIERWSTI 75 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + +E V + + ++ G V I G L+ + Sbjct: 76 EASDIERVR-----ISSDAALTPVPASDYNKIVGTRAAVDIAAG------GLLTPESTTS 124 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 P GK + ++ + A ++ D V V++ + P + V++ Sbjct: 125 DGFPPTGKSIVGVSLTAAQAPATALRGGDPVRVIVTPTEGSEAPAGAPQFTEAEVVS--- 181 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 + + + A AL A + ++LVL S A Sbjct: 182 --SHVDEASGQLVVNVLVPYADAPALAARAATGNVALVLDSAA 222 >gi|328905816|gb|EGG25592.1| SAF domain protein [Propionibacterium sp. P08] Length = 239 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 61/222 (27%), Gaps = 30/222 (13%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + RL+ I V G + H Q VL+ + G +V Sbjct: 48 RSPRLIVIGVLCACLGGLGGAVAWHRASHADQ--------------VLVMTRAVGQGEIV 93 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + + + + ++ G V + G + + + Sbjct: 94 RNTDIGLTSVAVDRAVATI-----PADQLDKIVGRHALVDLSSGQLLGSHSVGE------ 142 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 + G+ + ++ + HV VV + + + V+A Sbjct: 143 -LRVAPGRSRVGLRLAAGRLPTVSLPAGSHVTVVETSPDKDTGTVSQLSTVDAVVVAAPK 201 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 +E+ A L S+ ++++V R Sbjct: 202 ATGDHSSW----LVDVEVDSGDAARLADLASLDRIAVVERGR 239 >gi|302668530|ref|YP_003832978.1| SAF domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302397494|gb|ADL36396.1| SAF domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 314 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 26/162 (16%) Query: 1 MKLTR--LMGIVVSGVFALVAGIIAMRLVS-----PHHVQTEEVITENPAKFINVLISKG 53 M+ + L+ ++ V ++AG IA+ V Q +E+ E A + V ++K Sbjct: 1 MRKNKFKLIISILVAVLIILAGCIAIIYVGKKTLDEKKAQIDELQYEIDANKLVVYVAKN 60 Query: 54 DLAVGMVVTP-NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK 112 D++ G + + + ++ D G + + I +PI + Sbjct: 61 DISAGETLVDGENIMKQEIFTGLESEYYLSDSE--------VGGIAVLDIKALEPIMADM 112 Query: 113 LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + S + + R + ++ D+VDV Sbjct: 113 VT-------SLQIQQDTREYEIAVANLMTDQDE---YDYVDV 144 >gi|332671590|ref|YP_004454598.1| SAF domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340628|gb|AEE47211.1| SAF domain protein [Cellulomonas fimi ATCC 484] Length = 205 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 72/212 (33%), Gaps = 25/212 (11%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++ + + P + V+++ L G +T + + V P DG Sbjct: 9 VVTALGLGIAAAGVLGTLRPAPPETRPVVVAGLPLVAGTRLTADDVRVVDVPTRLAADGA 68 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 V E+ + V + G P+ L G G P G T+ ++ + Sbjct: 69 AARVD------EVLDRSLAVDLTPGSPLVPGVLAADGATG-----PPGTVVTTVRLAD-T 116 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST------ 194 M++P VDV+ TVV + V+ + +G+ Sbjct: 117 GAAAMLEPGRRVDVLAATP---EGGPATVVAARALVLPPPAAPGPEATAGLGTALAADAD 173 Query: 195 ----ATLELTPMQAKALVAAQSVAKLSLVLRS 222 L +TP ++ AL A + + LS V+ Sbjct: 174 HPPPVLLAVTPEESLALAGAAASSVLSAVVVP 205 >gi|289705098|ref|ZP_06501502.1| SAF domain protein [Micrococcus luteus SK58] gi|289558126|gb|EFD51413.1| SAF domain protein [Micrococcus luteus SK58] Length = 215 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 52/190 (27%), Gaps = 19/190 (10%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + + + + DL G + L V + ++ Sbjct: 36 AGVVALVASSQRTAAYWTAAEDLPPGTPIAAGDLRPVEVNLSEAGERYLSADAPAP---- 91 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 +G +V + G+ + LVD P G+R + + + + D V Sbjct: 92 -EGRMVSGTVRAGELLPAAALVDAD--------PDGRRPVGVALDEP--LPSGVGVGDRV 140 Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST--ATLELTPMQAKALVAA 210 DV + + + I T L +V A Sbjct: 141 DVWVAMPAEGGRGHADP-ARLAEALEISEVTAEQSGFGGSGTTRVQLLAPEETLPRIVDA 199 Query: 211 Q-SVAKLSLV 219 + A+++LV Sbjct: 200 KVKDARVTLV 209 >gi|258511181|ref|YP_003184615.1| hypothetical protein Aaci_1195 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477907|gb|ACV58226.1| hypothetical protein Aaci_1195 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 238 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/253 (12%), Positives = 75/253 (29%), Gaps = 30/253 (11%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + R ++ A++AG + V + + V+ +K + V Sbjct: 1 MKRSAFLLTGVGLAVIAGGLF------------AVGYKLTTDTVPVITAKTYIPADTPVN 48 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121 P+ L P F + Q L G + V + G+P+ + + + L Sbjct: 49 PSELGTEQVPRM-----FARQMGAITNEQSLAGRYLSVSAVPGEPLTMNMVATADDLQAL 103 Query: 122 SSLLPKGKRAATMDISIS--SAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 + + + + + SA+ ++P + +++ T L + V+A+ Sbjct: 104 VTQYAQAHHVHGVLVDYAANSALANAVQPGQDI----ALAINPSGQNATPELYPVHVLAV 159 Query: 180 DHNIDSDERV------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 T L + + + + +V +S + Sbjct: 160 SAPQQQSNSPLNINNNSASKTLYLFVPTSEYDRIAQSILSGSARVVFLPNPSTGTASVPN 219 Query: 234 SDVWDVQEEGKEI 246 + V + Sbjct: 220 ATVAPSSPPKVTM 232 >gi|116671247|ref|YP_832180.1| hypothetical protein Arth_2701 [Arthrobacter sp. FB24] gi|116611356|gb|ABK04080.1| hypothetical protein Arth_2701 [Arthrobacter sp. FB24] Length = 214 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 17/174 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + V +KG +AVG +T + V +V ++ G++ Sbjct: 42 AADQTTEVYAAKGPIAVGERLTAENVNRVKVRLGDVEGHYVTAEAGLPD-----GMVAVQ 96 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I + + L ++ + I A+ + VD + Sbjct: 97 RIGPDQLVPRDSLGKPDAL--------NRKPVAITIDE--ALPEQVAAGSRVDAWVALPD 146 Query: 161 SERK-PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213 + ++L + + + + + +T Q L+ AQ+ Sbjct: 147 ARNGFSEPKLLLPGAEIAEVTPGSTALGSSR-STVVMVLVTDEQMPRLLGAQAN 199 >gi|239917956|ref|YP_002957514.1| SAF domain-containing protein [Micrococcus luteus NCTC 2665] gi|239839163|gb|ACS30960.1| SAF domain-containing protein [Micrococcus luteus NCTC 2665] Length = 215 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 52/190 (27%), Gaps = 19/190 (10%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + + + + DL G + L V + ++ Sbjct: 36 AGVVALVASSQRTAAYWTAAEDLPPGTPIAAGDLRPVEVNLSEAGERYLSADAPAP---- 91 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 +G +V + G+ + LVD P G+R + + + + D V Sbjct: 92 -EGRMVSGTVRAGELLPAAALVDAD--------PDGRRPVGVALDEP--LPSGVGVGDRV 140 Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST--ATLELTPMQAKALVAA 210 DV + + + I T L +V A Sbjct: 141 DVWVAMPAEGGRGHADP-ARLAEALEISEVAAEQNGFGGSGTTRVQLLTPEETLPRIVDA 199 Query: 211 Q-SVAKLSLV 219 + A+++LV Sbjct: 200 KVKDARVTLV 209 >gi|19552105|ref|NP_600107.1| hypothetical protein NCgl0844 [Corynebacterium glutamicum ATCC 13032] Length = 184 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 24/178 (13%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ ++ G V + L A P + +++ ++ G++ + G+ Sbjct: 13 VVIVQEIPAGTKVEASDLGLQAIPTSLLPSTSY------DSIDDVVGLVAASTLSSGEIA 66 Query: 109 RLEKLVDRG------NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 + V S L + + ++ S + +++ D + VV S Sbjct: 67 TKPRFVGTELINSIATNVTDSSLVEEINMVPLSLAEPSVIP-LLQHGDTISVV---SQDP 122 Query: 163 RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + + VI ST + L A+ + A L++VL Sbjct: 123 DTGLPENIAAGGTVILAG--------GTDPSTILIALPQSIAEKVAAQSLNTPLAVVL 172 >gi|159040456|ref|YP_001539709.1| SAF domain-containing protein [Salinispora arenicola CNS-205] gi|157919291|gb|ABW00719.1| SAF domain protein [Salinispora arenicola CNS-205] Length = 219 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 28/219 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R + ++ + + G+ + V+ L + VG VV Sbjct: 25 RRMRPGLLGLAVLLIALGGLGSAFAVNAVRA------------TGTYLAVARPVEVGRVV 72 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L V V G E+ G RV ++ G + +++L D+ Sbjct: 73 NADDLVTVQ-----VAGGAGLSPVPAGQQGEVVGKRARVALVPGTLLTMDQLTDKP---- 123 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 LL G++ ++ + + + P D V +V + ++ + T VI Sbjct: 124 --LLASGQQQLSVGLESAQVPARRLHPGDKVSLVSTPAGTDDRAAATATRFAATVIDTSG 181 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + DE L L A+ A + ++++VL Sbjct: 182 TGNDDE-----LVVYLALAVRDVPAVAALVAQDRIAIVL 215 >gi|86742019|ref|YP_482419.1| hypothetical protein Francci3_3333 [Frankia sp. CcI3] gi|86568881|gb|ABD12690.1| hypothetical protein Francci3_3333 [Frankia sp. CcI3] Length = 246 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 67/209 (32%), Gaps = 27/209 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R G V+ + ++ A+ L S + + V+ LA G VV Sbjct: 27 RRRWGGAAVALLLMVLGAAGALWLSSDDARR------------VEVVALARPLARGTVVA 74 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 P L V G + A + L G V + + G + E + S Sbjct: 75 PADLAVVGVDARG---GSVRLATPATARRALVGRPVLLDLPAGTLLSPEMVG-------S 124 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 P G+ + + + ++ D V V+ + + R V+ ++R+ + Sbjct: 125 VTAPAGQVSIGVTVGPDGLPSASVRTGDAVGVLGFDTTTGR---AVVLARDVRIAEV--R 179 Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQ 211 + + L L A+ + A Sbjct: 180 PPAATGRSGDTVVYLALPERLAETVETAA 208 >gi|227548266|ref|ZP_03978315.1| SAF domain protein [Corynebacterium lipophiloflavum DSM 44291] gi|227079584|gb|EEI17547.1| SAF domain protein [Corynebacterium lipophiloflavum DSM 44291] Length = 206 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 21/175 (12%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 VL + G V+ P+ L+ FP + V D + D+ G ++ +G+ Sbjct: 48 VLAFAQPASAGDVLEPSHLQLRRFPADAVPDNALTDID------AATGQILAAAASRGEV 101 Query: 108 IRLEKLVDRGNGG--LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 + +LV + P+ + ++ + M+ V VV ++S Sbjct: 102 VTSTRLVGPDLASELVGEQAPEAFSLVPVALAEPDIIP-MLHHGATVSVV---TMSPDGA 157 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + + +V+ T L L QA A+ AA L++VL Sbjct: 158 QPRTIATGAKVVVAGAEEG---------TVMLLLPNTQAAAVAAASLATPLTVVL 203 >gi|119952317|ref|YP_949886.1| hypothetical protein AAur_pTC10012 [Arthrobacter aurescens TC1] gi|119951447|gb|ABM10357.1| hypothetical protein AAur_pTC10012 [Arthrobacter aurescens TC1] Length = 229 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 17/190 (8%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + + VL + G V+ + + G I + + G Sbjct: 56 QAQGDRVEVLEVTKPVPAGQVIKAGDVHAIQV---AGVPGAIKASD----VDTVVGQRAA 108 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 +++G + E + L G+R + + V G + D V+V+ V Sbjct: 109 SGLVEGQILTPEAVTGDP------LPGDGERLVALQL-PPGRVPGGLAAGDVVNVLAVPQ 161 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGS-TATLELTPMQAKALVAAQSVAKLSL 218 T L +V+A + S G+ T+ + + + A + ++++ Sbjct: 162 EGAAASTNQ--LQEPQVLAEGARVQSVGSTAEGNKVVTVLVKDAVSDPVAAYSAAGQVTI 219 Query: 219 VLRSIADLNP 228 V +A Sbjct: 220 VQAPLASAEE 229 >gi|257068486|ref|YP_003154741.1| SAF domain-containing protein [Brachybacterium faecium DSM 4810] gi|256559304|gb|ACU85151.1| SAF domain-containing protein [Brachybacterium faecium DSM 4810] Length = 211 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 61/174 (35%), Gaps = 13/174 (7%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 + ++++ +L G ++ L E + +G + +++ G R+PI G Sbjct: 47 VEIVVADAELTPGTALSRADLRTARIAPELLPEGAAQQI------EDVVGQTARLPIEPG 100 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 P+ L D + LP G + + A+ ++P + +++ Sbjct: 101 TPLLPGLLEDP----AAPALPSGSALMAVPV--PRALVAHLQPGTELMLLVTDPSQPSGI 154 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 V+ + ++ V + + + +A + A + +++ Sbjct: 155 AVSAQVVDVVVPENGESALGGGSAATAE-VLVAVEAARAGEVAHALGLGVVTVS 207 >gi|117928960|ref|YP_873511.1| hypothetical protein Acel_1753 [Acidothermus cellulolyticus 11B] gi|117649423|gb|ABK53525.1| conserved hypothetical protein [Acidothermus cellulolyticus 11B] Length = 236 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 61/197 (30%), Gaps = 20/197 (10%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V + DLA G ++ + L V + +L G V P+ G+ Sbjct: 59 TVWAAARDLAPGTTLSHSDLTPVKVRFRD------HGARYVAGGSDLAGWTVTRPVPAGE 112 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 I + +R + R T+ I G ++ VDV + +E Sbjct: 113 LIPRSAVSERAGTPV--------RLVTVPIERLRMPRGDVR-GALVDVYLTLRTTEGTLA 163 Query: 167 V-TVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V +V++N+ V + + A++AA L +V R D Sbjct: 164 VPQLVIANVTVADVISESSLGGSGGGLVL---RVPESMVAAVIAASRSGALDVV-RVPTD 219 Query: 226 LNPSSSEDSDVWDVQEE 242 ++ + Sbjct: 220 QATAAPRLGVLASPAGG 236 >gi|258651609|ref|YP_003200765.1| SAF domain-containing protein [Nakamurella multipartita DSM 44233] gi|258554834|gb|ACV77776.1| SAF domain protein [Nakamurella multipartita DSM 44233] Length = 214 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 71/226 (31%), Gaps = 29/226 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 +L+R V V ++ I A+ L + + ++ V + L+ G V+ Sbjct: 11 RLSRPRWFNVRVVGGILLVIAAIVLGAR--------VMAAGSQTTPVWAASRSLSAGTVI 62 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 L V + ++ A G + P+ G+ + + +G Sbjct: 63 GAGDLTAVEVNLGDQAGAYLT-----PAGDSPVGRTLVAPLGAGELLAGSAVEPTDSG-- 115 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIA 178 R ++ ++ G ++ +D+ + R + ++ ++ V + Sbjct: 116 --------RVVSIAVAPEHMPPG-VEHGATIDLYLTREANPGSAEAAITELIGRDLTVQS 166 Query: 179 IDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 + ++ L A LV + +VL S Sbjct: 167 VSAPASGGLSGATSNRYQLSVLLPADVADKLVRVLPTGEPIVVLVS 212 >gi|238750895|ref|ZP_04612392.1| tight adherance operon protein [Yersinia rohdei ATCC 43380] gi|238710809|gb|EEQ03030.1| tight adherance operon protein [Yersinia rohdei ATCC 43380] Length = 258 Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 72/234 (30%), Gaps = 38/234 (16%) Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + DL G ++T + V +A+ +D L++ IL G I Sbjct: 30 ATHDLPSGSLLTKMDYSIK---KSAVPQSSKLIKDDISAIPNIDSYLLKHNILAGSYITQ 86 Query: 111 EKLVDRGNGGLSS-LLPKGKRAATMDISISS-AVGGMIKPNDHVD--------------- 153 + LV + + L +G+ +I + ++ D V Sbjct: 87 DMLVSPDSDEFNYHNLQQGQIIYKFNIKQQDEYLLDTLQIGDVVSFQLRALEIDNNKGME 146 Query: 154 ---VVMVRSLSERKPTVTV---VLSNIRVIAIDHNID----------SDERVLVGSTATL 197 V+ S++ RK +++ +++I I + + + Sbjct: 147 NGTVIESNSMNNRKKQSYSLNEIITGVKIIRIKKHSERELSEKKYNNQKTENASAGYIDV 206 Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 + L + + L D S +++DV + + + ++ Sbjct: 207 IIKTEDLDVLHIVEKSGDIFLTPSYKPDDKE--SRARNLYDVIPKLRTTRELRG 258 >gi|145596968|ref|YP_001161265.1| SAF domain-containing protein [Salinispora tropica CNB-440] gi|145306305|gb|ABP56887.1| SAF domain [Salinispora tropica CNB-440] Length = 219 Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 80/219 (36%), Gaps = 28/219 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R + ++ + + G+ + V+ + L + VG VV Sbjct: 25 RRMRPGLLGLAVLLIALGGLGSAFAVNAVRA------------TGSYLAVARPVEVGRVV 72 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + L V V G ++ G +V ++ G + +E+L D+ Sbjct: 73 SADDLVTVQ-----VAGGAGLSPVPAGQQGDVVGKRAKVSLVPGTLLTMEQLTDKP---- 123 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 LL G++ ++ + ++ A + P D V +V + ++ + T T VI Sbjct: 124 --LLAPGQQQLSVGLELAQAPARRLHPGDKVSLVSTPAGNDDRSTTTATRFEATVIDASI 181 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + DE L L A+ A + ++++VL Sbjct: 182 VGNDDE-----MVVYLALAVRDVPAVAALVAQDRIAVVL 215 >gi|288920028|ref|ZP_06414348.1| SAF domain protein [Frankia sp. EUN1f] gi|288348592|gb|EFC82849.1| SAF domain protein [Frankia sp. EUN1f] Length = 241 Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 16/166 (9%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 +++ + I V+ LA G VTP+ L V +V + A EL G Sbjct: 59 ASDDSGRSIEVVTLTRPLARGTEVTPSDLAVVRV---DVEGSGVRLTAPAAARGELVGRQ 115 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + + G I E + S LP G + +S ++P + V V+ Sbjct: 116 ALIDLPAGTLISPEMVG-------SVALPTGTVTLGVTVSAQDLPSAAMRPGEQVSVLGY 168 Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203 + ++ + V + + + G T P Q Sbjct: 169 PLAAGG---PQLLARGVTVTEVQRPQTAGQ---PGQTVVYLQLPEQ 208 >gi|89098203|ref|ZP_01171088.1| hypothetical protein B14911_10592 [Bacillus sp. NRRL B-14911] gi|89087060|gb|EAR66176.1| hypothetical protein B14911_10592 [Bacillus sp. NRRL B-14911] Length = 326 Score = 46.3 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 18/170 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + + V ++A II V + + EV P V+ + V Sbjct: 1 MKPWLKITLGVLLSVFVIAFIIVWDTVIKDKIDSVEVAIVRPG----VV-----IEKNQV 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++ ++L + +G + D M ++ G + + + + Sbjct: 52 ISKDLLMMEQRNRATLVEGTVYD------MDDVVGYEAKQKLYGNSILSERDVEFIP--- 102 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV 170 + KG+ + S A I+ DH+D + R + V Sbjct: 103 FTPDPEKGEAIRPIPASWIYASPSTIRRKDHIDFYLFRPEGDTAKPSVNV 152 >gi|119716448|ref|YP_923413.1| SAF domain-containing protein [Nocardioides sp. JS614] gi|119537109|gb|ABL81726.1| SAF domain [Nocardioides sp. JS614] Length = 224 Score = 46.3 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 42/143 (29%), Gaps = 11/143 (7%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 VL+ D+ G + L V + + L+G V + Sbjct: 60 TQEVLVVSNDIKRGETIEAGDLAVVRVSVDPA-----LTPVPGSQKAVLEGSRAAVDLWA 114 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 G + + + D + +G+ + ++ + + D V +V Sbjct: 115 GTLLTAQAVTDN------LVPGEGESLVGVSLTPAQMPSEPLYGGDVVRIVTTPGDQGEI 168 Query: 165 PTVTVVLSNIRVIAIDHNIDSDE 187 V V+ ++ ++ E Sbjct: 169 TDEDPVTIEATVVGVNRVEETGE 191 >gi|319790433|ref|YP_004152066.1| flagella basal body P-ring formation protein FlgA [Thermovibrio ammonificans HB-1] gi|317114935|gb|ADU97425.1| flagella basal body P-ring formation protein FlgA [Thermovibrio ammonificans HB-1] Length = 321 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 7/102 (6%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71 +++ V + I + V+++ + G +TP +++ + Sbjct: 162 LVSIGNGYARFIYQVLVNGKVVKKVWIPVRIDRLEKVVVAAVLIPKGTKITPTMVKLASV 221 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 P + ++++E+ G + R IL G IR L Sbjct: 222 PSRKA-------YNAFHSVKEVVGSIARTDILSGKIIRPTML 256 >gi|184200536|ref|YP_001854743.1| hypothetical protein KRH_08900 [Kocuria rhizophila DC2201] gi|183580766|dbj|BAG29237.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 224 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 19/177 (10%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 + DLAVG +TP L V V G++ + + R ++ Sbjct: 57 PYYAAAEDLAVGQRITPEDLTTVDAHLAQVAGGYVPGGQPLQENAVVTQRVARGQLVPAA 116 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 I +DR G++ P +A P HVDV + R + + Sbjct: 117 SIGTADALDRTPVGIALQTPLPAQA---------------DPGAHVDVWVARPKTSGRGF 161 Query: 167 VTV--VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA-QSVAKLSLVL 220 + ++ + +D D+ G T + +TP Q LV A + AK++LVL Sbjct: 162 MEPKKLVPGAEIARVDTK-DTALGGSGGVTVHVLVTPSQVGPLVDALGNDAKVTLVL 217 >gi|303238140|ref|ZP_07324676.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] gi|302594186|gb|EFL63898.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2] Length = 298 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 6/136 (4%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 I V+ + ++T +LE + + D + + + E+ Sbjct: 43 AKEVIEIVVVKPAEGIPAQALLTEKMLEKGKILKSDFKDKMVT----YDKVGEVLNKYSA 98 Query: 100 VPILKGDPIRLEKLVD--RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + P+ ++L + L K T+ G ++ P D+V V + Sbjct: 99 YFLRYNTPVYFDQLTETKPIRNEWLYSLSKETEVLTVPYDYDKCGGDVLMPGDYVRVRVT 158 Query: 158 RSLSERKPTVTVVLSN 173 + E + V N Sbjct: 159 QEYDENTAPSSDVGQN 174 >gi|256833186|ref|YP_003161913.1| SAF domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686717|gb|ACV09610.1| SAF domain protein [Jonesia denitrificans DSM 20603] Length = 221 Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 23/196 (11%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + V ++ LA G VV + +V+ + A E+ G VR Sbjct: 40 SPATTVVEVPVATRPLAAGEVVMAQDVSFVSV-------EVLGSPAVSFAGDEVVGAHVR 92 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 V + G+ + L S P G ++ ++ S + ++ DHV VV S Sbjct: 93 VGVGLGEVLSGAVLTQ------SPAPPDGFATVSVSVANPSVLS-VVAVGDHVAVVPRDS 145 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSD-------ERVLVGSTATLELTPMQAKALVAAQS 212 + + T VL + V A T L + QA + A Sbjct: 146 DAAQALTSHAVL--LSVSAPGEGSGGALSGVVGSADTSAPVTVLLAVPHEQATEVALAAQ 203 Query: 213 VAKLSLVLRSIADLNP 228 A++++V+ P Sbjct: 204 WAEMAIVVLPAQGNQP 219 >gi|146297616|ref|YP_001181387.1| SAF domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411192|gb|ABP68196.1| SAF domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 219 Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 15/132 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 N++++ D+ G +T + L V + E+ V I +G+ Sbjct: 41 NIIVASMDIKKGEKITQDKLALVRV-------AAPTPIPAAKNPVEVLNKYVLYDIKRGE 93 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--K 164 PI KL + +S +M I I I D V ++ V + + + Sbjct: 94 PIIPAKLTVKPPIDVSKGQ------YSMLIKIEPVPSTFIAKYDTVRLMFVSNAVDAKTQ 147 Query: 165 PTVTVVLSNIRV 176 +L ++V Sbjct: 148 KPSIQILDTVQV 159 >gi|238062116|ref|ZP_04606825.1| SAF domain-containing protein [Micromonospora sp. ATCC 39149] gi|237883927|gb|EEP72755.1| SAF domain-containing protein [Micromonospora sp. ATCC 39149] Length = 219 Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 70/213 (32%), Gaps = 29/213 (13%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 + ++ + + G+ A V+ + L + VG + + L Sbjct: 32 LLGLAVLLIALGGLGAAFAVTSVRA------------TGSYLAVARPVEVGRTLGADDLV 79 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127 V V G + ++ G+ V + G + L +L D LL Sbjct: 80 TVQ-----VAGGQGLRPVPAAQLDDVVGMRAAVALTPGTLLTLGQLTDDP------LLGP 128 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE 187 G++ +D++ + P D V +V S T VI D+ Sbjct: 129 GQQQLALDLAPGRVPAKRLHPGDRVLLVSTPDRSANGQPATSTRFEATVI------DTAT 182 Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + LT A+VA + +++++VL Sbjct: 183 PSTSSVVVYVALTARDVPAVVALAAQSRIAVVL 215 >gi|332982956|ref|YP_004464397.1| SAF domain-containing protein [Mahella australiensis 50-1 BON] gi|332700634|gb|AEE97575.1| SAF domain protein [Mahella australiensis 50-1 BON] Length = 211 Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 10/159 (6%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV-----LVR 99 +L +K + GM + +L+ + P + G + DV+ + R Sbjct: 31 TTGILTAKTTINAGMKIEETMLDTMQVPNTAIPSGAMTDVNDVIGKTAAVTRAPGDIIFR 90 Query: 100 VPILKGDPIRLEK---LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 + + +P+ E + LS+++ +G + + + ++A I D Sbjct: 91 DALSEQEPVLKENETFIAVELPESLSAMIGEGNQINLVCLGNTAAAQQPITETQPTD--Q 148 Query: 157 VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTA 195 + +E+ T V+ N+ V ++ DS + + Sbjct: 149 TAAPAEQPQENTNVIENLPVYSVITTTDSTGSNIKYAII 187 >gi|154253002|ref|YP_001413826.1| flagellar basal body P-ring biosynthesis protein FlgA [Parvibaculum lavamentivorans DS-1] gi|154156952|gb|ABS64169.1| SAF domain protein [Parvibaculum lavamentivorans DS-1] Length = 326 Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 6/138 (4%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A +R + + +T ++V + D+ G +V ++WV P V Sbjct: 157 GAFTAIVRAPAHDALSPLRRVTGRAYPVLDVPVLVRDMQPGDIVRHQDIDWVRMPANRVS 216 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137 I ++ L G+ R P G+P+RL + ++ + + + ++ Sbjct: 217 QNMIA------SIDHLVGMSPRHPARAGEPLRLSDMQPPLVVEKNAQVDMTFVSGALTLT 270 Query: 138 ISSAVGGMIKPNDHVDVV 155 D V+V+ Sbjct: 271 ARGRALQSGAVGDIVNVL 288 >gi|322514178|ref|ZP_08067243.1| flp operon protein C [Actinobacillus ureae ATCC 25976] gi|322119964|gb|EFX91966.1| flp operon protein C [Actinobacillus ureae ATCC 25976] Length = 156 Score = 45.5 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 13/149 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--------TEEVITENPAKFINVLISK 52 M L I + G+ + + Q E K I Sbjct: 1 MNYRVLFIISTFILVIGFGGLFMLPNAEDNIPQNETAAASTETTTQPEVATKVITTATLN 60 Query: 53 GDLAVGMVVTPNILEWVA--FPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 DL G ++ PE + +F + + + + L G + I G ++ Sbjct: 61 RDLTKGALIQAEDYTLSELTVPETSPLFSNDLKSLLEAATVPTLQGFVTTENIKAGSLLQ 120 Query: 110 LEKLVDRGNGG--LSSLLPKGKRAATMDI 136 E L+ + L S+ P+ + A + I Sbjct: 121 PELLITPDDPRFILFSINPQQEVAYRVYI 149 >gi|86739485|ref|YP_479885.1| hypothetical protein Francci3_0772 [Frankia sp. CcI3] gi|86566347|gb|ABD10156.1| hypothetical protein Francci3_0772 [Frankia sp. CcI3] Length = 257 Score = 45.5 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 27/194 (13%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + +++K DL G ++ L V+ + G + +L G + Sbjct: 54 ASADATRQWVVAKVDLPAGHIIVAGDLATVSARLDERTSGHYYPGSRL---DDLIGATLA 110 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 P+ G+ + + R + + + P DHVDV + +S Sbjct: 111 RPVDTGELVSGPDFAGQNTQP--------TRLVPIIVKA--GRLPTLGPGDHVDVFVFQS 160 Query: 160 LSERKPTVTVVLSNIR--------------VIAIDHNIDSDERVLVGSTATLELTPMQAK 205 + T R V+ + ++ + TL + A Sbjct: 161 GAAAPSTTGGDQQAGRSTPAAPAGAGAEALVLHDVEFVSLEKLTSGDRSLTLRVPVDNAI 220 Query: 206 ALVAAQSVAKLSLV 219 VAA ++ +V Sbjct: 221 QAVAASQSERVDVV 234 >gi|218886984|ref|YP_002436305.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757938|gb|ACL08837.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 354 Score = 45.5 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 10/88 (11%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 +V P + E L++ +A G V+T + L W P V Sbjct: 276 MVGPFTISALESEAPARRNARRSLVAARPIAAGAVITRDDLTWKR-PAHGV--------- 325 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKL 113 P + + G R I + ++ L Sbjct: 326 SPREIDAVLGKRARADIAEDTVLQWSHL 353 >gi|296135677|ref|YP_003642919.1| flagella basal body P-ring formation protein FlgA [Thiomonas intermedia K12] gi|295795799|gb|ADG30589.1| flagella basal body P-ring formation protein FlgA [Thiomonas intermedia K12] Length = 242 Score = 45.5 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 6/70 (8%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V++ L G V+T L V + G + D Q L G ++R + G P Sbjct: 118 VVVVARALQAGHVLTAADLTTVERDAARLPPGAVTD------AQALVGQVLRYSVAAGQP 171 Query: 108 IRLEKLVDRG 117 + L Sbjct: 172 LVQSMLTGPQ 181 >gi|269128340|ref|YP_003301710.1| hypothetical protein Tcur_4144 [Thermomonospora curvata DSM 43183] gi|268313298|gb|ACY99672.1| hypothetical protein Tcur_4144 [Thermomonospora curvata DSM 43183] Length = 297 Score = 45.5 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 52/168 (30%), Gaps = 14/168 (8%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 + ++ + +A G + + L V + + + + ++ VP+ Sbjct: 69 GQRVSAIQIAQPVAAGQQIPMSALREVQIGDTGI------EYISWSERHKVVTGYAAVPL 122 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 + G + + + +G+ + + ++ V V V S Sbjct: 123 VAGALLTDGMVSPVNDA------AQGRVVVGLALKPGQMPAAKLQTGQRVSVYAVGSGQG 176 Query: 163 RKPTVTVVLSNIRVIAIDHNIDSDERVLVGST-ATLELTPMQAKALVA 209 P +LS I + DER+ T + + P A L Sbjct: 177 PGPRPGTLLS-ADAIVVGIEGGDDERLRGDQTMVDVAVPPADAPQLTQ 223 >gi|289178132|gb|ADC85378.1| hypothetical protein BIF_01377 [Bifidobacterium animalis subsp. lactis BB-12] Length = 223 Score = 45.5 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 42/220 (19%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64 R M + +S AL + + L +++ DL G+V+ Sbjct: 37 RHMLLALSVGVALFCTLQCVAL---------------ATATRQAVVAARDLDAGLVIATG 81 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 +E V P+ + + + G++ + I KGD + + G Sbjct: 82 DVEMVEMPDHDALRHAL------GCPDDAVGLVTQTRIEKGDILLTTDV------GELPQ 129 Query: 125 LPKGKRAATMDISISSAVGGMIKP-NDHVDVVMVRSLSERKPTVT---VVLSNIRVIAID 180 +P+ + + +G P V++ ++ ++ VV S+ V+A Sbjct: 130 VPEHHTVIDVRL----GLGQHSFPIGTVVELRSTQACADDARASPEGCVVSSHAVVMA-- 183 Query: 181 HNIDSDERVLVGSTAT-LELTPMQAKALVAAQSVAKLSLV 219 GST T + ++ ++A ++AAQ L Sbjct: 184 ----QPRLDDTGSTVTQMAMSAVEALQVLAAQEHGTLIAA 219 >gi|240169343|ref|ZP_04748002.1| hypothetical protein MkanA1_08521 [Mycobacterium kansasii ATCC 12478] Length = 221 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 65/191 (34%), Gaps = 12/191 (6%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 + + A V+++ DL G +T N + + DG D + Sbjct: 40 AGVAALRSNTDADGSKVVVAARDLRPGSALTYNDIRLETRSAATLPDGSQTD------LG 93 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 + G + P +G+ + +++ ++ G R + ++ S+ + + + Sbjct: 94 AVVGSTLAGPARRGEVLTDVRVLGSRLAESTA--GPGARIVPLHLADSALIDLVRVGDVV 151 Query: 152 VDV--VMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209 V S + P VV ++ V+ + + + + + L A + Sbjct: 152 DVVAAPATDSPAAASPVSKVVATDAVVVLV--SAKPELQSHDDRVVLVVLPARLANTVAG 209 Query: 210 AQSVAKLSLVL 220 A ++L L Sbjct: 210 AVLGQTVTLTL 220 >gi|311899773|dbj|BAJ32181.1| hypothetical protein KSE_64220 [Kitasatospora setae KM-6054] Length = 223 Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 58/215 (26%), Gaps = 27/215 (12%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 ++ + V+ + A G + S I V+ D+ +G V++ + Sbjct: 28 VLAMAVALIAAGGLGGAVLYNSSGQR--------------IAVVALARDVPMGQVISSDD 73 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 L + +Q G+ + +G + L Sbjct: 74 LVVAHIAGDPA-----LRPLDARDLQGTIGLRATTDLKRGALLVKSDLTSDPAT------ 122 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDS 185 G++ + S ++P + +V + T + + Sbjct: 123 QAGQQIVGVYAKRSQLPATKLQPGLQILIVNAPAGDGGSAGATTRSPDTLTAVVAAVGRP 182 Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 D + + + P L + K ++L Sbjct: 183 DTD--GSTVIDVAVGPSDGPKLALWVAGGKFQVIL 215 >gi|319653978|ref|ZP_08008071.1| hypothetical protein HMPREF1013_04690 [Bacillus sp. 2_A_57_CT2] gi|317394300|gb|EFV75045.1| hypothetical protein HMPREF1013_04690 [Bacillus sp. 2_A_57_CT2] Length = 221 Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 44/144 (30%), Gaps = 20/144 (13%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 V+++K + V+T + P E V D +V+ ++ G IL Sbjct: 36 TTQVVMAKDVIEKDTVITNENVWIFQMPNELVTDEMYRNVN------DVVGKTATQVILP 89 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 + + L + + + + G ++ D V++ + + + Sbjct: 90 SQYVSAKALDQSLLRPTA-----EHEFFPIPNAWLVEIQGTLRRYDQVNISAIYAGKQDA 144 Query: 165 PT---------VTVVLSNIRVIAI 179 +L + V + Sbjct: 145 AEVTFNSSLIKSEYILEQVPVAYV 168 >gi|328759525|gb|EGF73133.1| putative membrane protein [Propionibacterium acnes HL099PA1] Length = 195 Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 25/213 (11%), Positives = 61/213 (28%), Gaps = 23/213 (10%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M I +V ++ +L+ + VL D+A G V+ L Sbjct: 1 MLIAAGIAIVIVGALLITQLIRSAQTE------------HRVLEVHADVARGEVIRDTDL 48 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 V + + + + L G + G + + G + Sbjct: 49 VSVTVGQVDNVSTV-----PADQLDSLVGKRATADLRAGSLLPAGAI-----GPADVVPA 98 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186 GK + ++ G + + ++ + ++I+ A Sbjct: 99 PGKSLVGLKLAAGQIPIGDLAAGTKLRLIQTSAGGSSTTGQGATNTDIQSWA-ATMASGT 157 Query: 187 ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + + +E+ A + S ++++V Sbjct: 158 KSTEQVTLINVEVDSRDAARIAQLTSQGRIAVV 190 >gi|156741391|ref|YP_001431520.1| SAF domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156232719|gb|ABU57502.1| SAF domain protein [Roseiflexus castenholzii DSM 13941] Length = 298 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 47/185 (25%), Gaps = 21/185 (11%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 V+I+ D+ G +T + L + P V + G I Sbjct: 47 TERVIIAARDVPYGQQITIDDLAIIELPLHRP-----IQVAGITDPNIVIGQYATRQIGT 101 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 D + L + + + G I D +++ + Sbjct: 102 NDLLNPGMLSPDPPDEPVYPNGRKLERNMVPAPFALTGVGPITDRDRLNIGFIADDPSLC 161 Query: 165 PTVTVVLSNIRVIAIDHNIDSDERVLVGST----------------ATLELTPMQAKALV 208 V+ I + A LE+TP QA AL Sbjct: 162 DRARADAPQGTVLEIPSTALVAPEGMRAYACRWMSGIPVLYIEGEIAYLEMTPAQAHALR 221 Query: 209 AAQSV 213 A Q+ Sbjct: 222 ALQAA 226 >gi|220905152|ref|YP_002480464.1| N-acetylneuraminate synthase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869451|gb|ACL49786.1| N-acetylneuraminate synthase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 356 Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 10/93 (10%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 V ++ L++ + G VT L W P + Sbjct: 274 VGDLSLRALPEEEPARQHARRSLVTARAIPAGTPVTAADLTWKR-PAHGIS--------- 323 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 P E+ G+ R + + + L + G Sbjct: 324 PRNYDEVLGMRARHDLAEDTVLHWSDLENGHKG 356 >gi|302521140|ref|ZP_07273482.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces sp. SPB78] gi|302430035|gb|EFL01851.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces sp. SPB78] Length = 209 Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 15/135 (11%) Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + + KG + E L+ + S++ +GK + + GG +KP D V V V Sbjct: 75 LGSALPKGSLVVGEMLIAKDK----SVVDEGKALVGLALQEGQYPGG-LKPGDTVAVYHV 129 Query: 158 RS--------LSERKPTVTVVLS-NIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKAL 207 S +LS V + E T T+ + +A+AL Sbjct: 130 GKDAGAPASGESGSSAGNRTLLSAQADVKDAGGSSKGGEALSTGDRTLTVSVPESEAQAL 189 Query: 208 VAAQSVAKLSLVLRS 222 A SV ++++VL Sbjct: 190 AQASSVGEVAVVLVP 204 >gi|284029612|ref|YP_003379543.1| SAF domain-containing protein [Kribbella flavida DSM 17836] gi|283808905|gb|ADB30744.1| SAF domain protein [Kribbella flavida DSM 17836] Length = 219 Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 19/187 (10%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + + ++ DL G +T + L V + A +L G+++ Sbjct: 49 ASADDTTTIWAAERDLPAGTKLTSDDLTTVRVRFTSSEAA----GQYVAADADLKGLVMS 104 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 + G+ + S + + I+ I D VD+ +V Sbjct: 105 RAVKAGEFV--------PRRAAVSQAENNRTELPLSIATGRLPAD-ITAGDQVDIWVVPK 155 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL---VAAQSVAKL 216 + + +RV +D + + L P+ L +AA S + Sbjct: 156 --DATQPARKLWDAVRVSQVDASKGVAGGSAR-RQVLVGLEPLDLPKLPGALAAMSSGEP 212 Query: 217 SLVLRSI 223 LV R Sbjct: 213 VLVRRGR 219 >gi|317125617|ref|YP_004099729.1| SAF domain protein [Intrasporangium calvum DSM 43043] gi|315589705|gb|ADU49002.1| SAF domain protein [Intrasporangium calvum DSM 43043] Length = 238 Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 58/195 (29%), Gaps = 21/195 (10%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++ ++ + + + ++ DL G VT V + G+ Sbjct: 36 LMVGIILVLVSATLGARLVASADERTPYFVAVDDLVAGDRVTGATFRRVDVALSDGMGGY 95 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 + G + + G+ + L D G + T+ ++ Sbjct: 96 LRADFPVP-----VGKALTRDLRAGELVPSSALSDPGEVDVQR--------VTVRTDATA 142 Query: 141 AVGGMIKPNDHVDVVMVRS-----LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTA 195 VG + VDV + + ++L V+ I + ++ Sbjct: 143 TVG--LDRGQRVDVYVTPDAHGAGAEDEDSGTELLLEAAAVVEI-VASEGGFGAAARTSV 199 Query: 196 TLELTPMQAKALVAA 210 L + Q KA+V A Sbjct: 200 QLYVPTGQVKAVVEA 214 >gi|163750576|ref|ZP_02157814.1| flagellar basal body P-ring biosynthesis protein [Shewanella benthica KT99] gi|161329731|gb|EDQ00720.1| flagellar basal body P-ring biosynthesis protein [Shewanella benthica KT99] Length = 234 Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 18/137 (13%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V++++ L G ++T + + + Q + + E+ G + I Sbjct: 113 PVVVARATLGPGDLITKGDIVIKYV------EQTLLRGRQFSNLDEVVGTRAKRRIAPNQ 166 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 PI L G S++ + + + + G + D + + S Sbjct: 167 PIFSNNLCFVCKGDSVSIIARTE-NFQIKTVGEALQDGNL--GDRIRIKNTYSNKR---- 219 Query: 167 VTVVLSNIRVIAIDHNI 183 N RVI + Sbjct: 220 -----VNARVIDVGKVE 231 >gi|152990360|ref|YP_001356082.1| flagellar protein FlgA [Nitratiruptor sp. SB155-2] gi|151422221|dbj|BAF69725.1| flagellar protein FlgA [Nitratiruptor sp. SB155-2] Length = 238 Score = 44.0 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 12/130 (9%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 NV+++ D+ G ++ L + +QE+ G + RV I K Sbjct: 117 NVVVAVHDIPRGSLIQKKDLAVQKM---------VTHGKNYPDLQEIIGSVARVNIYKNR 167 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 I + + + I +G ++ D++ V+++S K Sbjct: 168 KITRYMIEPNYAVKKRQNVRIIYAKGPIRIE---LLGLALQNGKRGDIIKVKNISTNKVL 224 Query: 167 VTVVLSNIRV 176 VLS+ V Sbjct: 225 ECKVLSDGVV 234 >gi|7662346|ref|NP_055728.1| ADNP homeobox protein 2 [Homo sapiens] gi|74757998|sp|Q6IQ32|ADNP2_HUMAN RecName: Full=ADNP homeobox protein 2; AltName: Full=Zinc finger protein 508 gi|47938799|gb|AAH71589.1| ADNP homeobox 2 [Homo sapiens] gi|119587050|gb|EAW66646.1| KIAA0863 protein, isoform CRA_a [Homo sapiens] gi|119587051|gb|EAW66647.1| KIAA0863 protein, isoform CRA_a [Homo sapiens] gi|158258569|dbj|BAF85255.1| unnamed protein product [Homo sapiens] gi|167773575|gb|ABZ92222.1| ADNP homeobox 2 [synthetic construct] gi|168269504|dbj|BAG09879.1| zinc finger protein 508 [synthetic construct] Length = 1131 Score = 44.0 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 13/163 (7%) Query: 34 TEEVITENPAKFINVLISKGDLAVG--MVVTPNILEW-VAFPEENVFDGFIDDVHQPNAM 90 T+ V N VL + G V+P +L A P + G + Q Sbjct: 404 TQPVGPINRPVGPGVLPVSPSVTPGVLQAVSPGVLSVSRAVPSGVLPAGQMTPAGQMTPA 463 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI--SISSAVGGMIKP 148 + G +L + ++ G S +LP G+ A + + + G++ P Sbjct: 464 GVIPGQTATSGVLPTGQMVQSGVLPVGQTAPSRVLPPGQTA-PLRVISAGQVVPSGLLSP 522 Query: 149 NDHVDVVMVRSLSERK-----PTVTVVLSNIRVIAIDHNIDSD 186 N V V +++ V+S V+ + + Sbjct: 523 NQTVSSSAVVPVNQGVNSGVLQLSQPVVSG--VLPVGQPVRPG 563 >gi|40788964|dbj|BAA74886.2| KIAA0863 protein [Homo sapiens] Length = 1181 Score = 44.0 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 13/163 (7%) Query: 34 TEEVITENPAKFINVLISKGDLAVG--MVVTPNILEW-VAFPEENVFDGFIDDVHQPNAM 90 T+ V N VL + G V+P +L A P + G + Q Sbjct: 454 TQPVGPINRPVGPGVLPVSPSVTPGVLQAVSPGVLSVSRAVPSGVLPAGQMTPAGQMTPA 513 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI--SISSAVGGMIKP 148 + G +L + ++ G S +LP G+ A + + + G++ P Sbjct: 514 GVIPGQTATSGVLPTGQMVQSGVLPVGQTAPSRVLPPGQTA-PLRVISAGQVVPSGLLSP 572 Query: 149 NDHVDVVMVRSLSERK-----PTVTVVLSNIRVIAIDHNIDSD 186 N V V +++ V+S V+ + + Sbjct: 573 NQTVSSSAVVPVNQGVNSGVLQLSQPVVSG--VLPVGQPVRPG 613 >gi|227487790|ref|ZP_03918106.