BLAST/PSIBLAST alignment of GI: 254780729 and GI: 15887575 at iteration 1
>gi|15887575|ref|NP_353256.1| components of type IV pilus, prepilin peptidase [Agrobacterium tumefaciens str. C58] Length = 170
>gi|15155114|gb|AAK86041.1| components of type IV pilus, prepilin peptidase [Agrobacterium tumefaciens str. C58] Length = 170
 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 112/166 (67%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +A+FLI P CL FAAL+DLFS  IPN +++V+L SF   A   GMD++   L L  G
Sbjct: 1   MIVAAIFLILPLCLCFAALNDLFSMTIPNVITVVLLLSFAFIAPFAGMDFQTFGLSLAGG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           LIVF+ CF  FA N+MGGGD KLLT  AVW+G+  S + FL  V ++GG L+V IL +R 
Sbjct: 61  LIVFLGCFALFAANVMGGGDAKLLTGAAVWYGFNISLVEFLLAVTLVGGALTVGILLLRS 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
            +  I  FG+ +P S ++  KIPYGI I++ GL++Y ++ L K A+
Sbjct: 121 RSQEIMAFGIPIPDSLMVAQKIPYGIGIAIAGLLTYGEAPLVKAAI 166