BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type
IV [Candidatus Liberibacter asiaticus str. psy62]
         (176 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040406|gb|ACT57202.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 176

 Score =  341 bits (875), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL
Sbjct: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI
Sbjct: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
           LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA
Sbjct: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176


>gi|315121893|ref|YP_004062382.1| peptidase A24A prepilin type IV [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495295|gb|ADR51894.1| peptidase A24A prepilin type IV [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 178

 Score =  224 bits (571), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 144/176 (81%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           MKE KMVFS +FL+ PFCL+ A LSDLFS MIPNR+S+V+LGSFLL A  +G+ YE IAL
Sbjct: 1   MKEDKMVFSVIFLVLPFCLISAGLSDLFSTMIPNRISVVLLGSFLLIAPFVGLGYEEIAL 60

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           H+LVGL VFI CF FF+ NIMGGGD KLLT+ ++WFGW  S L FLF+VAI GGIL++ +
Sbjct: 61  HVLVGLFVFIACFFFFSVNIMGGGDAKLLTTASLWFGWNISLLYFLFYVAIFGGILALVV 120

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
           L +R IT +IP+   FVP+SF MKNKIPYG+AIS+GGL+SYPDS+LFK+AL G+S 
Sbjct: 121 LLIREITRYIPLLDKFVPRSFHMKNKIPYGVAISIGGLVSYPDSHLFKIALEGIST 176


>gi|150398539|ref|YP_001329006.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419]
 gi|150030054|gb|ABR62171.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419]
          Length = 170

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/170 (47%), Positives = 114/170 (67%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M  +A+F++ PFCL FAA SDLF+  IPNR+S ++L SF++ + L G+D     LH+   
Sbjct: 1   MTIAAIFVVFPFCLAFAAFSDLFTMTIPNRISAIVLVSFVVISPLAGLDASKACLHVAAA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           ++VF  CFC FA N+MGGGD KLLT++A+WFG+  S + FL +V+  GG+L++ +L +R 
Sbjct: 61  VLVFGACFCLFAVNVMGGGDAKLLTASAIWFGFEASLIDFLLYVSAFGGLLTIAVLLLRS 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
             N I    + VP+  L   KIPYGIAI++GG  +YP S L K+AL   S
Sbjct: 121 QENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMKLALTQFS 170


>gi|15887575|ref|NP_353256.1| components of type IV pilus, prepilin peptidase [Agrobacterium
           tumefaciens str. C58]
 gi|15155114|gb|AAK86041.1| components of type IV pilus, prepilin peptidase [Agrobacterium
           tumefaciens str. C58]
          Length = 170

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 112/166 (67%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +A+FLI P CL FAAL+DLFS  IPN +++V+L SF   A   GMD++   L L  G
Sbjct: 1   MIVAAIFLILPLCLCFAALNDLFSMTIPNVITVVLLLSFAFIAPFAGMDFQTFGLSLAGG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           LIVF+ CF  FA N+MGGGD KLLT  AVW+G+  S + FL  V ++GG L+V IL +R 
Sbjct: 61  LIVFLGCFALFAANVMGGGDAKLLTGAAVWYGFNISLVEFLLAVTLVGGALTVGILLLRS 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
            +  I  FG+ +P S ++  KIPYGI I++ GL++Y ++ L K A+
Sbjct: 121 RSQEIMAFGIPIPDSLMVAQKIPYGIGIAIAGLLTYGEAPLVKAAI 166


>gi|209551757|ref|YP_002283674.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537513|gb|ACI57448.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 170

 Score =  154 bits (388), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 111/170 (65%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +AVF+I P CL  A  SDLF+  IPNRVS++++ SF + A L G+  + I +HL   
Sbjct: 1   MIAAAVFMILPLCLAMAGFSDLFTMTIPNRVSLILIVSFFVLAPLSGLGLQAIGMHLAAA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IVF  CF  FAFN+MGGGD KLL++TA+WFG   S L  +  VAI+GG +++ IL VR 
Sbjct: 61  AIVFSACFALFAFNVMGGGDAKLLSATALWFGLNESLLFLMSDVAIIGGFITLLILMVRA 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
             + I   G+ VP S L+  KIPYGIAI++GG +++P S LF   L  L 
Sbjct: 121 QADTILAIGLPVPNSILIAKKIPYGIAIAIGGFMAFPSSPLFLTTLESLK 170


>gi|222084467|ref|YP_002542996.1| prepilin peptidase protein [Agrobacterium radiobacter K84]
 gi|221721915|gb|ACM25071.1| prepilin peptidase protein [Agrobacterium radiobacter K84]
          Length = 170

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 112/165 (67%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +A  LI P CL  AA+SDL +  IPNRVS+++LG+F++ A  +G+    I +H+   
Sbjct: 1   MLEAATLLIFPLCLSVAAISDLLTMTIPNRVSLILLGAFIVLAPFVGLTLPEIGMHVAGA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IVF  CF  FA N+MGGGD KLL ++A+WFG+ PS L+FL +VA +GG +++ IL +R 
Sbjct: 61  AIVFCACFALFALNVMGGGDAKLLAASALWFGFDPSLLAFLVYVAFIGGAVTIAILMIRS 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
            ++ I   G+ +P S L+  KIPYGIAI++GG +++P S L   A
Sbjct: 121 QSSAIMAMGLPLPNSLLIAKKIPYGIAIAIGGFLAFPSSPLVVAA 165


>gi|241207155|ref|YP_002978251.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861045|gb|ACS58712.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 170

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/170 (50%), Positives = 114/170 (67%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +AVFLI P CL  AA SDLF+  IPNR+S+++  SFL+ A   G+  E+I +HL   
Sbjct: 1   MIAAAVFLILPLCLAMAAFSDLFTMTIPNRISVILTASFLVLAPFSGLGLEMIGMHLAGA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IVF  CF  FAFN+MGGGD KLL++TA+WFG   S L  +  VA +GG++++ IL VR 
Sbjct: 61  AIVFSACFALFAFNVMGGGDAKLLSATALWFGLNESLLFLMTDVAAIGGLITLLILLVRT 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
            +N I   G+ VP S L+  KIPYGIAI++GG +++P S LF  AL  L 
Sbjct: 121 QSNTILAIGLPVPNSVLLAKKIPYGIAIAIGGFMAFPSSPLFLAALESLK 170


>gi|222147184|ref|YP_002548141.1| component of type IV pilus prepilin peptidase protein
           [Agrobacterium vitis S4]
 gi|221734174|gb|ACM35137.1| component of type IV pilus prepilin peptidase protein
           [Agrobacterium vitis S4]
          Length = 172

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/163 (46%), Positives = 105/163 (64%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           LI P CL  AA +DLF   IPN + +V+L  F   A +LG+   L  LHL  GLIVF  C
Sbjct: 8   LIMPLCLALAAFTDLFEMKIPNAIPLVLLIGFAALALVLGLPIGLAGLHLTAGLIVFFGC 67

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
           F  FA N+MGGGD KLLT+ AVW+G+  S + FL  VA+ GG+L++ IL +R   N +  
Sbjct: 68  FTLFAVNVMGGGDAKLLTAAAVWYGFNISLVEFLIEVAMFGGVLTLMILALRSQANTVMA 127

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
            G+ +P+S +++ KIPYGIAI++GG  S+  + +  +AL  +S
Sbjct: 128 LGLRLPRSLIVEKKIPYGIAIAIGGFCSFLSAPVVTLALATVS 170


>gi|116249979|ref|YP_765817.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254627|emb|CAK05701.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 170

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/170 (47%), Positives = 112/170 (65%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +AVF+I P CL  AA SDLF+  IPNR+S+++  SF + A L G+    I +HL   
Sbjct: 1   MIAAAVFVILPLCLAMAAFSDLFTMTIPNRISVILTASFFVLAPLSGLGLAEIGMHLAGA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IVF  CF  FAFN+MGGGD KL+++ A+WFG   S L  +  VA++GG++++ IL VR 
Sbjct: 61  AIVFSACFALFAFNVMGGGDAKLMSAAALWFGLNESLLFLMTDVAMIGGLITLLILLVRG 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
            ++ I   G+ VP S L+  KIPYGIAI++GG +++P S LF  AL  L 
Sbjct: 121 QSDTILAIGLPVPNSVLLAKKIPYGIAIAIGGFMAFPSSPLFLAALESLK 170


>gi|325291661|ref|YP_004277525.1| components of type IV pilus, prepilin peptidase [Agrobacterium sp.
           H13-3]
 gi|325059514|gb|ADY63205.1| components of type IV pilus, prepilin peptidase [Agrobacterium sp.
           H13-3]
          Length = 170

 Score =  138 bits (347), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 111/170 (65%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           MV +A+FLI PFCL FAAL+DLFS  IPNR+++ +L SF++ A   GMD +  A+ +   
Sbjct: 1   MVIAAIFLILPFCLAFAALNDLFSMTIPNRITLFLLLSFIVVAPFSGMDLQTFAMSIAAA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
             VF  CF  FA N MGGGD KLLT+  VW+G+  S + FL  V  +GG+L++ IL +R 
Sbjct: 61  AAVFFACFILFAANAMGGGDAKLLTAVTVWYGFNISLIEFLLAVTFIGGVLTLGILLLRS 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
            +  I   G+ +P S ++  KIPYGI I++ GL++Y ++ L K A+  L+
Sbjct: 121 RSQEILAIGIPIPDSLMVVKKIPYGIGIAIAGLLTYGETPLVKAAIASLT 170


>gi|190889879|ref|YP_001976421.1| prepilin peptidase [Rhizobium etli CIAT 652]
 gi|190695158|gb|ACE89243.1| prepilin peptidase protein [Rhizobium etli CIAT 652]
          Length = 170

 Score =  134 bits (336), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 111/170 (65%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ + VF++ P CL  AA SDLF+  IPNRVS++++ SFL+ A  LG   + I +HL   
Sbjct: 1   MIATGVFVVLPLCLAMAAFSDLFTMTIPNRVSLILIVSFLVLAPFLGFGLQAIGMHLAAA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IV   CF  FAFN+MGGGD KLL++TA+WFG   S    +  VA +GG++++ IL VR 
Sbjct: 61  AIVLAACFALFAFNVMGGGDAKLLSATALWFGLNQSLTLLMADVAAVGGLITLLILLVRT 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
            +N I   G+ +P S L+  KIPYGIAI++GG +++P S +F  AL  L 
Sbjct: 121 QSNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESLK 170


>gi|327194696|gb|EGE61542.1| prepilin peptidase protein [Rhizobium etli CNPAF512]
          Length = 170

 Score =  134 bits (336), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 111/170 (65%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ + VF++ P CL  AA SDLF+  IPNRVS++++ SFL+ A  LG   + I +HL   
Sbjct: 1   MIAAGVFVVLPLCLAMAAFSDLFTMTIPNRVSLILIVSFLVLAPFLGFGLQAIGMHLAAA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IV   CF  FAFN+MGGGD KLL++TA+WFG   S    +  VA +GG++++ IL VR 
Sbjct: 61  AIVLAACFALFAFNVMGGGDAKLLSATALWFGLNQSLTLLMADVAAVGGLITLLILLVRT 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
            +N I   G+ +P S L+  KIPYGIAI++GG +++P S +F  AL  L 
Sbjct: 121 QSNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESLK 170


>gi|227823969|ref|YP_002827942.1| type IV prepilin peptidase CpaA [Sinorhizobium fredii NGR234]
 gi|227342971|gb|ACP27189.1| type IV prepilin peptidase CpaA [Sinorhizobium fredii NGR234]
          Length = 174

 Score =  133 bits (335), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 110/165 (66%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M  + + +I PFCL  AA SDLF+  IPNR+S ++L +F++ A L G     I+LH+   
Sbjct: 1   MTIACILVILPFCLALAAFSDLFTMTIPNRISAILLAAFIVVAPLAGFGMGEISLHIAAA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +VF++CFC FA ++MGGGD KLLT++AVWFG   S + FL +V+I GG+L++ +L +R 
Sbjct: 61  AVVFVVCFCLFAASVMGGGDAKLLTASAVWFGLDASLVDFLVYVSIFGGLLTLAVLLLRR 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
             N I   G+ VP+  L   KIPYGIAI+MGG  +YP S L + A
Sbjct: 121 QENAILASGIPVPQLLLTAKKIPYGIAIAMGGFAAYPSSPLMEAA 165


>gi|86355862|ref|YP_467754.1| prepilin peptidase protein [Rhizobium etli CFN 42]
 gi|86279964|gb|ABC89027.1| prepilin peptidase protein [Rhizobium etli CFN 42]
          Length = 170

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 114/170 (67%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +AVF+I P CL  AA SDLF+  IPNR+S++++ SFL  A   G+  + I  HL  G
Sbjct: 1   MIAAAVFVILPLCLAMAAFSDLFTMTIPNRISLILVVSFLALAPFFGLGLQAIGTHLAAG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IVF  CF  FAFN+MGGGD KLLT+TA+WFG   S L  +  VAI+GG+L++ IL VR 
Sbjct: 61  AIVFAACFALFAFNVMGGGDAKLLTATALWFGLNESLLFLMTDVAIIGGLLTLLILLVRG 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
            +N I   G+ VP S L+  KIPYGIAI++GG +++P S LF  AL  L 
Sbjct: 121 QSNTILAIGLPVPNSLLLAKKIPYGIAIAIGGFMAFPSSPLFIAALESLK 170


>gi|15963892|ref|NP_384245.1| putative pilus assembly transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|15073067|emb|CAC41526.1| Putative pilus assembly transmembrane protein [Sinorhizobium
           meliloti 1021]
          Length = 174

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/173 (43%), Positives = 110/173 (63%)

Query: 3   ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
           E +M+ + + ++ PF L  AALSDL +  IPNRVS+V+L SF   A L G+D   + LH 
Sbjct: 2   ELEMINATILVVFPFSLALAALSDLLTMTIPNRVSLVLLVSFFFVAPLAGLDLAQLGLHT 61

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +   ++F + F  FA N+MGGGD KLLT++A WFG+  S ++FL +V+  GG L++ +L 
Sbjct: 62  VAAGLIFAVSFALFAANVMGGGDAKLLTASAAWFGFNESLVTFLVYVSFFGGFLTLIVLL 121

Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
           +R   N I    + VP+  L   KIPYGIAI++GG  +YP S L ++A   LS
Sbjct: 122 LRSKENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMQLAFAQLS 174


>gi|307315789|ref|ZP_07595303.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C]
 gi|307320424|ref|ZP_07599841.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83]
 gi|306893990|gb|EFN24759.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83]
 gi|306898557|gb|EFN29230.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C]
          Length = 170

 Score =  127 bits (318), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 108/170 (63%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ + + ++ PF L  AALSDL +  IPNRVS+V+L SF   A L G+D   + LH +  
Sbjct: 1   MINATILVVFPFSLALAALSDLLTMTIPNRVSLVLLVSFFFVAPLAGLDLAQLGLHTVAA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            ++F + F  FA N+MGGGD KLLT++A WFG+  S ++FL +V+  GG L++ +L +R 
Sbjct: 61  GLIFAVSFALFAANVMGGGDAKLLTASAAWFGFNESLVTFLVYVSFFGGFLTLIVLLLRS 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
             N I    + VP+  L   KIPYGIAI++GG  +YP S L ++A   LS
Sbjct: 121 KENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMQLAFAQLS 170


>gi|307943143|ref|ZP_07658488.1| peptidase A24A prepilin type IV [Roseibium sp. TrichSKD4]
 gi|307773939|gb|EFO33155.1| peptidase A24A prepilin type IV [Roseibium sp. TrichSKD4]
          Length = 169

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 100/154 (64%), Gaps = 2/154 (1%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           PF ++ AA+SDL +  IPN++SIV+   F L A ++G+ ++ I LHL  G +VF++CFC 
Sbjct: 10  PFLVIRAAVSDLLTMTIPNKISIVLCVLFALYAPIVGLGWQDIGLHLAGGAVVFVVCFCM 69

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FA N MGGGD KLLT+ A+WFGW+   L+FLF  A+ G +L++F++ +R +         
Sbjct: 70  FAMNWMGGGDAKLLTAVALWFGWSADLLNFLFATAVFGMLLTLFLILIRPVLVLPERLAR 129

Query: 136 FVPKSFLM--KNKIPYGIAISMGGLISYPDSYLF 167
               + L+  K  IPYG+AI+ G L+ YP S L+
Sbjct: 130 IEWLTHLLHPKTGIPYGLAIAAGALLVYPTSPLY 163


>gi|90419762|ref|ZP_01227671.1| putative peptidase A24A, prepilin type IV [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335803|gb|EAS49551.1| putative peptidase A24A, prepilin type IV [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 170

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 98/162 (60%), Gaps = 3/162 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           A+ +I PF +++AA SDL S  I NRVSI++  +F + A+  GM    I  HL +GL+  
Sbjct: 5   AILVIFPFAMLYAAASDLVSMTIANRVSILLALAFPVVAYAAGMAPGAIGAHLGIGLVCL 64

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
            +CF  FA   MGGGD KLL +TAVWFG TP  L ++ F +I GG+L++ +LT+R     
Sbjct: 65  TVCFGMFAAGWMGGGDAKLLAATAVWFGPTPMLLEYILFASIYGGLLTIGLLTIRAFLQ- 123

Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
            P+ G+ F+ +    +  IPYGIA+ + GL  Y  S    +A
Sbjct: 124 -PVTGVAFIDRLLERETGIPYGIALGLAGLTVYSGSVWIDIA 164


>gi|315497467|ref|YP_004086271.1| peptidase a24a prepilin type IV [Asticcacaulis excentricus CB 48]
 gi|315415479|gb|ADU12120.1| peptidase A24A prepilin type IV [Asticcacaulis excentricus CB 48]
          Length = 171

 Score =  110 bits (276), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 3/166 (1%)

Query: 6   MVFSAVF-LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
           M+  A+F L+ P CLV+AA+SDL S  IPNR+S+++ G F   A L+G+     A+H+ +
Sbjct: 1   MLIPALFCLVYPACLVWAAVSDLRSMTIPNRLSLILAGVFFPAAVLMGLTPVGFAIHVGI 60

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           GL + +I F  FAF ++GGGD KLL +TA+WF  T   L+FL + A++GG  ++ +L  R
Sbjct: 61  GLGILVIGFAAFAFKVLGGGDAKLLAATALWFH-TDGVLAFLVYTALVGGGFTLLLLLAR 119

Query: 125 MITN-HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
                ++P    ++      K  IPYG+AI  GGL++ P S L+ +
Sbjct: 120 QTLQIYLPTLPQWLQTLLKPKGDIPYGVAICAGGLLAIPYSDLWPL 165


>gi|110636418|ref|YP_676626.1| peptidase A24A, prepilin type IV [Mesorhizobium sp. BNC1]
 gi|110287402|gb|ABG65461.1| peptidase A24A, prepilin type IV [Chelativorans sp. BNC1]
          Length = 173

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 111/177 (62%), Gaps = 11/177 (6%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           MV +A+ +I PFC+ FAA+SD+ S  I NRVSI+++ SF + A L+GM    I +H L+G
Sbjct: 1   MVEAAILVIFPFCMAFAAVSDMISLTIANRVSILLVLSFAVLAPLVGMPVAEIGMHFLLG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR- 124
             V +  F  FA   MGGGD KL+ ++AVWFG+ P  + +L   A+LGG L++ +++ R 
Sbjct: 61  GTVLLATFAVFAIGGMGGGDAKLMAASAVWFGFNPGLMDYLLATALLGGALTLALVSFRR 120

Query: 125 -----MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
                ++ +H+ +   F  +    K+ IPYG+A+ +GGLI +P + L + A+  L+A
Sbjct: 121 SAFSPLVAHHV-LLRHFAEE----KSGIPYGVALGLGGLICFPQTPLMQWAMERLAA 172


>gi|328545281|ref|YP_004305390.1| peptidase A24A, prepilin type IV [polymorphum gilvum SL003B-26A1]
 gi|326415023|gb|ADZ72086.1| Peptidase A24A, prepilin type IV [Polymorphum gilvum SL003B-26A1]
          Length = 170

 Score =  107 bits (267), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 101/173 (58%), Gaps = 8/173 (4%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +A+ ++ P  + FAA SDL +  IPNRVS+++ G+F++ A   GM    IALH + G
Sbjct: 1   MLEAALLVVFPVLVAFAAASDLLTMTIPNRVSLLLAGAFVVLAVATGMSVAEIALHAVAG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
             V  +CF  FA   MGGGD K+ ++  +W G +   ++FL    I G +L++ +L+ R 
Sbjct: 61  GTVLAVCFFLFAMGWMGGGDAKIASAIGLWLGLSSHLVAFLMLTTIYGMVLTIVLLSFRR 120

Query: 126 ITNHIPIFGMFVPKSFLM-----KNKIPYGIAISMGGLISYPDSYLFKVALMG 173
           +  ++P  G    + +++     +  IPYGIAI+   L +YP ++ F +A +G
Sbjct: 121 L-PYLP--GGLGRQEWMLRLHDTRTGIPYGIAIAAAALQTYPTTHWFALAALG 170


>gi|163757625|ref|ZP_02164714.1| putative pilus assembly transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162285127|gb|EDQ35409.1| putative pilus assembly transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 147

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 86/141 (60%), Gaps = 1/141 (0%)

Query: 32  IPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTS 91
           IPNRVSIV+  SF + A L GMD       ++  LIVF +CF  FA N+MGGGD K+L++
Sbjct: 3   IPNRVSIVLGLSFFVVAPLSGMDLATFGWSIVAALIVFAVCFALFAVNVMGGGDAKILSA 62

Query: 92  TAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM-KNKIPYG 150
            A+W+G++   + FL F  I GG+L++ +L +R   N + +  + +P  F   +  IPYG
Sbjct: 63  AALWYGFSSDLVVFLGFTGIYGGLLALVVLMLRANQNILLVSPVPIPMHFFKDRAGIPYG 122

Query: 151 IAISMGGLISYPDSYLFKVAL 171
           +AI      +YPDS +F  A+
Sbjct: 123 VAIGAAAFSTYPDSRIFIEAI 143


>gi|254502136|ref|ZP_05114287.1| peptidase, A24 (type IV prepilin peptidase) family [Labrenzia
           alexandrii DFL-11]
 gi|222438207|gb|EEE44886.1| peptidase, A24 (type IV prepilin peptidase) family [Labrenzia
           alexandrii DFL-11]
          Length = 170

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 100/166 (60%), Gaps = 3/166 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ + V ++ P  + FA  SDL +  I NRVSI+++  F++ A + GM      +H L  
Sbjct: 1   MIEAVVLVLFPMLVAFAGASDLLTMKIGNRVSILLIIGFIVLAAVNGMPVNDWGMHGLGL 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR- 124
           ++VF+ CF FFA   MGGGDVKL++S  +WFG+ P  + FLF VA+LG +L++ ++ +R 
Sbjct: 61  VVVFLPCFAFFAAGWMGGGDVKLISSVGLWFGFGPILIDFLFLVALLGCVLTLSLVVIRS 120

Query: 125 -MITNHIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
            ++    P+ G  +  +    K+ IPYGIAIS   LI YP S  F 
Sbjct: 121 SLVVLPAPLRGQEWALRLHDAKSGIPYGIAISAAALIVYPRSDWFS 166


>gi|209886529|ref|YP_002290386.1| peptidase A24A, prepilin type IV [Oligotropha carboxidovorans OM5]
 gi|209874725|gb|ACI94521.1| peptidase A24A, prepilin type IV [Oligotropha carboxidovorans OM5]
          Length = 174

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 10/166 (6%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P  + FAA+SD+ +  I NRVS++++G F + A L GM+ E I  H   G  V ++ F  
Sbjct: 12  PALMAFAAVSDILTMTISNRVSLLLIGGFFVLAGLTGMNLETIGWHAAAGATVLVVAFTC 71

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FAF  +GGGD K+  S A+WFG+    L +L   +I+GG L++ IL +R      P+   
Sbjct: 72  FAFGWIGGGDAKIAASAALWFGFA-HLLDYLVAASIVGGALTLIILQLR----RWPMPAF 126

Query: 136 FVPKSFLMK-----NKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
              + +L++       IPYG+A++ G ++ YP++   ++A    SA
Sbjct: 127 LTSQDWLVRLHDKATGIPYGVALAAGAMLVYPNTEWVRLAAFATSA 172


>gi|114705459|ref|ZP_01438367.1| type IV prepilin peptidase, cpaA [Fulvimarina pelagi HTCC2506]
 gi|114540244|gb|EAU43364.1| type IV prepilin peptidase, cpaA [Fulvimarina pelagi HTCC2506]
          Length = 169

 Score =  104 bits (259), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 92/157 (58%), Gaps = 4/157 (2%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P C++FAA+SD+ +  IPNR+ +++  +F + A L  M    IA+HL  GL  F++ F  
Sbjct: 11  PLCMIFAAVSDIMTMTIPNRLCLLLALAFPVAALLSNMSTSDIAIHLGFGLAAFLLGFAM 70

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FAF ++GGGD KLL +TA W G   + L +L     LGG++++ I+  R +   +PI G 
Sbjct: 71  FAFGLVGGGDAKLLAATAFWIGPAGA-LPYLLVATGLGGLMAIGIIYARNMA--VPITGY 127

Query: 136 FVPKSFLMKNK-IPYGIAISMGGLISYPDSYLFKVAL 171
                 L +N  +PYG+A+ + GL SY DS     A+
Sbjct: 128 VFADRLLSQNTGVPYGVALGIAGLYSYADSVYLTAAI 164


>gi|300021852|ref|YP_003754463.1| peptidase A24A prepilin type IV [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523673|gb|ADJ22142.1| peptidase A24A prepilin type IV [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 169

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 93/156 (59%), Gaps = 4/156 (2%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P  + FAA +DLF+  IPN +S+ ++G F+  A L  M  E   +H++  L V ++ F  
Sbjct: 13  PIAMAFAAANDLFTMRIPNVISLALIGGFVALAVLTRMPLETFGMHVVCALGVLLLTFAL 72

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI--TNHIPIF 133
           FAFN++GGGD KL+ + A+W G +   L F+ F  + GG+L + IL+ R +   + +P+ 
Sbjct: 73  FAFNLLGGGDAKLMAAGALWMG-SAQILPFIAFTTMFGGVLCLLILSYRRMVPADLLPLP 131

Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
           G +  +       +PYGIAI+  GL+ +P + LF++
Sbjct: 132 G-WAQRLHTAGGPVPYGIAIAASGLMVFPTTELFRM 166


>gi|118589701|ref|ZP_01547106.1| peptidase A24A, prepilin type IV [Stappia aggregata IAM 12614]
 gi|118437787|gb|EAV44423.1| peptidase A24A, prepilin type IV [Stappia aggregata IAM 12614]
          Length = 168

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 2/166 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           MV +A+ +I P  + F   SDL +  I NRVS++++  F + A   G+  +   +H L  
Sbjct: 1   MVQAAILVIFPMLVAFGGASDLLTMTIQNRVSLLLIAGFAILAVATGLPLQAWGMHALAF 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +VF  CF FFAF  MGGGDVK +++ A+W G++   L F+ FVAI G  L+  +L +R 
Sbjct: 61  AVVFAPCFLFFAFGWMGGGDVKFISAIALWIGFSQELLMFVLFVAIYGMFLTFGLLIMRQ 120

Query: 126 --ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
             +   +     +  +    K+ IPYGIAI++ GL  Y  +Y F +
Sbjct: 121 QSVVPSVLYRQEWFARLHDSKSGIPYGIAIAIAGLQVYSSTYWFDL 166


>gi|148258233|ref|YP_001242818.1| putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp.
           BTAi1]
 gi|146410406|gb|ABQ38912.1| Putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp.
           BTAi1]
          Length = 174

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 10/165 (6%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           A  L+ P  + FAA SDLF+  I NRVS  +L  FL+ A L GM  + +  H+  G ++ 
Sbjct: 6   ARLLLFPALMAFAAASDLFTMTISNRVSFALLAGFLVLAPLSGMGMQDMLSHVGAGALLL 65

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++ F  FAF  +GGGD K+ ++ A+WFG+    +++L + +I GG+L++ ++  R     
Sbjct: 66  VVAFACFAFGWIGGGDAKVASAAALWFGFA-HLMNYLLYASIFGGVLTLLLMQFR----Q 120

Query: 130 IPIFGMFVPKSFLMK-----NKIPYGIAISMGGLISYPDSYLFKV 169
            P+  M   + +L +     + +PYGIA+++G L+ YPD+   K 
Sbjct: 121 WPLPYMLAGQPWLARLHARESGVPYGIALALGALMVYPDTDWVKT 165


>gi|319785610|ref|YP_004145086.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171498|gb|ADV15036.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 172

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 102/176 (57%), Gaps = 9/176 (5%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ + +F++ PFC++FAA+SD+ S  I NRV ++++  F L A L GMD+     H   G
Sbjct: 1   MLEALIFVVFPFCMLFAAISDMLSMTIANRVPVLLVVVFALVAPLTGMDWAAYGGHFAAG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR- 124
            +V  + F  FA   MGGGD KLL +TA+W G   + + +L    I+GG+L++ I+  R 
Sbjct: 61  ALVLAVTFGLFAIGGMGGGDAKLLAATAMWMGLNVNLVEYLVASTIIGGLLTLAIILYRK 120

Query: 125 ----MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
                +T   P    F  ++      +PYG+A+ +GGL++YPDS L   AL  L+A
Sbjct: 121 SMLAAVTGQNPFLRHFADEA----KGVPYGVALGLGGLLTYPDSPLMIWALARLAA 172


>gi|299132285|ref|ZP_07025480.1| peptidase A24A prepilin type IV [Afipia sp. 1NLS2]
 gi|298592422|gb|EFI52622.1| peptidase A24A prepilin type IV [Afipia sp. 1NLS2]
          Length = 174

 Score = 97.4 bits (241), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 87/150 (58%), Gaps = 2/150 (1%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P  + FAA SDL +  I NRVS++++  F + A + GM +E I  H L GL V II F  
Sbjct: 12  PALMAFAAASDLLTMTISNRVSLLLIAGFFVLAIVTGMGWEAIGWHALAGLSVLIIAFAC 71

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FAF  +GGGD K+  +TA+WFG     L +L   ++LGG+L++ IL  R  T    + G 
Sbjct: 72  FAFGWIGGGDAKVAAATALWFG-FGYLLDYLLLASVLGGVLTLAILQFRNWTLPTWLLGQ 130

Query: 136 -FVPKSFLMKNKIPYGIAISMGGLISYPDS 164
            ++ +       IPYGIA++   L+ YPD+
Sbjct: 131 DWLVRLHGKDTGIPYGIALAAAALLIYPDT 160


>gi|254473700|ref|ZP_05087095.1| peptidase A24A, prepilin type IV [Pseudovibrio sp. JE062]
 gi|211957086|gb|EEA92291.1| peptidase A24A, prepilin type IV [Pseudovibrio sp. JE062]
          Length = 170

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 101/169 (59%), Gaps = 10/169 (5%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ + + +I P  L  AA  DLF+  IPN+++++++ +F+  AFLL +  + + +   +G
Sbjct: 1   MIANGLLIIFPLLLAVAAFFDLFTMTIPNKLNLLLVVAFVAMAFLLQLPLQQVGMSFALG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
             V +I F  FA  +MGGGDVK L + ++W G + + L F+   +I GG L++ IL +R 
Sbjct: 61  FGVMVIGFGLFALGVMGGGDVKFLAAISLWLGLSMNMLDFILLTSIYGGALTLVILALR- 119

Query: 126 ITNHIPIFGMFVP-KSFLM-----KNKIPYGIAISMGGLISYPDSYLFK 168
               +P F  F+  +++L+     K+ +PYGIAI++ G+  YP++  F 
Sbjct: 120 ---KVPYFPQFMHGQAWLLKLHDKKSGVPYGIAIAIAGIQVYPNTLWFS 165


>gi|239833239|ref|ZP_04681568.1| peptidase A24A prepilin type IV [Ochrobactrum intermedium LMG 3301]
 gi|239825506|gb|EEQ97074.1| peptidase A24A prepilin type IV [Ochrobactrum intermedium LMG 3301]
          Length = 187

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 81/151 (53%), Gaps = 9/151 (5%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             +V A ++DL S  I NRVSI +   FLL A L G+       HL VG I  II F  F
Sbjct: 25  LAMVTAMVTDLTSMTIRNRVSIGLTLGFLLLAPLCGISLSDFGWHLAVGGIALIITFALF 84

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI-----TNHIP 131
               MGGGD KL+ +TA+W+G  PS + +L  V+ILGG+L++ I+  RM+      +   
Sbjct: 85  CLRAMGGGDAKLIAATALWYGPDPSLMDYLVMVSILGGVLTLTIILYRMVPRPLLADRFA 144

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
             G    K       IPYGIA+   GL ++P
Sbjct: 145 FMGTLARKDV----GIPYGIALGAAGLWTFP 171


>gi|220922777|ref|YP_002498079.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
           2060]
 gi|219947384|gb|ACL57776.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
           2060]
          Length = 168

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 6/156 (3%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           PF + +AA SDL +  IPN +S+V++  F L A  LG+ +  + LHL  G +   + F  
Sbjct: 11  PFLMAYAAASDLLTMTIPNALSLVLVAVFPLAALALGLSWSEVGLHLGAGGLTLALTFTL 70

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           F F ++GGGD KL  +TA+W G+ P    ++   ++ GG+L++ IL VR+  + +P   +
Sbjct: 71  FCFGLIGGGDAKLAAATALWLGFEP-LADYVLAASLAGGVLTLLILQVRI--HPLPRIAV 127

Query: 136 FVPKSFLMKNK---IPYGIAISMGGLISYPDSYLFK 168
             P +  + ++   +PYGIA++   L+  P + ++ 
Sbjct: 128 SWPWALRLHDRRTGVPYGIALAFAALVVCPAAPMWH 163


>gi|323137423|ref|ZP_08072501.1| peptidase A24A prepilin type IV [Methylocystis sp. ATCC 49242]
 gi|322397410|gb|EFX99933.1| peptidase A24A prepilin type IV [Methylocystis sp. ATCC 49242]
          Length = 168

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 95/165 (57%), Gaps = 6/165 (3%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +   ++ P  +VFAA SDLF+  IPNRVS +++  +L  A  L +  +   LH+  G
Sbjct: 1   MIEALALIVFPTMMVFAAFSDLFTMTIPNRVSALLVLVYLALAVYLPIPLQTFGLHVSSG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           L +  + F  F F  +GGGD KL ++TA+W GW    L +    +I GG+L+V I+ +R 
Sbjct: 61  LAMLALTFVLFQFGWVGGGDAKLASATALWLGWE-HLLDYGLVASIAGGVLTVIIIELR- 118

Query: 126 ITNHIP---IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
             + +P   +   F+ +     N +PYGIA+++ GL+ YP + LF
Sbjct: 119 -RHDLPRRVLSVAFIARLAEKTNGVPYGIALAVAGLLVYPQTGLF 162


>gi|92116015|ref|YP_575744.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14]
 gi|91798909|gb|ABE61284.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14]
          Length = 174

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 93/165 (56%), Gaps = 10/165 (6%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           A  L+ P  + FAA SDL +  I NRVS++++  FL+ A L GM    + LH   GL V 
Sbjct: 6   ARLLLFPALMAFAAASDLLTMTISNRVSLLLVAGFLVVAALSGMSLHDMLLHAGAGLAVL 65

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++ F  FA   +GGGD K+  + A+WFG+    L +L + ++ GG L++ +L  R     
Sbjct: 66  LVAFTCFAMGWVGGGDAKVAAAAALWFGFG-HLLEYLVYASLFGGALTLLLLQFR----Q 120

Query: 130 IPIFGMFVPKSFLMK-----NKIPYGIAISMGGLISYPDSYLFKV 169
            P+  +F  + +L++       IPYGIA+++G L+ YP++   K 
Sbjct: 121 WPLPALFYSQDWLLRLHGKDTGIPYGIALALGALLIYPETGWIKA 165


>gi|146338125|ref|YP_001203173.1| putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp.
           ORS278]
 gi|146190931|emb|CAL74936.1| Putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp.
           ORS278]
          Length = 174

 Score = 94.4 bits (233), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 92/161 (57%), Gaps = 2/161 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           A  LI P  + FAA SDL +  I NRVS+ ++  FL+ A L GM    + +H   G  + 
Sbjct: 6   ARLLIFPALMAFAAASDLLTMTISNRVSLALVAGFLVMAPLSGMSMADMLMHCGAGASLL 65

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           +I F  FAF  +GGGD K+ ++ A+WFG+    +++L + +I GG+L++ ++  R     
Sbjct: 66  VIAFTCFAFGWIGGGDAKVASAAALWFGFA-HLMNYLLYASIFGGVLTLALMQFRQWPLP 124

Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
             + G  ++ +     + +PYGIA+++G L+ YP++   K 
Sbjct: 125 YGLAGQPWLARLHAKDSGVPYGIALALGALMVYPETEWVKA 165


>gi|260461951|ref|ZP_05810196.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum
           WSM2075]
 gi|259032198|gb|EEW33464.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum
           WSM2075]
          Length = 172

 Score = 94.4 bits (233), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 9/176 (5%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ + +F++ PFC++FAA+SD+ S  I NRVS++++  F L A L GM++     H   G
Sbjct: 1   MLEALIFVVFPFCMLFAAISDMLSMTIANRVSVLLVIVFALVAPLTGMEWATYGWHFAAG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR- 124
            ++  + F  FA   MGGGD KLL +TAVW G     + +L     +GG+L++ I+  R 
Sbjct: 61  ALILAVTFGLFAMGGMGGGDAKLLAATAVWMGLNVHLVEYLVVSTFIGGLLTLAIVLYRK 120

Query: 125 ----MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
               +IT   P    F  +S      +PYGIA+ +GGL++YPDS L   AL  L++
Sbjct: 121 SPLAVITGRNPFLRHFAEES----AGVPYGIALGLGGLLTYPDSPLMVWALARLAS 172


>gi|153008057|ref|YP_001369272.1| peptidase A24A prepilin type IV [Ochrobactrum anthropi ATCC 49188]
 gi|151559945|gb|ABS13443.1| peptidase A24A prepilin type IV [Ochrobactrum anthropi ATCC 49188]
          Length = 174

 Score = 94.0 bits (232), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M  +A+  I    +V A ++DL S  I NRVSI +   F+L A   G+       HL VG
Sbjct: 1   MTAAAMTAIFALAMVTAMITDLTSMTIRNRVSIGLTLGFVLLAPFCGISLADYGWHLAVG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IV II F  F    MGGGD KL+ +TA+WFG   S + ++  V+ILGG+L++ I+  RM
Sbjct: 61  GIVLIITFSLFCLRAMGGGDAKLIAATALWFGPNASLMDYIVMVSILGGVLTLTIILYRM 120

Query: 126 I-----TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
           I      +     G    K       IPYGIA+   GL ++P S
Sbjct: 121 IPRPLLADRYAFLGTLARKDV----GIPYGIALGAAGLWTFPLS 160


>gi|90425195|ref|YP_533565.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris
           BisB18]
 gi|90107209|gb|ABD89246.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris
           BisB18]
          Length = 174

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 2/155 (1%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P  + FAA SDLF+  I NRVS++++  FL  A L GM  + I  H+  G  V  I F  
Sbjct: 12  PALMAFAAASDLFTMTISNRVSLLLIVGFLALAGLGGMGLQEILSHIAAGGSVLAIAFAC 71

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FAF  +GGGD K+ ++ A+WFG+    L +L + ++ GG L++ +L  R       + G 
Sbjct: 72  FAFGWVGGGDAKVASAAALWFGFD-HLLEYLVYASLFGGALTLLLLQFRQWPLPYALCGQ 130

Query: 136 -FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
            ++ +    +  IPYGIA++ G L+ YP++   + 
Sbjct: 131 PWLLRLHAKETGIPYGIALATGALMIYPETEWIRA 165


>gi|91977983|ref|YP_570642.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB5]
 gi|91684439|gb|ABE40741.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB5]
          Length = 174

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 10/154 (6%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P  + FAA SDLF+  I NRVS++++  F++ A L GM    IA H   GL V  + F  
Sbjct: 12  PALMAFAAASDLFTMTISNRVSLLLVAGFIVLAPLTGMGLYEIASHFGAGLAVLAVAFGC 71

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FA   +GGGD K+  + A+WFG+    L +L + ++ GG L++ +L+ R      P+   
Sbjct: 72  FAMGWVGGGDAKVAAAAALWFGFG-HLLDYLVYASLFGGALTLLLLSFR----QWPLPYQ 126

Query: 136 FVPKSFLMK-----NKIPYGIAISMGGLISYPDS 164
              + +LM+       IPYGIA++MG L  YP +
Sbjct: 127 LAGQGWLMRLHAKETGIPYGIALAMGALAVYPQT 160


>gi|220922526|ref|YP_002497828.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
           2060]
 gi|219947133|gb|ACL57525.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
           2060]
          Length = 168

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 5/154 (3%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P  + +AA SDL +  IPN +S+ ++  F   A L+G+D+  +A H   G  + ++CF  
Sbjct: 9   PAIMAYAAASDLLTMRIPNFISVALIVIFFGLAILVGVDWSTVAWHAAAGATMLVVCFLM 68

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           +A   +GGGD KL  +T +W G+TP  L +L  V ++GG++ V  L++R     +P F +
Sbjct: 69  YALGWIGGGDAKLAAATVLWLGFTPVLLDYLLIVGLVGGMMGVLFLSIRRFP--LPAFAL 126

Query: 136 ---FVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
              ++ +    K  +PYGIA++  GL  YPDS L
Sbjct: 127 TWEWLVRLHDKKAGVPYGIALAAAGLAVYPDSLL 160


>gi|27376552|ref|NP_768081.1| pilus assembly protein prepilin peptidase subunit [Bradyrhizobium
           japonicum USDA 110]
 gi|27349693|dbj|BAC46706.1| pilus assembly protein prepilin peptidase subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 174

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 91/162 (56%), Gaps = 4/162 (2%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIV 68
           A  L+ P  + FAA SDLF+  I NRVS+ ++  F   A   GM  YE++  H+  G +V
Sbjct: 6   ARLLLFPALMAFAAASDLFTMTISNRVSLALVAGFFALALSGGMAPYEMLG-HVGAGALV 64

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
            ++ F  FA   +GGGD K+  S A+WFG+    ++FL + ++ GG L++ +L  R    
Sbjct: 65  LVVAFTCFAMGWVGGGDAKVAASVALWFGFA-QLMNFLLYASLFGGALTLLLLQFRQWPL 123

Query: 129 HIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
              + G  ++ +    ++ IPYGIA+++  L+ YP++   K 
Sbjct: 124 PYGLAGQAWLARLHAKESGIPYGIALALSALMVYPETEWVKA 165


>gi|115525747|ref|YP_782658.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris
           BisA53]
 gi|115519694|gb|ABJ07678.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris
           BisA53]
          Length = 174

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 10/159 (6%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P  + FAA SDL +  I NRVS++++  F   A L GM ++ + +H   G  V ++ F  
Sbjct: 12  PALMAFAAASDLLTMTISNRVSLLLVLGFFGMALLSGMGWQAVLMHASAGGTVLLVAFGC 71

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FA   +GGGD K+ ++ A+WFG+    L +L + ++ GG L++ +L  R      P+ G+
Sbjct: 72  FAMGWIGGGDAKVASAAALWFGFD-QLLQYLVYASLFGGALTLMLLQFR----QWPLPGV 126

Query: 136 FVPKSFLMK-----NKIPYGIAISMGGLISYPDSYLFKV 169
              + +L++       IPYGIA++ G L+ YP +   + 
Sbjct: 127 LRGQPWLLRLHSNATGIPYGIALATGALMIYPHTAWIRA 165


>gi|296444398|ref|ZP_06886363.1| peptidase A24A prepilin type IV [Methylosinus trichosporium OB3b]
 gi|296258045|gb|EFH05107.1| peptidase A24A prepilin type IV [Methylosinus trichosporium OB3b]
          Length = 167

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 7/167 (4%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +   ++ P  +VFAA +DL +  IPNRVSI ++  F   A    M   +   H   G
Sbjct: 1   MIEAVALVLFPTLMVFAAFTDLLTMTIPNRVSIALVVIFAALAAYTQMPLAIALSHASCG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           +++ I+ F  F    +GGGD KL ++TA+W GW    L +    +++GG L++ IL +R 
Sbjct: 61  MVMLIVTFAMFQLGWIGGGDAKLASATALWLGWD-HLLDYGLAASLIGGALTLVILELR- 118

Query: 126 ITNHIPIFGMFVPK-SFLMKN--KIPYGIAISMGGLISYPDSYLFKV 169
                P      P+ + L  +   +PYGIA+++GGL+ YP S ++ +
Sbjct: 119 --RREPRAVADSPRFAHLCDSMAGVPYGIALAIGGLLIYPQSRVWTL 163


