RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780728|ref|YP_003065141.1| pilus assembly protein
[Candidatus Liberibacter asiaticus str. psy62]
         (263 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 61/330 (18%), Positives = 92/330 (27%), Gaps = 155/330 (46%)

Query: 8   GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG--------- 58
           G+V        A  IA          + E    +  K I VL       +G         
Sbjct: 276 GLVT-------AVAIAE-------TDSWESFFVSVRKAITVL-----FFIGVRCYEAYPN 316

Query: 59  MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL-VRVPILKGDPI-RLEKLVDR 116
             + P+ILE      EN           P+ M      L +           +++  V++
Sbjct: 317 TSLPPSILE---DSLENNEG-------VPSPM------LSIS-----NLTQEQVQDYVNK 355

Query: 117 GNGGLSSLLPKGKRAATMDISIS---SA----VGG-------------MIKPNDHVDVVM 156
            N    S LP GK+     + IS    A    V G               K    +D   
Sbjct: 356 TN----SHLPAGKQ-----VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD--- 403

Query: 157 VRS---LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213
            +S    SERK       SN              R L  +      +P  +  LV A  +
Sbjct: 404 -QSRIPFSERKL----KFSN--------------RFLPVA------SPFHSHLLVPASDL 438

Query: 214 AKLSLVLRSIADLNPSS-------SEDSDVWDVQEEGKEI--QIIKA------------- 251
               LV  +++  N          + D    D++     I  +I+               
Sbjct: 439 INKDLVKNNVS-FNAKDIQIPVYDTFDGS--DLRVLSGSISERIVDCIIRLPVKWETTTQ 495

Query: 252 -----------------GVIV--NKDGEGI 262
                            GV+   NKDG G+
Sbjct: 496 FKATHILDFGPGGASGLGVLTHRNKDGTGV 525



 Score = 49.6 bits (118), Expect = 7e-07
 Identities = 39/191 (20%), Positives = 64/191 (33%), Gaps = 81/191 (42%)

Query: 9   IVVSG----VFALV---------AGI-------------IAMRLV---SPHHVQ----TE 35
           +VVSG    ++ L          +G+              + R +   SP H        
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436

Query: 36  EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95
           ++I ++  K  NV  +  D+                P  + FDG   D      ++ L G
Sbjct: 437 DLINKDLVK-NNVSFNAKDIQ--------------IPVYDTFDG--SD------LRVLSG 473

Query: 96  ----VLVRVPILKGDPIRLEK--------LVDRGNGGLSSLLP--------KGKR---AA 132
                +V   I++  P++ E         ++D G GG S L           G R   A 
Sbjct: 474 SISERIVDC-IIR-LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531

Query: 133 TMDISISSAVG 143
           T+DI+     G
Sbjct: 532 TLDINPDDDYG 542



 Score = 31.1 bits (70), Expect = 0.30
 Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 45/186 (24%)

Query: 32   VQTEEV---ITENPAKFINVLISKGDLAVGMVVTP--NILEWVAF---------PEENVF 77
            ++TE++   I E+   +      KG L+      P   ++E  AF         P +  F
Sbjct: 1701 LKTEKIFKEINEHSTSY-TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF 1759

Query: 78   DGFIDDVHQPNAMQELDGV-----LVRVPILKGDPIRLEKLVD---RGNGGLSSLLPKGK 129
             G    + +  A+  L  V     LV V   +G  +++    D   R N G+ ++ P G+
Sbjct: 1760 AG--HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP-GR 1816

Query: 130  RAATMDIS----ISSAVGGM-----------IKPNDHVDVVMVRSLSERKPTVTVVLSNI 174
             AA+        +   VG             ++   +V    +R+L     TVT VL+ I
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD----TVTNVLNFI 1872

Query: 175  RVIAID 180
            ++  ID
Sbjct: 1873 KLQKID 1878


>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2,
           protein structure initiative; 2.05A {Thermotoga
           maritima}
          Length = 278

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 15/151 (9%)

Query: 33  QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92
            T   +     K  NV++ K ++ VG V+    +         ++     D      + E
Sbjct: 130 DTYVTLNMLLRKERNVVVLKRNINVGDVIKEEDVRLEKRNVFEIYGEPFFD------VSE 183

Query: 93  LDGVLVRVPILKGDPIRLEKLVD--RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150
           + G + R  + +G  +  + + D      G          +  +   +     G +    
Sbjct: 184 VVGKISRRYLKEGTVLTADMVKDPPDVVKGQVVPAYVDMGSIKVTTFVEVLENGYL---- 239