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227542431|ref|ZP_03972480.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227092292|gb|EEI27604.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227181629|gb|EEI62601.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 192 Score = 44.0 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 52/171 (30%), Gaps = 32/171 (18%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+ ++ G + P+ + P+ + D + D G + + +G Sbjct: 38 TVVTLSRTVSAGETLAPSDFSRTSVPQSLIPDNAVTDD------TAAHGNVAVTTLSRGQ 91 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + G + P G + + ++ A ++K D V +V S Sbjct: 92 ILTSTSYTGEG------ITPAGLTSVPLRLADP-ATSELLKHGDSVTIVA-GDGSIVCEK 143 Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 TV+L T + + A A+ +A ++ Sbjct: 144 ATVILPR------------------KDTVLVAMDSDLAPAVASATLNGPVT 176 >gi|309811232|ref|ZP_07705024.1| SAF domain protein [Dermacoccus sp. Ellin185] gi|308434844|gb|EFP58684.1| SAF domain protein [Dermacoccus sp. Ellin185] Length = 760 Score = 43.6 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 13/88 (14%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ D+A G +T + + G QPN ++ L G +R PI GD Sbjct: 408 LVATRDIAAGEKLTRADVTIKS-------PG---RGLQPNRLEALVGRTMRRPIESGDFF 457 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDI 136 L D G + KR + + Sbjct: 458 YATDLTDAVAHGRAYEF---KRPWGLPV 482 >gi|294786498|ref|ZP_06751752.1| LPXTG-motif cell wall anchor domain protein [Parascardovia denticolens F0305] gi|315226071|ref|ZP_07867859.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] gi|294485331|gb|EFG32965.1| LPXTG-motif cell wall anchor domain protein [Parascardovia denticolens F0305] gi|315120203|gb|EFT83335.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] Length = 274 Score = 43.6 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 64/222 (28%), Gaps = 46/222 (20%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64 RL I + + +L+A + ++ Q+ ++ D++ G + P Sbjct: 66 RLKKIATAFLISLMAFCLIQIGLTVSSNQSA-------------FVAARDISQGQEIHPG 112 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 + V + + + G +P+ KGDP+ + + Sbjct: 113 DIAQVRMRTNPLA------TRTVKSASAVLGRRAAIPLRKGDPLVPTAVKAAEDYPADYT 166 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-----VLSNIRVIAI 179 T+ ++ +S + + P VD+V ++ S V + + + Sbjct: 167 --------TIALTPASQIS-SLSPGQKVDLVTEKTESCHASPVETGKPGMGTQGVEICYV 217 Query: 180 DHNIDSDERVLVGST-------------ATLELTPMQAKALV 208 R T L A AL Sbjct: 218 AKGAIVLGRPGEKRTAFSLTDSDQSRKEIVFALPVESALALT 259 >gi|294339847|emb|CAZ88210.1| putative Flagella basal body P-ring formation protein flgA [Thiomonas sp. 3As] Length = 244 Score = 43.6 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 6/70 (8%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V++ L G V+T L V + G + D Q L G ++R + G P Sbjct: 120 VVVVARALQAGHVLTAADLTMVERDATRLPPGAVTD------AQALVGQVLRYSVAAGQP 173 Query: 108 IRLEKLVDRG 117 + L Sbjct: 174 LAQSMLTGPQ 183 >gi|225023053|ref|ZP_03712245.1| hypothetical protein CORMATOL_03101 [Corynebacterium matruchotii ATCC 33806] gi|224944276|gb|EEG25485.1| hypothetical protein CORMATOL_03101 [Corynebacterium matruchotii ATCC 33806] Length = 216 Score = 43.6 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 16/153 (10%), Positives = 48/153 (31%), Gaps = 4/153 (2%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + I+V++ D+A G +T + V E + + + + Sbjct: 39 QHISVVVYSRDVAAGSRITAADVTVVHVSESVLPQDRLATTDAAVGNIVVASRSRGAMVS 98 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 D + + S+ + ++ + + +++P D + ++ + ++ Sbjct: 99 AADFVDSALVSQTMTNTTSNDAGVKTHMVPITLADPT-LASLLRPGDTITII---TAADD 154 Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT 196 V+ + +VI G+ Sbjct: 155 NSAPRVIAAGGKVIFATTKATDFPGATPGTVLV 187 >gi|293604999|ref|ZP_06687395.1| flagella basal body P-ring formation protein FlgA [Achromobacter piechaudii ATCC 43553] gi|292816604|gb|EFF75689.1| flagella basal body P-ring formation protein FlgA [Achromobacter piechaudii ATCC 43553] Length = 238 Score = 43.6 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 6/106 (5%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ ++ G +TP+ L ++ G I D Q + G+ I G P+ Sbjct: 117 YVASRMISAGQALTPDDLAPRDGDLVSLPPGAITDP------QAVVGMSAAFRINAGQPV 170 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 R L + + + + R +S P V V Sbjct: 171 RSSSLRNAQSVMRGANVRINARGNGFVVSSEGQALDNAAPGAVVQV 216 >gi|170742324|ref|YP_001770979.1| flagella basal body P-ring formation protein FlgA [Methylobacterium sp. 4-46] gi|168196598|gb|ACA18545.1| flagella basal body P-ring formation protein FlgA [Methylobacterium sp. 4-46] Length = 347 Score = 43.6 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 6/95 (6%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 LV+ Q ++ + + V + LA G V P + P + + Sbjct: 184 VSGLVTVGERQASLRVSGQVIEMVEVAVLARPLARGETVGPQDVTLERRPRDAAPPDGVA 243 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 D L G + + + G P+R L Sbjct: 244 DAAS------LVGQVAQRALAPGQPLRSADLARPD 272 >gi|149191168|ref|ZP_01869426.1| flagellar basal body P-ring biosynthesis protein [Vibrio shilonii AK1] gi|148835006|gb|EDL51985.1| flagellar basal body P-ring biosynthesis protein [Vibrio shilonii AK1] Length = 235 Score = 43.6 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 7/106 (6%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 + + L G ++P+ + D E+ G ++ + KG+ + Sbjct: 115 VTADKALRKGQRLSPSDIAIK-------PIKLYTDKKVFFKPSEVVGSKLKRSVKKGELL 167 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 +L + + ++ T+ + D V V Sbjct: 168 TTSRLYLDYDVEKGQAVDVVYQSETIRLETLGTALESGLVGDTVSV 213 >gi|326792825|ref|YP_004310646.1| hypothetical protein Clole_3768 [Clostridium lentocellum DSM 5427] gi|326543589|gb|ADZ85448.1| hypothetical protein Clole_3768 [Clostridium lentocellum DSM 5427] Length = 304 Score = 43.2 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 8/134 (5%) Query: 38 ITENPAKFINVLISKGD--LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 E+ + V+ K L + +VT +E + + + G Sbjct: 41 AAEDTRNTVAVVRIKNPEGLQMDALVTEEDVEKYNVIRTEYNPDMVLAED----IDNVIG 96 Query: 96 VLVRVPILKGDPIRLEKLV--DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 + + K + ++L L + T+ + G ++ P D V Sbjct: 97 MYTLYYLRKDSIVYKDQLGGERPITNEWLYQLGEDDEVITLQYNYLKCGGDILMPGDRVR 156 Query: 154 VVMVRSLSERKPTV 167 + LSE+ Sbjct: 157 IRATYELSEQDSGT 170 >gi|304315163|ref|YP_003850310.1| hypothetical protein MTBMA_c14100 [Methanothermobacter marburgensis str. Marburg] gi|302588622|gb|ADL58997.1| conserved hypothetical protein [Methanothermobacter marburgensis str. Marburg] Length = 436 Score = 43.2 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 80/247 (32%), Gaps = 40/247 (16%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLI---SKGDLAVGMVVTPN 64 +V + ++AG LV + + + ++ L D ++ Sbjct: 117 ALVFGVILMVLAGAGYYFLVYQPYQEVLQNAKATKIAEVDALFKGPLATDPQKQAILAQI 176 Query: 65 ILEWVAFPEENVFDGFI---------DDVHQPNAMQELDGVLVRVPILKGD-------PI 108 PEE + + Q N ++ G ++ Sbjct: 177 DAAVT--PEEALAVDVVGPATQSWRTYQNQQINIKKDRVGRVMVNYTDNDQQKRVIMKVA 234 Query: 109 RLEKLVDRGNGGLSS---LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 +K V + + + + + A + I+ A GG+I + VDV + ++ +E Sbjct: 235 DAKKFVSQADATVLANTQIQTPDTVAVPIMITRLQAAGGLISVGNMVDVYLNQNATENNT 294 Query: 166 T---VTVVLSNIRVIAIDHNIDSD--------ERVLVGSTATLE-----LTPMQAKALVA 209 + T +S V+AI + DS + L +T T + + + L+ Sbjct: 295 SAAASTPRISGATVLAILRSKDSGTVDARILNTQRLTLNTITSQSENERTSSTDVEQLLR 354 Query: 210 AQSVAKL 216 A + L Sbjct: 355 AAASGGL 361 >gi|255609741|ref|XP_002539089.1| Flagella basal body P-ring formation protein flgA precursor, putative [Ricinus communis] gi|223508772|gb|EEF23295.1| Flagella basal body P-ring formation protein flgA precursor, putative [Ricinus communis] Length = 163 Score = 43.2 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 6/106 (5%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++ +A G +T + LE +G + +++ G + I G+ + Sbjct: 42 VVATHPIARGQAITQDDLELQTRDLTQYPNGTFSNP------EQIIGRTATLNIPAGEVL 95 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 R E+L + + A +S G V V Sbjct: 96 RPEQLKAALVIRQGQQVTLVAQGAGFKVSSEGTAMGNAATGQVVAV 141 >gi|212709488|ref|ZP_03317616.1| hypothetical protein PROVALCAL_00530 [Providencia alcalifaciens DSM 30120] gi|212687826|gb|EEB47354.1| hypothetical protein PROVALCAL_00530 [Providencia alcalifaciens DSM 30120] Length = 223 Score = 43.2 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 37/181 (20%), Gaps = 60/181 (33%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 ++ ++ G + + + G D L G L I Sbjct: 97 TGQYYVATRNIQRGETIEFVDIGTKKGLIHQLPSGASTDKM------ALRGTLALRNITA 150 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---- 160 G + IK V V Sbjct: 151 GQTFTNSMVRRPWA---------------------------IKAGQTVYVFATGDNFSVK 183 Query: 161 -SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 R V+ NIRV I+ + + E AQ + + Sbjct: 184 YEGRAINNAVIGENIRVRLINGQVVNGE----------------------AQENGSVHVA 221 Query: 220 L 220 L Sbjct: 222 L 222 >gi|313837841|gb|EFS75555.1| SAF domain protein [Propionibacterium acnes HL037PA2] gi|314929719|gb|EFS93550.1| SAF domain protein [Propionibacterium acnes HL044PA1] gi|314972768|gb|EFT16865.1| SAF domain protein [Propionibacterium acnes HL037PA3] Length = 217 Score = 43.2 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 65/217 (29%), Gaps = 23/217 (10%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + +V ++ +L+ + VL + D+ G V+ Sbjct: 19 RRRPVFVAAGIAIVVVGALLIAQLIHAGQTEN------------RVLEVRSDVGRGEVIR 66 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L V + + + L G V + G + + G Sbjct: 67 DTDLVAVTVGQVGNVSTV-----PADQLDALVGKRAAVDLRSGSLLSAGAI-----GAAD 116 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 ++ GK + ++ G + + ++ +L+ +N + Sbjct: 117 TVPAPGKSLVGLKLAPGQVPIGDLTAGAKLRLIQTSALNGSATATDAANTNGQSWD-ATM 175 Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 S + + +E+ +A + S ++++V Sbjct: 176 AASTKGTDQVTLVNVEVKSGEAARIAQLTSQGRIAVV 212 >gi|261856134|ref|YP_003263417.1| flagella basal body P-ring formation protein FlgA [Halothiobacillus neapolitanus c2] gi|261836603|gb|ACX96370.1| flagella basal body P-ring formation protein FlgA [Halothiobacillus neapolitanus c2] Length = 255 Score = 43.2 bits (100), Expect = 0.041, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 33/119 (27%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + +N + LA G ++ L + ++ E G + Sbjct: 123 VPARIQTMVNAISLARPLAPGTRISAEDLTTTPVNANQQVNAYLTSPD------EAIGQI 176 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 V P+ G + + L + +I DHV V+ Sbjct: 177 VTRPMQAGQILTQQDL---------------------------GIAKVIHRGDHVTVIA 208 >gi|158317577|ref|YP_001510085.1| SAF domain-containing protein [Frankia sp. EAN1pec] gi|158112982|gb|ABW15179.1| SAF domain protein [Frankia sp. EAN1pec] Length = 258 Score = 42.8 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 29/195 (14%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP-NAMQELDGVLV 98 + +++ DL G +V + L DG + D + P + EL G + Sbjct: 55 ATADRTRQWVVAAADLPAGHIVVDSDLTT----ATAHLDGAMSDRYYPGDRRSELLGATL 110 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 P+ G+ + G R + + + P DHVDV + + Sbjct: 111 ARPVSSGELLSGADFAGEGAAA--------TRLVPVIVKA--GRVPDLSPGDHVDVFVYQ 160 Query: 159 SL-----SERKPTVTVVLSN---------IRVIAIDHNIDSDERVLVGSTATLELTPMQA 204 I+V+ + D + +L + A Sbjct: 161 PGAAAPPETGGDPAQPAQEGQAVAGAGVEIQVLHDVEFVAQDRLNSGDRSLSLRVPVDDA 220 Query: 205 KALVAAQSVAKLSLV 219 VAA ++ +V Sbjct: 221 IRAVAASQSERVDVV 235 >gi|295129568|ref|YP_003580231.1| SAF domain protein [Propionibacterium acnes SK137] gi|291376368|gb|ADE00223.1| SAF domain protein [Propionibacterium acnes SK137] Length = 212 Score = 42.8 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 30/222 (13%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + RL+ I V G + H Q VL+ + G +V Sbjct: 21 RSPRLIVIGVLCACLGGLGGAVAWHRASHADQ--------------VLVMTRAVGQGDIV 66 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + + + + ++ G V + G + + + Sbjct: 67 RNADIGLTSVAVDRAVATI-----PASQLDKIVGRHALVDLSPGQLLGSHSVGE------ 115 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 + G+ + ++ + V V+ + + ++ V+A Sbjct: 116 -LRVAPGRARIGLKLAAGRLPTVSLPAGARVTVIETSPDKDTGTVSNLSTADAVVVAAPK 174 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 + +E+ A L S+ +++LV R Sbjct: 175 ATNDHGNW----LVDVEVDSGNAARLADLASLDRIALVERGQ 212 >gi|328908302|gb|EGG28061.1| SAF domain protein [Propionibacterium sp. P08] Length = 219 Score = 42.8 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 14/122 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ + G V+ + L + + A+ +++G V I +G Sbjct: 62 EVVVAARAIEGGRVIQRSDLRTIRIDPGILPHEA-------AALAQVEGRQASVRITEGT 114 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + ++ G GK + ++ SS V GM++ V VV Sbjct: 115 ILTTSAVLSGSATG------SGKALVGIHLADSSMV-GMLQVGQQVSVVSPSEDGTPHVL 167 Query: 167 VT 168 Sbjct: 168 TR 169 >gi|257791659|ref|YP_003182265.1| N-acylneuraminate-9-phosphate synthase [Eggerthella lenta DSM 2243] gi|317487875|ref|ZP_07946467.1| NeuB family protein [Eggerthella sp. 1_3_56FAA] gi|325830571|ref|ZP_08163992.1| SAF domain protein [Eggerthella sp. HGA1] gi|257475556|gb|ACV55876.1| N-acylneuraminate-9-phosphate synthase [Eggerthella lenta DSM 2243] gi|316913001|gb|EFV34518.1| NeuB family protein [Eggerthella sp. 1_3_56FAA] gi|325487317|gb|EGC89759.1| SAF domain protein [Eggerthella sp. HGA1] Length = 365 Score = 42.8 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 10/99 (10%) Query: 19 AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 L+ ++ E T A L++ D+ G V+ +L + P + Sbjct: 269 GVCFVETLLGDSSLRHSESETAARANARRSLVAAADIPAGSVIDKGMLTFKR-PGTGISP 327 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 + E+ G + RV I I + L D Sbjct: 328 SLV---------GEVVGRVARVDIPADVLIDMTMLSDSR 357 >gi|229819753|ref|YP_002881279.1| SAF domain protein [Beutenbergia cavernae DSM 12333] gi|229565666|gb|ACQ79517.1| SAF domain protein [Beutenbergia cavernae DSM 12333] Length = 219 Score = 42.8 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 63/209 (30%), Gaps = 23/209 (11%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 + L+ V + + + V + DLA G + + L + + Sbjct: 28 LGVGLLLVAASVALGTWAVQAADESVAVYAATDDLAPGDRLDADDLTVRQIRWDGEGGTY 87 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 + V+V P+ G+ LV G + + A + Sbjct: 88 LLAEDGVPDD-----VVVTRPVGAGE------LVPSSATGPADAVDTRPVAMPVP----- 131 Query: 141 AVGGMIKPNDHVDVVM-----VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTA 195 G I HVDV + +V+ N+ V ++ D+ G A Sbjct: 132 -AGSGIGAGVHVDVWAVPPSSTGDDGDEAAVPELVVENVLVASV-TEDDTLFASSSGQVA 189 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIA 224 + + Q ++A + +L++ Sbjct: 190 RVLVPADQVGDVLAVTAAGGSTLIVERPG 218 >gi|206889894|ref|YP_002249847.1| flagella basal body P-ring formation protein FlgA [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741832|gb|ACI20889.1| flagella basal body P-ring formation protein FlgA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 231 Score = 42.8 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 15/135 (11%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 V I++ L G V+T + + P + G I D + L G +V+ + +G Sbjct: 106 TRVYITQIPLKRGEVITEEKIMEIKQPLSRLPVGAITDKNL------LIGKVVKRSLTRG 159 Query: 106 DPIRLEKLVD----RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 I+ + L + + ++ G+ + ++ N V Sbjct: 160 LIIKEDYLYSGMPVKKGSKVDVIINTGQ--VMIMTEGVLKSDAVVGGNARVQCFQTGKEI 217 Query: 162 ERKPTVTVVLSNIRV 176 K +RV Sbjct: 218 VGKLVGK---DKVRV 229 >gi|307945667|ref|ZP_07661003.1| flagella basal body P-ring formation protein FlgA [Roseibium sp. TrichSKD4] gi|307771540|gb|EFO30765.1| flagella basal body P-ring formation protein FlgA [Roseibium sp. TrichSKD4] Length = 326 Score = 42.8 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 48/143 (33%), Gaps = 9/143 (6%) Query: 42 PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101 + + V L G V+ + P V + D Q + G+ +P Sbjct: 184 AQEMLEVTTLLQPLRSGQVLRLEDMTTTRLPRTKVPANAVTDPKQIAGLAARTGLRANMP 243 Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 +++ D + + ++ ++ + + G + D +D+ ++L Sbjct: 244 LVRNDFAKPVLISRGEKVSITYMVGG----MKLTTRGRAMDDGAL--GDPIDI---KNLD 294 Query: 162 ERKPTVTVVLSNIRVIAIDHNID 184 + +V S +V+A + Sbjct: 295 SGRIVPAMVRSRGQVLAQPASAQ 317 >gi|50841530|ref|YP_054757.1| hypothetical protein PPA0039 [Propionibacterium acnes KPA171202] gi|289424493|ref|ZP_06426276.1| SAF domain protein [Propionibacterium acnes SK187] gi|289427324|ref|ZP_06429037.1| SAF domain protein [Propionibacterium acnes J165] gi|50839132|gb|AAT81799.1| putative membrane protein [Propionibacterium acnes KPA171202] gi|289155190|gb|EFD03872.1| SAF domain protein [Propionibacterium acnes SK187] gi|289159254|gb|EFD07445.1| SAF domain protein [Propionibacterium acnes J165] gi|332674438|gb|AEE71254.1| hypothetical protein PAZ_c00410 [Propionibacterium acnes 266] Length = 212 Score = 42.8 bits (99), Expect = 0.049, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 30/222 (13%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + RL+ I V G + H Q VL+ + G +V Sbjct: 21 RSPRLIVIGVLCACLGGLGGAVAWHRASHADQ--------------VLVMTRAVGQGDIV 66 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + + + + ++ G V + G + + + Sbjct: 67 RNADIGLTSVAVDRAVATI-----PASQLDKIVGRHALVDLSPGQLLGSHSVGE------ 115 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 + G+ + ++ + V V+ + + ++ V+A Sbjct: 116 -LRVAPGRARIGLKLAAGRLPTVSLPAGARVTVIETSPDKDTGTVSNLSTADAVVVAAPK 174 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 + +E+ A L S+ +++LV R Sbjct: 175 ATNDHGSW----LVDVEVDSGNAARLADLASLDRIALVERGQ 212 >gi|50841975|ref|YP_055202.1| hypothetical protein PPA0492 [Propionibacterium acnes KPA171202] gi|50839577|gb|AAT82244.1| hypothetical protein PPA0492 [Propionibacterium acnes KPA171202] Length = 219 Score = 42.8 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 56/175 (32%), Gaps = 21/175 (12%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ + G V+ + L V + + +++G + I +G Sbjct: 62 EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 114 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + ++ S + GK + ++ SS V GM++ V VV Sbjct: 115 ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDG----- 162 Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLV 219 VL+ +I ST + A A+ A L LV Sbjct: 163 TPHVLTRGAIIRSLPTSGGGLIQGSPSTELVVVSTGSTDAAAIAVAGQGQPLGLV 217 >gi|256833036|ref|YP_003161763.1| SAF domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686567|gb|ACV09460.1| SAF domain protein [Jonesia denitrificans DSM 20603] Length = 241 Score = 42.8 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 64/197 (32%), Gaps = 20/197 (10%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ L G +T L+ V + ++ +G++ VP+ +G Sbjct: 58 FVAARTLQPGDAITEADLQAVDVELGQHLNNYLT------PETMGEGLVAVVPVHQGQ-- 109 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168 LV + G ++ + A + + + P +D+ + Sbjct: 110 ----LVAVTSTGSAADVDSRIMAVPIT----GQLPAQVVPGSTIDLWYAPEATPTGEVGD 161 Query: 169 VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQA---KALVAAQSVAKLSLVLRSIAD 225 + + D+D V T+ L + Q+ L A Q+ L+ + D Sbjct: 162 P-DQVASGLTVSQIPDTDSVFGVSGTSYLHVVVPQSDIPAVLAATQAKGALTALPVPHGD 220 Query: 226 LNPSSSEDSDVWDVQEE 242 +P+ + D + E Sbjct: 221 GSPAPASDGSPSNNTAE 237 >gi|282853081|ref|ZP_06262418.1| SAF domain protein [Propionibacterium acnes J139] gi|282582534|gb|EFB87914.1| SAF domain protein [Propionibacterium acnes J139] Length = 212 Score = 42.8 bits (99), Expect = 0.052, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 63/222 (28%), Gaps = 30/222 (13%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + RL+ I V G + H Q VL+ + G +V Sbjct: 21 RSPRLIVIGVLCACLGGLGGAVAWHRASHADQ--------------VLVMTRAVGQGDIV 66 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + + + + ++ G V + G + + + Sbjct: 67 RNADIGLTSVAVDRAVATI-----PASQLDKIVGRHALVDLSPGQLLGSHSVGE------ 115 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 + G+ + ++ + HV V+ + + ++ V+A Sbjct: 116 -LRVAPGRARIGLKLAAGRLPTVSLPAGAHVTVIETSPDKDTGTVSNLSTADAVVVAAPK 174 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 + +E+ A L S+ +++LV R Sbjct: 175 ATNDHGSW----LVDVEVDSGNAARLADLASLDRIALVERGQ 212 >gi|284031219|ref|YP_003381150.1| hypothetical protein Kfla_3290 [Kribbella flavida DSM 17836] gi|283810512|gb|ADB32351.1| hypothetical protein Kfla_3290 [Kribbella flavida DSM 17836] Length = 241 Score = 42.8 bits (99), Expect = 0.055, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 56/202 (27%), Gaps = 27/202 (13%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + L + V + AG +I N + + +K L G ++ Sbjct: 32 RRPALAALAVILILLGAAG--------------SALIAINNGERQYYVAAKVPLPPGHLI 77 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + G + + ++ LDG I G + Sbjct: 78 DKDNDLTR-----GDLAGATGRLVPWSELERLDGQYTTSWIYPGQFLAEGSTTRDP---- 128 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA-ID 180 +P+G + + A ++ D V ++ V + ++ ++ + + Sbjct: 129 ---VPEGGALVGISLEGGRAPSEELQQGDIVRLIRVPAANQDGGVPQIIAPAASIKSKSG 185 Query: 181 HNIDSDERVLVGSTATLELTPM 202 D+ T+ + Sbjct: 186 ALTDAKTNAGTTLNVTVLVPDE 207 >gi|297200321|ref|ZP_06917718.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|197709437|gb|EDY53471.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 177 Score = 42.4 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 4/88 (4%) Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVG 192 + I+ ++ V +++P D VDV+ + VV RV + + D G Sbjct: 93 PVRIADAATV-RLLRPGDRVDVIAAEESALGGD-ARVVARGARVTKVPEPV--DGATEGG 148 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVL 220 + L + A L A + A+L++ L Sbjct: 149 ALVVLSVPRSTAARLAGASATARLAVTL 176 >gi|289641009|ref|ZP_06473178.1| SAF domain protein [Frankia symbiont of Datisca glomerata] gi|289509129|gb|EFD30059.1| SAF domain protein [Frankia symbiont of Datisca glomerata] Length = 271 Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 48/181 (26%), Gaps = 16/181 (8%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++ DL G VV L + ++ EL G + P+ G+ Sbjct: 69 VVAAADLPAGHVVVAADLTTAS---AHLRSTTAARYFPGERRSELVGATLARPVSAGELF 125 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168 V R ++ + + P DHVD+ +++ T Sbjct: 126 SGADFVLDDVRP--------TRLVSIVVKD--GRAPALTPGDHVDIFVLQRSGPAGVGAT 175 Query: 169 VVLSNIRVIAIDHNIDSDERVLVGSTATLEL-TPMQAKALVAAQSVAKLSLVLRSIADLN 227 A + T L L A +L LR +L Sbjct: 176 GTGVGAPGAAQATGQVPVAQSGSAGTEVLVLHDVEFIARTTLAA--GSYALTLRVPVELA 233 Query: 228 P 228 Sbjct: 234 I 234 >gi|313497782|gb|ADR59148.1| N-acetyl neuramic acid synthetase NeuB [Pseudomonas putida BIRD-1] Length = 632 Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 10/100 (10%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +I+ D+ G ++ +L + P + + + EL G VR I++GD + Sbjct: 290 VIAARDIPCGALLEQGMLRIAS-PGQGLPPY---------RLPELLGKPVRRDIVQGDFL 339 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148 L ++ + + + I+P Sbjct: 340 FESDLQEQQPEQKLAFDMPVRWGVPVRYHDFRDYRRRIEP 379 >gi|297161942|gb|ADI11654.1| SAF domain protein [Streptomyces bingchenggensis BCW-1] Length = 203 Score = 42.4 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 14/171 (8%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 ++ + VL+ D+ G V+T L V E V + G Sbjct: 27 ALVASAVGERGQVLVLARDVPAGHVLTAGDLRQVEVASE-------TGVVAAAGRSGVLG 79 Query: 96 VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 RVP++ G + + GG + PKG+ + SA G+++ D V V+ Sbjct: 80 RRARVPLVAGSLLAPGQF-----GGRRAFPPKGQSEVAFAVEAGSASPGVVR-GDRVAVL 133 Query: 156 MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKA 206 T ++ V+ + + E T+ + + Sbjct: 134 E-GPGGTDGGTGDGAAASAPVVGTVTGMKAPESPGGVRVVTVLVETGAVRR 183 >gi|219682833|ref|YP_002469216.1| cation transport ATPase [Bifidobacterium animalis subsp. lactis AD011] gi|219620483|gb|ACL28640.1| cation transport ATPase [Bifidobacterium animalis subsp. lactis AD011] Length = 192 Score = 42.4 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 42/220 (19%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64 R M + +S AL + + L +++ DL G+V+ Sbjct: 6 RHMLLALSVGVALFCTLQCVAL---------------ATATRQAVVAARDLDAGLVIATG 50 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 +E V P+ + + + G++ + I KGD + + G Sbjct: 51 DVEMVEMPDHDALRHAL------GCPDDAVGLVTQTRIEKGDILLTTDV------GELPQ 98 Query: 125 LPKGKRAATMDISISSAVGGMIKP-NDHVDVVMVRSLSERKPTVT---VVLSNIRVIAID 180 +P+ + + +G P V++ ++ ++ VV S+ V+A Sbjct: 99 VPEHHTVIDVRL----GLGQHSFPIGTVVELRSTQACADDARASPEGCVVSSHAVVMA-- 152 Query: 181 HNIDSDERVLVGSTAT-LELTPMQAKALVAAQSVAKLSLV 219 GST T + ++ ++A ++AAQ L Sbjct: 153 ----QPRLDDTGSTVTQMAMSAVEALQVLAAQEHGTLIAA 188 >gi|218778845|ref|YP_002430163.1| flagella basal body P-ring formation protein FlgA [Desulfatibacillum alkenivorans AK-01] gi|218760229|gb|ACL02695.1| Flagella basal body P-ring formation protein FlgA [Desulfatibacillum alkenivorans AK-01] Length = 324 Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ L V+T + + DG + D +E+ G+ +R + G+ Sbjct: 200 PVVVATRKLDRMDVLTAGDVTVEMRNLSRLPDGVVTDP------KEVRGMRLRQDMDAGE 253 Query: 107 PIRLEKLVDRG 117 + L Sbjct: 254 HMLSRMLEKPP 264 >gi|331006029|ref|ZP_08329371.1| Flagellar basal-body P-ring formation protein flgA [gamma proteobacterium IMCC1989] gi|330420158|gb|EGG94482.1| Flagellar basal-body P-ring formation protein flgA [gamma proteobacterium IMCC1989] Length = 241 Score = 42.4 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 +VL+ +L G +VT + + + +G+I D + G ++ P+ + Sbjct: 115 KKSVLVINKNLPKGHIVTDTDINYSTKNIRTLRNGYISDKSF------VLGSQLKRPVRE 168 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 G PI +L + + ++ + S + + +DV +RS R Sbjct: 169 GQPIYSHQLEPIELIKKGDKVNISAKVGSLTVVTSGTALDNGRKGEQIDVKNLRSS--RI 226 Query: 165 PTVTVV-LSNIRVI 177 ++ S++ VI Sbjct: 227 IRTKIIGASSVEVI 240 >gi|103487065|ref|YP_616626.1| N-acylneuraminate-9-phosphate synthase [Sphingopyxis alaskensis RB2256] gi|98977142|gb|ABF53293.1| N-acetylneuraminate synthase [Sphingopyxis alaskensis RB2256] Length = 749 Score = 42.4 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 13/88 (14%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ + G + ++ + P + + F EL G + + +++GD Sbjct: 406 LVAARPIRAGQQIADEDIQIRS-PGQGLQPYF---------RAELVGRIAKRDMIEGDFF 455 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDI 136 L D R + + Sbjct: 456 FQSDLADAVASARDYRFD---RPFGVPV 480 >gi|289675699|ref|ZP_06496589.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. syringae FF5] Length = 112 Score = 42.4 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 24/65 (36%) Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 D + +++ + T T+ + L+ A L L +RS + N ++ Sbjct: 1 DERLKQEQQRINARTVTVAVPQALVARLMLASQTGVLRLAVRSADEGNLQDYWANEAGGP 60 Query: 240 QEEGK 244 + + Sbjct: 61 EAAER 65 >gi|305681758|ref|ZP_07404562.1| SAF domain protein [Corynebacterium matruchotii ATCC 14266] gi|305658231|gb|EFM47734.1| SAF domain protein [Corynebacterium matruchotii ATCC 14266] Length = 216 Score = 42.4 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 15/153 (9%), Positives = 48/153 (31%), Gaps = 4/153 (2%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + I+V++ ++A G +T + V E + + + + Sbjct: 39 QHISVVVYSRNVAAGSRITATDVTVVHVSESVLPQDRLATTDAAVGNIVVASRSRGAMVS 98 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 D + + S+ + ++ + + +++P D + ++ + ++ Sbjct: 99 AADFVDSALVSQTMTNTTSNDAGVKTHMVPITLADPT-LASLLRPGDTITII---TAADD 154 Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT 196 V+ + +VI G+ Sbjct: 155 NSAPRVIAAGGKVIFATTKATDFPGATPGTVLV 187 >gi|120603674|ref|YP_968074.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio vulgaris DP4] gi|120563903|gb|ABM29647.1| N-acetylneuraminate synthase [Desulfovibrio vulgaris DP4] Length = 352 Score = 42.4 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 10/91 (10%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 +V P ++ + L++ + G V+ P L W P + Sbjct: 271 VTGMVGPCNITSLPSEEPARRNARRSLVAARAIPAGKVLEPADLTWKR-PAHGISPRCY- 328 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 E+ G+ R I + ++ L Sbjct: 329 --------DEVVGMKARADIAEDTVLKWGHL 351 >gi|46578765|ref|YP_009573.1| NeuB family protein [Desulfovibrio vulgaris str. Hildenborough] gi|46448177|gb|AAS94832.1| NeuB family protein [Desulfovibrio vulgaris str. Hildenborough] gi|311232632|gb|ADP85486.1| N-acetylneuraminate synthase [Desulfovibrio vulgaris RCH1] Length = 352 Score = 42.4 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 10/91 (10%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 +V P ++ + L++ + G V+ P L W P + Sbjct: 271 VTGMVGPCNITSLPSEEPARRNARRSLVAARAIPAGKVLEPADLTWKR-PAHGISPRCY- 328 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 E+ G+ R I + ++ L Sbjct: 329 --------DEVVGMKARADIAEDTVLKWGHL 351 >gi|238764388|ref|ZP_04625338.1| Flagella basal body P-ring formation protein flgA [Yersinia kristensenii ATCC 33638] gi|238697414|gb|EEP90181.1| Flagella basal body P-ring formation protein flgA [Yersinia kristensenii ATCC 33638] Length = 233 Score = 42.4 bits (98), Expect = 0.071, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 6/67 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 ++ L G +TP +E + + G + + G + I G Sbjct: 110 QYAVAARQLTAGAKITPQDIEMKQGRLDTLPPGALLEPSFAQ------GAVSLRQINAGQ 163 Query: 107 PIRLEKL 113 P+ L Sbjct: 164 PLTRNML 170 >gi|261344146|ref|ZP_05971790.1| flagella basal body P-ring formation protein FlgA [Providencia rustigianii DSM 4541] gi|282567739|gb|EFB73274.1| flagella basal body P-ring formation protein FlgA [Providencia rustigianii DSM 4541] Length = 222 Score = 42.4 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 34/159 (21%), Gaps = 39/159 (24%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 ++ ++ G + + + G + L G + I Sbjct: 96 TGQYYVATRNINRGETIEFVDIGTKKGLIHQLPSGAATEKI------ALRGTIALRNITA 149 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-----S 159 G + + IK V V Sbjct: 150 GQTLTNSMVRRPWA---------------------------IKSGQTVHVFATGNNFSVK 182 Query: 160 LSERKPTVTVVLSNIRVIAI-DHNIDSDERVLVGSTATL 197 R V+ NIRV I ++ + + L Sbjct: 183 YEGRAINNAVIGENIRVRLINGQVVNGEAQENGSVQVAL 221 >gi|108809059|ref|YP_652975.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Antiqua] gi|108810744|ref|YP_646511.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Nepal516] gi|167398491|ref|ZP_02304015.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|21960413|gb|AAM87006.1|AE013948_14 putative flagellar protein [Yersinia pestis KIM 10] gi|45437658|gb|AAS63208.1| putative flagellar protein [Yersinia pestis biovar Microtus str. 91001] gi|108774392|gb|ABG16911.1| flagella basal body P-ring formation protein [Yersinia pestis Nepal516] gi|108780972|gb|ABG15030.1| putative flagella basal body P-ring formation protein [Yersinia pestis Antiqua] gi|167050995|gb|EDR62403.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 305 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 19/147 (12%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E V T P ++ + ++K L G V + +E V G+I D E+ Sbjct: 165 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDPD------EIL 218 Query: 95 GVLVRVPILKGDPIRLEKLVDR-----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 G+ ++ I + + +L L G A + I+ + G + Sbjct: 219 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKGEL--- 275 Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRV 176 + V++LS + V + RV Sbjct: 276 -----IKVKNLSSGRVVTATVDGSGRV 297 >gi|54293884|ref|YP_126299.1| flagellar basal body P-ring biosynthesis protein FlgA [Legionella pneumophila str. Lens] gi|53753716|emb|CAH15174.1| hypothetical protein lpl0940 [Legionella pneumophila str. Lens] Length = 233 Score = 42.0 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 22/115 (19%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 VL++K L G ++ + + + + G+ D +EL G++ + I P Sbjct: 110 VLVAKRALLKGTKISNSDIYQTELDVQKLKQGYFTDS------KELIGLVCKHDITPNSP 163 Query: 108 IRLEKLVDRGNGGLSSLLPKGKRA--------ATMDISISSAVGGMIKPNDHVDV 154 + + N L+ L+ KG++ T+ + + G + D V V Sbjct: 164 L------NPFNIELAKLVHKGEQVSIIAAHDNLTVSMDGVAMDEGAL--GDSVKV 210 >gi|145597813|ref|YP_001161889.