>gi|13474658|ref|NP_106227.1| type IV prepilin peptidase, cpaA [Mesorhizobium loti MAFF303099]
 gi|14025413|dbj|BAB52013.1| type IV prepilin peptidase; CpaA [Mesorhizobium loti MAFF303099]
          Length = 175

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 104/178 (58%), Gaps = 9/178 (5%)

Query: 4   SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
           + M+ + +F++ PFC++FAA+SD+ S  I NRVS++++  F L A L GM++     H  
Sbjct: 2   APMLEALIFVVFPFCMLFAAISDMLSMTIANRVSVLLVVVFALVAPLTGMEWAAYGWHFA 61

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
            G +V  + F  FA   MGGGD KLL +TAVW G     + +L    ++GG+L++ IL  
Sbjct: 62  AGALVLAVTFGLFAMGGMGGGDAKLLAATAVWMGLNIHLVEYLVVSTLIGGLLTIAILLY 121

Query: 124 R-----MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
           R     +IT   P    F  +S      IPYGIA+ +GGL++YPDS L   AL  L++
Sbjct: 122 RKSPLAVITGRNPFLRHFAEESV----GIPYGIALGLGGLLTYPDSPLMVWALASLAS 175


>gi|167648154|ref|YP_001685817.1| peptidase A24A prepilin type IV [Caulobacter sp. K31]
 gi|167350584|gb|ABZ73319.1| peptidase A24A prepilin type IV [Caulobacter sp. K31]
          Length = 170

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 11/163 (6%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           A+ L+ P  +V AAL D+ S  IPN +S+ ++ +F+  A + G     I L L  GL   
Sbjct: 7   ALLLVFPALVVIAALKDVTSFTIPNWISLALIAAFVPAALVSGASLSSIGLCLATGLGAL 66

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR----- 124
           ++    FA   +GGGD KL  ++A+W GW P+ L F+    + GG L++ IL++R     
Sbjct: 67  VVGMGMFAAGWIGGGDAKLFAASALWLGW-PATLPFMLTTGLAGGALTLGILSLRSGWFE 125

Query: 125 -MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
            ++    P    +V K       IPYG+AI++G L+++P   L
Sbjct: 126 PILAGSPP----WVRKLGANGGDIPYGVAIAVGALVTFPQGAL 164


>gi|114568968|ref|YP_755648.1| peptidase A24A, prepilin type IV [Maricaulis maris MCS10]
 gi|114339430|gb|ABI64710.1| peptidase A24A, prepilin type IV [Maricaulis maris MCS10]
          Length = 165

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 2/140 (1%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
           D    +IPN +  ++L +F + A   G+ +  +  HLL G +  +I F  FA   +GGGD
Sbjct: 21  DATKFIIPNWLCGLVLLTFPIAAVAAGLGWAEVGNHLLGGALALVIGFALFAPGWVGGGD 80

Query: 86  VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
            KL  + A+WFGW P FL+FL    + GG+L V +L +R +   +P+       + L  N
Sbjct: 81  AKLFAAAALWFGW-PEFLAFLIHTVLAGGVLVVILLALRWLAPRLPVLATRTEGTALAVN 139

Query: 146 K-IPYGIAISMGGLISYPDS 164
             +PYGIAI+ G   S P++
Sbjct: 140 APVPYGIAIAAGVFWSLPNT 159


>gi|295690800|ref|YP_003594493.1| peptidase A24A prepilin type IV [Caulobacter segnis ATCC 21756]
 gi|295432703|gb|ADG11875.1| peptidase A24A prepilin type IV [Caulobacter segnis ATCC 21756]
          Length = 170

 Score = 87.8 bits (216), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 3/155 (1%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P   +  AL DL S  IPN VS+ ++ +F+  A + G+    I + L VGL   ++    
Sbjct: 13  PALAIVGALKDLTSYTIPNWVSLALIAAFVPAALISGVSLPQIGVCLAVGLGALVLGMGM 72

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR--MITNHIPIF 133
           FA   +GGGD KLL + A+W GW P+ L FL +  + GG L+  IL +R   +   +   
Sbjct: 73  FAAGWIGGGDGKLLAACALWMGW-PAVLPFLLYTGLAGGALTFAILALRSGWVAPMVAGG 131

Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
             +V +       +PYG+AI+ G LI++P + L +
Sbjct: 132 PAWVRRLGQSGGDLPYGVAIAAGALIAFPKALLAQ 166


>gi|170740623|ref|YP_001769278.1| peptidase A24A prepilin type IV [Methylobacterium sp. 4-46]
 gi|168194897|gb|ACA16844.1| peptidase A24A prepilin type IV [Methylobacterium sp. 4-46]
          Length = 168

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 7/161 (4%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           PF + +AA SDL +  IPN +S+ +L  F + A LLG+ +     HL  G I   + F  
Sbjct: 11  PFLMAYAAASDLLTMTIPNALSLALLAVFPVAALLLGLSWGEFGEHLAAGGITLAVTFAL 70

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           F F ++GGGD KL  +TA+W G+ P    ++   ++ GG+L++ IL  R     +P    
Sbjct: 71  FCFGLIGGGDAKLAAATALWLGFEP-LADYVLAASLAGGVLTLLILQAR--AYPLPRIAA 127

Query: 136 FVPKSFLM---KNKIPYGIAISMGGLISYPDSYLFKVALMG 173
             P +  +   +  +PYGIA++   L+  P + L++ AL+G
Sbjct: 128 SWPWALRLHDTRTGVPYGIALAAAALVVCPSAPLWR-ALLG 167


>gi|170749894|ref|YP_001756154.1| peptidase A24A prepilin type IV [Methylobacterium radiotolerans JCM
           2831]
 gi|170656416|gb|ACB25471.1| peptidase A24A prepilin type IV [Methylobacterium radiotolerans JCM
           2831]
          Length = 187

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 6/161 (3%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           PF + +AA SDL + +IPNR+S+ +L  F L A    M +  I  H   G +V ++ F  
Sbjct: 30  PFLMAYAAASDLLTMLIPNRISLALLAGFALLALTSAMSWTEIGFHCAAGAVVLLVTFTL 89

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FAF I+GGGD KL  +TA+W G+      +L   ++ GG L++ IL  R  T+ +P+   
Sbjct: 90  FAFGIIGGGDAKLAAATALWLGFD-GLGDYLLVASVFGGALTLAILLAR--THPLPVRIA 146

Query: 136 FVPKSFLM---KNKIPYGIAISMGGLISYPDSYLFKVALMG 173
            +P +  +   K  IPYGIA++   L+  P++ ++  AL G
Sbjct: 147 RMPFALHLHDAKTGIPYGIALAAAALLVLPETEVWTRALAG 187


>gi|75674501|ref|YP_316922.1| peptidase A24A, prepilin type IV [Nitrobacter winogradskyi Nb-255]
 gi|74419371|gb|ABA03570.1| peptidase A24A, prepilin type IV [Nitrobacter winogradskyi Nb-255]
          Length = 174

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           A  L+ P  + FAA SDL +  I NRVS++++  FL+ A L GM    +  H   GL V 
Sbjct: 6   ARLLLFPALMAFAAASDLLTMTISNRVSLLLVAGFLVLAPLSGMGLHEMLSHAGAGLAVL 65

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++ F  FA   +GGGD K+  + A+WFG+  + L +L + ++ GG L++ +L  R     
Sbjct: 66  VVAFSCFAMGWVGGGDAKVAAAAALWFGFGHT-LEYLVYASLFGGALTLLLLQFRQWPLP 124

Query: 130 IPIFGMFVPKSFLMKNK-IPYGIAISMGGLISYPDS 164
             ++G         KN  IPYGIA++   L+ YP++
Sbjct: 125 ASLYGQDWLLRLHGKNTGIPYGIALAFAALLIYPET 160


>gi|16127177|ref|NP_421741.1| pilus assembly protein CpaA [Caulobacter crescentus CB15]
 gi|221235978|ref|YP_002518415.1| pilus assembly prepilin peptidase CpaA [Caulobacter crescentus
           NA1000]
 gi|7208423|gb|AAF40190.1|AF229646_2 CpaA [Caulobacter crescentus CB15]
 gi|13424575|gb|AAK24909.1| pilus assembly protein CpaA [Caulobacter crescentus CB15]
 gi|220965151|gb|ACL96507.1| pilus assembly prepilin peptidase CpaA [Caulobacter crescentus
           NA1000]
          Length = 170

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           + LI P   +  AL DL S  IPN +S+ ++ +F+  A + G     I L L VGL   +
Sbjct: 8   LLLIFPALAIVGALKDLTSYTIPNWISLALIAAFVPAALVSGAPLSQIGLCLAVGLGALV 67

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           +    FA   +GGGD KL    A+W GW P+ L+F+ +  + GG+L+  IL +R      
Sbjct: 68  LGMGMFAAGWIGGGDGKLFAVCALWLGW-PAALTFMLYTGLAGGVLTFAILGLRSGWLAP 126

Query: 131 PIFG--MFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
            + G   ++ K       +PYG+AI++G L ++P   L
Sbjct: 127 AVAGGPAWLRKLGTTGGDLPYGVAIAVGALAAFPQGAL 164


>gi|254419519|ref|ZP_05033243.1| peptidase, A24 (type IV prepilin peptidase) family [Brevundimonas
           sp. BAL3]
 gi|196185696|gb|EDX80672.1| peptidase, A24 (type IV prepilin peptidase) family [Brevundimonas
           sp. BAL3]
          Length = 173

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 16/160 (10%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P  ++   L DL +  IPN +S+V+L +F   A L+G+    +A+H+ VG    I+    
Sbjct: 13  PILMIATGLHDLTTMRIPNWISLVLLATFFPAALLVGLSPVEVAIHVGVGFAALIVGMIM 72

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FA   +GGGD K L +  +W G T      L + AI+GG   + +L VR    + P   M
Sbjct: 73  FALRWIGGGDAKALAAACLWMGLT-GLAPLLLWTAIVGGGFCLLLLLVR---QYYP---M 125

Query: 136 FVPKSFLM---------KNKIPYGIAISMGGLISYPDSYL 166
             P +F +         K  IPYG+AI++G LI++P+  L
Sbjct: 126 VAPAAFRIGWLARLMEPKGDIPYGVAIAIGALIAFPEGDL 165


>gi|329847251|ref|ZP_08262279.1| type IV leader peptidase family protein [Asticcacaulis biprosthecum
           C19]
 gi|328842314|gb|EGF91883.1| type IV leader peptidase family protein [Asticcacaulis biprosthecum
           C19]
          Length = 172

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 2/153 (1%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P  L++AA+SDL    I NR+++++ G+F   A LLG+    I +H  V     ++    
Sbjct: 12  PAYLLWAAVSDLVRMTISNRLNLILAGAFFPAALLLGLSLGDIGIHTAVAAGGLVLGMVL 71

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI-PIFG 134
           FA   MGGGD KL+ +TA+W G    F++ LF+ A+ GG L++ I+  R     + P   
Sbjct: 72  FALRFMGGGDAKLIAATALWLG-LDGFIALLFYTALAGGALTLGIVIARKFFWALAPKLP 130

Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
            ++ +    K  IPYGIAI  GGL++ P   L+
Sbjct: 131 KWLGQHLEAKTGIPYGIAICAGGLLAIPHGDLW 163


>gi|188581658|ref|YP_001925103.1| peptidase A24A prepilin type IV [Methylobacterium populi BJ001]
 gi|179345156|gb|ACB80568.1| peptidase A24A prepilin type IV [Methylobacterium populi BJ001]
          Length = 172

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 76/138 (55%), Gaps = 4/138 (2%)

Query: 16  PFCLVFAALSDLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
           PF + +AA SDL +  I NRV S+V LG F+L A   GM +  ++ HL  G +  +I F 
Sbjct: 15  PFLMAYAAASDLLTMRISNRVTSLVSLG-FVLYAVASGMAWADLSRHLAAGALTLLITFF 73

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
           FFA   +GGGD KL  STA+W G     L +L   ++LGG L++ IL+ R      P+  
Sbjct: 74  FFARGWIGGGDAKLAASTALWIGLG-HLLDYLLMASLLGGPLTLTILSARTYPLPKPVLK 132

Query: 135 M-FVPKSFLMKNKIPYGI 151
           + F       +  IPYGI
Sbjct: 133 LPFAVHLHDARTGIPYGI 150


>gi|86748909|ref|YP_485405.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris HaA2]
 gi|86571937|gb|ABD06494.1| Peptidase A24A, prepilin type IV [Rhodopseudomonas palustris HaA2]
          Length = 173

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 10/163 (6%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P  + FAA SDLF+  I NRVS++++  FL  A + GM      LHL  G+ V  I F  
Sbjct: 12  PALMAFAAASDLFTMTISNRVSLLLVAGFLALAPMSGMSLADFGLHLGAGMTVLAIAFGC 71

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FA   +GGGD K+  + A+WFG+    + FL + ++ GG L++ +L  R      P+ G 
Sbjct: 72  FAMGWIGGGDAKVAAAAALWFGFA-HLMDFLLYASLFGGALTLLLLGFRQWPLPYPLAG- 129

Query: 136 FVPKSFLMK-----NKIPYGIAISMGGLISYPDSYLFKVALMG 173
              +S+L++       IPYGIA+++G L  YP +   K   +G
Sbjct: 130 ---QSWLLRLHAKETGIPYGIALAIGALAVYPQTEWIKAVDLG 169


>gi|254561619|ref|YP_003068714.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens DM4]
 gi|254268897|emb|CAX24858.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens DM4]
          Length = 172

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 6/152 (3%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           PF + +AA SDL +  I NRV+ ++   FLL A + GMD+  ++ HL  G +  +I F  
Sbjct: 15  PFLMAYAAASDLLTMRISNRVTGLVFVGFLLYALVSGMDWSDLSRHLAAGSLTLVITFAL 74

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FA   +GGGD KL  STA+W G   +   +L   +ILG  L++ I++ R     +P   +
Sbjct: 75  FARGWIGGGDAKLAASTALWIGLA-NLPEYLILASILGAPLTLSIVSARKYP--LPKLAL 131

Query: 136 FVPKSFLM---KNKIPYGIAISMGGLISYPDS 164
             P +  +   K  +PYGIA++   L+  P+S
Sbjct: 132 KFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 163


>gi|163851901|ref|YP_001639944.1| peptidase A24A prepilin type IV [Methylobacterium extorquens PA1]
 gi|163663506|gb|ABY30873.1| peptidase A24A prepilin type IV [Methylobacterium extorquens PA1]
          Length = 169

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 6/152 (3%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           PF + +AA SDL +  I NRV+ ++   FLL A + GMD+  ++ HL  G +  +I F  
Sbjct: 12  PFLMAYAAASDLLTMRISNRVTGLVFVGFLLYAMVSGMDWSDLSRHLAAGSLTLVITFAL 71

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FA   +GGGD KL  STA+W G   +   +L   +ILG  L++ I++ R     +P   +
Sbjct: 72  FARGWIGGGDAKLAASTALWIGLA-NLPEYLILASILGAPLTLSIVSARKYP--LPKLAL 128

Query: 136 FVPKSFLM---KNKIPYGIAISMGGLISYPDS 164
             P +  +   K  +PYGIA++   L+  P+S
Sbjct: 129 KFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 160


>gi|240139024|ref|YP_002963499.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens AM1]
 gi|240008996|gb|ACS40222.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens AM1]
          Length = 172

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 6/152 (3%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           PF + +AA SDL +  I NRV+ ++   FLL A + GMD+  ++ HL  G +  +I F  
Sbjct: 15  PFLMAYAAASDLLTMRISNRVTGLVFVGFLLYAMVSGMDWSDLSRHLAAGSLTLVITFAL 74

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FA   +GGGD KL  STA+W G   +   +L   +ILG  L++ I++ R     +P   +
Sbjct: 75  FARGWIGGGDAKLAASTALWIGLA-NLPEYLILASILGAPLTLSIVSARKYP--LPKLAL 131

Query: 136 FVPKSFLM---KNKIPYGIAISMGGLISYPDS 164
             P +  +   K  +PYGIA++   L+  P+S
Sbjct: 132 KFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 163


>gi|85713503|ref|ZP_01044493.1| peptidase A24A, prepilin type IV [Nitrobacter sp. Nb-311A]
 gi|85699407|gb|EAQ37274.1| peptidase A24A, prepilin type IV [Nitrobacter sp. Nb-311A]
          Length = 174

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 10/160 (6%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           A  L+ P  + FAA SDL +  I NRVS++++  FLL A L GM    +  H   GL V 
Sbjct: 6   ARLLLFPALMAFAAASDLLTMTISNRVSLLLIAGFLLLAPLSGMGLHEMLSHAGAGLAVL 65

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++ F  FA   +GGGD K+  ++A+WFG+  + L +L + ++ GG L++ +L  R     
Sbjct: 66  VVAFSCFAMGWIGGGDAKVAAASALWFGFGHT-LEYLVYASLFGGALTLLLLQFR----Q 120

Query: 130 IPIFGMFVPKSFLMK-----NKIPYGIAISMGGLISYPDS 164
            P+      + +L++       IPYGIA++   L+ YP++
Sbjct: 121 WPLPASLYSQDWLLRLHGRNAGIPYGIALAFAALLIYPET 160


>gi|39936738|ref|NP_949014.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris CGA009]
 gi|192292564|ref|YP_001993169.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris TIE-1]
 gi|39650594|emb|CAE29117.1| putative type IV prepilin peptidase, cpaA [Rhodopseudomonas
           palustris CGA009]
 gi|192286313|gb|ACF02694.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris TIE-1]
          Length = 174

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 4/156 (2%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P  + FAA SDL +  I NR+S++++  FL+ A L G+    I LH   G +V  + F  
Sbjct: 12  PALMAFAATSDLLTMTISNRISLLLVAGFLVLAPLTGLGAYDILLHFGAGALVLAVAFGC 71

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM--ITNHIPIF 133
           FA   +GGGD K++ + A+WFG+    L +L + ++ GG L++ +L  R   +   +   
Sbjct: 72  FAMGWIGGGDAKVVAAAALWFGFD-HLLDYLLYASLFGGALTLLLLGFRQWPLPYRLACQ 130

Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
           G +V +    +  IPYGIA++MG L+ YP +   K 
Sbjct: 131 G-WVLRLHDQQTGIPYGIALAMGALVIYPHTEWIKA 165


>gi|307293448|ref|ZP_07573294.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1]
 gi|306881514|gb|EFN12730.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1]
          Length = 150

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 14/150 (9%)

Query: 22  AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNI 80
           A+++DL S +I NR+++ +     L     G+  +  +A+ LLV LIVFI+    FA   
Sbjct: 14  ASVTDLRSRIISNRLNLTVAALAPLWWLACGLPLWPGMAVQLLVALIVFIVFAALFALGC 73

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
           MGGGDVKLL + A+WF W  + LS L  +A+LGGI+++  +    +T             
Sbjct: 74  MGGGDVKLLGALALWFPWQAT-LSMLMLMAVLGGIVTIVTVVHHRMTRR----------- 121

Query: 141 FLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
            L + +IPYGIAIS   L    + Y+ + A
Sbjct: 122 -LGQPQIPYGIAISFAALWLLGERYINQFA 150


>gi|294012431|ref|YP_003545891.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum
           UT26S]
 gi|292675761|dbj|BAI97279.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum
           UT26S]
          Length = 157

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 14/150 (9%)

Query: 22  AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNI 80
           A+++DL S +I NR+++ + G   L     G+  +  +A+ LL GLIVF+     FA   
Sbjct: 21  ASVTDLRSRIISNRLNLTVAGLAPLWWLACGLPLWPGMAVQLLAGLIVFMAFAVLFALGC 80

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
           MGGGDVKLL + A+WF W  + LS L  +A+LGGI+++  +    +T             
Sbjct: 81  MGGGDVKLLGALALWFPWQAT-LSMLMLMAVLGGIVTIVTVVHHRMTRR----------- 128

Query: 141 FLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
            L + +IPYGIAIS   L    + Y+ + A
Sbjct: 129 -LGQPQIPYGIAISFAALWLLGERYINQFA 157


>gi|316933041|ref|YP_004108023.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris DX-1]
 gi|315600755|gb|ADU43290.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris DX-1]
          Length = 174

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 10/154 (6%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P  +VFAA SDL +  I NRVS+++L  FL+ A + GM   +  +H+  G  V  + F  
Sbjct: 12  PALMVFAATSDLLTMTISNRVSLLLLAGFLVLAPMSGMSLAVFGMHVGAGAAVLAVAFGC 71

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FA   +GGGD K+  + A+WFG+    L FL + ++ GG L++ +L+ R      P+  +
Sbjct: 72  FAMGWIGGGDAKVAAAAALWFGFG-DLLDFLLYASLFGGALTLLLLSFR----QWPLPYV 126

Query: 136 FVPKSFLMK-----NKIPYGIAISMGGLISYPDS 164
           F  +++L++       IPYGIA++MG L  YP +
Sbjct: 127 FAGQTWLLRLHAQETGIPYGIALAMGALAVYPQT 160


>gi|254293212|ref|YP_003059235.1| peptidase A24A prepilin type IV [Hirschia baltica ATCC 49814]
 gi|254041743|gb|ACT58538.1| peptidase A24A prepilin type IV [Hirschia baltica ATCC 49814]
          Length = 169

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 18/165 (10%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           LV+AA  D+F   IPN VSI++   FL TA+   +  E    H LVG I  II    F  
Sbjct: 14  LVYAACHDVFDRTIPNWVSILIAILFLPTAYFAELSLEQFGWHALVGAIALIIGIALFYL 73

Query: 79  NIMGGGDVKLLTSTAVWFGWT--PSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
            I GGGD KL+ + ++W G    P+FL+     AI GG++++ ++ +R +         F
Sbjct: 74  RIWGGGDAKLVAAVSLWMGLQAEPTFLAAF---AIAGGLIALPLIIIRRMK--------F 122

Query: 137 VPKS-----FLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
            PK+      L   K+PYG+AI+ G   + P S++   A+  + A
Sbjct: 123 EPKNDRLAKMLDTKKVPYGVAIAAGAFWAAPQSFVLMQAINSIGA 167


>gi|83312838|ref|YP_423102.1| Flp pilus assembly protein, protease CpaA [Magnetospirillum
           magneticum AMB-1]
 gi|82947679|dbj|BAE52543.1| Flp pilus assembly protein, protease CpaA [Magnetospirillum
           magneticum AMB-1]
          Length = 160

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 81/151 (53%), Gaps = 14/151 (9%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           +AVF++    L+ AA  DL +  I NRV + +L +F+  A   G+  E   LHL  G+  
Sbjct: 10  AAVFVV---ALLDAAWGDLRALRIRNRVPLALLAAFVPAALAGGLSGEDWLLHLGTGMAC 66

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL-SFLFFVAILGGILSVFILTVRMIT 127
           F++    F+  + GGGD KL+ +  +W G  P+ L  FL  +A++GG++++  L  R   
Sbjct: 67  FVVAAILFSLGVWGGGDAKLVPAVTLWLG--PAALPRFLLVMAVVGGLVALAALVRRRAE 124

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
                 G   P    ++  +PYGIAI+ GGL
Sbjct: 125 A-----GSLRPA---LRTHVPYGIAIAAGGL 147


>gi|23016177|ref|ZP_00055936.1| COG4960: Flp pilus assembly protein, protease CpaA
           [Magnetospirillum magnetotacticum MS-1]
          Length = 160

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 77/156 (49%), Gaps = 18/156 (11%)

Query: 4   SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
           S MVF A  L        AA  DL S  I NRV + +L +F+  A   G D      HL 
Sbjct: 9   SAMVFVAALL-------DAAWGDLRSLRIRNRVPLTILAAFVPWALCAGYDGGQWLAHLG 61

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL-SFLFFVAILGGILSVFILT 122
            G++ F+     F+  + GGGD KL+ +  +W G  PS L  FL  +A+ GG++++  L 
Sbjct: 62  TGVLCFVAAAILFSLGLWGGGDAKLVPAVVLWVG--PSDLPRFLLIMAVAGGLVALAALV 119

Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
           VR      P          +M+  IPYGIAI+ GGL
Sbjct: 120 VRRAEAGGP--------HPVMRGHIPYGIAIAAGGL 147


>gi|114800034|ref|YP_761693.1| pilus assembly protein CpaA [Hyphomonas neptunium ATCC 15444]
 gi|114740208|gb|ABI78333.1| pilus assembly protein CpaA [Hyphomonas neptunium ATCC 15444]
          Length = 171

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 5/146 (3%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           MV +A FL    C+V AAL D+    IPN +++ + G F+  A + G+  E+I  HL+ G
Sbjct: 4   MVLAAFFL--SLCVV-AALYDINQLKIPNWLNLTIAGLFIPAAAVSGLPLEIIGGHLMAG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            + F++ F  FAF I GGGD K++ +  +W G   +  +F F +AI GGI ++ IL VR 
Sbjct: 61  GLAFVVAFGLFAFRIFGGGDAKMIPAVVLWMG-PEAAFAFAFKMAIAGGICAMLILAVRR 119

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGI 151
            T    + G F+   F  K  +PYG+
Sbjct: 120 TTPAEAVPG-FMRAPFQDKASVPYGV 144


>gi|304392386|ref|ZP_07374327.1| peptidase A24A prepilin type IV [Ahrensia sp. R2A130]
 gi|303295490|gb|EFL89849.1| peptidase A24A prepilin type IV [Ahrensia sp. R2A130]
          Length = 181

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 4/153 (2%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           AV  + P C+++A  SDL S  I N    V++  F + A L GM ++ IA+H  V +   
Sbjct: 14  AVLTVFPLCVIYATFSDLLSMKISNLTCGVLVLGFFILAPLSGMGWQAIAIHSSVAVAAL 73

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++   FF+  +MGGGD KL+ + ++W G   + L ++   ++LG ++++ I+ +R     
Sbjct: 74  VMGMSFFSMGVMGGGDAKLIAAVSLWLGLGLT-LPYILAASLLGAVVTLVIVGLRKAKPR 132

Query: 130 IPIF---GMFVPKSFLMKNKIPYGIAISMGGLI 159
           +P        + K    K  IPYG+A+    L+
Sbjct: 133 LPQAFRDWRVMAKVLDRKEGIPYGLALGPAALV 165


>gi|83859355|ref|ZP_00952876.1| pilus assembly protein CpaA [Oceanicaulis alexandrii HTCC2633]
 gi|83852802|gb|EAP90655.1| pilus assembly protein CpaA [Oceanicaulis alexandrii HTCC2633]
          Length = 172

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 2/170 (1%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M+   M+ +   L   F ++ A   D+ S  IPN V   ++  ++L A  LG+ +     
Sbjct: 1   MRAPAMISNIALLGFAFLMLCAVWYDVRSFTIPNWVPGALIAGWVLAAPFLGLSWMDAGF 60

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
            LL GL V  +    +A   +GGGDVKLL + A+WFGW P  L+F+      GG+L+V +
Sbjct: 61  SLLTGLGVLALGMALWAPGWVGGGDVKLLAAGALWFGW-PDGLAFVLIAVAAGGVLAVIL 119

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNK-IPYGIAISMGGLISYPDSYLFKV 169
           + +R + + +PI    +  + L +   +PY IAI+ G L+  P + +F V
Sbjct: 120 VILRQMAHLLPISSDRLGSTALAQGAPVPYAIAIAAGALLVLPQAQMFAV 169


>gi|218530652|ref|YP_002421468.1| peptidase A24A prepilin type IV [Methylobacterium chloromethanicum
           CM4]
 gi|218522955|gb|ACK83540.1| peptidase A24A prepilin type IV [Methylobacterium chloromethanicum
           CM4]
          Length = 165

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 14/155 (9%)

Query: 6   MVFSAVFLIP----PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
           M  SA +L+     PF + +AA+SDL +  I NRV+ ++L +F+L A   GM    +ALH
Sbjct: 1   MSGSAAYLLSCFGFPFLMAYAAVSDLLTMRISNRVTSLVLFTFVLYALADGMMLAELALH 60

Query: 62  LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
           +  G +V    F  FA   +GGGD KL     +W G       +L   ++ GG+L++ IL
Sbjct: 61  IAAGCLVLAAAFVMFARGWIGGGDAKLAAGATLWLG-IEYVAEYLIAASVFGGVLTLVIL 119

Query: 122 TVR-----MITNHIPIFGMFVPKSFLMKNKIPYGI 151
             R     M T  +P F + +  S   +  IPYGI
Sbjct: 120 FARAYPLPMATLRLP-FAVNLHDS---RTGIPYGI 150


>gi|302381758|ref|YP_003817581.1| peptidase A24A prepilin type IV [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192386|gb|ADK99957.1| peptidase A24A prepilin type IV [Brevundimonas subvibrioides ATCC
           15264]
          Length = 170

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 8/153 (5%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           ++ AALSDL +  IPN +S +++  F   AF +G+    + L++ V +   ++    FA 
Sbjct: 16  VIVAALSDLTTMKIPNWISGLLIVGFFPAAFAVGLSPAEVGLNVAVAVGALLVGMGLFAG 75

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR----MITNHIPIFG 134
            I+GGGD K++ +T +W G+  + + FL +  + GG+L + ++  R    +  +  P   
Sbjct: 76  RIIGGGDAKVMAATCLWLGFGGAGM-FLLYTGLFGGLLCLALIAARKSVVLPAHATP--- 131

Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
            +V      +  +PYG+AI  G L ++P S L 
Sbjct: 132 GWVATLMEPRGDLPYGVAICAGALAAFPSSPLL 164


>gi|94497252|ref|ZP_01303824.1| type IV prepilin peptidase, cpaA [Sphingomonas sp. SKA58]
 gi|94423357|gb|EAT08386.1| type IV prepilin peptidase, cpaA [Sphingomonas sp. SKA58]
          Length = 157

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 14/147 (9%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMGG 83
           +D+ S +I NR+++ +     L     G+D +  +A  LL+G IVF++    FA  +MGG
Sbjct: 24  TDMRSRIISNRLNMTVALLAPLWWLACGLDVWPGMATQLLLGAIVFVLFAALFALGMMGG 83

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GDVKLL + A+WF W    ++ +  +A+LGG +++ +L    I                 
Sbjct: 84  GDVKLLGALALWFPWQ-VLMALVMLMAVLGGAVTLVVLIHHRIAKKAG------------ 130

Query: 144 KNKIPYGIAISMGGLISYPDSYLFKVA 170
           + +IPYG+AIS+  L    + YL + A
Sbjct: 131 QPEIPYGVAISLAALWVIGERYLNQFA 157


>gi|304320645|ref|YP_003854288.1| pilus assembly protein prepilin peptidase subunit [Parvularcula
           bermudensis HTCC2503]
 gi|303299547|gb|ADM09146.1| pilus assembly protein prepilin peptidase subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 164

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 8/163 (4%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M  S + L+ P  L  AA+ DL S  IPNRV+  +  ++ L A  +G+ + +    +   
Sbjct: 1   MFSSVISLVYPALLSVAAVYDLTSFKIPNRVTAALAVAWPLCALAVGIPFTMALSSVAFA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVFILTVR 124
             +    F  FA   +GGGDVKLL +T +W G  P+  L F+ +  I GG L+  +L+ R
Sbjct: 61  FGILAAGFALFAIGKLGGGDVKLLAATTLWVG--PALALEFVLWTMIFGGGLAFALLSFR 118

Query: 125 MITNHIPIFGMFVPKSFLMKNK---IPYGIAISMGGLISYPDS 164
            +   +P+  M     F + N+   +PYG+AI+  GL+ +  +
Sbjct: 119 RL--PLPVNVMSTGWLFDLYNRKKDMPYGVAIAASGLMLWSKT 159


>gi|154250687|ref|YP_001411511.1| peptidase A24A prepilin type IV [Parvibaculum lavamentivorans DS-1]
 gi|154154637|gb|ABS61854.1| peptidase A24A prepilin type IV [Parvibaculum lavamentivorans DS-1]
          Length = 187

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 90/160 (56%), Gaps = 11/160 (6%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           P  ++F AL DL +  IPN +SI ++  F L    +G+  + IALH+  GL++  +    
Sbjct: 30  PLAMIFGALWDLTTMTIPNLLSIALVAMFALLVPFVGLALQDIALHVAAGLVMLALGMGL 89

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FA   +GGGD K +++ A+W GW+   L +L   +I GG+L++ +L  R +   +P    
Sbjct: 90  FALGWIGGGDAKFVSAIALWIGWS-ELLGYLLLASIFGGVLTLLLLGFRKMP--LP---S 143

Query: 136 FVPKSFLM-----KNKIPYGIAISMGGLISYPDSYLFKVA 170
           F+ + +L+     K+ IPYG+A++   L+ +  +  FK A
Sbjct: 144 FMHREWLLRLHDRKSGIPYGVALAAAALVMFERTVWFKFA 183


>gi|312115330|ref|YP_004012926.1| peptidase A24A prepilin type IV [Rhodomicrobium vannielii ATCC
          17100]
 gi|311220459|gb|ADP71827.1| peptidase A24A prepilin type IV [Rhodomicrobium vannielii ATCC
          17100]
          Length = 161

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 49/82 (59%)

Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
          P  LV+AA  DL + +IPNR+ +V+   F + A L G+D   IA H    L+V +  +  
Sbjct: 14 PVLLVWAAAVDLLTRVIPNRLVLVLAACFAVFALLAGLDAARIASHAGCALLVLVCAYGL 73

Query: 76 FAFNIMGGGDVKLLTSTAVWFG 97
          FA +++GGGD KLL   ++W G
Sbjct: 74 FAASLLGGGDAKLLAVASLWIG 95


>gi|85373133|ref|YP_457195.1| type IV prepilin peptidase, cpaA [Erythrobacter litoralis HTCC2594]
 gi|84786216|gb|ABC62398.1| type IV prepilin peptidase, cpaA [Erythrobacter litoralis HTCC2594]
          Length = 167

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 20/138 (14%)

Query: 25  SDLFSAMIPNRVS-IVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82
           +DL S  I N ++  + LG+ L   +  G+D +  +A  L V LI F IC   FA   MG
Sbjct: 24  TDLRSRQIGNWLNGAIALGAPLFW-WSSGLDLWPGVAWQLGVALITFAICAGLFAMRWMG 82

Query: 83  GGDVKLLTSTAVWFGWTPS-FLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF-VPKS 140
           GGDVKLLT+ A+W    P+ F + +  +A+LGG+L++             +FGM+ + + 
Sbjct: 83  GGDVKLLTALALWI--APALFFNLIVIMALLGGVLTL-------------LFGMWHLIRR 127

Query: 141 FLMKNKIPYGIAISMGGL 158
              +  IPYG+AIS  GL
Sbjct: 128 QRERLAIPYGVAISAAGL 145


>gi|294012228|ref|YP_003545688.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum
           UT26S]
 gi|292675558|dbj|BAI97076.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum
           UT26S]
          Length = 176

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 84/156 (53%), Gaps = 5/156 (3%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLV 64
           M+   V L   F LV AA+ D+    I N   ++++G  L  A++    +E  I  +  V
Sbjct: 1   MMKDLVLLAVSFVLVAAAVEDMARLRISNIFPLLVIG--LYAAWVAAAGWENDIWRNGTV 58

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            L +F +    FA   MGGGDVKL+++ A+WF W  + + +L +V + GG+L++ ++  R
Sbjct: 59  FLGMFALGCGLFAMRAMGGGDVKLMSACALWFDWAGA-VPWLVYVTVGGGVLALVLMAGR 117

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
            +       G  +   F  K  IPYG+AI++G +++
Sbjct: 118 RLVPQSWREGSSI-ALFDKKGPIPYGVAIALGTIMA 152


>gi|162147489|ref|YP_001601950.1| hypothetical protein GDI_1705 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545596|ref|YP_002277825.1| peptidase A24A prepilin type IV [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786066|emb|CAP55648.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533273|gb|ACI53210.1| peptidase A24A prepilin type IV [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 162

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 82/146 (56%), Gaps = 14/146 (9%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           LV+AAL D+    IP++V +V LG    T  +L   +  I   +LV + VF +CF  + F
Sbjct: 16  LVYAALHDVAVRTIPDQV-VVALGGLGATIAIL---HGHIVGSILVAICVFGLCFAIWWF 71

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFL-SFLFFVAILGGILSVFILTVRMITNHIPI----F 133
             +GGGDVKLL++ ++ F   P+ + S++  +A+ GG+L+ F L VR      P+    F
Sbjct: 72  GAIGGGDVKLLSAASLLF--PPAAVPSWILTIAMSGGVLAGFYLMVRHRVTVGPVRHGCF 129

Query: 134 GMFV-PKSFLMKNK--IPYGIAISMG 156
           G  V  + + M+    +PY +AI+ G
Sbjct: 130 GRIVRSERWRMRRGGPLPYAVAIAAG 155


>gi|220918101|ref|YP_002493405.1| peptidase A24A prepilin type IV [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955955|gb|ACL66339.1| peptidase A24A prepilin type IV [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 151

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 21/154 (13%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF--- 75
           +  AA SDL S  IPN +S        LT  + G+      L    GL+   IC      
Sbjct: 1   MAVAAASDLASRRIPNALS--------LTVAVAGLAASTGPLQAASGLVASAICLALMLP 52

Query: 76  -FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT------VRMI-T 127
            +    +GGGDVKLL + A W      F+ F   VA+ GG+L++ +L       +R++  
Sbjct: 53  LWRRRAIGGGDVKLLAAAAAWVRLEHLFV-FGLAVALCGGLLALIVLARASAAELRLVRA 111

Query: 128 NHIPIFGMFVPK-SFLMKNKIPYGIAISMGGLIS 160
           N +    M  P  +      IPYG+AI++G  I+
Sbjct: 112 NAVASLAMSRPAVARSAGTSIPYGVAIALGAAIA 145


>gi|197106457|ref|YP_002131834.1| Flp pilus assembly protein, protease CpaA [Phenylobacterium
           zucineum HLK1]
 gi|196479877|gb|ACG79405.1| Flp pilus assembly protein, protease CpaA [Phenylobacterium
           zucineum HLK1]
          Length = 164

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 8/141 (5%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            LV+AA SD F  +IPNRV  ++ G++LL    L +   +  L   VG+    +    FA
Sbjct: 19  SLVWAAASDFFRYLIPNRVCALIAGAYLLAFPALALSAWVGGLG--VGIAALALGTILFA 76

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLS-FLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
              +GGGDVKL  + ++W G  P+ LS F F  ++ G  L+V +L+        P     
Sbjct: 77  RGWVGGGDVKLAAALSLWAG--PALLSGFAFVTSLAGAALAVAMLSPLRRLMPRPAGETL 134

Query: 137 VPKSFLMKNKIPYGIAISMGG 157
                 ++  +P+G+ ++ GG
Sbjct: 135 AEG---LRQPMPFGVPLAAGG 152


>gi|296284550|ref|ZP_06862548.1| type IV prepilin peptidase, cpaA [Citromicrobium bathyomarinum
           JL354]
          Length = 164

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 71/145 (48%), Gaps = 24/145 (16%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL-----IALHLLVGLIVFIICFC 74
           V AA++DL S  I N ++    G   L A L      L     +AL   V +  F I   
Sbjct: 19  VTAAITDLRSRRIANWLT----GGVALGAPLFWWASSLSLWPGVALQFAVAVAAFAILAV 74

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
            FA   MGGGDVKLLT+ A+W    P FL  +F +AILGG+L++              FG
Sbjct: 75  LFALRAMGGGDVKLLTALALWIAPLP-FLQLVFVMAILGGVLTL-------------AFG 120

Query: 135 MF-VPKSFLMKNKIPYGIAISMGGL 158
            + + +    +  IPYG+AIS  GL
Sbjct: 121 AWHIMRRRKERLAIPYGVAISAAGL 145


>gi|307294435|ref|ZP_07574279.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1]
 gi|306880586|gb|EFN11803.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1]
          Length = 176

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 77/142 (54%), Gaps = 5/142 (3%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVGLIVFIICFCFFAF 78
           + AA+ D+    I N   ++++G  L  A++    +E  I  +  V L +F +    FA 
Sbjct: 15  IAAAVEDMARLRISNIFPLLVIG--LYAAWVAAAGWENDIWRNGTVFLGMFALGCGLFAL 72

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
             MGGGD+KL+++ A+WF W    + +L +V + GG+L++ ++  R +       G  + 
Sbjct: 73  RWMGGGDIKLMSTCALWFDWQ-GVVPWLVYVTVGGGVLALVLMIGRRLVPQAVREGSSI- 130

Query: 139 KSFLMKNKIPYGIAISMGGLIS 160
             F  K  IPYG+AI++G +++
Sbjct: 131 ALFDKKGPIPYGVAIALGTIMA 152


>gi|238762405|ref|ZP_04623376.1| hypothetical protein ykris0001_26500 [Yersinia kristensenii ATCC
           33638]
 gi|238699390|gb|EEP92136.1| hypothetical protein ykris0001_26500 [Yersinia kristensenii ATCC
           33638]
          Length = 127

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 20/143 (13%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L+F   SD+    I N   I    +  +   +LG+     A+++++ L   +I +  F F
Sbjct: 3   LLFVCYSDIRHRTISNNFII----TIAINTVVLGLATHQ-AVNIIIPLSALLIGYIIFYF 57

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           +++GGGDVKL+T        T S L+F+ + AI+GG+              + I GMFV 
Sbjct: 58  DLIGGGDVKLITVLLFALTTTQS-LNFILYTAIMGGV--------------VMIIGMFVN 102

Query: 139 KSFLMKNKIPYGIAISMGGLISY 161
           +  + +  +PY +AIS G L+S+
Sbjct: 103 REDIKQRGVPYAVAISAGFLLSF 125


>gi|149186253|ref|ZP_01864567.1| type IV prepilin peptidase, cpaA [Erythrobacter sp. SD-21]
 gi|148830284|gb|EDL48721.1| type IV prepilin peptidase, cpaA [Erythrobacter sp. SD-21]
          Length = 237

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 2/94 (2%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMGG 83
           +DL S  I N++++ +     L  +  G+D +  + + L +    F IC  FFA   MGG
Sbjct: 24  TDLKSRTIGNKLNLAIAAGAPLFWWTTGLDLWPGVGIQLGIAAATFAICTLFFAIRQMGG 83

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
           GDVKLLT+ A+WF  T +FL  +  +A+LG +L+
Sbjct: 84  GDVKLLTALALWFPPT-NFLGLVLVMAMLGWVLT 116


>gi|153949206|ref|YP_001399596.1| type IV prepilin peptidase family protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960701|gb|ABS48162.1| type IV prepilin peptidase family [Yersinia pseudotuberculosis IP
           31758]
          Length = 132

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 28/146 (19%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF--- 75
           L+F   SD+   +I N+  I    S    A +L     ++  H  V +I+ I+   F   
Sbjct: 8   LLFVCYSDIRHRIISNKFVI----SIAFNAIIL-----ILVTHHTVSIIIPIVALFFGYI 58

Query: 76  -FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
            F FN+MGGGDVKL+T   +      S L+F+ + AI+GG+              + + G
Sbjct: 59  IFHFNVMGGGDVKLITVLLLALTAEQS-LNFIIYTAIMGGV--------------VMLVG 103

Query: 135 MFVPKSFLMKNKIPYGIAISMGGLIS 160
           + + ++ + K  IPY IAI+ G L+S
Sbjct: 104 LLINRADIQKRGIPYAIAITAGFLLS 129


>gi|326388866|ref|ZP_08210448.1| type IV prepilin peptidase, cpaA [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326206466|gb|EGD57301.1| type IV prepilin peptidase, cpaA [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 161

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 19/104 (18%)

Query: 58  IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS--FLSFLFFVAILGGI 115
           +AL L + +  F +    FA   MGGGDVKLLT+ A+W    P   FL  L  +A+ GG+
Sbjct: 58  VALQLALAVGTFAVLAGLFALRAMGGGDVKLLTALALWL---PVVLFLRLLLIMALAGGL 114

Query: 116 LSVFILTVRMITNHIPIFGMF-VPKSFLMKNKIPYGIAISMGGL 158
           L++             + GM+ V +    + +IPYG+AI+  GL
Sbjct: 115 LTI-------------VLGMWHVTRRRKNRLQIPYGVAIAGAGL 145


>gi|326797325|ref|YP_004315145.1| peptidase A24A prepilin type IV [Marinomonas mediterranea MMB-1]
 gi|326548089|gb|ADZ93309.1| peptidase A24A prepilin type IV [Marinomonas mediterranea MMB-1]
          Length = 182

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 26/166 (15%)

Query: 16  PFCLVFAAL----SDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIAL-----HLLV 64
           P  L FA+L    +DLF   I NR+ +++L  +L++A   L+  D    AL     +  +
Sbjct: 7   PVILTFASLWVIVTDLFYRRIHNRLVLMLLVLWLVSAALSLITSDENRSALLADFGYTSL 66