Query: 151 HVDVVMVRSLSERKPTVTVVLSN--IRVIAI 179
             + V   ++  RK     V     +R++ +
Sbjct: 240 -GETVRAMNVESRKYVFGRVERGPVLRILEV 269


>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase;
           HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3
           c.1.9.6 PDB: 2fvk_A* 2fvm_A*
          Length = 559

 Score = 30.4 bits (67), Expect = 0.37
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 19/110 (17%)

Query: 36  EVITENPAKFINVLISKGDLAVGM------VVTPNILEWVAFPEENVFDGFIDDVHQ--- 86
           E+   NPAK   +   KG +  G+      +  P+  +     +  +       +     
Sbjct: 421 EIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITN--KLMEHNCD 478

Query: 87  --PNAMQELDGVLVRVPILKGDPIRLEK--LVDRGNGGLSSLLPKGKRAA 132
             P    E+        I+KG  +  E   L +  +G     L +GK   
Sbjct: 479 YTPFEGIEIKNWPRYT-IVKGKIVYKEGEILKENADG---KYLKRGKSFM 524


>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK
           structural genomix research consortium, NYSGXRC, H
           PSI-2; 2.06A {Thermotoga maritima}
          Length = 396

 Score = 29.2 bits (64), Expect = 0.87
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 36  EVITENPAKFINVLISKGDLAVGM-----VVTPNILEWVAFPEENVFDG 79
           +++T NPAK + +    G +  G      V + +  +  +  E    DG
Sbjct: 334 KILTVNPAKILGLEDRIGSIEPGKDADLVVWSGHPFDMKSVVERVYIDG 382


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.0 bits (61), Expect = 2.1
 Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 7/24 (29%)

Query: 211 QSVAKLSLVLRSIADLNPSSSEDS 234
           Q++ KL   L+  AD       DS
Sbjct: 20  QALKKLQASLKLYAD-------DS 36


>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2);
           beta-barrel, structural genomics, PSI-2, protein
           structure initiative; NMR {Archaeoglobus fulgidus}
          Length = 146

 Score = 28.0 bits (62), Expect = 2.4
 Identities = 10/64 (15%), Positives = 21/64 (32%)

Query: 53  GDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK 112
           G++ V           +  P     +  ID       M +  GV   V       + +++
Sbjct: 80  GEVVVFAKKGDVPKGMIFIPMGPYANMVIDPSTDGTGMPQFKGVKGTVEKTDEKVLSVKE 139

Query: 113 LVDR 116
           L++ 
Sbjct: 140 LLEA 143


>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
           topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
           aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A*
          Length = 692

 Score = 28.0 bits (62), Expect = 2.4
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 9/60 (15%)

Query: 169 VVLSNI-RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227
           + L +I  +I+     D+D+  +       +L+  QA+A+        L + LR +  L 
Sbjct: 587 IALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAI--------LDMRLRRLTGLE 638


>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
           initiative, PSI-2, NEW YORK structural genomix research
           consortium, nysgxrc; 2.60A {Bacillus halodurans}
          Length = 448

 Score = 27.9 bits (60), Expect = 2.7
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 16/89 (17%)

Query: 36  EVITENPAKFINVLISKGDLAVGM-----VVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90
           ++++  PAK   +   KG + VG      ++  N   +     +  +         P   
Sbjct: 365 QLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLN-ESYTLNASDLYYRH----PISPYVG 419

Query: 91  QELDGVLVRVPILKGDPIRLEKLVDRGNG 119
           Q   G +    I +G     + +     G
Sbjct: 420 QRFRGKVKHT-ICQG-----KHVYQDHEG 442


>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
            myristol group, icosahedral virus; HET: MYR; 3.30A {Grass
            carp reovirus} PDB: 3k1q_C 3k1q_B
          Length = 1214

 Score = 26.8 bits (58), Expect = 5.9
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 13/101 (12%)

Query: 50   ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH----------QPN--AMQELDGVL 97
            +++G+L +    T      +A      F     +V           +PN    Q +D   
Sbjct: 977  VARGNLYLVQTATNGNWSPMAPVAAPPFVRGGPNVRVVGRFGTIVPRPNGLEPQLIDDGN 1036

Query: 98   VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138
            V   I  GD +    ++          +    +A    + +
Sbjct: 1037 VPRDIA-GDWVYPSDVLQVSVAVFRDYVWPMVKAGRTRVLV 1076


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.135    0.370 

Gapped
Lambda     K      H
   0.267   0.0421    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,191,604
Number of extensions: 101833
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 14
Length of query: 263
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 172
Effective length of database: 3,487,026
Effective search space: 599768472
Effective search space used: 599768472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.1 bits)