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Pestoides F] gi|145209509|gb|ABP38916.1| flagella basal body P-ring formation protein [Yersinia pestis Pestoides F] Length = 305 Score = 42.0 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 19/147 (12%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E V T P ++ + ++K L G V + +E V G+I D E+ Sbjct: 165 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDPD------EIL 218 Query: 95 GVLVRVPILKGDPIRLEKLVDR-----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 G+ ++ I + + +L L G A + I+ + G + Sbjct: 219 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKGEL--- 275 Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRV 176 + V++LS + V + RV Sbjct: 276 -----IKVKNLSSGRVVTATVDGSGRV 297 >gi|158313204|ref|YP_001505712.1| SAF domain-containing protein [Frankia sp. EAN1pec] gi|158108609|gb|ABW10806.1| SAF domain protein [Frankia sp. EAN1pec] Length = 221 Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 13/178 (7%) Query: 20 GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79 G+ L+ T + + ++ L G ++ L +V Sbjct: 29 GMAVAALLVVMGAGTGAWAVTSSGDKADAVVLTRPLNRGELIETGDLAIARV---SVEGT 85 Query: 80 FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139 + A + L G + + G + E S+L P G + ++ Sbjct: 86 GVRLASPQAARESLVGRQALLDLPAGTLVTPEM-------AGSALPPAGLARVGLRLAPE 138 Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATL 197 + I+P D V VV T++ ++V A++ + L Sbjct: 139 ALPSAQIQPGDWVQVV---YPDGVSGEPTLIGDAVQVAAVEPAETDGTGGDGDTVVYL 193 >gi|209967011|ref|YP_002299926.1| N-acetylneuraminic acid synthase [Rhodospirillum centenum SW] gi|209960477|gb|ACJ01114.1| N-acetylneuraminic acid synthase [Rhodospirillum centenum SW] Length = 365 Score = 42.0 bits (97), Expect = 0.092, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 10/104 (9%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 A + + + K +++ DL G V+ L + A P + + Sbjct: 272 ARIALGDGVKRRYPSEEKPLYKMAKKIVAARDLPAGHVLAQEDLAFKA-PNDGLPPY--- 327 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 L G+ + P+ + + I L +++P Sbjct: 328 ------HADHLVGMRLTRPLAEDEAIGYADLTSEDAPASPAVVP 365 >gi|289424445|ref|ZP_06426228.1| SAF domain protein [Propionibacterium acnes SK187] gi|289155142|gb|EFD03824.1| SAF domain protein [Propionibacterium acnes SK187] Length = 205 Score = 42.0 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ + G V+ + L V + + +++G + I +G Sbjct: 37 EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 89 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + ++ S + GK + ++ SS V GM++ V VV Sbjct: 90 ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDGTPHVL 142 Query: 167 VT 168 Sbjct: 143 TR 144 >gi|220932493|ref|YP_002509401.1| Flagellar basal body P-ring biosynthesis protein [Halothermothrix orenii H 168] gi|219993803|gb|ACL70406.1| Flagellar basal body P-ring biosynthesis protein [Halothermothrix orenii H 168] Length = 336 Score = 42.0 bits (97), Expect = 0.093, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 7/132 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL++ ++ G + L V I+D + P L +V++P+ KG+ Sbjct: 210 KVLVATRNIKRGSNICKEDLALTTEKITGVRGEIINDFNDP----RLSYSIVKIPLQKGE 265 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + + L ++ + +S S G + D+V V+ + + Sbjct: 266 ILTTDHLEQPVVIHWGDIVEAEVIVRNVKVSTSVKALGSGRVGDYVKVI--NPETGYEFK 323 Query: 167 VTVVLSN-IRVI 177 V+ S +RV+ Sbjct: 324 ARVINSRLVRVV 335 >gi|317486066|ref|ZP_07944919.1| NeuB family protein [Bilophila wadsworthia 3_1_6] gi|316922693|gb|EFV43926.1| NeuB family protein [Bilophila wadsworthia 3_1_6] Length = 352 Score = 42.0 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 10/90 (11%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 + ++ ++ L++ ++ G ++ + L W G I Sbjct: 272 LSMIGEMRIEALASEEPARQNARRSLVANRNIPAGKIIDKDDLTWKR------PAGGIS- 324 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 P E+ G+ R I + ++ L Sbjct: 325 ---PRHYYEVLGMAARADIEEDTVLQWAHL 351 >gi|297570919|ref|YP_003696693.1| SAF domain protein [Arcanobacterium haemolyticum DSM 20595] gi|296931266|gb|ADH92074.1| SAF domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 194 Score = 42.0 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 53/173 (30%), Gaps = 34/173 (19%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R +++ V + G L+S + V + D+A G + Sbjct: 9 RKARDPRLLLGMVLVIGGGTAGALLMS-------------EPDSVLVPQATTDVAAGDTL 55 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 N V P + + + G + + + G+ + + + G Sbjct: 56 DKNNFTLVQMPRDIAHSYV-------HGLDFAPGSITQRSLSAGEFLPENAVGKKNVGI- 107 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174 A + + SSA +KP ++V V ++ ++ + Sbjct: 108 -------DIAVPVAVPQSSA----LKPGTTINVWRVPR--DKDAHSEIIARDA 147 >gi|312199830|ref|YP_004019891.1| SAF domain protein [Frankia sp. EuI1c] gi|311231166|gb|ADP84021.1| SAF domain protein [Frankia sp. EuI1c] Length = 287 Score = 41.6 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 69/243 (28%), Gaps = 57/243 (23%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 ++ + LV+ ++ RL + + + +K DL G VV+ L Sbjct: 47 LIFGILIVLVSVVLGARLFATADRTSAW------------VAAKADLPAGHVVSAGDLVT 94 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128 V + D + ++E+ G + P+ GD I Sbjct: 95 VR---AQLSDATAGRYYPGRRLKEVVGGTLARPVGAGDLISGSDFAGPDTAA-------- 143 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI---------RVIAI 179 R + + + + P DHVDV + ++ + + A Sbjct: 144 TRLVPIVV--QAGRLPDLAPGDHVDVYVFQASGAVGAGDASSGTGGSGGTGNATGQSTAT 201 Query: 180 DHNIDSDERVLVG-----------------------STATLELTPMQAKALVAAQSVAKL 216 + + G + TL + A VAA ++ Sbjct: 202 GQSTGVGTPAVGGAGAEVLVLHDVEFLGQQRIASGDRSLTLRVPVDAAIRAVAASQSGRV 261 Query: 217 SLV 219 +V Sbjct: 262 DVV 264 >gi|309812059|ref|ZP_07705820.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] gi|308433991|gb|EFP57862.1| conserved hypothetical protein [Dermacoccus sp. Ellin185] Length = 226 Score = 41.6 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 67/224 (29%), Gaps = 37/224 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R + +V ++ + + + V +K L G Sbjct: 27 MKDVRWVVGIVLLALGVLGTLRVIGSFDDS---------------VQVWSAKSALVPGQR 71 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + L ++ ++ QP G +V+ + G+ + + D Sbjct: 72 LTSSDLVPTRVRLDDRGGQYLSSATQP-------GGVVQRAVGAGELVPKNAVGD----- 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV----TVVLSNIRV 176 G + +++ +I+ V+V + T + V Sbjct: 120 -----ASGVTVRALSVNVERGQADVIRAGGDVEVWVSDKKEGAGSTGFDKPHQSVERALV 174 Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLV 219 + V GS + + A++ A + +++LV Sbjct: 175 SHVGSRSGGVVAVADGSPVEILVPRESLPAMIDAVNSGARITLV 218 >gi|328953564|ref|YP_004370898.1| N-acetylneuraminate synthase [Desulfobacca acetoxidans DSM 11109] gi|328453888|gb|AEB09717.1| N-acetylneuraminate synthase [Desulfobacca acetoxidans DSM 11109] Length = 347 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 10/65 (15%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ D+ G +TP +LE PE V ++ G + + P+ + I Sbjct: 293 LVANQDIPQGTKLTPEMLEGKR-PEPGVSPEYL---------DFFVGRVTKRPLKYNEAI 342 Query: 109 RLEKL 113 + + Sbjct: 343 SWDDI 347 >gi|114321516|ref|YP_743199.1| N-acetylneuraminate synthase [Alkalilimnicola ehrlichii MLHE-1] gi|114227910|gb|ABI57709.1| N-acetylneuraminate synthase [Alkalilimnicola ehrlichii MLHE-1] Length = 348 Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 10/91 (10%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 +S + + +++ DL G + L + P V Sbjct: 268 AWAMSRPAAEITAAEESARTQARRSVVAATDLPAGTTLAAGHLAYKR-PGTGVP------ 320 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 P ++L G + V + + I +KL Sbjct: 321 ---PTQAEDLIGRRLAVDLAHDELITPDKLA 348 >gi|303325648|ref|ZP_07356091.1| NeuB family protein [Desulfovibrio sp. 3_1_syn3] gi|302863564|gb|EFL86495.1| NeuB family protein [Desulfovibrio sp. 3_1_syn3] Length = 353 Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 10/87 (11%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 V V+ L++ + G +TP L W P + Sbjct: 274 VGDLDVRALPAEEPARQHARRSLVTTRAVPAGQALTPADLTWKR-PAHGIS--------- 323 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKL 113 P E+ G+ R + + + L Sbjct: 324 PRNYDEVLGLRARRDLPEDTVLTWADL 350 >gi|111220768|ref|YP_711562.1| hypothetical protein FRAAL1311 [Frankia alni ACN14a] gi|111148300|emb|CAJ59972.1| hypothetical protein; putative signal peptide [Frankia alni ACN14a] Length = 260 Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 13/128 (10%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + +++KG L G V+ L V+ + G + +++L G + Sbjct: 53 ASADATRQWVVAKGSLPAGHVIVAGDLTTVSARLDARTSG---RYYPGGRLRDLTGATLA 109 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 P+ G+ + R R + + ++P DHVDV + + Sbjct: 110 RPVDAGELVSGADFAGRNTQS--------TRLVPVIVKA--GRLPALEPGDHVDVYVFSA 159 Query: 160 LSERKPTV 167 S Sbjct: 160 GSAAATGS 167 >gi|332674895|gb|AEE71711.1| hypothetical protein PAZ_c05150 [Propionibacterium acnes 266] Length = 194 Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 14/129 (10%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + V+++ + G V+ + L V + + +++G Sbjct: 30 AASSSGREVIVAAHAIEGGRVIQRSDLHTVRIDHGVLPHETAT-------LAQVEGRQAS 82 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 + I +G + ++ S + GK + ++ SS V GM++ V VV Sbjct: 83 IRITEGTILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSE 135 Query: 160 LSERKPTVT 168 Sbjct: 136 DGTPHVLTR 144 >gi|195952533|ref|YP_002120823.1| flagella basal body P-ring formation protein FlgA [Hydrogenobaculum sp. Y04AAS1] gi|195932145|gb|ACG56845.1| flagella basal body P-ring formation protein FlgA [Hydrogenobaculum sp. Y04AAS1] Length = 235 Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 + V+++K + G ++T + ++ V + + +++ G I G Sbjct: 106 VPVIVAKKLITRGQIITKDDIKSAVKYIRFVPQNLV------VSKRQVIGATALQNIGIG 159 Query: 106 DPIRLEKLVDRG 117 +PIR + Sbjct: 160 EPIRTSMISMVP 171 >gi|148360444|ref|YP_001251651.1| flagella basal body P-ring formation protein FlgA [Legionella pneumophila str. Corby] gi|296106491|ref|YP_003618191.1| flagella basal body P-ring formation protein FlgA [Legionella pneumophila 2300/99 Alcoy] gi|148282217|gb|ABQ56305.1| flagella basal body P-ring formation protein FlgA [Legionella pneumophila str. Corby] gi|295648392|gb|ADG24239.1| flagella basal body P-ring formation protein FlgA [Legionella pneumophila 2300/99 Alcoy] gi|307609702|emb|CBW99212.1| hypothetical protein LPW_09931 [Legionella pneumophila 130b] Length = 233 Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 22/115 (19%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 VL++K L G ++ + + + + G+ D +EL G++ + I P Sbjct: 110 VLVAKRALLKGTKISNSDIYQTELDVQKLKQGYFTDS------KELIGLVCKHDITPNSP 163 Query: 108 IRLEKLVDRGNGGLSSLLPKGKRA--------ATMDISISSAVGGMIKPNDHVDV 154 + + N L+ L+ KG++ T+ + + G + D V V Sbjct: 164 L------NPFNIELAKLVHKGEQVSIIAAHDNLTVSMDGIAMDEGAL--GDSVKV 210 >gi|52841143|ref|YP_094942.1| flagellar basal body P-ring biosynthesis protein FlgA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54296929|ref|YP_123298.1| flagellar basal body P-ring biosynthesis protein FlgA [Legionella pneumophila str. Paris] gi|52628254|gb|AAU26995.1| flagella basal body P-ring formation protein FlgA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53750714|emb|CAH12121.1| hypothetical protein lpp0970 [Legionella pneumophila str. Paris] Length = 233 Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 22/115 (19%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 VL++K L G ++ + + + + G+ D +EL G++ + I P Sbjct: 110 VLVAKRALLKGTKISNSDIYQTELDVQKLKQGYFTDS------KELIGLVCKHDITPNSP 163 Query: 108 IRLEKLVDRGNGGLSSLLPKGKRA--------ATMDISISSAVGGMIKPNDHVDV 154 + + N L+ L+ KG++ T+ + + G + D V V Sbjct: 164 L------NPFNIELAKLVHKGEQVSIIAAHDNLTVSMDGIAMDEGAL--GDSVKV 210 >gi|311105931|ref|YP_003978784.1| flagella basal body P-ring formation protein FlgA [Achromobacter xylosoxidans A8] gi|310760620|gb|ADP16069.1| flagella basal body P-ring formation protein FlgA [Achromobacter xylosoxidans A8] Length = 237 Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 6/106 (5%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ +A G +TP+ L + G I D Q + G+ I G + Sbjct: 116 YVAARLIAAGQALTPDDLAPRDGDLIALPPGAITDP------QAVAGMTAVHRINAGQAV 169 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 R L + + + + R +S P V V Sbjct: 170 RSSGLRNAQSVLRGANVRINARGKGFVVSSEGQALDNAAPGATVQV 215 >gi|238788311|ref|ZP_04632105.1| Flagella basal body P-ring formation protein flgA [Yersinia frederiksenii ATCC 33641] gi|238723557|gb|EEQ15203.1| Flagella basal body P-ring formation protein flgA [Yersinia frederiksenii ATCC 33641] Length = 226 Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ L G +TP +E + + G + + H G + I G P+ Sbjct: 106 VAARRLPSGAKITPEDIEMKQGRLDTLPPGALLEPHFAQ------GAVSLRQINAGQPLT 159 Query: 110 LEKL 113 L Sbjct: 160 RNML 163 >gi|94264703|ref|ZP_01288484.1| N-acylneuraminate-9-phosphate synthase [delta proteobacterium MLMS-1] gi|93454869|gb|EAT05116.1| N-acylneuraminate-9-phosphate synthase [delta proteobacterium MLMS-1] Length = 749 Score = 41.3 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 15/107 (14%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L+ DL G ++ +++E + P + + QPN ++EL G + GD Sbjct: 406 LVINQDLTQGEMIQRDMIEVKS-PGQGL---------QPNRLEELVGKVAVRDFRAGDFF 455 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + + R + + + +D V Sbjct: 456 FESDIKPKAQRKSHYTFN---RPYGIPVRYHDY--KKLSAGIQIDFV 497 >gi|289428376|ref|ZP_06430062.1| SAF domain protein [Propionibacterium acnes J165] gi|289158348|gb|EFD06565.1| SAF domain protein [Propionibacterium acnes J165] Length = 194 Score = 41.3 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 14/133 (10%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 + V+++ + G V+ + L V + + +++G Sbjct: 26 SPGMAASSSGREVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEG 78 Query: 96 VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + I +G + ++ S + GK + ++ SS V GM++ V VV Sbjct: 79 RQASIRITEGTILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVV 131 Query: 156 MVRSLSERKPTVT 168 Sbjct: 132 SPSEDGTPHVLTR 144 >gi|228911107|ref|ZP_04074913.1| NeuB family member [Bacillus thuringiensis IBL 200] gi|229072734|ref|ZP_04205934.1| NeuB family member [Bacillus cereus F65185] gi|228710360|gb|EEL62334.1| NeuB family member [Bacillus cereus F65185] gi|228848470|gb|EEM93318.1| NeuB family member [Bacillus thuringiensis IBL 200] Length = 350 Score = 41.3 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 10/88 (11%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 ++ + E + L++ GD+ G V+T +L W P + ++ Sbjct: 273 VLGEKTKKPTEAEKQAIKYARRSLVATGDIEEGTVITREMLTWKR-PGTGISPKYL---- 327 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKL 113 + + G+ V I + D I E L Sbjct: 328 -----ETIIGLKVTKNIKEDDVITWEML 350 >gi|238785501|ref|ZP_04629484.1| Flagella basal body P-ring formation protein flgA [Yersinia bercovieri ATCC 43970] gi|238713603|gb|EEQ05632.1| Flagella basal body P-ring formation protein flgA [Yersinia bercovieri ATCC 43970] Length = 234 Score = 41.3 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 6/67 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +++ LA G +T +E + + G + + H G + I G Sbjct: 111 RYVVATRQLAAGAKITAQDVEMKQGRLDTLPPGALLEPHFAQ------GAVSLRQINAGQ 164 Query: 107 PIRLEKL 113 P+ L Sbjct: 165 PLTRNML 171 >gi|154486709|ref|ZP_02028116.1| hypothetical protein BIFADO_00530 [Bifidobacterium adolescentis L2-32] gi|154084572|gb|EDN83617.1| hypothetical protein BIFADO_00530 [Bifidobacterium adolescentis L2-32] Length = 206 Score = 41.3 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 47/137 (34%), Gaps = 15/137 (10%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 ++++ ++A G +T +E P + + + G++ Sbjct: 14 VRAAIATQPIVVAVRNVAKGTAITREAVELREAPSDGSLSNAFHT------LDDAVGLIA 67 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 +V I D + S ++P+G + + ++ +V + P D V + Sbjct: 68 QVGIGAHDVLMSGM------ARASPVVPQGHTSIEVRLA---SVADGLIPGDKVTLSSAT 118 Query: 159 SLSERKPTVTVVLSNIR 175 + T ++++ Sbjct: 119 MTDAEMQSGTPNVADMP 135 >gi|209364155|ref|YP_001425048.2| hypothetical protein CBUD_1715 [Coxiella burnetii Dugway 5J108-111] gi|207082088|gb|ABS78088.2| hypothetical exported protein [Coxiella burnetii Dugway 5J108-111] Length = 394 Score = 41.3 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 80/240 (33%), Gaps = 42/240 (17%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R ++ A+VA I+ + + + A +++L+S ++ Sbjct: 31 MKKSR-FLLIFLVALAIVAMILGLWRPLERRLHPTSNPKSSEAPQVSILVSGLEVP---- 85 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + D + + E G ++ + + G P+ V Sbjct: 86 ----------WALSFLPD-------RDLLVTERKGRVLLIDLQSGKPVIK---VIAKINE 125 Query: 121 LSSLLPKGKRAATMDISISSAVGGMI-----KPNDHVDVVMVRS-LSERKPTVTVVLSNI 174 ++S+ G + + + +V+ V+ ++ + ++L NI Sbjct: 126 VASVAESGLSGIAVHPHFQQNHWIYLYYTYRRNGRYVNKVVRYELMNNQLTNPKIILDNI 185 Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS----VAKLSLVLRSIADLNPSS 230 + R+ G L +T A+ AAQ+ K+ LR D + + Sbjct: 186 ----LAARTHDGGRIKFGPDGYLYITTGDAQVAKAAQNPKSLAGKI---LRIKDDGSIPA 238 >gi|27381082|ref|NP_772611.1| polysaccharide biosynthesis related protein [Bradyrhizobium japonicum USDA 110] gi|27354248|dbj|BAC51236.1| blr5971 [Bradyrhizobium japonicum USDA 110] Length = 641 Score = 40.9 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 10/65 (15%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ D+ G V++ + + + P + + P M L G +++ + D Sbjct: 299 LVAARDIEAGTVISDDDIAVKS-PGQGLS---------PLKMPALIGKILKRKMAADDYF 348 Query: 109 RLEKL 113 L Sbjct: 349 FQSDL 353 >gi|153207242|ref|ZP_01946006.1| glucose/sorbosone dehydrogenase [Coxiella burnetii 'MSU Goat Q177'] gi|120576730|gb|EAX33354.1| glucose/sorbosone dehydrogenase [Coxiella burnetii 'MSU Goat Q177'] Length = 369 Score = 40.9 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 42/240 (17%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R ++ A+VA I+ + + + A +++L+S ++ Sbjct: 6 MKKSR-FLLIFLVALAIVAMILGLWRPLERRLHPTSNPKSSEAPQVSILVSGLEVP---- 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + D + + E G ++ + + G P+ V Sbjct: 61 ----------WALSFLPD-------RDLLVTERKGRVLLIDLQSGKPVIK---VVAKINE 100 Query: 121 LSSLLPKGKRAATMDISISSAVGGMI-----KPNDHVDVVMVRS-LSERKPTVTVVLSNI 174 ++S+ G + + + +V+ V+ ++ + ++L NI Sbjct: 101 VASVAESGLSGIAVHPHFQQNHWIYLYYTYRRNGRYVNKVVRYELMNNQLTNPKIILDNI 160 Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS----VAKLSLVLRSIADLNPSS 230 L +T A+ AAQ+ K+ LR D + + Sbjct: 161 LAARTHDGGRIKFGPDGY----LYITTGDAQVAKAAQNPKSLAGKI---LRIKDDGSIPA 213 >gi|295130055|ref|YP_003580718.1| SAF domain protein [Propionibacterium acnes SK137] gi|291376350|gb|ADE00205.1| SAF domain protein [Propionibacterium acnes SK137] Length = 194 Score = 40.9 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ + G V+ + L V + + +++G + I +G Sbjct: 37 EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 89 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + ++ S + GK + ++ SS V GM++ V VV Sbjct: 90 ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDGTPHVL 142 Query: 167 VT 168 Sbjct: 143 TR 144 >gi|212218192|ref|YP_002304979.1| hypothetical protein CbuK_0559 [Coxiella burnetii CbuK_Q154] gi|212012454|gb|ACJ19834.1| hypothetical exported protein [Coxiella burnetii CbuK_Q154] Length = 394 Score = 40.9 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 42/240 (17%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R ++ A+VA I+ + + + A +++L+S ++ Sbjct: 31 MKKSR-FLLIFLVALAIVAMILGLWRPLERRLHPTSNPKSSEAPQVSILVSGLEVP---- 85 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + D + + E G ++ + + G P+ V Sbjct: 86 ----------WALSFLPD-------RDLLVTERKGRVLLIDLQSGKPVIK---VVAKINE 125 Query: 121 LSSLLPKGKRAATMDISISSAVGGMI-----KPNDHVDVVMVRS-LSERKPTVTVVLSNI 174 ++S+ G + + + +V+ V+ ++ + ++L NI Sbjct: 126 VASVAESGLSGIAVHPHFQQNHWIYLYYTYRRNGRYVNKVVRYELMNNQLTNPKIILDNI 185 Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS----VAKLSLVLRSIADLNPSS 230 L +T A+ AAQ+ K+ LR D + + Sbjct: 186 LAARTHDGGRIKFGPDGY----LYITTGDAQVAKAAQNPKSLAGKI---LRIKDDGSIPA 238 >gi|114330357|ref|YP_746579.1| flagellar basal body P-ring biosynthesis protein FlgA [Nitrosomonas eutropha C91] gi|114307371|gb|ABI58614.1| putative flagella basal body P-ring formation protein [Nitrosomonas eutropha C91] Length = 231 Score = 40.9 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 6/71 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 NV+ + + +G +V + + G + D ++ G + + G Sbjct: 108 NVIHAAQPINMGKLVDTQDIVSKEVDLVRIPAGAVTDPD------QVVGKVAVTFLASGQ 161 Query: 107 PIRLEKLVDRG 117 PIR +L Sbjct: 162 PIRTHQLRAPY 172 >gi|150260253|ref|ZP_01916981.1| lateral flagellar P-ring addition protein [Yersinia pestis CA88-4125] gi|162419782|ref|YP_001604851.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Angola] gi|165925092|ref|ZP_02220924.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. F1991016] gi|165939099|ref|ZP_02227651.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. IP275] gi|166008979|ref|ZP_02229877.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. E1979001] gi|166211927|ref|ZP_02237962.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. B42003004] gi|167418801|ref|ZP_02310554.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425137|ref|ZP_02316890.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466345|ref|ZP_02331049.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis FV-1] gi|229837404|ref|ZP_04457567.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis Pestoides A] gi|229840617|ref|ZP_04460776.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842832|ref|ZP_04462984.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis biovar Orientalis str. India 195] gi|229900941|ref|ZP_04516065.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis Nepal516] gi|294502784|ref|YP_003566846.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Z176003] gi|149289661|gb|EDM39738.1| lateral flagellar P-ring addition protein [Yersinia pestis CA88-4125] gi|162352597|gb|ABX86545.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Angola] gi|165913055|gb|EDR31680.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. IP275] gi|165923292|gb|EDR40443.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. F1991016] gi|165992318|gb|EDR44619.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. E1979001] gi|166206673|gb|EDR51153.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. B42003004] gi|166962795|gb|EDR58816.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055900|gb|EDR65681.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682280|gb|EEO78372.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis Nepal516] gi|229690099|gb|EEO82156.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis biovar Orientalis str. India 195] gi|229696983|gb|EEO87030.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705527|gb|EEO91537.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis Pestoides A] gi|262360816|gb|ACY57537.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis D106004] gi|262364761|gb|ACY61318.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis D182038] gi|294353243|gb|ADE63584.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Z176003] gi|320016715|gb|ADW00287.1| Flagellar basal-body P-ring formation proteinflgA [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 282 Score = 40.9 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 19/147 (12%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E V T P ++ + ++K L G V + +E V G+I D E+ Sbjct: 142 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDPD------EIL 195 Query: 95 GVLVRVPILKGDPIRLEKLVDR-----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 G+ ++ I + + +L L G A + I+ + G + Sbjct: 196 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKGEL--- 252 Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRV 176 + V++LS + V + RV Sbjct: 253 -----IKVKNLSSGRVVTATVDGSGRV 274 >gi|314980540|gb|EFT24634.1| SAF domain protein [Propionibacterium acnes HL072PA2] gi|315087573|gb|EFT59549.1| SAF domain protein [Propionibacterium acnes HL072PA1] Length = 166 Score = 40.9 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 14/129 (10%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + V+++ + G V+ + L V + + +++G Sbjct: 2 AASSSGREVIVAAHAIEGGRVIQRSDLHTVRIDPGILPHETAT-------LAQVEGRQAS 54 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 + I +G + ++ S + GK + ++ SS V GM++ V VV Sbjct: 55 IRITEGTILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSE 107 Query: 160 LSERKPTVT 168 Sbjct: 108 DGTPHVLTR 116 >gi|313835437|gb|EFS73151.1| SAF domain protein [Propionibacterium acnes HL037PA2] gi|314928544|gb|EFS92375.1| SAF domain protein [Propionibacterium acnes HL044PA1] gi|314970476|gb|EFT14574.1| SAF domain protein [Propionibacterium acnes HL037PA3] Length = 191 Score = 40.9 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 14/122 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ + G V+ + L + + A+ +++G V I +G Sbjct: 34 EVVVAARAIEGGRVIQRSDLRTIRIDPGILPHEA-------AALAQVEGRQASVRITEGT 86 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + ++ G GK + ++ SS V GM++ V VV Sbjct: 87 ILTTSAVLSGSATG------SGKALVGIHLADSSMV-GMLQVGQQVSVVSPSEDGTPHVL 139 Query: 167 VT 168 Sbjct: 140 TR 141 >gi|326803994|ref|YP_004321812.1| SAF domain protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651288|gb|AEA01471.1| SAF domain protein [Aerococcus urinae ACS-120-V-Col10a] Length = 354 Score = 40.9 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 10/94 (10%) Query: 20 GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79 G+ V V E ++ D+ G ++T ++L + P + G Sbjct: 269 GLEFQMKVRGQAVADLEAQAAARKNARRSIVLTQDVKAGTILTEDMLTFKR-PGTGIAPG 327 Query: 80 FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 ++E+ G V + + + + L Sbjct: 328 ---------KVKEVIGRKVNQDLAEDTTLMEDML 352 >gi|292490649|ref|YP_003526088.1| flagella basal body P-ring formation protein FlgA [Nitrosococcus halophilus Nc4] gi|291579244|gb|ADE13701.1| flagella basal body P-ring formation protein FlgA [Nitrosococcus halophilus Nc4] Length = 221 Score = 40.9 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ L G ++ + E + G++ D ++ G ++ P+ G Sbjct: 97 KVVVATHPLVPGSPLSLADIHLERRNLEQLRQGYLRDPA------QVAGKRLKRPLGLGA 150 Query: 107 PIRLEKLVDRG 117 I E L Sbjct: 151 VITPEVLEIPK 161 >gi|220934388|ref|YP_002513287.1| Flagellar basal body P-ring biosynthesis protein-like protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995698|gb|ACL72300.1| Flagellar basal body P-ring biosynthesis protein-like protein [Thioalkalivibrio sp. HL-EbGR7] Length = 262 Score = 40.9 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 10/110 (9%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V++ L GM + L + G+++D ++ +++R + G Sbjct: 138 EVVVLGHPLPRGMQLEAQHLRLERHDVGALPGGYLND------LELARDMVLRRALPAGT 191 Query: 107 PIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + + + G L A + + + G + V V Sbjct: 192 VLTPQMVEPPRLVRRGQRVTLLAEGSAVNVRVEGEALADG--SRGERVQV 239 >gi|238762406|ref|ZP_04623377.1| tight adherance operon protein [Yersinia kristensenii ATCC 33638] gi|238699391|gb|EEP92137.1| tight adherance operon protein [Yersinia kristensenii ATCC 33638] Length = 277 Score = 40.9 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 31/284 (10%), Positives = 82/284 (28%), Gaps = 40/284 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + + V + GI+ + I + S DL G + Sbjct: 1 MNRKFILLLSLLIVVVGIIGILINIDNDEKKPYNSSELDSEKEVNIALAQSTHDLPSGTI 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + +V + + +++ L++ +L G + L+ + Sbjct: 61 LRRQDYAIKKL---SVKESSELVESNISNSTDINSYLLKENVLSGSYLTKNMLISPNSDE 117 Query: 121 L-SSLLPKGKRAATMDISISS-AVGGMIKPNDHVDV----VMVRSLSERKPTVTV----- 169 +L KG ++ + + D + + T+ Sbjct: 118 FNHLILKKGNVIYKFNLKKQDEYLLDSLNIGDWLSFQLRTLETDKRKGMDNGTTINKKGM 177 Query: 170 ------------VLSNIRVIAIDHNID------SDERVLVGSTAT--LEL--TPMQAKAL 207 ++ + ++ I + + + T + +E+ + Sbjct: 178 NDRQRQSYSLSKLIQKMEIVRIKKYSESELSEINGKNQKTEETLSGYIEVIINMQDLDLI 237 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 A++ + L SI D S + D+ E + I+ ++ Sbjct: 238 YLAEASGDIILT-PSIDDEKHKS---KYLHDILPELRTIRELRG 277 >gi|238751758|ref|ZP_04613246.1| Flagella basal body P-ring formation protein flgA [Yersinia rohdei ATCC 43380] gi|238710029|gb|EEQ02259.1| Flagella basal body P-ring formation protein flgA [Yersinia rohdei ATCC 43380] Length = 224 Score = 40.5 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G +TP + + + G + + + G + I G P+ Sbjct: 104 VAARQLASGAKITPQDIVMKQGRLDTLPPGALLEPNFAQ------GAVSLRQINAGQPLT 157 Query: 110 LEKL 113 L Sbjct: 158 RNML 161 >gi|238762363|ref|ZP_04623334.1| Flagella basal body P-ring formation protein FlgA [Yersinia kristensenii ATCC 33638] gi|238699348|gb|EEP92094.1| Flagella basal body P-ring formation protein FlgA [Yersinia kristensenii ATCC 33638] Length = 249 Score = 40.5 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 64/153 (41%), Gaps = 17/153 (11%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E +T P ++ V ++K L G +V P+ +E G+I + E+ Sbjct: 109 EVSVTVKPDIYLPVWVAKSTLERGKLVAPDDIELKKKNISTAQGGYITNPD------EIV 162 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS---ISSAVGGMIKPNDH 151 G+ V+ I + +L L+ +G++ + + +G +K Sbjct: 163 GLTVKRRIRGLQVVTPSQLEQP------VLVTRGQQVLMIAEQEGIEARMLGEALKNGRK 216 Query: 152 VDVVMVRSLSERKPTVTVV--LSNIRVIAIDHN 182 +++ V++LS ++ +V ++ +R++ I + Sbjct: 217 GELIKVKNLSSKRTVTAIVDDIARVRMLGIASS 249 >gi|33864930|ref|NP_896489.1| putative N-acetylneuraminic acid synthetase [Synechococcus sp. WH 8102] gi|33638614|emb|CAE06909.1| putative N-acetylneuraminic acid synthetase [Synechococcus sp. WH 8102] Length = 754 Score = 40.5 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 13/88 (14%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ D+ G +T ++ + P + + QPN + +L G + V +G+ Sbjct: 409 LVAACDVPAGTEITEAMVRIQS-PGQGL---------QPNRLNDLIGRRLPVAKAQGEVF 458 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDI 136 L K+ + + Sbjct: 459 FPSDLETPAATPRHYRF---KQPFGLPV 483 >gi|314969437|gb|EFT13535.1| SAF domain protein [Propionibacterium acnes HL037PA1] Length = 166 Score = 40.5 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ + G V+ + L V + + +++G + I +G Sbjct: 9 EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 61 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + ++ S + GK + ++ SS V GM++ V VV Sbjct: 62 ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDGTPHVL 114 Query: 167 VT 168 Sbjct: 115 TR 116 >gi|304437404|ref|ZP_07397363.1| possible N-acylneuraminate-9-phosphate synthase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369660|gb|EFM23326.1| possible N-acylneuraminate-9-phosphate synthase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 350 Score = 40.5 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 10/94 (10%), Positives = 29/94 (30%), Gaps = 10/94 (10%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 + + + K ++ DL G + L P + Sbjct: 263 MVQMGLGSEEREVFPEELAQRRKMRRSVVVVKDLPEGHTLCAEDLYAKR-PGTGIP---- 317 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 P+ ++ L G +R + + ++ + +++ Sbjct: 318 -----PDRIELLVGKTLRRAVKEDTLLQEDDILE 346 >gi|313806640|gb|EFS45147.1| SAF domain protein [Propionibacterium acnes HL087PA2] gi|313826714|gb|EFS64428.1| SAF domain protein [Propionibacterium acnes HL063PA1] gi|327333556|gb|EGE75276.1| SAF domain protein [Propionibacterium acnes HL096PA3] gi|327445418|gb|EGE92072.1| SAF domain protein [Propionibacterium acnes HL013PA2] Length = 166 Score = 40.5 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 14/129 (10%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + V+++ + G V+ + L V + + +++G Sbjct: 2 AASSSGREVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQAS 54 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 + I +G + ++ S + GK + ++ SS V GM++ V VV Sbjct: 55 IRITEGTILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSE 107 Query: 160 LSERKPTVT 168 Sbjct: 108 DGTPHVLTR 116 >gi|170022967|ref|YP_001719472.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis YPIII] gi|186896775|ref|YP_001873887.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis PB1/+] gi|51590923|emb|CAH22579.1| Putative flagella basal body P-ring formation protein [Yersinia pseudotuberculosis IP 32953] gi|169749501|gb|ACA67019.1| flagella basal body P-ring formation protein FlgA [Yersinia pseudotuberculosis YPIII] gi|186699801|gb|ACC90430.1| flagella basal body P-ring formation protein FlgA [Yersinia pseudotuberculosis PB1/+] Length = 272 Score = 40.5 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 11/117 (9%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E V T P ++ + ++K L G V + +E V G+I D E+ Sbjct: 132 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDPD------EIL 185 Query: 95 GVLVRVPILKGDPIRLEKLVDR-----GNGGLSSLLPKGKRAATMDISISSAVGGMI 146 G+ ++ I + + +L L G A + I+ + G + Sbjct: 186 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKGEL 242 >gi|327455631|gb|EGF02286.1| SAF domain protein [Propionibacterium acnes HL083PA2] Length = 166 Score = 40.5 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ + G V+ + L V + + +++G + I +G Sbjct: 9 EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 61 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + ++ S + GK + ++ SS V GM++ V VV Sbjct: 62 ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDGTPHVL 114 Query: 167 VT 168 Sbjct: 115 TR 116 >gi|183601919|ref|ZP_02963288.1| hypothetical protein BIFLAC_06556 [Bifidobacterium animalis subsp. lactis HN019] gi|241190409|ref|YP_002967803.1| hypothetical protein Balac_0354 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195815|ref|YP_002969370.1| hypothetical protein Balat_0354 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218804|gb|EDT89446.1| hypothetical protein BIFLAC_06556 [Bifidobacterium animalis subsp. lactis HN019] gi|240248801|gb|ACS45741.1| hypothetical protein Balac_0354 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250369|gb|ACS47308.1| hypothetical protein Balat_0354 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793396|gb|ADG32931.1| hypothetical protein BalV_0343 [Bifidobacterium animalis subsp. lactis V9] Length = 185 Score = 40.5 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 71/215 (33%), Gaps = 36/215 (16%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M + +S AL + + L +++ DL G+V+ + Sbjct: 1 MLLALSVGVALFCTLQCVAL---------------ATATRQAVVAARDLDAGLVIATGDV 45 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 E V P+ + + + G++ + I KGD + + G +P Sbjct: 46 EMVEMPDHDALRHAL------GCPDDAVGLVTQTRIEKGDILLTTDV------GELPQVP 93 Query: 127 KGKRAATMDISISSAVGGMIKP-NDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDS 185 + + + +G P V++ ++ ++ V + + Sbjct: 94 EHHTVIDVRL----GLGQHSFPIGTVVELRSTQACADDARASP---EGCVVSSHAVVMAQ 146 Query: 186 DERVLVGSTAT-LELTPMQAKALVAAQSVAKLSLV 219 GST T + ++ ++A ++AAQ L Sbjct: 147 PRLDDTGSTVTQMAMSAVEALQVLAAQEHGTLIAA 181 >gi|313792921|gb|EFS40988.1| SAF domain protein [Propionibacterium acnes HL110PA1] gi|313802627|gb|EFS43849.1| SAF domain protein [Propionibacterium acnes HL110PA2] gi|313840265|gb|EFS77979.1| SAF domain protein [Propionibacterium acnes HL086PA1] gi|314964338|gb|EFT08438.1| SAF domain protein [Propionibacterium acnes HL082PA1] gi|315078648|gb|EFT50679.1| SAF domain protein [Propionibacterium acnes HL053PA2] gi|327456876|gb|EGF03531.1| SAF domain protein [Propionibacterium acnes HL092PA1] Length = 166 Score = 40.5 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ + G V+ + L V + + +++G + I +G Sbjct: 9 EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 61 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + ++ S + GK + ++ SS V GM++ V VV Sbjct: 62 ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPNEDGTPHVL 114 Query: 167 VT 168 Sbjct: 115 TR 116 >gi|311067384|ref|YP_003972307.1| YhbJ protein [Bacillus atrophaeus 1942] gi|310867901|gb|ADP31376.1| YhbJ [Bacillus atrophaeus 1942] Length = 210 Score = 40.5 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 53/169 (31%), Gaps = 27/169 (15%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53 M RL+ I + V A++ G S ++V+T+E I ++ Sbjct: 1 MNRGRLILTNIIGLIVVLAIIGGGAYYYYQSTNYVKTDEAKVAGDMSAITAPVAGKVTDW 60 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 +L G V + + I + +DG +V+ + G Sbjct: 61 NLTEGKEVKKDDVVAK-----------IKGEKSVDIKSIMDGTIVKNEVKNGQ------- 102 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 + ++ + + +I I+ + VD+V+ Sbjct: 103 TVQAGTTIAQTIDMDH--LYITANIKETDIKDIEEGNKVDIVVDGDADT 149 >gi|171741303|ref|ZP_02917110.1| hypothetical protein BIFDEN_00382 [Bifidobacterium dentium ATCC 27678] gi|283455337|ref|YP_003359901.1| hypothetical protein BDP_0400 [Bifidobacterium dentium Bd1] gi|171276917|gb|EDT44578.1| hypothetical protein BIFDEN_00382 [Bifidobacterium dentium ATCC 27678] gi|283101971|gb|ADB09077.1| Hypothetical protein BDP_0400 [Bifidobacterium dentium Bd1] Length = 213 Score = 40.5 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 64/210 (30%), Gaps = 41/210 (19%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINV-LISKGDLAVGMVVTPNILEWVAFPEEN 75 + G+ +R I +++ D+ + Sbjct: 40 VFLGLQCLRSTVETRPAVVTTQRIRRGDTITASVVAVRDIPY----------------DA 83 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD 135 ++ + ++ G++ ++ I G + S ++P+G A + Sbjct: 84 AWNNAFHTID------DVTGMVAQIDIPDGGIVTATM------ARASPMIPQGHTAVDVR 131 Query: 136 ISISSAVGGMIKPNDHVD----VVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV 191 ++ S + D V V + + + S VI + Sbjct: 132 LASSI---DELDVGDEVTLSGAVPAQGDAGDDGGALRELASRATVIG-----KPAKDANG 183 Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLR 221 +TAT ++P +A A++ Q A + V R Sbjct: 184 MATATFAMSPDEAAAVLQVQEYAAIIAVTR 213 >gi|224370759|ref|YP_002604923.1| FlgA [Desulfobacterium autotrophicum HRM2] gi|223693476|gb|ACN16759.1| FlgA [Desulfobacterium autotrophicum HRM2] Length = 310 Score = 40.5 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 16/113 (14%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+ + +L+ G ++ P L + D ++ + L G+ ++ + Sbjct: 186 RVVCATRNLSRGEILAPKDLCLKRINVSKIPDNYLTR------LDSLVGMRLKQSLASNG 239 Query: 107 PIRLEK-----LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 R L++RG+ + R ++ + D + V Sbjct: 240 FFRENMVEDSPLINRGDNVVLVARKGNMRIVATGVADQEG-----RLGDQIQV 287 >gi|153950687|ref|YP_001399630.