Query: 65  GLI-VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
           G + V ++ FC F    MG GDVKL++   +W G     L+FL   A+ GG+L++F+  +
Sbjct: 67  GAVGVLLVGFCLFLVGQMGAGDVKLMSILCLWVG-VEQQLTFLVVTALAGGVLALFLPFI 125

Query: 124 RMI-----------TNHIPIFGMFVPKSFLMK--NKIPYGIAISMG 156
            +I           +   P F +  P +F  +    +PYG+AIS+G
Sbjct: 126 SLIELAGAKAILQLSERYPSFKIPAPIAFSREGVKGLPYGLAISVG 171


>gi|227818613|ref|YP_002822584.1| CpaA2 pilus assembly protein [Sinorhizobium fredii NGR234]
 gi|227337612|gb|ACP21831.1| CpaA2 pilus assembly protein [Sinorhizobium fredii NGR234]
          Length = 170

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 6/157 (3%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            + +A + D+ +  I NR+   +L +F + A L G+D  +I   +LV   V    F FFA
Sbjct: 17  TMTYAGIKDVMTMTISNRLVGFLLVAFAVLAPLAGVDLPMIWSSILVASAVLAFTFTFFA 76

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF---G 134
              +GGGD KLL    +W G     L F+   ++LG +L++ ++  R +   +P+     
Sbjct: 77  LGWIGGGDAKLLPVAVLWLG-AGLALPFVVCASVLGAVLTLSLMQFRKMP--LPVLLQKR 133

Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
            +  +    +  IPYG A++   L+  P+S+ F   L
Sbjct: 134 AWSSRLHTPQTGIPYGAAMAPAALLLLPESHWFAALL 170


>gi|16263310|ref|NP_436103.1| CpaA2 pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|14523989|gb|AAK65515.1| CpaA2 prepilin peptidase [Sinorhizobium meliloti 1021]
          Length = 170

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           FL+    + +A + D+ +  I NRV + ++ +F + A   G++   +   ++V   V   
Sbjct: 11  FLLFAGAMTYAGIRDVATMTISNRVVVFLVIAFAILAPAAGLNLATVMSSVVVASAVLAC 70

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
            F  FA   +GGGD KLL    +W G     L F+ + +++G  L+V +L +R +   + 
Sbjct: 71  TFVLFAAGWIGGGDAKLLPVAVLWLG-ADLALPFILYTSVIGAALTVGLLQLRRVPLPLA 129

Query: 132 IFGMFVPKSFLMKNK-IPYG 150
           +      K  L +   IPYG
Sbjct: 130 LKKNAWAKRLLDRETGIPYG 149


>gi|36958869|gb|AAQ87294.1| CpaA [Sinorhizobium fredii NGR234]
          Length = 194

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 6/153 (3%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            + +A + D+ +  I NR+   +L +F + A L G+D  +I   +LV   V    F FFA
Sbjct: 41  TMTYAGIKDVMTMTISNRLVGFLLVAFAVLAPLAGVDLPMIWSSILVASAVLAFTFTFFA 100

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF---G 134
              +GGGD KLL    +W G     L F+   ++LG +L++ ++  R +   +P+     
Sbjct: 101 LGWIGGGDAKLLPVAVLWLG-AGLALPFVVCASVLGAVLTLSLMQFRKMP--LPVLLQKR 157

Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
            +  +    +  IPYG A++   L+  P+S+ F
Sbjct: 158 AWSSRLHTPQTGIPYGAAMAPAALLLLPESHWF 190


>gi|251789644|ref|YP_003004365.1| peptidase A24A prepilin type IV [Dickeya zeae Ech1591]
 gi|247538265|gb|ACT06886.1| peptidase A24A prepilin type IV [Dickeya zeae Ech1591]
          Length = 185

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 82/172 (47%), Gaps = 25/172 (14%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-----TAFLLGMDYELIA-- 59
           V SA  L+   CLV+   SDL    IPNR  + +L  +L      TA + G    L    
Sbjct: 7   VQSAYNLLLVVCLVWCIGSDLLLRRIPNRAVLALLLGWLALSALATAGVTGPLPRLSGSL 66

Query: 60  LHLLVG-LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS- 117
           L  L G L+VF++ F  F    +G GDVKL++   +W G+    +SF+   AI GGIL+ 
Sbjct: 67  LQALPGALLVFVVGFLLFLTGRLGAGDVKLMSVLCLWVGYGHQ-ISFVMVTAIAGGILAL 125

Query: 118 -----------VFILTVRMITNHIPIFGMFVPK--SFLMKNKIPYGIAISMG 156
                      V +L  RM  NH+    +  P   S  +   IPYGIAI+ G
Sbjct: 126 SLPLLNTCSTGVALLIERM--NHLLKINITPPPMLSAELSQGIPYGIAIAFG 175


>gi|167836691|ref|ZP_02463574.1| peptidase A24A, prepilin type IV [Burkholderia thailandensis
           MSMB43]
          Length = 166

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
           A+SDL    +PN     +   + + AFL G     +A H + G I F +    + F  + 
Sbjct: 17  AVSDLRFRRLPNLSVAALAALYCVHAFLAGSHAPELAAHAVAGGIAFAVAAVMWRFGWIA 76

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
           GGD K L +   W+          F V++ G ++ + +LT   +   +    +++  S  
Sbjct: 77  GGDAK-LAAVVFWWAGLAHAAGVFFTVSVCGLVIGLAVLTAGAMLRRVAHAPLWL-TSLA 134

Query: 143 MKNKIPYGIAISMGGL 158
               +PYGIA+++GGL
Sbjct: 135 PSRGVPYGIALALGGL 150


>gi|150377242|ref|YP_001313837.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419]
 gi|150031789|gb|ABR63904.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419]
          Length = 170

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           + +A + D+ +  I NR+ + ++ +F + A  +G+ ++ I   ++V  +V    F  FA 
Sbjct: 18  MTYAGIRDVATMTISNRLVVFLVIAFAVLAPAVGLSFDTITSSIVVASVVLACTFVLFAA 77

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
             +GGGD KLL    +W G     L F+ + +++G  L++ +L +R     + +      
Sbjct: 78  GWIGGGDAKLLPVAVLWLG-ADLALPFVLYTSVIGAALTLGLLQLRRAPLPLVLKKNAWS 136

Query: 139 KSFLMKNK-IPYG 150
           K  L +   IPYG
Sbjct: 137 KRLLDRETGIPYG 149


>gi|154244239|ref|YP_001415197.1| peptidase A24A prepilin type IV [Xanthobacter autotrophicus Py2]
 gi|154158324|gb|ABS65540.1| peptidase A24A prepilin type IV [Xanthobacter autotrophicus Py2]
          Length = 158

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 11/144 (7%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +D+   +IPN V   +L  F   A L  +    ++L LLV + V  + F  FA N++G G
Sbjct: 22  TDIARRIIPNTVIAALLIGFATLAILTPLPD--LSLRLLVAVAVTALGFSLFAENVVGAG 79

Query: 85  DVKLLTSTAVWFGWTPSFLS-FLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           D KL     +W    P+ L  F+    ++GG+L++  L +    + + +  + VP     
Sbjct: 80  DAKLAGVLMLWT--EPAQLPLFVLACGLIGGVLTLAALAMHRPADRL-VGTIAVP----- 131

Query: 144 KNKIPYGIAISMGGLISYPDSYLF 167
              IPYG+A++  GL+ +P S L 
Sbjct: 132 GQTIPYGVALAGAGLLLHPYSSLL 155


>gi|332162952|ref|YP_004299529.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318604225|emb|CBY25723.1| type IV prepilin peptidase TadV/CpaA [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667182|gb|ADZ43826.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862297|emb|CBX72458.1| hypothetical protein YEW_HH31900 [Yersinia enterocolitica W22703]
          Length = 128

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 24/145 (16%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG--MDYELIALHLLVGLIVFIICFCFF 76
           L+F   SD+    I N+  I    +  + A  LG  M++   A+++++     +I +  F
Sbjct: 4   LLFVCYSDIRYRTISNKFII----TIAINAVALGFTMNH---AINIVIPFSALLIGYSLF 56

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
            F+++GGGDVKL+T   +      S L F+ + A++GG+              + I GM 
Sbjct: 57  HFHLIGGGDVKLITVLLLALTTAKS-LDFILYTAMMGGV--------------VMIIGML 101

Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161
           V +  + +  +PY +AIS G L+S+
Sbjct: 102 VNREDIQQRGVPYAVAISAGFLLSF 126


>gi|238789146|ref|ZP_04632934.1| hypothetical protein yfred0001_29860 [Yersinia frederiksenii ATCC
           33641]
 gi|238722678|gb|EEQ14330.1| hypothetical protein yfred0001_29860 [Yersinia frederiksenii ATCC
           33641]
          Length = 127

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 20/136 (14%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           SD+    + NR  I    +  L    LG+      +++++ L   ++ +  F FN +GGG
Sbjct: 9   SDILHRTVSNRFII----TITLNTIALGLTIHN-TVNIIIPLCSLLVGYIIFHFNFIGGG 63

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVKL+T+         S L F+ + AI+GG+    ++T+ M+ N + I           K
Sbjct: 64  DVKLITALLFSLNLQES-LDFIIYTAIMGGV----VMTIGMLINQVDI----------KK 108

Query: 145 NKIPYGIAISMGGLIS 160
             +PY +AIS G L+S
Sbjct: 109 RGVPYAVAISGGFLLS 124


>gi|307304371|ref|ZP_07584122.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C]
 gi|306902573|gb|EFN33167.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C]
          Length = 170

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           FL+    + +A + D+ +  I NR+ + ++ +F + A   G++   +   ++V   V   
Sbjct: 11  FLLFAGAMTYAGIRDVATMTISNRLVVFLVIAFAILAPAAGLNLATVMSSVVVASAVLAC 70

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
            F  FA   +GGGD KLL    +W G     L F+ + +++G  L+V +L +R +   + 
Sbjct: 71  TFVLFAAGWIGGGDAKLLPVAVLWLG-ADLALPFILYTSVIGAALTVGLLQLRRVPLPLA 129

Query: 132 IFGMFVPKSFLMKNK-IPYG 150
           +      K  L +   IPYG
Sbjct: 130 LKKNAWAKRLLDRETGIPYG 149


>gi|255597443|ref|XP_002536775.1| conserved hypothetical protein [Ricinus communis]
 gi|223518589|gb|EEF25609.1| conserved hypothetical protein [Ricinus communis]
          Length = 169

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 23  ALSDLFSAMIPNRVSIVMLGS-FLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81
           A+ D+ +  +P R S++ LG  F   A ++      +  H+ +  +VF IC   FA   M
Sbjct: 20  AVVDVRARRLPTR-SVLALGLLFFADALVVHRSASDVLSHVALAGVVFAICAVLFALGWM 78

Query: 82  GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
           GGGD KL  +  +W G  P     L  +++ G ++++  L  + +        +     F
Sbjct: 79  GGGDAKLAAAIFLWAG-LPLSWPALVLISVSGTVVALVSLATQRLDPQHRARAVRALAMF 137

Query: 142 LMKNKIPYGIAISMGG 157
                +PYG+A++ GG
Sbjct: 138 SGTRGVPYGVALAAGG 153


>gi|307318078|ref|ZP_07597514.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83]
 gi|306896119|gb|EFN26869.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83]
          Length = 170

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 2/140 (1%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           FL+    + +A + D+ +  I NR+ + ++ +F + A   G+    +   ++V   V   
Sbjct: 11  FLLFAGAMTYAGIRDVATMTISNRLVVFLVIAFAILAPAAGLSLATVMSSVVVASAVLAC 70

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
            F  FA   +GGGD KLL    +W G     L F+ + +++G  L+V +L +R +   + 
Sbjct: 71  TFVLFAAGWIGGGDAKLLPVAVLWLG-ADLALPFILYTSVIGAALTVGLLQLRRVPLPLA 129

Query: 132 IFGMFVPKSFLMKNK-IPYG 150
           +      K  L +   IPYG
Sbjct: 130 LKKNAWAKRLLDRETGIPYG 149


>gi|123443819|ref|YP_001007790.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090780|emb|CAL13662.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 140

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 27/163 (16%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG--MDYELI 58
           M    ++ SA+ ++    L+F   SD+    I N+  I    +  + A  LG  M++   
Sbjct: 1   MDTLNILISALLMLQ---LLFVCYSDIRYRTISNKFII----TIAINALALGFTMNH--- 50

Query: 59  ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
            +++++     +I +  F F+++GGGDVKL+T   +      S L F+ + A++GG+   
Sbjct: 51  TVNIVIPFSALLIGYSLFHFHLIGGGDVKLITVLLLALTTAKS-LDFILYTAMMGGV--- 106

Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                      + I GM V +  + +  +PY +AIS G L+S+
Sbjct: 107 -----------VMIIGMLVNREDIQQRGVPYAVAISAGFLLSF 138


>gi|220923696|ref|YP_002498998.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
           2060]
 gi|219948303|gb|ACL58695.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
           2060]
          Length = 171

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 81/152 (53%), Gaps = 6/152 (3%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
           F +++A ++DL +  I N + +V+L  + + A L G     I     +   V +  F FF
Sbjct: 17  FTVIYAGITDLTTMKIRNGLVLVLLLGYGILAPLAGFSLPQIGWSAALSFGVLLAAFIFF 76

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF--- 133
           AF  +GGGD K   +T +W G   S + +L + A+LGG+ ++ +L  R  T  +P F   
Sbjct: 77  AFGWIGGGDAKFAAATVLWLGIDHSPV-YLVYTALLGGLFTLLLLQFR--TRALPAFLNG 133

Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
             ++ +     + +PYG+A+++  L+ +P ++
Sbjct: 134 STWLVRLHSPTSGVPYGVAMALAALVVFPQTH 165


>gi|85707704|ref|ZP_01038770.1| putative type IV prepilin peptidase, cpaA [Erythrobacter sp. NAP1]
 gi|85689238|gb|EAQ29241.1| putative type IV prepilin peptidase, cpaA [Erythrobacter sp. NAP1]
          Length = 165

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 37/155 (23%)

Query: 25  SDLFSAMIPNRVSIVML----------GSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
           +D+ S  I N ++I +           GS L    +  + + L+   +LVG     + + 
Sbjct: 24  TDIRSRTISNWLNIAIAAGAPVFWWASGSSLWPDVVWQIGFALVVCAILVG-----VAYI 78

Query: 75  FFAFNI--MGGGDVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSV-FILTVRMITNHI 130
            +  NI  +GGGD+KLL + A+WF  TP S+L  L+++A+ GG++++ F+L +       
Sbjct: 79  GYRLNIVILGGGDIKLLGALALWF--TPMSYLGMLWYMALCGGVMAILFVLRL------- 129

Query: 131 PIFGMFV-PKSFLMKNKIPYGIAISMGG-LISYPD 163
               MF+ PK+   +  +PYG+AI+ G  L+ YP 
Sbjct: 130 ----MFLRPKT---RGVLPYGVAIAGGALLVLYPK 157


>gi|51597668|ref|YP_071859.1| hypothetical protein YPTB3370 [Yersinia pseudotuberculosis IP
           32953]
 gi|51590950|emb|CAH22608.1| Putative membrane protein [Yersinia pseudotuberculosis IP 32953]
          Length = 140

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 28/142 (19%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC----FC 74
           L+F   SD+   +I N+  I    S    A +L +      +H  V +I+ I+     + 
Sbjct: 16  LLFVCYSDIRHRIISNKFVI----SIAFNAIILSL-----VMHHTVSIIIPIVALFIGYI 66

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
            F FN+MGGGDVKL+T+  +      S L+F+ + A++GGI+ V               G
Sbjct: 67  IFHFNVMGGGDVKLITALLLALTAEQS-LNFIIYTAVMGGIVMV--------------VG 111

Query: 135 MFVPKSFLMKNKIPYGIAISMG 156
           + + +  + K  +PY +AI+ G
Sbjct: 112 LLINRVDIQKRGVPYAVAITAG 133


>gi|238759120|ref|ZP_04620289.1| hypothetical protein yaldo0001_3380 [Yersinia aldovae ATCC 35236]
 gi|238702668|gb|EEP95216.1| hypothetical protein yaldo0001_3380 [Yersinia aldovae ATCC 35236]
          Length = 130

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 15/87 (17%)

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           +I +  F   ++GGGDVKL+T   +    T S L F+ + AI+GG               
Sbjct: 52  LIGYIIFHLKLIGGGDVKLITVLLLALTATQS-LDFILYTAIMGG--------------A 96

Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMG 156
           + I G+FV K  + +  +PY +AIS+G
Sbjct: 97  VMIIGLFVNKKDIQQRGVPYAVAISLG 123


>gi|238750894|ref|ZP_04612391.1| hypothetical protein yrohd0001_16460 [Yersinia rohdei ATCC 43380]
 gi|238710808|gb|EEQ03029.1| hypothetical protein yrohd0001_16460 [Yersinia rohdei ATCC 43380]
          Length = 140

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 20/136 (14%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           SD+   +I N+  + +  + L+ +F+    Y  +++  ++ LI  +  +  F FN +GGG
Sbjct: 22  SDIRYRIISNKFVVTIAITALVLSFI---TYNTVSI--VIPLIALLTGYIIFHFNFIGGG 76

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVKL+    +      S L+F+ + AI+GG+              + I GM + +  + +
Sbjct: 77  DVKLIAVLLLTLNSGQS-LNFILYTAIMGGV--------------VMIIGMLINRDDIQQ 121

Query: 145 NKIPYGIAISMGGLIS 160
             +PY +AIS G L+S
Sbjct: 122 RGVPYAVAISGGFLLS 137


>gi|209515949|ref|ZP_03264810.1| peptidase A24A prepilin type IV [Burkholderia sp. H160]
 gi|209503607|gb|EEA03602.1| peptidase A24A prepilin type IV [Burkholderia sp. H160]
          Length = 161

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 12/149 (8%)

Query: 18  CLVFAALS--DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           CLV A+L+  D+ S  +P R  +++   + + A + G+    +A HL    I F +    
Sbjct: 10  CLVLASLAVGDIRSRRLPTRAVLLVACLYGVDAAVTGVSIVSLAAHLGAAAIGFALFALL 69

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFL----SFLFFVAILGGILSVFILTVRMITNHIP 131
           F    MGGGDVKL  +  +W G  P++     S + F  ++ G++++ +   R    H  
Sbjct: 70  FRCGWMGGGDVKLAAAVFLWAG--PAYAWPVFSIVSFCGLVLGLMALIMGLFRRHATHTF 127

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
              M           +PYG+A+++GG+ +
Sbjct: 128 RASM----QLASPRGVPYGVALALGGIAA 152


>gi|153834037|ref|ZP_01986704.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio harveyi
           HY01]
 gi|148869592|gb|EDL68582.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio harveyi
           HY01]
          Length = 162

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 19  LVFAALSDLFSAMIPNRVSIVML----GSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
           L+   +SD     IPN+  +++L     +    A   G+D      HL  GL+ F  CF 
Sbjct: 11  LIAIGVSDAQKHRIPNKAVLLLLTAVTANLAFNANSDGLD------HLYGGLVTFAACFV 64

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
            + F +M GGDVKLL     W G + +       + + GG++ +F L + + ++   +  
Sbjct: 65  LYLFKVMAGGDVKLLAVIGAWLGLS-NIGEATVGIILAGGVVGLFYLALYVCSSTTSLTE 123

Query: 135 MFVPKSFLMKNKIP 148
            F  K + ++   P
Sbjct: 124 QF--KGYCLEKVTP 135


>gi|119566855|gb|ABL84263.1| TadV [Yersinia ruckeri]
          Length = 140

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 22/137 (16%)

Query: 21  FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80
           +A  +D+   +I N + +    S L TA      Y   ++ L+  LI+  I F  F F +
Sbjct: 18  WACYTDIRYRIIGNDLIV----SMLFTAMAFSFSYRG-SISLIFPLIILTIGFIIFIFGL 72

Query: 81  MGGGDVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
           +GGGDVK++T  A     TP     F+ + AI+GG+              + I G+ + +
Sbjct: 73  IGGGDVKMITVLACTL--TPMQTYHFITYTAIMGGV--------------VMIIGLVISR 116

Query: 140 SFLMKNKIPYGIAISMG 156
           S + +  +PYG+AI+ G
Sbjct: 117 SDIKERGVPYGVAIASG 133


>gi|27378602|ref|NP_770131.1| hypothetical protein blr3491 [Bradyrhizobium japonicum USDA 110]
 gi|27351750|dbj|BAC48756.1| blr3491 [Bradyrhizobium japonicum USDA 110]
          Length = 171

 Score = 47.4 bits (111), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 31/156 (19%)

Query: 21  FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL-----IALHLLVGLIVFIICFCF 75
           + A  D+ + +I N + +V+       AFL G+  +L     IA  L+   I+F++ F  
Sbjct: 21  YVATIDVATRLIRNEICLVL-------AFL-GIVTQLPNAIQIAESLIAAAILFLLLFVL 72

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           +    +GGGDVKLLT+ A+ F  T   +  L   A+ GGIL++  L +R+    +P   +
Sbjct: 73  YTRGGIGGGDVKLLTALAIGFPLT-GVIQLLTVTALAGGILALVHLLMRL----LPYPRL 127

Query: 136 FVPKSFLMKN-------------KIPYGIAISMGGL 158
               S LM+               +PYG+A++ GG+
Sbjct: 128 APAGSSLMRRVYAVERWRHLRHAPLPYGVAVACGGI 163


>gi|238782883|ref|ZP_04626912.1| hypothetical protein yberc0001_35150 [Yersinia bercovieri ATCC
           43970]
 gi|238716306|gb|EEQ08289.1| hypothetical protein yberc0001_35150 [Yersinia bercovieri ATCC
           43970]
          Length = 140

 Score = 47.4 bits (111), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 20/136 (14%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           SD+   +I NR  + +  + L   F     ++   + +++ L   +  +  F F ++GGG
Sbjct: 22  SDIRHRIISNRFIMTIAINTLALGF-----FQYHRVSIIIPLFALVTGYILFNFKLIGGG 76

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVKL+T   +      S L+F+ + AI+GG+              + I GM + ++ + +
Sbjct: 77  DVKLITVLLLALTAEQS-LNFILYTAIMGGV--------------VMIIGMLINRADIQQ 121

Query: 145 NKIPYGIAISMGGLIS 160
             +PY +AI+ G L+S
Sbjct: 122 RGVPYAVAITGGFLLS 137


>gi|52425836|ref|YP_088973.1| hypothetical protein MS1781 [Mannheimia succiniciproducens MBEL55E]
 gi|52307888|gb|AAU38388.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 166

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 24/148 (16%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           ++LI    L++ + +D+ S +I NRV I +  + +  ++L    YE   + +L G I   
Sbjct: 31  LYLIAVLQLIYLSWTDIKSRIIGNRVIISLFFTMVALSWL---KYE--QVFVLQGAIGLA 85

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTP--SFLSFLFFVAILGGILSVFILTVRMITN 128
           +CF  F   +MGGGD KL+   AV     P    +SF F  A+ G +L            
Sbjct: 86  VCFILFMLKVMGGGDAKLI---AVLMLSIPPAQLISFFFLTAVFGLLL------------ 130

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMG 156
              I G    +  + +  +PYG+AIS G
Sbjct: 131 --IIIGWLFFRQSIKQKGLPYGVAISSG 156


>gi|103486619|ref|YP_616180.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256]
 gi|98976696|gb|ABF52847.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256]
          Length = 162

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 20/161 (12%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--GMD-YELIALHLLVGLIVFIICFCF 75
           ++ AA+SD+ S  I N +++ M  + L   F +  G+  +  + +     L+VF++    
Sbjct: 18  MIAAAVSDIRSRTISNELNVAM--AILAVPFWVVSGLTLWPDVPIQFGAALLVFLVFALL 75

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS-VFILTVRMITNHIPIFG 134
           FA   MGGGDVK++ +  +W    P  L  L  +AI GGILS + ++ +++  +  P+  
Sbjct: 76  FAIGAMGGGDVKMICAVMLWIP-LPLVLPMLMVMAIGGGILSLIMLIHMKLRPSERPV-- 132

Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
                      ++PYG+AI+  GL +    YL +   +GLS
Sbjct: 133 -----------EVPYGVAIAAAGLWALHQHYLNQFQAIGLS 162


>gi|186896806|ref|YP_001873918.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis PB1/+]
 gi|186699832|gb|ACC90461.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis PB1/+]
          Length = 140

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 15/86 (17%)

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           I +  F FN+MGGGDVKL+T+  +      S L+F+ + A++GGI              +
Sbjct: 63  IGYIIFHFNVMGGGDVKLITALLLALTAEQS-LNFIIYTAVMGGI--------------V 107

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMG 156
            + G+ + +  + K  +PY +AI+ G
Sbjct: 108 MVVGLLINRVDIQKRGVPYAVAITAG 133


>gi|110632967|ref|YP_673175.1| peptidase A24A, prepilin type IV [Mesorhizobium sp. BNC1]
 gi|110283951|gb|ABG62010.1| peptidase A24A, prepilin type IV [Chelativorans sp. BNC1]
          Length = 170

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 56/107 (52%), Gaps = 1/107 (0%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            +++A + D+ +  I NR+ +++  ++++ A L G+  + +        ++    F  FA
Sbjct: 17  TMIYAGIKDVATMTITNRLVLLLAAAYVVLAPLAGLGVDEMLAAAAAASLMLAGTFLLFA 76

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
              +GGGD KL     +W G     L ++F+V++ G +L++ ++  R
Sbjct: 77  LGWIGGGDAKLAAVAVLWLG-ADQTLPYIFYVSVAGALLTLALIQFR 122


>gi|238755448|ref|ZP_04616788.1| Flp pilus assembly protein, protease CpaA [Yersinia ruckeri ATCC
           29473]
 gi|238706289|gb|EEP98666.1| Flp pilus assembly protein, protease CpaA [Yersinia ruckeri ATCC
           29473]
          Length = 104

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 15/98 (15%)

Query: 59  ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
           ++ L+  LI+  I F  F F ++GGGDVK++T  A       ++  F+ + AI+GG+   
Sbjct: 15  SISLIFPLIILTIGFIIFIFGLIGGGDVKMITVLACTLTPMQTY-HFITYTAIMGGV--- 70

Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
                      + I G+ + +S + +  +PYG+AI+ G
Sbjct: 71  -----------VMIIGLVISRSDIKERGVPYGVAIASG 97


>gi|144898051|emb|CAM74915.1| membrane protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 155

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 17/141 (12%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            LV A++SD+ +  I +R S+ ++ +F+L     G   + +A H+   + VF      FA
Sbjct: 19  ALVDASISDVRALRIADRDSVAVVAAFILLGAN-GWPVQELAWHVAAAVAVFAAGAALFA 77

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
             + GGGDVKL  + A+  G+      FLF +A++GGI+++ +L +R             
Sbjct: 78  LGVWGGGDVKLCAALALLTGFV-GLPRFLFVMAMVGGIVALAVLALR------------- 123

Query: 138 PKSFLMKNKIPYGIAISMGGL 158
                   ++PYG+AI+  G+
Sbjct: 124 --GRAAGGQVPYGLAIAAAGM 142


>gi|328474267|gb|EGF45072.1| hypothetical protein VP10329_16210 [Vibrio parahaemolyticus 10329]
          Length = 162

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 11/118 (9%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L+   +SD     IPN+  +++L    +TA +L      +  H   GL+ F +CF  +  
Sbjct: 11  LIAIGVSDAQKHRIPNKAVLLLL--VAVTANVLYSPSVSLLDHAYGGLVAFAVCFALYLV 68

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI----LGGILSVFILTVRMITNHIPI 132
             M GGDVKLL     W G     LS L+  +I     GGI+ +F L + + +  + +
Sbjct: 69  KAMAGGDVKLLAVIGTWLG-----LSNLWEASIGIILAGGIVGIFYLMLHIASTSVAL 121


>gi|238796998|ref|ZP_04640502.1| hypothetical protein ymoll0001_34110 [Yersinia mollaretii ATCC
           43969]
 gi|238719258|gb|EEQ11070.1| hypothetical protein ymoll0001_34110 [Yersinia mollaretii ATCC
           43969]
          Length = 124

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 15/84 (17%)

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
           +  F FN++GGGDVKL+T   +      S L F+ + AI+GG+              + I
Sbjct: 49  YIIFHFNLIGGGDVKLITVLLLTLTPGQS-LDFILYTAIMGGV--------------VMI 93

Query: 133 FGMFVPKSFLMKNKIPYGIAISMG 156
            GM + +S + +  +PY +AIS+G
Sbjct: 94  IGMLINRSDIQQRGVPYAVAISIG 117


>gi|28899196|ref|NP_798801.1| hypothetical protein VP2422 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361566|ref|ZP_05774593.1| peptidase, A24 family [Vibrio parahaemolyticus K5030]
 gi|260876723|ref|ZP_05889078.1| peptidase, A24 family [Vibrio parahaemolyticus AN-5034]
 gi|260898198|ref|ZP_05906694.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
           parahaemolyticus Peru-466]
 gi|260900394|ref|ZP_05908789.1| peptidase, A24 family [Vibrio parahaemolyticus AQ4037]
 gi|28807420|dbj|BAC60685.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308089056|gb|EFO38751.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
           parahaemolyticus Peru-466]
 gi|308091369|gb|EFO41064.1| peptidase, A24 family [Vibrio parahaemolyticus AN-5034]
 gi|308109134|gb|EFO46674.1| peptidase, A24 family [Vibrio parahaemolyticus AQ4037]
 gi|308114018|gb|EFO51558.1| peptidase, A24 family [Vibrio parahaemolyticus K5030]
          Length = 162

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 11/118 (9%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L+   +SD     IPN+  +++L    +TA +L      +  H   GL+ F +CF  +  
Sbjct: 11  LIAIGVSDAQKHRIPNKAVLLLL--VAVTANVLYSPSVSLLDHAYGGLVAFAVCFALYLV 68

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI----LGGILSVFILTVRMITNHIPI 132
             M GGDVKLL     W G     LS L+  +I     GGI+ +F L + + +  + +
Sbjct: 69  KAMAGGDVKLLAVIGAWLG-----LSNLWEASIGIILAGGIVGIFYLMLHIASTSVAL 121


>gi|153836819|ref|ZP_01989486.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
           parahaemolyticus AQ3810]
 gi|149749965|gb|EDM60710.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
           parahaemolyticus AQ3810]
          Length = 162

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 11/118 (9%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L+   +SD     IPN+  +++L    +TA +L      +  H   GL+ F +CF  +  
Sbjct: 11  LIAIGVSDAQKHRIPNKAVLLLL--VAVTANVLYSPSVSLLDHAYGGLVAFAVCFALYLV 68

Query: 79  NIMGGGDVKLLTSTAVWFG----WTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
             M GGDVKLL     W G    W  S       + + GGI+ +F L + + +  + +
Sbjct: 69  KAMAGGDVKLLAVIGAWLGMSNLWEAS-----IGIILAGGIVGIFYLMLHIASTSVAL 121


>gi|323491529|ref|ZP_08096708.1| hypothetical protein VIBR0546_18006 [Vibrio brasiliensis LMG 20546]
 gi|323314105|gb|EGA67190.1| hypothetical protein VIBR0546_18006 [Vibrio brasiliensis LMG 20546]
          Length = 172

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 3/107 (2%)

Query: 23  ALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81
           A+SD     IPN + + V+L SF+  AF++  DY  +    + G+  FI   C +   +M
Sbjct: 13  AVSDAKEHRIPNYLLLLVILISFINKAFVI-QDYNFLLWSFVSGITCFIAALCLYFLKVM 71

Query: 82  GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
             GDVKLL     W G +   L  ++++AI   ++  F   +R+  +
Sbjct: 72  APGDVKLLGVIGFWLG-SEHILGAVYWIAISSVVIGGFYALLRLAES 117


>gi|148557763|ref|YP_001265345.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1]
 gi|148502953|gb|ABQ71207.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1]
          Length = 157

 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 17/103 (16%)

Query: 58  IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTP--SFLSFLFFVAILGGI 115
           +AL + V L +F +    F   +MGGGDVK++ + A+W    P  + +  L  +A+ GG 
Sbjct: 57  VALRIGVALAIFALFAVLFMLRMMGGGDVKMIGALALWL---PFHALIVMLTVMALAGGA 113

Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
           +++ +L          I   + P +   + ++PYG+AI++GGL
Sbjct: 114 ITLGLL----------IRQRWRPNAD--RPEVPYGVAIAIGGL 144


>gi|159043670|ref|YP_001532464.1| peptidase A24A prepilin type IV [Dinoroseobacter shibae DFL 12]
 gi|157911430|gb|ABV92863.1| peptidase A24A prepilin type IV [Dinoroseobacter shibae DFL 12]
          Length = 169

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 17/162 (10%)

Query: 7   VFSAVFLIP---PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--GMDYELIALH 61
           V  A++ +P   P CL F A SD+    IPNR  +++LG F +   L    +DY    +H
Sbjct: 5   VSQALWFLPFILPICL-FVAWSDMKFMRIPNRSVLLLLGMFAIVGLLALPLLDYAWRWVH 63

Query: 62  LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
           ++    V  + F   +  ++G GD K   + A +     + L  + F AIL G  +   L
Sbjct: 64  VIA---VLAVGFVMSSAGLVGAGDAKFAAAMAPFVALQDALLVVVLFSAILLGAFATHRL 120

Query: 122 TVRMITNHIPIFGMFVP--KSFLMKNKIPYGIAISMGGLISY 161
             RM    +P      P  +S+  K   P G+A+S G LI Y
Sbjct: 121 A-RM----LPAVRRLTPDWESWTRKRDFPMGLALS-GTLIFY 156


>gi|147677479|ref|YP_001211694.1| type II secretory pathway, prepilin signal peptidase PulO and
           related peptidases [Pelotomaculum thermopropionicum SI]
 gi|146273576|dbj|BAF59325.1| type II secretory pathway, prepilin signal peptidase PulO and
           related peptidases [Pelotomaculum thermopropionicum SI]
          Length = 250

 Score = 43.9 bits (102), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 16/147 (10%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L+ AA  D    +IP++++++ + + L  A+L+  D     L   +     ++     + 
Sbjct: 109 LITAAFIDFKHQIIPDKLAVLGIIAGLPLAWLVSADRLKSGLLGFLAAGAIMLAIALASR 168

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
             MGGGDVKL     ++ GW P+ L  LF   + GG + +F+L     +           
Sbjct: 169 GGMGGGDVKLSAVMGLFLGW-PAVLVALFLAFLAGGAVGLFLLATGRKSR---------- 217

Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSY 165
                K+ +P+G  +++GG++S  + Y
Sbjct: 218 -----KDAVPFGPYLALGGVVSAFEGY 239


>gi|329890998|ref|ZP_08269341.1| peptidase A24A prepilin type IV [Brevundimonas diminuta ATCC 11568]
 gi|328846299|gb|EGF95863.1| peptidase A24A prepilin type IV [Brevundimonas diminuta ATCC 11568]
          Length = 73

 Score = 43.9 bits (102), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 105 FLFFVAILGGILSVFILTVRMITNHIPIFGMFVP----KSFLMKNKIPYGIAISMGGLIS 160
           F+ + A+ GG   + ++T R   +H+P F    P    +    K  IPYG+AI++G L++
Sbjct: 4   FILYTALAGGGFCLLLMTAR---SHLPFFAQTGPGWVMRLMQPKGDIPYGVAIAIGALLA 60

Query: 161 YPDSYLFKVALMG 173
           YP S L    + G
Sbjct: 61  YPSSPLMTAYITG 73


>gi|218509312|ref|ZP_03507190.1| prepilin peptidase protein [Rhizobium etli Brasil 5]
          Length = 51

 Score = 43.5 bits (101), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
           +N I   G+ +P S L+  KIPYGIAI++GG +++P S +F  AL  L 
Sbjct: 3   SNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESLK 51


>gi|126735711|ref|ZP_01751456.1| hypothetical protein RCCS2_17586 [Roseobacter sp. CCS2]
 gi|126714898|gb|EBA11764.1| hypothetical protein RCCS2_17586 [Roseobacter sp. CCS2]
          Length = 152

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 13/146 (8%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV--FIICFCF 75
            LV A + ++ +  IPN +++V    F L A LL M  +   L+  +GL V  FI     
Sbjct: 13  VLVVAMVLEIKTGRIPNWLTLV---PFALFAVLLVMVEDRTPLYWQMGLAVGTFIFGLVL 69

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           FA    G G VKLL  TA++  +  +F +FL F+AI  G  S+ I+ +R       +FG 
Sbjct: 70  FAIGGSGAGAVKLLAGTALFVPFENAFFTFLLFLAIFFGS-SIIIVALR------KVFGS 122

Query: 136 FVPKSFLMKNKI-PYGIAISMGGLIS 160
                 +M N + P   +I M GL+ 
Sbjct: 123 EDSSWHVMANAVLPLSFSIGMAGLLG 148


>gi|326405524|ref|YP_004285606.1| putative peptidase A24A [Acidiphilium multivorum AIU301]
 gi|325052386|dbj|BAJ82724.1| putative peptidase A24A [Acidiphilium multivorum AIU301]
          Length = 167

 Score = 43.1 bits (100), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 7/109 (6%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFA 77
           L FA   DL    IP+ V   M    L   FL   D ++ + + L V  ++F + F  + 
Sbjct: 13  LAFACWQDLLLRRIPDGVPAAM---ALAGIFLRLRDGFQPLGVSLAVAAVLFAVLFAVYL 69

Query: 78  FNIMGGGDVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTVRM 125
              +GGGDVKL+ + A   G+ P +   FLF   + GGIL++  L +R+
Sbjct: 70  RRSIGGGDVKLIVALA--LGYGPLALAGFLFATVLAGGILALAYLALRV 116


>gi|171317757|ref|ZP_02906939.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5]
 gi|171097107|gb|EDT41960.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5]
          Length = 159

 Score = 43.1 bits (100), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           V L   F LV  A  DL    + NR  +     +L+ A L+       A H+     + +
Sbjct: 5   VQLAATFVLVSIAAQDLRERRVSNRAVLAFAMLYLVAAALVREGLAPFAGHVATAAAMLV 64

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           +         +GGGDVKL  +  +W G T + L  L  V   G    + +L        I
Sbjct: 65  VFGGLRHAGWLGGGDVKLAAAVFLWAGPTLA-LPVLTIVGASGAACGLAMLAAVARQRRI 123

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                  P   +    +PYG+A+++GG+++
Sbjct: 124 ------APAHTMATRGVPYGVALALGGVLA 147


>gi|269962014|ref|ZP_06176369.1| hypothetical protein VME_27530 [Vibrio harveyi 1DA3]
 gi|269833337|gb|EEZ87441.1| hypothetical protein VME_27530 [Vibrio harveyi 1DA3]
          Length = 161

 Score = 43.1 bits (100), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           HL  GL+ F +CF  +   +M GGDVKLL     W G + +  +    + + GG++S+F 
Sbjct: 50  HLYGGLVAFAVCFVLYLCKVMAGGDVKLLAVLGAWIGLS-NLGAASTGIVLAGGVVSLFY 108

Query: 121 LTVRMITNHI 130
           L + + ++ I
Sbjct: 109 LALHIGSSTI 118


>gi|54309658|ref|YP_130678.1| hypothetical protein PBPRA2494 [Photobacterium profundum SS9]
 gi|46914096|emb|CAG20876.1| Hypothetical membrane protein [Photobacterium profundum SS9]
          Length = 145

 Score = 43.1 bits (100), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 12/130 (9%)

Query: 28  FSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVK 87
           +S +   R+S ++  +    +  L      +A  ++  +I+F+I    F FNI+  GD K
Sbjct: 17  YSDIRYRRISNIVCAAVFSLSLTLAFSQHQLADGIISSIIMFLISLLLFYFNIVAAGDGK 76

Query: 88  LLTSTAVWFGWTPSFLSFLFFVAILGGILSV-FILTVRMITNHIPIFGMFVPKSFLMKNK 146
           L ++ AV        +S L+F  + GG+++V +++  ++I    P       K+      
Sbjct: 77  LASAFAVALS-PQQLISALYFTLLFGGVVAVIYLIKYQLIQRRSP------EKA----RG 125

Query: 147 IPYGIAISMG 156
           +PYG+AI+ G
Sbjct: 126 LPYGVAIACG 135


>gi|297581606|ref|ZP_06943528.1| predicted protein [Vibrio cholerae RC385]
 gi|297534013|gb|EFH72852.1| predicted protein [Vibrio cholerae RC385]
          Length = 138

 Score = 43.1 bits (100), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 9/100 (9%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           LV+ ALSDL    +PN        + +L A ++G    L   ++L+ ++V  +    F F
Sbjct: 9   LVWVALSDLQQRKVPNI-------AVILFAVVVGAVTPLSQGNVLISVVVLSLGMLAFHF 61

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
            + G GD KLL   A  +G    + S +F  A+ GG+LSV
Sbjct: 62  RLFGAGDSKLLAVCA--YGAGDQWTSLIFITALFGGVLSV 99


>gi|158421905|ref|YP_001523197.1| prepilin peptidase [Azorhizobium caulinodans ORS 571]
 gi|158328794|dbj|BAF86279.1| prepilin peptidase [Azorhizobium caulinodans ORS 571]
          Length = 155

 Score = 42.7 bits (99), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 16/152 (10%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY-ELIALHLLVGLIVFIICFC 74
           P  LV A  SDL    IPN   IV+L   L  A L  + Y + + L L++   V  + F 
Sbjct: 16  PVALVAALASDLSRRTIPN---IVVLALLLGFAALAFLGYVDDLPLRLVLAGAVLCVGFA 72

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
            F+ +++G GD KL  +TA+W   T     F  +V +L G +   ++    +       G
Sbjct: 73  LFSEDVIGAGDAKLAAATALWLDPT----QFPLYV-LLCGAMGALLVAAATVARQQGWGG 127

Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
                   +   +PYG+A++  GL  +P S L
Sbjct: 128 R-------LARGLPYGVALATAGLALFPYSSL 152


>gi|332188358|ref|ZP_08390083.1| type IV leader peptidase family protein [Sphingomonas sp. S17]
 gi|332011587|gb|EGI53667.1| type IV leader peptidase family protein [Sphingomonas sp. S17]
          Length = 161

 Score = 42.7 bits (99), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 11/100 (11%)

Query: 60  LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
           L + V + +F++    F   +MGGGDVK++ + A+W    P  +  L  ++I GG     
Sbjct: 60  LQIGVAIGLFLLFALAFRVGMMGGGDVKMIAALALWLPLGP-LMRMLLLMSIAGG----- 113

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
           I+T+ M+ +H                ++PYG+AI+M GL+
Sbjct: 114 IVTLAMLIDH-----RLRRSGSDGAIEVPYGVAIAMAGLL 148


>gi|32477846|ref|NP_870840.1| signal peptide [Rhodopirellula baltica SH 1]
 gi|32448403|emb|CAD77918.1| hypothetical protein-signal peptide and transmembrane prediction
           [Rhodopirellula baltica SH 1]
          Length = 141

 Score = 42.4 bits (98), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 2/99 (2%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           LV+A+L DL +  IP+ +S V++G   + + LLG     I   L  G++  +I    F F
Sbjct: 13  LVWASLHDLRTREIPDWIS-VLIGVVAIVSSLLGWLGLSIVWVLAGGVVGLVIASALFRF 71

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
             +GGGD KL+ + A+  G     L  LF +AI GG+LS
Sbjct: 72  AKLGGGDGKLIIALAMLVG-PVGILIVLFGMAITGGVLS 109


>gi|323700357|ref|ZP_08112269.1| peptidase A24A prepilin type IV [Desulfovibrio sp. ND132]
 gi|323460289|gb|EGB16154.1| peptidase A24A prepilin type IV [Desulfovibrio desulfuricans ND132]
          Length = 182

 Score = 42.4 bits (98), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 16/97 (16%)

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT------VRMITNHIPI 132
            +MG GDVKL+     W G   +F +FL F  I GG+ ++ +L        R++ N    
Sbjct: 72  GVMGAGDVKLMAGVGAWLGVEATFTAFL-FTCIAGGVYALAVLAFHREILKRVLRNITAT 130

Query: 133 FGMFVPKS------FLMKNKIP---YGIAISMGGLIS 160
           F +F+            +N +P   YG+AI++G +++
Sbjct: 131 FSVFMASRKFDFAPVTAENAMPRLCYGVAIAVGTVVA 167


>gi|148262015|ref|YP_001236142.1| peptidase A24A, prepilin type IV [Acidiphilium cryptum JF-5]
 gi|146403696|gb|ABQ32223.1| peptidase A24A, prepilin type IV [Acidiphilium cryptum JF-5]
          Length = 167

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFA 77
           L FA   DL    IP+ V   M    L   FL   D ++   + L V  ++F + F  + 
Sbjct: 13  LAFACWQDLLLRRIPDGVPAAMA---LAGIFLRLRDGFQPFGVSLAVAAVLFAVLFAVYL 69

