RPSBLAST alignment for GI: 254780728 and conserved domain: COG3745

>gnl|CDD|33540 COG3745, CpaB, Flp pilus assembly protein CpaB [Intracellular trafficking and secretion]. Length = 276

 Score =  157 bits (397), Expect = 4e-39
 Identities = 88/259 (33%), Positives = 131/259 (50%), Gaps = 7/259 (2%)

Query: 1   MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60
           M+  RL+ ++V+   A +AG++A  +     V               VL++  DL VG  
Sbjct: 1   MRPKRLIILIVALAAAGLAGVLAASIWLAPAVPATAEPVAPGKPTKPVLVAAVDLPVGQR 60

Query: 61  VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120
           ++ + L W  +P ++V  G I   + P+A+  L G +VRVPI  G+P+   KL   G   
Sbjct: 61  LSADQLRWQPWPADSVPAGAISRENAPDALTGLAGRIVRVPIGAGEPVLPSKLSGPGTRT 120

Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIRV 176
           LSS+LP GKRA  + +     VGG + P D VDV++     +           VL NIRV
Sbjct: 121 LSSVLPPGKRAVAIRVDEVVGVGGFVLPGDRVDVILTVRKDDAGADSSKLAETVLPNIRV 180

Query: 177 IAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234
           +A+D  I   E    +VG TATLE+TP QA+ L  AQ +  LSL LRS+AD     +  +
Sbjct: 181 LAVDQTISEREDGSPVVGRTATLEVTPDQAEKLTLAQQMGTLSLALRSVADAQEPDTGAA 240

Query: 235 DVWDVQEEGK-EIQIIKAG 252
               + +     +Q+IK G
Sbjct: 241 TGLLLGDPVAATVQLIKGG 259