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis IP 31758] gi|152962182|gb|ABS49643.1| flagella basal body P-ring formation protein FlgA [Yersinia pseudotuberculosis IP 31758] Length = 272 Score = 40.5 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 19/147 (12%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E V T P ++ + ++K L G V + +E V G+I D E+ Sbjct: 132 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDPD------EIL 185 Query: 95 GVLVRVPILKGDPIRLEKLVDR-----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 G+ ++ I + + +L L G A + I+ + G + Sbjct: 186 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKGEL--- 242 Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRV 176 + V++LS + V + RV Sbjct: 243 -----IKVKNLSSGRVVTATVDGSGRV 264 >gi|83594176|ref|YP_427928.1| flagellar basal body P-ring biosynthesis protein FlgA [Rhodospirillum rubrum ATCC 11170] gi|83577090|gb|ABC23641.1| Flageller protein FlgA [Rhodospirillum rubrum ATCC 11170] Length = 360 Score = 40.5 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 6/119 (5%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + + + + ++ P + ++ + + I D +L G+ RV + Sbjct: 222 ETREIPVLSRRVGRDEIIGPRDVSFLRERLDRLPPDAITDAA------DLVGMAPRVAVR 275 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G P+R +V +L+ R + +S D V V+ S Sbjct: 276 DGQPLRRADVVRPTLLKKGALVTMELRMPGIAVSAQGRALDSGAEGDTVRVINTASNQT 334 >gi|292489137|ref|YP_003532024.1| flagella basal body P-ring formation protein FlgA [Erwinia amylovora CFBP1430] gi|292900256|ref|YP_003539625.1| flagella basal body P-ring formation protein [Erwinia amylovora ATCC 49946] gi|291200104|emb|CBJ47230.1| flagella basal body P-ring formation protein [Erwinia amylovora ATCC 49946] gi|291554571|emb|CBA22188.1| Flagella basal body P-ring formation protein flgA precursor [Erwinia amylovora CFBP1430] gi|312173295|emb|CBX81550.1| Flagella basal body P-ring formation protein flgA precursor [Erwinia amylovora ATCC BAA-2158] Length = 234 Score = 40.1 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++K +L G V+ + +E A ++ G + D++ ++ G + G PI Sbjct: 111 WVAKKNLPAGSVIRADDIETHAGSLDHQPAGILFDIN------QIVGQTTTRALNAGSPI 164 Query: 109 RLEKL 113 +L Sbjct: 165 VQNQL 169 >gi|253998492|ref|YP_003050555.1| flagella basal body P-ring formation protein FlgA [Methylovorus sp. SIP3-4] gi|313200567|ref|YP_004039225.1| flagella basal body p-ring formation protein flga [Methylovorus sp. MP688] gi|253985171|gb|ACT50028.1| flagella basal body P-ring formation protein FlgA [Methylovorus sp. SIP3-4] gi|312439883|gb|ADQ83989.1| flagella basal body P-ring formation protein FlgA [Methylovorus sp. MP688] Length = 242 Score = 40.1 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 6/114 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 L++ LA G VV L + + + G D ++ G +V + + G Sbjct: 119 QYLVAAAPLAQGRVVDSGDLLFESGDLAQLPPGIFTDP------EQAIGRIVNISMNAGT 172 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 +R E L + R IS V V + Sbjct: 173 VLRQEMLKASPVVQQGQTVTLITRGKGFSISAEGHALNNATDGQLVRVKVANGQ 226 >gi|317124027|ref|YP_004098139.1| SAF domain protein [Intrasporangium calvum DSM 43043] gi|315588115|gb|ADU47412.1| SAF domain protein [Intrasporangium calvum DSM 43043] Length = 270 Score = 40.1 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 21/162 (12%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A +A V+ T+ + ++ +A G V++ + + P E+ Sbjct: 58 GAAGLAGSAVALGVSALRPAATDAGLPTV---VAVRAIAAGAVISASDVHVENRPVEHRP 114 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137 + D+ + PI + E+L GL + + A T+ + Sbjct: 115 ESAAADIAAVVGRR------AAAPIEARGMLTGERLA---GAGLLAGRSDDRAAMTVPVM 165 Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 + G ++ VD+ S + V++ +V+A+ Sbjct: 166 DIALTG--VEAGGRVDLYATGSGEQ-------VVAGAQVLAV 198 >gi|169825596|ref|YP_001695771.1| hypothetical protein Bsph_p184 [Lysinibacillus sphaericus C3-41] gi|168994873|gb|ACA42412.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 316 Score = 40.1 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 30/179 (16%) Query: 1 MKLTRL---MGIVVSGVFA---LVAGIIAMRLVSPHHVQTEEVITENPAKFIN------- 47 MK+ + + I S A L++G+ L + + EE+ K Sbjct: 1 MKIRFVTKKLIIAASLGAAAMLLISGVAFYFLYKSNVEKQEELRQNYKDKLAELEYTTEQ 60 Query: 48 ---VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 V D+ G ++ ++++ P+ V + DV + + Sbjct: 61 SELVYTLNTDVDKGQLIHKSMVQPSLVPKNAVPADAMTDVQFGASKY-----YAKANYKM 115 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 P+ + L K R+ + + I+ +++VDV + E Sbjct: 116 SQPVAESLF------YIGENLTKDIRSVEY---AAIELPSRIQKDEYVDVRIQFPTGED 165 >gi|83589608|ref|YP_429617.1| N-acetylneuraminate synthase [Moorella thermoacetica ATCC 39073] gi|83572522|gb|ABC19074.1| N-acetylneuraminate synthase [Moorella thermoacetica ATCC 39073] Length = 337 Score = 40.1 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 10/97 (10%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76 +VA + + + L++ D+A G ++T + L P + Sbjct: 251 VVAIRQVEKSLGDGIKRPAPGELAVMPAARRSLVAARDIAAGEIITDSCLTAKR-PGTGI 309 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 + G R I G + + + Sbjct: 310 PPNLW---------DVVVGRQARRDIAAGSILSWDMI 337 >gi|284989263|ref|YP_003407817.1| SAF domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284062508|gb|ADB73446.1| SAF domain protein [Geodermatophilus obscurus DSM 43160] Length = 229 Score = 40.1 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 56/180 (31%), Gaps = 13/180 (7%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 +++ ++ G +T L + V ++ G++ + Sbjct: 61 GATSSIIAVAREVPWGQQLTAADLVEARVSADPV-----LTPIPYAQRDQVIGMVAATTL 115 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + E L+++ L P G++ + +S ++P D V +V V Sbjct: 116 TPGSLLTREALIEQP------LPPAGQQLVGVGVSAVQLPTTPLRPGDDVLLVPVAGSGG 169 Query: 163 RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 + V + + L + + + A + +++V+ + Sbjct: 170 AQSPTAPVAPRTVPATVVRSGSPGTDGL--RVVDVLVDAADGPDVAARAAAGLVAIVVVA 227 >gi|118588712|ref|ZP_01546120.1| Flageller protein FlgA [Stappia aggregata IAM 12614] gi|118438698|gb|EAV45331.1| Flageller protein FlgA [Stappia aggregata IAM 12614] Length = 331 Score = 40.1 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 9/135 (6%) Query: 42 PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101 + ++VL+ + G +V L + V G + +V +++ G R Sbjct: 189 ATEMVDVLVLVQPVRRGDIVREEDLNIIREARTKVPAGALTEV------EDIVGKQARTT 242 Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 + P+ + + M ++ + D +DV+ +L Sbjct: 243 LRANAPLSRNDVQRPILIERGEKITVTYVMPGMKLTSRAQAMDSGAKGDVIDVM---NLQ 299 Query: 162 ERKPTVTVVLSNIRV 176 R+ + S +V Sbjct: 300 SRRIVPATITSRGQV 314 >gi|327454776|gb|EGF01431.1| SAF domain protein [Propionibacterium acnes HL087PA3] gi|328755832|gb|EGF69448.1| SAF domain protein [Propionibacterium acnes HL087PA1] Length = 166 Score = 40.1 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ + G V+ + L V + + +++G + I +G Sbjct: 9 EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 61 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + ++ S + GK + ++ SS V GM++ V VV Sbjct: 62 ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDGTPHVL 114 Query: 167 VT 168 Sbjct: 115 TR 116 >gi|313765398|gb|EFS36762.1| SAF domain protein [Propionibacterium acnes HL013PA1] gi|313772616|gb|EFS38582.1| SAF domain protein [Propionibacterium acnes HL074PA1] gi|313810837|gb|EFS48551.1| SAF domain protein [Propionibacterium acnes HL083PA1] gi|313814319|gb|EFS52033.1| SAF domain protein [Propionibacterium acnes HL025PA1] gi|313815198|gb|EFS52912.1| SAF domain protein [Propionibacterium acnes HL059PA1] gi|313817183|gb|EFS54897.1| SAF domain protein [Propionibacterium acnes HL046PA2] gi|313821753|gb|EFS59467.1| SAF domain protein [Propionibacterium acnes HL036PA1] gi|313824356|gb|EFS62070.1| SAF domain protein [Propionibacterium acnes HL036PA2] gi|313828503|gb|EFS66217.1| SAF domain protein [Propionibacterium acnes HL063PA2] gi|313831956|gb|EFS69670.1| SAF domain protein [Propionibacterium acnes HL007PA1] gi|313834503|gb|EFS72217.1| SAF domain protein [Propionibacterium acnes HL056PA1] gi|314915959|gb|EFS79790.1| SAF domain protein [Propionibacterium acnes HL005PA4] gi|314916988|gb|EFS80819.1| SAF domain protein [Propionibacterium acnes HL050PA1] gi|314921507|gb|EFS85338.1| SAF domain protein [Propionibacterium acnes HL050PA3] gi|314926860|gb|EFS90691.1| SAF domain protein [Propionibacterium acnes HL036PA3] gi|314931169|gb|EFS95000.1| SAF domain protein [Propionibacterium acnes HL067PA1] gi|314954773|gb|EFS99179.1| SAF domain protein [Propionibacterium acnes HL027PA1] gi|314958940|gb|EFT03042.1| SAF domain protein [Propionibacterium acnes HL002PA1] gi|314961235|gb|EFT05336.1| SAF domain protein [Propionibacterium acnes HL002PA2] gi|314974504|gb|EFT18599.1| SAF domain protein [Propionibacterium acnes HL053PA1] gi|314977303|gb|EFT21398.1| SAF domain protein [Propionibacterium acnes HL045PA1] gi|314985596|gb|EFT29688.1| SAF domain protein [Propionibacterium acnes HL005PA1] gi|314987554|gb|EFT31645.1| SAF domain protein [Propionibacterium acnes HL005PA2] gi|314988981|gb|EFT33072.1| SAF domain protein [Propionibacterium acnes HL005PA3] gi|315081893|gb|EFT53869.1| SAF domain protein [Propionibacterium acnes HL078PA1] gi|315082613|gb|EFT54589.1| SAF domain protein [Propionibacterium acnes HL027PA2] gi|315086324|gb|EFT58300.1| SAF domain protein [Propionibacterium acnes HL002PA3] gi|315097575|gb|EFT69551.1| SAF domain protein [Propionibacterium acnes HL038PA1] gi|315099792|gb|EFT71768.1| SAF domain protein [Propionibacterium acnes HL059PA2] gi|315101901|gb|EFT73877.1| SAF domain protein [Propionibacterium acnes HL046PA1] gi|315110380|gb|EFT82356.1| SAF domain protein [Propionibacterium acnes HL030PA2] gi|327331573|gb|EGE73312.1| SAF domain protein [Propionibacterium acnes HL096PA2] gi|327335082|gb|EGE76793.1| SAF domain protein [Propionibacterium acnes HL097PA1] gi|327447032|gb|EGE93686.1| SAF domain protein [Propionibacterium acnes HL043PA1] gi|327449932|gb|EGE96586.1| SAF domain protein [Propionibacterium acnes HL043PA2] gi|328756612|gb|EGF70228.1| SAF domain protein [Propionibacterium acnes HL025PA2] gi|328758662|gb|EGF72278.1| SAF domain protein [Propionibacterium acnes HL020PA1] gi|328761703|gb|EGF75218.1| SAF domain protein [Propionibacterium acnes HL099PA1] Length = 166 Score = 40.1 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 14/122 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ + G V+ + L V + + +++G + I +G Sbjct: 9 EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 61 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + ++ S + GK + ++ SS V GM++ V VV Sbjct: 62 ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDGTPHVL 114 Query: 167 VT 168 Sbjct: 115 TR 116 >gi|327537338|gb|EGF24071.1| LfgA (potential lateral flagellar protein FlgA) [Rhodopirellula baltica WH47] Length = 476 Score = 40.1 bits (92), Expect = 0.32, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 6/91 (6%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 Q E ++ V++++ L G V P + + P + + Sbjct: 314 ARSRTDQCEGIVRVTFTPKTAVVVARRPLQRGHRVGPGDVHFQPSPVNELS------GDR 367 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 + E+ G+ V I G P+R Sbjct: 368 VMDVDEVMGMEVVGLIRSGVPLRPSDFAAPR 398 >gi|328543155|ref|YP_004303264.1| flagellar protein FlgA [polymorphum gilvum SL003B-26A1] gi|326412901|gb|ADZ69964.1| flagellar protein FlgA [Polymorphum gilvum SL003B-26A1] Length = 322 Score = 40.1 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 6/90 (6%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 ++ ++ + ++V+ + G ++ P L + P + V + Sbjct: 165 IAGAARSQTLTLSGVAREMVDVIALLQPIGRGSILKPEDLTVIRLPRQRVPSRAVTSPD- 223 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 E+ G+ R + G P+ Sbjct: 224 -----EIVGLAARTTLRPGQPLSRTDFERP 248 >gi|318604248|emb|CBY25746.1| flagellar basal-body P-ring formation protein FlgA [Yersinia enterocolitica subsp. palearctica Y11] Length = 234 Score = 40.1 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 15/145 (10%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E +T P ++ V ++K L G +V P+ +E G+I D E+ Sbjct: 94 EVAVTVKPDIYLPVWVAKNTLERGKLVAPDDIELKKKNISTAQGGYITDPD------EIV 147 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI---SSAVGGMIKPNDH 151 G V+ I + +L L+ +G++ + + G +K Sbjct: 148 GFTVKRRIRNLQVVIPSQLEQP------VLVTRGQQVLMIAEQDGIEARMFGEALKNGRK 201 Query: 152 VDVVMVRSLSERKPTVTVVLSNIRV 176 +++ V+++S ++ +V +V Sbjct: 202 GELIKVKNISSKRTVTAMVDDVAKV 226 >gi|238755328|ref|ZP_04616671.1| Flagella basal body P-ring formation protein flgA [Yersinia ruckeri ATCC 29473] gi|238706464|gb|EEP98838.1| Flagella basal body P-ring formation protein flgA [Yersinia ruckeri ATCC 29473] gi|253317691|gb|ACT22780.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia ruckeri] Length = 219 Score = 40.1 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 6/87 (6%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 +S Q + L++ LA G +T + + + + G + D Sbjct: 76 LSVRCGQQRRFLQTQVQVSGKYLVATRQLAAGEKLTEKEMTYKEGRLDTLPPGALLDARF 135 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKL 113 G L I G P+ L Sbjct: 136 ------AKGTLALRHINAGQPLTRTML 156 >gi|315106591|gb|EFT78567.1| SAF domain protein [Propionibacterium acnes HL030PA1] Length = 166 Score = 40.1 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 56/175 (32%), Gaps = 21/175 (12%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ + G V+ + L V + + +++G + I +G Sbjct: 9 EVIVAAHAIEGGRVIQRSDLHTVRIDPGVLPHETAT-------LAQVEGRQASIRITEGT 61 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + ++ S + GK + ++ SS V GM++ V VV Sbjct: 62 ILTSSAVLSG------SAVGSGKALVGIHLADSSMV-GMLQVGQRVSVVSPSEDG----- 109 Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLV 219 VL+ +I ST + A A+ A L LV Sbjct: 110 TPHVLTRGAIIRSLPTSGGGLIQGSPSTELVVVSTGSTDAAAIAVAGQGQPLGLV 164 >gi|224825773|ref|ZP_03698877.1| flagella basal body P-ring formation protein FlgA [Lutiella nitroferrum 2002] gi|224601997|gb|EEG08176.1| flagella basal body P-ring formation protein FlgA [Lutiella nitroferrum 2002] Length = 240 Score = 40.1 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 14/131 (10%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ DL G V+ + +EW P + +G ++ E G+ R + +G P+ Sbjct: 120 LVATRDLDAGKVLGADDVEWAQRPVYELEEG-------LHSPAEAVGLSSRSALRRGQPL 172 Query: 109 RLEKL--VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 R + L V G + + K A + +A G ++ DV+ VR++ K Sbjct: 173 RRKLLEAVVLVRRGDAVEIVASKEAIVV-----TAPGESLESGRRNDVIRVRNVGSGKIL 227 Query: 167 VTVVLSNIRVI 177 V RV+ Sbjct: 228 RARVTEAGRVV 238 >gi|304438316|ref|ZP_07398257.1| flagella basal body P-ring formation protein FlgA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368682|gb|EFM22366.1| flagella basal body P-ring formation protein FlgA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 254 Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 8/101 (7%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 VL++ D+ + +TP + + + + D L G + I KG Sbjct: 131 VLVAMTDIRMDEAITPANAHVEESAVDTLPETTVTD------FDRLAGRVAGRYIRKGTV 184 Query: 108 IRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMI 146 I L G L T+ + G I Sbjct: 185 ITPTLLAMPRVLTAGSPVTLVAENGGITIRAEGVALEAGRI 225 >gi|170725949|ref|YP_001759975.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella woodyi ATCC 51908] gi|169811296|gb|ACA85880.1| flagella basal body P-ring formation protein FlgA [Shewanella woodyi ATCC 51908] Length = 235 Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 9/116 (7%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V++++ L G +++ + + N+ Q + ++++ G V+ I Sbjct: 114 PVVVARETLGPGDLLSNDDVIIEYVDRTNL------RGQQFDDIKQVVGTRVKRRIPPNQ 167 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 PI L G S+ + + + G + D + + S Sbjct: 168 PIFSSNLCFVCKGDTVSIYARSANVVIKTVGEALRDGNL---GDRIRIKNTHSNKS 220 >gi|32477361|ref|NP_870355.1| LfgA (potential lateral flagellar protein FlgA) [Rhodopirellula baltica SH 1] gi|32447912|emb|CAD77432.1| similar to LfgA (potential lateral flagellar protein similar to FlgA) [Rhodopirellula baltica SH 1] Length = 477 Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 6/91 (6%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 Q E ++ V++++ L G V P + + P + + Sbjct: 315 ARSRTDQCEGIVRVTFTPKTAVVVARRPLQRGHRVGPGDVHFQPSPVNELS------GDR 368 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 + E+ G+ V I G P+R Sbjct: 369 VMDVDEVMGMEVVGLIRSGVPLRPSDFAAPR 399 >gi|238799103|ref|ZP_04642559.1| Flagella basal body P-ring formation protein flgA [Yersinia mollaretii ATCC 43969] gi|238717050|gb|EEQ08910.1| Flagella basal body P-ring formation protein flgA [Yersinia mollaretii ATCC 43969] Length = 234 Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G +T +E + + G + + G + I G P+ Sbjct: 114 VASRQLAAGAKITAQDVEMKQGRLDTLPPGALLEPQFAQ------GSVSLRQINAGQPLT 167 Query: 110 LEKL 113 L Sbjct: 168 RNML 171 >gi|328906782|gb|EGG26553.1| SAF domain protein [Propionibacterium sp. P08] Length = 195 Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 25/213 (11%), Positives = 64/213 (30%), Gaps = 23/213 (10%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M + +V ++ +L+ + VL + D+ G V+ L Sbjct: 1 MFVAAGIAIVVVGALLIAQLIHAGQTEN------------RVLEVRSDVGRGEVIRDTDL 48 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 V + + + L G V + G + + G ++ Sbjct: 49 VAVTVGQVGNVSTV-----PADQLDALVGKRAAVDLRSGSLLSAGAI-----GAADTVPA 98 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186 GK + ++ G + + ++ +L+ +N + S Sbjct: 99 PGKSLVGLKLAPGQVPIGDLTAGAKLRLIQTSALNGSATATDAANTNGQSWD-ATMAAST 157 Query: 187 ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + + +E+ +A + S ++++V Sbjct: 158 KGTDQVTLVNVEVKSGEAARIAQLTSQGRIAVV 190 >gi|212213133|ref|YP_002304069.1| hypothetical protein CbuG_1641 [Coxiella burnetii CbuG_Q212] gi|212011543|gb|ACJ18924.1| hypothetical exported protein [Coxiella burnetii CbuG_Q212] Length = 394 Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 42/240 (17%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R ++ A+VA I+ + + + A +++L+S ++ Sbjct: 31 MKKSR-FLLIFLVALAIVAMILGLWRPLERRLHPTSNPKSSEAPQVSILVSGLEVP---- 85 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + D + + E G ++ + + G P+ V Sbjct: 86 ----------WALSFFPD-------RDLLVTERKGRVLLIDLQSGKPVIK---VIAKINE 125 Query: 121 LSSLLPKGKRAATMDISISSAVGGMI-----KPNDHVD-VVMVRSLSERKPTVTVVLSNI 174 ++S+ G + + + +V+ VV ++ + ++L NI Sbjct: 126 VASVAESGLSGIAVHPHFQQNHWIYLYYTYRRNGRYVNKVVRYELMNNQLTNPKIILDNI 185 Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS----VAKLSLVLRSIADLNPSS 230 + R+ G L +T A+ AAQ+ K+ LR D + + Sbjct: 186 ----LAARTHDGGRIKFGPDGYLYITTGDAQVAKAAQNPKSLAGKI---LRIKDDGSIPA 238 >gi|187478181|ref|YP_786205.1| flagellar basal body P-ring biosynthesis protein FlgA [Bordetella avium 197N] gi|115422767|emb|CAJ49295.1| flagella basal body P-ring formation protein [Bordetella avium 197N] Length = 249 Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 10/128 (7%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ + G +T L+ N+ G + D + G+ R I G PI Sbjct: 128 YVASRQIPAGQAITSEDLDSREGDLMNLPPGAMTDARS------IVGMQARHRINIGQPI 181 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168 R L D + + R +S P + V + Sbjct: 182 RGSALRDAASISRGQNVRIIARGNGFVVSSEGQALEDGAPGATIQV----RTQSGQVVSG 237 Query: 169 VVLSNIRV 176 V+ +V Sbjct: 238 VLQPGGQV 245 >gi|323706341|ref|ZP_08117906.1| N-acetylneuraminate synthase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534303|gb|EGB24089.1| N-acetylneuraminate synthase [Thermoanaerobacterium xylanolyticum LX-11] Length = 347 Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 10/65 (15%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +I+ D+ G ++T +L P + F L G R+ ILK I Sbjct: 292 IIAAKDIPSGSIITEEMLTTKR-PGTGLPPKFF---------DYLIGKKARIHILKDTII 341 Query: 109 RLEKL 113 L Sbjct: 342 DFSML 346 >gi|317406205|gb|EFV86454.1| flagella basal body P-ring formation protein [Achromobacter xylosoxidans C54] Length = 249 Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 6/106 (5%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ +A G +TP L + G I + Q + G+ I G P+ Sbjct: 128 YVASRMIAAGQALTPADLAPRDGDLVALPPGVITNP------QTVVGMTAAYRINAGQPV 181 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + L + + S + R +S P V V Sbjct: 182 KGAALRNAQSVVRGSNVRINARGKGFVVSSEGQALDNAAPGATVQV 227 >gi|126668330|ref|ZP_01739289.1| flagellar basal body P-ring biosynthesis protein [Marinobacter sp. ELB17] gi|126627247|gb|EAZ97885.1| flagellar basal body P-ring biosynthesis protein [Marinobacter sp. ELB17] Length = 263 Score = 39.7 bits (91), Expect = 0.44, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 L++ LA G + +++ G I + Q + G+ VR PI G Sbjct: 139 PALVASRPLARGERLRADMVSLQTVVVNASRRGTIAE------AQSIIGMEVRRPINSGS 192 Query: 107 PIRLEKLVDRGN 118 I + L Sbjct: 193 LITPDLLAAPDA 204 >gi|123442788|ref|YP_001006765.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089749|emb|CAL12602.1| flagella basal body P-ring formation protein FlgA [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 200 Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G +T +E + + G + + + G + PI G P+ Sbjct: 80 VAARQLAAGAKMTLQDIEMKQGRLDTLPPGALLEPNFAQ------GAVSLRPINAGQPLT 133 Query: 110 LEKL 113 L Sbjct: 134 RNML 137 >gi|163784419|ref|ZP_02179303.1| flagella basal body P-ring formation protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880310|gb|EDP73930.1| flagella basal body P-ring formation protein [Hydrogenivirga sp. 128-5-R1-1] Length = 317 Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 7/74 (9%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K +++K + G +++ + ++ +N D + +L G +R + Sbjct: 188 KTTKAVVAKRYIPKGSIISYDDVKIDKVKAKN-------DERYFTNINKLIGKKLRFAVK 240 Query: 104 KGDPIRLEKLVDRG 117 KG PI L+ L Sbjct: 241 KGQPITLKYLEKEY 254 >gi|167750751|ref|ZP_02422878.1| hypothetical protein EUBSIR_01729 [Eubacterium siraeum DSM 15702] gi|167656186|gb|EDS00316.1| hypothetical protein EUBSIR_01729 [Eubacterium siraeum DSM 15702] Length = 598 Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 63/194 (32%), Gaps = 25/194 (12%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV--VTPNILEWVAFPE 73 + + A + + + + E + + V I+K DL V I + P Sbjct: 97 GAILVVDATQGIEAQTLANTYLAIEQDLELVPV-INKIDLPSAHPDEVKEEIETVIGIPA 155 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLV-RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132 + + ++E+ +V VP KGDP K + + + Sbjct: 156 DEAP---LISAKMGINIKEVMEQVVKNVPAPKGDPNAPLKALIFDSYYDAYKG----VIV 208 Query: 133 TMDISISSAVGGMIKPNDHV---------DVVMVRSLSERKPTVTVVLSNIRVIAIDHNI 183 + I G +KP D + DVV V + + L V I +I Sbjct: 209 YVRIKD-----GTLKPGDRIRMMATGAEFDVVDVGYMGAKALENAKELRAGEVGYIAASI 263 Query: 184 DSDERVLVGSTATL 197 S VG T TL Sbjct: 264 KSIGDTKVGDTVTL 277 >gi|165918705|ref|ZP_02218791.1| glucose/sorbosone dehydrogenase [Coxiella burnetii RSA 334] gi|165917640|gb|EDR36244.1| glucose/sorbosone dehydrogenase [Coxiella burnetii RSA 334] Length = 369 Score = 39.7 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 82/240 (34%), Gaps = 42/240 (17%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R ++ A+VA I+ + + + A +++L+S G+ Sbjct: 6 MKKSR-FLLIFLVALAIVAMILGLWRPLERRLHPTSNPKSSEAPQVSILVS------GLE 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 VT + + D + + E G ++ + + G P+ V Sbjct: 59 VT--------WALSFLPD-------RDLLVTERKGRVLLIDLQSGKPVIK---VIAKINE 100 Query: 121 LSSLLPKGKRAATMDISISSAVGGMI-----KPNDHVDVVMVRS-LSERKPTVTVVLSNI 174 ++S+ G + + + +V+ V+ ++ + ++L NI Sbjct: 101 VASVAESGLSGIAVHPHFQQNHWIYLYYTYRRNGRYVNKVVRYELMNNQLTNPKIILDNI 160 Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS----VAKLSLVLRSIADLNPSS 230 + R+ G L +T A+ AAQ+ K+ LR D + + Sbjct: 161 ----LAARTHDGGRIKFGPDGYLYITTGDAQVAKAAQNPKSLAGKI---LRIKDDGSIPA 213 >gi|29830223|ref|NP_824857.1| hypothetical protein SAV_3680 [Streptomyces avermitilis MA-4680] gi|29607334|dbj|BAC71392.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 164 Score = 39.7 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 7/88 (7%) Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVG 192 + I+ ++ V +++P D +DVV + VV + RV + + G Sbjct: 80 PVRIADAATV-RLLRPGDRIDVVAA----DSGGETRVVATAARVTEVPDT--GEGMAESG 132 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVL 220 + L + A L A + ++L++ L Sbjct: 133 ALVVLSVPRATAARLAGASTTSRLAVTL 160 >gi|227495683|ref|ZP_03925999.1| hypothetical protein HMPREF0044_1537 [Actinomyces coleocanis DSM 15436] gi|226830915|gb|EEH63298.1| hypothetical protein HMPREF0044_1537 [Actinomyces coleocanis DSM 15436] Length = 159 Score = 39.7 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 49/161 (30%), Gaps = 18/161 (11%) Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + V G + + + G + G+P+ Sbjct: 14 ARHSKTVFVTLGFAVAGLLIWPLLFPSPSVVSGAGSTPVVSVGEPLPR------------ 61 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-KPTVTVVLSNIRVIAIDH 181 L + + A + + V + K + +D+ + + V +++ V++ Sbjct: 62 LELGRSRIALPVPV----GVANLFKSGNRIDIYVPGECKDSLNCPARRVAADVLVVS-AE 116 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 + ST L++T + ++L L +L + Sbjct: 117 PESAGWSGSTESTLVLDVTNIDIESLAGVSETTILRYILIN 157 >gi|330501133|ref|YP_004378002.1| SAF domain-containing protein [Pseudomonas mendocina NK-01] gi|328915419|gb|AEB56250.1| SAF domain-containing protein [Pseudomonas mendocina NK-01] Length = 234 Score = 39.7 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 6/70 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+ + + G ++ L+ GF N+ E+ G + + G Sbjct: 109 PVVHAARVIERGQTISAEQLQLQEVNIGKAPRGFY------NSFDEVVGQGAKRRVRAGQ 162 Query: 107 PIRLEKLVDR 116 I L Sbjct: 163 LIAPNLLTAP 172 >gi|256396011|ref|YP_003117575.1| SAF domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256362237|gb|ACU75734.1| SAF domain protein [Catenulispora acidiphila DSM 44928] Length = 222 Score = 39.7 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 20/200 (10%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++A ++ V V + VL+ + VG V++ + L+ V + G Sbjct: 38 VVAGSMLVLGAVVVGAVAFVKVGGRVPVLVVGAPVQVGQVISADDLKVVD-----IAPGT 92 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 + V + +++ G VP++ + + + + ++ P + Sbjct: 93 LAHVAFADEEKQVVGQPAAVPLVPDEVLTWQLIG-------AASYPPAGYGVATTQMKAG 145 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELT 200 A + V+VV S + V L+ + ++ ++ Sbjct: 146 AYPPHLVAGARVEVVAPASAAGAAAQVVASLAAVTEVSTPT-------DSGDVVVSVLAD 198 Query: 201 PMQAKALVAAQSVAKLSLVL 220 AKA+ +A + LSLVL Sbjct: 199 QNSAKAVSSA-TPGSLSLVL 217 >gi|87310232|ref|ZP_01092363.1| hypothetical protein DSM3645_27428 [Blastopirellula marina DSM 3645] gi|87286981|gb|EAQ78884.1| hypothetical protein DSM3645_27428 [Blastopirellula marina DSM 3645] Length = 599 Score = 39.7 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 22/141 (15%) Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 ++ G ++ E V P G R + + +K D VDV +V Sbjct: 52 AVTSVVLGQSMKNEAEVATRKADELKNRPIGMREFRAVVEVED--PSTLKAGDEVDVALV 109 Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVL-------------------VGSTATLE 198 + +L +RV +++ TL+ Sbjct: 110 TLGGDHGHV-EKILKKVRVQSVEVPRGEKPEPEKVVAAEEEAAAEHVAPELYPTRVVTLQ 168 Query: 199 LTPMQAKALVAAQSVAKLSLV 219 +T Q + A + L L Sbjct: 169 VTSGQLEKARVADAQGILRLS 189 >gi|291326358|ref|ZP_06124207.2| flagella basal body P-ring formation protein FlgA [Providencia rettgeri DSM 1131] gi|291314705|gb|EFE55158.1| flagella basal body P-ring formation protein FlgA [Providencia rettgeri DSM 1131] Length = 212 Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 7/72 (9%), Positives = 15/72 (20%), Gaps = 6/72 (8%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 ++ ++ G + + + G D L G + I Sbjct: 86 TGQYYVATRNINRGEPIQFVDIGTKKGLLHKLPAGASTDKI------ALRGAVALRNIPA 139 Query: 105 GDPIRLEKLVDR 116 G Sbjct: 140 GQTFTKSMTRQP 151 >gi|149177070|ref|ZP_01855678.1| hypothetical protein PM8797T_12051 [Planctomyces maris DSM 8797] gi|148844135|gb|EDL58490.1| hypothetical protein PM8797T_12051 [Planctomyces maris DSM 8797] Length = 795 Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 60/166 (36%), Gaps = 14/166 (8%) Query: 1 MK---LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 M+ + + + + + A+ G + +++ + + + + V Sbjct: 10 MRELFAAKGVLVAIISIIAVGIGCFIAMSSTYDNLEYSRQSYYRVCQMADFSVELKKVPV 69 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE-LDGVLVRVPILKGDPIRLEKLVDR 116 G + T + V + + +++ L G +V +P + PI ++V + Sbjct: 70 GDLATLTDVAGVT---SILPRIVFEVTASLEGVEKPLSGQVVSLPAHENAPI--NRIVIK 124 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 + + + I+ + A ++P DH+ +++ L E Sbjct: 125 QGSYFTDQRQEE-----VIINDAFARAHNLRPGDHIQLILNNRLQE 165 >gi|254785365|ref|YP_003072794.1| flagella basal body P-ring formation protein FlgA [Teredinibacter turnerae T7901] gi|237683904|gb|ACR11168.1| flagella basal body P-ring formation protein FlgA [Teredinibacter turnerae T7901] Length = 228 Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 37/99 (37%), Gaps = 6/99 (6%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + F V+I+ G + G +T + ++ G++ D + + G+ Sbjct: 94 VPVQVETFEEVVIAAGAIGRGAQITAGDVVTQRMNTSHLTGGYLRDPAR------VVGLE 147 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136 R + G+ I+L ++ + R++ + + Sbjct: 148 ARRMLRPGEIIKLNQVKAPDVVKKGQTVVLEARSSALRV 186 >gi|92114102|ref|YP_574030.1| flageller protein FlgA [Chromohalobacter salexigens DSM 3043] gi|91797192|gb|ABE59331.1| flagellar protein FlgA [Chromohalobacter salexigens DSM 3043] Length = 251 Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 6/95 (6%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 M V + Q + + + L++ + G ++ ++L W +D Sbjct: 104 VMVGVRCSNDQQVRYVQARVSASVRFLVAATAIQRGQRLSADMLGWERADVSRRPRNALD 163 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 D + G +V ++KG +R ++L Sbjct: 164 DPS------QAIGKVVMQRLVKGMALRGDRLRQPY 192 >gi|289704896|ref|ZP_06501313.1| hypothetical protein HMPREF0569_0663 [Micrococcus luteus SK58] gi|289558392|gb|EFD51666.1| hypothetical protein HMPREF0569_0663 [Micrococcus luteus SK58] Length = 747 Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 10/72 (13%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ L G +T + + + G QPN + L G + + +GD Sbjct: 405 LVAARPLQAGATITADDVTVKS-------PG---RGLQPNELPRLVGRTLHREMAEGDFF 454 Query: 109 RLEKLVDRGNGG 120 L D G Sbjct: 455 FAGDLTDTVPTG 466 >gi|332533181|ref|ZP_08409050.1| flagellar basal-body P-ring formation protein FlgA [Pseudoalteromonas haloplanktis ANT/505] gi|332037463|gb|EGI73917.1| flagellar basal-body P-ring formation protein FlgA [Pseudoalteromonas haloplanktis ANT/505] Length = 235 Score = 39.3 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 7/112 (6%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 + + + V+++ +L G V+T + L P + + L Sbjct: 102 AQYVHVRVVEMAPVVVATANLTRGEVITKSHLSIEMKPTH------FVRIQYLDDPTMLI 155 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMI 146 G + I G P+ L ++ G S + R + + + G + Sbjct: 156 GSRSKRNIRSGMPVLLNQICMVCKGD-SVNIYANLRGLRIKTTGIALEDGTL 206 >gi|290959701|ref|YP_003490883.1| hypothetical protein SCAB_53061 [Streptomyces scabiei 87.22] gi|260649227|emb|CBG72341.1| putative membrane protein [Streptomyces scabiei 87.22] Length = 148 Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 5/95 (5%) Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDS 185 P + A + I+ ++ V +++P D VDV+ + T +V RV + + Sbjct: 58 PAERVTAPVRIADAATV-RLLRPGDRVDVIAAEESATGAGTARIVARGARV----SKVPA 112 Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + G+ L + A L A + ++L++ L Sbjct: 113 ADAAESGALVVLTVPRRTAARLAGAGATSRLAVTL 147 >gi|307131613|ref|YP_003883629.1| flagellar basal-body P-ring formation protein flgA [Dickeya dadantii 3937] gi|306529142|gb|ADM99072.1| Flagellar basal-body P-ring formation protein flgA [Dickeya dadantii 3937] Length = 228 Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 6/90 (6%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 VS Q + N +++ + G +T + + + + + Sbjct: 85 VSVRCSQERRFVQVEVQVTGNYVVAAAPIGRGAELTSGDIRTIRGRIDQLPPRAL----- 139 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 +E G + I G + + Sbjct: 140 -FTPEEAQGAVALRDIAPGQALTQVMIRKP 168 >gi|330895616|gb|EGH27923.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 115 Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 25/123 (20%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAK--------------- 44 M M + V + AL+AG + + + P V + + P Sbjct: 1 MSSRATMVLAVLFLLGALIAGYLGIVVGRPTEVLVDTPPSAPPLTTEEITPPPTPPVEDA 60 Query: 45 -FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 NV++ D+ +T + L + G A+ ++ G + Sbjct: 61 LRHNVVVLARDIPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTLT 112 Query: 104 KGD 106 G Sbjct: 113 AGS 115 >gi|330465095|ref|YP_004402838.1| SAF domain-containing protein [Verrucosispora maris AB-18-032] gi|328808066|gb|AEB42238.1| SAF domain-containing protein [Verrucosispora maris AB-18-032] Length = 220 Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 77/219 (35%), Gaps = 27/219 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R + ++ + + G+ + V+ + L + VG VV Sbjct: 25 RRVRPGLLGLAVLLIALGGLGSAFAVTSVRA------------TGSYLAVARTVEVGSVV 72 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + L V V G D + ++ G+ V + G + + +L D+ Sbjct: 73 SASDLVSVQ-----VAGGQGLDPVPAGRLADVVGMRAAVSLAPGTLLTMAQLTDQP---- 123 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 LL G++ + + + ++P D V +V + + V + Sbjct: 124 --LLGPGQQQIALGLRTAQVPAPKLRPGDQVLLVSTPRDDSSSGSSSGVTRFTATVTDAV 181 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + D + V+ L L A+VA + ++++VL Sbjct: 182 STDGRDEVV----VYLALAVRDVPAVVAMAAQDRIAVVL 216 >gi|261420563|ref|YP_003254245.1| pseudaminic acid synthase [Geobacillus sp. Y412MC61] gi|319768232|ref|YP_004133733.1| pseudaminic acid synthase [Geobacillus sp. Y412MC52] gi|261377020|gb|ACX79763.1| pseudaminic acid synthase [Geobacillus sp. Y412MC61] gi|317113098|gb|ADU95590.1| pseudaminic acid synthase [Geobacillus sp. Y412MC52] Length = 351 Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 11/91 (12%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 A + + + + ++ I D+ G +T + + P + + Sbjct: 271 AWQSIGGIQYGPTKAEEASLKHRRSLYIV-RDMRAGETLTKENVRAIR-PGNGLPPKYF- 327 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 +L G V+ + KG P+ + L Sbjct: 328 --------DQLLGKTVKRDVKKGTPVTWDLL 350 >gi|119899031|ref|YP_934244.1| chaperon for flagellar basal body P-ring formation [Azoarcus sp. BH72] gi|119671444|emb|CAL95357.1| chaperon for flagellar basal body P-ring formation [Azoarcus sp. BH72] Length = 256 Score = 39.3 bits (90), Expect = 0.56, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 6/108 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 L++ L G ++ P L + D + DV + G R I +G Sbjct: 133 EYLVTAQPLRAGQIIGPADLVRRDGDLATLPDNTLTDVA------QASGQYTRFAIAQGS 186 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 P+R + L + + +S P D V V Sbjct: 187 PLRADMLRIPPAVRQGQTVQVVTVGSGFRVSSEGVALNNGAPGDPVRV 234 >gi|315099727|gb|EFT71703.1| SAF domain protein [Propionibacterium acnes HL059PA2] Length = 175 Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 19/177 (10%), Positives = 52/177 (29%), Gaps = 16/177 (9%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL+ + G +V + + + + + ++ G V + G Sbjct: 15 QVLVMTRAVGQGDIVRNADIGLTSVAVDRAVATI-----PASQLDKIVGRHALVDLSPGQ 69 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + + + + G+ + ++ + V V+ + Sbjct: 70 LLGSHSVGE-------LRVAPGRARIGLKLAAGRLPTVSLPAGARVTVIETSPDKDTGTV 122 Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 + ++ V+A + +E+ A L S+ +++LV R Sbjct: 123 SNLSTADAVVVAAPKATNDHGSW----LVDVEVDSGNAARLADLASLDRIALVERGQ 175 >gi|288921587|ref|ZP_06415859.1| SAF domain protein [Frankia sp. EUN1f] gi|288347005|gb|EFC81310.1| SAF domain protein [Frankia sp. EUN1f] Length = 230 Score = 39.3 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 10/163 (6%) Query: 20 GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79 G+ L+ T + ++ + G ++ L + Sbjct: 31 GVTVAALLVLAGAGTGAWAVTWSGDETDAVVLTRPVRRGELIETTDLAVARV---SAAGT 87 Query: 80 FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139 + V A + L G + + G + E S+L P G + ++ Sbjct: 88 AVRLVSPQVARRALVGRQALLDLPAGTLVTPEM-------AGSALPPAGSARVGLRLAPE 140 Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 + ++P D V VV+ +S V + V+ +D + Sbjct: 141 ALPSPQVQPGDWVQVVIPDEISGAPAVVADAVRVAAVLPVDDD 183 >gi|227494992|ref|ZP_03925308.