Query: 78  FNIMGGGDVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTVRM 125
              +GGGDVKL+ + A   G+ P +   FLF   + GGIL++  L +R+
Sbjct: 70  RRSIGGGDVKLIVALA--LGYGPLALAGFLFATVLAGGILALAYLALRV 116


>gi|209546486|ref|YP_002278404.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537730|gb|ACI57664.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 178

 Score = 42.0 bits (97), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 14/142 (9%)

Query: 21  FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV----------GLIVFI 70
           +AA +D  +  IPN V + ++  ++L A  + +  E +   L            GL++F+
Sbjct: 18  YAAWTDFRTWKIPNTVVLALVTLYVLRAVAVILSSEDVGAALFASSGIGGDVGAGLLMFM 77

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI-LSVFILTVRMITNH 129
           +    +A  + G GD KL     ++ GW  S L F FF+ +LG + L    L V +   H
Sbjct: 78  LGVVLWALRLFGAGDAKLFLPIGLFVGWH-SMLPFSFFLLVLGIVTLLALRLPVPLPVAH 136

Query: 130 IPIFGMFVPKSFLMKNKIPYGI 151
           +  F            K+PYG+
Sbjct: 137 LAFFMRI--AEIRASRKVPYGV 156


>gi|254255252|ref|ZP_04948568.1| Type II secretory pathway prepilin signal peptidase PulO
           [Burkholderia dolosa AUO158]
 gi|124900989|gb|EAY71739.1| Type II secretory pathway prepilin signal peptidase PulO
           [Burkholderia dolosa AUO158]
          Length = 200

 Score = 42.0 bits (97), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 26/165 (15%)

Query: 16  PFCL----VFAALSDLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-F 69
           P C+    + AA +D+ S  IPNRV ++ ++G+ +    L G+     AL  L G     
Sbjct: 32  PLCVTLLAIVAASTDIASRRIPNRVVAVGLVGALIAQCALHGIAAG--ALQWLAGAATGL 89

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVFILTVRMITN 128
            +   F+    M  GDVKL+ +   W G   +F ++   FV  LGGI ++ +  +R    
Sbjct: 90  ALLLPFYLLRGMAAGDVKLMLAIGAWVGAEMTFYIALATFV--LGGIGAIVLALLRGRVR 147

Query: 129 H--IPIFGMFVPKSFLMKNK-------------IPYGIAISMGGL 158
              + +  M   +SF +  +             +PYG+AI+ G L
Sbjct: 148 DLCVNVCRMVARRSFALHGESADGSAPVASAGALPYGVAIAAGTL 192


>gi|116255767|ref|YP_771600.1| putative transmembrane pilus assembly protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115260415|emb|CAK03519.1| putative transmembrane pilus assembly protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 187

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 20/155 (12%)

Query: 18  CLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALH-LLVGLIVFIICFCF 75
           C + AA+ D     IPN V+   +LG F+L A   G+    +A   LL   ++FII F  
Sbjct: 20  CTMTAAVLDHRHGHIPNAVTYPCLLGGFMLAAVSGGLAGIGLAFAGLLAAGLIFIIAF-- 77

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR----MITNHIP 131
            A    GGGDVKL+ +     G  P+ +       + GG+++VF +  R    ++   + 
Sbjct: 78  -AAGSCGGGDVKLMAALGAILGLWPA-IDVTLASLMAGGVIAVFSMARRVQWSVLARTVG 135

Query: 132 IFGMFVPKSFL----------MKNKIPYGIAISMG 156
           +F + +P  F             + + +G+A ++G
Sbjct: 136 LFALLLPAGFRDAASVLKPRETHHTVRFGVAAALG 170


>gi|167767555|ref|ZP_02439608.1| hypothetical protein CLOSS21_02074 [Clostridium sp. SS2/1]
 gi|167710847|gb|EDS21426.1| hypothetical protein CLOSS21_02074 [Clostridium sp. SS2/1]
 gi|291558487|emb|CBL37287.1| Flp pilus assembly protein, protease CpaA [butyrate-producing
           bacterium SSC/2]
          Length = 167

 Score = 41.6 bits (96), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 10/130 (7%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG-LIVFIICFCFFA 77
           L+ AA+ D     IPN+++    G+  L   +L     + A  +++G L+V I C   F 
Sbjct: 9   LIMAAIYDYRDFKIPNKLN----GAGALITLVLAGVSGMKAADMMIGVLVVLISCGLLFY 64

Query: 78  FNIMGGGDVKLLTSTAVWFGWT-PSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
              +GGGDVKLL   A+  G   P FL   F   I  GI +V  L  R    H+ +F +F
Sbjct: 65  IGCLGGGDVKLLMVCAISIGRAMPRFLILSF---ICNGIYAVIFLWKRK-NFHLRLFRLF 120

Query: 137 VPKSFLMKNK 146
              +    NK
Sbjct: 121 QYVTQCKDNK 130


>gi|317498627|ref|ZP_07956920.1| type IV leader peptidase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894114|gb|EFV16303.1| type IV leader peptidase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 167

 Score = 41.6 bits (96), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 10/130 (7%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG-LIVFIICFCFFA 77
           L+ AA+ D     IPN+++    G+  L   +L     + A  +++G L+V I C   F 
Sbjct: 9   LIMAAIYDYRDFKIPNKLN----GAGALITLVLAGVSGMKAADMMIGVLVVLISCGLLFY 64

Query: 78  FNIMGGGDVKLLTSTAVWFGWT-PSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
              +GGGDVKLL   A+  G   P FL   F   I  GI +V  L  R    H+ +F +F
Sbjct: 65  IGCLGGGDVKLLMVCAISIGRAMPRFLILSF---ICNGIYAVIFLWKRK-NFHLRLFRLF 120

Query: 137 VPKSFLMKNK 146
              +    NK
Sbjct: 121 QYVTQCKDNK 130


>gi|288956967|ref|YP_003447308.1| hypothetical protein AZL_001260 [Azospirillum sp. B510]
 gi|288909275|dbj|BAI70764.1| hypothetical protein AZL_001260 [Azospirillum sp. B510]
          Length = 155

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
            +A +SD+    IPN +S+ +   F +        ++ +      GL   I+   F A  
Sbjct: 14  AWAMVSDIRRRTIPNWISLALAVLFAVATAADPGRFDPVLAATAAGLTFAILLAAFLA-G 72

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFF-VAILGGILSVFILTVRMITNHIPIFGMFVP 138
           ++GGGDVKL+T+ A+W G   S L  LF   A++GG+++   L +R +        +   
Sbjct: 73  LVGGGDVKLMTAAALWTGL--SGLPGLFLGTALIGGLMAFGALALRGLRRLG----LLSR 126

Query: 139 KSFLMKNKIPYGIAISMGGLISYP 162
           +     + +PYG+AI    L+S P
Sbjct: 127 EGAGEMDGLPYGVAIGAAALLSIP 150


>gi|322434102|ref|YP_004216314.1| peptidase A24A prepilin type IV [Acidobacterium sp. MP5ACTX9]
 gi|321161829|gb|ADW67534.1| peptidase A24A prepilin type IV [Acidobacterium sp. MP5ACTX9]
          Length = 182

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 15/158 (9%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
           C    +L DL S  IPNR++   +   LL    L   +  + L  L GLI   I   FF 
Sbjct: 16  CASIGSLHDLRSRRIPNRLTGPAILCGLLLHLAL-GGWTQLGLSALAGLIAGGIFLVFFV 74

Query: 78  FNIMGGGDVKLLTSTAVWFGWT---PSFLSFLFFVAILG-------GILSVFILTVRMIT 127
              MG GDVKL+T+     G        ++ +   A++G       G L   +L V  + 
Sbjct: 75  AGGMGAGDVKLMTAVGCLAGTAYIKEVLIATVLIGALMGVALALYRGRLRETMLNVITLV 134

Query: 128 NHIPIFGMFVPKSFLMKN----KIPYGIAISMGGLISY 161
            H    G+       ++N    ++PY + I+ G L+++
Sbjct: 135 QHHGAEGLAAHPELNVRNVATLRLPYALPIAAGCLLTF 172


>gi|238793620|ref|ZP_04637243.1| Flp pilus assembly protein, protease CpaA [Yersinia intermedia ATCC
           29909]
 gi|238727035|gb|EEQ18566.1| Flp pilus assembly protein, protease CpaA [Yersinia intermedia ATCC
           29909]
          Length = 154

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 15/84 (17%)

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
           +  F F ++GGGDVKL+T+  +      S L F+ + AI+GG+              + I
Sbjct: 79  YIIFHFKLIGGGDVKLITALLLALTAEQS-LDFIIYTAIMGGV--------------VMI 123

Query: 133 FGMFVPKSFLMKNKIPYGIAISMG 156
            G+ + K  + +  +PY +AI+MG
Sbjct: 124 IGLLINKHDIQQRGVPYAVAITMG 147


>gi|86360578|ref|YP_472466.1| putative cpaA pilus assembly protein [Rhizobium etli CFN 42]
 gi|86284680|gb|ABC93739.1| putative cpaA pilus assembly protein [Rhizobium etli CFN 42]
          Length = 181

 Score = 41.2 bits (95), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 14/143 (9%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV----------GLIVF 69
           ++AA +D  S  IPN V + ++  + L A    +  E +   L            GL++F
Sbjct: 20  LYAAWTDFRSWKIPNAVVLALMTVYALRAVAAMLGSEDLGAALFASSGIGGDVGAGLLMF 79

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI-LSVFILTVRMITN 128
           ++    +AF + G GD KL     ++ GW    L F F + +LG + L    L V +   
Sbjct: 80  MLGVALWAFRLFGAGDAKLFLPIGLFVGWH-GMLPFSFLLLVLGVMTLLALRLPVPLSVA 138

Query: 129 HIPIFGMFVPKSFLMKNKIPYGI 151
           H+  F     +      KIPYG+
Sbjct: 139 HLAFFMRI--EEIRASRKIPYGV 159


>gi|148642206|ref|YP_001272719.1| type IV leader peptidase [Methanobrevibacter smithii ATCC 35061]
 gi|148551223|gb|ABQ86351.1| type IV leader peptidase [Methanobrevibacter smithii ATCC 35061]
          Length = 289

 Score = 41.2 bits (95), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 11/109 (10%)

Query: 6   MVFSAVFLIPP-----FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYEL 57
           M FS +FL+       FC + AA+ D+ + +I NR+++ +L   L++   L +   + + 
Sbjct: 1   MDFSIIFLVQIIVTSLFCCL-AAIFDVKTGIISNRLNLSLLIFGLISNLFLSVLSANIKY 59

Query: 58  IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLT--STAVWFGWTPSFLS 104
           I   ++   + +I+ F F+   I GGGDVKLLT  +T + FG    FL+
Sbjct: 60  ILCSIISMFVTYIVTFLFWKLKIWGGGDVKLLTAIATVIPFGINLDFLN 108


>gi|51246869|ref|YP_066753.1| type IV prepilin leader peptidase [Desulfotalea psychrophila LSv54]
 gi|50877906|emb|CAG37746.1| related to type IV prepilin leader peptidase [Desulfotalea
           psychrophila LSv54]
          Length = 263

 Score = 41.2 bits (95), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 31/160 (19%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-----FIICFCFFAFNI 80
           D +  +IP+ +S+  +    L +F+   + E+  L  L+GL+V     + I + +F    
Sbjct: 120 DFYHQIIPDLISLPGIALGFLFSFI---NPEISWLSSLIGLLVGGGALYAIAWGYFTLRK 176

Query: 81  ---MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
              MGGGD+KLL     W GW  S +  +F  ++ G I+ +  L ++   N         
Sbjct: 177 QEGMGGGDIKLLAMLGAWLGWQ-SLVFIVFTSSLFGAIIGLIALRIQNKGN--------- 226

Query: 138 PKSFLMKNKIPYGIAISMGGLI----SYPDSYLFKVALMG 173
                 + KIP+G  + +  L+    S    Y F++ L G
Sbjct: 227 ------QTKIPFGPFLCLAALVYLFYSVEIQYFFQLYLNG 260


>gi|115358169|ref|YP_775307.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
 gi|115283457|gb|ABI88973.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
          Length = 159

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           V L     LV  A+ DL    + NR  +     +L+ A L+       A H+     + +
Sbjct: 5   VQLTATLVLVSIAMQDLRERRVSNRAVLAFAMLYLIAAALVREGLAPFAGHVATAAAMLV 64

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           +         +GGGDVKL  +  +W G  P  L  L  V   G    + +L        +
Sbjct: 65  VFGALRHAGWLGGGDVKLAAAVFLWAG-PPLALPVLTIVGASGAACGLAMLAGLARQRRV 123

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                  P   +    +PYG+A++ GG ++
Sbjct: 124 ------APAHPMATRGVPYGVALAFGGALA 147


>gi|291533367|emb|CBL06480.1| Type IV leader peptidase family [Megamonas hypermegale ART12/1]
          Length = 135

 Score = 40.8 bits (94), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 4/98 (4%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFIICFCFFAFNIM 81
           A  D  +  I N+ S++ LG  L+   ++  +D E I   LL+ LI+F + + F+   +M
Sbjct: 19  AWVDFKTLKIKNK-SLLYLGLILVVRLMIFNIDLEKIIYALLINLIIFCVIY-FYPKQLM 76

Query: 82  GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
           G GD+KL    A+W  + P  +  ++   I GGI++++
Sbjct: 77  GAGDLKLALVLALWCNY-PQCIVAIYVSFIFGGIVAIY 113


>gi|241667108|ref|YP_002985192.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862565|gb|ACS60230.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 187

 Score = 40.4 bits (93), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 20/155 (12%)

Query: 18  CLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALH-LLVGLIVFIICFCF 75
           C + AA+ D     IPN V+   +LG F+L A   G+    +A   L    ++FII F  
Sbjct: 20  CTMTAAVLDHRHGHIPNAVTYPCLLGGFMLAAVSGGLAGIGLAFAGLFAAGLIFIIAF-- 77

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR----MITNHIP 131
            A    GGGDVKL+ +     G  P+ +       ++GG+++VF +  R    ++   + 
Sbjct: 78  -AAGSCGGGDVKLMAALGAILGLWPA-IDVTLASLMVGGVIAVFSMARRVQWSVLARTVG 135

Query: 132 IFGMFVPKSFL----------MKNKIPYGIAISMG 156
           +F + +P  F             + + +G+A ++G
Sbjct: 136 LFALLLPAGFRDAASVLKPRETHHTVRFGVAAALG 170


>gi|296121062|ref|YP_003628840.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776]
 gi|296013402|gb|ADG66641.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776]
          Length = 183

 Score = 40.4 bits (93), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC-FFA 77
           L+ AA  D     +PN ++  M+ S L+  F++G    L     L+G++V + C    +A
Sbjct: 20  LILAAWIDGKELRVPNWITFPMVLSGLIYGFVMGGWAGL--GDSLIGMVVGLACLLPLYA 77

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
              MG GDVKL+     W G   ++ +F+  V ++G I+++ +   R
Sbjct: 78  VGGMGAGDVKLMAGMGAWLGAAITWQAFMVSV-VVGAIMAIIMACYR 123


>gi|86138001|ref|ZP_01056577.1| membrane protein, putative [Roseobacter sp. MED193]
 gi|85825593|gb|EAQ45792.1| membrane protein, putative [Roseobacter sp. MED193]
          Length = 168

 Score = 40.4 bits (93), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 13/84 (15%)

Query: 16 PFCLVFAALSDLFSAMIPNRVS------IVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
          P C   AA +DL S  IPN ++       V+LG F++ ++    DY    LHL +G+   
Sbjct: 20 PLCFA-AAYTDLSSMRIPNWITDSLGAVYVILGLFIMPSW---ADYGWQLLHLPIGVA-- 73

Query: 70 IICFCFFAFNIMGGGDVKLLTSTA 93
           I F F++  +MG GD K + + A
Sbjct: 74 -IGFLFYSAGVMGAGDAKFIGAAA 96


>gi|197103823|ref|YP_002129200.1| prepilin peptidase CpaA [Phenylobacterium zucineum HLK1]
 gi|196477243|gb|ACG76771.1| prepilin peptidase CpaA [Phenylobacterium zucineum HLK1]
          Length = 172

 Score = 40.4 bits (93), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
           A+ D+ S  IPN + + + G+F+  A   G+    +A H  +G+   ++    FA   +G
Sbjct: 21  AVKDVASFTIPNWIPLALAGAFVPAALAAGLPPAALAAHAGLGVGALVLGMVLFAVRAIG 80

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
           GGD KL+ +  +W GW P+  +FL    I
Sbjct: 81  GGDGKLMAAAVLWLGW-PALPTFLLVTVI 108


>gi|152994345|ref|YP_001339180.1| peptidase A24A prepilin type IV [Marinomonas sp. MWYL1]
 gi|150835269|gb|ABR69245.1| peptidase A24A prepilin type IV [Marinomonas sp. MWYL1]
          Length = 186

 Score = 40.4 bits (93), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 14/102 (13%)

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI------- 120
           V I+ F  F    MG GDVKL++   +W G+    L FL   A++GG+L++ +       
Sbjct: 75  VLIVGFGLFLIGQMGAGDVKLMSVLCLWVGYDNQ-LVFLVVTALVGGMLALLMPVLSLLE 133

Query: 121 ----LTVRMITNHIPIFGMFVPKSFLMK--NKIPYGIAISMG 156
                 +  I++  P   +  P  F  +    +PYG+AIS G
Sbjct: 134 IAGAKVIVQISSRFPRLKIPAPLVFSREGVKGLPYGLAISGG 175


>gi|170703399|ref|ZP_02894176.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10]
 gi|170131688|gb|EDT00239.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10]
          Length = 159

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           V L     LV  A+ DL    + NR  +     +L+ A L+       A H+     + +
Sbjct: 5   VQLTATLVLVSIAMQDLRERRVSNRAVLAFAMLYLVAAALVREGLASFAGHVATAAAMLV 64

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           +         +GGGDVKL  +  +W G  P  L  L  V   G    + ++        +
Sbjct: 65  VFGGMRHAGWLGGGDVKLAAAVFLWAG-PPLALPVLTIVGASGAACGLAMIAAVARQRRV 123

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                  P   +    +PYG+A++ GG ++
Sbjct: 124 ------APAHPMATRGVPYGVALAFGGALA 147


>gi|320101690|ref|YP_004177281.1| peptidase A24A prepilin type IV [Isosphaera pallida ATCC 43644]
 gi|319748972|gb|ADV60732.1| peptidase A24A prepilin type IV [Isosphaera pallida ATCC 43644]
          Length = 269

 Score = 40.0 bits (92), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 11/115 (9%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLL----TAFLLGMDYELIALHLLVGLIVFIICFC 74
           ++ AA+ D +   +PN ++   LG+ +L    T+   G  + +  L  L G +++ +C  
Sbjct: 26  MIEAAIIDGWKLKVPNWLTYNFLGAGILYWTVTSGWAGFQFAM--LGFLAGFVLYPLCL- 82

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
                 MG GDVKLL     W GW  + + F    A++GGI++V ++       H
Sbjct: 83  ---VGGMGAGDVKLLFGIGAWTGWYATLVIFA-LCAVVGGIMAVIMMAREGQLAH 133


>gi|85859141|ref|YP_461343.1| flp pilus assembly protein, protease [Syntrophus aciditrophicus SB]
 gi|85722232|gb|ABC77175.1| flp pilus assembly protein, protease [Syntrophus aciditrophicus SB]
          Length = 180

 Score = 40.0 bits (92), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 26/161 (16%)

Query: 19  LVFAALSDLFSAMIPNRV--SIVMLGS--FLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
           L+ A+++DL +  I NR+  S ++ G   + LTA   G    L  L L  GL + I+   
Sbjct: 20  LITASVTDLRAHRISNRLTYSTMLFGLIFYSLTAGFFGFLQSLSGLFL--GLALLIV--- 74

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-MITNHIPIF 133
           F+    MG GDVKL+ +     G    F +FL   A++GGI ++ IL  +  + + +  F
Sbjct: 75  FYLVGGMGAGDVKLMAAVGSLLGPQGVFAAFL-GTALIGGIYALIILAAKGYLMDTMKRF 133

Query: 134 GMFVPKSFLMKNK---IP-----------YGIAISMGGLIS 160
            + + K+F M  K   IP           YG+AIS+G L S
Sbjct: 134 -VLMLKTFFMTKKFIYIPPPRPEKAPLLCYGVAISLGTLAS 173


>gi|223984525|ref|ZP_03634657.1| hypothetical protein HOLDEFILI_01952 [Holdemania filiformis DSM
           12042]
 gi|223963511|gb|EEF67891.1| hypothetical protein HOLDEFILI_01952 [Holdemania filiformis DSM
           12042]
          Length = 247

 Score = 40.0 bits (92), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 19/138 (13%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L+  A+ DL +  IP+R+S+ +L   +L    L ++   I   +L  LI+ +  +     
Sbjct: 110 LIVIAMIDLDTMEIPDRLSVFIL---ILAVIALALEPSSIPSRILGALIISVPFWILSRL 166

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           N MGGGDVK++ +   + G  P  L+     + +G I +++++  +              
Sbjct: 167 NAMGGGDVKIMCAAGFYLG-APLVLTAFVLSSFIGAIAALYLMICKKKDR---------- 215

Query: 139 KSFLMKNKIPYGIAISMG 156
                K++IP+G  +++G
Sbjct: 216 -----KSEIPFGPFLAIG 228


>gi|296133253|ref|YP_003640500.1| peptidase A24A domain protein [Thermincola sp. JR]
 gi|296031831|gb|ADG82599.1| peptidase A24A domain protein [Thermincola potens JR]
          Length = 250

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 16/80 (20%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
           MGGGD+KL     +W GW  +FL   FF+A L G  +V I             G+     
Sbjct: 171 MGGGDIKLAAMLGLWLGWQQAFLG--FFLAFLSGT-AVGI-------------GLMATGQ 214

Query: 141 FLMKNKIPYGIAISMGGLIS 160
              K+ IP+G  IS+G L+S
Sbjct: 215 KSRKDAIPFGPFISLGALLS 234


>gi|258405294|ref|YP_003198036.1| peptidase A24A prepilin type IV [Desulfohalobium retbaense DSM
           5692]
 gi|257797521|gb|ACV68458.1| peptidase A24A prepilin type IV [Desulfohalobium retbaense DSM
           5692]
          Length = 189

 Score = 39.7 bits (91), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 32/164 (19%)

Query: 18  CLVFAALSDLFSAMIPNRVS--IVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFIICF 73
            L+FAAL DL    IPN ++  + +      TAF  L G+ + +  +  L+G  +F+  +
Sbjct: 17  ALIFAALYDLRYQKIPNLLNFPLALFALIYHTAFTGLNGLAFGVTGM--LLGTALFLPPY 74

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR--------- 124
            F     MG GD KL+ +     G    F+S L F AI GG+ +V +L V          
Sbjct: 75  IFGG---MGAGDTKLMGAIGAVLGAKGVFVSAL-FTAIFGGLYAVLLLLVHRGYARTLMQ 130

Query: 125 ----------MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
                     ++  +IP      P+S     ++ YGIAI++G L
Sbjct: 131 RTWEGLKTLVLVRRYIPDSS---PQSTNTSPRLCYGIAIALGTL 171


>gi|116621340|ref|YP_823496.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224502|gb|ABJ83211.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 184

 Score = 39.7 bits (91), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 22  AALSDLFSAMIPNRVSI--VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
           AA+ D+    IPN +++  V+ G  + T    G+   + AL  L   + F +    +A +
Sbjct: 21  AAIYDIRYRRIPNWLNMFGVLAGIAMNTFLYQGLPGLVFALKGL--FLAFAVYVVLYALH 78

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            MG GDVKL+ +     GW   F  F+   A++GGI+S+ ++  R
Sbjct: 79  AMGAGDVKLMAAVGAIVGWENWFGIFI-VTAVIGGIMSLILVASR 122


>gi|22127356|ref|NP_670779.1| hypothetical protein y3482 [Yersinia pestis KIM 10]
 gi|45442770|ref|NP_994309.1| hypothetical protein YP_3009 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809088|ref|YP_653004.1| hypothetical protein YPA_3097 [Yersinia pestis Antiqua]
 gi|108810718|ref|YP_646485.1| hypothetical protein YPN_0553 [Yersinia pestis Nepal516]
 gi|145597789|ref|YP_001161865.1| hypothetical protein YPDSF_0479 [Yersinia pestis Pestoides F]
 gi|150260277|ref|ZP_01917005.1| putative prepilin peptidase [Yersinia pestis CA88-4125]
 gi|165939084|ref|ZP_02227636.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166212075|ref|ZP_02238110.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167419298|ref|ZP_02311051.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425122|ref|ZP_02316875.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466372|ref|ZP_02331076.1| membrane protein [Yersinia pestis FV-1]
 gi|218927884|ref|YP_002345759.1| hypothetical protein YPO0695 [Yersinia pestis CO92]
 gi|229837377|ref|ZP_04457540.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Pestoides A]
 gi|229840589|ref|ZP_04460748.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842861|ref|ZP_04463013.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900913|ref|ZP_04516037.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Nepal516]
 gi|270487707|ref|ZP_06204781.1| peptidase, A24 (type IV prepilin peptidase) family protein
           [Yersinia pestis KIM D27]
 gi|294502761|ref|YP_003566823.1| hypothetical protein YPZ3_0651 [Yersinia pestis Z176003]
 gi|21960440|gb|AAM87030.1|AE013951_5 hypothetical [Yersinia pestis KIM 10]
 gi|45437636|gb|AAS63186.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774366|gb|ABG16885.1| membrane protein [Yersinia pestis Nepal516]
 gi|108781001|gb|ABG15059.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115346495|emb|CAL19370.1| putative membrane protein [Yersinia pestis CO92]
 gi|145209485|gb|ABP38892.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149289685|gb|EDM39762.1| putative prepilin peptidase [Yersinia pestis CA88-4125]
 gi|165913040|gb|EDR31665.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166206821|gb|EDR51301.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963292|gb|EDR59313.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167055885|gb|EDR65666.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229682252|gb|EEO78344.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Nepal516]
 gi|229690128|gb|EEO82185.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696955|gb|EEO87002.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705500|gb|EEO91510.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Pestoides A]
 gi|262360793|gb|ACY57514.1| hypothetical protein YPD4_0605 [Yersinia pestis D106004]
 gi|262364738|gb|ACY61295.1| hypothetical protein YPD8_0605 [Yersinia pestis D182038]
 gi|270336211|gb|EFA46988.1| peptidase, A24 (type IV prepilin peptidase) family protein
           [Yersinia pestis KIM D27]
 gi|294353220|gb|ADE63561.1| hypothetical protein YPZ3_0651 [Yersinia pestis Z176003]
 gi|320016742|gb|ADW00314.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 140

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 20/138 (14%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L+F   SD+   +I N+  I +  SF    F L M +    + +++ ++   I +  F F
Sbjct: 16  LLFVCYSDIRHRIISNKFIISI--SFNAIIFSLVMHH---TVSIIIPIVALFIGYIIFHF 70

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           N+MGGGDVKL+T   +      S L+F+ + A++GG++ V  L +  +            
Sbjct: 71  NVMGGGDVKLITVLLLALTAEQS-LNFIIYTAVMGGVVMVVGLLINRVD----------- 118

Query: 139 KSFLMKNKIPYGIAISMG 156
              + K  +PY +AI+ G
Sbjct: 119 ---IQKRGVPYAVAITAG 133


>gi|149200855|ref|ZP_01877830.1| peptidase A24A, prepilin type IV [Roseovarius sp. TM1035]
 gi|149145188|gb|EDM33214.1| peptidase A24A, prepilin type IV [Roseovarius sp. TM1035]
          Length = 166

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 19/159 (11%)

Query: 9   SAVFLIP---PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLL 63
           SA++ +P   P C ++ ALSDL    IPN   + ++G FL+     L  +DY     HL 
Sbjct: 9   SALWFLPFVLPVC-IWVALSDLRRMKIPNTAVLTLVGIFLVIGLMTLPLVDYAWRLSHLA 67

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTA--VWFGWTPSFLSFLFFVAILGGILSVFIL 121
           V L+  I      A  +MG GD K + + A  V  G   + L+F+F   +LG  ++   +
Sbjct: 68  VMLVAGI---AMNAVRLMGAGDAKFIAAAAPFVALG-DAATLAFIFAATLLGAFVTHRAI 123

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
               +    P +     +S+    K P G A  +GG ++
Sbjct: 124 MYSPLRRLAPDW-----QSWHAGKKFPMGFA--LGGTLA 155


>gi|149185490|ref|ZP_01863806.1| peptidase A24A, prepilin type IV [Erythrobacter sp. SD-21]
 gi|148830710|gb|EDL49145.1| peptidase A24A, prepilin type IV [Erythrobacter sp. SD-21]
          Length = 163

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 15/132 (11%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
           AL D+ +  +PN +  +ML + L  AF+ G  +  +AL L      F++ + F+     G
Sbjct: 21  ALLDVCTRKLPNILCAIMLATGLTFAFV-GGGWPALALGLAHVAAAFLLGYLFYLVGTFG 79

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG---ILSVFILTVRMITNHIPIFGMFVPK 139
            GD K  T+TA +F   P +     FVAI G    +L V++   R +           PK
Sbjct: 80  AGDAKFYTATAGFF---PLWDMLGLFVAITGAGFLLLLVWVFMKRSLRTR--------PK 128

Query: 140 SFLMKNKIPYGI 151
                 K+PYG+
Sbjct: 129 DRSDFAKLPYGV 140


>gi|260893560|ref|YP_003239657.1| peptidase A24A domain protein [Ammonifex degensii KC4]
 gi|260865701|gb|ACX52807.1| peptidase A24A domain protein [Ammonifex degensii KC4]
          Length = 250

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 22/137 (16%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF- 76
           CL+ A+  DL   +IPNR+        +L AFL G+   L+A  + +   +         
Sbjct: 107 CLLVASFIDLEHCLIPNRL--------VLVAFLGGVPLGLLARDVGLLSALLGAGAAGGF 158

Query: 77  -------AFNIMGGGDVKLLTSTAVWFGWTPSFL-SFL-FFVAILGGILSVFILTVRM-I 126
                  +   MGGGD+KL T   ++ GW  S L +FL  FVA + GI  V +LT R   
Sbjct: 159 LLLLALASRGGMGGGDIKLATVAGLFLGWPLSLLGTFLGCFVAGIWGI--VLLLTRRKGR 216

Query: 127 TNHIPIFGMFVPKSFLM 143
            +HIP FG F+   FL+
Sbjct: 217 KDHIP-FGPFLSLGFLI 232


>gi|311031471|ref|ZP_07709561.1| peptidase A24A domain protein [Bacillus sp. m3-13]
          Length = 180

 Score = 39.3 bits (90), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 20/145 (13%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L+   +SDL   +IPN++ +  LG F++  F +   ++ I  HL+   + F+I       
Sbjct: 39  LIIIVISDLHYMIIPNKILLFFLGLFIIERFFI--PFQTIPDHLIGMAVGFLIPLLVAVI 96

Query: 79  NI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
           +   MGGGDVKL        GW    L+F F  +++G I ++  + +  +   +P     
Sbjct: 97  SKGGMGGGDVKLFAVLGFVLGWELVILTF-FLSSLIGMIAALIGMLLGKVKRGVP----- 150

Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161
                      P+G +I++  LI+Y
Sbjct: 151 ----------FPFGPSIALAALITY 165


>gi|307261007|ref|ZP_07542689.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869309|gb|EFN01104.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 131

 Score = 39.3 bits (90), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 22/133 (16%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +DL   +I NRV + +L   +  ++L+   Y    L  L  ++  +I F  F  N++G G
Sbjct: 11  TDLRYRLISNRVIMALLLVIIPFSYLM---YG--TLSWLPAVLCLVIGFVLFLLNVIGAG 65

Query: 85  DVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           DVKLL   AV     P SF  F  F+    G+L             I I G    +  + 
Sbjct: 66  DVKLL---AVLMLAVPSSFAIFFLFLTACSGLL-------------IIIIGWLFYRQTIR 109

Query: 144 KNKIPYGIAISMG 156
           +  +PYGIAISMG
Sbjct: 110 EKGLPYGIAISMG 122


>gi|323702111|ref|ZP_08113779.1| peptidase A24A prepilin type IV [Desulfotomaculum nigrificans DSM
           574]
 gi|323532993|gb|EGB22864.1| peptidase A24A prepilin type IV [Desulfotomaculum nigrificans DSM
           574]
          Length = 167

 Score = 39.3 bits (90), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 46/95 (48%), Gaps = 16/95 (16%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFF-VAILGGILSVFIL--TVRMITNHIPIFGMFV 137
           MG GDVKLL     W G  P F+ F F   AI+GGI++ F L  T ++      I    V
Sbjct: 72  MGAGDVKLLAVIGAWQG--PQFVWFCFLCTAIVGGIIATFQLVRTGKLRPTFKFILFTLV 129

Query: 138 PKS-------FLMKNKI----PYGIAISMGGLISY 161
           P S        L   K+    PYG+AI+ G L +Y
Sbjct: 130 PGSPKVNAFGTLATAKVGEAFPYGVAIAAGTLATY 164


>gi|253687066|ref|YP_003016256.1| peptidase A24A prepilin type IV [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753644|gb|ACT11720.1| peptidase A24A prepilin type IV [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 183

 Score = 39.3 bits (90), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 21/161 (13%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVML-------GSFLLTAFLLGMDYELIALHLLVGLI-VF 69
           CL++   +DL    I NR  +++L        S +L +  L M      L  L G   V 
Sbjct: 16  CLLWCISTDLLVRKITNRAVLILLLGWLFFSASHVLQSGALDMLALRKTLWALPGAAAVL 75

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI--- 126
           ++ F  F    +G GDVKL++   +W G     + F+   A+ GG+L++ +  +  +   
Sbjct: 76  VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLNTVPTA 134

Query: 127 -------TNHIPIFGMFVPKSFL--MKNKIPYGIAISMGGL 158
                  TN I    + +P +    +   IPYG+AI+ G +
Sbjct: 135 VAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAM 175


>gi|87199544|ref|YP_496801.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135225|gb|ABD25967.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 157

 Score = 39.3 bits (90), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 26/168 (15%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPN----RVSIVMLGSFLLTAFLLGMDYE 56
           M ES     A  L+  F  V   +SD+ +  +PN      ++  LG+ L   FLL     
Sbjct: 1   MIESHQQAIAFLLLLGFA-VAGTISDVRNRRLPNWLCLATAVTGLGASL---FLLEYGDP 56

Query: 57  LIAL--HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL-- 112
           + A   H   G    I+    FA   +GGGD K   + A WF   P  L+ L  V +   
Sbjct: 57  IWAFPAH---GAASLIVGMALFALRWIGGGDAKFYAAVACWF---PLRLAALLLVTVTLS 110

Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
           G +L +    +R            +P S      +PYG+AI  GGL++
Sbjct: 111 GVLLLILFFAIRRFRG--------LPISRKDGASLPYGVAIGTGGLVA 150


>gi|292670460|ref|ZP_06603886.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292647870|gb|EFF65842.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 188

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 17/103 (16%)

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
           V   C    A   +GGGDVKL     +W GW  + ++ L+   +LGG  +  +L      
Sbjct: 97  VLFYCLYIAARGGLGGGDVKLAAGLGLWLGWEAAVIA-LWIAFMLGGTAAAVLLITGRRK 155

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY-PDSYLFKV 169
            H               + IP+G  +++GG I +    YL+++
Sbjct: 156 RH---------------DGIPFGPFLALGGYIGFIAGDYLWRL 183


>gi|148976665|ref|ZP_01813352.1| hypothetical protein VSWAT3_19736 [Vibrionales bacterium SWAT-3]
 gi|145964016|gb|EDK29274.1| hypothetical protein VSWAT3_19736 [Vibrionales bacterium SWAT-3]
          Length = 176

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC-FCFFAFNIMGGG 84
           D+   +IPNR+ I+++  + ++    G  ++ +A+    GL+VF       +    M  G
Sbjct: 19  DVKENIIPNRILILLVFIYFISLINGGFTWDSLAVSFF-GLVVFFFSGLALYFLRAMSPG 77

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH-IPIFGMFVPKSFLM 143
           DVKLL    ++ GW  S L   +F+ I  G++  F L   +  N  + + G F  K  L+
Sbjct: 78  DVKLLGVIGLYIGWG-SLLDVSYFILISSGVIGTFYLLYNLANNSALTVKGYFQEKLMLI 136

Query: 144 KNKIP 148
               P
Sbjct: 137 SGMSP 141


>gi|325525575|gb|EGD03365.1| peptidase A24A prepilin type IV [Burkholderia sp. TJI49]
          Length = 168

 Score = 38.9 bits (89), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 20/154 (12%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
           + AA +DL S  IPNRV  V L   L+    L       A  L      F +   F+   
Sbjct: 8   IVAASTDLASRRIPNRVVAVGLAGALIAQCALHGVAAGTAGWLAGAATGFGLLLPFYLLR 67

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA--ILGGILSV-FILT---VRMITNHIPIF 133
            M  GDVKL+ +   W G  P+ ++F   +A  +LGGI +V F +    +R +  ++   
Sbjct: 68  GMAAGDVKLMLAVGAWVG--PA-MAFRIVLAAFVLGGIGAVGFAIAHGRLRQMAANVRAL 124

Query: 134 GMFVPKS-----------FLMKNKIPYGIAISMG 156
            M  P             F     +PYG+AI+ G
Sbjct: 125 IMRRPGRPRAATADGHGPFESVGTLPYGVAIAAG 158


>gi|78062908|ref|YP_372816.1| peptidase A24A, prepilin type IV [Burkholderia sp. 383]
 gi|77970793|gb|ABB12172.1| Peptidase A24A, prepilin type IV [Burkholderia sp. 383]
          Length = 157

 Score = 38.9 bits (89), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 11/150 (7%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
           A  DL    + NR  +     + + A L    +  +A H+  G  + ++         +G
Sbjct: 17  AAQDLRDRRLSNRGVLAFAALYFVAAALARDGFAPLAGHVATGAAMLLLFGGMRHAGWIG 76

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAI-LGGILSVFILTVRMITNHIPIFGMFVPKSF 141
           GGDVKL  +  +W G  P+ L+F     +  GG+L    L         P+         
Sbjct: 77  GGDVKLAAAVFLWAG--PA-LAFPVLTGVGAGGVLCGVALLASRPRRAAPV-------RA 126

Query: 142 LMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
           +    +PYG+A+++GG ++   S+   V+L
Sbjct: 127 VATRGVPYGVALALGGTLAVWASFPHTVSL 156


>gi|22298019|ref|NP_681266.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Thermosynechococcus elongatus BP-1]
 gi|22294197|dbj|BAC08028.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Thermosynechococcus elongatus BP-1]
          Length = 248

 Score = 38.9 bits (89), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 46  LTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN--IMGGGDVKLLTSTAVWFGWTPSFL 103
           LT  L G+   +IA  + + L   I      AFN  +MGGGD KL      W GW    +
Sbjct: 126 LTTGLGGITEGIIAAVIGIWLFDLIRWGGAIAFNQEVMGGGDGKLAAMIGAWLGWQGLLV 185

Query: 104 SFLFFVAILGGILSVFILTVRMITNHIPI-FGMFV 137
           +F F    LGG++  F + +  I    PI FG F+
Sbjct: 186 TF-FLACALGGLMGGFGIALGWIQRRQPIPFGPFL 219


>gi|189485485|ref|YP_001956426.1| A24A-like peptidase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287444|dbj|BAG13965.1| A24A-like peptidase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 218

 Score = 38.9 bits (89), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 29/164 (17%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL---LGMDYELIALHLLVG-------- 65
           F L+  + +D F  +IP  V I ++ +  + +F+   LG  Y    ++ ++G        
Sbjct: 57  FSLISVSTTDYFHRIIPAIVPIFLIITGFIFSFMNSALGETYPSRFINSVLGILTGGGVL 116

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           L+   +    +    +GGGD+KL+    V+ GW  +  + +F  A++GGI  + +L  + 
Sbjct: 117 LVAGFLGQLIYKKEAIGGGDIKLMAGVGVFIGWEKALFA-VFIAAVMGGIAGLILLAAKK 175

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY--PDSYLF 167
           I                 K  IP+G  +S    I+   P  Y+F
Sbjct: 176 IEK---------------KGYIPFGPFLSAASFITLFIPQPYIF 204


>gi|160897517|ref|YP_001563099.1| peptidase A24A prepilin type IV [Delftia acidovorans SPH-1]
 gi|160363101|gb|ABX34714.1| peptidase A24A prepilin type IV [Delftia acidovorans SPH-1]
          Length = 189

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 11/111 (9%)

Query: 55  YELIALHLLVGLIV-FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
           +++ A + L GL+  F++   F+A   MG GDVK      +WFG +   L      ++L 
Sbjct: 51  FQVSAWNALAGLLAGFVVLLPFYALRWMGAGDVKFGAVAGLWFGLSFDLLLIWTGGSLLA 110

Query: 114 GILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG--GLISYP 162
           G+  + +L++R +++         P    ++ ++P   A  +   G  S P
Sbjct: 111 GLHGLLVLSLRHLSHS--------PTGLWLQARLPLAWAARLAPLGAASQP 153


>gi|327538083|gb|EGF24773.1| hypothetical protein RBWH47_03140 [Rhodopirellula baltica WH47]
          Length = 234

 Score = 38.5 bits (88), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L  A   DL +  IP+ +S V++G   + + LLG     I   L  G++  +I    F F
Sbjct: 106 LAIATACDLRTREIPDWIS-VLIGVVAIVSSLLGWLGLSIVWVLAGGVVGLVIASALFRF 164

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
             +GGGD KL+ + A+  G     L  LF +AI GG+LS
Sbjct: 165 AKLGGGDGKLIIALAMLVGPV-GILIVLFGMAITGGVLS 202


>gi|261402262|ref|YP_003246486.1| Peptidase A24A domain protein [Methanocaldococcus vulcanius M7]
 gi|261369255|gb|ACX72004.1| Peptidase A24A domain protein [Methanocaldococcus vulcanius M7]
          Length = 340

 Score = 38.5 bits (88), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 17/132 (12%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL-I 67
            AV++I    L+ A+++D+   +IP++  I+M          L + Y    ++ ++    
Sbjct: 5   DAVYIINFILLILASITDIKERIIPHKYVIIM------AVLNLIVGYHYFGINAVIAFFT 58

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF-----LFFVAI---LGGILSVF 119
            FI+C        MGGGDVKL T+ A  F +  SF+ +     L+ +AI   +  +  ++
Sbjct: 59  TFILCLILSIG--MGGGDVKLFTALAPIFAYPDSFIFYVPKYILYLIAISMFIAAVFPMY 116

Query: 120 ILTVRMITNHIP 131
            + VR   + IP
Sbjct: 117 KILVRYWKDIIP 128


>gi|303239929|ref|ZP_07326452.1| peptidase A24A domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592639|gb|EFL62364.1| peptidase A24A domain protein [Acetivibrio cellulolyticus CD2]
          Length = 267

 Score = 38.5 bits (88), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 19/100 (19%)

Query: 62  LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
           L+VGLI  +I   +   + MGGGD+K+     ++ GW  +F++ L  + +L G++S+ ++
Sbjct: 171 LVVGLIGMLI---YKTDDAMGGGDIKIFAPIGIFLGWKMTFIALLASI-VLAGLISLILV 226

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            +++                  K+ IP+G  I MG LI+Y
Sbjct: 227 IIKVKGR---------------KSTIPFGPFIVMGTLITY 251


>gi|115361030|ref|YP_778167.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
 gi|115286358|gb|ABI91833.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
          Length = 180

 Score = 38.5 bits (88), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 23/174 (13%)

Query: 6   MVFSAVFLIP-PFCL----VFAALSDLFSAMIPNR-VSIVMLGSFLLTAFLLGMDYELIA 59
           MV  A    P P C+    + AA +D+ S  IPNR V++ ++G+ +    L G+    +A
Sbjct: 1   MVLPAALPYPVPLCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCTLHGIQAGALA 60

Query: 60  LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILS 117
                    F +   F+    M  GDVKL+ +   W G   +F   L  F V  +G I  
Sbjct: 61  WLAGA-ATGFGLLLPFYLLRGMAAGDVKLMLAIGAWVGAQMTFYIVLATFLVGGIGAI-G 118

Query: 118 VFILTVRMITNHIPIFGMFV-------------PKSFLMKNKIPYGIAISMGGL 158
             +L  RM      ++ +               P  F     +PYG+AI+ G L
Sbjct: 119 FALLRGRMRQMCANVWALIAHRSTGAYAGATDGPVEFASVGALPYGVAIAAGTL 172


>gi|92116345|ref|YP_576074.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14]
 gi|91799239|gb|ABE61614.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14]
          Length = 159

 Score = 38.5 bits (88), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 6/84 (7%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIAL--HLLVGLIVFIICFCFF 76
           V+ A  DL   +IP+R+++++  + ++  A L G +     L   +++G +V+++ + +F
Sbjct: 18  VWLAWIDLRDGIIPDRLNLLVAATGVVRMAALAGWEPAGARLCEGVVIGAVVWLLRWLYF 77

Query: 77  AFNIMGG---GDVKLLTSTAVWFG 97
            +  + G   GDVKLL ++AVW G
Sbjct: 78  KWRKLQGLGLGDVKLLAASAVWIG 101


>gi|295700372|ref|YP_003608265.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1002]
 gi|295439585|gb|ADG18754.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1002]
          Length = 180

 Score = 38.5 bits (88), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 18/155 (11%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI-ALHLLVGLIV-FIICFCFFA 77
           + AA +DL +  IPNR  +++LG  +  A  + +   L  AL  L G    F +   F+ 
Sbjct: 20  IVAASTDLTARRIPNR--LIVLGLSVALAVQMSIHGPLAGALDWLSGAACGFALLMPFYL 77

Query: 78  FNIMGGGDVKLLTSTAVWFG----WTPSFLSFL------FFVAILGGILSVFILTVRMIT 127
              M  GDVKLL     W G    W  +  +FL        + +  G  +  +  +R + 
Sbjct: 78  LRGMAAGDVKLLMMIGAWVGPALTWRIALATFLIGGLWSLLIVLCRGRFARLLANLRQLI 137

Query: 128 NHIPIFGMFVPKSFLMKN----KIPYGIAISMGGL 158
             + +  +  P     ++     IPYG+AI+ G L
Sbjct: 138 GGLAVAPLRRPSLIDARSGSVGSIPYGVAIAAGTL 172


>gi|261820212|ref|YP_003258318.1| peptidase A24A prepilin type IV [Pectobacterium wasabiae WPP163]
 gi|261604225|gb|ACX86711.1| peptidase A24A prepilin type IV [Pectobacterium wasabiae WPP163]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 21/161 (13%)

Query: 18  CLVFAALSDLFSAMIPNR-VSIVMLGSFLLTAF--LLGMDYELIALHLLV-----GLIVF 69
           CL++   +DL    I N+ V I++LG    +A   L     +++AL  ++        V 
Sbjct: 16  CLLWCISTDLLVRKITNQAVLILLLGWLFFSALYVLQSGALDMVALRKMLWALPGAAAVL 75

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI--- 126
           ++ F  F    +G GDVKL++   +W G     + F+   A+ GG+L++ +  +  +   
Sbjct: 76  VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FIMVTALAGGVLALSLPLLNTVPTA 134

Query: 127 -------TNHIPIFGMFVPKSF--LMKNKIPYGIAISMGGL 158
                  TN I    + +P +    +   IPYG+AI+ G +
Sbjct: 135 VALGVQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAI 175


>gi|258515846|ref|YP_003192068.1| peptidase A24A domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779551|gb|ACV63445.1| peptidase A24A domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 248

 Score = 38.1 bits (87), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 5/116 (4%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA-LHLLVGLIVFIICFCFFA 77
           LV AA  DL   +IP++V +  L   +   FL    Y+LI+ L       + ++     A
Sbjct: 108 LVVAAFIDLEHGIIPDQVVVAALVLGVPVLFL-ASPYKLISGLTGFAAAGIIMLVIALLA 166

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT--VRMITNHIP 131
              MGGGDVKL     ++ GW P+ L+ LF   + GG++ + +L    +   +H+P
Sbjct: 167 PGGMGGGDVKLSAVIGLYLGW-PNVLAGLFLAFLSGGLVGIVLLCSGRKKRKDHVP 221


>gi|313895200|ref|ZP_07828757.1| peptidase, A24 family [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976095|gb|EFR41553.1| peptidase, A24 family [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 189

 Score = 38.1 bits (87), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 18/102 (17%)

Query: 62  LLVGLIVFIICFCFF--AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
           +L G +  ++ +C +  A   MGGGDVK      +W GW  + ++ ++   ++GG+++ F
Sbjct: 90  ILGGTLCGVLFYCLYIAARGGMGGGDVKFALGIGLWLGWESAIIA-VWTAFLIGGMMAAF 148

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
           +L  R                   ++ +P+G  ++ GG +++
Sbjct: 149 LLLTRRKGR---------------RDALPFGPCLAAGGYLAF 175


>gi|332982938|ref|YP_004464379.1| peptidase A24A prepilin type IV [Mahella australiensis 50-1 BON]
 gi|332700616|gb|AEE97557.1| peptidase A24A prepilin type IV [Mahella australiensis 50-1 BON]
          Length = 145

 Score = 38.1 bits (87), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 23/131 (17%)

Query: 21  FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-----LLVGLIVFIICFCF 75
           +AA +DL    I + V         LT  + G  Y+L+  H     L+    VF + F  
Sbjct: 18  YAAATDLKRREIDHWVP--------LTVAVYGTLYQLLYAHRLPEALICTAAVFAVLFAV 69

Query: 76  FAFNI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF--ILTVRMITNHIP 131
           FA +    GGGDVKLLTS A+++G   +    +F   I+G I  V   I+T R +    P
Sbjct: 70  FAVSNGGFGGGDVKLLTSLALFYG--SNIFVVVFASCIIGAIYGVIRAIVTRRGLKTESP 127

Query: 132 IFGMFVPKSFL 142
               F P  FL
Sbjct: 128 ----FAPAVFL 134


>gi|89053480|ref|YP_508931.1| peptidase A24A, prepilin type IV [Jannaschia sp. CCS1]
 gi|88863029|gb|ABD53906.1| peptidase A24A prepilin type IV [Jannaschia sp. CCS1]
          Length = 167

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 21/173 (12%)

Query: 9   SAVFLIP---PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLV 64
            A++ +P   P C ++ ALSDL    IPN   + + G FL+T  F L MD  L  L  L 
Sbjct: 9   EALWFLPFAIPIC-IWVALSDLRQMRIPNVAVLALTGGFLITGLFALPMDAYLWRLAALG 67

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
             IV +  F   +  ++G GD K   + A +    P    +LFF+A+   +L    +T R
Sbjct: 68  --IVLLAGFVITSLGLVGAGDSKFAAAMAPFI--APG--DYLFFLALFSLVLIGSWITHR 121

Query: 125 MITNHIPIFGMFVPKSFLMKNKI-PYGIAISMGGLISYPDSYLFKVALMGLSA 176
                  +       S   + K+ P G+A++ G L+ Y         +MGLSA
Sbjct: 122 SAGRVPAVRRATAHWSSWEQGKLFPMGVALA-GALVIY--------LMMGLSA 165


>gi|300704928|ref|YP_003746531.1| prepilin peptidase transmembrane protein [Ralstonia solanacearum
           CFBP2957]
 gi|299072592|emb|CBJ43942.1| putative prepilin peptidase transmembrane protein [Ralstonia
           solanacearum CFBP2957]
          Length = 176

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 34/165 (20%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI-------- 70
           +  AA SD+ +  IPN     ++GS L+ A +     + +A  L  G + ++        
Sbjct: 16  IAIAAASDVRARRIPNW----LVGSGLVAALI----GQCLAQGLAAGGMAWLGGTAVGMG 67

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVFILTVRMITNH 129
           +C   +A   MG GDVKL+ +   + G   +F ++F+ F+A  GG+L++ ++ +R     
Sbjct: 68  MCIGIYALGGMGAGDVKLMGAIGAFMGPFGAFHVAFVSFLA--GGVLALVMVLLRREGQR 125

Query: 130 -----------IPIFGMFVPKSFLMKN----KIPYGIAISMGGLI 159
                      +P  G  +P     K     ++PY +A + G L+
Sbjct: 126 SLAGVSTLLLSLPFGGKAMPSQHGEKRSSTIQLPYAVAFAAGTLL 170


>gi|320529765|ref|ZP_08030843.1| peptidase, A24 family protein [Selenomonas artemidis F0399]
 gi|320138004|gb|EFW29908.1| peptidase, A24 family protein [Selenomonas artemidis F0399]
          Length = 196

 Score = 37.7 bits (86), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 18/102 (17%)

Query: 62  LLVGLIVFIICFCFF--AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
           +L G +  ++ +C +  A   MGGGDVK      +W GW  + ++ ++   ++GG+++ F
Sbjct: 97  ILGGTLCGVLFYCLYIAARGGMGGGDVKFALGIGLWLGWESAIIA-VWTAFLIGGMMAAF 155

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
           +L  R                   ++ +P+G  ++ GG +++
Sbjct: 156 LLLTRRKGR---------------RDALPFGPCLAAGGDLAF 182


>gi|227326300|ref|ZP_03830324.1| hypothetical protein PcarcW_02894 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 183

 Score = 37.7 bits (86), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 21/161 (13%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVML-------GSFLLTAFLLGMDYELIALHLLVGLI-VF 69
           CL++   +DL    I N+  +++L        S +L A  L M      L  L G   V 
Sbjct: 16  CLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQAGALDMLALRKMLWALPGAAAVL 75

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI--- 126
           ++ F  F    +G GDVKL++   +W G     + F+   A+ GG+L++ +  +  +   
Sbjct: 76  VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLNTVPTA 134

Query: 127 -------TNHIPIFGMFVPKSFL--MKNKIPYGIAISMGGL 158
                  TN I    + +P +    +   IPYG+AI+ G +
Sbjct: 135 VAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAM 175


>gi|261251284|ref|ZP_05943858.1| type IV prepilin peptidase TadV/CpaA [Vibrio orientalis CIP 102891]
 gi|260938157|gb|EEX94145.1| type IV prepilin peptidase TadV/CpaA [Vibrio orientalis CIP 102891]
          Length = 152

 Score = 37.7 bits (86), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 18/159 (11%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M    ++   V +I   C V + +SD     +PN++      S  +T F+    +     
Sbjct: 1   MNLDNIIEITVVIINIVCAVQSCISDHKHRTLPNKIC----KSLFITNFIASFYFGYFIQ 56

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVF 119
              +  I+F++    +     G GD+KLL + ++  G  P   ++ L  V  LGG   V 
Sbjct: 57  SATITSIIFLVLLIVWLIGGFGAGDIKLLCAFSI--GIKPELTIACLVLVGFLGGFQLVV 114

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
           +  V ++T           K+ L +  IPYGI IS+ G+
Sbjct: 115 MYLVGLMT-----------KTNLFEKGIPYGIPISISGV 142


>gi|172065270|ref|YP_001815982.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
 gi|171997512|gb|ACB68429.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
          Length = 179

 Score = 37.7 bits (86), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 22/163 (13%)

Query: 16  PFCL----VFAALSDLFSAMIPNR-VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           P C+    + AA +D+ S  IPNR V++ ++G+ +    L G+    +A         F 
Sbjct: 11  PLCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCALHGIQAGALAWLAGA-ATGFG 69

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGI------------- 115
           +   F+    M  GDVKL+ +   W G   +F   L  F V  +G I             
Sbjct: 70  LLLPFYLLRGMAAGDVKLMLAIGAWVGAQMTFYIVLATFLVGGIGAIGFALLRGRMRQMC 129

Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
            +V+ L  R  T          P  F     +PYG+AI+ G L
Sbjct: 130 ANVWTLIARRSTGAYA-GATDGPVEFASVGALPYGVAIAAGTL 171


>gi|298674644|ref|YP_003726394.1| peptidase A24B, FlaK domain-containing protein [Methanohalobium
          evestigatum Z-7303]
 gi|298287632|gb|ADI73598.1| Peptidase A24B, FlaK domain protein [Methanohalobium evestigatum
          Z-7303]
          Length = 255

 Score = 37.7 bits (86), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 13/87 (14%)

Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL---HLLVGL 66
           +F   PF L+++  SDL +  +PN+     L SF+L   ++ + Y+LI     HL+  L
Sbjct: 6  KIFFFLPF-LLYSCYSDLKTRRVPNK-----LWSFMLVPGMIFVIYDLINYGFAHLVHLL 59

Query: 67 IVFIICFCF----FAFNIMGGGDVKLL 89
          I F+  F F    F+FN  GG D KL+
Sbjct: 60 ISFVFIFGFVYVLFSFNAFGGADAKLM 86


>gi|171920999|gb|ACB59182.1| TadV [Actinobacillus suis ATCC 33415]
          Length = 143

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 22/137 (16%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +DL   +I NR+ + +L   +  ++L+        L  L  L+   I F  F FNI+G G
Sbjct: 22  TDLRYRLISNRIIMALLLVTIPFSYLVHG-----TLFWLPALLCLAIGFILFMFNIIGAG 76

Query: 85  DVKLLTSTAVWFGWTPS-FLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           DVKLL   AV     PS F  F  F+    G+L +             I G    +  + 
Sbjct: 77  DVKLL---AVLMLAIPSHFAVFFLFLTACAGLLLI-------------IIGWLFYRQSIR 120

Query: 144 KNKIPYGIAISMGGLIS 160
           +  +PYGIAIS+G L +
Sbjct: 121 EKGLPYGIAISVGFLTT 137


>gi|198282505|ref|YP_002218826.1| peptidase A24A domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665857|ref|YP_002424695.1| type IV pilus prepilin peptidase PilD [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247026|gb|ACH82619.1| peptidase A24A domain protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518070|gb|ACK78656.1| type IV pilus prepilin peptidase PilD [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 266

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 19/118 (16%)

Query: 13  LIPPFCLVFAALS----DLFSAMIPNRVSIV-MLGSFLLTA---FLLGMDYELIALHLLV 64
           L+P     +A L+    DL + ++P+R++   ML   LL     F  G+   +  L  L+
Sbjct: 104 LLPALVFTWALLALTMIDLETQLLPDRLTKPGMLAGLLLNGSALFWPGLAL-VTPLDALL 162

Query: 65  GLIV-----FIICFCFF---AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
           G+I+     +++   ++     + MGGGD+KLL     W GW   FL+   F+A LGG
Sbjct: 163 GMIIGYGSLWLLATVYYRIAGRHGMGGGDLKLLGMIGAWLGWQAVFLT--LFIAALGG 218


>gi|172062957|ref|YP_001810608.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
 gi|171995474|gb|ACB66392.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
          Length = 159

 Score = 37.4 bits (85), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 7/150 (4%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           V L     LV  A+ DL    + NR  +     + + A L        A H+     + +
Sbjct: 5   VQLTATLVLVSIAMQDLRERRVSNRAVLAFAMLYPVAAALGREGLAPFAGHVATAAAMLV 64

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           +         +GGGDVKL  +  +W G  P  L  L  V   G    + +L        +
Sbjct: 65  VFGALRHAGWLGGGDVKLAAAVFLWAG-PPLALPVLTIVGTSGAACGLAMLAGVARQRRV 123

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                  P   +    +PYG+A++ GG ++
Sbjct: 124 ------APAHPMATRGVPYGVALAFGGALA 147


>gi|289192798|ref|YP_003458739.1| Peptidase A24A domain protein [Methanocaldococcus sp. FS406-22]
 gi|288939248|gb|ADC70003.1| Peptidase A24A domain protein [Methanocaldococcus sp. FS406-22]
          Length = 339

 Score = 37.4 bits (85), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 32/126 (25%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           S V++I    L+ A+++D+   +IP++ +I M                 I ++L+VG   
Sbjct: 5   SVVYIINFILLILASITDIKERIIPHKYTIAM-----------------IIMNLVVGYYY 47

Query: 69  F----IICF------CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF-----LFFVAILG 113
           F    II F      C      MGGGDVKL T+ A  F +  SF+ +     L+ +AI  
Sbjct: 48  FGFNAIIAFFSTLILCLILSVGMGGGDVKLFTALAPIFAYPNSFVFYIPKYILYLIAISM 107

Query: 114 GILSVF 119
            I +VF
Sbjct: 108 FIAAVF 113


>gi|227114874|ref|ZP_03828530.1| hypothetical protein PcarbP_18015 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 183

 Score = 37.4 bits (85), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 21/161 (13%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVML-------GSFLLTAFLLGMDYELIALHLLVGLI-VF 69
           CL++   +DL    I N+  +++L        S +L +  L M     AL  L G   V 
Sbjct: 16  CLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQSGALDMLALQKALWALPGAAAVL 75

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++ F  F    +G GDVKL++   +W G     + F+   A+ GG+L++ +  +  +   
Sbjct: 76  VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLNTVPTA 134

Query: 130 IP--------IFGMFVPKSFL----MKNKIPYGIAISMGGL 158
           +         IF   +P        +   IPYG+AI+ G +
Sbjct: 135 VAMGIQTANRIFKSRLPMPPALPADLSQGIPYGVAIAFGAM 175


>gi|221197778|ref|ZP_03570824.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2M]
 gi|221204664|ref|ZP_03577681.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2]
 gi|221175521|gb|EEE07951.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2]
 gi|221181710|gb|EEE14111.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2M]
          Length = 166

 Score = 37.4 bits (85), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 6/117 (5%)

Query: 21  FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC-FFAFN 79
           F A SD+    +PN + +  L    L+AFL    + +  L   +G+++ +I F  FF   
Sbjct: 16  FVAASDVRVRRVPNSLVLGGLALAFLSAFLNANPFGISPLSATIGMLIGLIAFVPFFLLR 75

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
           +MG  D+K+      W G     L +L+ VA L   +   +L   M+ +  PI  ++
Sbjct: 76  VMGAADLKVFAVLGAWCG--AHALLWLWIVASLAAGIHALVL---MLVSRTPIRALW 127


>gi|126208039|ref|YP_001053264.1| flp operon protein B [Actinobacillus pleuropneumoniae L20]
 gi|126096831|gb|ABN73659.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 142

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 22/133 (16%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +DL   +I NRV + +L   +  ++L+   Y    L  L  ++  +I F  F  N++G G
Sbjct: 22  TDLRYRLISNRVIMALLLVIIPFSYLM---YG--TLSWLPAVLCLVIGFVLFLLNVIGAG 76

Query: 85  DVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           DVKLL   AV     P SF  F  F+    G+L             I I G    +  + 
Sbjct: 77  DVKLL---AVLMLAVPSSFAIFFLFLTACSGLL-------------IIIIGWLFYRQTIR 120

Query: 144 KNKIPYGIAISMG 156
           +  +PYGIAIS G
Sbjct: 121 EKGLPYGIAISTG 133


>gi|307256576|ref|ZP_07538357.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306864986|gb|EFM96888.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 131

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 22/133 (16%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +DL   +I NRV + +L   +  ++L+   Y    L  L  ++  +I F  F  N++G G
Sbjct: 11  TDLRYRLISNRVIMALLLVIIPFSYLM---YG--TLSWLPAVLCLVIGFVLFLLNVIGAG 65

Query: 85  DVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           DVKLL   AV     P SF  F  F+    G+L             I I G    +  + 
Sbjct: 66  DVKLL---AVLMLAVPSSFAIFFLFLTACSGLL-------------IIIIGWLFYRQTIR 109

Query: 144 KNKIPYGIAISMG 156
           +  +PYGIAIS G
Sbjct: 110 EKGLPYGIAISTG 122


>gi|11498541|ref|NP_069769.1| hypothetical protein AF0936 [Archaeoglobus fulgidus DSM 4304]
 gi|2649660|gb|AAB90302.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 240

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 19  LVFAALSDLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII---CFC 74
           L++A   DL S ++PNRV   ++L S  +T + L +   LI  +++ G+ V ++    + 
Sbjct: 14  LLYACKLDLESRIVPNRVWKRMLLVSLPITVYQLFLGKHLIFEYMIAGIFVVMVIALSYA 73

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
            +     GG D K + + AV F + P+F  F
Sbjct: 74  LYLIGAYGGADAKAIMALAVIFPFYPTFNGF 104


>gi|322831057|ref|YP_004211084.1| Prepilin peptidase [Rahnella sp. Y9602]
 gi|321166258|gb|ADW71957.1| Prepilin peptidase [Rahnella sp. Y9602]
          Length = 277

 Score = 37.0 bits (84), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 29/144 (20%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI----- 80
           DL + ++P+R+++ +L + LL   L G    +   + L G +   +   F  +++     
Sbjct: 142 DLATYLLPDRLTLPLLWAGLLVHSLYG---SVTLQNALYGAVAGYLALWFLYWSVKLVSG 198

Query: 81  ---MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
              MG GD KLL +   W GW    L +L  +A L GI  VF L    I           
Sbjct: 199 KEGMGYGDFKLLAALGAWVGW--QMLPYLCILAALAGI--VFTLVRVSI----------- 243

Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161
              + M  + P+G  +++ G + Y
Sbjct: 244 ---YKMSEQTPFGPCLALAGALIY 264


>gi|156975626|ref|YP_001446533.1| prepilin peptidase CpaA [Vibrio harveyi ATCC BAA-1116]
 gi|156527220|gb|ABU72306.1| hypothetical protein VIBHAR_03359 [Vibrio harveyi ATCC BAA-1116]
          Length = 147

 Score = 37.0 bits (84), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 8/79 (10%)

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
             ++GGGDVKL+ + ++    T S L  L FV I GGIL+V  L + +  +H+   G  +
Sbjct: 66  LGVLGGGDVKLIAAFSLSLP-TQSLLEALIFVGIYGGILAVIYL-ILLRPSHVTGEGD-I 122

Query: 138 PKSFLMKNKIPYGIAISMG 156
           P+  L     PYG+AI  G
Sbjct: 123 PQIGL-----PYGVAICCG 136


>gi|87199103|ref|YP_496360.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134784|gb|ABD25526.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 166

 Score = 37.0 bits (84), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 17/105 (16%)

Query: 58  IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS-FLSFLFFVAILGGIL 116
           IA+ + +    F++    FA  +MGGGDVKLL++ A+W    P  F+  L  +++LGG L
Sbjct: 62  IAMQVGLAAATFLVLAGLFALRLMGGGDVKLLSALALWL--APGMFVKLLVIMSLLGGFL 119

Query: 117 S-VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
           + VF      +T                  KIPYG+AI+  GLI+
Sbjct: 120 TIVFAAWHYTVTRR-------------RDAKIPYGVAIACAGLIT 151


>gi|218710409|ref|YP_002418030.1| hypothetical protein VS_2446 [Vibrio splendidus LGP32]
 gi|218323428|emb|CAV19605.1| hypothetical protein VS_2446 [Vibrio splendidus LGP32]
          Length = 176

 Score = 37.0 bits (84), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L+  ++ D+    IPN++ I+    + L+ F     ++   + L   ++ F     F+  
Sbjct: 12  LIAVSVYDVEKHRIPNKILILFFVFYFLSMFNSNYTFDSFLMSLFGSVVFFCFGLLFYFL 71

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
             M  GDVKLL    ++ GW    L   +F+ +  G++ VF L
Sbjct: 72  RAMSAGDVKLLGVVGMYLGWG-QLLDASYFILVSSGVVGVFYL 113


>gi|163814846|ref|ZP_02206234.1| hypothetical protein COPEUT_00996 [Coprococcus eutactus ATCC 27759]
 gi|158449785|gb|EDP26780.1| hypothetical protein COPEUT_00996 [Coprococcus eutactus ATCC 27759]
          Length = 169

 Score = 37.0 bits (84), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 18/163 (11%)

Query: 11  VFLIPPFCLV-FAALSDLFSAMIPNR-VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           +FLIP    V  A ++D  S  IPN+ V++ ++  F+++A + G+   L  L    G ++
Sbjct: 15  IFLIPLIATVSMAVVTDFRSWKIPNKLVAVGLIQGFVVSAVVRGLPEGL--LSSAKGCVI 72

Query: 69  -FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV------FIL 121
             +I +  F    +G GD+KLL     + G     +    F+A  GG++S+      FIL
Sbjct: 73  PVVILYVLFLIKALGAGDIKLLAVAGSFVGLDIYRVMIYSFLA--GGVISIIYLLKEFIL 130

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
           +   ITN   +       S + K ++ +  AI +GG++ Y  +
Sbjct: 131 S---ITNRKKLSDR-TECSRVGKRRVHFSAAI-LGGILYYATT 168


>gi|225174802|ref|ZP_03728800.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1]
 gi|225169929|gb|EEG78725.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1]
          Length = 185

 Score = 37.0 bits (84), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 17/102 (16%)

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV------RMITNH 129
           F F  +G GDVK+L     + G+ P  +  L   AI+GG+ +++ +        R+ T  
Sbjct: 68  FVFGGLGAGDVKMLGMIGAFTGY-PVVIQVLLVSAIVGGVFALYTMLRQGKMFKRLKTFF 126

Query: 130 IPIFGMFVPKSFLM----------KNKIPYGIAISMGGLISY 161
           + IF     +  +           KN IPYG+A+S+G +I Y
Sbjct: 127 LGIFCAAAARKTVHMNNLDEKDAGKNAIPYGVALSVGVIIVY 168


>gi|24114271|ref|NP_708781.1| hypothetical protein SF3007 [Shigella flexneri 2a str. 301]
 gi|24053425|gb|AAN44488.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|281602357|gb|ADA75341.1| putative tight adherance operon protein [Shigella flexneri 2002017]
          Length = 155

 Score = 37.0 bits (84), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 20/144 (13%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L+F +  D+   +I +R  +V+     L   L      L+A        V ++ F  F+ 
Sbjct: 26  LIFISWGDILLRIISHRYLLVLTVLIFLALILQHQKPNLVA-----AGSVLLVGFFLFSA 80

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
            I+GGGDVKLLT  +               +AI    L+ F++ +      + + G+   
Sbjct: 81  GIIGGGDVKLLTVLS---------------LAIDEHELANFLVAMTFCGALVVLAGLLFF 125

Query: 139 KSFLMKNKIPYGIAISMGGLISYP 162
           +  + +N +PY + IS+  L++YP
Sbjct: 126 RKSIRENGVPYAVPISLAFLLTYP 149


>gi|90412178|ref|ZP_01220184.1| Hypothetical membrane protein [Photobacterium profundum 3TCK]
 gi|90326902|gb|EAS43287.1| Hypothetical membrane protein [Photobacterium profundum 3TCK]
          Length = 145

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 12/82 (14%)

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV-FILTVRMITNHIPIFG 134
           F FNI+  GD KL ++ AV        +S L+F ++ GG+++V +++  ++I    P   
Sbjct: 65  FYFNIVAAGDGKLASAFAVALS-PQQLISALYFTSLFGGVVAVIYLIKYQLIQRSSP--- 120

Query: 135 MFVPKSFLMKNKIPYGIAISMG 156
                       +PYG+AI+ G
Sbjct: 121 -------EKARGLPYGVAIACG 135


>gi|296110011|ref|YP_003616960.1| Peptidase A24A domain protein [Methanocaldococcus infernus ME]
 gi|295434825|gb|ADG13996.1| Peptidase A24A domain protein [Methanocaldococcus infernus ME]
          Length = 331

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 11/90 (12%)

Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI-VFI 70
          ++I  F L+ A+++D+   +IP++  I M   FL+    L + Y       ++G+I  FI
Sbjct: 8  YIINFFILILASITDIKEKIIPHKYVIAM---FLIN---LPIGYYFFGFDAIIGMISTFI 61

Query: 71 ICFCFFAFNI-MGGGDVKLLTSTAVWFGWT 99
          +C      +I MGGGDVKL T+ A  F + 
Sbjct: 62 LCLIL---SIGMGGGDVKLFTALAPIFSYD 88


>gi|313648076|gb|EFS12522.1| type IV leader peptidase family protein [Shigella flexneri 2a str.
           2457T]
          Length = 147

 Score = 36.6 bits (83), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 15/95 (15%)

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
           V ++ F  F+  I+GGGDVKLLT  +               +AI    L+ F++ +    
Sbjct: 62  VLLVGFFLFSAGIIGGGDVKLLTVLS---------------LAIDEHELANFLVAMTFCG 106

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
             + + G+   +  + +N +PY + IS+  L++YP
Sbjct: 107 ALVVLAGLLFFRKSIRENGVPYAVPISLAFLLTYP 141


>gi|300788935|ref|YP_003769226.1| leader peptidase (prepilin peptidase)/N-methyltransferase
           [Amycolatopsis mediterranei U32]
 gi|299798449|gb|ADJ48824.1| leader peptidase (prepilin peptidase)/N-methyltransferase
           [Amycolatopsis mediterranei U32]
          Length = 206

 Score = 36.6 bits (83), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 24/137 (17%)

Query: 22  AALSDLFSAMIPNRVSIVMLGSFLLTAF---LLGMDYELIALHLLVGLIVF--IICFCFF 76
           AA  D     IP+R+S+ + G+ +L A    + G D     L  L G  V+   +   + 
Sbjct: 70  AAAVDAVEHRIPDRLSLPLCGASILAAVGAAIAGHDVG-SGLRALAGGAVWGAALLVSYL 128

Query: 77  AFNIMGGGDVKLLTSTAV---WFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
                G GDVKL  S  +   WFGW            +LGG L+ +ILT         + 
Sbjct: 129 VTGQPGPGDVKLTPSVGILLGWFGWA----------WVLGGFLAAYILTAVA-----GVV 173

Query: 134 GMFVPKSFLMKNKIPYG 150
           G+ + +    + ++P G
Sbjct: 174 GVLLRRYSFREGQVPMG 190


>gi|302391025|ref|YP_003826845.1| peptidase A24A prepilin type IV [Acetohalobium arabaticum DSM 5501]
 gi|302203102|gb|ADL11780.1| peptidase A24A prepilin type IV [Acetohalobium arabaticum DSM 5501]
          Length = 160

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 14/141 (9%)

Query: 26  DLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLL-VGLIVFIICFCFFAFNIMGG 83
           D+   +IPN ++  +ML   ++   + G    L +L  L VGL +F+I F       +G 
Sbjct: 16  DIKDKIIPNWLTFSLMLLGLIINLSIDGWSGLLFSLQGLGVGLAIFLIPFVLGG---LGA 72

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV-----RMITN---HIPIFGM 135
           GDVKL+       G     L  L  +AI+GGI+S+FIL       RMI      +P   +
Sbjct: 73  GDVKLVAGIGAVKGVKFVLLDSLV-IAIVGGIISLFILIQEKKLGRMIKKVIYRLPFKSL 131

Query: 136 FVPKSFLMKNKIPYGIAISMG 156
              +     +  PYG+A++ G
Sbjct: 132 SDREDQEGNDAFPYGVAVAFG 152


>gi|162421658|ref|YP_001604874.1| type IV prepilin peptidase family protein [Yersinia pestis Angola]
 gi|165925130|ref|ZP_02220962.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166008875|ref|ZP_02229773.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|167398990|ref|ZP_02304514.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|162354473|gb|ABX88421.1| type IV prepilin peptidase family [Yersinia pestis Angola]
 gi|165923330|gb|EDR40481.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992214|gb|EDR44515.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|167051494|gb|EDR62902.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
           str. UG05-0454]
          Length = 93

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 15/95 (15%)

Query: 62  LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
           +++ ++   I +  F FN+MGGGDVKL+T   +      S L+F+ + A++GG++ V  L
Sbjct: 7   IIIPIVALFIGYIIFHFNVMGGGDVKLITVLLLALTAEQS-LNFIIYTAVMGGVVMVVGL 65

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
            +  +               + K  +PY +AI+ G
Sbjct: 66  LINRVD--------------IQKRGVPYAVAITAG 86


>gi|51245389|ref|YP_065273.1| hypothetical protein DP1537 [Desulfotalea psychrophila LSv54]
 gi|50876426|emb|CAG36266.1| unknown protein [Desulfotalea psychrophila LSv54]
          Length = 191

 Score = 36.2 bits (82), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 22/161 (13%)

Query: 18  CLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALH-LLVGLIVFIICFCF 75
            L  + ++DL +  IPN +++ +ML + L+   L G    L +L  +  G+ + +I    
Sbjct: 20  ALSVSTVTDLRARRIPNFITLSMMLIALLVHGLLSGFAGVLFSLQGIACGMGLLLIPHLL 79

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR---MITNH--- 129
                MG GDVKLL +     G   +F +FL  +AILGG+ S+ +L +R   +IT     
Sbjct: 80  GG---MGAGDVKLLAAVGAALGAAHTFYAFL-VIAILGGLTSIVMLIIRSTCLITLQRMG 135

Query: 130 ---------IPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                    +    + V +S L +  IPYG  I+ GG ++Y
Sbjct: 136 NAFLAAFGGVGAAALRVDRSTLQREGIPYGAVIA-GGTLAY 175


>gi|15669025|ref|NP_247829.1| hypothetical protein MJ_0835.2 [Methanocaldococcus jannaschii DSM
           2661]
 gi|3219922|sp|P81324|Y83C_METJA RecName: Full=Uncharacterized protein MJ0835.2
 gi|2826330|gb|AAB98835.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 339

 Score = 36.2 bits (82), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 32/126 (25%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           + V++I    L+ AA++D+   +IP++ +I M                 I ++L+VG   
Sbjct: 5   NVVYIINFILLLLAAITDIKERIIPHKYTIAM-----------------IIINLVVGYYY 47

Query: 69  F----IICF------CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF-----LFFVAILG 113
           F    II F      C      MGGGDVKL T+ A  F +  SF+ +     L+ +AI  
Sbjct: 48  FGFNAIIAFFSTLILCLILSIGMGGGDVKLFTALAPIFAYPNSFVFYIPKYILYLIAISM 107

Query: 114 GILSVF 119
            I +VF
Sbjct: 108 FIAAVF 113


>gi|323529416|ref|YP_004231568.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001]
 gi|323386418|gb|ADX58508.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001]
          Length = 176

 Score = 36.2 bits (82), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 14/150 (9%)

Query: 19  LVFAALSDLFSAMIPNR-VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC-FF 76
           +V AA +DL    IPN  V   + G+ L+  +L G      A+  L G +V +  F  F+
Sbjct: 19  VVAAASTDLQCRRIPNLLVGAGLFGALLVQCWLKGTGAG--AMAWLTGAVVGLALFLPFY 76

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN-------- 128
               M  GDVKLL     W G    F + L    I G  + V I+    +          
Sbjct: 77  LVRGMAAGDVKLLAMVGAWIGPLLVFYAALATCVIGGAWMLVLIVRRHQLGKVWANLRVI 136

Query: 129 -HIPIFGMFVPKSFLMK-NKIPYGIAISMG 156
            H  + G    +  +     +PYG+AI+ G
Sbjct: 137 AHPALQGSGSARDSIDSVGSVPYGVAIAAG 166


>gi|283779852|ref|YP_003370607.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068]
 gi|283438305|gb|ADB16747.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068]
          Length = 189

 Score = 36.2 bits (82), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 25/158 (15%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYELIALHLLVGLIVFIICFCF 75
           L+ AA+ D F   +PN ++      F+++ ++  +    +E +   L+  ++   +    
Sbjct: 25  LILAAVIDGFELKVPNWITF----PFIISGWIYSVAAFGWEGLGWSLVGTVVGLALLLPA 80

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV-FILTVRMITNHIPIFG 134
           ++   MG GDVKLL     W   T +F +F    A++G + +V  +L  R    H   F 
Sbjct: 81  YSIGGMGAGDVKLLAGVGAWMYGTHTFYAFC-ASAVVGALCAVIMVLAKRAWKKHSDQFW 139

Query: 135 MFVPKSFLMKNK----------------IPYGIAISMG 156
           + + +  ++ N                 +PYGI I++G
Sbjct: 140 LILNEIMVIGNPEKLAVIAAKRKPSMLLLPYGIPIAIG 177


>gi|171317110|ref|ZP_02906313.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5]
 gi|171097744|gb|EDT42571.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5]
          Length = 166

 Score = 36.2 bits (82), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +FSAVFL+        A SD+ S  I N + +  L S   +AF     + +     LVG+
Sbjct: 5   IFSAVFLV---WATLVAASDIRSRRISNGLVLAGLASGFASAFFDAGPFGISLPQALVGM 61

Query: 67  IVFII-CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
           ++ ++  F FF    MG  DVK+      W G   S L      +++ G+ +V ++
Sbjct: 62  LIGLVGLFPFFLLRAMGAADVKVFAVLGAWCG-AHSLLGLWVIASLVAGLHAVVLM 116


>gi|84385707|ref|ZP_00988738.1| putative membrane protein [Vibrio splendidus 12B01]
 gi|84379687|gb|EAP96539.1| putative membrane protein [Vibrio splendidus 12B01]
          Length = 147

 Score = 36.2 bits (82), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 14/93 (15%)

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVFILTVR 124
           LI+F + F  +  NI+GGGDVKL+   A++ G  P + +  L    ILGG+  + +    
Sbjct: 59  LIIFCVFFMLWMMNIIGGGDVKLI--GALFIGIAPEYSIIALATAGILGGVQILLMWVSS 116

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
           +IT+  P             N IPY I + + G
Sbjct: 117 LITHKDP-----------FSNGIPYTIPLGLSG 138


>gi|320170355|gb|EFW47254.1| hypothetical protein CAOG_05198 [Capsaspora owczarzaki ATCC 30864]
          Length = 1753

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 19/111 (17%)

Query: 17   FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
            FCL F          +P+ + +V+L    L +F L +  EL+A    V     I C    
Sbjct: 1555 FCLRF----------VPSTIVVVVLFFLTLNSFCLHLSSELLASGTAV-----ISCNALL 1599

Query: 77   AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
               ++      L T T  W GW+ S  + L+F       +++F+L +  +T
Sbjct: 1600 GPTVVSPSTFSLTTGTKQWNGWSSSLSTGLYFAQ----NVALFLLVLYFVT 1646


>gi|50119732|ref|YP_048899.1| hypothetical protein ECA0787 [Pectobacterium atrosepticum SCRI1043]
 gi|49610258|emb|CAG73701.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 183

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 21/161 (13%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLL---TAFLLGMDYELIALH-----LLVGLIVF 69
           CL++   +DL    I N+  +++L  +L    +  L     + +AL      L     V 
Sbjct: 16  CLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQSGGLDRLALQKTLWALPGAAAVL 75

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI--- 126
           ++ F  F    +G GDVKL++   +W G     + F+   A+ GG+L++ +  +  +   
Sbjct: 76  VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLNTVPTA 134

Query: 127 -------TNHIPIFGMFVPKSFL--MKNKIPYGIAISMGGL 158
                  TN I    + +P +    +   IPYG+AI+ G +
Sbjct: 135 VAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAM 175


>gi|330890705|gb|EGH23366.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 290

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + + +PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESSMPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|319941904|ref|ZP_08016225.1| hypothetical protein HMPREF9464_01444 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804557|gb|EFW01427.1| hypothetical protein HMPREF9464_01444 [Sutterella wadsworthensis
           3_1_45B]
          Length = 151

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 19/132 (14%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF-NIMGG 83
           SDL    IPN  ++++  + ++ A++ G   +   L  +    + ++ F   A+  ++G 
Sbjct: 28  SDLTKREIPNAAAVLLGLTAVVDAWIGGSPLQAGWLGCIS---ILLVGFPVSAYLGLIGA 84

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KLL + A+W   +   L  L   A  GG+L++  L + ++                 
Sbjct: 85  GDIKLLAAAALWT--SARTLDLLLITAWAGGVLALLYLCLNLVRTR-------------R 129

Query: 144 KNKIPYGIAISM 155
             +IPYG+A+S+
Sbjct: 130 TTEIPYGVAVSL 141


>gi|134295592|ref|YP_001119327.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4]
 gi|134138749|gb|ABO54492.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4]
          Length = 166

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC-FFAF 78
          +  A SD+    IPN +    + +   +A      + +  LH L+G++V + C   FF  
Sbjct: 15 ILVAASDIRYRRIPNSLVFGGVAAAFASALCGASPFGIAPLHALLGMLVGMACLLPFFVA 74

Query: 79 NIMGGGDVKLLTSTAVWFG 97
           +MG  DVK+  +   W G
Sbjct: 75 RVMGAADVKVFAALGAWCG 93


>gi|332765440|gb|EGJ95658.1| putative membrane protein [Shigella flexneri 2930-71]
          Length = 110

 Score = 35.8 bits (81), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 15/95 (15%)

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
           V ++ F  F+  I+GGGDVKLLT  +               +AI    L+ F++ +    
Sbjct: 25  VLLVGFFLFSAGIIGGGDVKLLTVLS---------------LAIDEHELANFLVAMTFCG 69

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
             + + G+   +  + +N +PY + IS+  L++YP
Sbjct: 70  ALVVLAGLLFFRKSIRENGVPYAVPISLAFLLTYP 104


>gi|296122070|ref|YP_003629848.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM
          3776]
 gi|296014410|gb|ADG67649.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM
          3776]
          Length = 218

 Score = 35.8 bits (81), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 48/106 (45%), Gaps = 20/106 (18%)

Query: 1  MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
          M    MVF A  L+       AA +DL    I N ++        L AF LG  Y+ +A 
Sbjct: 4  MNPQTMVFLAGVLV---LTTTAAYTDLRYFRIYNWLT--------LPAFALGWIYQ-VAF 51

Query: 61 HLLVGL--------IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW 98
          + L GL        I F + F  FA    GGGD KL+ + +VW GW
Sbjct: 52 YGLPGLADAGLGFAIGFGLFFLLFAIGASGGGDTKLMGALSVWLGW 97


>gi|103488243|ref|YP_617804.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256]
 gi|98978320|gb|ABF54471.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256]
          Length = 163

 Score = 35.8 bits (81), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 13/132 (9%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE----LIALHLLVGLIVFIICFCFFAFNI 80
           SDL    IPN +  +++  F++  +LLG  +         H +  L+V ++    F F  
Sbjct: 22  SDLRYRRIPNLIPALIVLLFIV-GWLLGFPFTGPWWAHGFHFVAALLVGML---LFRFGW 77

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI---PIFGMFV 137
            GGGD KL  + A+WF ++ + L  L FV    G + V +  + ++   I   P      
Sbjct: 78  FGGGDAKLYAACALWFSFSDALL--LMFVTTASGAVIVLVRALAIVARSIFGSPGAPPDG 135

Query: 138 PKSFLMKNKIPY 149
           P+       IPY
Sbjct: 136 PRQKRAPRTIPY 147


>gi|258593733|emb|CBE70074.1| Type 4 prepilin-like proteins leader peptide processing enzyme
           [NC10 bacterium 'Dutch sediment']
          Length = 249

 Score = 35.8 bits (81), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 18/98 (18%)

Query: 65  GLIVFIICFCFFAFNI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           GL+  +  +   AF    MGGGDV LL+    + GW    +SF   V I G  LS+ ++ 
Sbjct: 152 GLVYLVAVYAEVAFQQESMGGGDVNLLSMIGAFLGWRLMLVSFGVAV-IAGACLSLALIA 210

Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
            R+++                K++IP+G  +++G +++
Sbjct: 211 SRVLSR---------------KDRIPFGPFLALGAVVA 233


>gi|46143343|ref|ZP_00135452.2| COG4960: Flp pilus assembly protein, protease CpaA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 131

 Score = 35.8 bits (81), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 22/133 (16%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +DL   +I NRV + +L   +  ++L+   Y    L  L  ++  +I F  F  N++G G
Sbjct: 11  TDLRYRLISNRVIMALLLVIIPFSYLM---YG--TLSWLPAVLWLVIGFVLFLLNVIGAG 65

Query: 85  DVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           DVKLL   AV     P SF  F  F+    G+L             I I G    +  + 
Sbjct: 66  DVKLL---AVLMLAVPSSFAIFFLFLTACTGLL-------------IIIIGWLFYRQTIR 109

Query: 144 KNKIPYGIAISMG 156
           +  +PYGIAIS G
Sbjct: 110 EKGLPYGIAISTG 122


>gi|87312295|ref|ZP_01094393.1| type IV prepilin peptidase CpaA-like protein [Blastopirellula
           marina DSM 3645]
 gi|87284999|gb|EAQ76935.1| type IV prepilin peptidase CpaA-like protein [Blastopirellula
           marina DSM 3645]
          Length = 238

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 33/165 (20%)

Query: 18  CLVFAALSDLFSAMIPNRVS---IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
            L+ AA+ D F   +PN ++   I+   ++ + AF     +E +   +L  ++   +   
Sbjct: 73  TLIVAAVIDGFQLKVPNWITFPFIIAGWTYSVIAF----GWEGLGWSMLGTVVGLALLLP 128

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV---------------- 118
            +A   MG GDVKLL     W   T +F +F    A++G +L++                
Sbjct: 129 AYAIGGMGAGDVKLLAGVGAWMYGTHTFYAFC-ISAVVGAVLAIGMVLFRGAWEKHSNQA 187

Query: 119 -----FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
                 ILT+R       I     P   L+    PYGI I++G +
Sbjct: 188 WMILNEILTIRDPNQLSAIAAERKPTMMLL----PYGIPIAIGSI 228


>gi|187250653|ref|YP_001875135.1| type II secretion system subunit O [Elusimicrobium minutum Pei191]
 gi|186970813|gb|ACC97798.1| Type II secretion system subunit [Elusimicrobium minutum Pei191]
          Length = 260