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] gi|226831444|gb|EEH63827.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] Length = 211 Score = 39.3 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 73/223 (32%), Gaps = 43/223 (19%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 L+G+ + + + ++ + + D+ G ++T Sbjct: 23 PKFLIGVFLIIISISLTTLLINKARGGQ----------------EYYEATKDIPAGQIIT 66 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + L+ ++ + A Q + L I KG+ + LV + Sbjct: 67 LSDLKVISARVDG--------DAYLRAGQLTENTLTTRTINKGEMLPKAALVKENSQA-- 116 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---VTVVLSNIRVIAI 179 R ++++ + +K V++ +V + P + + V Sbjct: 117 ------YRQIVINVTPK--IPTSVKVGSKVELWVVPEENGNSPEPNKAQRLSEQVIVY-- 166 Query: 180 DHNIDSDERVLVGSTATLELTPMQAK---ALVAAQSVAKLSLV 219 + +S R+L +E++ +A+ L A + +L LV Sbjct: 167 -NLPESQNRILTERAQAVEISVPEAELPVILEHANNQHQLVLV 208 >gi|332162905|ref|YP_004299482.1| flagella basal body P-ring formation protein FlgA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667135|gb|ADZ43779.1| Flagella basal body P-ring formation protein FlgA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863355|emb|CBX73478.1| hypothetical protein YEW_ES20730 [Yersinia enterocolitica W22703] Length = 234 Score = 39.3 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 15/145 (10%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E +T P ++ V ++K L G +V P+ +E G+I D E+ Sbjct: 94 EVAVTVKPDIYLPVWVAKNTLERGKLVVPDDIELKKKNISTAQGGYITDPD------EIV 147 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI---SSAVGGMIKPNDH 151 G V+ I + +L L+ +G++ + + G +K Sbjct: 148 GFTVKRRIRNLQVVIPSQLEQP------VLVTRGQQVLMIAEQDGIEARMFGEALKNGRK 201 Query: 152 VDVVMVRSLSERKPTVTVVLSNIRV 176 +++ V+++S ++ +V +V Sbjct: 202 GELIKVKNISSKRTVTAMVDDVAKV 226 >gi|95929875|ref|ZP_01312616.1| Flageller protein FlgA [Desulfuromonas acetoxidans DSM 684] gi|95134171|gb|EAT15829.1| Flageller protein FlgA [Desulfuromonas acetoxidans DSM 684] Length = 243 Score = 39.3 bits (90), Expect = 0.61, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 36/107 (33%), Gaps = 12/107 (11%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 +V++++ L G +++ + V + + ++ + G LV + Sbjct: 118 KADVVVAQQSLKRGTIISAEDVSLVHLDVSRIRE-------PIFDLKNVVGKLVARNVRA 170 Query: 105 GDPIRLEKLVDRGNGGLSSLL-----PKGKRAATMDISISSAVGGMI 146 G P+ + + S + G + I++ G + Sbjct: 171 GQPVEFKSVETPPLVHKGSFVKLVARRSGMMLTAIGIALEDGSKGEV 217 >gi|283852033|ref|ZP_06369308.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio sp. FW1012B] gi|283572583|gb|EFC20568.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio sp. FW1012B] Length = 357 Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 10/77 (12%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILE-WVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 + L + DL G +TP+ LE PE+ + + L G + Sbjct: 289 QTMVVQRRALRAVRDLPAGHALTPDDLEALRPIPEDGLPPY---------ELDALLGKTL 339 Query: 99 RVPILKGDPIRLEKLVD 115 + +G+ + L Sbjct: 340 ARALGRGEHLTRRHLAR 356 >gi|83858807|ref|ZP_00952329.1| hypothetical protein OA2633_04871 [Oceanicaulis alexandrii HTCC2633] gi|83853630|gb|EAP91482.1| hypothetical protein OA2633_04871 [Oceanicaulis alexandrii HTCC2633] Length = 315 Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 6/95 (6%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 + ++P+ ++ + +V + +A G +T ++WV PE V Sbjct: 156 LFRAQIAPYPGGDPLTVSGRAQRVADVPVLNRTIARGDTITAADVDWVRLPENQV----- 210 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 A L G+ R + P+R + Sbjct: 211 -RGEIILAETGLVGMTARRALTADRPVRSYDVEPP 244 >gi|302552049|ref|ZP_07304391.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302469667|gb|EFL32760.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 162 Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 4/92 (4%) Query: 130 RAATMDISISSAVG-GMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDER 188 RA T + I+ A +++P D VDV+ VV RV + Sbjct: 73 RAVTAPVRIADAAAVRLLRPGDRVDVIAAEETVAGGD-ARVVARGARV--TKVPEPEEGV 129 Query: 189 VLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 G+ L + A L A + A+L++ L Sbjct: 130 ADGGALVVLSVPRATAARLAGASATARLAVTL 161 >gi|209559186|ref|YP_002285658.1| hypothetical protein Spy49_0642 [Streptococcus pyogenes NZ131] gi|209540387|gb|ACI60963.1| hypothetical protein Spy49_0642 [Streptococcus pyogenes NZ131] Length = 422 Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55 M+ + M VV+ + AL+ + L+ + + P +++ GD+ Sbjct: 38 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNELAAQKSAQPKVKTARVVANGDI 92 >gi|139474001|ref|YP_001128717.1| hypothetical protein SpyM51175 [Streptococcus pyogenes str. Manfredo] gi|134272248|emb|CAM30500.1| putative membrane protein [Streptococcus pyogenes str. Manfredo] Length = 397 Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55 M+ + M VV+ + AL+ + L+ + + P +++ GD+ Sbjct: 5 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNKLAAQKSAQPKVKTARVVANGDI 59 >gi|94990197|ref|YP_598297.1| capsule biosynthesis protein capA [Streptococcus pyogenes MGAS10270] gi|94543705|gb|ABF33753.1| Capsule biosynthesis protein capA [Streptococcus pyogenes MGAS10270] Length = 430 Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55 M+ + M VV+ + AL+ + L+ + + P +++ GD+ Sbjct: 38 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNELAAQKSAQPKVKTARVVANGDI 92 >gi|94992194|ref|YP_600293.1| capsule biosynthesis protein capA [Streptococcus pyogenes MGAS2096] gi|94545702|gb|ABF35749.1| Capsule biosynthesis protein capA [Streptococcus pyogenes MGAS2096] Length = 290 Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55 M+ + M VV+ + AL+ + L+ + + P +++ GD+ Sbjct: 38 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNKLAAQKSAQPKVKTARVVANGDI 92 >gi|71903278|ref|YP_280081.1| capsule biosynthesis protein [Streptococcus pyogenes MGAS6180] gi|94988318|ref|YP_596419.1| capsule biosynthesis protein [Streptococcus pyogenes MGAS9429] gi|71802373|gb|AAX71726.1| capsule biosynthesis protein [Streptococcus pyogenes MGAS6180] gi|94541826|gb|ABF31875.1| capsule biosynthesis protein [Streptococcus pyogenes MGAS9429] Length = 430 Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55 M+ + M VV+ + AL+ + L+ + + P +++ GD+ Sbjct: 38 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNKLAAQKSAQPKVKTARVVANGDI 92 >gi|15674859|ref|NP_269033.1| hypothetical protein SPy_0818 [Streptococcus pyogenes M1 GAS] gi|71910445|ref|YP_281995.1| capsule biosynthesis protein [Streptococcus pyogenes MGAS5005] gi|306827577|ref|ZP_07460858.1| CapA domain protein [Streptococcus pyogenes ATCC 10782] gi|13621994|gb|AAK33754.1| hypothetical protein SPy_0818 [Streptococcus pyogenes M1 GAS] gi|71853227|gb|AAZ51250.1| capsule biosynthesis protein [Streptococcus pyogenes MGAS5005] gi|304430229|gb|EFM33257.1| CapA domain protein [Streptococcus pyogenes ATCC 10782] Length = 430 Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55 M+ + M VV+ + AL+ + L+ + + P +++ GD+ Sbjct: 38 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNELAAQKSAQPKVKTARVVANGDI 92 >gi|21910087|ref|NP_664355.1| hypothetical protein SpyM3_0551 [Streptococcus pyogenes MGAS315] gi|21904278|gb|AAM79158.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] Length = 393 Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55 M+ + M VV+ + AL+ + L+ + + P +++ GD+ Sbjct: 1 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNKLAAQKSAQPKVKTARVVANGDI 55 >gi|28896215|ref|NP_802565.1| hypothetical protein SPs1303 [Streptococcus pyogenes SSI-1] gi|28811466|dbj|BAC64398.1| hypothetical protein [Streptococcus pyogenes SSI-1] Length = 430 Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55 M+ + M VV+ + AL+ + L+ + + P +++ GD+ Sbjct: 38 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNKLAAQKSAQPKVKTARVVANGDI 92 >gi|257069197|ref|YP_003155452.1| SAF domain-containing protein [Brachybacterium faecium DSM 4810] gi|256560015|gb|ACU85862.1| SAF domain-containing protein [Brachybacterium faecium DSM 4810] Length = 213 Score = 38.9 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 63/202 (31%), Gaps = 33/202 (16%) Query: 1 MKLTRLMG----IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLA 56 M+L R ++V V + + ++ LVS + VL+ K + Sbjct: 8 MRLRRPRWKDPRLIVGIVLVVASVLMGAVLVSRLS------------ETTTVLVVKSAIV 55 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G + L V + D ++ D+ +G + I G+ + L + Sbjct: 56 PGDALDDAELTTVELRLGDQTDHYVGDLGAIP-----EGAVATRAIQSGELLPLSAVGQA 110 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT--VVLSNI 174 + L R + + +AV + P V++ + +++ + Sbjct: 111 SDVPL--------RPVVIPV--EAAVAESVVPGATVELWHTAPAGDDGQNAQAGMLVPDA 160 Query: 175 RVIAIDHNIDSDERVLVGSTAT 196 V +D R + Sbjct: 161 VVRRVDEGSSLGMRSMSVEVLV 182 >gi|197120087|ref|YP_002140514.1| N-acetylneuraminic acid synthase-like protein [Geobacter bemidjiensis Bem] gi|197089447|gb|ACH40718.1| N-acetylneuraminic acid synthase-related protein [Geobacter bemidjiensis Bem] Length = 338 Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 10/89 (11%) Query: 25 RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84 ++ +++ L G +T + P + F Sbjct: 259 AMMGSGVKMPAASEKTTRINNRKSIVAARALPAGHRLTAEDIAVKR-PGFGIPPRF---- 313 Query: 85 HQPNAMQELDGVLVRVPILKGDPIRLEKL 113 +EL G ++ P+ + + I KL Sbjct: 314 -----REELPGSVLNEPVEQDEVIPWSKL 337 >gi|2494515|sp|Q56892|FLGA_YEREN RecName: Full=Flagella basal body P-ring formation protein flgA; Flags: Precursor gi|793897|emb|CAA88191.1| flgA [Yersinia enterocolitica] Length = 224 Score = 38.9 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G +T ++ + + G + + + G + I G P+ Sbjct: 104 VAARQLAAGEKMTLQDIKMKQGRLDTLPPGALLEPNFAQ------GAVSLRQINAGQPLT 157 Query: 110 LEKL 113 L Sbjct: 158 RNML 161 >gi|288919641|ref|ZP_06413969.1| SAF domain protein [Frankia sp. EUN1f] gi|288348930|gb|EFC83179.1| SAF domain protein [Frankia sp. EUN1f] Length = 274 Score = 38.9 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 13/112 (11%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++ DL VG +V L V+ ++ + + EL G + P+ +G+ + Sbjct: 64 VVAAADLPVGHLVVEGDLRTVSAQLDHATSD---RYYPGDRRSELVGATLARPVSRGELL 120 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 R + + + P DHVDV + + Sbjct: 121 SGADFAGASATA--------TRLVPVIVKA--GRLPALTPGDHVDVFVYQPD 162 >gi|327398887|ref|YP_004339756.1| flagella basal body P-ring formation protein FlgA [Hippea maritima DSM 10411] gi|327181516|gb|AEA33697.1| flagella basal body P-ring formation protein FlgA [Hippea maritima DSM 10411] Length = 295 Score = 38.9 bits (89), Expect = 0.71, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 8/79 (10%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + + + +K + ++ D+ G ++TP+ + + + V ++ + Sbjct: 160 KKISITAKCSSKGTLIPVAAKDIESGSIITPDDITFKT--SDRVLSTYLTN------KPS 211 Query: 93 LDGVLVRVPILKGDPIRLE 111 + + I KG P L Sbjct: 212 IINRVAISFIKKGSPFTLS 230 >gi|222053733|ref|YP_002536095.1| flagella basal body P-ring formation protein FlgA [Geobacter sp. FRC-32] gi|221563022|gb|ACM18994.1| flagella basal body P-ring formation protein FlgA [Geobacter sp. FRC-32] Length = 226 Score = 38.9 bits (89), Expect = 0.71, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 12/142 (8%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 + +A+ + V+ + ++++ L G V+ + Sbjct: 71 GWGSANLALIVRVDGRVERNVPVKVEVEAMAEMVVAVRPLERGEVIDAADVAVQKRGLSR 130 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE---KLVDRGNGGLSSLLPKGKRAA 132 + F+ DV E+ G VR I +PIR + ++ +G L +++ + + Sbjct: 131 LQGRFVRDVD------EVVGKRVRTAIRGNNPIRPDFLERVPLIKSGQLVTIVAENE--- 181 Query: 133 TMDISISSAVGGMIKPNDHVDV 154 ++ I+ + D V V Sbjct: 182 SLRITAAGKARNSGAEGDTVMV 203 >gi|318605238|emb|CBY26736.1| flagellar basal-body P-ring formation protein FlgA [Yersinia enterocolitica subsp. palearctica Y11] Length = 226 Score = 38.9 bits (89), Expect = 0.72, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G +T ++ + + G + + + G + I G P+ Sbjct: 106 VAARQLAAGEKMTLQDIKMKQGRLDTLPPGALLEPNFAQ------GAVSLRQINAGQPLT 159 Query: 110 LEKL 113 L Sbjct: 160 RNML 163 >gi|332305609|ref|YP_004433460.1| flagella basal body P-ring formation protein FlgA [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172938|gb|AEE22192.1| flagella basal body P-ring formation protein FlgA [Glaciecola agarilytica 4H-3-7+YE-5] Length = 236 Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 41/119 (34%), Gaps = 9/119 (7%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + V++ ++ G ++ + ++ V + + + ++ G ++ + Sbjct: 112 QMQPVVVISNAVSPGTILNQSNIKLVDMNR------ALLRRTTFSTLDDVLGARIKRRVR 165 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G PI L G + ++ + + + G I D + V RS + Sbjct: 166 PGQPITPNNLCFVCKGD-TIVINASNPMMQVKATGVAMQDGNI--GDTISVTNSRSKKQ 221 >gi|66045280|ref|YP_235121.1| YD repeat-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63255987|gb|AAY37083.1| YD repeat [Pseudomonas syringae pv. syringae B728a] Length = 1682 Score = 38.9 bits (89), Expect = 0.73, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 16/181 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGI--IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58 M + + + V VF V +A ++ V+ ++ G LA G Sbjct: 1448 MGIQTWIMLAVGIVFTAVGAYATVASFGLAAPGSVPVTVLGMTMTAQTAAYVATGLLAAG 1507 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIRLEKLVD 115 V+ + + ++ G + R + K K Sbjct: 1508 TVLGAASTAATTYGAVKGNETAFRLGEYLAYAAIPLDIAGGVFRSAV-KSAIKAASKASS 1566 Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 R +S + G T+D S +V G + S+ P V + +R Sbjct: 1567 RRVSETASRVSVG----TIDDSPVDSVTGT-RRGS-----APASMDAPGPVGGVRIPRVR 1616 Query: 176 V 176 V Sbjct: 1617 V 1617 >gi|303241174|ref|ZP_07327682.1| hypothetical protein AceceDRAFT_3030 [Acetivibrio cellulolyticus CD2] gi|302591301|gb|EFL61041.1| hypothetical protein AceceDRAFT_3030 [Acetivibrio cellulolyticus CD2] Length = 350 Score = 38.9 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 29/183 (15%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV-------ITENPAKFINVLISKG 53 M + V+ V ++ ++ + Q +E + V + Sbjct: 15 MIIITGTVFVLFVVSGVLGIFQYFKMKGNYQKQVDEYSIKVKSYEKQIEQSLRTVYVPIE 74 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 DL + ++ + + D ++D G L++ + P+ L Sbjct: 75 DLKYNTKLEESMFDTIEILSSLPKDQYMDKEDF--------GKLLKTDLKAQTPLMKYML 126 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173 + + R A + + I ND VDV + E +VLS Sbjct: 127 Q-------ADKVDDDLRDAEF---NTLTLQTNIAKNDFVDVRIRFPNGED----YIVLSK 172 Query: 174 IRV 176 +V Sbjct: 173 KKV 175 >gi|288818840|ref|YP_003433188.1| sialic acid synthase [Hydrogenobacter thermophilus TK-6] gi|288788240|dbj|BAI69987.1| sialic acid synthase [Hydrogenobacter thermophilus TK-6] gi|308752427|gb|ADO45910.1| pseudaminic acid synthase [Hydrogenobacter thermophilus TK-6] Length = 349 Score = 38.9 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 10/76 (13%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 E KF L + D+ G V+ ++ V G+ P ++++ G Sbjct: 283 RQEEMRKFARSLFAVKDIKAGEVINEENIKSVR-------PGY---GLHPKHLKDVLGKR 332 Query: 98 VRVPILKGDPIRLEKL 113 RV I KG P++ E L Sbjct: 333 ARVDIPKGTPLKWEFL 348 >gi|157147106|ref|YP_001454425.1| flagellar basal body P-ring biosynthesis protein FlgA [Citrobacter koseri ATCC BAA-895] gi|157084311|gb|ABV13989.1| hypothetical protein CKO_02883 [Citrobacter koseri ATCC BAA-895] Length = 263 Score = 38.9 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 15/143 (10%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 +T P ++ V+I+K L G V++ + + + ++ D E G+ Sbjct: 125 AVTVKPDVYLPVVIAKNSLERGQVLSASDVSIKKLNISSTRGNYLTDPD------EAIGL 178 Query: 97 LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS---ISSAVGGMIKPNDHVD 153 V+ I + PI L +L L+ +G+R + + +G +K + Sbjct: 179 TVKRRIRELQPITLTQLESP------VLVERGQRVLMIAEQGGVEARTMGEAMKKGRKGE 232 Query: 154 VVMVRSLSERKPTVTVVLSNIRV 176 ++ V++ S + +V V Sbjct: 233 MIKVKNESSERVVSAIVADAGVV 255 >gi|109899408|ref|YP_662663.1| flagellar basal body P-ring biosynthesis protein FlgA [Pseudoalteromonas atlantica T6c] gi|109701689|gb|ABG41609.1| flagella basal body P ring formation protein FlgA [Pseudoalteromonas atlantica T6c] Length = 236 Score = 38.9 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 41/119 (34%), Gaps = 9/119 (7%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + V++ ++ G ++ + +E + + + + ++ G ++ + Sbjct: 112 QMQPVVVISNAVSPGTILNQSNIELINMNR------ALLRRTTFSNVDDVMGARIKRRVR 165 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G PI L G + ++ + + + G I D + V RS + Sbjct: 166 PGQPITPNNLCFVCKGD-TIIINASNSMMQVKATGVAMQDGNI--GDTISVTNSRSKKQ 221 >gi|332161318|ref|YP_004297895.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665548|gb|ADZ42192.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 226 Score = 38.9 bits (89), Expect = 0.78, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G +T ++ + + G + + + G + I G P+ Sbjct: 106 VAARQLAAGEKMTLQDIKMKQGRLDTLPPGALLEPNFAQ------GAVSLRQINAGQPLT 159 Query: 110 LEKL 113 L Sbjct: 160 RNML 163 >gi|256397696|ref|YP_003119260.1| SAF domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256363922|gb|ACU77419.1| SAF domain protein [Catenulispora acidiphila DSM 44928] Length = 197 Score = 38.9 bits (89), Expect = 0.80, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 20/167 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL +A G VVT + ++ V + + E+ G + VP+ G Sbjct: 32 PVLAVAQPIAAGQVVTQDDVKIVKVGAAS-----DLGLVPSINEAEVVGHVAAVPLAAGT 86 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---LSER 163 + + G + P G+ + + + A + D V+V ++ Sbjct: 87 LLTAHMV------GTADFPPPGQAVIGVALK-AGAFPPRLGVGDRVNVWPGPDVAAVASA 139 Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210 + SN V ++ + + TL + A + A Sbjct: 140 SSAPVALASNAVVTSVGSA-----DSVGTTVVTLLVDAQAAPKVTQA 181 >gi|294678479|ref|YP_003579094.1| sialic acid synthase [Rhodobacter capsulatus SB 1003] gi|294477299|gb|ADE86687.1| sialic acid synthase [Rhodobacter capsulatus SB 1003] Length = 342 Score = 38.6 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 10/90 (11%) Query: 26 LVSPHHVQTEEVITENPAKFINV-LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84 ++ + + E +F +++ DL G ++T + W P G+ Sbjct: 262 WIASRNPKERTAAEEPVYRFARASVVADRDLPAGHLITEADI-WARRPGSGEIAGY---- 316 Query: 85 HQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 ++ G + + ++ L Sbjct: 317 ----DFDKVVGKRTTRALPRNTQLKWSDLA 342 >gi|257387509|ref|YP_003177282.1| N-acylneuraminate-9-phosphate synthase [Halomicrobium mukohataei DSM 12286] gi|257169816|gb|ACV47575.1| N-acylneuraminate-9-phosphate synthase [Halomicrobium mukohataei DSM 12286] Length = 354 Score = 38.6 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 10/98 (10%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 A+ +A R Q N + L + DL+ G V++ N + + Sbjct: 257 AVTLSRLAARARGNAEKQPTAGERRNKSTTRKSLHAAVDLSAGEVLSSNDINILR----- 311 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 D P + G ++ + GDPI + Sbjct: 312 -----PTDGLSPKHYDTVIGAVLETDLGAGDPITTANV 344 >gi|108807169|ref|YP_651085.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Antiqua] gi|108812487|ref|YP_648254.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Nepal516] gi|145598614|ref|YP_001162690.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Pestoides F] gi|108776135|gb|ABG18654.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Nepal516] gi|108779082|gb|ABG13140.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Antiqua] gi|145210310|gb|ABP39717.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Pestoides F] Length = 251 Score = 38.6 bits (88), Expect = 0.89, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G ++ ++ + + G + D H G + + I G P+ Sbjct: 131 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFAQ------GAVSQRQINAGQPLT 184 Query: 110 LEKL 113 L Sbjct: 185 RNML 188 >gi|22126394|ref|NP_669817.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis KIM 10] gi|45441413|ref|NP_992952.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis biovar Microtus str. 91001] gi|162419453|ref|YP_001606469.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Angola] gi|165926043|ref|ZP_02221875.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. F1991016] gi|165938691|ref|ZP_02227246.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. IP275] gi|166010841|ref|ZP_02231739.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. E1979001] gi|166210809|ref|ZP_02236844.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401018|ref|ZP_02306521.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420243|ref|ZP_02311996.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425844|ref|ZP_02317597.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469716|ref|ZP_02334420.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis FV-1] gi|270486649|ref|ZP_06203723.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis KIM D27] gi|294504034|ref|YP_003568096.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis Z176003] gi|21959381|gb|AAM86068.1|AE013854_4 putative flagella basal body P-ring formation protein [Yersinia pestis KIM 10] gi|45436274|gb|AAS61829.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Microtus str. 91001] gi|162352268|gb|ABX86216.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Angola] gi|165913305|gb|EDR31927.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. IP275] gi|165922247|gb|EDR39424.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. F1991016] gi|165990185|gb|EDR42486.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. E1979001] gi|166207989|gb|EDR52469.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. B42003004] gi|166961938|gb|EDR57959.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049407|gb|EDR60815.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055243|gb|EDR65040.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262361780|gb|ACY58501.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis D106004] gi|262366084|gb|ACY62641.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis D182038] gi|270335153|gb|EFA45930.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis KIM D27] gi|294354493|gb|ADE64834.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis Z176003] Length = 254 Score = 38.6 bits (88), Expect = 0.90, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G ++ ++ + + G + D H G + + I G P+ Sbjct: 134 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFAQ------GAVSQRQINAGQPLT 187 Query: 110 LEKL 113 L Sbjct: 188 RNML 191 >gi|330877761|gb|EGH11910.1| bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 663 Score = 38.6 bits (88), Expect = 0.92, Method: Composition-based stats. Identities = 22/203 (10%), Positives = 59/203 (29%), Gaps = 15/203 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRL-VSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M ++ + ++ ++ ++ + + L ++ D+ V Sbjct: 1 MSPKAVVFAYHDIGCVGLQALLDAGYDIAAVFTHADDPAEKTFFGSVAQLCARHDIPVHA 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 PN WV + D ++L G + G L+ R G Sbjct: 61 PEDPNHPLWVERIGKLAPDFIFS-----FYYRQLLGEPLLAYAKNGALNLHGSLLPRYRG 115 Query: 120 GLSS----LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVV 170 + + + + T+ + A G I V + + R+ +++ Sbjct: 116 RAPANWVLVNGESETGVTLHQMVKRADAGPIVAQQRVSISATDTALTLHGKLREAASSLL 175 Query: 171 LSNIRVIAIDHNIDSDERVLVGS 193 + ++A + + + Sbjct: 176 CETLPLLAQGQLSGTPQDESKAT 198 >gi|315127359|ref|YP_004069362.1| flagellar biosynthesis; assembly of basal-body periplasmic P-ring [Pseudoalteromonas sp. SM9913] gi|315015873|gb|ADT69211.1| flagellar biosynthesis; assembly of basal-body periplasmic P-ring [Pseudoalteromonas sp. SM9913] Length = 213 Score = 38.6 bits (88), Expect = 0.93, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 8/112 (7%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 + + + V+++ +LA G V+TP+ L P + +++D L Sbjct: 80 AQYVHVRITESAPVVVATTNLARGEVITPSHLSIDMRPAHFIRAQYLEDP------TALI 133 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP--KGKRAATMDISISSAVGG 144 G + I +G P+ L ++ G ++ KG R T I++ G Sbjct: 134 GSRSKRNIREGMPVLLNQICMVCKGDSVTIYANIKGLRVKTTGIALEDGTLG 185 >gi|330965148|gb|EGH65408.1| bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 663 Score = 38.6 bits (88), Expect = 0.95, Method: Composition-based stats. Identities = 22/203 (10%), Positives = 59/203 (29%), Gaps = 15/203 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRL-VSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M ++ + ++ ++ ++ + + L ++ D+ V Sbjct: 1 MSPKAVVFAYHDIGCVGLQALLDAGYDIAAVFTHADDPAEKTFFGSVAQLCARHDIPVHA 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 PN WV + D ++L G + KG L+ G Sbjct: 61 PEDPNHPLWVERIGKLTPDFIFS-----FYYRQLLGEPLLTCAKKGALNLHGSLLPHYRG 115 Query: 120 GLSS----LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVV 170 + + + + T+ + A G I V + + R+ +++ Sbjct: 116 RAPANWVLVNGESETGVTLHQMVKRADAGPIVAQQRVSISATDTALTLHGKLREAASSLL 175 Query: 171 LSNIRVIAIDHNIDSDERVLVGS 193 + ++A + + + Sbjct: 176 CETLPLLAQGQLSGTPQDESKAT 198 >gi|291336858|gb|ADD96390.1| predicted flagellar basal body P ring biosynthesis protein [uncultured organism MedDCM-OCT-S09-C206] Length = 239 Score = 38.6 bits (88), Expect = 0.98, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 56/152 (36%), Gaps = 14/152 (9%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 + + + ++V + +++ G V++ L + A PE + + Sbjct: 94 SANLSAKIVSSESIPTDNRLSVAVLIKNISKGQVISEEYLGFEARPERQIHGAY------ 147 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKL--VDRGNGGLSSLLPKGKRAATMDISISSAVGG 144 N + + G + I G ++ L V + S L+ +A T+ S + G Sbjct: 148 -NHISGVLGRKAKNNIAAGTILKARHLDTVYSVDKNDSVLVIAANKAITITTSAIALENG 206 Query: 145 MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 + D++ V+++ K ++ +V Sbjct: 207 QVG-----DMIAVKNVKSEKTFKVIITGKKKV 233 >gi|194754543|ref|XP_001959554.1| GF12932 [Drosophila ananassae] gi|190620852|gb|EDV36376.1| GF12932 [Drosophila ananassae] Length = 287 Score = 38.6 bits (88), Expect = 0.99, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 5/132 (3%) Query: 26 LVSPHHVQTEEVITENPAKFINVLIS--KGDLAVG--MVVTPNILEWVAFPEENVFDGFI 81 V + E + + ++ +++ V+T + WV V + Sbjct: 32 YVGRAYHNGEMLPAKVVPNKQQAYVAWGGQEISKHDFEVLTGDHFSWVPASGGEVPPFAL 91 Query: 82 DDVHQPNAMQELDGV-LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 + G + + G + + GG L + ++ +SS Sbjct: 92 RVGQTADGEALFVGRGYFQGSLTPGKVHPSHQCLYIPYGGEEHRLEAYEVLVQPEVWVSS 151 Query: 141 AVGGMIKPNDHV 152 + G I P V Sbjct: 152 SSGRGIVPGTVV 163 >gi|116620574|ref|YP_822730.1| Altronate dehydratase [Candidatus Solibacter usitatus Ellin6076] gi|116223736|gb|ABJ82445.1| Altronate dehydratase [Candidatus Solibacter usitatus Ellin6076] Length = 511 Score = 38.6 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 38/133 (28%), Gaps = 10/133 (7%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF----- 80 LV V E + NV +++ L G + + L + + G Sbjct: 2 LVEITKVPNAENSVIHLHPTDNVAVARVPLPAGTELRVDGLPVTV--RDAIPAGHKIALW 59 Query: 81 -IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139 I ++ G ++PI G I L L P + A + Sbjct: 60 DIAPGETVERYGQVIGR-AKLPIDAGRHIHTHNLAYEELA-LDYEFPTTETAVPTPRPDA 117 Query: 140 SAVGGMIKPNDHV 152 G + + V Sbjct: 118 PTFLGYPREDGRV 130 >gi|311694437|gb|ADP97310.1| flagella basal body P-ring formation protein FlgA [marine bacterium HP15] Length = 222 Score = 38.6 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 L++ L G +T +L + + G I D ++ G+ VR + G Sbjct: 98 PALVAARPLTRGERITEGLLAKQSVEINSSRRGVITDS------KQAIGMEVRRAVNAGS 151 Query: 107 PIRLEKLVDRGN 118 + + L Sbjct: 152 LVTPDMLSAPNA 163 >gi|186895110|ref|YP_001872222.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis PB1/+] gi|186698136|gb|ACC88765.1| flagella basal body P-ring formation protein FlgA [Yersinia pseudotuberculosis PB1/+] Length = 259 Score = 38.2 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G ++ ++ + + G + D H G + + I G P+ Sbjct: 139 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFAQ------GAVSQRQINAGQPLT 192 Query: 110 LEKL 113 L Sbjct: 193 RNML 196 >gi|24215366|ref|NP_712847.1| endoflagellar basal body P-ring biosynthesis protein [Leptospira interrogans serovar Lai str. 56601] gi|45657205|ref|YP_001291.1| flagella basal body P-ring formation protein precursor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196477|gb|AAN49865.1| endoflagellar basal body P-ring biosynthesis protein [Leptospira interrogans serovar Lai str. 56601] gi|45600443|gb|AAS69928.1| flagella basal body P-ring formation protein precursor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 296 Score = 38.2 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 14/138 (10%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + + VL +K L G+ +T + F + + EL G + Sbjct: 169 QVEQMVTVLKAKRSLNQGIKITNEDFQEEEI--------FTSEEILDSPGNELLGSTLLK 220 Query: 101 PILKGDPIRLEKL--VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 + +G+ R + + + G L+ K + + + + G I + V V Sbjct: 221 NMNEGEIFRKKHVRKIQDVQRGGEILMIYHKGSLVLKTKVKALSSGNI--GEEVQV--TT 276 Query: 159 SLSERKPTVTVVLSNIRV 176 E + VV N V Sbjct: 277 HSRENQMKAKVVDKNTVV 294 >gi|259502399|ref|ZP_05745301.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259169661|gb|EEW54156.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 190 Score = 38.2 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 8/151 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + + I ++ V + I++ L + ++ P + S+ A G Sbjct: 1 MNRNKKLVIGLAVVALGLGVILSFMLGQQSNAHQSAAVSSQPVRESRSARSQQSTAPGQQ 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG---DPIRLEKLVDRG 117 + + F +E+ + + + LV + L G + L D Sbjct: 61 SSSSQPATAQFSDEDYQLMAFLKLVDEDGSGAAEKQLVSLDKLHGGDDEITMWNDLGDGH 120 Query: 118 NGGL-----SSLLPKGKRAATMDISISSAVG 143 + G + + + T D S +G Sbjct: 121 SIGFGAHTTAMRVKGDQVEVTFDDETPSGMG 151 >gi|318040475|ref|ZP_07972431.1| membrane-associated Zn-dependent protease [Synechococcus sp. CB0101] Length = 362 Score = 38.2 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 65/208 (31%), Gaps = 19/208 (9%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN-----------PAKFINVLISKGDLAV 57 + V A++AG+I + T + I + + V + + + Sbjct: 1 MGVLTALAILAGLIVVHEAGHFFAATWQGIRVSGFSVGFGPVLLERQRRGVQFALRAIPL 60 Query: 58 GMVVT-PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G V+ P+ E P ++ + + P + ++ +L + + LV Sbjct: 61 GGFVSFPDDDEESTIPADD--PDLLRNRPIPQRALVIAAGVLANLLLAWSVLVAQGLVVG 118 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 G S+ S +A ++P D ++ ++ V RV Sbjct: 119 IPAGFSATPG---VLVAGVQSGQAAAASGLRPGDR--ILSADGVNLGGGQSAVAQLVERV 173 Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQA 204 + G T T+ LTP Sbjct: 174 KGAPDQTLQLQAERAGQTVTIALTPADV 201 >gi|327393467|dbj|BAK10889.1| flagella basal body P-ring formation protein FlgA precursor [Pantoea ananatis AJ13355] Length = 219 Score = 38.2 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 6/90 (6%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 V+ + + I + L++ +A G VT +N+ Sbjct: 76 VAANCGENRRYIQVQVQVTGDYLVATKLIARGSTVTKEDFRIENGRLDNLPP------RT 129 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + + +V I G P+ L Sbjct: 130 LFTDESVADSVVLRDIQPGQPVSQSMLRQP 159 >gi|238793994|ref|ZP_04637612.1| Flagella basal body P-ring formation protein flgA [Yersinia intermedia ATCC 29909] gi|238726626|gb|EEQ18162.1| Flagella basal body P-ring formation protein flgA [Yersinia intermedia ATCC 29909] Length = 226 Score = 38.2 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LAVG + + ++ + + G + + H G + I G P+ Sbjct: 106 VAGRQLAVGEKIAASDIQMKQGRLDTLPPGALLEPHFAQ------GAVSLRRINAGQPLT 159 Query: 110 LEKL 113 L Sbjct: 160 RNML 163 >gi|256823743|ref|YP_003147706.1| WD40 domain-containing protein beta Propeller [Kangiella koreensis DSM 16069] gi|256797282|gb|ACV27938.1| WD40 domain protein beta Propeller [Kangiella koreensis DSM 16069] Length = 1068 Score = 38.2 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 5/132 (3%) Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138 F + +P++ L G V ++G+ + + +V + + ++ +G A Sbjct: 650 NFTVEADKPDSSIALVGAKVIT--MEGEQVIEDGVVIVEDNRIKAVGKRGDVAIPSGAKT 707 Query: 139 SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLE 198 G I P VDV + + + + +A + A Sbjct: 708 IDVAGKTIIPG-LVDVHWHGPYANDQIQPQTNWNAMASLAFGVTTTH--NPSADTEAVFS 764 Query: 199 LTPMQAKALVAA 210 + MQ ++ A Sbjct: 765 ASEMQKAGVITA 776 >gi|149366255|ref|ZP_01888290.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis CA88-4125] gi|218928918|ref|YP_002346793.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis CO92] gi|229896238|ref|ZP_04511408.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Pestoides A] gi|229897173|ref|ZP_04512329.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897899|ref|ZP_04513050.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. India 195] gi|229902869|ref|ZP_04517986.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Nepal516] gi|115347529|emb|CAL20438.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis CO92] gi|149292668|gb|EDM42742.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis CA88-4125] gi|229680316|gb|EEO76415.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Nepal516] gi|229688940|gb|EEO81005.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. India 195] gi|229693510|gb|EEO83559.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701161|gb|EEO89190.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Pestoides A] gi|320015471|gb|ADV99042.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 232 Score = 38.2 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G ++ ++ + + G + D H G + + I G P+ Sbjct: 112 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFAQ------GAVSQRQINAGQPLT 165 Query: 110 LEKL 113 L Sbjct: 166 RNML 169 >gi|292669969|ref|ZP_06603395.1| flagellar basal body P-ring biosynthesis protein FlgA [Selenomonas noxia ATCC 43541] gi|292648381|gb|EFF66353.1| flagellar basal body P-ring biosynthesis protein FlgA [Selenomonas noxia ATCC 43541] Length = 255 Score = 38.2 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 8/102 (7%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL++ D+ ++P + V + + D L+G + I + Sbjct: 131 RVLVAMTDIRAETEISPANARVEERAVDTVPELTLTD------FTRLEGRVAGRYIRRDT 184 Query: 107 PIRLEKLVDR--GNGGLSSLLPKGKRAATMDISISSAVGGMI 146 I L G + L + + G I Sbjct: 185 VITPPMLAMPLVVRAGNAVELVHNANGILVRAEGVAIESGRI 226 >gi|271962849|ref|YP_003337045.1| hypothetical protein Sros_1304 [Streptosporangium roseum DSM 43021] gi|270506024|gb|ACZ84302.1| hypothetical protein Sros_1304 [Streptosporangium roseum DSM 43021] Length = 242 Score = 38.2 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 55/180 (30%), Gaps = 17/180 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + + + G + + V + + D + + RV Sbjct: 73 RSGDRVTAIQIVQQVGTGQRIPQTAMREVQIADTGIDYVAYADRVRVSEN------YARV 126 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-MVRS 159 +L G + + +V S+ L GK + + +++ D V V+ + Sbjct: 127 TLLPGTLLTGKMVVSS-----SAELGPGKAQVGLALKPGQLPSTLLQ-GDRVQVIHVSGR 180 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 V+ V ++ + R V T+ + + + A S +++L Sbjct: 181 GEGAGTQSRVLAQAALVHSVG----AAGRNGVSGQVTIIVDATVSPTIAAYASNGEIALA 236 >gi|51596007|ref|YP_070198.