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 27/165 (16%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM----LGSFLLTAFLLGMDYELIALHL 62
           +++ V L+  + L+ +++ D+   +IP+R SI +    L  F       G   ++    L
Sbjct: 98  IWTGVVLVVVYSLIISSVIDIKIMIIPDRFSIGLIVWGLAFFWCNPNFSGTTLQMFGQSL 157

Query: 63  L---VG----LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
           L   VG    L V ++ +  F    MGGGD+KL+       GW    ++ L    ++G +
Sbjct: 158 LGAAVGFGGLLAVALLGYALFRKEAMGGGDIKLMGGVGALLGWQ-GVITTLVIACLIGLV 216

Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
            S+F++               V K     + IP+G  +S G L++
Sbjct: 217 YSIFLM---------------VTKRADKGSAIPFGPFLSFGALVN 246


>gi|84387248|ref|ZP_00990269.1| hypothetical protein V12B01_22501 [Vibrio splendidus 12B01]
 gi|84377895|gb|EAP94757.1| hypothetical protein V12B01_22501 [Vibrio splendidus 12B01]
          Length = 179

 Score = 35.4 bits (80), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L+  ++ D+    IPN++ I+ L  + L+ F     +++  +  +  ++ F      +  
Sbjct: 15  LIAVSVYDVEKHRIPNKILILFLFVYFLSMFNRNYSFDVFLMSFVGFVVFFCFGLLLYFL 74

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI-TNHIPIFGMFV 137
             M  GDVKLL    ++ GW    L   +F+ +  G++  F L      +N++ I G F 
Sbjct: 75  RAMSAGDVKLLGIVGMYLGWG-QLLGASYFILLSAGVIGTFYLLYNFSNSNNLSIRGYFE 133

Query: 138 PK 139
            K
Sbjct: 134 NK 135


>gi|328952533|ref|YP_004369867.1| Prepilin peptidase [Desulfobacca acetoxidans DSM 11109]
 gi|328452857|gb|AEB08686.1| Prepilin peptidase [Desulfobacca acetoxidans DSM 11109]
          Length = 260

 Score = 35.4 bits (80), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 24/153 (15%)

Query: 16  PFCLVFAALS--DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           PF L    LS  DL   ++P+ +++  +G  LL++ +     EL     LVG +     F
Sbjct: 103 PFALALLTLSVIDLEQGLLPDVITLPGIGFGLLSSLVF---QELSFFSALVGALTGAAVF 159

Query: 74  CFFAF--------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
              A+          MGGGDVKLL     + G     L ++ F++   G L+  IL +R 
Sbjct: 160 QGIAWIYAKWAGKQGMGGGDVKLLAMIGAFLG--IQSLPWVIFLSASLGTLTGIILVLRK 217

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
             +         PK  L    IP+G  +++GGL
Sbjct: 218 GRH---------PKETLRSLPIPFGPFLAIGGL 241


>gi|323694366|ref|ZP_08108539.1| hypothetical protein HMPREF9475_03403 [Clostridium symbiosum
           WAL-14673]
 gi|323501606|gb|EGB17495.1| hypothetical protein HMPREF9475_03403 [Clostridium symbiosum
           WAL-14673]
          Length = 180

 Score = 35.4 bits (80), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 10/137 (7%)

Query: 22  AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--------YELIALHLLVGLIVFIICF 73
           +AL D     +PN + +    +F +  F+ G          + +IAL  +      II F
Sbjct: 13  SALCDFRKGRVPNVLILFGTAAFGIAGFIRGPSPGDGSGAVFTVIALFFIRTFFTVIIFF 72

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF-ILTVRMITNHIPI 132
             F F +MG GD+K++   A + G     +  +F+      + S+F +L   ++   I  
Sbjct: 73  PLFLFRMMGAGDIKVMAVIAGYMGMDRG-VEIIFYGLAAAAVWSLFYMLKQHILAERIKY 131

Query: 133 FGMFVPKSFLMKNKIPY 149
           F  ++   F  +  +PY
Sbjct: 132 FLNYIKHLFQSEQILPY 148


>gi|330966321|gb|EGH66581.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 290

 Score = 35.4 bits (80), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLMGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|323486493|ref|ZP_08091816.1| hypothetical protein HMPREF9474_03567 [Clostridium symbiosum
           WAL-14163]
 gi|323400196|gb|EGA92571.1| hypothetical protein HMPREF9474_03567 [Clostridium symbiosum
           WAL-14163]
          Length = 180

 Score = 35.4 bits (80), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 10/137 (7%)

Query: 22  AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--------YELIALHLLVGLIVFIICF 73
           +AL D     +PN + +    +F +  F+ G          + +IAL  +      II F
Sbjct: 13  SALCDFRKGRVPNVLILFGTAAFGIAGFIRGPSPGDGSGAVFTVIALFFIRTFFTVIIFF 72

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF-ILTVRMITNHIPI 132
             F F +MG GD+K++   A + G     +  +F+      + S+F +L   ++   I  
Sbjct: 73  PLFLFRMMGAGDIKVMAVIAGYMGMDRG-VEIIFYGLAAAAVWSLFYMLKQHILAERIKY 131

Query: 133 FGMFVPKSFLMKNKIPY 149
           F  ++   F  +  +PY
Sbjct: 132 FLNYIKHLFQSEQILPY 148


>gi|225872752|ref|YP_002754209.1| type IV prepilin leader peptidase family protein [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791712|gb|ACO31802.1| type IV prepilin leader peptidase family protein [Acidobacterium
           capsulatum ATCC 51196]
          Length = 191

 Score = 35.4 bits (80), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 16/101 (15%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-----------MITNH 129
           MG GDVKL+T+ A   G     +  L   AI GG++++ +   R           M+ +H
Sbjct: 90  MGAGDVKLMTAVACVAG-NHFVIELLVTTAIAGGVMALGLALARGRFKQTLGNVAMLMSH 148

Query: 130 IPIFGMFVPKSFLMKN----KIPYGIAISMGGLISYPDSYL 166
               G+       ++N    ++PYG+AI+ G + +   +Y+
Sbjct: 149 HRHAGLQPHPELNVRNQQSLRLPYGLAIAAGCIFTLASTYV 189


>gi|328952517|ref|YP_004369851.1| peptidase A24A prepilin type IV [Desulfobacca acetoxidans DSM
           11109]
 gi|328452841|gb|AEB08670.1| peptidase A24A prepilin type IV [Desulfobacca acetoxidans DSM
           11109]
          Length = 168

 Score = 35.4 bits (80), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           MGGGDVKLL +   W G    F  FL + A+ GGI S+ +L ++
Sbjct: 74  MGGGDVKLLAALGAWVGPGRVFNIFL-YAALAGGIASIIMLALQ 116


>gi|307263191|ref|ZP_07544812.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|306871553|gb|EFN03276.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 131

 Score = 35.4 bits (80), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 20/132 (15%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +DL   +I NRV + +L   +  ++L+   Y    L  L  ++  +I F  F  N +G G
Sbjct: 11  TDLRYRLISNRVIMALLLVIIPFSYLM---YG--TLSWLPAVLCLVIGFVLFLLNAIGAG 65

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVKLLT   +    +P  + FLF  A  G +L               I G    +  + +
Sbjct: 66  DVKLLTVLMLAIP-SPLAIFFLFLTACSGLLLI--------------IIGWLFYRKTIRE 110

Query: 145 NKIPYGIAISMG 156
             +PYGIAIS G
Sbjct: 111 KGLPYGIAISTG 122


>gi|66044051|ref|YP_233892.1| prepilin peptidase [Pseudomonas syringae pv. syringae B728a]
 gi|63254758|gb|AAY35854.1| Prepilin peptidase [Pseudomonas syringae pv. syringae B728a]
          Length = 290

 Score = 35.4 bits (80), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQVLPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|300697745|ref|YP_003748406.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia
           solanacearum CFBP2957]
 gi|299074469|emb|CBJ54019.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia
           solanacearum CFBP2957]
          Length = 183

 Score = 35.4 bits (80), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 19/152 (12%)

Query: 25  SDLFSAMIPNR-VSIVMLGSFLLTAF----LLGMDYELIALHLLVGLIVFIICFCFFAFN 79
           SDL S  +PN  V++ ++ S +L  F     L  D+  + L   + L  F+     +A  
Sbjct: 23  SDLRSRRVPNWLVAVGLVLSIVLVKFGTVMALAYDWRDVWLGGAIALASFL---PLYALG 79

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV-- 137
            MG GDVK  T   +  GW    ++     ++L G+ ++ IL +R +    P   M +  
Sbjct: 80  WMGAGDVKFFTVAGLLAGWH-GLVAIWLVSSVLAGVHALAILLLRRVDASAPSAWMLMRV 138

Query: 138 -------PKSFLMKNKIPYGIAISMGGLISYP 162
                        +  IPY   +++ GL+S P
Sbjct: 139 CPALARWDPGHAGRRGIPYAAYMAI-GLLSLP 169


>gi|257484000|ref|ZP_05638041.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331013019|gb|EGH93075.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 290

 Score = 35.4 bits (80), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|85705160|ref|ZP_01036260.1| membrane protein, putative [Roseovarius sp. 217]
 gi|85670482|gb|EAQ25343.1| membrane protein, putative [Roseovarius sp. 217]
          Length = 166

 Score = 35.4 bits (80), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 19/159 (11%)

Query: 9   SAVFLIP---PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLL 63
           +A++ +P   P C V+ A SDL    IPN   + ++G FL+     L   DY     HL 
Sbjct: 9   AALWFLPFVLPVC-VWVAWSDLSRMKIPNTAVLTLVGIFLVVGLIALPISDYPWRLAHLA 67

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTA--VWFGWTPSFLSFLFFVAILGGILSVFIL 121
           V L+  I      A  +MG GD K + + A  V  G   + L  +F   +LG  ++  ++
Sbjct: 68  VMLVAGI---AMNAAGLMGAGDAKFIAAAAPFVALG-DAATLCLIFAATLLGAFVTHRVI 123

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
               +    P +     +S+    K P G A  +GG ++
Sbjct: 124 KYSPLRRLAPDW-----QSWNTGKKFPMGFA--LGGTLA 155


>gi|323495635|ref|ZP_08100706.1| type IV leader peptidase [Vibrio sinaloensis DSM 21326]
 gi|323319270|gb|EGA72210.1| type IV leader peptidase [Vibrio sinaloensis DSM 21326]
          Length = 134

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 17/133 (12%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +DL   ++ N+  +++ G    + FL         +HL+   +V I   C +   + G G
Sbjct: 11  NDLQHRVVKNKSVLLLAGILAFSIFLFDSK-----IHLIQASLVLISGMCLWKVGVFGAG 65

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           D+KL +  A++     S L  LF + ++GG+ ++  L +R    H+           +  
Sbjct: 66  DIKLASVFAIFIAPDYSLL-VLFLMLVIGGVEALLYLLIRTTYPHL-----------IRH 113

Query: 145 NKIPYGIAISMGG 157
             IP+ I I + G
Sbjct: 114 GGIPFAIPIVISG 126


>gi|221213142|ref|ZP_03586118.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD1]
 gi|221167355|gb|EED99825.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD1]
          Length = 166

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC-FFAFNIMGG 83
           SD+    +PN + +  L    L+AFL    + +  L   +G+++ +I F  FF   +MG 
Sbjct: 20  SDVRVRRVPNSLVLGGLALAFLSAFLNANPFGISPLSATIGMLIGLIAFVPFFLLRVMGA 79

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
            D+K+      W G     L +L+ VA L   +   +L   M+ +  PI  ++
Sbjct: 80  ADLKVFAVLGAWCG--AHALLWLWIVASLAAGIHALVL---MLVSRTPIRALW 127


>gi|254488438|ref|ZP_05101643.1| peptidase A24A, prepilin type IV [Roseobacter sp. GAI101]
 gi|214045307|gb|EEB85945.1| peptidase A24A, prepilin type IV [Roseobacter sp. GAI101]
          Length = 164

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 4  SKMVFSAVFLIP---PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
          S  V++A++ +P   P CL + A +D+ S  I N   I +   F++   ++ + +E    
Sbjct: 2  SITVYAALWFLPFVLPLCL-YTAYTDIASMRITNPTVITLAAVFVIIGPVV-LPFETYLW 59

Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTS 91
          HLL  +I  ++     A  +MG GD K + +
Sbjct: 60 HLLAMVIALVVGIILNAGGVMGAGDAKFIAA 90


>gi|330987705|gb|EGH85808.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 290

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|283787706|ref|YP_003367571.1| prepilin peptidase TadV [Citrobacter rodentium ICC168]
 gi|282951160|emb|CBG90851.1| putative prepilin peptidase TadV [Citrobacter rodentium ICC168]
          Length = 132

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 20/132 (15%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +DLF   I N+  +++L   L++  +    Y + ++  +   ++ ++ F   +F+++G G
Sbjct: 8   TDLFYRKIKNKTVVLILIVSLVSGII---QYGIPSI--IFPCVILLVGFLLSSFSLVGAG 62

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVKLL + +     +   L F+   A L G+L V           IP+  + + K    K
Sbjct: 63  DVKLLVALSFSLS-SEDILRFITTTA-LCGLLVV-----------IPVIYICIVKR--KK 107

Query: 145 NKIPYGIAISMG 156
             +PYGIAISMG
Sbjct: 108 TTVPYGIAISMG 119


>gi|71735543|ref|YP_273100.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556096|gb|AAZ35307.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 290

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|330977426|gb|EGH77373.1| prepilin peptidase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 290

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|330900442|gb|EGH31861.1| prepilin peptidase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 290

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|320326052|gb|EFW82109.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330217|gb|EFW86202.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330880436|gb|EGH14585.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 290

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|289674984|ref|ZP_06495874.1| prepilin peptidase [Pseudomonas syringae pv. syringae FF5]
          Length = 290

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|237802034|ref|ZP_04590495.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024890|gb|EGI04946.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 290

 Score = 35.0 bits (79), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|302189196|ref|ZP_07265869.1| prepilin peptidase [Pseudomonas syringae pv. syringae 642]
          Length = 290

 Score = 35.0 bits (79), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|298485507|ref|ZP_07003590.1| Leader peptidase (Prepilin peptidase) [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159971|gb|EFI01009.1| Leader peptidase (Prepilin peptidase) [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 290

 Score = 35.0 bits (79), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|23098072|ref|NP_691538.1| leader peptide processing enzyme [Oceanobacillus iheyensis HTE831]
 gi|22776297|dbj|BAC12573.1| leader peptide processing enzyme (late competence protein)
           [Oceanobacillus iheyensis HTE831]
          Length = 251

 Score = 35.0 bits (79), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 16/139 (11%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
            +SD    +IPN++ +  L  F++   LL +D               I      +   MG
Sbjct: 114 CISDFIYMVIPNKLLLFFLPIFIILRLLLPLDPWWSMFTGAAIGFGIIFLIILISRGGMG 173

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
            GD+KLL    +  G     L+F F   I+G ++S+ +L+V +I  + P           
Sbjct: 174 AGDMKLLGLAGIVLGVEKIILAF-FLACIIGSVISIVLLSVHLIQRNKP----------- 221

Query: 143 MKNKIPYGIAISMGGLISY 161
                P+G  I++G LISY
Sbjct: 222 ----FPFGPFIAIGILISY 236


>gi|330960770|gb|EGH61030.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 290

 Score = 35.0 bits (79), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ +R + +  PI FG ++  
Sbjct: 209 MGHGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRIRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|289650991|ref|ZP_06482334.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 290

 Score = 35.0 bits (79), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|170701160|ref|ZP_02892133.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10]
 gi|170133941|gb|EDT02296.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10]
          Length = 180

 Score = 35.0 bits (79), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 22/163 (13%)

Query: 16  PFCL----VFAALSDLFSAMIPNR-VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           P C+    + AA +D+ S  IPNR V++ ++G+ +    L G+    +A         F 
Sbjct: 12  PLCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCALHGIQAGALAWLAGA-ATGFG 70

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFILTVRMITN 128
           +   F+    M  GDVKL+ +   W G   +F   L  F V  +G I    +L  RM   
Sbjct: 71  LLLPFYLLRGMAAGDVKLMLAIGAWVGAQMTFYIVLATFLVGGIGAI-GFALLRGRMRQM 129

Query: 129 HIPIFGMFV-------------PKSFLMKNKIPYGIAISMGGL 158
              ++ +               P        +PYG+AI+ G L
Sbjct: 130 CANVWALIAHRSTGAYAGATDGPVEVASVGALPYGVAIAAGTL 172


>gi|256832572|ref|YP_003161299.1| peptidase A24A domain-containing protein [Jonesia denitrificans DSM
           20603]
 gi|256686103|gb|ACV08996.1| peptidase A24A domain protein [Jonesia denitrificans DSM 20603]
          Length = 274

 Score = 35.0 bits (79), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 14/114 (12%)

Query: 26  DLFSAMIPNRVSI----VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81
           DL +  +PN++ +    V+         L+G ++  +    L GLI++I+ F       M
Sbjct: 131 DLDTHKLPNKIVLPAYPVVAVLVCFATLLMGWEWTSVIRAALGGLILYILYFVLCVIGGM 190

Query: 82  GGGDVK---LLTSTAVWFGWTPSFL---SFLFFVAILGGILSVFILTVRMITNH 129
           G GDVK   LL  +  W GW  S+L    FL FV  LGG+ ++ +L +R +   
Sbjct: 191 GFGDVKLAGLLGISLGWLGW--SYLIVGGFLPFV--LGGLYAIVLLVLRRVGRK 240


>gi|190149867|ref|YP_001968392.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|189914998|gb|ACE61250.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
          Length = 142

 Score = 35.0 bits (79), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 20/132 (15%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +DL   +I NRV + +L   +  ++L+   Y    L  L  ++  +I F  F  N +G G
Sbjct: 22  TDLRYRLISNRVIMALLLVIIPFSYLM---YG--TLSWLPAVLCLVIGFVLFLLNAIGAG 76

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVKLLT   +    +P  + FLF  A  G +L               I G    +  + +
Sbjct: 77  DVKLLTVLMLAIP-SPLAIFFLFLTACSGLLLI--------------IIGWLFYRKTIRE 121

Query: 145 NKIPYGIAISMG 156
             +PYGIAIS G
Sbjct: 122 KGLPYGIAISTG 133


>gi|149188848|ref|ZP_01867138.1| Hypothetical membrane protein [Vibrio shilonii AK1]
 gi|148837268|gb|EDL54215.1| Hypothetical membrane protein [Vibrio shilonii AK1]
          Length = 113

 Score = 35.0 bits (79), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 14/83 (16%)

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSF--LFFVAILGGILSVFILTVRMITNHIPIF 133
           F F  MGGGDVKL+   A+     PS ++   L+   I GG+L+V  L+          F
Sbjct: 33  FYFGWMGGGDVKLIAILALAL---PSVITVVALWLTMIFGGVLAVARLSQYR-------F 82

Query: 134 GMFVPKSFLMKNKIPYGIAISMG 156
            +   K    +  +PYG+AISMG
Sbjct: 83  SLISAKK--DQRGLPYGVAISMG 103


>gi|330973677|gb|EGH73743.1| prepilin peptidase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 290

 Score = 35.0 bits (79), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|218133640|ref|ZP_03462444.1| hypothetical protein BACPEC_01509 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991015|gb|EEC57021.1| hypothetical protein BACPEC_01509 [Bacteroides pectinophilus ATCC
           43243]
          Length = 256

 Score = 35.0 bits (79), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI---TNHIPIFGM 135
           +  GGGD+KL+ +  ++ GW    L+FL      G IL   I +VRM     NH+  FG 
Sbjct: 177 DCFGGGDIKLMAAAGLFLGWKCIILAFL-----AGCILGAVIHSVRMRMSGDNHMLAFGP 231

Query: 136 FVPKSFLM 143
           ++    ++
Sbjct: 232 YLAAGIMI 239


>gi|330872528|gb|EGH06677.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 290

 Score = 35.0 bits (79), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|213970188|ref|ZP_03398319.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tomato T1]
 gi|301385924|ref|ZP_07234342.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063131|ref|ZP_07254672.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tomato K40]
 gi|302134157|ref|ZP_07260147.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213925069|gb|EEB58633.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tomato T1]
          Length = 290

 Score = 35.0 bits (79), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|289626921|ref|ZP_06459875.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330867359|gb|EGH02068.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 290

 Score = 35.0 bits (79), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AITGWIALLWGGQIT--DSYM 284


>gi|28868144|ref|NP_790763.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851381|gb|AAO54458.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331018825|gb|EGH98881.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 290

 Score = 35.0 bits (79), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139
           MG GD KLL     W GW    L+ L   +++G +L V ++ VR + +  PI FG ++  
Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166
                  I   IA+  GG I+  DSY+
Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284


>gi|323493937|ref|ZP_08099054.1| hypothetical protein VIBR0546_01886 [Vibrio brasiliensis LMG 20546]
 gi|323311878|gb|EGA65025.1| hypothetical protein VIBR0546_01886 [Vibrio brasiliensis LMG 20546]
          Length = 152

 Score = 35.0 bits (79), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 18/159 (11%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M    ++   + +I   C   + +SD     I NR+  +++ +  + AF  G   + + +
Sbjct: 1   MNLDNIIAVTIVIINIACAFHSCISDHQHRTISNRICKLLIITNTIAAFYYGYGIQSVTI 60

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVF 119
             ++  I+ I     +     G GD+KLL + +V  G  P   L+ L  V ++GG+  V 
Sbjct: 61  TSVIFFILII----IWLIGAFGAGDIKLLCAFSV--GIKPELTLACLVLVGLIGGLQLVV 114

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
           +  + ++T           K+ + +  IPYGI IS+ G+
Sbjct: 115 MFLIGLMT-----------KTNIFEKGIPYGIPISISGV 142


>gi|288869776|ref|ZP_06409495.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
 gi|288860463|gb|EFC92761.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
          Length = 223

 Score = 35.0 bits (79), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 67  IVFIICFCFFAFNIMGGGDVKLLT--STAVWFGWTPSFLS 104
           + +II F F+   I GGGDVKLLT  +T + FG   +FL+
Sbjct: 3   VTYIITFLFWKLKIWGGGDVKLLTAIATVIPFGINLNFLN 42


>gi|83338398|gb|ABC11883.1| PilD [Aliivibrio fischeri]
          Length = 295

 Score = 35.0 bits (79), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 13/118 (11%)

Query: 17  FCLVFAALS--DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG-----LIVF 69
           F LV  AL+  D+ + ++P+++++ +L S L  A +      L+    +VG     LI++
Sbjct: 140 FTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWNSVSLV--DSVVGAMAGYLILW 197

Query: 70  IICFCF---FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            I +CF        MG GD KLL +   W GW    L  +   +++G I+ V +LT +
Sbjct: 198 SIYWCFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-IILLSSVVGAIIGVIMLTAQ 254


>gi|257784114|ref|YP_003179331.1| peptidase A24A prepilin type IV [Atopobium parvulum DSM 20469]
 gi|257472621|gb|ACV50740.1| peptidase A24A prepilin type IV [Atopobium parvulum DSM 20469]
          Length = 162

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 12/105 (11%)

Query: 22  AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA---- 77
           A++SD+    IPNR+ I+++  + +   +     E+I   L   L  F+IC         
Sbjct: 13  ASISDMRDRTIPNRIPIMLVFLWPIWLAVNKNRAEMIMSSLWSEL--FVICVLILVSIVT 70

Query: 78  -----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
                 + +GGGD+KL+ ST ++     +F+ FLF   ILG + S
Sbjct: 71  KFIGHMSSIGGGDIKLILSTCLYLEIKETFV-FLFLANILGVMFS 114


>gi|170022936|ref|YP_001719441.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis YPIII]
 gi|169749470|gb|ACA66988.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis YPIII]
          Length = 140

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 26/141 (18%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH---LLVGLIVFIICFCF 75
           L+F   SD+   +I N+  I    S    A +L     L+  H   +++ ++   I +  
Sbjct: 16  LLFVCYSDIRHRIISNKFVI----SIACNAIIL----SLVTHHTVSIIIPIVALFIGYII 67

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           F FN+MGGGDVKL+T+  +      S L+F+ + A++GG++ V  L +  +         
Sbjct: 68  FHFNVMGGGDVKLITALLLALTAEQS-LNFIIYTAVMGGVVMVVGLLINRVD-------- 118

Query: 136 FVPKSFLMKNKIPYGIAISMG 156
                 + K  +PY +AI+ G
Sbjct: 119 ------IQKRGVPYAVAITAG 133


>gi|319789518|ref|YP_004151151.1| Prepilin peptidase [Thermovibrio ammonificans HB-1]
 gi|317114020|gb|ADU96510.1| Prepilin peptidase [Thermovibrio ammonificans HB-1]
          Length = 255

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 65  GLIVFIIC--FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           G+I+FII   + F     MG GD  ++     + GW    L+ LFF ++ G +L V ++ 
Sbjct: 157 GVILFIIETYYVFTGKEGMGYGDANIMAVIGAFLGWKKVLLT-LFFASLTGAVLGVTLMA 215

Query: 123 VRMITNHIPI-FGMF 136
           +R  +   P+ FG F
Sbjct: 216 LRKSSKEQPLPFGPF 230


>gi|290559758|gb|EFD93082.1| peptidase A24A prepilin type IV [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 276

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 17/147 (11%)

Query: 6   MVFSAVFLIPPFC---LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
           MV+S  +LI  F    L+ A+++D+    +P+ +S V++    L      +    I+  +
Sbjct: 1   MVYSINYLIFIFVIGVLILASITDIKKREVPDSISYVLIAGSSLLVLAYSISNNTISNLV 60

Query: 63  LVGL-IVFIICFCFFAFNI--MGGGDVKLLTSTAVWF---------GWTPSFLSFLFFVA 110
            + L I+ +  F +F +     GGGDVK+L   ++ F          +   F++ L F  
Sbjct: 61  YMPLSILLVTGFSYFMYKAGQWGGGDVKILFGISIVFTSINLFSNRSFIALFINILLFGG 120

Query: 111 ILG--GILSVFILTVRMITNHIPIFGM 135
           I G  G ++V ++ ++ + NH  ++ +
Sbjct: 121 IYGILGTIAVGVIKIKKLKNHFKVYDI 147


>gi|326795296|ref|YP_004313116.1| prepilin peptidase [Marinomonas mediterranea MMB-1]
 gi|326546060|gb|ADZ91280.1| Prepilin peptidase [Marinomonas mediterranea MMB-1]
          Length = 256

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           +  S + F+++FLI    L  AA+ D+ +  IP+  S++++ S  +   L         L
Sbjct: 107 LTSSPLQFASLFLIF-LSLFIAAVIDIENKWIPDECSLMIIASSFVALLLNAQPLADNVL 165

Query: 61  HLLVG--LIVFIICF--CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
            L+ G  L+ F+  F   F     +G GD KLL +   W G++ +    + F A LG I 
Sbjct: 166 GLICGYALVYFLRLFYLHFRQIEAIGLGDAKLLAAIGAWLGFS-NLPYVIMFAASLGMIG 224

Query: 117 SVFILTVRMITNHIPIFGMFV 137
           ++ I   R  +  IP FG F+
Sbjct: 225 ALIIRATR--STRIP-FGPFL 242


>gi|288560490|ref|YP_003423976.1| type IV leader peptidase family protein [Methanobrevibacter
           ruminantium M1]
 gi|288543200|gb|ADC47084.1| type IV leader peptidase family protein [Methanobrevibacter
           ruminantium M1]
          Length = 302

 Score = 34.7 bits (78), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVML--GSFLLTAFLLGMDYELIALHLLVGLIV-FIICF 73
           F L+ A   DL   +IPN++S+ ++  G  +    L+ ++  L A+  +  LI+ FII F
Sbjct: 27  FTLLLANYYDLKYGIIPNKLSVFLMTFGILINVLILIVLNNRLYAIFYVSYLIIIFIISF 86

Query: 74  CFFAFNIMGGGDVKLLTS 91
             +  +  GGGD+KL  S
Sbjct: 87  VLWKISFWGGGDLKLFCS 104


>gi|317154607|ref|YP_004122655.1| peptidase A24A prepilin type IV [Desulfovibrio aespoeensis Aspo-2]
 gi|316944858|gb|ADU63909.1| peptidase A24A prepilin type IV [Desulfovibrio aespoeensis Aspo-2]
          Length = 181

 Score = 34.7 bits (78), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
           F   +MG GDVKL+     W G   +F +FL F  + GG  +V +L
Sbjct: 69  FFLGLMGAGDVKLMAGVGAWLGAQAAFTAFL-FTCLAGGFYAVVVL 113


>gi|134299957|ref|YP_001113453.1| peptidase A24A, prepilin type IV [Desulfotomaculum reducens MI-1]
 gi|134052657|gb|ABO50628.1| peptidase A24A, prepilin type IV [Desulfotomaculum reducens MI-1]
          Length = 167

 Score = 34.7 bits (78), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 16/95 (16%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFF-VAILGGILSVFILTV--RMITNHIPIFGMFV 137
           MG GDVKLL     W G  P F+   F   AI+GGI++   L+   R++ +   I   F+
Sbjct: 72  MGAGDVKLLAVIGAWQG--PQFVWLCFLCTAIVGGIIAAVQLSKSGRLLQSLKYILFTFL 129

Query: 138 P-----------KSFLMKNKIPYGIAISMGGLISY 161
           P            +       PYG+AI+ G   +Y
Sbjct: 130 PGAPKAHAFGTLTTAKAGEAFPYGVAIASGTFATY 164


>gi|282899579|ref|ZP_06307543.1| pilD (Peptidase A24A, prepilin type IV) [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195458|gb|EFA70391.1| pilD (Peptidase A24A, prepilin type IV) [Cylindrospermopsis
           raciborskii CS-505]
          Length = 271

 Score = 34.7 bits (78), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 16/88 (18%)

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
           F F+   +MGGGD KL      W GW   +L    F+A   G+L                
Sbjct: 181 FLFYGKPVMGGGDGKLAAMMGAWLGW--QYLLVASFIACFSGVLVG-------------- 224

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
           FG  +     M+ K+P+G  ++ G +IS
Sbjct: 225 FGAIIVCDGQMEQKMPFGPFLAWGSVIS 252


>gi|152992433|ref|YP_001358154.1| C4-dicarboxylate transporter permease [Sulfurovum sp. NBC37-1]
 gi|151424294|dbj|BAF71797.1| C4-dicarboxylate transporter, permease [Sulfurovum sp. NBC37-1]
          Length = 623

 Score = 34.7 bits (78), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 12/97 (12%)

Query: 2   KESKMVFSAVFLIPPFCLVFAALSDLFSAMIP--NRVSIVMLGSFLLTAFLLGMDYELI- 58
           K +K  F A+  +PP  L+ A L  +F+ +       +I +LG+F L A+   +D+EL+ 
Sbjct: 407 KVAKAAFKAI--LPPLLLIAAVLGSIFAGIASPTESAAIGVLGAFALAAYNRVLDFELVR 464

Query: 59  -----ALHLLVGLIVFIICFCFFA--FNIMGGGDVKL 88
                 + L   + + +I    F+  FN +GGGD+ L
Sbjct: 465 YAAVETVKLTAMIFMILIGATAFSLVFNELGGGDMAL 501


>gi|170724968|ref|YP_001758994.1| peptidase A24A prepilin type IV [Shewanella woodyi ATCC 51908]
 gi|169810315|gb|ACA84899.1| peptidase A24A prepilin type IV [Shewanella woodyi ATCC 51908]
          Length = 164

 Score = 34.7 bits (78), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 12/124 (9%)

Query: 34  NRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTA 93
            R+S +   + L+    L    +L+    L G ++F +    F F  +  GD KL ++ A
Sbjct: 22  RRISNIGCFATLIICVWLAASQQLLIEGFLTGSLIFALSLVLFRFRWLAAGDGKLASALA 81

Query: 94  VWFGWTPSFLSFLFFVAILGGILSV-FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIA 152
           V    +   ++ L    I GG+L+V +++  R+I          +P+   +   +PYGIA
Sbjct: 82  VALPLSQLPVA-LMLTLICGGVLAVIYLIKYRVIQK--------IPRGEDL--GLPYGIA 130

Query: 153 ISMG 156
           IS+G
Sbjct: 131 ISLG 134


>gi|158320666|ref|YP_001513173.1| peptidase A24A domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158140865|gb|ABW19177.1| peptidase A24A domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 252

 Score = 34.7 bits (78), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 22/143 (15%)

Query: 17  FCLVFA-----ALSDLFSAMIPNRVSIVMLGSFLLT------AFLLGMD----YELIALH 61
           +C++F+     AL DL   +IP+   +++L  F+L+      A++L M+     + I   
Sbjct: 99  YCILFSILMVVALIDLKHMIIPD---VLILCIFILSILYKIAAYVLWMEPFNIVQSIGGL 155

Query: 62  LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
           +L GL  F +   F +   MG GDV L++S     G    FL+ +F   ++G I+SVF+L
Sbjct: 156 ILSGL--FFVLIIFLSKGGMGEGDVTLISSLGFILGIKDIFLT-IFLSFVVGAIISVFLL 212

Query: 122 TVRMITNHIPI-FGMFVPKSFLM 143
             ++     PI FG F+  SF M
Sbjct: 213 ITKIKGRKDPIPFGPFIIFSFFM 235


>gi|302875179|ref|YP_003843812.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B]
 gi|307688856|ref|ZP_07631302.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B]
 gi|302578036|gb|ADL52048.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B]
          Length = 159

 Score = 34.7 bits (78), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L++ +LSD+   +IP++V I++L   L++   + +   L+ L L+   I FII     + 
Sbjct: 33  LLYVSLSDIKIRIIPDKVHIMIL---LVSLININLKDSLLGLFLVS--IPFIIT-ALISE 86

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLS 104
           N +GGGD+KL+ ++    G    FL+
Sbjct: 87  NGIGGGDIKLMGASGFLLGVKGGFLA 112


>gi|307245414|ref|ZP_07527502.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307254369|ref|ZP_07536207.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306853755|gb|EFM85972.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306862668|gb|EFM94624.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
          Length = 142

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 17/93 (18%)

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS-FLSFLFFVAILGGILSVFILTV 123
            ++  +I F  F  N++G GDVKLL   AV     PS F  F  F+    G+L +     
Sbjct: 57  AILCLVIGFVLFLLNVIGAGDVKLL---AVLMLAVPSPFAVFFLFLTACAGLLLI----- 108

Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
                   I G    +  + +  +PYGIAIS G
Sbjct: 109 --------IIGWLFYRKAIREKGLPYGIAISAG 133


>gi|90411209|ref|ZP_01219222.1| hypothetical protein P3TCK_06572 [Photobacterium profundum 3TCK]
 gi|90328055|gb|EAS44376.1| hypothetical protein P3TCK_06572 [Photobacterium profundum 3TCK]
          Length = 168

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 33/171 (19%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIALHLL---VGLIVF 69
           ++++AL DL    IPN  ++V+L  F LT       F+  +D+  +   L+   VGL+V 
Sbjct: 9   VIYSALYDLRENKIPNS-AVVILALFGLTQAIISSLFIGSLDFHHLTDALIGFIVGLLVS 67

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           II        + G GD KLL +  +  G+ P+ L  +    I  G+LS+ +    MI  H
Sbjct: 68  II---LHYLGLFGAGDAKLLAALGIVVGF-PNILLLISMSVIFSGVLSLLL----MICKH 119

Query: 130 --IPIFGMFV----------PKS-FLMKNKIPYGIAISMGGLISYPDSYLF 167
             IP F  +           P+S  +  N +P G AI +  L  Y + Y+F
Sbjct: 120 EFIPNFRRWANIIFYQFYQSPQSDSIAVNAVPMGGAILLATL--YCEFYMF 168


>gi|283850944|ref|ZP_06368229.1| peptidase A24A prepilin type IV [Desulfovibrio sp. FW1012B]
 gi|283573590|gb|EFC21565.1| peptidase A24A prepilin type IV [Desulfovibrio sp. FW1012B]
          Length = 165

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 16/97 (16%)

Query: 26  DLFSAMIPNRVS-------IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           D+ S  IPNR++       + + G+F   + L G+     AL LL G +VF+I   F   
Sbjct: 25  DMRSRRIPNRITFPAMLVLVALHGAF---SGLPGLGEA--ALGLLGGFLVFLIPHLF--- 76

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
            ++G GDVKL+       G + + L+ + F ++ GG+
Sbjct: 77  GLLGAGDVKLMAVVGAGLG-SQALLTAVLFTSVAGGL 112


>gi|163788857|ref|ZP_02183302.1| hypothetical protein FBALC1_11487 [Flavobacteriales bacterium
           ALC-1]
 gi|159876094|gb|EDP70153.1| hypothetical protein FBALC1_11487 [Flavobacteriales bacterium
           ALC-1]
          Length = 623

 Score = 34.3 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 13/90 (14%)

Query: 44  FLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWF---GW-- 98
           F    F+LG+   LI  +LLV  +VF +   FF  ++   G   L+    VW    GW  
Sbjct: 75  FFKRTFILGILKFLIEAYLLVS-VVFYLGLAFFNVDVNYTGFKALIVKALVWLQDSGWIV 133

Query: 99  -TPS-FLSFLFFVAILGGILSVFILTVRMI 126
             PS F   +FF+ IL     +F  +VR I
Sbjct: 134 KVPSLFYKLVFFILIL-----IFFKSVRNI 158


>gi|218441560|ref|YP_002379889.1| peptidase A24A domain protein [Cyanothece sp. PCC 7424]
 gi|218174288|gb|ACK73021.1| peptidase A24A domain protein [Cyanothece sp. PCC 7424]
          Length = 270

 Score = 34.3 bits (77), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 23  ALSDLFSAMIPNRV--SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF-- 78
           +L DL +  +PN +  S ++LG  +  A   G D   +A++L++G+I  ++    F    
Sbjct: 118 SLIDLDTMTLPNSLTESGLVLG-LIFQATRSGFDGSEMAINLILGIIGAVLGLWLFDIIR 176

Query: 79  ---------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS-VFILTVRMITN 128
                      MGGGD KL      W GW    L+  F    LG     V IL+ +M   
Sbjct: 177 WVGTIIFQQEAMGGGDPKLAAMIGAWLGWKYLLLTG-FLACALGAFFGIVAILSTQMGRR 235

Query: 129 HIPIFGMFV 137
           H   FG F+
Sbjct: 236 HPIRFGPFL 244


>gi|134291860|ref|YP_001115629.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4]
 gi|134135049|gb|ABO59374.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4]
          Length = 179

 Score = 34.3 bits (77), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 22/163 (13%)

Query: 16  PFCL----VFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIV-F 69
           P C+    + AA +DL S  IPNR+ +  L G+ +    L G+   ++A   L G     
Sbjct: 11  PLCVTLLVIVAASTDLASRRIPNRLVVAGLAGALVAQCALHGVPAGVLAW--LAGAATGL 68

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFV---------AILGGILSVF 119
            +   F+    M  GDVKL+ +   W G   +F +    FV         A+L G +   
Sbjct: 69  GLLLPFYLLRGMAAGDVKLMLAIGAWVGAQMTFYIVLATFVAGGIGALGFALLRGRMRRM 128

Query: 120 ILTVRMITNH---IPIFGMFV-PKSFLMKNKIPYGIAISMGGL 158
              V M+  H    P+ G    P        +PYG+AI++G L
Sbjct: 129 WTNVWMLVAHRAAAPLAGATDGPVESASVGALPYGVAIAVGTL 171


>gi|260062510|ref|YP_003195590.1| putative transmembrane HD family protein [Robiginitalea biformata
           HTCC2501]
 gi|88784075|gb|EAR15245.1| putative transmembrane HD family protein [Robiginitalea biformata
           HTCC2501]
          Length = 682

 Score = 34.3 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 33/151 (21%)

Query: 10  AVFLIPPFCLVFAALSDLFSA----------------MIPNRVSIVMLG--SFLLTAFLL 51
           A+  + P C++   L   F A                ++PN    + L   + ++T   +
Sbjct: 322 ALVFVVPLCILPLILKTFFDARLGLFVHVLTVLILGFVVPNSFEYIFLQIIAGIVTILTV 381

Query: 52  GMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
              Y+   L + VG I  I    +FAFNI+ GG +       VW       ++F FF  +
Sbjct: 382 SELYKRANLFISVGQITLIYILGYFAFNIIQGGSL----DNVVW-------VNFGFF--L 428

Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
           L G++++F+    +I  +  +FGM    S L
Sbjct: 429 LNGMITLFVQP--LIYIYEKMFGMVSDVSLL 457


>gi|73669011|ref|YP_305026.1| hypothetical protein Mbar_A1491 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396173|gb|AAZ70446.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 254

 Score = 34.3 bits (77), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 16  PFCLVFAALSDLFSAMIPNRVSIVMLGS---FLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           PF L+++  SDL S  + N+V   ML S   F+    L G    L+ L +L G++VF   
Sbjct: 12  PF-LLYSCYSDLNSRRVSNKVWKYMLASGSGFVFYEILTGGLSYLMPL-ILSGVLVFTAV 69

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           +  F     GGGD K L   ++ F   P F SF   +  L G+  + I T  ++ N
Sbjct: 70  YLLFQVGAFGGGDAKGLIVLSILFPSYPVF-SFSEKIYPLLGVPPIGIFTFTVLGN 124


>gi|107022591|ref|YP_620918.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054]
 gi|116689540|ref|YP_835163.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424]
 gi|170732844|ref|YP_001764791.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3]
 gi|105892780|gb|ABF75945.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054]
 gi|116647629|gb|ABK08270.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424]
 gi|169816086|gb|ACA90669.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3]
          Length = 164

 Score = 34.3 bits (77), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVG-LIVFIICFCFFA 77
           V  AL D+    IPN + I   G F+    L G   + +     L+G LI F+  F FF 
Sbjct: 15  VLVALEDIRHRRIPNSLVI---GGFVSAFVLAGHSPFGISVNQALIGVLIGFLSLFPFFV 71

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
             +MG  DVK+      W G  P  L +L+ +A L
Sbjct: 72  LRVMGAADVKVFAVLGAWCG--PHALLWLWIIASL 104


>gi|113476284|ref|YP_722345.1| type 4 prepilin peptidase 1 [Trichodesmium erythraeum IMS101]
 gi|110167332|gb|ABG51872.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Trichodesmium erythraeum IMS101]
          Length = 273

 Score = 34.3 bits (77), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 17/128 (13%)

Query: 26  DLFSAMIPNRVS----IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--- 78
           DL +  +PN ++    IV L   +LT F        +  +L++G+I  ++    F     
Sbjct: 121 DLDTMTLPNPLTQSGLIVGLFFQMLTTFEENFQVNNLVNYLIIGIIGAVVGLWLFDLISI 180

Query: 79  --------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
                    +MGGGD KL      W GW    L+  F    +G ++    + +R++    
Sbjct: 181 FGSIAFGQTVMGGGDAKLAAMIGAWLGWKYLLLT-CFLACAMGALVGGGAIALRLLDRRQ 239

Query: 131 PI-FGMFV 137
           PI FG F+
Sbjct: 240 PIPFGPFL 247


>gi|32452621|gb|AAP43983.1| TadV [Aggregatibacter actinomycetemcomitans]
 gi|109727127|gb|ABG45871.1| TadV [Aggregatibacter actinomycetemcomitans]
          Length = 142

 Score = 34.3 bits (77), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 20/152 (13%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           +A+ +I    L+  +++D+ S +I NR+ + +L  F +  F L + Y+ I   ++  L  
Sbjct: 6   NALVIITLSLLITLSITDIRSRLISNRIVLFLL--FAIIPFSL-LKYQTI--FVMPALCT 60

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
            II F  F+   +G GD+KL +               +  +AI  G +  F         
Sbjct: 61  LIIGFLLFSLRFIGAGDIKLAS---------------VLMLAIPSGEVFSFFFFTTFAGL 105

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
            + I G    +  + +N +PYG+AIS+G +I+
Sbjct: 106 GLIIIGWLFFRKSIKENGLPYGVAISLGFMIN 137


>gi|218961045|ref|YP_001740820.1| putative bifunctional prepilin leader peptidase and methylase
           [Candidatus Cloacamonas acidaminovorans]
 gi|167729702|emb|CAO80614.1| putative bifunctional prepilin leader peptidase and methylase
           [Candidatus Cloacamonas acidaminovorans]
          Length = 242

 Score = 34.3 bits (77), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 24/116 (20%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           FLIP F +      D    +IPN +SI +L + ++  F+ G D  +I      GL+   +
Sbjct: 99  FLIPIFFI------DALHQIIPNVLSIPLLITGIIFVFIPGNDVGIIN-----GLVTGAV 147

Query: 72  CFCFFAF-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
            FC   F             +GGGD+ L T+ A +FG T   + ++F ++ L GI+
Sbjct: 148 VFCLLLFLAWAYQKIRGTEGLGGGDIWLFTALATYFGLTG--IPYIFLLSALMGII 201


>gi|206559891|ref|YP_002230655.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia
           J2315]
 gi|198035932|emb|CAR51824.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia
           J2315]
          Length = 164

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGLIVFIICFCFFA 77
           V  AL D+    IPN + I   G F+    L G +   I+++  L+  L+ F+  F FF 
Sbjct: 15  VLVALEDIRHRRIPNSLVI---GGFVSAFVLAGHNPFGISVNQALIGALVGFLSLFPFFV 71

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
             +MG  DVK+      W G  P  L +L+ +A L
Sbjct: 72  LRVMGAADVKVFAVLGAWCG--PYALLWLWIIASL 104


>gi|197117919|ref|YP_002138346.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Geobacter bemidjiensis Bem]
 gi|197087279|gb|ACH38550.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Geobacter bemidjiensis Bem]
          Length = 274

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 68/132 (51%), Gaps = 15/132 (11%)

Query: 17  FC--LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI-----VF 69
           FC  LV     DL   +IP+ +++  + +    +F +    +L  L+ L+G++     +F
Sbjct: 124 FCSALVVVTFIDLEHQIIPDAITLPGIVAGFAASFFIP---QLGWLNSLIGILAGGGSLF 180

Query: 70  IICFCFFAF---NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
           ++ + + A    + MGGGD+KLL     + GW  + L  +F  +++G ++ V ++  R  
Sbjct: 181 LVAYIYQAIAKKDGMGGGDIKLLAMMGAFLGWK-AILFIIFTASLIGSVIGVSVMLARKE 239

Query: 127 TNHIPI-FGMFV 137
            + + I FG F+
Sbjct: 240 NSSLAIPFGPFL 251


>gi|84687269|ref|ZP_01015149.1| hypothetical protein 1099457000225_RB2654_21338 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664702|gb|EAQ11186.1| hypothetical protein RB2654_21338 [Rhodobacterales bacterium
           HTCC2654]
          Length = 171

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 21/152 (13%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFL---LTAFLLGM----DYELIALHLLVGLIVFIIC 72
           V+ A+SD+    IPN+  + + G +    L A  + +    DY    +HL V   + ++ 
Sbjct: 22  VWVAISDMSRMKIPNKAVMALFGVYAVVGLAAVAMSVITLPDYLWRYVHLAV---ILLVG 78

Query: 73  FCFFAFNIMGGGDVKLLTSTA--VWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           F   A  ++G GD K   + A  V  G   S  +F+F  AILGG    F+L    I   +
Sbjct: 79  FVMNAAGLLGAGDAKFAAAMAPFVALG-DLSVFAFIFAAAILGG----FVL--HRIAKRV 131

Query: 131 PIFGMFVPK-SFLMKNKIPYGIAISMGGLISY 161
                 VP      ++  P G+ + + GL++Y
Sbjct: 132 SFVRAAVPGWESWERDDFPMGLCLGI-GLVAY 162


>gi|134281870|ref|ZP_01768577.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305]
 gi|134246932|gb|EBA47019.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305]
          Length = 179

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 20/162 (12%)

Query: 16  PFCL----VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           P C+    V AA  DL S  IPNR+  + L   L+    L   +   A  L        +
Sbjct: 11  PLCVTLLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAGL 70

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-----MI 126
              F+    M  GDVKL+ +   W G T + L       ++GG  ++ ++  R     ++
Sbjct: 71  LLPFYLVRGMAAGDVKLMLAIGAWVGPTLA-LHIALATFVVGGAWALAVVARRGRFRKLL 129

Query: 127 TNHIPIF-GMFVPKSFLMKNK---------IPYGIAISMGGL 158
            N   +F G  +P+                +PYG+AI++G L
Sbjct: 130 ANLRHLFAGAALPRVASAARAAPEIDSVGMLPYGVAIAIGTL 171


>gi|59711118|ref|YP_203894.1| hypothetical protein VF_0511 [Vibrio fischeri ES114]
 gi|59479219|gb|AAW85006.1| hypothetical protein VF_0511 [Vibrio fischeri ES114]
          Length = 145

 Score = 33.9 bits (76), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 18/140 (12%)

Query: 20  VFAALSDLFSAMIPNRVS-IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           ++A   D+ +  I N +  I+M+  F       GM Y      LL  LI+  + F  F F
Sbjct: 16  IYAVFHDIKNRKISNNIVFIIMIIGFFSIFVKGGMSY------LLSPLIILFVGFILFKF 69

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           NI+  GD+K   + ++        L     +  LGG+ +    ++  +T +         
Sbjct: 70  NIIAAGDIKYYAAMSLMIE-QQYLLLVTCIILCLGGLQAYCQYSIYKLTGN--------- 119

Query: 139 KSFLMKNKIPYGIAISMGGL 158
               ++  +PYG+AIS+G L
Sbjct: 120 -ERWIERGVPYGVAISIGSL 138


>gi|170734871|ref|YP_001773985.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3]
 gi|169820909|gb|ACA95490.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3]
          Length = 179

 Score = 33.9 bits (76), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 26/165 (15%)

Query: 16  PFCL----VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FI 70
           P C+    V AA +D+ S  IPNR+ ++ L   L+   LL        L  L G    F 
Sbjct: 11  PLCVTLLAVAAASTDIASRRIPNRLVLLGLAGALVAQCLL-HGVPAGVLGWLAGAATGFG 69

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA--ILGGI--LSVFILTVRMI 126
           +   F+    M  GDVKL+ +   W G   + ++F   +A  + GGI  ++  +L  RM 
Sbjct: 70  LLLPFYLLRGMAAGDVKLMLAIGAWVG---AEMTFYIVLATFLAGGIGAIAYALLRGRMR 126

Query: 127 TNHIPIFGMFVPKSFLMKNK-------------IPYGIAISMGGL 158
                +  + V +S   + +             +PYG+AI++G L
Sbjct: 127 QVWTNVRTLIVRRSQAARAEADDGPVEIASVGTLPYGVAIAVGTL 171


>gi|289209346|ref|YP_003461412.1| prepilin peptidase [Thioalkalivibrio sp. K90mix]
 gi|288944977|gb|ADC72676.1| Prepilin peptidase [Thioalkalivibrio sp. K90mix]
          Length = 296

 Score = 33.9 bits (76), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFV 137
           MG GD KLL +   W GW  +    L   +++G ++ + ++ +R    +IPI FG ++
Sbjct: 217 MGYGDFKLLAALGAWLGWQ-ALPVILLLASLVGAVVGILLILLRGRDRNIPIPFGPYL 273


>gi|107028251|ref|YP_625346.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054]
 gi|116687162|ref|YP_840409.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424]
 gi|105897415|gb|ABF80373.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054]
 gi|116652877|gb|ABK13516.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424]
          Length = 179

 Score = 33.9 bits (76), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 26/165 (15%)

Query: 16  PFCL----VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FI 70
           P C+    V AA +D+ +  IPNR+ ++ L   L+   LL        L  L G    F 
Sbjct: 11  PLCVTLLAVAAASTDIATRRIPNRLVLLGLAGALVAQCLL-QGVPAGVLGWLAGAATGFG 69

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA--ILGGI--LSVFILTVRMI 126
           +   F+    M  GDVKL+ +   W G   + ++F   +A  + GGI  ++  +L  RM 
Sbjct: 70  LLLPFYLLRGMAAGDVKLMLAIGAWVG---AEMTFYIVLATFLAGGIGAIAYALLRGRMR 126

Query: 127 TNHIPIFGMFVPKSFLMKNK-------------IPYGIAISMGGL 158
                +  + V +S   + +             +PYG+AI++G L
Sbjct: 127 QMWTNVRTLIVRRSQAARAEADDGPVEIASVGTLPYGVAIAVGTL 171


>gi|86147470|ref|ZP_01065782.1| hypothetical protein MED222_21489 [Vibrio sp. MED222]
 gi|85834763|gb|EAQ52909.1| hypothetical protein MED222_21489 [Vibrio sp. MED222]
          Length = 176

 Score = 33.9 bits (76), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL----GMDYELIALHLLVGLIVFIICFC 74
           L+  ++ D+  + IPN+V I+    F+L  F+L    G  ++ + + L+  + +F     
Sbjct: 12  LIIVSVFDVKESRIPNKVLIL----FVLLYFILLINGGFSWDSLVISLMGAITLFFSGLF 67

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
            +    M  GDVK L    ++ GW  + L   +++ I  GI++ F L    + N+     
Sbjct: 68  LYLLKAMSAGDVKFLGVIGLYVGW-GNLLDTSYYILISSGIIATFYL----LYNNANSES 122

Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
           + V   F  K  +  G++     L +    Y  KV +
Sbjct: 123 LTVRNYFEEKLMLVSGMSTRTKNLSTVHSRYSNKVTM 159


>gi|307249761|ref|ZP_07531739.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858176|gb|EFM90254.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 108

 Score = 33.9 bits (76), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 17/93 (18%)

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTV 123
            ++  +I F  F  N++G GDVKLL   AV     P SF  F  F+    G+L       
Sbjct: 23  AILCLVIGFVLFLLNVIGAGDVKLL---AVLMLAVPSSFAIFFLFLTACSGLL------- 72

Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
                 I I G    +  + +  +PYGIAIS G
Sbjct: 73  ------IIIIGWLFYRQTIREKGLPYGIAISAG 99


>gi|152974831|ref|YP_001374348.1| peptidase A24A domain-containing protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023583|gb|ABS21353.1| peptidase A24A domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 240

 Score = 33.9 bits (76), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 12/78 (15%)

Query: 19  LVFAALSDLFSAMIPNRV----SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
           LV   L+DLF  MIPN V    S + L  ++++ F+  +D       +L G I+F + + 
Sbjct: 108 LVMITLTDLFYMMIPNAVLLSFSCIFLIEYMISPFIFWLD------SVLGGGIIFCVLYI 161

Query: 75  FFAF--NIMGGGDVKLLT 90
                 N +GGGDVKLL+
Sbjct: 162 LRMIYPNGLGGGDVKLLS 179


>gi|83749640|ref|ZP_00946623.1| Prepilin Peptidase; cpaA1 [Ralstonia solanacearum UW551]
 gi|207728108|ref|YP_002256502.1| prepilin peptidase protein [Ralstonia solanacearum MolK2]
 gi|207744156|ref|YP_002260548.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609]
 gi|83723701|gb|EAP70896.1| Prepilin Peptidase; cpaA1 [Ralstonia solanacearum UW551]
 gi|206591353|emb|CAQ56965.1| prepilin peptidase protein [Ralstonia solanacearum MolK2]
 gi|206595560|emb|CAQ62487.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609]
          Length = 177

 Score = 33.9 bits (76), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 35/166 (21%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI-------- 70
           +  AA SD+ +  IPN     ++GS L+ A +     + +A  L  G + ++        
Sbjct: 16  IAIAAASDVRARRIPNW----LVGSGLVAALI----GQCVAQGLAAGGMAWLGGTAVGMG 67

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVFILTVRMITNH 129
           +C   +    MG GDVKL+ +   + G   +F ++F+ F+A  GG+L++ ++ +R     
Sbjct: 68  MCIGIYVLGGMGAGDVKLMGAIGAFMGPFGAFHVAFVSFLA--GGVLALVMVLLRREGQR 125

Query: 130 -----------IPIFGMFVPKSFLMKNK-----IPYGIAISMGGLI 159
                      +P  G  +P     + +     +PY +A + G L+
Sbjct: 126 SLAGVSTLLLSLPFGGKAMPSQQHGEKRSGTIQLPYAVAFAAGTLL 171


Searching..................................................done


Results from round 2




>gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040406|gb|ACT57202.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 176

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL
Sbjct: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI
Sbjct: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
           LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA
Sbjct: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176


>gi|315121893|ref|YP_004062382.1| peptidase A24A prepilin type IV [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495295|gb|ADR51894.1| peptidase A24A prepilin type IV [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 178

 Score =  160 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 117/176 (66%), Positives = 144/176 (81%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           MKE KMVFS +FL+ PFCL+ A LSDLFS MIPNR+S+V+LGSFLL A  +G+ YE IAL
Sbjct: 1   MKEDKMVFSVIFLVLPFCLISAGLSDLFSTMIPNRISVVLLGSFLLIAPFVGLGYEEIAL 60

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           H+LVGL VFI CF FF+ NIMGGGD KLLT+ ++WFGW  S L FLF+VAI GGIL++ +
Sbjct: 61  HVLVGLFVFIACFFFFSVNIMGGGDAKLLTTASLWFGWNISLLYFLFYVAIFGGILALVV 120

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
           L +R IT +IP+   FVP+SF MKNKIPYG+AIS+GGL+SYPDS+LFK+AL G+S 
Sbjct: 121 LLIREITRYIPLLDKFVPRSFHMKNKIPYGVAISIGGLVSYPDSHLFKIALEGIST 176


>gi|150398539|ref|YP_001329006.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419]
 gi|150030054|gb|ABR62171.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419]
          Length = 170

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 114/170 (67%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M  +A+F++ PFCL FAA SDLF+  IPNR+S ++L SF++ + L G+D     LH+   
Sbjct: 1   MTIAAIFVVFPFCLAFAAFSDLFTMTIPNRISAIVLVSFVVISPLAGLDASKACLHVAAA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           ++VF  CFC FA N+MGGGD KLLT++A+WFG+  S + FL +V+  GG+L++ +L +R 
Sbjct: 61  VLVFGACFCLFAVNVMGGGDAKLLTASAIWFGFEASLIDFLLYVSAFGGLLTIAVLLLRS 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
             N I    + VP+  L   KIPYGIAI++GG  +YP S L K+AL   S
Sbjct: 121 QENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMKLALTQFS 170


>gi|209551757|ref|YP_002283674.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537513|gb|ACI57448.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 170

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 82/170 (48%), Positives = 111/170 (65%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +AVF+I P CL  A  SDLF+  IPNRVS++++ SF + A L G+  + I +HL   
Sbjct: 1   MIAAAVFMILPLCLAMAGFSDLFTMTIPNRVSLILIVSFFVLAPLSGLGLQAIGMHLAAA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IVF  CF  FAFN+MGGGD KLL++TA+WFG   S L  +  VAI+GG +++ IL VR 
Sbjct: 61  AIVFSACFALFAFNVMGGGDAKLLSATALWFGLNESLLFLMSDVAIIGGFITLLILMVRA 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
             + I   G+ VP S L+  KIPYGIAI++GG +++P S LF   L  L 
Sbjct: 121 QADTILAIGLPVPNSILIAKKIPYGIAIAIGGFMAFPSSPLFLTTLESLK 170


>gi|118589701|ref|ZP_01547106.1| peptidase A24A, prepilin type IV [Stappia aggregata IAM 12614]
 gi|118437787|gb|EAV44423.1| peptidase A24A, prepilin type IV [Stappia aggregata IAM 12614]
          Length = 168

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 2/166 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           MV +A+ +I P  + F   SDL +  I NRVS++++  F + A   G+  +   +H L  
Sbjct: 1   MVQAAILVIFPMLVAFGGASDLLTMTIQNRVSLLLIAGFAILAVATGLPLQAWGMHALAF 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +VF  CF FFAF  MGGGDVK +++ A+W G++   L F+ FVAI G  L+  +L +R 
Sbjct: 61  AVVFAPCFLFFAFGWMGGGDVKFISAIALWIGFSQELLMFVLFVAIYGMFLTFGLLIMRQ 120

Query: 126 IT--NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
            +    +     +  +    K+ IPYGIAI++ GL  Y  +Y F +
Sbjct: 121 QSVVPSVLYRQEWFARLHDSKSGIPYGIAIAIAGLQVYSSTYWFDL 166


>gi|90425195|ref|YP_533565.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris
           BisB18]
 gi|90107209|gb|ABD89246.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris
           BisB18]
          Length = 174

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 2/165 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+     L+ P  + FAA SDLF+  I NRVS++++  FL  A L GM  + I  H+  G
Sbjct: 2   MLDLLRVLLFPALMAFAAASDLFTMTISNRVSLLLIVGFLALAGLGGMGLQEILSHIAAG 61

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
             V  I F  FAF  +GGGD K+ ++ A+WFG+    L +L + ++ GG L++ +L  R 
Sbjct: 62  GSVLAIAFACFAFGWVGGGDAKVASAAALWFGFD-HLLEYLVYASLFGGALTLLLLQFRQ 120

Query: 126 ITNHIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
                 + G  ++ +    +  IPYGIA++ G L+ YP++   + 
Sbjct: 121 WPLPYALCGQPWLLRLHAKETGIPYGIALATGALMIYPETEWIRA 165


>gi|148258233|ref|YP_001242818.1| putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp.
           BTAi1]
 gi|146410406|gb|ABQ38912.1| Putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp.
           BTAi1]
          Length = 174

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 95/160 (59%), Gaps = 2/160 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           A  L+ P  + FAA SDLF+  I NRVS  +L  FL+ A L GM  + +  H+  G ++ 
Sbjct: 6   ARLLLFPALMAFAAASDLFTMTISNRVSFALLAGFLVLAPLSGMGMQDMLSHVGAGALLL 65

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++ F  FAF  +GGGD K+ ++ A+WFG+    +++L + +I GG+L++ ++  R     
Sbjct: 66  VVAFACFAFGWIGGGDAKVASAAALWFGFA-HLMNYLLYASIFGGVLTLLLMQFRQWPLP 124

Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
             + G  ++ +    ++ +PYGIA+++G L+ YPD+   K
Sbjct: 125 YMLAGQPWLARLHARESGVPYGIALALGALMVYPDTDWVK 164


>gi|15963892|ref|NP_384245.1| putative pilus assembly transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|15073067|emb|CAC41526.1| Putative pilus assembly transmembrane protein [Sinorhizobium
           meliloti 1021]
          Length = 174

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 76/173 (43%), Positives = 110/173 (63%)

Query: 3   ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
           E +M+ + + ++ PF L  AALSDL +  IPNRVS+V+L SF   A L G+D   + LH 
Sbjct: 2   ELEMINATILVVFPFSLALAALSDLLTMTIPNRVSLVLLVSFFFVAPLAGLDLAQLGLHT 61

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +   ++F + F  FA N+MGGGD KLLT++A WFG+  S ++FL +V+  GG L++ +L 
Sbjct: 62  VAAGLIFAVSFALFAANVMGGGDAKLLTASAAWFGFNESLVTFLVYVSFFGGFLTLIVLL 121

Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
           +R   N I    + VP+  L   KIPYGIAI++GG  +YP S L ++A   LS
Sbjct: 122 LRSKENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMQLAFAQLS 174


>gi|222084467|ref|YP_002542996.1| prepilin peptidase protein [Agrobacterium radiobacter K84]
 gi|221721915|gb|ACM25071.1| prepilin peptidase protein [Agrobacterium radiobacter K84]
          Length = 170

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 113/169 (66%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +A  LI P CL  AA+SDL +  IPNRVS+++LG+F++ A  +G+    I +H+   
Sbjct: 1   MLEAATLLIFPLCLSVAAISDLLTMTIPNRVSLILLGAFIVLAPFVGLTLPEIGMHVAGA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IVF  CF  FA N+MGGGD KLL ++A+WFG+ PS L+FL +VA +GG +++ IL +R 
Sbjct: 61  AIVFCACFALFALNVMGGGDAKLLAASALWFGFDPSLLAFLVYVAFIGGAVTIAILMIRS 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
            ++ I   G+ +P S L+  KIPYGIAI++GG +++P S L   A   +
Sbjct: 121 QSSAIMAMGLPLPNSLLIAKKIPYGIAIAIGGFLAFPSSPLVVAAASHI 169


>gi|75674501|ref|YP_316922.1| peptidase A24A, prepilin type IV [Nitrobacter winogradskyi Nb-255]
 gi|74419371|gb|ABA03570.1| peptidase A24A, prepilin type IV [Nitrobacter winogradskyi Nb-255]
          Length = 174

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 2/164 (1%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +  A  L+ P  + FAA SDL +  I NRVS++++  FL+ A L GM    +  H   GL
Sbjct: 3   LDVARLLLFPALMAFAAASDLLTMTISNRVSLLLVAGFLVLAPLSGMGLHEMLSHAGAGL 62

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
            V ++ F  FA   +GGGD K+  + A+WFG+    L +L + ++ GG L++ +L  R  
Sbjct: 63  AVLVVAFSCFAMGWVGGGDAKVAAAAALWFGFG-HTLEYLVYASLFGGALTLLLLQFRQW 121

Query: 127 TNHIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
                ++G  ++ +       IPYGIA++   L+ YP++   + 
Sbjct: 122 PLPASLYGQDWLLRLHGKNTGIPYGIALAFAALLIYPETDWVRA 165


>gi|209886529|ref|YP_002290386.1| peptidase A24A, prepilin type IV [Oligotropha carboxidovorans OM5]
 gi|209874725|gb|ACI94521.1| peptidase A24A, prepilin type IV [Oligotropha carboxidovorans OM5]
          Length = 174

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 2/168 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           A   + P  + FAA+SD+ +  I NRVS++++G F + A L GM+ E I  H   G  V 
Sbjct: 6   ARLFLFPALMAFAAVSDILTMTISNRVSLLLIGGFFVLAGLTGMNLETIGWHAAAGATVL 65

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++ F  FAF  +GGGD K+  S A+WFG+    L +L   +I+GG L++ IL +R     
Sbjct: 66  VVAFTCFAFGWIGGGDAKIAASAALWFGFA-HLLDYLVAASIVGGALTLIILQLRRWPMP 124

Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
             +    ++ +       IPYG+A++ G ++ YP++   ++A    SA
Sbjct: 125 AFLTSQDWLVRLHDKATGIPYGVALAAGAMLVYPNTEWVRLAAFATSA 172


>gi|254502136|ref|ZP_05114287.1| peptidase, A24 (type IV prepilin peptidase) family [Labrenzia
           alexandrii DFL-11]
 gi|222438207|gb|EEE44886.1| peptidase, A24 (type IV prepilin peptidase) family [Labrenzia
           alexandrii DFL-11]
          Length = 170

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 98/167 (58%), Gaps = 3/167 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ + V ++ P  + FA  SDL +  I NRVSI+++  F++ A + GM      +H L  
Sbjct: 1   MIEAVVLVLFPMLVAFAGASDLLTMKIGNRVSILLIIGFIVLAAVNGMPVNDWGMHGLGL 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           ++VF+ CF FFA   MGGGDVKL++S  +WFG+ P  + FLF VA+LG +L++ ++ +R 
Sbjct: 61  VVVFLPCFAFFAAGWMGGGDVKLISSVGLWFGFGPILIDFLFLVALLGCVLTLSLVVIRS 120

Query: 126 ITNHIPIF---GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
               +P       +  +    K+ IPYGIAIS   LI YP S  F +
Sbjct: 121 SLVVLPAPLRGQEWALRLHDAKSGIPYGIAISAAALIVYPRSDWFSM 167


>gi|146338125|ref|YP_001203173.1| putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp.
           ORS278]
 gi|146190931|emb|CAL74936.1| Putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp.
           ORS278]
          Length = 174

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 92/161 (57%), Gaps = 2/161 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           A  LI P  + FAA SDL +  I NRVS+ ++  FL+ A L GM    + +H   G  + 
Sbjct: 6   ARLLIFPALMAFAAASDLLTMTISNRVSLALVAGFLVMAPLSGMSMADMLMHCGAGASLL 65

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           +I F  FAF  +GGGD K+ ++ A+WFG+    +++L + +I GG+L++ ++  R     
Sbjct: 66  VIAFTCFAFGWIGGGDAKVASAAALWFGFA-HLMNYLLYASIFGGVLTLALMQFRQWPLP 124

Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
             + G  ++ +     + +PYGIA+++G L+ YP++   K 
Sbjct: 125 YGLAGQPWLARLHAKDSGVPYGIALALGALMVYPETEWVKA 165


>gi|328545281|ref|YP_004305390.1| peptidase A24A, prepilin type IV [polymorphum gilvum SL003B-26A1]
 gi|326415023|gb|ADZ72086.1| Peptidase A24A, prepilin type IV [Polymorphum gilvum SL003B-26A1]
          Length = 170

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/170 (34%), Positives = 97/170 (57%), Gaps = 2/170 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +A+ ++ P  + FAA SDL +  IPNRVS+++ G+F++ A   GM    IALH + G
Sbjct: 1   MLEAALLVVFPVLVAFAAASDLLTMTIPNRVSLLLAGAFVVLAVATGMSVAEIALHAVAG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
             V  +CF  FA   MGGGD K+ ++  +W G +   ++FL    I G +L++ +L+ R 
Sbjct: 61  GTVLAVCFFLFAMGWMGGGDAKIASAIGLWLGLSSHLVAFLMLTTIYGMVLTIVLLSFRR 120

Query: 126 ITNHIPIFGM--FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
           +       G   ++ +    +  IPYGIAI+   L +YP ++ F +A +G
Sbjct: 121 LPYLPGGLGRQEWMLRLHDTRTGIPYGIAIAAAALQTYPTTHWFALAALG 170


>gi|91977983|ref|YP_570642.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB5]
 gi|91684439|gb|ABE40741.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB5]
          Length = 174

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 2/161 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
               + P  + FAA SDLF+  I NRVS++++  F++ A L GM    IA H   GL V 
Sbjct: 6   LRLSLFPALMAFAAASDLFTMTISNRVSLLLVAGFIVLAPLTGMGLYEIASHFGAGLAVL 65

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
            + F  FA   +GGGD K+  + A+WFG+    L +L + ++ GG L++ +L+ R     
Sbjct: 66  AVAFGCFAMGWVGGGDAKVAAAAALWFGFG-HLLDYLVYASLFGGALTLLLLSFRQWPLP 124

Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
             + G  ++ +    +  IPYGIA++MG L  YP +   + 
Sbjct: 125 YQLAGQGWLMRLHAKETGIPYGIALAMGALAVYPQTEWIQA 165


>gi|325291661|ref|YP_004277525.1| components of type IV pilus, prepilin peptidase [Agrobacterium sp.
           H13-3]
 gi|325059514|gb|ADY63205.1| components of type IV pilus, prepilin peptidase [Agrobacterium sp.
           H13-3]
          Length = 170

 Score =  128 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 111/170 (65%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           MV +A+FLI PFCL FAAL+DLFS  IPNR+++ +L SF++ A   GMD +  A+ +   
Sbjct: 1   MVIAAIFLILPFCLAFAALNDLFSMTIPNRITLFLLLSFIVVAPFSGMDLQTFAMSIAAA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
             VF  CF  FA N MGGGD KLLT+  VW+G+  S + FL  V  +GG+L++ IL +R 
Sbjct: 61  AAVFFACFILFAANAMGGGDAKLLTAVTVWYGFNISLIEFLLAVTFIGGVLTLGILLLRS 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
            +  I   G+ +P S ++  KIPYGI I++ GL++Y ++ L K A+  L+
Sbjct: 121 RSQEILAIGIPIPDSLMVVKKIPYGIGIAIAGLLTYGETPLVKAAIASLT 170


>gi|85713503|ref|ZP_01044493.1| peptidase A24A, prepilin type IV [Nitrobacter sp. Nb-311A]
 gi|85699407|gb|EAQ37274.1| peptidase A24A, prepilin type IV [Nitrobacter sp. Nb-311A]
          Length = 174

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 2/161 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           A  L+ P  + FAA SDL +  I NRVS++++  FLL A L GM    +  H   GL V 
Sbjct: 6   ARLLLFPALMAFAAASDLLTMTISNRVSLLLIAGFLLLAPLSGMGLHEMLSHAGAGLAVL 65

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++ F  FA   +GGGD K+  ++A+WFG+    L +L + ++ GG L++ +L  R     
Sbjct: 66  VVAFSCFAMGWIGGGDAKVAAASALWFGFG-HTLEYLVYASLFGGALTLLLLQFRQWPLP 124

Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
             ++   ++ +       IPYGIA++   L+ YP++     
Sbjct: 125 ASLYSQDWLLRLHGRNAGIPYGIALAFAALLIYPETDWVSA 165


>gi|307315789|ref|ZP_07595303.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C]
 gi|307320424|ref|ZP_07599841.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83]
 gi|306893990|gb|EFN24759.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83]
 gi|306898557|gb|EFN29230.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C]
          Length = 170

 Score =  127 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 108/170 (63%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ + + ++ PF L  AALSDL +  IPNRVS+V+L SF   A L G+D   + LH +  
Sbjct: 1   MINATILVVFPFSLALAALSDLLTMTIPNRVSLVLLVSFFFVAPLAGLDLAQLGLHTVAA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            ++F + F  FA N+MGGGD KLLT++A WFG+  S ++FL +V+  GG L++ +L +R 
Sbjct: 61  GLIFAVSFALFAANVMGGGDAKLLTASAAWFGFNESLVTFLVYVSFFGGFLTLIVLLLRS 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
             N I    + VP+  L   KIPYGIAI++GG  +YP S L ++A   LS
Sbjct: 121 KENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMQLAFAQLS 170


>gi|15887575|ref|NP_353256.1| components of type IV pilus, prepilin peptidase [Agrobacterium
           tumefaciens str. C58]
 gi|15155114|gb|AAK86041.1| components of type IV pilus, prepilin peptidase [Agrobacterium
           tumefaciens str. C58]
          Length = 170

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 113/169 (66%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +A+FLI P CL FAAL+DLFS  IPN +++V+L SF   A   GMD++   L L  G
Sbjct: 1   MIVAAIFLILPLCLCFAALNDLFSMTIPNVITVVLLLSFAFIAPFAGMDFQTFGLSLAGG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           LIVF+ CF  FA N+MGGGD KLLT  AVW+G+  S + FL  V ++GG L+V IL +R 
Sbjct: 61  LIVFLGCFALFAANVMGGGDAKLLTGAAVWYGFNISLVEFLLAVTLVGGALTVGILLLRS 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
            +  I  FG+ +P S ++  KIPYGI I++ GL++Y ++ L K A+  +
Sbjct: 121 RSQEIMAFGIPIPDSLMVAQKIPYGIGIAIAGLLTYGEAPLVKAAIASI 169


>gi|307943143|ref|ZP_07658488.1| peptidase A24A prepilin type IV [Roseibium sp. TrichSKD4]
 gi|307773939|gb|EFO33155.1| peptidase A24A prepilin type IV [Roseibium sp. TrichSKD4]
          Length = 169

 Score =  126 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 67/163 (41%), Positives = 104/163 (63%), Gaps = 2/163 (1%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + + + L  PF ++ AA+SDL +  IPN++SIV+   F L A ++G+ ++ I LHL  G 
Sbjct: 1   MLAIMSLAFPFLVIRAAVSDLLTMTIPNKISIVLCVLFALYAPIVGLGWQDIGLHLAGGA 60

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-- 124
           +VF++CFC FA N MGGGD KLLT+ A+WFGW+   L+FLF  A+ G +L++F++ +R  
Sbjct: 61  VVFVVCFCMFAMNWMGGGDAKLLTAVALWFGWSADLLNFLFATAVFGMLLTLFLILIRPV 120

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
           ++         ++      K  IPYG+AI+ G L+ YP S L+
Sbjct: 121 LVLPERLARIEWLTHLLHPKTGIPYGLAIAAGALLVYPTSPLY 163


>gi|241207155|ref|YP_002978251.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861045|gb|ACS58712.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 170

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 85/170 (50%), Positives = 114/170 (67%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +AVFLI P CL  AA SDLF+  IPNR+S+++  SFL+ A   G+  E+I +HL   
Sbjct: 1   MIAAAVFLILPLCLAMAAFSDLFTMTIPNRISVILTASFLVLAPFSGLGLEMIGMHLAGA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IVF  CF  FAFN+MGGGD KLL++TA+WFG   S L  +  VA +GG++++ IL VR 
Sbjct: 61  AIVFSACFALFAFNVMGGGDAKLLSATALWFGLNESLLFLMTDVAAIGGLITLLILLVRT 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
            +N I   G+ VP S L+  KIPYGIAI++GG +++P S LF  AL  L 
Sbjct: 121 QSNTILAIGLPVPNSVLLAKKIPYGIAIAIGGFMAFPSSPLFLAALESLK 170


>gi|116249979|ref|YP_765817.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254627|emb|CAK05701.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 170

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 112/170 (65%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +AVF+I P CL  AA SDLF+  IPNR+S+++  SF + A L G+    I +HL   
Sbjct: 1   MIAAAVFVILPLCLAMAAFSDLFTMTIPNRISVILTASFFVLAPLSGLGLAEIGMHLAGA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IVF  CF  FAFN+MGGGD KL+++ A+WFG   S L  +  VA++GG++++ IL VR 
Sbjct: 61  AIVFSACFALFAFNVMGGGDAKLMSAAALWFGLNESLLFLMTDVAMIGGLITLLILLVRG 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
            ++ I   G+ VP S L+  KIPYGIAI++GG +++P S LF  AL  L 
Sbjct: 121 QSDTILAIGLPVPNSVLLAKKIPYGIAIAIGGFMAFPSSPLFLAALESLK 170


>gi|110636418|ref|YP_676626.1| peptidase A24A, prepilin type IV [Mesorhizobium sp. BNC1]
 gi|110287402|gb|ABG65461.1| peptidase A24A, prepilin type IV [Chelativorans sp. BNC1]
          Length = 173

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/172 (40%), Positives = 107/172 (62%), Gaps = 1/172 (0%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           MV +A+ +I PFC+ FAA+SD+ S  I NRVSI+++ SF + A L+GM    I +H L+G
Sbjct: 1   MVEAAILVIFPFCMAFAAVSDMISLTIANRVSILLVLSFAVLAPLVGMPVAEIGMHFLLG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
             V +  F  FA   MGGGD KL+ ++AVWFG+ P  + +L   A+LGG L++ +++ R 
Sbjct: 61  GTVLLATFAVFAIGGMGGGDAKLMAASAVWFGFNPGLMDYLLATALLGGALTLALVSFRR 120

Query: 126 ITNHIPIFGMFVPKSF-LMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
                 +    + + F   K+ IPYG+A+ +GGLI +P + L + A+  L+A
Sbjct: 121 SAFSPLVAHHVLLRHFAEEKSGIPYGVALGLGGLICFPQTPLMQWAMERLAA 172


>gi|254473700|ref|ZP_05087095.1| peptidase A24A, prepilin type IV [Pseudovibrio sp. JE062]
 gi|211957086|gb|EEA92291.1| peptidase A24A, prepilin type IV [Pseudovibrio sp. JE062]
          Length = 170

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/165 (32%), Positives = 95/165 (57%), Gaps = 2/165 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ + + +I P  L  AA  DLF+  IPN+++++++ +F+  AFLL +  + + +   +G
Sbjct: 1   MIANGLLIIFPLLLAVAAFFDLFTMTIPNKLNLLLVVAFVAMAFLLQLPLQQVGMSFALG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
             V +I F  FA  +MGGGDVK L + ++W G + + L F+   +I GG L++ IL +R 
Sbjct: 61  FGVMVIGFGLFALGVMGGGDVKFLAAISLWLGLSMNMLDFILLTSIYGGALTLVILALRK 120

Query: 126 IT--NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
           +           ++ K    K+ +PYGIAI++ G+  YP++  F 
Sbjct: 121 VPYFPQFMHGQAWLLKLHDKKSGVPYGIAIAIAGIQVYPNTLWFS 165


>gi|227823969|ref|YP_002827942.1| type IV prepilin peptidase CpaA [Sinorhizobium fredii NGR234]
 gi|227342971|gb|ACP27189.1| type IV prepilin peptidase CpaA [Sinorhizobium fredii NGR234]
          Length = 174

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 78/166 (46%), Positives = 110/166 (66%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M  + + +I PFCL  AA SDLF+  IPNR+S ++L +F++ A L G     I+LH+   
Sbjct: 1   MTIACILVILPFCLALAAFSDLFTMTIPNRISAILLAAFIVVAPLAGFGMGEISLHIAAA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +VF++CFC FA ++MGGGD KLLT++AVWFG   S + FL +V+I GG+L++ +L +R 
Sbjct: 61  AVVFVVCFCLFAASVMGGGDAKLLTASAVWFGLDASLVDFLVYVSIFGGLLTLAVLLLRR 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
             N I   G+ VP+  L   KIPYGIAI+MGG  +YP S L + A 
Sbjct: 121 QENAILASGIPVPQLLLTAKKIPYGIAIAMGGFAAYPSSPLMEAAF 166


>gi|115525747|ref|YP_782658.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris
           BisA53]
 gi|115519694|gb|ABJ07678.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris
           BisA53]
          Length = 174

 Score =  123 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 2/161 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
               + P  + FAA SDL +  I NRVS++++  F   A L GM ++ + +H   G  V 
Sbjct: 6   LRLFLFPALMAFAAASDLLTMTISNRVSLLLVLGFFGMALLSGMGWQAVLMHASAGGTVL 65

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++ F  FA   +GGGD K+ ++ A+WFG+    L +L + ++ GG L++ +L  R     
Sbjct: 66  LVAFGCFAMGWIGGGDAKVASAAALWFGFD-QLLQYLVYASLFGGALTLMLLQFRQWPLP 124

Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
             + G  ++ +       IPYGIA++ G L+ YP +   + 
Sbjct: 125 GVLRGQPWLLRLHSNATGIPYGIALATGALMIYPHTAWIRA 165


>gi|92116015|ref|YP_575744.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14]
 gi|91798909|gb|ABE61284.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14]
          Length = 174

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 2/164 (1%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +  A  L+ P  + FAA SDL +  I NRVS++++  FL+ A L GM    + LH   GL
Sbjct: 3   LDVARLLLFPALMAFAAASDLLTMTISNRVSLLLVAGFLVVAALSGMSLHDMLLHAGAGL 62

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
            V ++ F  FA   +GGGD K+  + A+WFG+    L +L + ++ GG L++ +L  R  
Sbjct: 63  AVLLVAFTCFAMGWVGGGDAKVAAAAALWFGFG-HLLEYLVYASLFGGALTLLLLQFRQW 121

Query: 127 TNHIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
                 +   ++ +       IPYGIA+++G L+ YP++   K 
Sbjct: 122 PLPALFYSQDWLLRLHGKDTGIPYGIALALGALLIYPETGWIKA 165


>gi|323137423|ref|ZP_08072501.1| peptidase A24A prepilin type IV [Methylocystis sp. ATCC 49242]
 gi|322397410|gb|EFX99933.1| peptidase A24A prepilin type IV [Methylocystis sp. ATCC 49242]
          Length = 168

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 2/163 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +   ++ P  +VFAA SDLF+  IPNRVS +++  +L  A  L +  +   LH+  G
Sbjct: 1   MIEALALIVFPTMMVFAAFSDLFTMTIPNRVSALLVLVYLALAVYLPIPLQTFGLHVSSG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           L +  + F  F F  +GGGD KL ++TA+W GW    L +    +I GG+L+V I+ +R 
Sbjct: 61  LAMLALTFVLFQFGWVGGGDAKLASATALWLGW-EHLLDYGLVASIAGGVLTVIIIELRR 119

Query: 126 ITNHIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
                 +  + F+ +     N +PYGIA+++ GL+ YP + LF
Sbjct: 120 HDLPRRVLSVAFIARLAEKTNGVPYGIALAVAGLLVYPQTGLF 162


>gi|299132285|ref|ZP_07025480.1| peptidase A24A prepilin type IV [Afipia sp. 1NLS2]
 gi|298592422|gb|EFI52622.1| peptidase A24A prepilin type IV [Afipia sp. 1NLS2]
          Length = 174

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 2/161 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           A   + P  + FAA SDL +  I NRVS++++  F + A + GM +E I  H L GL V 
Sbjct: 6   ARLFLFPALMAFAAASDLLTMTISNRVSLLLIAGFFVLAIVTGMGWEAIGWHALAGLSVL 65

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           II F  FAF  +GGGD K+  +TA+WFG+    L +L   ++LGG+L++ IL  R  T  
Sbjct: 66  IIAFACFAFGWIGGGDAKVAAATALWFGFG-YLLDYLLLASVLGGVLTLAILQFRNWTLP 124

Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
             + G  ++ +       IPYGIA++   L+ YPD+   + 
Sbjct: 125 TWLLGQDWLVRLHGKDTGIPYGIALAAAALLIYPDTDWTRA 165


>gi|296444398|ref|ZP_06886363.1| peptidase A24A prepilin type IV [Methylosinus trichosporium OB3b]
 gi|296258045|gb|EFH05107.1| peptidase A24A prepilin type IV [Methylosinus trichosporium OB3b]
          Length = 167

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 1/164 (0%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +   ++ P  +VFAA +DL +  IPNRVSI ++  F   A    M   +   H   G
Sbjct: 1   MIEAVALVLFPTLMVFAAFTDLLTMTIPNRVSIALVVIFAALAAYTQMPLAIALSHASCG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           +++ I+ F  F    +GGGD KL ++TA+W GW    L +    +++GG L++ IL +R 
Sbjct: 61  MVMLIVTFAMFQLGWIGGGDAKLASATALWLGWD-HLLDYGLAASLIGGALTLVILELRR 119

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
                                +PYGIA+++GGL+ YP S ++ +
Sbjct: 120 REPRAVADSPRFAHLCDSMAGVPYGIALAIGGLLIYPQSRVWTL 163


>gi|190889879|ref|YP_001976421.1| prepilin peptidase [Rhizobium etli CIAT 652]
 gi|190695158|gb|ACE89243.1| prepilin peptidase protein [Rhizobium etli CIAT 652]
          Length = 170

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 111/170 (65%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ + VF++ P CL  AA SDLF+  IPNRVS++++ SFL+ A  LG   + I +HL   
Sbjct: 1   MIATGVFVVLPLCLAMAAFSDLFTMTIPNRVSLILIVSFLVLAPFLGFGLQAIGMHLAAA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IV   CF  FAFN+MGGGD KLL++TA+WFG   S    +  VA +GG++++ IL VR 
Sbjct: 61  AIVLAACFALFAFNVMGGGDAKLLSATALWFGLNQSLTLLMADVAAVGGLITLLILLVRT 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
            +N I   G+ +P S L+  KIPYGIAI++GG +++P S +F  AL  L 
Sbjct: 121 QSNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESLK 170


>gi|222147184|ref|YP_002548141.1| component of type IV pilus prepilin peptidase protein
           [Agrobacterium vitis S4]
 gi|221734174|gb|ACM35137.1| component of type IV pilus prepilin peptidase protein
           [Agrobacterium vitis S4]
          Length = 172

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 108/170 (63%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+   + LI P CL  AA +DLF   IPN + +V+L  F   A +LG+   L  LHL  G
Sbjct: 1   MLAVTLSLIMPLCLALAAFTDLFEMKIPNAIPLVLLIGFAALALVLGLPIGLAGLHLTAG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           LIVF  CF  FA N+MGGGD KLLT+ AVW+G+  S + FL  VA+ GG+L++ IL +R 
Sbjct: 61  LIVFFGCFTLFAVNVMGGGDAKLLTAAAVWYGFNISLVEFLIEVAMFGGVLTLMILALRS 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
             N +   G+ +P+S +++ KIPYGIAI++GG  S+  + +  +AL  +S
Sbjct: 121 QANTVMALGLRLPRSLIVEKKIPYGIAIAIGGFCSFLSAPVVTLALATVS 170


>gi|327194696|gb|EGE61542.1| prepilin peptidase protein [Rhizobium etli CNPAF512]
          Length = 170

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 111/170 (65%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ + VF++ P CL  AA SDLF+  IPNRVS++++ SFL+ A  LG   + I +HL   
Sbjct: 1   MIAAGVFVVLPLCLAMAAFSDLFTMTIPNRVSLILIVSFLVLAPFLGFGLQAIGMHLAAA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IV   CF  FAFN+MGGGD KLL++TA+WFG   S    +  VA +GG++++ IL VR 
Sbjct: 61  AIVLAACFALFAFNVMGGGDAKLLSATALWFGLNQSLTLLMADVAAVGGLITLLILLVRT 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
            +N I   G+ +P S L+  KIPYGIAI++GG +++P S +F  AL  L 
Sbjct: 121 QSNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESLK 170


>gi|27376552|ref|NP_768081.1| pilus assembly protein prepilin peptidase subunit [Bradyrhizobium
           japonicum USDA 110]
 gi|27349693|dbj|BAC46706.1| pilus assembly protein prepilin peptidase subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 174

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 2/165 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           ++  A  L+ P  + FAA SDLF+  I NRVS+ ++  F   A   GM    +  H+  G
Sbjct: 2   ILDLARLLLFPALMAFAAASDLFTMTISNRVSLALVAGFFALALSGGMAPYEMLGHVGAG 61

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +V ++ F  FA   +GGGD K+  S A+WFG+    ++FL + ++ GG L++ +L  R 
Sbjct: 62  ALVLVVAFTCFAMGWVGGGDAKVAASVALWFGFA-QLMNFLLYASLFGGALTLLLLQFRQ 120

Query: 126 ITNHIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
                 + G  ++ +    ++ IPYGIA+++  L+ YP++   K 
Sbjct: 121 WPLPYGLAGQAWLARLHAKESGIPYGIALALSALMVYPETEWVKA 165