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis IP 32953] gi|51589289|emb|CAH20910.1| flagella basal body P-ring formation protein FlgA [Yersinia pseudotuberculosis IP 32953] Length = 232 Score = 38.2 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G ++ ++ + + G + D H G + + I G P+ Sbjct: 112 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFAQ------GAVSQRQINAGQPLT 165 Query: 110 LEKL 113 L Sbjct: 166 RNML 169 >gi|255021350|ref|ZP_05293398.1| Flagellar basal-body P-ring formation protein flgA [Acidithiobacillus caldus ATCC 51756] gi|254969213|gb|EET26727.1| Flagellar basal-body P-ring formation protein flgA [Acidithiobacillus caldus ATCC 51756] Length = 226 Score = 38.2 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 11/112 (9%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + ++++ L G V+T L + ++ +++ E G Sbjct: 93 VPVRIVQSQKIVVAAHSLTAGTVLTAGDLALMPGNAASLA------GTPLSSLSEATGRT 146 Query: 98 VRVPILKGDPIRLEKLVDR---GNGGLSSLLPKGK--RAATMDISISSAVGG 144 +R + G PI L G +L+ +G R T+ +I + G Sbjct: 147 LRFGTVAGQPITQSMLAAPIWVHGGNNVTLVAEGDGVRITTLAQAIENGHPG 198 >gi|94994116|ref|YP_602214.1| Capsule biosynthesis protein capA [Streptococcus pyogenes MGAS10750] gi|94547624|gb|ABF37670.1| Capsule biosynthesis protein capA [Streptococcus pyogenes MGAS10750] Length = 430 Score = 38.2 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55 M+ + M VV+ + AL+ + L+ + + P +++ GD+ Sbjct: 38 MQYKKTMATVVALIVALLLFGLIYDLLGVQKNELAAQKSAQPKVKAARVVANGDI 92 >gi|260906843|ref|ZP_05915165.1| SAF domain-containing protein [Brevibacterium linens BL2] Length = 216 Score = 38.2 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 53/183 (28%), Gaps = 18/183 (9%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 V S L G VV+ + L ++ D ++ VR Sbjct: 36 SAANATTRVWASASPLVPGQVVSADDLTIAEVNLADIGDKYLSADAGIPDRSS-----VR 90 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM--- 156 I G+ + L R +D+ + +V ++ VDV Sbjct: 91 TVIAAGELLPASALAPVAEL--------DGRIVAIDV--AGSVPTVVDTGSLVDVWAQPE 140 Query: 157 VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 + L + ++++ V I + S + + L A + L Sbjct: 141 SKGLDDEGIDPEQIVTSAPVSNISREVGSFGVGDGARIEVFVASTELSDVLGALDGNSVL 200 Query: 217 SLV 219 S+V Sbjct: 201 SVV 203 >gi|330860611|emb|CBX70908.1| flagella basal body P-ring formation protein flgA [Yersinia enterocolitica W22703] Length = 161 Score = 38.2 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G +T ++ + + G + + + G + I G P+ Sbjct: 41 VAARQLAAGEKMTLQDIKMKQGRLDTLPPGALLEPNFAQ------GAVSLRQINAGQPLT 94 Query: 110 LEKL 113 L Sbjct: 95 RNML 98 >gi|251789164|ref|YP_003003885.1| flagellar basal body P-ring biosynthesis protein FlgA [Dickeya zeae Ech1591] gi|247537785|gb|ACT06406.1| flagella basal body P-ring formation protein FlgA [Dickeya zeae Ech1591] Length = 222 Score = 38.2 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 25/90 (27%), Gaps = 6/90 (6%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 VS Q I + +++ ++ G + + V + + + Sbjct: 79 VSVSCNQDRRFIQVEVQVTGSYVVAAAPVSRGSELAAGDIRTVRGRIDQLPPRAL----- 133 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 +E G + I G I + Sbjct: 134 -FTPEEAQGAIALRDIAPGQAITQVMIRKP 162 >gi|161484755|ref|NP_670755.2| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis KIM 10] gi|161511337|ref|NP_994331.2| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis biovar Microtus str. 91001] gi|161760560|ref|YP_071832.2| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis IP 32953] gi|218927908|ref|YP_002345783.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis CO92] gi|270487677|ref|ZP_06204751.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis KIM D27] gi|115346519|emb|CAL19395.1| putative flagella basal body P-ring formation protein [Yersinia pestis CO92] gi|270336181|gb|EFA46958.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis KIM D27] Length = 237 Score = 38.2 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E V T P ++ + ++K L G V + +E V G+I D E+ Sbjct: 97 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDPD------EIL 150 Query: 95 GVLVRVPILKGDPIRLEKLVDR 116 G+ ++ I + + +L Sbjct: 151 GLTIKRRIRQLQAVIPSQLEQP 172 >gi|238752870|ref|ZP_04614335.1| Flagella basal body P-ring formation protein FlgA [Yersinia rohdei ATCC 43380] gi|238708909|gb|EEQ01162.1| Flagella basal body P-ring formation protein FlgA [Yersinia rohdei ATCC 43380] Length = 215 Score = 38.2 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 60/153 (39%), Gaps = 17/153 (11%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E +T P ++ V ++K L G VV P+ +E +I + E+ Sbjct: 75 EVAVTVKPDIYLPVWVAKNTLERGKVVAPSDIELKKKNISAAQGSYITNPD------EIV 128 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI---SSAVGGMIKPNDH 151 G V+ I + +L L+ +G+ + + +G +K Sbjct: 129 GFTVKRRIRNLQIVTSAQLEQP------VLVTRGQHVVMIAEQDGIEARMLGEALKNGRK 182 Query: 152 VDVVMVRSLSERKPTVTVVLS--NIRVIAIDHN 182 +++ V++LS ++ +V +R++ I ++ Sbjct: 183 GELIKVKNLSSKRTISAIVEDIGKVRMLGITNS 215 >gi|84515250|ref|ZP_01002612.1| polysialic acid capsule biosynthesis protein SiaC [Loktanella vestfoldensis SKA53] gi|84510533|gb|EAQ06988.1| polysialic acid capsule biosynthesis protein SiaC [Loktanella vestfoldensis SKA53] Length = 343 Score = 37.8 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 9/65 (13%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++ DL G V+T + W P G+ ++ G + + + Sbjct: 286 VVADRDLPAGHVITEADI-WARRPGSGEIAGY--------DFDKVLGRTTTRALPRNTQL 336 Query: 109 RLEKL 113 + L Sbjct: 337 KWSDL 341 >gi|237653587|ref|YP_002889901.1| flagella basal body P-ring formation protein FlgA [Thauera sp. MZ1T] gi|237624834|gb|ACR01524.1| flagella basal body P-ring formation protein FlgA [Thauera sp. MZ1T] Length = 242 Score = 37.8 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A + LI+ L G V+ P L + D + D + G Sbjct: 111 QARVAVVADYLIAARPLRAGQVLGPADLGQRRGDLTALPDNLLTDP------TQASGHHT 164 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 R+ + G P+R + L + A ++ P + V V Sbjct: 165 RIAVAAGSPLRGDMLRVPHAVRQGQTVSVLGVGAGFRVASEGRAMNNAAPGEKVRV 220 >gi|114320051|ref|YP_741734.1| flageller protein FlgA [Alkalilimnicola ehrlichii MLHE-1] gi|114226445|gb|ABI56244.1| flagellar protein FlgA [Alkalilimnicola ehrlichii MLHE-1] Length = 238 Score = 37.8 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 10/119 (8%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 ++ + VL++ L G + + + ++ + + + L G Sbjct: 105 VSARVDTQVEVLVAARPLRRGERLRADSVTTERRQLASLHRPYETE------AEHLIGKE 158 Query: 98 VRVPILKGDPIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 +R + +GD I L G S L G + + G++ D V V Sbjct: 159 LRRSLRRGDLIAGNALAAPQLVQRGRSVTLRAGGGRVQVTGQGKALESGVL--GDIVRV 215 >gi|87306344|ref|ZP_01088491.1| putative flagella basal body P-ring formation protein [Blastopirellula marina DSM 3645] gi|87290523|gb|EAQ82410.1| putative flagella basal body P-ring formation protein [Blastopirellula marina DSM 3645] Length = 287 Score = 37.8 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 16/149 (10%), Positives = 39/149 (26%), Gaps = 7/149 (4%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V+ + + G V+ L F + + + + + PI G Sbjct: 140 VVHTVRPIRRGEVIQAEDLTVQPLNTVRTDGDFETRIESLVGKEAIRSLPAQRPIESGSI 199 Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV 167 + + + + + I + D + V + S+R Sbjct: 200 REPVVIQQNDVVTVIAQIGG------LVIRRDAIAASDASVGDLLMVQAISPDSKRGQQR 253 Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGSTAT 196 + +R + + +T T Sbjct: 254 GEMFQ-VRAYGPGQAMTINSDQRRAATVT 281 >gi|91776305|ref|YP_546061.1| flageller protein FlgA [Methylobacillus flagellatus KT] gi|91710292|gb|ABE50220.1| flagellar protein FlgA [Methylobacillus flagellatus KT] Length = 235 Score = 37.8 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 31/117 (26%), Gaps = 6/117 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + N L++ LA G ++T L + G D + G Sbjct: 103 VQANVQVMAEYLVAAAPLAQGHIITEQDLAKSHGDLAKLPPGVFTDAS------QAIGRA 156 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 V VP+ G +R E L + +S V V Sbjct: 157 VYVPLSAGTVLRQEMLRVLPVVQQGQKVILNTMGEGFKVSAEGTALTSAGDGQRVKV 213 >gi|163794153|ref|ZP_02188126.1| flagellar biosynthesis protein R [alpha proteobacterium BAL199] gi|159180767|gb|EDP65286.1| flagellar biosynthesis protein R [alpha proteobacterium BAL199] Length = 324 Score = 37.8 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 P T V++ ++V + + G V++ N ++W+ + Sbjct: 175 PGSQATPVVVSGRVEPMLSVPVLRNHAMPGEVISENDIQWLRVESRRASMNSVTR----- 229 Query: 89 AMQELDGVLVRVPILKGDPIRLEKL 113 +++L G R PI G PIRL + Sbjct: 230 -LEDLLGRTPRRPIAAGQPIRLTDV 253 >gi|27379567|ref|NP_771096.1| efflux system protein [Bradyrhizobium japonicum USDA 110] gi|27352719|dbj|BAC49721.1| blr4456 [Bradyrhizobium japonicum USDA 110] Length = 461 Score = 37.8 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 23/199 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRL-VSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 K +R I+ A++ G+ + V Q + P + VL + Sbjct: 18 KSSRGGFILTLVTLAILGGLGYLGWTVWHQQPQQANGRNQRPDLPVPVLAAT-------- 69 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 P G I ++ ++DG L+ V +G ++ +V + Sbjct: 70 -----PRIQDVPVYLDGVGAIRALNTVTVRSQVDGKLIAVNFTEGQDVKKGDVVGEIDPA 124 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV--VMVRSLSERKPTVTVVLSNIRVIA 178 L A A N +D+ + S V Sbjct: 125 LYQATYDQAVA-------KKAQDQAQLANQRIDLTRYEQLAASNAGSKQQADTQRALVAQ 177 Query: 179 IDHNIDSDERVLVGSTATL 197 + + +D+ + + ATL Sbjct: 178 TEALVKADQAAIDNAAATL 196 >gi|91976160|ref|YP_568819.1| flagellar basal body P-ring biosynthesis protein FlgA [Rhodopseudomonas palustris BisB5] gi|91682616|gb|ABE38918.1| Flageller protein FlgA [Rhodopseudomonas palustris BisB5] Length = 366 Score = 37.8 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 7/166 (4%) Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87 + +V +T + + ++ + V+ + + P+ V I Sbjct: 187 AAGNVPVRLRVTGTAVETLATVVLTRPVERNEVIKISDVAIERRPKAEVASDAIAR---- 242 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 + G+ R + G +R L + +AA + ++ Sbjct: 243 ---DAVIGMQARRALRSGQIVRSTDLAKPDLVTRDQGVTLIYQAAGIYLTSRGKALETGT 299 Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGS 193 D V+V+ ++S TV + +A+ + S + S Sbjct: 300 EGDVVNVLNLQSKRTVSATVVGRGQVMVTVAVPRILASAQPATAPS 345 >gi|294140178|ref|YP_003556156.1| flagellar basal-body P-ring formation protein FlgA [Shewanella violacea DSS12] gi|293326647|dbj|BAJ01378.1| flagellar basal-body P-ring formation protein FlgA, putative [Shewanella violacea DSS12] Length = 234 Score = 37.8 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 18/137 (13%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V++++ L G ++ + + + Q N + E+ G V+ Sbjct: 113 PVVVARQTLGPGDLIAKGDIVIKYV------EQTLLRGQQFNNLAEVVGTRVKRRTPANQ 166 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 PI L G S+ + + + G + D + + S Sbjct: 167 PIFSNNLCFVCKGDSVSIFARTD-NFEIKTVGEALQDGNL--GDRIRIKNTYSHKT---- 219 Query: 167 VTVVLSNIRVIAIDHNI 183 + RVI + Sbjct: 220 -----VDARVIDVGKVE 231 >gi|212634342|ref|YP_002310867.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella piezotolerans WP3] gi|212555826|gb|ACJ28280.1| Flagellar basal-body P-ring formation protein FlgA [Shewanella piezotolerans WP3] Length = 237 Score = 37.8 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 45/137 (32%), Gaps = 18/137 (13%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++K L G +++ + +E + + Q + + ++ G ++ + Sbjct: 116 PVVVAKSTLGPGDLLSSSDVEIDYVEQTTL------RGQQFDQVDQVVGARLKRRVAPQQ 169 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 PI L G S+ + + + + G + D + + S Sbjct: 170 PIFNNHLCIVCKGDTVSIFARSE-NFEIKTVGEALHDGNL--GDKIRIKNTHSQKTL--- 223 Query: 167 VTVVLSNIRVIAIDHNI 183 N +V A+ Sbjct: 224 ------NAKVTAVGQVE 234 >gi|148656324|ref|YP_001276529.1| SAF domain-containing protein [Roseiflexus sp. RS-1] gi|148568434|gb|ABQ90579.1| SAF domain [Roseiflexus sp. RS-1] Length = 304 Score = 37.8 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 36/224 (16%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 ++ ++V + +L A V+I+ D+ +T + Sbjct: 23 MLLLIVGIMTSLAAAAYGYIESRR---------------TERVVIAARDIPYAAQITVDD 67 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 L + P V Q + G I D + L Sbjct: 68 LAVIELPLHRP-----VQVAGITDPQAVIGQYATRQIGMNDLLNPGMLAASPPDEPVYPN 122 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVR------SLSERKPTVTVVLSN---IRV 176 + + + G + D +++ + + +L + V Sbjct: 123 GRKLERNMVPAPFALTGVGPVTDRDRLNIGFIASDPSLCDRERADVPLGTILDAPATLLV 182 Query: 177 IAIDHNIDSDERVLV-------GSTATLELTPMQAKALVAAQSV 213 ++ + + G A LE+TP QA AL A Q+ Sbjct: 183 MSEGSRSYACRWMSGIPILYIEGEIAYLEMTPAQAHALRALQAA 226 >gi|189016770|ref|YP_001711809.1| hypothetical protein CMS_pCSL0080 [Clavibacter michiganensis subsp. sepedonicus] gi|167728941|emb|CAQ03323.1| hypothetical protein pCSL0080 [Clavibacter michiganensis subsp. sepedonicus] Length = 231 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 70/211 (33%), Gaps = 26/211 (12%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 ++ + A G + + + + Q V +S D+A G +++ L + Sbjct: 42 AIALIVAGALGGVFIYSSNSNSQQ--------------VFVSSRDIARGQIISQTDLGTL 87 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 + G ++ G V + G + + + +P GK Sbjct: 88 D-----ISQGQNTQGIPVADAADVIGQTATVDLPAGSLVTSSSVAP------ALSVPDGK 136 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189 + + + + +DHV +V V + + T V + V A D + + + Sbjct: 137 ALVGLTLKRTQLPAQALVADDHVAIVPVAADAAAAATGAVTSGSSAV-AGDVSATARDEA 195 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 T + + A L + + +++ L Sbjct: 196 ADTITVDVYVPATAAADLTSRAAAGAVAIYL 226 >gi|238927616|ref|ZP_04659376.1| SAF domain protein [Selenomonas flueggei ATCC 43531] gi|238884541|gb|EEQ48179.1| SAF domain protein [Selenomonas flueggei ATCC 43531] Length = 254 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 8/102 (7%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL++ D+ + +TP + + + + D L G + I KG Sbjct: 130 RVLVAMTDIRMDEAITPANAHIEESSVDTLPETTVTD------FSRLAGRVAGRYIRKGM 183 Query: 107 PIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMI 146 I L + G L T+ + G I Sbjct: 184 VIAPPLLAMPRVVSAGSPVELVAESGGITIRAEGVALEAGRI 225 >gi|170781110|ref|YP_001709442.1| putative secreted protein [Clavibacter michiganensis subsp. sepedonicus] gi|169155678|emb|CAQ00798.1| putative secreted protein [Clavibacter michiganensis subsp. sepedonicus] Length = 212 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 57/188 (30%), Gaps = 22/188 (11%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + V+ + L G V + L V + D ++ + DG++V + Sbjct: 44 SSVVVMAAASALDAGTTVHASDLVPVRVRIDGAADHYV-------SPDSADGLVVTRFVG 96 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160 G+ + L + ++ I S+ ++ P VD+ S Sbjct: 97 AGELVPRSSLSSADARTTA----------SVVIPTSAGADHLVAPGTVVDIWAAAVKGSG 146 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + V++S V + + L + A++A+ + L Sbjct: 147 TNAYDAPRVIVSGATVAQVIRPEGFVADQDH-TQVQLTVPREDVAAVLASTDAGD-QMSL 204 Query: 221 RSIADLNP 228 + D Sbjct: 205 VPVGDAGA 212 >gi|77919673|ref|YP_357488.1| nucleoside phosphorylase [Pelobacter carbinolicus DSM 2380] gi|77545756|gb|ABA89318.1| nucleoside phosphorylase, putative [Pelobacter carbinolicus DSM 2380] Length = 258 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 7/85 (8%) Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 + + ++ ++ I ER L + A A +L VLR+I D Sbjct: 132 RTLTTAAPLLNVEQKIFWRERRKA-----LAVDMESAAVARVASEAGRLFFVLRAICDEA 186 Query: 228 --PSSSEDSDVWDVQEEGKEIQIIK 250 P S+ D+ D + +++++ Sbjct: 187 ARPVSAALFDLVDEFGRPRPLRLVR 211 >gi|332186227|ref|ZP_08387972.1| response regulator [Sphingomonas sp. S17] gi|332013595|gb|EGI55655.1| response regulator [Sphingomonas sp. S17] Length = 396 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 74/235 (31%), Gaps = 13/235 (5%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI-NVLISKGDLAVGMVVTPNILEWV 69 ++ + AG L ++ + + NV ++ + +V + Sbjct: 125 IAAPVRVAAGGSGGILGESAAIREVRALVRRVGPTVANVCVTGRSGSGRTLVAHALHAVS 184 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 + + D Q + ++ G ++ ++L L L G Sbjct: 185 MDGGGTLPRIDLRDPEQWELLNDVSGTVLLR--------HPDRLDAVTQARLLDRLTPGL 236 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189 R ++ ++ + + +D+ V L+ R+ ++ + +A + R+ Sbjct: 237 RCISIADGLAPLSAPLHRRLCTIDI-AVPPLAARRDDAVILARHFAALAGETYGHMQVRI 295 Query: 190 LVGSTATLELT--PMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 + A + +T P + + L AA A L L + D + Sbjct: 296 TPAAEAIIAVTDWPDEVRGLAAAIERAVL-LSDDGVVDAAAIRPAGGASARPDDG 349 >gi|20560097|gb|AAM27839.1|AF498418_13 ORF_13; similar to NeuB family [Pseudomonas aeruginosa] gi|20560120|gb|AAM27859.1|AF498419_13 ORF_13; similar to NeuB family [Pseudomonas aeruginosa] Length = 351 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 10/65 (15%) Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + D+ G +T + V P + E+ G V I PI Sbjct: 296 AIRDIEAGEPLTAENIRSVR-PGYGLSPKHYT---------EVLGKTAAVKIPAHTPIHW 345 Query: 111 EKLVD 115 EKL D Sbjct: 346 EKLSD 350 >gi|300743849|ref|ZP_07072869.1| putative N-acetyl neuramic acid synthetase NeuB [Rothia dentocariosa M567] gi|300380210|gb|EFJ76773.1| putative N-acetyl neuramic acid synthetase NeuB [Rothia dentocariosa M567] Length = 747 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ +A G V+T + + P + ++ +L G ++ + +G Sbjct: 405 LVATRSIAKGEVITEADVTVKS-PGRGLQPNYL---------PQLLGRTIQRDVEEGSFF 454 Query: 109 RLEKL 113 L Sbjct: 455 FEGDL 459 >gi|222523711|ref|YP_002568181.1| hypothetical protein Chy400_0417 [Chloroflexus sp. Y-400-fl] gi|222447590|gb|ACM51856.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl] Length = 1250 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 23/197 (11%), Positives = 56/197 (28%), Gaps = 4/197 (2%) Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 + + + + + P + + Q L + +P+L P+ Sbjct: 943 TRQITITLTLPTGTHPSIQVPITDTTTLSLTAPAMSAITQTLRTEVQALPVLAASPLTGA 1002 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171 V + + T+ I IS+ ++ + + V+ S++ T + Sbjct: 1003 ATVLPSDSYIYRHQITNNGNVTVPIDISATTADLVGLDTYNTTVLTPSVTLAPGASTEIA 1062 Query: 172 SNIRVIAIDHNIDSDERVLVGSTATLELTP---MQAKALVAAQSVA-KLSLVLRSIADLN 227 I V + +T QA + +V + + LRS + + Sbjct: 1063 VRITVPTGAQTTTPSGNPVRATTVITATPRGFGSQAITMTDTTTVGLRYAAELRSSYEQD 1122 Query: 228 PSSSEDSDVWDVQEEGK 244 + + Sbjct: 1123 VRAGREVVFLHTLRNTS 1139 >gi|154685362|ref|YP_001420523.1| YhbJ [Bacillus amyloliquefaciens FZB42] gi|154351213|gb|ABS73292.1| YhbJ [Bacillus amyloliquefaciens FZB42] Length = 221 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 27/169 (15%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53 M RL+ I + V A++ G S H+V+T+E I + Sbjct: 12 MNRGRLILTNIIGLIVVLAIIGGGAYYYYQSTHYVKTDEAKVAGDMAAITAPAAGKVTDW 71 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 +L G V+ N + I + +DG +V+ + G + Sbjct: 72 NLDEGKEVSKNDVVAK-----------IKGQQNADVKAIMDGTIVKNEVKNGQMV----- 115 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + + + +I I+ + VDV++ + Sbjct: 116 ----QAGTTIAQEIDMKHLYITANIKETDIRDIEVGNKVDVIVDGDPNT 160 >gi|119871747|ref|YP_929754.1| periplasmic binding protein [Pyrobaculum islandicum DSM 4184] gi|119673155|gb|ABL87411.1| periplasmic binding protein [Pyrobaculum islandicum DSM 4184] Length = 723 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 6/49 (12%), Positives = 18/49 (36%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL 49 M ++G++++ + A+ A +A ++V+ Sbjct: 1 MNTRVVIGVLLAVILAVFALYLAKSPTGGGVSNATAPPRAAGPSPVSVV 49 >gi|33573139|emb|CAE36786.1| flagella basal body P-ring formation protein [Bordetella parapertussis] Length = 291 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 6/108 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 ++ +A G + L + G I D + G+ I G Sbjct: 168 QYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDAA------AILGMRPAHRIAAGQ 221 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 PI+ L + + R +S P+ V V Sbjct: 222 PIKGAGLRSAESVSRGQSVRITARGNGFVVSSEGQALDNAPPSATVQV 269 >gi|311280021|ref|YP_003942252.1| flagella basal body P-ring formation protein FlgA [Enterobacter cloacae SCF1] gi|308749216|gb|ADO48968.1| flagella basal body P-ring formation protein FlgA [Enterobacter cloacae SCF1] Length = 219 Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 10/102 (9%), Positives = 29/102 (28%), Gaps = 6/102 (5%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71 + A + V + + + +++ +A G + + Sbjct: 61 ALSVAGFGRLWGNVNVLAQCGTDKRYLQVVVEATGDYVVAAQAIARGATLQAESVTLKRG 120 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 + + + D + G + + G P++L L Sbjct: 121 RLDQLPPKTMLDPA------QAQGAVSLRDLAPGQPVQLSML 156 >gi|254500840|ref|ZP_05112991.1| flagella basal body P-ring formation protein FlgA [Labrenzia alexandrii DFL-11] gi|222436911|gb|EEE43590.1| flagella basal body P-ring formation protein FlgA [Labrenzia alexandrii DFL-11] Length = 152 Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 A I + +++ + G + L FP + + +L G Sbjct: 17 AAPSAFAASIELPVARQTIPAGSEIGHRDLVERKFPSRTATQFAV-----ASHRSQLVGQ 71 Query: 97 LVRVPILKGDPIRLEKLVDR 116 + R +L G PI + + Sbjct: 72 VTRRTLLPGQPIPINSVEQP 91 >gi|163850064|ref|YP_001638107.1| FlgA, flagellar basal-body P-ring formation protein [Methylobacterium extorquens PA1] gi|240137198|ref|YP_002961667.1| Flagella basal body p ring formation protein FlgA [Methylobacterium extorquens AM1] gi|254559210|ref|YP_003066305.1| flagella basal body p ring formation protein FlgA [Methylobacterium extorquens DM4] gi|163661669|gb|ABY29036.1| FlgA, flagellar basal-body P-ring formation protein [Methylobacterium extorquens PA1] gi|240007164|gb|ACS38390.1| Flagella basal body p ring formation protein FlgA [Methylobacterium extorquens AM1] gi|254266488|emb|CAX22252.1| Flagella basal body p ring formation protein FlgA [Methylobacterium extorquens DM4] Length = 164 Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 5/100 (5%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 + A+ S + + + + + + + G + ++L A+P Sbjct: 9 GLVLAALAAGSAQPIAPAQAVEGMANAELMLPVPTVTIYPGDTIKESMLRMQAYPATYRA 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 + D A + G + R +L G+P+ + + D Sbjct: 69 RTAVID-----ASAAIAGRVARRMLLPGEPVPVNAVDDPR 103 >gi|291617016|ref|YP_003519758.1| FlgA [Pantoea ananatis LMG 20103] gi|291152046|gb|ADD76630.1| FlgA [Pantoea ananatis LMG 20103] Length = 219 Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 6/90 (6%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 V+ + + I + L++ +A G V+ +N+ Sbjct: 76 VAANCGENRRYIQVQVQVTGDYLVATKLIARGSTVSKEDFRIENGRLDNLPP------RT 129 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + + +V I G P+ L Sbjct: 130 LFTDESVADSVVLRDIQPGQPVSQSMLRQP 159 >gi|119715450|ref|YP_922415.1| putative signal peptide [Nocardioides sp. JS614] gi|119536111|gb|ABL80728.1| conserved hypothetical protein; putative signal peptide [Nocardioides sp. JS614] Length = 224 Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 47/186 (25%), Gaps = 13/186 (6%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 + L+ V + ++V GD G + L + D Sbjct: 33 LWVGVLIVAVSVVAGARLLAAADDTVSVWAVSGDAGPGAELDAGDLVAHRVRFADAEDLG 92 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 +L + + G+ + L +G + LP A Sbjct: 93 RYFTLDDELPADLR---LVRGVTAGELLPRSALGAADDGADTVELP---VAV-----DVE 141 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELT 200 V ++ VDV +V + L+ V+ + L + Sbjct: 142 LVPPSVRAGSVVDVYLVGR--GNRDHTGPALAGATVVDAPGIDTTFGSASGHRQLVLAVP 199 Query: 201 PMQAKA 206 A A Sbjct: 200 QADAAA 205 >gi|256393466|ref|YP_003115030.1| glycoside hydrolase family 3 domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256359692|gb|ACU73189.1| glycoside hydrolase family 3 domain protein [Catenulispora acidiphila DSM 44928] Length = 1343 Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 46/193 (23%), Gaps = 7/193 (3%) Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + V V P +Q V I + + P Sbjct: 899 ATINVTVNGVTGTAPIVVRDPFTLQAPAIVKPATSITATETFTNSGDKAVRDVRFGLTTP 958 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186 G A + S + P V ++ T + Sbjct: 959 SGWTA----TANSPVSVSSVAPGQTVTARWSVAVPATASPGTQTELDATTTLTGAAGSYT 1014 Query: 187 ERVLVGSTATLELTPMQAKALVAAQS--VAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 E + T T TP QA ++ S L +VL + +D S + Sbjct: 1015 ENSVSAVTVTSGATPQQATPVITGTSPAAGSLQVVLNNPSDTATSVTAVKWQLGSLSGTA 1074 Query: 245 EIQI-IKAGVIVN 256 + I AG Sbjct: 1075 PVSATIAAGASTT 1087 >gi|254381329|ref|ZP_04996694.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194340239|gb|EDX21205.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 231 Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 11/123 (8%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + I VL+ D+ G +T L + + G Sbjct: 53 TASGQRIAVLVVARDVPAGAPITDADLTTASLALDPA-----VKAVPAAKKSGTVGQRAA 107 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 V + G + ++ SL+ G++ + + S + P V +V Sbjct: 108 VALKAGALLSPSQVTSV------SLVKPGEQLVGVALKPSQLPASRLAPGQRVLIVSTPD 161 Query: 160 LSE 162 ++ Sbjct: 162 AAQ 164 >gi|310796524|gb|EFQ31985.1| inositol monophosphatase [Glomerella graminicola M1.001] Length = 326 Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 22/59 (37%) Query: 189 VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 G T+ P + A+ +L L +R A ++ + V+E K ++ Sbjct: 259 EEAGGLVTVANPPEDTSIIPEAKLGGRLYLAIRPAAATETETARQAQERVVRETWKRVR 317 >gi|167623355|ref|YP_001673649.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella halifaxensis HAW-EB4] gi|167353377|gb|ABZ75990.1| SAF domain protein [Shewanella halifaxensis HAW-EB4] Length = 257 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 18/137 (13%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++K + G +++ +E + + HQ + E+ G ++ + G Sbjct: 136 PVVVAKSTMGPGDLLSRGDIELEYIEQTTL------RGHQFEEISEVVGARLKRRVAPGQ 189 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 PI +L G S+ + + +I D V + S Sbjct: 190 PIFANQLCIVCKGDSVSIYARSE---NFEIKTVGEALHDANVGDKVRIKNSHSHKNL--- 243 Query: 167 VTVVLSNIRVIAIDHNI 183 + RV + Sbjct: 244 ------DARVTGVGQVE 254 >gi|153947896|ref|YP_001401294.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis IP 31758] gi|152959391|gb|ABS46852.1| flagella basal body P-ring formation protein FlgA [Yersinia pseudotuberculosis IP 31758] Length = 232 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ L G ++ ++ + + G + D H G + + I G P+ Sbjct: 112 VAVRRLVAGEKISAQDIQMKQGRLDTLPPGALLDAHFAQ------GAVSQRQINAGQPLT 165 Query: 110 LEKL 113 L Sbjct: 166 RNML 169 >gi|257140552|ref|ZP_05588814.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia thailandensis E264] gi|284159417|ref|YP_440797.3| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia thailandensis E264] gi|83652486|gb|ABC36549.1| FlgA family protein [Burkholderia thailandensis E264] Length = 538 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 407 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTMLPLAVITD------AQQAVGATA 460 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 461 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGHGFTISTEGSVLNNAAPGQQVRV 516 >gi|72122783|gb|AAZ64969.1| Flageller protein FlgA [Ralstonia eutropha JMP134] Length = 290 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 26/124 (20%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ L G VTP LE + I D ++ G + + G P+ Sbjct: 170 YVAVRALGPGEPVTPADLEVRQGDLSTLPKAVITDPS------QVVGAVTANRVAAGSPM 223 Query: 109 RLEKL------------VDRGNGGLSSLLPKGKRA--------ATMDISISSAVGGMIKP 148 R + L G + +GK + + V G+++ Sbjct: 224 RTDLLKKSIAVRSGQTVTVAVEGDAFQITSEGKVLADAAIGNSVQIRLRNGQVVSGLVRS 283 Query: 149 NDHV 152 D V Sbjct: 284 GDTV 287 >gi|33592475|ref|NP_880119.1| flagellar basal body P-ring biosynthesis protein FlgA [Bordetella pertussis Tohama I] gi|33572121|emb|CAE41663.1| flagella basal body P-ring formation protein [Bordetella pertussis Tohama I] gi|332381892|gb|AEE66739.1| flagellar basal body P-ring biosynthesis protein FlgA [Bordetella pertussis CS] Length = 236 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 28/108 (25%), Gaps = 6/108 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 ++ +A G + L + G I D + G+ I G Sbjct: 113 QYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDAA------AILGMRPAHRIAAGQ 166 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 PI+ L + + R +S P V V Sbjct: 167 PIKGAGLRSAESVSRGQSVRITARGNGFVVSSEGQALDNAPPGATVQV 214 >gi|328910928|gb|AEB62524.1| Putative efflux system component yhbJ [Bacillus amyloliquefaciens LL3] Length = 221 Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 27/169 (15%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53 M RL+ I + V A++ G S H+V+T+E I + Sbjct: 12 MNRGRLILTNIIGLIVVLAIIGGGAYYYYQSTHYVKTDEAKVAGDMAAITAPAAGKVTDW 71 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 +L G V+ N + I + +DG +V+ + G + Sbjct: 72 NLDEGKEVSKNDVVAK-----------IKGQQNADVKAIMDGTIVKNQVKNGQMV----- 115 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + + + +I I+ + VDVV+ + Sbjct: 116 ----QAGTTIAQEIDMKHLYITANIKETDIKDIEVGNKVDVVVDGDPNT 160 >gi|300716214|ref|YP_003741017.1| flagellar biosynthesis, assembly of basal-body periplasmic P ring [Erwinia billingiae Eb661] gi|299062050|emb|CAX59166.1| Flagellar biosynthesis, assembly of basal-body periplasmic P ring [Erwinia billingiae Eb661] Length = 222 Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 6/90 (6%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 V+ + Q I + L++ + G +T + ++ + + + Sbjct: 79 VAANCDQNRRYIQVQVQVTGDYLVAARQVIRGGTLTADDVKIQRGRLDTLPARTV----- 133 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + +E+ + I+ G P+ + Sbjct: 134 -MSAEEVTDAVALRDIIPGQPLTQMMVRQP 162 >gi|20559814|gb|AAM27589.1|AF498403_8 ORF_8; similar to NeuB family [Pseudomonas aeruginosa] Length = 361 Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 11/82 (13%) Query: 25 RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84 L SP+ A V ++ D+ GM++T + L Sbjct: 287 ALGSPYKAPQPSEWDTRQAARQQV-VAARDIEAGMIITRDDLTTARSGHGLPP------- 338 Query: 85 HQPNAMQELDGVLVRVPILKGD 106 ++ EL G + L G+ Sbjct: 339 ---TSLWELVGSTSKRAFLAGE 357 >gi|163845986|ref|YP_001634030.1| hypothetical protein Caur_0391 [Chloroflexus aurantiacus J-10-fl] gi|163667275|gb|ABY33641.1| hypothetical protein Caur_0391 [Chloroflexus aurantiacus J-10-fl] Length = 1093 Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 23/197 (11%), Positives = 56/197 (28%), Gaps = 4/197 (2%) Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 + + + + + P + + Q L + +P+L P+ Sbjct: 786 TRQITITLTLPTGTHPSIQVPITDTTTLSLTAPAMSAITQTLRTEVQALPVLAASPLTGA 845 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171 V + + T+ I IS+ ++ + + V+ S++ T + Sbjct: 846 ATVLPSDSYIYRHQITNNGNVTVPIDISATTADLVGLDTYNTTVLTPSVTLAPGASTEIA 905 Query: 172 SNIRVIAIDHNIDSDERVLVGSTATLELTP---MQAKALVAAQSVA-KLSLVLRSIADLN 227 I V + +T QA + +V + + LRS + + Sbjct: 906 VRITVPTGAQTTTPSGNPVRATTVITATPRGFGSQAITMTDTTTVGLRYAAELRSSYEQD 965 Query: 228 PSSSEDSDVWDVQEEGK 244 + + Sbjct: 966 VRAGREVVFLHTLRNTS 982 >gi|33601537|ref|NP_889097.1| flagellar basal body P-ring biosynthesis protein FlgA [Bordetella bronchiseptica RB50] gi|33575973|emb|CAE33052.1| flagella basal body P-ring formation protein [Bordetella bronchiseptica RB50] Length = 236 Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 28/108 (25%), Gaps = 6/108 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 ++ +A G + L + G I D + G+ I G Sbjct: 113 QYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDAA------AILGMRPAHRIAAGQ 166 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 PI+ L + + R +S P V V Sbjct: 167 PIKGAGLRSAESVSRGQSVRITARGNGFVVSSEGQALDNAPPGATVQV 214 >gi|310816832|ref|YP_003964796.1| flagella basal body P-ring formation protein FlgA [Ketogulonicigenium vulgare Y25] gi|308755567|gb|ADO43496.1| flagella basal body P-ring formation protein FlgA [Ketogulonicigenium vulgare Y25] Length = 138 Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 10/113 (8%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 + ++++ +L ++T ++L G I D E+ G+ R PI Sbjct: 14 TAQADYVVAQRNLPANGIITADLLGLRP----GEVPGAITDPS------EIIGLEARTPI 63 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 G P++ + + ++ + I P D + V+ Sbjct: 64 YAGRPLQASQFGQPAIVQRNQVIAMQFTRGALTIMAEGRALERAGPGDLIRVM 116 >gi|291613034|ref|YP_003523191.1| flagella basal body P-ring formation protein FlgA [Sideroxydans lithotrophicus ES-1] gi|291583146|gb|ADE10804.1| flagella basal body P-ring formation protein FlgA [Sideroxydans lithotrophicus ES-1] Length = 238 Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 8/80 (10%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + +++L++ LA V++ + G + Q+ G Sbjct: 107 VQADIKVTVDMLVASRPLAQNTVLSASDFRLQN--------GELGQPGILIDPQQAIGKT 158 Query: 98 VRVPILKGDPIRLEKLVDRG 117 +R PI G +R + L Sbjct: 159 LRFPIGAGQVLRQDMLRAPY 178 >gi|170024651|ref|YP_001721156.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis YPIII] gi|169751185|gb|ACA68703.1| flagella basal body P-ring formation protein FlgA [Yersinia pseudotuberculosis YPIII] Length = 269 Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ L G ++ ++ + + G + D H G + + I G P+ Sbjct: 149 VAVRRLVAGEKISAQDIQMKQGRLDTLPPGALLDAHFAQ------GAVSQRQINAGQPLT 202 Query: 110 LEKL 113 L Sbjct: 203 RNML 206 >gi|59889777|emb|CAH19132.1| Lateral flagellar P-ring addition protein (FlgA-like) [Escherichia coli] gi|284920041|emb|CBG33097.1| lateral flagellar P-ring addition protein (FlgA-like) [Escherichia coli 042] Length = 245 Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 9/145 (6%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + P + V+++K +A +T N +E + + + G+ Sbjct: 110 VAVRPDVLVPVVMAKSLVARDTPLTANDVELKPYNVSA------QRREVLMELDDAIGLS 163 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + + G PI E+LV G + ++A + S+ + + V V Sbjct: 164 SKHALQPGKPITKEELVSPVLVGRDQPVMIVYQSAGITASMPGVALKNGRKGEMVKV--- 220 Query: 158 RSLSERKPTVTVVLSNIRVIAIDHN 182 R+ S ++ +V + V + Sbjct: 221 RNASSQRVISAMVAESGVVTTVGAE 245 >gi|144899766|emb|CAM76630.1| NeuB [Magnetospirillum gryphiswaldense MSR-1] Length = 337 Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 10/92 (10%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 + + + + A L + D+A G +++ + + I Sbjct: 256 LVSAAMGDGTKRILPTEEKWRAAARKSLYAARDIAAGQIISDDDIAIRR------PADGI 309 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 P+ + + G R I G I + + Sbjct: 310 H----PHHLDLVIGRTARQAIACGALISWDMV 337 >gi|238758114|ref|ZP_04619294.1| Flagella basal body P-ring formation protein flgA [Yersinia aldovae ATCC 35236] gi|238703652|gb|EEP96189.1| Flagella basal body P-ring formation protein flgA [Yersinia aldovae ATCC 35236] Length = 226 Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G ++ +E + + G + D H G + I G P+ Sbjct: 106 VATRRLAAGEKISMPDIEMKQGRLDTLPPGALLDTHFAQ------GAVSLRQINAGQPLT 159 Query: 110 LEKL 113 L Sbjct: 160 RNML 163 >gi|254251187|ref|ZP_04944505.1| Flagellar basal body P-ring biosynthesis protein [Burkholderia dolosa AUO158] gi|124893796|gb|EAY67676.1| Flagellar basal body P-ring biosynthesis protein [Burkholderia dolosa AUO158] Length = 370 Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G ++ L + I D + G Sbjct: 239 QAKVAVQATYYVAARQIAPGEPLSAADLVARDGDLTTLPVAVITDPA------QAVGATA 292 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 I G P+R + L + + A IS + P V V Sbjct: 293 LARISAGLPLRQDMLKSAASVSAGQTVRVVAAGAGFTISAEGSALANAAPGQSVRV 348 >gi|119510456|ref|ZP_01629589.1| hypothetical protein N9414_01682 [Nodularia spumigena CCY9414] gi|119464878|gb|EAW45782.1| hypothetical protein N9414_01682 [Nodularia spumigena CCY9414] Length = 522 Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 15/214 (7%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 R +++ V + G R A +G+ V Sbjct: 38 KRSWALILGIVLLIAGGGFGWRWWQNSFAGNAPPGDRAAAGQ----------PMGIPVKL 87 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 +E + +V GF++D E+DG + ++ +GD ++ +++ R S+ Sbjct: 88 ATVETETIEDSSVIGGFLEDPGSVELKPEIDGRINQILFKEGDRVQKGQVIIRLQ---SA 144 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI 183 R A + + A +K + + R L N + A I Sbjct: 145 DTQARLRQAKASLDRTQARLAELKAGTRPEEIA--QAKARLVQAETRLKNAQGGARPEEI 202 Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 E + + + LEL + + ++ +S Sbjct: 203 AQAEAQIEVAKSDLELAQSRGQRYQQLRTDGAVS 236 >gi|301620086|ref|XP_002939414.1| PREDICTED: leucine-rich repeat-containing protein 4-like [Xenopus (Silurana) tropicalis] Length = 641 Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 2/60 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK T+++ V L A ++ + Q + + ++ D+ G Sbjct: 517 MKTTKIIIGCFVAVTLLAAAMLIVFYKLRKRHQQRSTVAAAR--TVEIIQVDEDIPSGSP 574 >gi|310764864|gb|ADP09814.1| Flagella basal body P-ring formation protein FlgA [Erwinia sp. Ejp617] Length = 234 Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 6/65 (9%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++K +L G ++ +E ++ G + D++ ++ G + G PI Sbjct: 111 WVAKKNLPAGSILRAEDIESHTGSLDHQPAGILFDIN------QIVGQTTTRALNVGSPI 164 Query: 109 RLEKL 113 +L Sbjct: 165 VQNQL 169 >gi|302695743|ref|XP_003037550.1| hypothetical protein SCHCODRAFT_49211 [Schizophyllum commune H4-8] gi|300111247|gb|EFJ02648.1| hypothetical protein SCHCODRAFT_49211 [Schizophyllum commune H4-8] Length = 580 Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 39/129 (30%), Gaps = 12/129 (9%) Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 + + P + ++P + + P+ + L+ L+S Sbjct: 1 MSFAPTPASLPPKHVVYRFNEPKGLP-----VNYHPLNPVQFLLKAALLHPDKLALASPD 55 Query: 126 PKGKRAATMDISIS-------SAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 + + + + I+P D V V+ S V+ + V A Sbjct: 56 GPHPVYYSFAVWAQRVQNLAYALIQARIRPGDRVAVIAPNSPMIADSYFGVLAARAIVCA 115 Query: 179 IDHNIDSDE 187 ++ + D+ Sbjct: 116 VNTRLRPDD 124 >gi|293606491|ref|ZP_06688849.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292815114|gb|EFF74237.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 116 Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 L + Q L+ A +L L LR + D + Sbjct: 1 MLAVPVEQINELILASRAGRLQLALRPVGDDAVPDAT 37 >gi|291085566|ref|ZP_06353375.2| flagella basal body P-ring formation protein FlgA [Citrobacter youngae ATCC 29220] gi|291071317|gb|EFE09426.1| flagella basal body P-ring formation protein FlgA [Citrobacter youngae ATCC 29220] Length = 267 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 6/102 (5%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71 + + A + V + + N N +++ +A G +TP + Sbjct: 109 ALSVSGNAKLWGNVNVLARCANEKRYLQVNVQATGNYVVAAAPVARGSALTPASVTLKRG 168 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 + + + D + ++ + ++ G PI+L L Sbjct: 169 RLDQLPPRAVLD------LNQVQDAVSLRDLVPGQPIQLSML 204 >gi|77359715|ref|YP_339290.1| flagellar biosynthesis; assembly of basal-body periplasmic P-ring [Pseudoalteromonas haloplanktis TAC125] gi|76874626|emb|CAI85847.1| putative flagellar biosynthesis; assembly of basal-body periplasmic P-ring [Pseudoalteromonas haloplanktis TAC125] Length = 235 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 6/79 (7%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 + + + V+++ +LA G V+T L + V + L Sbjct: 102 AQYVHVRVTETAPVVVANVNLARGEVITAAHLSIE------MRSTHFIRVQYLDNPALLI 155 Query: 95 GVLVRVPILKGDPIRLEKL 113 G + I G P+ L ++ Sbjct: 156 GSRSKRNIRSGMPLLLSQI 174 >gi|163733144|ref|ZP_02140588.1| flagella basal body P-ring formation protein FlgA, putative [Roseobacter litoralis Och 149] gi|161393679|gb|EDQ18004.1| flagella basal body P-ring formation protein FlgA, putative [Roseobacter litoralis Och 149] Length = 140 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 11/109 (10%), Positives = 35/109 (32%), Gaps = 10/109 (9%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V++ + ++ + + I + + + M ++ G R + G Sbjct: 20 EVVVPAKTIRANATISASDITLKP----------IKNENAYSLMADVVGQEARTTLYAGR 69 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 PI + + + ++ +++ + I D V ++ Sbjct: 70 PILFDDVGPPAIVSRNQIVLLSYQSSGLKILTEGRALQRGGVGDRVRIM 118 >gi|269958186|ref|YP_003327974.1| SAF domain protein [Xylanimonas cellulosilytica DSM 15894] gi|269306867|gb|ACZ32416.1| SAF domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 234 Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 60/188 (31%), Gaps = 24/188 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 KL R +VV+ V + G + +E VL + + G V+ Sbjct: 35 KLQRRPVLVVASVATVCLGALVSVWAFQSTSDAQE-----------VLAVRETVVRGQVI 83 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T + L V + + + G + ++ G + E++ D Sbjct: 84 TKDDLMSVRISVDPA-----LHPVATSQSATVVGKRAALDLVAGGVVTAEQVTDTP---- 134 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRVIAI 179 + G+ ++++ + I+ D V +V + VT N V+ I Sbjct: 135 --VPADGQSVVGLNLTSAMLPAQQIRVGDKVRIVSTSGQTPGVETDVVTPTTVNAEVVGI 192 Query: 180 DHNIDSDE 187 + S Sbjct: 193 ASDDTSGN 200 >gi|188534174|ref|YP_001907971.1| Flagellar biosynthesis; assembly of basal-body periplasmic P ring [Erwinia tasmaniensis Et1/99] gi|188029216|emb|CAO97088.1| Flagellar biosynthesis; assembly of basal-body periplasmic P ring [Erwinia tasmaniensis Et1/99] Length = 222 Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 8/83 (9%), Positives = 26/83 (31%), Gaps = 6/83 (7%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 V+ + + I + +++ ++ G ++ + + + + + Sbjct: 79 VAANCDRNRRYIQVQVQVTGSYVVATRQISQGEAISASDVRMEQGRLDTLPARTLMQP-- 136 Query: 87 PNAMQELDGVLVRVPILKGDPIR 109 E G + I G P+ Sbjct: 137 ----GEAIGAVTLRDITPGQPMT 155 >gi|13472577|ref|NP_104144.1| flagellar basal body P-ring biosynthesis protein FlgA [Mesorhizobium loti MAFF303099] gi|14023323|dbj|BAB49930.1| flagellar protein; FlgA [Mesorhizobium loti MAFF303099] Length = 174 Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 19/167 (11%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71 + + ALV G + + ++ + PA + VLI + G + L+ V Sbjct: 14 ALILALVTGGVPAFAQESANPSATQIASNQPAGEV-VLIPNRVIYPGETIELAALKQVTL 72 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRGNGGLSSLLP 126 + +EL G + + +L G I R LV++G + Sbjct: 73 IAGKHKPDAMATHA-----EELQGKIAKRTLLPGRYIPTAAIREAWLVEQGAAVQVFFIA 127 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173 G ++ ++P D++ VR+ K V+++ Sbjct: 128 GGLTITATAVT--------LQPGSAGDLIKVRNSDSGKILSGTVMAD 166 >gi|226951711|ref|ZP_03822175.1| RND family efflux transporter MFP subunit [Acinetobacter sp. ATCC 27244] gi|226837501|gb|EEH69884.1| RND family efflux transporter MFP subunit [Acinetobacter sp. ATCC 27244] Length = 393 Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 2/99 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL-ISKGDLAVGM 59 MK ++ I V+ A+ G++ P + + P + V + +L Sbjct: 1 MK-KQITVIAVAVGVAISGGLLYTATNKPDAPNPQAAAAQMPVPQVPVAEVITRELNPTA 59 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 T + + ++ G I+ V P G ++ Sbjct: 60 EYTGYLSAPQSVEIKSRVGGVINSVSVPEGSYVRKGQVL 98 >gi|259907630|ref|YP_002647986.1| Flagella basal body P-ring formation protein FlgA [Erwinia pyrifoliae Ep1/96] gi|224963252|emb|CAX54736.1| Flagella basal body P-ring formation protein FlgA [Erwinia pyrifoliae Ep1/96] gi|283477472|emb|CAY73388.1| Flagella basal body P-ring formation protein flgA precursor [Erwinia pyrifoliae DSM 12163] Length = 234 Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 6/65 (9%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++K +L VG V+ +E ++ G + D++ ++ G + G PI Sbjct: 111 WVAKKNLPVGSVIRAEDIESHTGSLDHQPAGILFDIN------QIVGQTTTRALNVGSPI 164 Query: 109 RLEKL 113 +L Sbjct: 165 VQNQL 169 >gi|297538892|ref|YP_003674661.1| flagella basal body P-ring formation protein FlgA [Methylotenera sp. 301] gi|297258239|gb|ADI30084.1| flagella basal body P-ring formation protein FlgA [Methylotenera sp. 301] Length = 251 Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 6/114 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 L++ LA G VT + + + + G + + G V + + G Sbjct: 128 QYLVAASPLAQGQTVTEQDMMFESGDLTQLPAGVFTEQS------QAIGRTVNISMNAGA 181 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 +R E L L + + +S V V + Sbjct: 182 VLRQELLKVAPVVQLGQTVMVTSKGNGFSVSAEGLSMAKANEGQVVQVKVASGQ 235 >gi|253996323|ref|YP_003048387.1| flagella basal body P-ring formation protein FlgA [Methylotenera mobilis JLW8] gi|253983002|gb|ACT47860.1| flagella basal body P-ring formation protein FlgA [Methylotenera mobilis JLW8] Length = 265 Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 26/129 (20%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 L++ LA G VVT + L + + + G D + + G +V + + G Sbjct: 142 QYLVAAVPLAQGRVVTADDLLFQSGDLTQLPAGIFTD------LAQAQGRIVNISMTAGT 195 Query: 107 PIRLEKL-----VDRGNGGLSSLLPKGKR---------------AATMDISISSAVGGMI 146 +R E L V +G + + KG R + ++ V G+ Sbjct: 196 VLRQEMLKVSPVVQQGQTVMVTSSGKGFRVSAEGKAMTKANEGQVVQVKVASGQVVSGIA 255 Query: 147 KPNDHVDVV 155 + V+VV Sbjct: 256 RQGGQVEVV 264 >gi|311113094|ref|YP_003984316.1| N-acylneuraminate-9-phosphate synthase [Rothia dentocariosa ATCC 17931] gi|310944588|gb|ADP40882.1| N-acylneuraminate-9-phosphate synthase [Rothia dentocariosa ATCC 17931] Length = 747 Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ +A G V+T + + P + ++ +L G ++ + +G Sbjct: 405 LVATRGIAKGEVITEADVTVKS-PGRGLQPNYL---------PQLLGRTIQRDVEEGSFF 454 Query: 109 RLEKL 113 L Sbjct: 455 FEGDL 459 >gi|167617580|ref|ZP_02386211.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia thailandensis Bt4] Length = 212 Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 81 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTMLPLAVITD------AQQAVGATA 134 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 135 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGHGFTISTEGSVLNNAAPGQQVRV 190 >gi|167579483|ref|ZP_02372357.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia thailandensis TXDOH] Length = 209 Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 78 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTMLPLAVITD------AQQAVGATA 131 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 132 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGHGFTISTEGSVLNNAAPGQQVRV 187 >gi|300311348|ref|YP_003775440.1| flagellar basal body P-ring formation protein [Herbaspirillum seropedicae SmR1] gi|300074133|gb|ADJ63532.1| flagellar basal body P-ring formation protein [Herbaspirillum seropedicae SmR1] Length = 254 Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 LI+ LA G ++ + + V + G I + ++ G + + + G P+ Sbjct: 133 LIAAVPLAQGQTISASDISRVRGDMSALPAGVITEES------QVIGRVAGMSLRAGTPL 186 Query: 109 RLEKL 113 R++ + Sbjct: 187 RMDAI 191 >gi|254295425|ref|YP_003061448.1| apolipoprotein N-acyltransferase [Hirschia baltica ATCC 49814] gi|254043956|gb|ACT60751.1| apolipoprotein N-acyltransferase [Hirschia baltica ATCC 49814] Length = 566 Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 9/102 (8%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEE---------VITENPAKFINVLISKGD 54 + I+V+ +F G + RL +E I L+ + Sbjct: 226 RSVPIILVAVIFGSAWGWGSHRLSDATSQSVGPEVRLVDVGVPQSEKFKPEIRKLVLRRY 285 Query: 55 LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 L + T + V +PE V + + + E G Sbjct: 286 LQLTQPDTGDNPRIVIWPEGAVPYALLQYPDALDPVTETLGA 327 >gi|23016878|ref|ZP_00056630.1| COG2089: Sialic acid synthase [Magnetospirillum magnetotacticum MS-1] Length = 346 Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 33/102 (32%), Gaps = 10/102 (9%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71 + A ++ + N +++ +LA G ++ +L Sbjct: 254 GLAAFVAAIRRVEAMLGDQIKRPTATELANMNGIRRGVVAARNLAAGTILDTTMLVCKR- 312 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 G I +P + L G +R + + +P+ + + Sbjct: 313 -----PGGGI----EPEDLDRLAGFTLRRDLAEDEPLSWDDV 345 >gi|312136591|ref|YP_004003928.1| hypothetical protein Mfer_0364 [Methanothermus fervidus DSM 2088] gi|311224310|gb|ADP77166.1| Protein of unknown function DUF515 [Methanothermus fervidus DSM 2088] Length = 425 Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 52/185 (28%), Gaps = 28/185 (15%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL------------ 49 K T + V++ + +A + L + + E +N Sbjct: 78 KRTLIGAAVIACIIIFIAVLGYWFLYYQPYQEALESAKAQKIAEVNAYYKGPLATDPRKQ 137 Query: 50 ---------ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + ++ V+ P W + + + + Sbjct: 138 ALLAQIESATTPEEVLAIDVLGPATQSWRTYQLQQIQAKKDMFNRVMIVYSAGNQSTTLQ 197 Query: 101 PILKGDPIR----LEKLVDRGNGGLSSLLP---KGKRAATMDISISSAVGGMIKPNDHVD 153 I G+ I ++ V + + + S + A + I+ A GG+I VD Sbjct: 198 TIQGGEVIMRVPDAQRFVSQADASVLSNIEIQTPDTVAIPILINRLQAAGGLIGVGSSVD 257 Query: 154 VVMVR 158 + + Sbjct: 258 IYLTN 262 >gi|291483350|dbj|BAI84425.1| hypothetical protein BSNT_01528 [Bacillus subtilis subsp. natto BEST195] Length = 221 Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53 M RL+ I + V A++AG S ++V+T+E I + Sbjct: 12 MNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTNYVKTDEAKVAGDMAAITAPAAGKVSDW 71 Query: 54 DLAVGMVVTPNILE-----WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 DL G V +++ DG I N G + I Sbjct: 72 DLDEGKTVKKGDTVAKIKGEQTVDVKSIMDGTIVKNEVKNGQTVQAGTTIAQTI 125 >gi|322710306|gb|EFZ01881.1| hypothetical protein MAA_03110 [Metarhizium anisopliae ARSEF 23] Length = 386 Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 62/186 (33%), Gaps = 27/186 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL----ISKGDLA 56 MKL R++ + V+ + + L + + P K +V ++K + Sbjct: 24 MKLGRVIAVAVAVYLLGLVYFMRDHLPTLPTPPPTPSPSPPPPKSSDVPSSHKVAKVSML 83 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G P ++++ I + A +++R I G + L+ Sbjct: 84 YG-------------PRNSLYERAIQSHERHAARWGYPMLVLRQDIAAGFWNKPTYLLTA 130 Query: 117 GNGGLSSLLPKGKR--------AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168 LS P +R A ++ I+ + + P D D+ +V S Sbjct: 131 VVNELSK--PADERIEWMMWVDADSIIINPAIPADMFLPPADMPDIHVVASRDHNGLNTG 188 Query: 169 VVLSNI 174 ++ + Sbjct: 189 IIFLRV 194 >gi|319405402|emb|CBI79021.1| Flagella basal body P-ring formation protein FlgA [Bartonella sp. AR 15-3] Length = 152 Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 12/141 (8%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAF-PEENVFDGFIDDVHQPNAMQELDGVL 97 T A I+ L+ + G ++ L F + + ++ D M+++ + Sbjct: 19 TAAYADRISFLVPDKSIYAGQRISDIGLSEKHFFIKSDAASLYVMD------MKQILHKV 72 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + + G PI L L D +A + I+ V ++ DV+ V Sbjct: 73 AKRTLTAGRPISLSSLGDPVLVERGQATKLIFQAHNLQITALGVV---LQSGSSGDVIRV 129 Query: 158 RSLSERKPTVTVVLSN--IRV 176 R+ + VL N +RV Sbjct: 130 RNSDSGRVVTGTVLQNGDVRV 150 >gi|308172888|ref|YP_003919593.1| integral inner membrane protein [Bacillus amyloliquefaciens DSM 7] gi|307605752|emb|CBI42123.1| putative integral inner membrane protein; putative exporter subunit [Bacillus amyloliquefaciens DSM 7] gi|328552528|gb|AEB23020.1| integral inner membrane protein; exporter subunit [Bacillus amyloliquefaciens TA208] Length = 210 Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 27/169 (15%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53 M RL+ I + V A++ G S H+V+T+E I + Sbjct: 1 MNRGRLILTNIIGLIVVLAIIGGGAYYYYQSTHYVKTDEAKVAGDMAAITAPAAGKVTDW 60 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 +L G V+ N + I + +DG +V+ + G + Sbjct: 61 NLDEGKEVSKNDVVAK-----------IKGQQNADVKAIMDGTIVKNQVKNGQMV----- 104 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + + + +I I+ + VDVV+ + Sbjct: 105 ----QAGTTIAQEIDMKHLYITANIKETDIKDIEVGNKVDVVVDGDPNT 149 >gi|116621627|ref|YP_823783.1| 1A family penicillin-binding protein [Candidatus Solibacter usitatus Ellin6076] gi|116224789|gb|ABJ83498.1| penicillin-binding protein, 1A family [Candidatus Solibacter usitatus Ellin6076] Length = 762 Score = 36.2 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 10/132 (7%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R+ + G+ L + H+ + + A N+ + +AVG + Sbjct: 19 RGVRIAAASILGLCLLCLATFIFYYIKLAHIIDQRLAYGPFAGTTNIFSASHRIAVGDPL 78 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 TP V G+ + P L V V G P+ +V+ G G + Sbjct: 79 TPEEFT-----AHLVRSGYTSSPNNPEGWYLLHKNTVEVK-SPGGPL----VVEFGKGKI 128 Query: 122 SSLLPKGKRAAT 133 +++ G+ A + Sbjct: 129 AAISAPGRAAVS 140 >gi|322832560|ref|YP_004212587.1| flagella basal body P-ring formation protein FlgA [Rahnella sp. Y9602] gi|321167761|gb|ADW73460.1| flagella basal body P-ring formation protein FlgA [Rahnella sp. Y9602] Length = 260 Score = 36.2 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 6/70 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 ++ ++ G +T ++ + + I D Q+ + I G Sbjct: 137 TYWVAAKNVPAGAHLTQTDMQQKTGRLDLLPPKTILDS------QQAVNGITLRNISIGQ 190 Query: 107 PIRLEKLVDR 116 P+ L L Sbjct: 191 PLTLSMLRRP 200 >gi|218528667|ref|YP_002419483.1| flagella basal body P-ring formation protein FlgA [Methylobacterium chloromethanicum CM4] gi|218520970|gb|ACK81555.1| flagella basal body P-ring formation protein FlgA [Methylobacterium chloromethanicum CM4] Length = 164 Score = 36.2 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 15/116 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + T + G+V++ + A A + + + + + + + G + Sbjct: 3 RKTFVRGLVLASLAAGSA----------QPIAPAQAVEGMANAELMLPVPTVTIYPGDTI 52 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 ++L A+P + D A + G + R +L G+P+ + + D Sbjct: 53 KESMLRMQAYPATYRARTAVID-----ASAAIAGRVARRMLLPGEPVPVNAVDDPR 103 >gi|262276423|ref|ZP_06054232.1| flagellar basal-body P-ring formation protein FlgA [Grimontia hollisae CIP 101886] gi|262220231|gb|EEY71547.1| flagellar basal-body P-ring formation protein FlgA [Grimontia hollisae CIP 101886] Length = 232 Score = 36.2 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 6/68 (8%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 V+++K L G+ + L L G V+ + G Sbjct: 110 TPVVVAKRPLDRGVTIAKEDLIIQLVDAR------FQRGQTYTDNATLLGSRVKRVVGIG 163 Query: 106 DPIRLEKL 113 +PI + Sbjct: 164 EPISGNDI 171 >gi|134283631|ref|ZP_01770330.1| flagellar basal body P-ring formation protein FlgA [Burkholderia pseudomallei 305] gi|134245040|gb|EBA45135.1| flagellar basal body P-ring formation protein FlgA [Burkholderia pseudomallei 305] Length = 509 Score = 36.2 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 31/116 (26%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 ++ +A G +T L + I D Q+ G Sbjct: 378 QAKLVVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 431 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 432 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 487 >gi|161611269|ref|YP_299813.2| flagellar basal body P-ring biosynthesis protein FlgA [Ralstonia eutropha JMP134] Length = 249 Score = 36.2 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 26/124 (20%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ L G VTP LE + I D ++ G + + G P+ Sbjct: 129 YVAVRALGPGEPVTPADLEVRQGDLSTLPKAVITDPS------QVVGAVTANRVAAGSPM 182 Query: 109 RLEKL------------VDRGNGGLSSLLPKGKRA--------ATMDISISSAVGGMIKP 148 R + L G + +GK + + V G+++ Sbjct: 183 RTDLLKKSIAVRSGQTVTVAVEGDAFQITSEGKVLADAAIGNSVQIRLRNGQVVSGLVRS 242 Query: 149 NDHV 152 D V Sbjct: 243 GDTV 246 >gi|16077965|ref|NP_388781.1| integral inner membrane protein [Bacillus subtilis subsp. subtilis str. 168] gi|81555900|sp|O31593|YHBJ_BACSU RecName: Full=Putative efflux system component yhbJ gi|2633223|emb|CAB12728.1| putative integral inner membrane protein; putative exporter subunit [Bacillus subtilis subsp. subtilis str. 168] Length = 221 Score = 36.2 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53 M RL+ I + V A++AG S ++V+T+E I + Sbjct: 12 MNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTNYVKTDEAKVAGDMAAITAPAAGKVSDW 71 Query: 54 DLAVGMVVTPNILE-----WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 DL G V +++ DG I N G + I Sbjct: 72 DLDEGKTVKKGDTVAKIKGEQTVDVKSIMDGTIVKNEVKNGQTVQAGTTIAQTI 125 >gi|157283957|ref|YP_001468225.1| SAF domain-containing protein [Kineococcus radiotolerans SRS30216] gi|151363099|gb|ABS06101.1| SAF domain protein [Kineococcus radiotolerans SRS30216] Length = 252 Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 48/188 (25%), Gaps = 28/188 (14%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K R M + + A A+ S +VL D+ G + Sbjct: 58 KTNRPMAALAVLIIVGSATAGAVLYSS-------------AGDRHDVLALARDVPAGQKI 104 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T L +G ++ G + +G + + D Sbjct: 105 TAEDLRVAEV------NGSGFSAVIKEHADQVVGSTAISSLPEGALLTNKMYQDDP---- 154 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIRVIAI 179 + G + S +P V V V ++ P ++ + V + Sbjct: 155 --IPEPGNVIVGASLKPGSVPSDA-QPGRRVAVWKVGVVNGNAPVADAEQIVESALVTEV 211 Query: 180 DHNIDSDE 187 ++ Sbjct: 212 STDVAGGN 219 >gi|171184850|ref|YP_001793769.1| periplasmic binding protein [Thermoproteus neutrophilus V24Sta] gi|170934062|gb|ACB39323.1| periplasmic binding protein [Thermoproteus neutrophilus V24Sta] Length = 723 Score = 36.2 bits (82), Expect = 5.1, Method: Composition-based stats. Identities = 6/49 (12%), Positives = 18/49 (36%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL 49 M ++G++++ + A+ A +A ++V+ Sbjct: 1 MNTRVVIGVLLAVILAVFALYLAKPPTGGGVSNATAPPRAAGPSPVSVV 49 >gi|194014413|ref|ZP_03053030.1| YhbJ [Bacillus pumilus ATCC 7061] gi|194013439|gb|EDW23004.1| YhbJ [Bacillus pumilus ATCC 7061] Length = 210 Score = 36.2 bits (82), Expect = 5.2, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 27/169 (15%) Query: 1 MKLTRLMG---IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53 M RL+ I + + A++AG S + V+T+E I + Sbjct: 1 MNRGRLLLTNIIGLIVILAIIAGGAYYYYESTNFVKTDEAKVTGDMYQITAPAAGQIKGW 60 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 D+ G V + + + ++K + +++ Sbjct: 61 DINEGDEVQKDS----------------TVAKVEGETKTNIKSVADGTLVKKEVQNNQQV 104 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + L K + +I I+ D VD+V+ Sbjct: 105 QPGTVLGETIDLSK----LYITANIKETDIKNIEKGDKVDIVVDGDPDT 149 >gi|39996851|ref|NP_952802.1| elongation factor P [Geobacter sulfurreducens PCA] gi|61212653|sp|Q74CC2|EFP2_GEOSL RecName: Full=Elongation factor P 2; Short=EF-P 2 gi|39983739|gb|AAR35129.1| translation elongation factor P [Geobacter sulfurreducens PCA] gi|298505865|gb|ADI84588.1| translation elongation factor P [Geobacter sulfurreducens KN400] Length = 187 Score = 35.9 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 17/180 (9%) Query: 53 GDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK 112 DL G+ +T + ++ E G +++ + GV++ G+ + Sbjct: 5 ADLKKGLKLTLDGAPYLVIAFEFSKPGKGQALYRTKMRNMITGVILDRTYRSGETFEPAR 64 Query: 113 LVDRGNGGL-------SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 L +R L + + + MD + N VD+++ + Sbjct: 65 LEERRMQYLYKEDTHYTFMDNQTFEQVQMDEDAVGDAKNFLIDNLEVDILLFGEKAIG-- 122 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLE------LTP--MQAKALVAAQSVAKLS 217 N+RV+ D + D AT+E + P + + +V + S Sbjct: 123 VTLPNFVNLRVVQTDPWVKGDTSGSDSKPATVETGYILRVPPFIEEGEMIVIDTRSGEYS 182 >gi|110677664|ref|YP_680671.1| flagellar basal body P-ring biosynthesis protein FlgA [Roseobacter denitrificans OCh 114] gi|109453780|gb|ABG29985.1| flagella basal body P-ring formation protein FlgA, putative [Roseobacter denitrificans OCh 114] Length = 140 Score = 35.9 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 12/109 (11%), Positives = 34/109 (31%), Gaps = 10/109 (9%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V++ + +T + + I + + M ++ G R + G Sbjct: 20 EVVVPAKTIRANATITASDITLKP----------IQNENAYTLMADVVGQEARTTLYAGR 69 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 PI + + + ++ +++ + I D V ++ Sbjct: 70 PILFDDIGPPAIVSRNQIVLLSYQSSGLKILTEGRALQRGGVGDRVRIM 118 >gi|71906387|ref|YP_283974.1| flagellar basal body P-ring biosynthesis protein FlgA [Dechloromonas aromatica RCB] gi|71846008|gb|AAZ45504.1| flagellar protein FlgA [Dechloromonas aromatica RCB] Length = 225 Score = 35.9 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 6/78 (7%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + A N + + LA G +V P + ++ + G + D G Sbjct: 93 VPVQIAVTGNYVTTTRPLAAGQLVQPGDIATMSGDLSQLPTGIVTDP------TSAVGKT 146 Query: 98 VRVPILKGDPIRLEKLVD 115 +R + G P+R ++L+ Sbjct: 147 LRNSLGAGQPLRSDQLLP 164 >gi|94312665|ref|YP_585874.1| flagellar basal body P-ring biosynthesis protein FlgA [Cupriavidus metallidurans CH34] gi|93356517|gb|ABF10605.1| flagellar basal body P-ring biosynthesis protein FlgA [Cupriavidus metallidurans CH34] Length = 245 Score = 35.9 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 26/134 (19%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 + + ++ + G +T LE + + D ++DG + Sbjct: 114 QARVSVLTDYYVAARAMGPGETITAADLEVRQGDLAMLPRAVVTDPS------QVDGAVS 167 Query: 99 RVPILKGDPIRLEKLVDR------------GNGGLSSLLPKGKR--------AATMDISI 138 I G P+R + + G L +GK + + Sbjct: 168 ANRIAAGSPMRTDLVRKPIAVKSGQTVNVTVEGDSFQLSSEGKVLTDAATGNMVQVRLRN 227 Query: 139 SSAVGGMIKPNDHV 152 V G+++ D V Sbjct: 228 GQVVSGLVRSGDTV 241 >gi|296130159|ref|YP_003637409.1| hypothetical protein Cfla_2320 [Cellulomonas flavigena DSM 20109] gi|296021974|gb|ADG75210.1| conserved hypothetical protein [Cellulomonas flavigena DSM 20109] Length = 221 Score = 35.9 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 55/206 (26%), Gaps = 22/206 (10%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++ + V + + V +++ L G ++ L + DG+ Sbjct: 26 LLVGIALIASSVVLGSWAVTTAQRTVPVYVARDVLVPGAALSSAALVVADVRLADRVDGY 85 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 + G ++ + G+ + + RA + +S Sbjct: 86 LRADEPLPD-----GAVLLRTVGAGELV--------PVAAVGDATDLDVRAVPVALSGP- 131 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID------HNIDSDERVLVGST 194 ++ VD+ T + R +A + D T Sbjct: 132 -APSGLQAGSRVDLWFTPEPPTEGATEPGGDAVPRELAAGLTVAELSSPDGAFASGGART 190 Query: 195 ATLELTPMQAKALVAA-QSVAKLSLV 219 A + + ++ A + LV Sbjct: 191 AHVLVPVDDLPTVLGALAGRGTVDLV 216 >gi|255072065|ref|XP_002499707.1| carbohydrate-binding module family 48 protein [Micromonas sp. RCC299] gi|226514969|gb|ACO60965.1| carbohydrate-binding module family 48 protein [Micromonas sp. RCC299] Length = 590 Score = 35.9 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 7/147 (4%) Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 + +G AA + GM+ D +D+V S P L Sbjct: 198 PVRKAFHACYEQGITAAPLWDEHQQEFVGMLSTGDFIDIVQSLGPSLTAPIGDEELDKAT 257 Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV-AKLSLVLRSIADLNPSSSEDS 234 + ++ ++ V G + + P + LV+ + +L++ + P + Sbjct: 258 IASVREERAAESGVRPGPLVS--VRPEDSLHLVSLTLLQGRLAMA--PVLSYGPQVPRGA 313 Query: 235 DVWDVQEEGKE--IQIIKAGVIVNKDG 259 KE + + G G Sbjct: 314 TPSATPASSKEAGLGDARGGAGTMGAG 340 >gi|167900902|ref|ZP_02488107.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia pseudomallei NCTC 13177] Length = 224 Score = 35.9 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 93 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 146 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 147 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 202 >gi|121533397|ref|ZP_01665225.1| Altronate dehydratase [Thermosinus carboxydivorans Nor1] gi|121307956|gb|EAX48870.1| Altronate dehydratase [Thermosinus carboxydivorans Nor1] Length = 495 Score = 35.9 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 8/113 (7%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV-----LVRVP 101 NV ++ D+ G + + A E++ G + + + Sbjct: 11 NVAVALRDIRQGETLAADNATVTA--REDIPKGHKIALCDLQPGEHVIKYGFPIGHATSS 68 Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G + + L+ A + + G +P+ V V Sbjct: 69 VAAGQWLHSHNVRTNLGEILAYEYKPEPPAVS-PVPCRHTFRGYRRPDGRVGV 120 >gi|302539254|ref|ZP_07291596.1| LOW QUALITY PROTEIN: membrane protein [Streptomyces sp. C] gi|302448149|gb|EFL19965.1| LOW QUALITY PROTEIN: membrane protein [Streptomyces sp. C] Length = 231 Score = 35.9 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 12/102 (11%), Positives = 24/102 (23%), Gaps = 5/102 (4%) Query: 19 AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 A +++ VL D+ G +T + ++ Sbjct: 34 AAAALSTVLAVAAALGAAAAVSAVGDRTKVLAIANDVPAGQPLTDADIIVAEVSADSA-- 91 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + G V + KG + +L G Sbjct: 92 ---LTPMPATDRASVVGKRPAVDLRKGSLLVAGQLQPGTGLG 130 >gi|163840503|ref|YP_001624908.1| ABC transporter ATP-binding and permease protein [Renibacterium salmoninarum ATCC 33209] gi|162953979|gb|ABY23494.1| ABC transporter ATP-binding and permease protein [Renibacterium salmoninarum ATCC 33209] Length = 606 Score = 35.9 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 14/164 (8%) Query: 94 DGVLVRVPILKG-DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 G ++ G P + G + L + +R + + V Sbjct: 405 AGKSTLGRLIAGIHPPTEGTVTVGGVPLVDRPLDELRREVAL-----VTQEHHVFVGSVV 459 Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212 D V + V L+++ +A + VGS A LTP QA+ + A Sbjct: 460 DNVRLGRDDASALEVEKALADVGALAWAQELPEGLETEVGSGA-FALTPAQAQEIALA-- 516 Query: 213 VAKLSLVLRSIADLNP-SSSEDSDVWDVQEEGKEIQIIKAGVIV 255 LVL L ++ D ++ + + + AG V Sbjct: 517 ----RLVLADPHTLVLDEATSLIDPQAARDLERSLNAVLAGRTV 556 >gi|124515527|gb|EAY57037.1| Secretion protein (HlyD) [Leptospirillum rubarum] gi|206601751|gb|EDZ38234.1| Secretion protein (HlyD) [Leptospirillum sp. Group II '5-way CG'] Length = 419 Score = 35.9 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 16/182 (8%), Positives = 52/182 (28%), Gaps = 9/182 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + I ++ V + G A+R + + ++ + + Sbjct: 1 MNGRTFVAISLALVLGMGIGAGAIRWMGQSTGSVPKGGGNMGKNPERKILYWRN-PMNAS 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + + ++ G+ + I P+ + Sbjct: 60 IHADHPMKDNMGMDYIPVYAETSGASGKSVSVNSGIRQTLGIRL-APVERKNFSRTLRTA 118 Query: 121 LSSLLPKGK-RAATMDIS------ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173 + + + + RA + S + G ++ D + + L+ + + L Sbjct: 119 ATVVFDEHRTRAISTRFSGWIRDLDVRSAGDPVRKGDIIAWIYSPELASSETEARIALQA 178 Query: 174 IR 175 ++ Sbjct: 179 LK 180 >gi|145592208|ref|YP_001154210.1| extracellular solute-binding protein [Pyrobaculum arsenaticum DSM 13514] gi|145283976|gb|ABP51558.1| extracellular solute-binding protein, family 3 [Pyrobaculum arsenaticum DSM 13514] Length = 282 Score = 35.9 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL--AVGMV 60 + + VV+ V L+AG + +P + A V + D+ G + Sbjct: 1 MKSTILAVVALVVGLIAGYLVGMYSAPKPTAPATQTSTPAAAQCPVSV---DIIKKRGKL 57 Query: 61 VTPNILEWVAF 71 + W + Sbjct: 58 ILGTDATWPPW 68 >gi|302038298|ref|YP_003798620.1| putative n-acetylneuraminate synthase [Candidatus Nitrospira defluvii] gi|300606362|emb|CBK42695.1| putative N-acetylneuraminate synthase [Candidatus Nitrospira defluvii] Length = 348 Score = 35.9 bits (81), Expect = 5.8, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76 LV G+ A+ Q E A ++S+ + G V+TP ++ WV P Sbjct: 257 LVKGVDAVFRGRGAERQIFPEEREIVAWARESVVSEVAIPRGTVITPTMV-WVKRPSPG- 314 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 G + ++++ G + + I K IR E+L Sbjct: 315 -PGAVAAKD----LKKVIGKVAKTDIPKDSQIRWEQL 346 >gi|126440298|ref|YP_001057318.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia pseudomallei 668] gi|126219791|gb|ABN83297.1| flagellar basal body P-ring formation protein FlgA [Burkholderia pseudomallei 668] Length = 509 Score = 35.9 bits (81), Expect = 6.0, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 378 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 431 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 432 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 487 >gi|291085839|ref|ZP_06354200.2| putative flagellar protein [Citrobacter youngae ATCC 29220] gi|291070006|gb|EFE08115.1| putative flagellar protein [Citrobacter youngae ATCC 29220] Length = 260 Score = 35.9 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + P I V++ K +A V+T + L+ F N +G + + M E G+ Sbjct: 125 VAVRPDVSIPVVMPKSLIARDTVITADDLQLKKFNISNQREGLMTN------MDEAIGLT 178 Query: 98 VRVPILKGDPIRLEKLVDR 116 + + G PI +LV Sbjct: 179 SKRALQPGKPITRSELVLP 197 >gi|217424999|ref|ZP_03456495.1| flagellar basal body P-ring formation protein FlgA [Burkholderia pseudomallei 576] gi|254196807|ref|ZP_04903231.1| flagellar basal body P-ring formation protein FlgA [Burkholderia pseudomallei S13] gi|169653550|gb|EDS86243.1| flagellar basal body P-ring formation protein FlgA [Burkholderia pseudomallei S13] gi|217392019|gb|EEC32045.1| flagellar basal body P-ring formation protein FlgA [Burkholderia pseudomallei 576] Length = 509 Score = 35.9 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 378 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 431 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 432 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 487 >gi|312899115|ref|ZP_07758493.1| translation elongation factor P [Megasphaera micronuciformis F0359] gi|310619782|gb|EFQ03364.1| translation elongation factor P [Megasphaera micronuciformis F0359] Length = 185 Score = 35.9 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 9/157 (5%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +I+ D G+ + + W ++V G + G +V G+ + Sbjct: 1 MITSNDFRPGVTIEIDGQVWQVVEFQHVKPGKGAAFVRAKIKNLETGAVVERTWNAGEKV 60 Query: 109 RLEKL-------VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 + ++ + +G + + ++ + +K +V V+M + Sbjct: 61 QEGRVDRRQMQYLYESDGMYVFMDNESYEQIELNKDALGSAVNFLKEEMNVSVMMFKGKV 120 Query: 162 ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLE 198 V +RV+ D + D ATLE Sbjct: 121 IGIDLPATVE--LRVVETDPGVRGDTATGGSKPATLE 155 >gi|254490346|ref|ZP_05103535.1| efflux transporter, RND family, MFP subunit, putative [Methylophaga thiooxidans DMS010] gi|224464479|gb|EEF80739.1| efflux transporter, RND family, MFP subunit, putative [Methylophaga thiooxydans DMS010] Length = 552 Score = 35.9 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 14/185 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M L ++ + + + AG A + + + A S + G Sbjct: 1 MNLKTIIVFIFVILMMIAAGYAAYQWGMQRGMGMSTMPANTTAAKATKDPSNWSIPEGEE 60 Query: 61 VTPNILEWVAFPEENVFDG-----FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 T +E + D F D P E G P LV Sbjct: 61 ATRRHMEAGLKAGDIDPDTGRQILFYQDPMVPGNKFETPGK---------SPYMDMMLVP 111 Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 G +S + ++ I +G I P D+ NI+ Sbjct: 112 AYKGTDASDSTAEQGGVSIHSRIQQNIGMRIAPVTREDIATTIPAVGAVAWNEREQVNIQ 171 Query: 176 VIAID 180 A+ Sbjct: 172 ARALG 176 >gi|167843903|ref|ZP_02469411.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia pseudomallei B7210] Length = 222 Score = 35.9 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 91 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 144 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 145 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 200 >gi|167822313|ref|ZP_02453784.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia pseudomallei 9] Length = 218 Score = 35.9 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 87 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 140 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 141 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 196 >gi|157959906|ref|YP_001499940.1| SAF domain-containing protein [Shewanella pealeana ATCC 700345] gi|157844906|gb|ABV85405.1| SAF domain protein [Shewanella pealeana ATCC 700345] Length = 254 Score = 35.9 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 6/80 (7%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + V ++ L G ++ +EW + D + + ++ G Sbjct: 121 VRATVEVRAKVPVANRLLRRGEHISLADIEWQEVNLDA------SDRNLVGQLDQIVGRQ 174 Query: 98 VRVPILKGDPIRLEKLVDRG 117 V + + I+ ++L D Sbjct: 175 VVRKLRRHQAIKSQQLDDPQ 194 >gi|321314626|ref|YP_004206913.1| putative exporter subunit [Bacillus subtilis BSn5] gi|320020900|gb|ADV95886.1| putative integral inner membrane protein; putative exporter subunit [Bacillus subtilis BSn5] Length = 210 Score = 35.9 bits (81), Expect = 6.4, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53 M RL+ I + V A++AG S ++V+T+E I + Sbjct: 1 MNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTNYVKTDEAKVAGDMAAITAPAAGKVSDW 60 Query: 54 DLAVGMVVTPNILE-----WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 DL G V +++ DG I N G + I Sbjct: 61 DLDEGKTVKKGDTVAKIKGEQTVDVKSIMDGTIVKNEVKNGQTVQAGTTIAQTI 114 >gi|325111112|ref|YP_004272180.1| flagella basal body P-ring formation protein FlgA [Planctomyces brasiliensis DSM 5305] gi|324971380|gb|ADY62158.1| flagella basal body P-ring formation protein FlgA [Planctomyces brasiliensis DSM 5305] Length = 447 Score = 35.9 bits (81), Expect = 6.4, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 10/169 (5%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++ V + + ++ VL K L G V+ + L+WV Sbjct: 183 LLRFATVDSQGLPVARELRVVLSESPRVLALKRALPRGKVIRADDLQWVE---------A 233 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 QE+ G + P++ + + ++ ++ + Sbjct: 234 EQTAGLFLDPQEVIGTETIRSVRADQPLQQSDVRQLPLVRRNEIVSVSANIGSISVRRYC 293 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189 G V +V ++ L V+ ++ Sbjct: 294 RSLGEASLGQFVTLV-PVDGKDKITARVTGLREAEVLIDGQDLPGASAQ 341 >gi|237810457|ref|YP_002894908.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia pseudomallei MSHR346] gi|237503791|gb|ACQ96109.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia pseudomallei MSHR346] Length = 509 Score = 35.9 bits (81), Expect = 6.5, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 378 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 431 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 432 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 487 >gi|315091591|gb|EFT63567.1| conserved domain protein [Propionibacterium acnes HL110PA4] Length = 144 Score = 35.9 bits (81), Expect = 6.5, Method: Composition-based stats. Identities = 13/134 (9%), Positives = 39/134 (29%), Gaps = 6/134 (4%) Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 + + L G + G + + G + GK + ++ G Sbjct: 12 PADQLDSLVGKRATADLRAGSLLPAGAI-----GPADVVPAPGKSLVGLKLAAGQIPIGD 66 Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAK 205 + + ++ + ++I+ A + + +E+ A Sbjct: 67 LAAGTKLRLIQTSAGGSSTTGQGATNTDIQSWA-ATMASGTKSTEQVTLINVEVDSRDAA 125 Query: 206 ALVAAQSVAKLSLV 219 + S ++++V Sbjct: 126 RIAQLTSQGRIAVV 139 >gi|167736698|ref|ZP_02409472.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia pseudomallei 14] Length = 221 Score = 35.9 bits (81), Expect = 6.7, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 90 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 143 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 144 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 199 >gi|288940403|ref|YP_003442643.1| flagella basal body P-ring formation protein FlgA [Allochromatium vinosum DSM 180] gi|288895775|gb|ADC61611.1| flagella basal body P-ring formation protein FlgA [Allochromatium vinosum DSM 180] Length = 245 Score = 35.9 bits (81), Expect = 6.8, Method: Composition-based stats. Identities = 8/80 (10%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V++ + ++ V+ P+ + + +G+ + ++ G+ Sbjct: 112 VPARIERHLPVVVLERPISRQQVIGPDDIRIERQAVSTLTNGYFTEAS------DVVGLA 165 Query: 98 VRVPILKGDPIRLEKLVDRG 117 R ++ G + + R Sbjct: 166 SRRRLMPGQVLTSAHVTQRR 185 >gi|30248318|ref|NP_840388.1| flagellar basal body P-ring biosynthesis protein FlgA [Nitrosomonas europaea ATCC 19718] gi|30138204|emb|CAD84212.1| putative flagella basal body P-ring formation protein [Nitrosomonas europaea ATCC 19718] Length = 230 Score = 35.9 bits (81), Expect = 6.8, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 6/72 (8%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 V+ + +++G + + + D ++ G + + G Sbjct: 106 TRVVHAAQPVSMGKQLEAQDIVSKEADLVRIPGEVATDPD------QVIGKVATTFLASG 159 Query: 106 DPIRLEKLVDRG 117 PIR +L Sbjct: 160 QPIRTHQLRAPH 171 >gi|126453246|ref|YP_001064560.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia pseudomallei 1106a] gi|242316721|ref|ZP_04815737.1| flagellar basal body P-ring formation protein FlgA [Burkholderia pseudomallei 1106b] gi|126226888|gb|ABN90428.1| flagellar basal body P-ring formation protein FlgA [Burkholderia pseudomallei 1106a] gi|242139960|gb|EES26362.1| flagellar basal body P-ring formation protein FlgA [Burkholderia pseudomallei 1106b] Length = 507 Score = 35.5 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 376 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 429 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 430 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 485 >gi|209964691|ref|YP_002297606.1| flagellar basal body P-ring biosynthesis protein FlgA [Rhodospirillum centenum SW] gi|209958157|gb|ACI98793.1| flagella basal body P-ring formation protein FlgA, putative [Rhodospirillum centenum SW] Length = 326 Score = 35.5 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 6/125 (4%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 + I + V I L G V+ + W+ P E V + D+ + Sbjct: 177 QTIGARAQDMVEVPILNRRLGSGEVIGDQDIAWIKVPRERVSADVVTDLENLVGLAARRT 236 Query: 96 VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + P+ D + L P A T+ + G + + V +V Sbjct: 237 LAANQPVRGRDVRTPVVVARGALVTLLLQTP----AMTLTAQGKALADGGL--GESVRIV 290 Query: 156 MVRSL 160 S Sbjct: 291 NTTSN 295 >gi|40388707|gb|AAR85531.1| polyketide synthase [Peyronellaea zeae-maydis] Length = 2530 Score = 35.5 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 22/162 (13%) Query: 41 NPAKFINVLISKGDLA-----VGMVVTPNILEWVAFPEENVF---DGFIDDVHQPNAMQE 92 P + ++V ++ GD+ G+ ++ P E++ G + V Sbjct: 1839 APDERVSVELAAGDIEVEVQAAGINFKDVMMAMGQIPIEDLGLECSGMVTSVGSQVQCFA 1898 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK---RAATMDISISSA-----VGG 144 + +V + G ++ + L+ +P AA + I+ +A G Sbjct: 1899 VGDRVVT--MGPGSFCTRLRV----DARLAYRIPDSMSWETAAALPITHVTAYHAVRHLG 1952 Query: 145 MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186 I D V V + +++ RV+ + D Sbjct: 1953 RIVRGDTVLVHAAAGGLGQALVELSIMAGARVLVTVGSADKK 1994 >gi|27380940|ref|NP_772469.1| flagellar basal body P-ring biosynthesis protein FlgA [Bradyrhizobium japonicum USDA 110] gi|27354106|dbj|BAC51094.1| blr5829 [Bradyrhizobium japonicum USDA 110] Length = 382 Score = 35.5 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 10/168 (5%) Query: 30 HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNA 89 + T+ T + + V + D+ ++ + + P+ V Sbjct: 178 NPAPTKLRFTGTAIETVEVAVLTRDIDRADLLKSSDVALERRPKAEVTGEAASR------ 231 Query: 90 MQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 G+ +R P+ G PIR+ +V + + G I+ Sbjct: 232 -DRTIGMQLRRPMRAGTPIRVADIVKPD---FVQRDQNVTIIYQVPGLYLTTRGKAIESG 287 Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATL 197 D V V +L ++ VV ++ + V T++L Sbjct: 288 AEGDTVSVLNLQSKRTLTGVVTGRGQITVQGASQSPPMAPAVEQTSSL 335 >gi|82702447|ref|YP_412013.1| flageller protein FlgA [Nitrosospira multiformis ATCC 25196] gi|82410512|gb|ABB74621.1| flagellar protein FlgA [Nitrosospira multiformis ATCC 25196] Length = 248 Score = 35.5 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 26/128 (20%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 L+S L G V+ + L + G + D + + G + + G Sbjct: 125 EYLVSTRPLRQGQVIDASDLTSRKGDLTQLPPGIVTDWN------QAIGRTLGGNLPFGS 178 Query: 107 PIRLEKL--------------------VDRGNGGLSSLLPKGKRAATMDISISSAVGGMI 146 P+R + L G + + T+ + + V G+ Sbjct: 179 PLRQDMLRAQTAVIQNQTVKLVSSGRGFSVSAEGKALTHATEGQPVTVRSASGAVVSGIA 238 Query: 147 KPNDHVDV 154 + V+V Sbjct: 239 RAGAIVEV 246 >gi|331671800|ref|ZP_08372596.1| SAF domain protein [Escherichia coli TA280] gi|331070789|gb|EGI42148.1| SAF domain protein [Escherichia coli TA280] Length = 252 Score = 35.5 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 9/142 (6%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + P + V+++K +A +T N +E + + D + G Sbjct: 117 VAVRPDVLVPVVMAKSVVARDTPLTANDVELKPYNVSAQRRNVLMDPD------DAIGFS 170 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + + G PI E+LV + ++A + S+ + + V V Sbjct: 171 SKHALQPGRPITKEELVSPVLVERDQPVMIVYQSAGITASMPGVALKNGRKGEMVKV--- 227 Query: 158 RSLSERKPTVTVVLSNIRVIAI 179 R+ S ++ +V + V + Sbjct: 228 RNASSQRVISAMVAESGVVTTV 249 >gi|218546639|gb|ACK98965.1| flp pilus assembly protein FlpB [Aeromonas hydrophila] Length = 90 Score = 35.5 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 15/48 (31%) Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 + + A+ VL++ + G + P L W P Sbjct: 30 TAVPPGEQAPEPAASARLAQVLVAAHRVQAGAFIHPEDLVWQTLPAAE 77 >gi|221308740|ref|ZP_03590587.1| hypothetical protein Bsubs1_04988 [Bacillus subtilis subsp. subtilis str. 168] gi|221313062|ref|ZP_03594867.1| hypothetical protein BsubsN3_04929 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317988|ref|ZP_03599282.1| hypothetical protein BsubsJ_04873 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322262|ref|ZP_03603556.1| hypothetical protein BsubsS_04974 [Bacillus subtilis subsp. subtilis str. SMY] Length = 210 Score = 35.5 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 12/114 (10%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53 M RL+ I + V A++AG S ++V+T+E I + Sbjct: 1 MNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTNYVKTDEAKVAGDMAAITAPAAGKVSDW 60 Query: 54 DLAVGMVVTPNILE-----WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 DL G V +++ DG I N G + I Sbjct: 61 DLDEGKTVKKGDTVAKIKGEQTVDVKSIMDGTIVKNEVKNGQTVQAGTTIAQTI 114 >gi|161723214|ref|YP_106896.2| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia pseudomallei K96243] Length = 254 Score = 35.5 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 123 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 176 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 177 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 232 >gi|116694215|ref|YP_728426.1| flagellar basal body P-ring biosynthesis protein FlgA [Ralstonia eutropha H16] gi|113528714|emb|CAJ95061.1| flagellar basal body P ring formation protein [Ralstonia eutropha H16] Length = 263 Score = 35.5 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 37/134 (27%), Gaps = 26/134 (19%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 + + ++ L G V +E + I D +L G + Sbjct: 133 QARVSVLTDYYVAARALGPGEPVGQADIEVRQGDLGTLPRAVITDPA------QLAGAVT 186 Query: 99 RVPILKGDPIRLEKL------------VDRGNGGLSSLLPKGKRA--------ATMDISI 138 I G PIR + L G + +GK + + Sbjct: 187 ANRIAAGSPIRSDLLRKAIAVRQGQTVTVAVEGDAFQITSEGKVLADAATGNTVQVRLRS 246 Query: 139 SSAVGGMIKPNDHV 152 V G+++ D V Sbjct: 247 GQVVNGLVRSGDTV 260 >gi|169786397|ref|XP_001827659.1| oxidoreductase [Aspergillus oryzae RIB40] gi|238507409|ref|XP_002384906.1| oxidoreductase, putative [Aspergillus flavus NRRL3357] gi|83776407|dbj|BAE66526.1| unnamed protein product [Aspergillus oryzae] gi|220689619|gb|EED45970.1| oxidoreductase, putative [Aspergillus flavus NRRL3357] Length = 295 Score = 35.5 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 40/135 (29%), Gaps = 9/135 (6%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI-NVLISKGDLAVGMVVTPNILE 67 I + G+ A+ + A L + T + ++ G V N L Sbjct: 5 IGIFGLGAMGTALAAKYLEHGYKTSVWNRTTAKAIPLVEQGAKLASTISEG--VNANDLI 62 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127 + V + + D Q + + + G P + KL D + + Sbjct: 63 IICLLNNQVVEDALRDALQTLPSKTIV------NLTNGTPNQARKLADFVTSHGARYIHG 116 Query: 128 GKRAATMDISISSAV 142 G A I AV Sbjct: 117 GIMAVPTMIGSPHAV 131 >gi|294084427|ref|YP_003551185.1| SAF domain-containing protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664000|gb|ADE39101.1| SAF domain protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 295 Score = 35.5 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 11/101 (10%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 + V+ + G ++TP + ++ V F D ++ G Sbjct: 159 TKPNKQMETARVVSLTRSMTRGDIITPEDVAFIDVSMREVVGVFFDH-------DDVVGR 211 Query: 97 LVRVPILKGDPIRLEKL----VDRGNGGLSSLLPKGKRAAT 133 ++ I P+ +L + + ++ + G A + Sbjct: 212 RLKTSISARKPVFARQLHPYWMVEKDQEVTLVNRAGAVAVS 252 >gi|270284475|ref|ZP_05966188.2| putative hemagglutinin-related protein [Bifidobacterium gallicum DSM 20093] gi|270276969|gb|EFA22823.1| putative hemagglutinin-related protein [Bifidobacterium gallicum DSM 20093] Length = 257 Score = 35.5 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 9/104 (8%), Positives = 33/104 (31%), Gaps = 9/104 (8%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 + ++ ++ V++++ + G V+ +++ FP Sbjct: 6 ALCVGVALLVYVVLGAVMGLHA---------TRQVVVARHTIERGSVIGATDVQYQQFPA 56 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 + + +Q + + + I G + L+ + + Sbjct: 57 TDSAGSTTPWADAADDLQLVSNHIAQFTITAGSVVFLDMVAQQP 100 >gi|167917159|ref|ZP_02504250.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia pseudomallei BCC215] Length = 232 Score = 35.5 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 101 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 154 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 155 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 210 >gi|167892405|ref|ZP_02479807.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia pseudomallei 7894] Length = 220 Score = 35.5 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 89 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 142 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 143 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 198 >gi|170682474|ref|YP_001742369.1| lateral flagellar P-ring addition protein LfgA [Escherichia coli SMS-3-5] gi|170520192|gb|ACB18370.1| lateral flagellar P-ring addition protein LfgA [Escherichia coli SMS-3-5] Length = 245 Score = 35.5 bits (80), Expect = 7.7, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 6/79 (7%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + P + V+++K +A +T N +E + + + G+ Sbjct: 110 VAVRPDVLVPVVMAKSLVARDTPLTANDVELKPYNVSA------QRRDVLMELDDAIGLS 163 Query: 98 VRVPILKGDPIRLEKLVDR 116 + + G PI E+LV Sbjct: 164 SKHALQPGRPITKEELVSP 182 >gi|52427983|gb|AAU48576.1| flagella basal body P-ring formation protein FlgA [Burkholderia mallei ATCC 23344] Length = 251 Score = 35.5 bits (80), Expect = 7.7, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 120 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 173 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 174 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 229 >gi|314929114|gb|EFS92945.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1] Length = 157 Score = 35.5 bits (80), Expect = 7.8, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 48/172 (27%), Gaps = 16/172 (9%) Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 + G +V + + + + + ++ G V + G + Sbjct: 2 TRAVGQGEIVRNTDIGLTSVAVDRAVATI-----PADQLDKIVGRHALVDLSSGQLLGSH 56 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171 + + + G+ + ++ + HV VV + + Sbjct: 57 SVGE-------LRVAPGRSRVGLRLAAGRLPTVSLPAGSHVTVVETSPDKDTGTVSQLST 109 Query: 172 SNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 + V+A +E+ A L S+ ++++V R Sbjct: 110 VDAVVVAAPKATGDHSSW----LVDVEVDSGDAARLADLASLDRIAVVERGR 157 >gi|196233741|ref|ZP_03132581.1| hypothetical protein CfE428DRAFT_5748 [Chthoniobacter flavus Ellin428] gi|196222255|gb|EDY16785.1| hypothetical protein CfE428DRAFT_5748 [Chthoniobacter flavus Ellin428] Length = 427 Score = 35.5 bits (80), Expect = 7.8, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 44/176 (25%), Gaps = 20/176 (11%) Query: 54 DLAVGMVVTPNILEWVAFPEE-----NVFDGFIDDVHQPNAMQELDGVLVRVPILKGD-- 106 D+ +G +TP V ++ + G I + G IL G+ Sbjct: 145 DVQLGKKLTPEEAAKVDLTKDGFRWYALPPGEITKPEIVLDKG-VSGFYEARVILSGEKH 203 Query: 107 ---PIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS---SAVGGMIKPNDHVDVVMVRSL 160 + + + + + + + + + Sbjct: 204 MGGVPVQLTVTGPNDSATVYTVTDTTARLPLRETDDGEYTVTATELLTG------LTETA 257 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 T V +V + + S T+ LTP Q A V L Sbjct: 258 KVTNHAPTTVTPRAQVQVREQAVVSKFASRKKVPLTIALTPEQEADKALAAQVQAL 313 >gi|157371211|ref|YP_001479200.1| SAF domain-containing protein [Serratia proteamaculans 568] gi|157322975|gb|ABV42072.1| SAF domain protein [Serratia proteamaculans 568] Length = 217 Score = 35.5 bits (80), Expect = 7.8, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 6/87 (6%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 +S Q I L+S ++ G +T ++ + + + + Sbjct: 74 ISARCGQERRFIQTQVQVTGKYLVSARGISAGSKLTAADIKLKTGRLDTLPPRTLTE--- 130 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKL 113 + G + I G P+ L L Sbjct: 131 ---AGKALGAVSLRNISPGQPLNLAML 154 >gi|67641534|ref|ZP_00440311.1| flagella basal body P-ring formation protein FlgA [Burkholderia mallei GB8 horse 4] gi|121598829|ref|YP_994286.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia mallei SAVP1] gi|124385761|ref|YP_001028065.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia mallei NCTC 10229] gi|161579515|ref|YP_104793.2| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia mallei ATCC 23344] gi|167001531|ref|ZP_02267326.1| flagella basal body P-ring formation protein FlgA [Burkholderia mallei PRL-20] gi|121227639|gb|ABM50157.1| flagella basal body P-ring formation protein FlgA [Burkholderia mallei SAVP1] gi|238522484|gb|EEP85928.1| flagella basal body P-ring formation protein FlgA [Burkholderia mallei GB8 horse 4] gi|243062733|gb|EES44919.1| flagella basal body P-ring formation protein FlgA [Burkholderia mallei PRL-20] Length = 254 Score = 35.5 bits (80), Expect = 7.9, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 123 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 176 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 177 LTRVAAGLPLRQDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 232 >gi|297560192|ref|YP_003679166.1| SAF domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844640|gb|ADH66660.1| SAF domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 223 Score = 35.5 bits (80), Expect = 8.0, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 25/188 (13%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R +V++ G+ + + + VL++ DL G VVT Sbjct: 28 PRRWRWLVLALGMMTAGGLTGVVALEQMDDRQG------------VLVADTDLPAGHVVT 75 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L +V DG + ++ G + VP+ +G + L G Sbjct: 76 AEDLRVARI---SVADGV--SFVGADRLEATVGQTLTVPVTEGGLLPEAAL------GTE 124 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 + P+ RA I P V VV+ V V + + Sbjct: 125 AAFPERDRAVLGVALRVGRFPASIGPGAAVSVVVHPEEGATGGGVE--AYRALVRDVQPS 182 Query: 183 IDSDERVL 190 D V Sbjct: 183 AAEDGSVE 190 >gi|261821149|ref|YP_003259255.1| flagellar basal body P-ring biosynthesis protein FlgA [Pectobacterium wasabiae WPP163] gi|261605162|gb|ACX87648.1| flagella basal body P-ring formation protein FlgA [Pectobacterium wasabiae WPP163] Length = 222 Score = 35.5 bits (80), Expect = 8.0, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 6/87 (6%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 +S Q I N + S + G +T N + + + + Sbjct: 79 LSVRCEQQRRFIQTEVQVTGNYVTSSRPINRGTTLTENDIGLTKGRLDLLP------LRP 132 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKL 113 +Q G ++ + G I + Sbjct: 133 ILTLQGAQGAVLLRDLTPGQVITASMI 159 >gi|254295810|ref|ZP_04963267.1| flagellar basal body P-ring formation protein FlgA [Burkholderia pseudomallei 406e] gi|157806317|gb|EDO83487.1| flagellar basal body P-ring formation protein FlgA [Burkholderia pseudomallei 406e] Length = 495 Score = 35.5 bits (80), Expect = 8.1, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 364 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 417 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + + G P+R + L + + + IS +V P V V Sbjct: 418 LMRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 473 >gi|323975934|gb|EGB71028.1| flagella basal body P-ring formation protein FlgA [Escherichia coli TW10509] Length = 252 Score = 35.5 bits (80), Expect = 8.2, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 9/142 (6%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + P + V+++K +A +T N +E + + E G+ Sbjct: 117 VAVRPDVLVPVVMAKSLVARDTPLTANDVELKPYNVSA------QRRDVLMDLNEAIGLS 170 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + + G P+ E+LV + ++A + S+ + + V V Sbjct: 171 SKHALQPGRPLTKEELVSPVLIERDQPVMIVYQSAGITASMPGVALKNGRKGEMVKV--- 227 Query: 158 RSLSERKPTVTVVLSNIRVIAI 179 R+ S ++ +V + V + Sbjct: 228 RNASSQRVISAIVAESGVVTTV 249 >gi|257055354|ref|YP_003133186.1| xanthine dehydrogenase, molybdenum binding subunit apoprotein [Saccharomonospora viridis DSM 43017] gi|256585226|gb|ACU96359.1| xanthine dehydrogenase, molybdenum binding subunit apoprotein [Saccharomonospora viridis DSM 43017] Length = 813 Score = 35.5 bits (80), Expect = 8.2, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 55/196 (28%), Gaps = 21/196 (10%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 P + + I V++++ A + +E+ P + + D Sbjct: 96 PRRPILAQGKVNYAGEGIAVVVARSPEAAEDALAEIDVEYDELPVVLGLENALADDAPLV 155 Query: 89 AMQELDGVLVRVPILKGD---------PIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139 + I ++V R L+P ++ + + Sbjct: 156 HEDLGTNRNAVWTFDSAEAGSGDDVEQAISGSEVVLRRRFRQQRLIPAFMEPRSVVVDPT 215 Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLEL 199 +A M ++ S + RVIA D + L + Sbjct: 216 AAQLTMWSATQVPHILKTMSALTLGIPEHQL----RVIAPDVGGGFGGK--------LAV 263 Query: 200 TPMQAKALVAAQSVAK 215 P + AL+ AQ + K Sbjct: 264 IPEEFIALLVAQRLGK 279 >gi|84496007|ref|ZP_00994861.1| hypothetical protein JNB_00770 [Janibacter sp. HTCC2649] gi|84382775|gb|EAP98656.1| hypothetical protein JNB_00770 [Janibacter sp. HTCC2649] Length = 189 Score = 35.5 bits (80), Expect = 8.2, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 16/181 (8%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + +V+ + + G V+ L V + ++ L G Sbjct: 20 TASSDTRSVVAVRSAVERGAVIGREDLMAVQVGVDPA-----LTPVPAGQVETLVGQRAA 74 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 V + G + +++ + L P+G + + S G + D V VV Sbjct: 75 VDMAAGTLVTRDQVS------ATVLPPRGFSVVGVALPASLLPGEPLVTGDQVRVVATPG 128 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 V V + + D D + ++++ +A L A + +++V Sbjct: 129 AGGEVVDGPPVTIPATV--VGQHPDPDT---GATVVSVQVPESRAAELAARAATGNVAIV 183 Query: 220 L 220 L Sbjct: 184 L 184 >gi|157691640|ref|YP_001486102.1| hypothetical protein BPUM_0858 [Bacillus pumilus SAFR-032] gi|157680398|gb|ABV61542.1| hypothetical protein BPUM_0858 [Bacillus pumilus SAFR-032] Length = 210 Score = 35.5 bits (80), Expect = 8.3, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 51/169 (30%), Gaps = 27/169 (15%) Query: 1 MKLTRLMG---IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG---- 53 M RL+ I + + A++AG S + V+T+E I + Sbjct: 1 MNRGRLLLTNIIGLIVILAIIAGGAYYYYESTNFVKTDEAKVTGDMYQITAPAAGQIKGW 60 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 D+ G V + + + ++K + +++ Sbjct: 61 DINEGDEVQKDS----------------TVAKVEGETKTNIKSVADGTLVKKEVQNNQQV 104 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + L K + +I I+ D VD+V+ S Sbjct: 105 QPGTVLGETIDLSK----LYITANIKETDIKNIEKGDKVDIVVDGDPST 149 >gi|270262405|ref|ZP_06190676.1| SAF domain-containing protein [Serratia odorifera 4Rx13] gi|270043089|gb|EFA16182.1| SAF domain-containing protein [Serratia odorifera 4Rx13] Length = 217 Score = 35.5 bits (80), Expect = 8.4, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 6/65 (9%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L+S +++ G +T ++ + + + + + + G + I G P+ Sbjct: 96 LVSARNISAGSRLTAADVKLKSGRLDTLAPRTLTNADK------AIGAVSLRNISPGQPL 149 Query: 109 RLEKL 113 L Sbjct: 150 TFAML 154 >gi|120554102|ref|YP_958453.1| SAF domain-containing protein [Marinobacter aquaeolei VT8] gi|120323951|gb|ABM18266.1| SAF domain [Marinobacter aquaeolei VT8] Length = 235 Score = 35.5 bits (80), Expect = 8.4, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 6/106 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 LI+ LA G +TP+++ + G + + + G+++R P+ G Sbjct: 111 PALIAARPLARGERLTPDLVTVNSVQINASRRGVLTR------KESVSGMMMRRPVNAGT 164 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 + + L + R+ + +S + V Sbjct: 165 VMTPDLLEAPNAIERGDHVIITARSGSFSVSSRGKALASAGVGEQV 210 >gi|291442510|ref|ZP_06581900.1| SAF domain-containing protein [Streptomyces ghanaensis ATCC 14672] gi|291345405|gb|EFE72361.1| SAF domain-containing protein [Streptomyces ghanaensis ATCC 14672] Length = 223 Score = 35.5 bits (80), Expect = 8.6, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 28/226 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + ++ + ++ + A AG+ + L + V+ + G V+ Sbjct: 21 RRPGVIALSLALIAAGGAGVAVLLLQVGNRTPVVTVVRDVQV--------------GQVL 66 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T L + + + ++ + G V + G + ++ Sbjct: 67 TEQDLGEASVALDPA-----VKAVPADDLKSVVGKRAAVELKPGSLLSPSQVTKD----- 116 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 SL+ G++ + + + P V +V V + S+ I Sbjct: 117 -SLVKPGEQLVPIGLKPDQVPATALVPGQKVQLVYVPAQGATSVGDDGKQSDSAQETIAG 175 Query: 182 NIDSDERVLVGSTAT---LELTPMQAKALVAAQSVAKLSLVLRSIA 224 + + + G+ + A S L LVL + Sbjct: 176 RVVKASKAVPGTGIVVVDVATAASDGPKAAAWVSAGALRLVLDAPD 221 >gi|313835136|gb|EFS72850.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2] gi|314970941|gb|EFT15039.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3] Length = 157 Score = 35.5 bits (80), Expect = 8.7, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 48/172 (27%), Gaps = 16/172 (9%) Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 + G VV + + + + + ++ G V + G + Sbjct: 2 TRAVGQGEVVRNTDIGLTSVAVDRAVATI-----PADQLDKIVGRHALVDLSSGQLLGSH 56 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171 + + + G+ + ++ + HV VV + + Sbjct: 57 SVGE-------LRVAPGRSRVGLRLAAGRLPTVSLPAGSHVTVVETSPDKDTGTVSQLST 109 Query: 172 SNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 + V+A +E+ A L S+ ++++V R Sbjct: 110 VDAVVVAAPKATGDHSSW----LVDVEVDSGDAARLADLASLDRIAVVERGR 157 >gi|254261371|ref|ZP_04952425.1| flagellar basal body P-ring formation protein FlgA [Burkholderia pseudomallei 1710a] gi|76579771|gb|ABA49246.1| flagella basal body P-ring formation protein FlgA, putative [Burkholderia pseudomallei 1710b] gi|254220060|gb|EET09444.1| flagellar basal body P-ring formation protein FlgA [Burkholderia pseudomallei 1710a] Length = 509 Score = 35.5 bits (80), Expect = 8.8, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 378 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 431 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + + G P+R + L + + + IS +V P V V Sbjct: 432 LMRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 487 >gi|110681322|ref|YP_684329.1| NeuB family protein [Roseobacter denitrificans OCh 114] gi|109457438|gb|ABG33643.1| NeuB family protein [Roseobacter denitrificans OCh 114] Length = 340 Score = 35.1 bits (79), Expect = 8.9, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 10/94 (10%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 + R + + +++ L G +T N L + Sbjct: 257 LAVYRDLYGSAERDISGEATAIKNARRRVVAARPLTAGTTLTENDLIALR---------- 306 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 DD + + G + + G P++ L Sbjct: 307 SDDGIEIAHWDRVVGRSLAREVAGGTPLQWHDLS 340 >gi|206558964|ref|YP_002229724.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia cenocepacia J2315] gi|198035001|emb|CAR50873.1| putative flagellar basal body P-ring formation protein FlgA [Burkholderia cenocepacia J2315] Length = 403 Score = 35.1 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G ++ L + I D + G Sbjct: 272 QAKVAVQATYYVAARQIAPGEPLSAADLVARDGDLTVLPLAVITDPA------QAIGATA 325 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 I G P+R + L + + IS +V P V V Sbjct: 326 LARISAGLPLRQDMLKSAASVSAGQTVRVVAAGPGFTISAEGSVLANAAPGQSVRV 381 >gi|167813796|ref|ZP_02445476.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia pseudomallei 91] Length = 211 Score = 35.1 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D Q+ G Sbjct: 80 QAKLAVQATYYVAARQIAPGETLTAADLVARDGDLTLLPLAVITD------AQQAVGATA 133 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + G P+R + L + + + IS +V P V V Sbjct: 134 LTRVAAGLPLRRDLLKSAASVSIGQTVRVVASGQGFTISAEGSVLNNAAPGQQVRV 189 >gi|158424260|ref|YP_001525552.1| galactarate dehydratase [Azorhizobium caulinodans ORS 571] gi|158331149|dbj|BAF88634.1| galactarate dehydratase [Azorhizobium caulinodans ORS 571] Length = 520 Score = 35.1 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 2/113 (1%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN-VFDGFID 82 M P V+T I + + + ++++ L G + P+ + V I Sbjct: 8 MTYQGPAGVETPRTIKVHESDNVAIVVNSFGLKPGTDLPDGTRLVEFVPQGHKVALTDIA 67 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD 135 D E+ G I +G + ++ LS+L + A + Sbjct: 68 DGAPILRYGEVIGR-AIGDIPRGAWVEESRVAMPVPPDLSALEKATRVPAPLP 119 >gi|24374764|ref|NP_718807.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella oneidensis MR-1] gi|24349430|gb|AAN56251.1|AE015762_8 flagellar basal-body P-ring formation protein FlgA, putative [Shewanella oneidensis MR-1] Length = 235 Score = 35.1 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 20/128 (15%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ LA G +++P +E + ++ Q + + +L GV V+ + K + Sbjct: 114 PVVVATEPLAPGELISPTQVEIRYVDQNSL------RGMQFSDINQLSGVRVKRRVAKNN 167 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS----AVGGMIKPNDHVDVVMVRSLSE 162 PI L A ++ + S+ VG ++ + D + V++ S Sbjct: 168 PIFANNLCFVCKND----------AVSIYVRSSNFVLKTVGEALQDGNIGDQIRVKNSSS 217 Query: 163 RKPTVTVV 170 K V Sbjct: 218 NKELDATV 225 >gi|264676566|ref|YP_003276472.1| flagellar protein FlgA [Comamonas testosteroni CNB-2] gi|299531290|ref|ZP_07044700.1| SAF domain-containing protein [Comamonas testosteroni S44] gi|262207078|gb|ACY31176.1| flagellar protein FlgA [Comamonas testosteroni CNB-2] gi|298720697|gb|EFI61644.1| SAF domain-containing protein [Comamonas testosteroni S44] Length = 252 Score = 35.1 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 10/72 (13%) Query: 47 NVLISKGDLAVGMVVTPNI--LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 +++G++ G ++ V + E++ Q+ G++ P+ Sbjct: 130 PAWVAQGNIPAGKTLSAEDAAPAEVDWAEDSAP--------VFANAQDFIGMVAARPLTS 181 Query: 105 GDPIRLEKLVDR 116 G +R + Sbjct: 182 GQALRQNMVRPP 193 >gi|310640541|ref|YP_003945299.1| aldo/keto reductase family oxidoreductase [Paenibacillus polymyxa SC2] gi|309245491|gb|ADO55058.1| Aldo/keto reductase family oxidoreductase [Paenibacillus polymyxa SC2] Length = 287 Score = 35.1 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 7/105 (6%) Query: 113 LVDRGNGGLSSLLPKGKR--AATMDISISSAVGGMIKPN--DH---VDVVMVRSLSERKP 165 L + G+ L R + + A GG ++ DH VD+ ++ + Sbjct: 170 LYHAASRGIEYDLLPWSRTHGVPVMVYCPIAQGGRLRRGLLDHPVMVDIAASHGVTPSQI 229 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210 + V+ + V AI + + A+++LTP Q + + A Sbjct: 230 ALAWVIRDGDVWAIPKAVQESHVRENAAAASIQLTPEQLQQIDEA 274 >gi|118581420|ref|YP_902670.1| LolC/E family lipoprotein releasing system, transmembrane protein [Pelobacter propionicus DSM 2379] gi|118504130|gb|ABL00613.1| lipoprotein releasing system, transmembrane protein, LolC/E family [Pelobacter propionicus DSM 2379] Length = 420 Score = 35.1 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 4/159 (2%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K T + I + + G++A+ +V EE + E ++ + Sbjct: 17 KSTFISIISLISTAGVSLGVMALIVVLAVMTGFEEDLKEKILGTNAHVVVIRNGLPMDEY 76 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV-PILKGDPIRL--EKLVDRGN 118 + + A P FI + ++ + + GV++R + + LV+ Sbjct: 77 RQVMEKLTAMPGITAATPFIYNQVMLSSGRNVSGVVLRGIDVPSDRLVTRLNASLVEGNT 136 Query: 119 GGLSSLLPKGKRAAT-MDISISSAVGGMIKPNDHVDVVM 156 L + G A + I A ++ D ++VV Sbjct: 137 DNLDPKMGDGAVALPGLLIGKELARNLNLRLGDRINVVS 175 >gi|323191534|gb|EFZ76795.1| lateral flagellar P-ring addition protein [Escherichia coli RN587/1] Length = 245 Score = 35.1 bits (79), Expect = 9.4, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 49/142 (34%), Gaps = 9/142 (6%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + P + V+++K +A +T N +E + + G Sbjct: 110 VAVRPDVLVPVVMAKSLVARDTPLTENDVELKPYNVSA------QRREVLMEPNDAIGFS 163 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + + G PI E+L+ G + ++A + S+ + + V V Sbjct: 164 SKHALQPGRPITKEELISPVLVGRDQPVMIVYQSAGITASMPGVALKNGRKGEMVKV--- 220 Query: 158 RSLSERKPTVTVVLSNIRVIAI 179 R+ S ++ +V + V + Sbjct: 221 RNASSQRVISAMVAESGVVTTV 242 >gi|127512273|ref|YP_001093470.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella loihica PV-4] gi|126637568|gb|ABO23211.1| SAF domain protein [Shewanella loihica PV-4] Length = 235 Score = 35.1 bits (79), Expect = 9.4, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 13/126 (10%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ L G ++ + + + + Q + + G V+ I Sbjct: 114 PVVVANQTLGPGDLIESDQIRLDYVEQSQL------RGQQFDDPVAVTGTRVKRRIPANQ 167 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRA--ATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 P+ L G + ++ RA + + + G + D + V RS Sbjct: 168 PLFASNLCFVCKGDIVAIYA---RADNFVIKTNGEALKDGNL--GDKIQVRNSRSNKTVD 222 Query: 165 PTVTVV 170 VT + Sbjct: 223 AHVTGI 228 >gi|172061976|ref|YP_001809628.1| flagellar basal body P-ring biosynthesis protein FlgA [Burkholderia ambifaria MC40-6] gi|171994493|gb|ACB65412.1| flagella basal body P-ring formation protein FlgA [Burkholderia ambifaria MC40-6] Length = 418 Score = 35.1 bits (79), Expect = 9.4, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 6/116 (5%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 A ++ +A G +T L + I D + G Sbjct: 287 QAKVAVQATYYVAARQIAPGEPLTAADLVARDGDLTVLPLAVITDPA------QAVGATA 340 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 I G P+R + L + + IS + P + V Sbjct: 341 LARISAGLPLRQDMLKSAASVSAGQTVRVVAAGPGFTISAEGSALANAAPGQSIRV 396 >gi|325960145|ref|YP_004291611.1| hypothetical protein Metbo_2426 [Methanobacterium sp. AL-21] gi|325331577|gb|ADZ10639.1| protein of unknown function DUF515 [Methanobacterium sp. AL-21] Length = 496 Score = 35.1 bits (79), Expect = 9.8, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 18/39 (46%) Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 ++ A + IS A GG+I D VDV + S+ Sbjct: 291 IVTPDTVAVPVYISRIQAAGGLINVGDSVDVYQNVNTSQ 329 >gi|226939515|ref|YP_002794588.1| flagella basal body P-ring formation protein FlgA [Laribacter hongkongensis HLHK9] gi|226714441|gb|ACO73579.1| probable flagella basal body P-ring formation protein FlgA [Laribacter hongkongensis HLHK9] Length = 224 Score = 35.1 bits (79), Expect = 9.9, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 6/78 (7%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 ++ L G V+T + G + +++ G + Sbjct: 93 PVRVVSQQGLVTFIRPLEAGAVITAEDIRLEPSRNGRAPAGSFTRI------EDVVGKSL 146 Query: 99 RVPILKGDPIRLEKLVDR 116 + G +R E L Sbjct: 147 GRGVGTGVTLRREMLASP 164 >gi|326772421|ref|ZP_08231705.1| PE-PGRS family protein [Actinomyces viscosus C505] gi|326637053|gb|EGE37955.1| PE-PGRS family protein [Actinomyces viscosus C505] Length = 770 Score = 35.1 bits (79), Expect = 10.0, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 58/205 (28%), Gaps = 10/205 (4%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 + A + +R + +P + ++ + L G + FP + Sbjct: 73 AGIDAALTTLRALGYRLSTPAREALTHPEQAWALVNAAARLTSGSPADEYRPFYPDFPIQ 132 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATM 134 NA G +V V IL + + G+G L+ L R Sbjct: 133 VRSASEAT--LLVNAALHYLGDVVGVRILPDYRPSPREPLPGGDGALTELGLATARDLER 190 Query: 135 DISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST 194 ++ A D D+ +R V N+ V+ + + T Sbjct: 191 IVADLIAQATPFSVQDRADLTALRDFGPEAAPRVAVKENLAVLTV--TFPDLDFSASYRT 248 Query: 195 ATLELTPMQAKALVAAQSVAKLSLV 219 T L A + +SL Sbjct: 249 VT------DVLRLAVAMAGGDVSLA 267 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.307 0.129 0.311 Lambda K H 0.267 0.0401 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,543,654,009 Number of Sequences: 14124377 Number of extensions: 46804083 Number of successful extensions: 401131 Number of sequences better than 10.0: 3193 Number of HSP's better than 10.0 without gapping: 1047 Number of HSP's successfully gapped in prelim test: 2146 Number of HSP's that attempted gapping in prelim test: 396007 Number of HSP's gapped (non-prelim): 4261 length of query: 263 length of database: 4,842,793,630 effective HSP length: 136 effective length of query: 127 effective length of database: 2,921,878,358 effective search space: 371078551466 effective search space used: 371078551466 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 80 (35.5 bits)