>gi|39936738|ref|NP_949014.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris CGA009]
 gi|192292564|ref|YP_001993169.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris TIE-1]
 gi|39650594|emb|CAE29117.1| putative type IV prepilin peptidase, cpaA [Rhodopseudomonas
           palustris CGA009]
 gi|192286313|gb|ACF02694.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris TIE-1]
          Length = 174

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           + P  + FAA SDL +  I NR+S++++  FL+ A L G+    I LH   G +V  + F
Sbjct: 10  LFPALMAFAATSDLLTMTISNRISLLLVAGFLVLAPLTGLGAYDILLHFGAGALVLAVAF 69

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             FA   +GGGD K++ + A+WFG+    L +L + ++ GG L++ +L  R       + 
Sbjct: 70  GCFAMGWIGGGDAKVVAAAALWFGFD-HLLDYLLYASLFGGALTLLLLGFRQWPLPYRLA 128

Query: 134 GM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
              +V +    +  IPYGIA++MG L+ YP +   K 
Sbjct: 129 CQGWVLRLHDQQTGIPYGIALAMGALVIYPHTEWIKA 165


>gi|86748909|ref|YP_485405.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris HaA2]
 gi|86571937|gb|ABD06494.1| Peptidase A24A, prepilin type IV [Rhodopseudomonas palustris HaA2]
          Length = 173

 Score =  119 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 2/165 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
              L+ P  + FAA SDLF+  I NRVS++++  FL  A + GM      LHL  G+ V 
Sbjct: 6   LRLLLFPALMAFAAASDLFTMTISNRVSLLLVAGFLALAPMSGMSLADFGLHLGAGMTVL 65

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
            I F  FA   +GGGD K+  + A+WFG+    + FL + ++ GG L++ +L  R     
Sbjct: 66  AIAFGCFAMGWIGGGDAKVAAAAALWFGFA-HLMDFLLYASLFGGALTLLLLGFRQWPLP 124

Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
            P+ G  ++ +    +  IPYGIA+++G L  YP +   K   +G
Sbjct: 125 YPLAGQSWLLRLHAKETGIPYGIALAIGALAVYPQTEWIKAVDLG 169


>gi|153008057|ref|YP_001369272.1| peptidase A24A prepilin type IV [Ochrobactrum anthropi ATCC 49188]
 gi|151559945|gb|ABS13443.1| peptidase A24A prepilin type IV [Ochrobactrum anthropi ATCC 49188]
          Length = 174

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 1/162 (0%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M  +A+  I    +V A ++DL S  I NRVSI +   F+L A   G+       HL VG
Sbjct: 1   MTAAAMTAIFALAMVTAMITDLTSMTIRNRVSIGLTLGFVLLAPFCGISLADYGWHLAVG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IV II F  F    MGGGD KL+ +TA+WFG   S + ++  V+ILGG+L++ I+  RM
Sbjct: 61  GIVLIITFSLFCLRAMGGGDAKLIAATALWFGPNASLMDYIVMVSILGGVLTLTIILYRM 120

Query: 126 ITNHIPIFG-MFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
           I   +      F+         IPYGIA+   GL ++P S +
Sbjct: 121 IPRPLLADRYAFLGTLARKDVGIPYGIALGAAGLWTFPLSPV 162


>gi|239833239|ref|ZP_04681568.1| peptidase A24A prepilin type IV [Ochrobactrum intermedium LMG 3301]
 gi|239825506|gb|EEQ97074.1| peptidase A24A prepilin type IV [Ochrobactrum intermedium LMG 3301]
          Length = 187

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 84/154 (54%), Gaps = 1/154 (0%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           I    +V A ++DL S  I NRVSI +   FLL A L G+       HL VG I  II F
Sbjct: 22  IFALAMVTAMVTDLTSMTIRNRVSIGLTLGFLLLAPLCGISLSDFGWHLAVGGIALIITF 81

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             F    MGGGD KL+ +TA+W+G  PS + +L  V+ILGG+L++ I+  RM+   +   
Sbjct: 82  ALFCLRAMGGGDAKLIAATALWYGPDPSLMDYLVMVSILGGVLTLTIILYRMVPRPLLAD 141

Query: 134 G-MFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
              F+         IPYGIA+   GL ++P + +
Sbjct: 142 RFAFMGTLARKDVGIPYGIALGAAGLWTFPLTPV 175


>gi|90419762|ref|ZP_01227671.1| putative peptidase A24A, prepilin type IV [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335803|gb|EAS49551.1| putative peptidase A24A, prepilin type IV [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 170

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 1/168 (0%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M   A+ +I PF +++AA SDL S  I NRVSI++  +F + A+  GM    I  HL +G
Sbjct: 1   MTALAILVIFPFAMLYAAASDLVSMTIANRVSILLALAFPVVAYAAGMAPGAIGAHLGIG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           L+   +CF  FA   MGGGD KLL +TAVWFG TP  L ++ F +I GG+L++ +LT+R 
Sbjct: 61  LVCLTVCFGMFAAGWMGGGDAKLLAATAVWFGPTPMLLEYILFASIYGGLLTIGLLTIRA 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
               +     F+ +    +  IPYGIA+ + GL  Y  S    +A   
Sbjct: 121 FLQPVTGVA-FIDRLLERETGIPYGIALGLAGLTVYSGSVWIDIAARS 167


>gi|316933041|ref|YP_004108023.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris DX-1]
 gi|315600755|gb|ADU43290.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris DX-1]
          Length = 174

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
            P  +VFAA SDL +  I NRVS+++L  FL+ A + GM   +  +H+  G  V  + F 
Sbjct: 11  FPALMVFAATSDLLTMTISNRVSLLLLAGFLVLAPMSGMSLAVFGMHVGAGAAVLAVAFG 70

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
            FA   +GGGD K+  + A+WFG+    L FL + ++ GG L++ +L+ R         G
Sbjct: 71  CFAMGWIGGGDAKVAAAAALWFGFGD-LLDFLLYASLFGGALTLLLLSFRQWPLPYVFAG 129

Query: 135 M-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
             ++ +    +  IPYGIA++MG L  YP +   
Sbjct: 130 QTWLLRLHAQETGIPYGIALAMGALAVYPQTDWI 163


>gi|86355862|ref|YP_467754.1| prepilin peptidase protein [Rhizobium etli CFN 42]
 gi|86279964|gb|ABC89027.1| prepilin peptidase protein [Rhizobium etli CFN 42]
          Length = 170

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 87/170 (51%), Positives = 114/170 (67%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ +AVF+I P CL  AA SDLF+  IPNR+S++++ SFL  A   G+  + I  HL  G
Sbjct: 1   MIAAAVFVILPLCLAMAAFSDLFTMTIPNRISLILVVSFLALAPFFGLGLQAIGTHLAAG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            IVF  CF  FAFN+MGGGD KLLT+TA+WFG   S L  +  VAI+GG+L++ IL VR 
Sbjct: 61  AIVFAACFALFAFNVMGGGDAKLLTATALWFGLNESLLFLMTDVAIIGGLLTLLILLVRG 120

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
            +N I   G+ VP S L+  KIPYGIAI++GG +++P S LF  AL  L 
Sbjct: 121 QSNTILAIGLPVPNSLLLAKKIPYGIAIAIGGFMAFPSSPLFIAALESLK 170


>gi|319785610|ref|YP_004145086.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171498|gb|ADV15036.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 172

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/172 (37%), Positives = 99/172 (57%), Gaps = 1/172 (0%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ + +F++ PFC++FAA+SD+ S  I NRV ++++  F L A L GMD+     H   G
Sbjct: 1   MLEALIFVVFPFCMLFAAISDMLSMTIANRVPVLLVVVFALVAPLTGMDWAAYGGHFAAG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +V  + F  FA   MGGGD KLL +TA+W G   + + +L    I+GG+L++ I+  R 
Sbjct: 61  ALVLAVTFGLFAIGGMGGGDAKLLAATAMWMGLNVNLVEYLVASTIIGGLLTLAIILYRK 120

Query: 126 ITNHIPIFGMFVPKSFLMK-NKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
                        + F  +   +PYG+A+ +GGL++YPDS L   AL  L+A
Sbjct: 121 SMLAAVTGQNPFLRHFADEAKGVPYGVALGLGGLLTYPDSPLMIWALARLAA 172


>gi|315497467|ref|YP_004086271.1| peptidase a24a prepilin type IV [Asticcacaulis excentricus CB 48]
 gi|315415479|gb|ADU12120.1| peptidase A24A prepilin type IV [Asticcacaulis excentricus CB 48]
          Length = 171

 Score =  117 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 3/166 (1%)

Query: 6   MVFSAVF-LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
           M+  A+F L+ P CLV+AA+SDL S  IPNR+S+++ G F   A L+G+     A+H+ +
Sbjct: 1   MLIPALFCLVYPACLVWAAVSDLRSMTIPNRLSLILAGVFFPAAVLMGLTPVGFAIHVGI 60

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           GL + +I F  FAF ++GGGD KLL +TA+WF  T   L+FL + A++GG  ++ +L  R
Sbjct: 61  GLGILVIGFAAFAFKVLGGGDAKLLAATALWFH-TDGVLAFLVYTALVGGGFTLLLLLAR 119

Query: 125 MITN-HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
                ++P    ++      K  IPYG+AI  GGL++ P S L+ +
Sbjct: 120 QTLQIYLPTLPQWLQTLLKPKGDIPYGVAICAGGLLAIPYSDLWPL 165


>gi|260461951|ref|ZP_05810196.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum
           WSM2075]
 gi|259032198|gb|EEW33464.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum
           WSM2075]
          Length = 172

 Score =  116 bits (292), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 1/172 (0%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+ + +F++ PFC++FAA+SD+ S  I NRVS++++  F L A L GM++     H   G
Sbjct: 1   MLEALIFVVFPFCMLFAAISDMLSMTIANRVSVLLVIVFALVAPLTGMEWATYGWHFAAG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            ++  + F  FA   MGGGD KLL +TAVW G     + +L     +GG+L++ I+  R 
Sbjct: 61  ALILAVTFGLFAMGGMGGGDAKLLAATAVWMGLNVHLVEYLVVSTFIGGLLTLAIVLYRK 120

Query: 126 ITNHIPIFGMFVPKSFLMKN-KIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
               +        + F  ++  +PYGIA+ +GGL++YPDS L   AL  L++
Sbjct: 121 SPLAVITGRNPFLRHFAEESAGVPYGIALGLGGLLTYPDSPLMVWALARLAS 172


>gi|163757625|ref|ZP_02164714.1| putative pilus assembly transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162285127|gb|EDQ35409.1| putative pilus assembly transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 147

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/146 (40%), Positives = 87/146 (59%), Gaps = 1/146 (0%)

Query: 30  AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLL 89
             IPNRVSIV+  SF + A L GMD       ++  LIVF +CF  FA N+MGGGD K+L
Sbjct: 1   MKIPNRVSIVLGLSFFVVAPLSGMDLATFGWSIVAALIVFAVCFALFAVNVMGGGDAKIL 60

Query: 90  TSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM-KNKIP 148
           ++ A+W+G++   + FL F  I GG+L++ +L +R   N + +  + +P  F   +  IP
Sbjct: 61  SAAALWYGFSSDLVVFLGFTGIYGGLLALVVLMLRANQNILLVSPVPIPMHFFKDRAGIP 120

Query: 149 YGIAISMGGLISYPDSYLFKVALMGL 174
           YG+AI      +YPDS +F  A+  L
Sbjct: 121 YGVAIGAAAFSTYPDSRIFIEAIGRL 146


>gi|13474658|ref|NP_106227.1| type IV prepilin peptidase, cpaA [Mesorhizobium loti MAFF303099]
 gi|14025413|dbj|BAB52013.1| type IV prepilin peptidase; CpaA [Mesorhizobium loti MAFF303099]
          Length = 175

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 102/174 (58%), Gaps = 1/174 (0%)

Query: 4   SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
           + M+ + +F++ PFC++FAA+SD+ S  I NRVS++++  F L A L GM++     H  
Sbjct: 2   APMLEALIFVVFPFCMLFAAISDMLSMTIANRVSVLLVVVFALVAPLTGMEWAAYGWHFA 61

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
            G +V  + F  FA   MGGGD KLL +TAVW G     + +L    ++GG+L++ IL  
Sbjct: 62  AGALVLAVTFGLFAMGGMGGGDAKLLAATAVWMGLNIHLVEYLVVSTLIGGLLTIAILLY 121

Query: 124 RMITNHIPIFGMFVPKSFLMKN-KIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
           R     +        + F  ++  IPYGIA+ +GGL++YPDS L   AL  L++
Sbjct: 122 RKSPLAVITGRNPFLRHFAEESVGIPYGIALGLGGLLTYPDSPLMVWALASLAS 175


>gi|220922777|ref|YP_002498079.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
           2060]
 gi|219947384|gb|ACL57776.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
           2060]
          Length = 168

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 2/169 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M    + ++ PF + +AA SDL +  IPN +S+V++  F L A  LG+ +  + LHL  G
Sbjct: 1   MASVILLVVFPFLMAYAAASDLLTMTIPNALSLVLVAVFPLAALALGLSWSEVGLHLGAG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +   + F  F F ++GGGD KL  +TA+W G+ P    ++   ++ GG+L++ IL VR+
Sbjct: 61  GLTLALTFTLFCFGLIGGGDAKLAAATALWLGFEP-LADYVLAASLAGGVLTLLILQVRI 119

Query: 126 IT-NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
                I +   +  +    +  +PYGIA++   L+  P + ++   L  
Sbjct: 120 HPLPRIAVSWPWALRLHDRRTGVPYGIALAFAALVVCPAAPMWHPLLSA 168


>gi|304392386|ref|ZP_07374327.1| peptidase A24A prepilin type IV [Ahrensia sp. R2A130]
 gi|303295490|gb|EFL89849.1| peptidase A24A prepilin type IV [Ahrensia sp. R2A130]
          Length = 181

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 4/171 (2%)

Query: 4   SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
             +V  AV  + P C+++A  SDL S  I N    V++  F + A L GM ++ IA+H  
Sbjct: 8   DHIVAFAVLTVFPLCVIYATFSDLLSMKISNLTCGVLVLGFFILAPLSGMGWQAIAIHSS 67

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
           V +   ++   FF+  +MGGGD KL+ + ++W G     L ++   ++LG ++++ I+ +
Sbjct: 68  VAVAALVMGMSFFSMGVMGGGDAKLIAAVSLWLGLG-LTLPYILAASLLGAVVTLVIVGL 126

Query: 124 RMITNHIPIF---GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
           R     +P        + K    K  IPYG+A+    L+ +  S     A 
Sbjct: 127 RKAKPRLPQAFRDWRVMAKVLDRKEGIPYGLALGPAALVVFTISPWVTSAA 177


>gi|300021852|ref|YP_003754463.1| peptidase A24A prepilin type IV [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523673|gb|ADJ22142.1| peptidase A24A prepilin type IV [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 169

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 91/161 (56%), Gaps = 2/161 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            +  I P  + FAA +DLF+  IPN +S+ ++G F+  A L  M  E   +H++  L V 
Sbjct: 7   LLVAIFPIAMAFAAANDLFTMRIPNVISLALIGGFVALAVLTRMPLETFGMHVVCALGVL 66

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++ F  FAFN++GGGD KL+ + A+W G +   L F+ F  + GG+L + IL+ R +   
Sbjct: 67  LLTFALFAFNLLGGGDAKLMAAGALWMG-SAQILPFIAFTTMFGGVLCLLILSYRRMVPA 125

Query: 130 -IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
            +     +  +       +PYGIAI+  GL+ +P + LF++
Sbjct: 126 DLLPLPGWAQRLHTAGGPVPYGIAIAASGLMVFPTTELFRM 166


>gi|188581658|ref|YP_001925103.1| peptidase A24A prepilin type IV [Methylobacterium populi BJ001]
 gi|179345156|gb|ACB80568.1| peptidase A24A prepilin type IV [Methylobacterium populi BJ001]
          Length = 172

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++ PF + +AA SDL +  I NRV+ ++   F+L A   GM +  ++ HL  G +  +I 
Sbjct: 12  VVFPFLMAYAAASDLLTMRISNRVTSLVSLGFVLYAVASGMAWADLSRHLAAGALTLLIT 71

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
           F FFA   +GGGD KL  STA+W G     L +L   ++LGG L++ IL+ R      P+
Sbjct: 72  FFFFARGWIGGGDAKLAASTALWIGLG-HLLDYLLMASLLGGPLTLTILSARTYPLPKPV 130

Query: 133 FGM-FVPKSFLMKNKIPYGIAISMGGLISYPDS 164
             + F       +  IPYGIA++   L+  P++
Sbjct: 131 LKLPFAVHLHDARTGIPYGIALAAAALLVLPNA 163


>gi|163851901|ref|YP_001639944.1| peptidase A24A prepilin type IV [Methylobacterium extorquens PA1]
 gi|163663506|gb|ABY30873.1| peptidase A24A prepilin type IV [Methylobacterium extorquens PA1]
          Length = 169

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 2/153 (1%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++ PF + +AA SDL +  I NRV+ ++   FLL A + GMD+  ++ HL  G +  +I 
Sbjct: 9   VVFPFLMAYAAASDLLTMRISNRVTGLVFVGFLLYAMVSGMDWSDLSRHLAAGSLTLVIT 68

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
           F  FA   +GGGD KL  STA+W G   +   +L   +ILG  L++ I++ R        
Sbjct: 69  FALFARGWIGGGDAKLAASTALWIGLA-NLPEYLILASILGAPLTLSIVSARKYPLPKLA 127

Query: 133 FGM-FVPKSFLMKNKIPYGIAISMGGLISYPDS 164
               F       K  +PYGIA++   L+  P+S
Sbjct: 128 LKFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 160


>gi|170740623|ref|YP_001769278.1| peptidase A24A prepilin type IV [Methylobacterium sp. 4-46]
 gi|168194897|gb|ACA16844.1| peptidase A24A prepilin type IV [Methylobacterium sp. 4-46]
          Length = 168

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 2/167 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M    + ++ PF + +AA SDL +  IPN +S+ +L  F + A LLG+ +     HL  G
Sbjct: 1   MASMFLLVVFPFLMAYAAASDLLTMTIPNALSLALLAVFPVAALLLGLSWGEFGEHLAAG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            I   + F  F F ++GGGD KL  +TA+W G+ P    ++   ++ GG+L++ IL  R 
Sbjct: 61  GITLAVTFALFCFGLIGGGDAKLAAATALWLGFEP-LADYVLAASLAGGVLTLLILQARA 119

Query: 126 IT-NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
                I     +  +    +  +PYGIA++   L+  P + L++  L
Sbjct: 120 YPLPRIAASWPWALRLHDTRTGVPYGIALAAAALVVCPSAPLWRALL 166


>gi|170749894|ref|YP_001756154.1| peptidase A24A prepilin type IV [Methylobacterium radiotolerans JCM
           2831]
 gi|170656416|gb|ACB25471.1| peptidase A24A prepilin type IV [Methylobacterium radiotolerans JCM
           2831]
          Length = 187

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 2/164 (1%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           + ++ PF + +AA SDL + +IPNR+S+ +L  F L A    M +  I  H   G +V +
Sbjct: 25  LLILFPFLMAYAAASDLLTMLIPNRISLALLAGFALLALTSAMSWTEIGFHCAAGAVVLL 84

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           + F  FAF I+GGGD KL  +TA+W G+      +L   ++ GG L++ IL  R     +
Sbjct: 85  VTFTLFAFGIIGGGDAKLAAATALWLGFD-GLGDYLLVASVFGGALTLAILLARTHPLPV 143

Query: 131 PIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
            I  M F       K  IPYGIA++   L+  P++ ++  AL G
Sbjct: 144 RIARMPFALHLHDAKTGIPYGIALAAAALLVLPETEVWTRALAG 187


>gi|240139024|ref|YP_002963499.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens AM1]
 gi|240008996|gb|ACS40222.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens AM1]
          Length = 172

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 2/152 (1%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           + PF + +AA SDL +  I NRV+ ++   FLL A + GMD+  ++ HL  G +  +I F
Sbjct: 13  VFPFLMAYAAASDLLTMRISNRVTGLVFVGFLLYAMVSGMDWSDLSRHLAAGSLTLVITF 72

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             FA   +GGGD KL  STA+W G   +   +L   +ILG  L++ I++ R         
Sbjct: 73  ALFARGWIGGGDAKLAASTALWIGLA-NLPEYLILASILGAPLTLSIVSARKYPLPKLAL 131

Query: 134 GM-FVPKSFLMKNKIPYGIAISMGGLISYPDS 164
              F       K  +PYGIA++   L+  P+S
Sbjct: 132 KFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 163


>gi|220922526|ref|YP_002497828.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
           2060]
 gi|219947133|gb|ACL57525.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
           2060]
          Length = 168

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 1/158 (0%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            + L+ P  + +AA SDL +  IPN +S+ ++  F   A L+G+D+  +A H   G  + 
Sbjct: 3   LLSLVFPAIMAYAAASDLLTMRIPNFISVALIVIFFGLAILVGVDWSTVAWHAAAGATML 62

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT-N 128
           ++CF  +A   +GGGD KL  +T +W G+TP  L +L  V ++GG++ V  L++R     
Sbjct: 63  VVCFLMYALGWIGGGDAKLAAATVLWLGFTPVLLDYLLIVGLVGGMMGVLFLSIRRFPLP 122

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
              +   ++ +    K  +PYGIA++  GL  YPDS L
Sbjct: 123 AFALTWEWLVRLHDKKAGVPYGIALAAAGLAVYPDSLL 160


>gi|254561619|ref|YP_003068714.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens DM4]
 gi|254268897|emb|CAX24858.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens DM4]
          Length = 172

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 2/153 (1%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++ PF + +AA SDL +  I NRV+ ++   FLL A + GMD+  ++ HL  G +  +I 
Sbjct: 12  VVFPFLMAYAAASDLLTMRISNRVTGLVFVGFLLYALVSGMDWSDLSRHLAAGSLTLVIT 71

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
           F  FA   +GGGD KL  STA+W G   +   +L   +ILG  L++ I++ R        
Sbjct: 72  FALFARGWIGGGDAKLAASTALWIGLA-NLPEYLILASILGAPLTLSIVSARKYPLPKLA 130

Query: 133 FGM-FVPKSFLMKNKIPYGIAISMGGLISYPDS 164
               F       K  +PYGIA++   L+  P+S
Sbjct: 131 LKFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 163


>gi|114705459|ref|ZP_01438367.1| type IV prepilin peptidase, cpaA [Fulvimarina pelagi HTCC2506]
 gi|114540244|gb|EAU43364.1| type IV prepilin peptidase, cpaA [Fulvimarina pelagi HTCC2506]
          Length = 169

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 2/166 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M +  +  + P C++FAA+SD+ +  IPNR+ +++  +F + A L  M    IA+HL  G
Sbjct: 1   MSYLFLTTVFPLCMIFAAVSDIMTMTIPNRLCLLLALAFPVAALLSNMSTSDIAIHLGFG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           L  F++ F  FAF ++GGGD KLL +TA W G   + L +L     LGG++++ I+  R 
Sbjct: 61  LAAFLLGFAMFAFGLVGGGDAKLLAATAFWIGPAGA-LPYLLVATGLGGLMAIGIIYARN 119

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
           +   I    +F  +       +PYG+A+ + GL SY DS     A+
Sbjct: 120 MAVPI-TGYVFADRLLSQNTGVPYGVALGIAGLYSYADSVYLTAAI 164


>gi|329847251|ref|ZP_08262279.1| type IV leader peptidase family protein [Asticcacaulis biprosthecum
           C19]
 gi|328842314|gb|EGF91883.1| type IV leader peptidase family protein [Asticcacaulis biprosthecum
           C19]
          Length = 172

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L  P  L++AA+SDL    I NR+++++ G+F   A LLG+    I +H  V     ++ 
Sbjct: 9   LTYPAYLLWAAVSDLVRMTISNRLNLILAGAFFPAALLLGLSLGDIGIHTAVAAGGLVLG 68

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI-P 131
              FA   MGGGD KL+ +TA+W G    F++ LF+ A+ GG L++ I+  R     + P
Sbjct: 69  MVLFALRFMGGGDAKLIAATALWLGLD-GFIALLFYTALAGGALTLGIVIARKFFWALAP 127

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
               ++ +    K  IPYGIAI  GGL++ P   L+ 
Sbjct: 128 KLPKWLGQHLEAKTGIPYGIAICAGGLLAIPHGDLWA 164


>gi|167648154|ref|YP_001685817.1| peptidase A24A prepilin type IV [Caulobacter sp. K31]
 gi|167350584|gb|ABZ73319.1| peptidase A24A prepilin type IV [Caulobacter sp. K31]
          Length = 170

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 86/159 (54%), Gaps = 3/159 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           A+ L+ P  +V AAL D+ S  IPN +S+ ++ +F+  A + G     I L L  GL   
Sbjct: 7   ALLLVFPALVVIAALKDVTSFTIPNWISLALIAAFVPAALVSGASLSSIGLCLATGLGAL 66

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR--MIT 127
           ++    FA   +GGGD KL  ++A+W GW P+ L F+    + GG L++ IL++R     
Sbjct: 67  VVGMGMFAAGWIGGGDAKLFAASALWLGW-PATLPFMLTTGLAGGALTLGILSLRSGWFE 125

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
             +     +V K       IPYG+AI++G L+++P   L
Sbjct: 126 PILAGSPPWVRKLGANGGDIPYGVAIAVGALVTFPQGAL 164


>gi|254419519|ref|ZP_05033243.1| peptidase, A24 (type IV prepilin peptidase) family [Brevundimonas
           sp. BAL3]
 gi|196185696|gb|EDX80672.1| peptidase, A24 (type IV prepilin peptidase) family [Brevundimonas
           sp. BAL3]
          Length = 173

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
             + P  ++   L DL +  IPN +S+V+L +F   A L+G+    +A+H+ VG    I+
Sbjct: 9   LAVFPILMIATGLHDLTTMRIPNWISLVLLATFFPAALLVGLSPVEVAIHVGVGFAALIV 68

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
               FA   +GGGD K L +  +W G T      L + AI+GG   + +L VR     + 
Sbjct: 69  GMIMFALRWIGGGDAKALAAACLWMGLT-GLAPLLLWTAIVGGGFCLLLLLVRQYYPMVA 127

Query: 132 IFGM---FVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
                  ++ +    K  IPYG+AI++G LI++P+  L 
Sbjct: 128 PAAFRIGWLARLMEPKGDIPYGVAIAIGALIAFPEGDLV 166


>gi|154250687|ref|YP_001411511.1| peptidase A24A prepilin type IV [Parvibaculum lavamentivorans DS-1]
 gi|154154637|gb|ABS61854.1| peptidase A24A prepilin type IV [Parvibaculum lavamentivorans DS-1]
          Length = 187

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 1/169 (0%)

Query: 3   ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
            S ++   + ++ P  ++F AL DL +  IPN +SI ++  F L    +G+  + IALH+
Sbjct: 17  ASSVMNMLLLVVFPLAMIFGALWDLTTMTIPNLLSIALVAMFALLVPFVGLALQDIALHV 76

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
             GL++  +    FA   +GGGD K +++ A+W GW+   L +L   +I GG+L++ +L 
Sbjct: 77  AAGLVMLALGMGLFALGWIGGGDAKFVSAIALWIGWSE-LLGYLLLASIFGGVLTLLLLG 135

Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
            R +     +   ++ +    K+ IPYG+A++   L+ +  +  FK A 
Sbjct: 136 FRKMPLPSFMHREWLLRLHDRKSGIPYGVALAAAALVMFERTVWFKFAA 184


>gi|295690800|ref|YP_003594493.1| peptidase A24A prepilin type IV [Caulobacter segnis ATCC 21756]
 gi|295432703|gb|ADG11875.1| peptidase A24A prepilin type IV [Caulobacter segnis ATCC 21756]
          Length = 170

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 3/167 (1%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +  ++ ++ P   +  AL DL S  IPN VS+ ++ +F+  A + G+    I + L VGL
Sbjct: 4   LQISLLMVFPALAIVGALKDLTSYTIPNWVSLALIAAFVPAALISGVSLPQIGVCLAVGL 63

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
              ++    FA   +GGGD KLL + A+W GW P+ L FL +  + GG L+  IL +R  
Sbjct: 64  GALVLGMGMFAAGWIGGGDGKLLAACALWMGW-PAVLPFLLYTGLAGGALTFAILALRSG 122

Query: 127 TNHIPIFG--MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
                + G   +V +       +PYG+AI+ G LI++P + L +  L
Sbjct: 123 WVAPMVAGGPAWVRRLGQSGGDLPYGVAIAAGALIAFPKALLAQGVL 169


>gi|220923696|ref|YP_002498998.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
           2060]
 gi|219948303|gb|ACL58695.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS
           2060]
          Length = 171

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 2/169 (1%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M  S +      ++  F +++A ++DL +  I N + +V+L  + + A L G     I  
Sbjct: 1   MTVSDLAAPCGMILFAFTVIYAGITDLTTMKIRNGLVLVLLLGYGILAPLAGFSLPQIGW 60

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
              +   V +  F FFAF  +GGGD K   +T +W G   S + +L + A+LGG+ ++ +
Sbjct: 61  SAALSFGVLLAAFIFFAFGWIGGGDAKFAAATVLWLGIDHSPV-YLVYTALLGGLFTLLL 119

Query: 121 LTVRMITNHIPIFG-MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
           L  R       + G  ++ +     + +PYG+A+++  L+ +P ++   
Sbjct: 120 LQFRTRALPAFLNGSTWLVRLHSPTSGVPYGVAMALAALVVFPQTHWMT 168


>gi|294012228|ref|YP_003545688.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum
           UT26S]
 gi|292675558|dbj|BAI97076.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum
           UT26S]
          Length = 176

 Score = 99.6 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 3/157 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+   V L   F LV AA+ D+    I N   ++++G +       G +   I  +  V 
Sbjct: 1   MMKDLVLLAVSFVLVAAAVEDMARLRISNIFPLLVIGLYAAWVAAAGWE-NDIWRNGTVF 59

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           L +F +    FA   MGGGDVKL+++ A+WF W  + + +L +V + GG+L++ ++  R 
Sbjct: 60  LGMFALGCGLFAMRAMGGGDVKLMSACALWFDWAGA-VPWLVYVTVGGGVLALVLMAGRR 118

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
           +       G  +   F  K  IPYG+AI++G +++  
Sbjct: 119 LVPQSWREGSSIA-LFDKKGPIPYGVAIALGTIMALH 154


>gi|302381758|ref|YP_003817581.1| peptidase A24A prepilin type IV [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192386|gb|ADK99957.1| peptidase A24A prepilin type IV [Brevundimonas subvibrioides ATCC
           15264]
          Length = 170

 Score = 99.6 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 2/156 (1%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           ++ AALSDL +  IPN +S +++  F   AF +G+    + L++ V +   ++    FA 
Sbjct: 16  VIVAALSDLTTMKIPNWISGLLIVGFFPAAFAVGLSPAEVGLNVAVAVGALLVGMGLFAG 75

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM-ITNHIPIFGMFV 137
            I+GGGD K++ +T +W G+  + + FL +  + GG+L + ++  R  +         +V
Sbjct: 76  RIIGGGDAKVMAATCLWLGFGGAGM-FLLYTGLFGGLLCLALIAARKSVVLPAHATPGWV 134

Query: 138 PKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
                 +  +PYG+AI  G L ++P S L      G
Sbjct: 135 ATLMEPRGDLPYGVAICAGALAAFPSSPLLLTYAAG 170


>gi|254293212|ref|YP_003059235.1| peptidase A24A prepilin type IV [Hirschia baltica ATCC 49814]
 gi|254041743|gb|ACT58538.1| peptidase A24A prepilin type IV [Hirschia baltica ATCC 49814]
          Length = 169

 Score = 98.8 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 4/171 (2%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+      I    LV+AA  D+F   IPN VSI++   FL TA+   +  E    H LVG
Sbjct: 1   MIIPISAGIFAALLVYAACHDVFDRTIPNWVSILIAILFLPTAYFAELSLEQFGWHALVG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            I  II    F   I GGGD KL+ + ++W G      +FL   AI GG++++ ++ +R 
Sbjct: 61  AIALIIGIALFYLRIWGGGDAKLVAAVSLWMGLQAEP-TFLAAFAIAGGLIALPLIIIRR 119

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
           +               L   K+PYG+AI+ G   + P S++   A+  + A
Sbjct: 120 MKFE---PKNDRLAKMLDTKKVPYGVAIAAGAFWAAPQSFVLMQAINSIGA 167


>gi|304320645|ref|YP_003854288.1| pilus assembly protein prepilin peptidase subunit [Parvularcula
           bermudensis HTCC2503]
 gi|303299547|gb|ADM09146.1| pilus assembly protein prepilin peptidase subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 164

 Score = 98.8 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 2/161 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M  S + L+ P  L  AA+ DL S  IPNRV+  +  ++ L A  +G+ + +    +   
Sbjct: 1   MFSSVISLVYPALLSVAAVYDLTSFKIPNRVTAALAVAWPLCALAVGIPFTMALSSVAFA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
             +    F  FA   +GGGDVKLL +T +W G   + L F+ +  I GG L+  +L+ R 
Sbjct: 61  FGILAAGFALFAIGKLGGGDVKLLAATTLWVGPALA-LEFVLWTMIFGGGLAFALLSFRR 119

Query: 126 ITNHIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
           +   + +    ++   +  K  +PYG+AI+  GL+ +  + 
Sbjct: 120 LPLPVNVMSTGWLFDLYNRKKDMPYGVAIAASGLMLWSKTP 160


>gi|150377242|ref|YP_001313837.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419]
 gi|150031789|gb|ABR63904.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419]
          Length = 170

 Score = 96.9 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 78/158 (49%), Gaps = 2/158 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
             F +    + +A + D+ +  I NR+ + ++ +F + A  +G+ ++ I   ++V  +V 
Sbjct: 9   LAFFLFAGVMTYAGIRDVATMTISNRLVVFLVIAFAVLAPAVGLSFDTITSSIVVASVVL 68

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
              F  FA   +GGGD KLL    +W G     L F+ + +++G  L++ +L +R     
Sbjct: 69  ACTFVLFAAGWIGGGDAKLLPVAVLWLG-ADLALPFVLYTSVIGAALTLGLLQLRRAPLP 127

Query: 130 IPIFG-MFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
           + +    +  +    +  IPYG A++   L+  P+S+ 
Sbjct: 128 LVLKKNAWSKRLLDRETGIPYGAAMAPAALLLLPESHW 165


>gi|218530652|ref|YP_002421468.1| peptidase A24A prepilin type IV [Methylobacterium chloromethanicum
           CM4]
 gi|218522955|gb|ACK83540.1| peptidase A24A prepilin type IV [Methylobacterium chloromethanicum
           CM4]
          Length = 165

 Score = 96.5 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 2/151 (1%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
            PF + +AA+SDL +  I NRV+ ++L +F+L A   GM    +ALH+  G +V    F 
Sbjct: 14  FPFLMAYAAVSDLLTMRISNRVTSLVLFTFVLYALADGMMLAELALHIAAGCLVLAAAFV 73

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
            FA   +GGGD KL     +W G       +L   ++ GG+L++ IL  R     +    
Sbjct: 74  MFARGWIGGGDAKLAAGATLWLGI-EYVAEYLIAASVFGGVLTLVILFARAYPLPMATLR 132

Query: 135 M-FVPKSFLMKNKIPYGIAISMGGLISYPDS 164
           + F       +  IPYGIA++   L   P +
Sbjct: 133 LPFAVNLHDSRTGIPYGIALAAAALTVLPHA 163


>gi|307294435|ref|ZP_07574279.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1]
 gi|306880586|gb|EFN11803.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1]
          Length = 176

 Score = 96.5 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 3/156 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+   V L     L+ AA+ D+    I N   ++++G +       G +   I  +  V 
Sbjct: 1   MMKDVVLLAVSLVLIAAAVEDMARLRISNIFPLLVIGLYAAWVAAAGWE-NDIWRNGTVF 59

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           L +F +    FA   MGGGD+KL+++ A+WF W    + +L +V + GG+L++ ++  R 
Sbjct: 60  LGMFALGCGLFALRWMGGGDIKLMSTCALWFDW-QGVVPWLVYVTVGGGVLALVLMIGRR 118

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
           +       G  +   F  K  IPYG+AI++G +++ 
Sbjct: 119 LVPQAVREGSSIA-LFDKKGPIPYGVAIALGTIMAL 153


>gi|16127177|ref|NP_421741.1| pilus assembly protein CpaA [Caulobacter crescentus CB15]
 gi|221235978|ref|YP_002518415.1| pilus assembly prepilin peptidase CpaA [Caulobacter crescentus
           NA1000]
 gi|7208423|gb|AAF40190.1|AF229646_2 CpaA [Caulobacter crescentus CB15]
 gi|13424575|gb|AAK24909.1| pilus assembly protein CpaA [Caulobacter crescentus CB15]
 gi|220965151|gb|ACL96507.1| pilus assembly prepilin peptidase CpaA [Caulobacter crescentus
           NA1000]
          Length = 170

 Score = 96.1 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           + LI P   +  AL DL S  IPN +S+ ++ +F+  A + G     I L L VGL   +
Sbjct: 8   LLLIFPALAIVGALKDLTSYTIPNWISLALIAAFVPAALVSGAPLSQIGLCLAVGLGALV 67

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR--MITN 128
           +    FA   +GGGD KL    A+W GW P+ L+F+ +  + GG+L+  IL +R   +  
Sbjct: 68  LGMGMFAAGWIGGGDGKLFAVCALWLGW-PAALTFMLYTGLAGGVLTFAILGLRSGWLAP 126

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
            +     ++ K       +PYG+AI++G L ++P   L
Sbjct: 127 AVAGGPAWLRKLGTTGGDLPYGVAIAVGALAAFPQGAL 164


>gi|227818613|ref|YP_002822584.1| CpaA2 pilus assembly protein [Sinorhizobium fredii NGR234]
 gi|227337612|gb|ACP21831.1| CpaA2 pilus assembly protein [Sinorhizobium fredii NGR234]
          Length = 170

 Score = 95.3 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 2/163 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
             FL+    + +A + D+ +  I NR+   +L +F + A L G+D  +I   +LV   V 
Sbjct: 9   LAFLLFAGTMTYAGIKDVMTMTISNRLVGFLLVAFAVLAPLAGVDLPMIWSSILVASAVL 68

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
              F FFA   +GGGD KLL    +W G   + L F+   ++LG +L++ ++  R +   
Sbjct: 69  AFTFTFFALGWIGGGDAKLLPVAVLWLGAGLA-LPFVVCASVLGAVLTLSLMQFRKMPLP 127

Query: 130 IPI-FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
           + +    +  +    +  IPYG A++   L+  P+S+ F   L
Sbjct: 128 VLLQKRAWSSRLHTPQTGIPYGAAMAPAALLLLPESHWFAALL 170


>gi|16263310|ref|NP_436103.1| CpaA2 pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|14523989|gb|AAK65515.1| CpaA2 prepilin peptidase [Sinorhizobium meliloti 1021]
          Length = 170

 Score = 94.2 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 2/162 (1%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
            FL+    + +A + D+ +  I NRV + ++ +F + A   G++   +   ++V   V  
Sbjct: 10  AFLLFAGAMTYAGIRDVATMTISNRVVVFLVIAFAILAPAAGLNLATVMSSVVVASAVLA 69

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
             F  FA   +GGGD KLL    +W G     L F+ + +++G  L+V +L +R +   +
Sbjct: 70  CTFVLFAAGWIGGGDAKLLPVAVLWLG-ADLALPFILYTSVIGAALTVGLLQLRRVPLPL 128

Query: 131 PIFG-MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
            +    +  +    +  IPYG A++   L+  P+S+   V L
Sbjct: 129 ALKKNAWAKRLLDRETGIPYGAAMAPAALLLLPESHWCSVLL 170


>gi|307304371|ref|ZP_07584122.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C]
 gi|306902573|gb|EFN33167.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C]
          Length = 170

 Score = 93.4 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 2/162 (1%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
            FL+    + +A + D+ +  I NR+ + ++ +F + A   G++   +   ++V   V  
Sbjct: 10  AFLLFAGAMTYAGIRDVATMTISNRLVVFLVIAFAILAPAAGLNLATVMSSVVVASAVLA 69

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
             F  FA   +GGGD KLL    +W G     L F+ + +++G  L+V +L +R +   +
Sbjct: 70  CTFVLFAAGWIGGGDAKLLPVAVLWLG-ADLALPFILYTSVIGAALTVGLLQLRRVPLPL 128

Query: 131 PIFG-MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
            +    +  +    +  IPYG A++   L+  P+S+   V L
Sbjct: 129 ALKKNAWAKRLLDRETGIPYGAAMAPAALLLLPESHWCSVLL 170


>gi|36958869|gb|AAQ87294.1| CpaA [Sinorhizobium fredii NGR234]
          Length = 194

 Score = 93.0 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 2/163 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
             FL+    + +A + D+ +  I NR+   +L +F + A L G+D  +I   +LV   V 
Sbjct: 33  LAFLLFAGTMTYAGIKDVMTMTISNRLVGFLLVAFAVLAPLAGVDLPMIWSSILVASAVL 92

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
              F FFA   +GGGD KLL    +W G     L F+   ++LG +L++ ++  R +   
Sbjct: 93  AFTFTFFALGWIGGGDAKLLPVAVLWLG-AGLALPFVVCASVLGAVLTLSLMQFRKMPLP 151

Query: 130 IPI-FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
           + +    +  +    +  IPYG A++   L+  P+S+ F   L
Sbjct: 152 VLLQKRAWSSRLHTPQTGIPYGAAMAPAALLLLPESHWFAALL 194


>gi|307318078|ref|ZP_07597514.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83]
 gi|306896119|gb|EFN26869.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83]
          Length = 170

 Score = 93.0 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 2/162 (1%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
            FL+    + +A + D+ +  I NR+ + ++ +F + A   G+    +   ++V   V  
Sbjct: 10  AFLLFAGAMTYAGIRDVATMTISNRLVVFLVIAFAILAPAAGLSLATVMSSVVVASAVLA 69

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
             F  FA   +GGGD KLL    +W G     L F+ + +++G  L+V +L +R +   +
Sbjct: 70  CTFVLFAAGWIGGGDAKLLPVAVLWLG-ADLALPFILYTSVIGAALTVGLLQLRRVPLPL 128

Query: 131 PIFG-MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171
            +    +  +    +  IPYG A++   L+  P+S+   V L
Sbjct: 129 ALKKNAWAKRLLDRETGIPYGAAMAPAALLLLPESHWCSVLL 170


>gi|83859355|ref|ZP_00952876.1| pilus assembly protein CpaA [Oceanicaulis alexandrii HTCC2633]
 gi|83852802|gb|EAP90655.1| pilus assembly protein CpaA [Oceanicaulis alexandrii HTCC2633]
          Length = 172

 Score = 92.6 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 2/170 (1%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M+   M+ +   L   F ++ A   D+ S  IPN V   ++  ++L A  LG+ +     
Sbjct: 1   MRAPAMISNIALLGFAFLMLCAVWYDVRSFTIPNWVPGALIAGWVLAAPFLGLSWMDAGF 60

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
            LL GL V  +    +A   +GGGDVKLL + A+WFGW P  L+F+      GG+L+V +
Sbjct: 61  SLLTGLGVLALGMALWAPGWVGGGDVKLLAAGALWFGW-PDGLAFVLIAVAAGGVLAVIL 119

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKN-KIPYGIAISMGGLISYPDSYLFKV 169
           + +R + + +PI    +  + L +   +PY IAI+ G L+  P + +F V
Sbjct: 120 VILRQMAHLLPISSDRLGSTALAQGAPVPYAIAIAAGALLVLPQAQMFAV 169


>gi|114568968|ref|YP_755648.1| peptidase A24A, prepilin type IV [Maricaulis maris MCS10]
 gi|114339430|gb|ABI64710.1| peptidase A24A, prepilin type IV [Maricaulis maris MCS10]
          Length = 165

 Score = 92.3 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 2/165 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+     L     ++ AA+ D    +IPN +  ++L +F + A   G+ +  +  HLL G
Sbjct: 1   MLIQITILALAGLMLAAAIFDATKFIIPNWLCGLVLLTFPIAAVAAGLGWAEVGNHLLGG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +  +I F  FA   +GGGD KL  + A+WFGW P FL+FL    + GG+L V +L +R 
Sbjct: 61  ALALVIGFALFAPGWVGGGDAKLFAAAALWFGW-PEFLAFLIHTVLAGGVLVVILLALRW 119

Query: 126 ITNHIPIFGMFVP-KSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
           +   +P+        +  +   +PYGIAI+ G   S P++  +  
Sbjct: 120 LAPRLPVLATRTEGTALAVNAPVPYGIAIAAGVFWSLPNTVFWAA 164


>gi|294012431|ref|YP_003545891.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum
           UT26S]
 gi|292675761|dbj|BAI97279.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum
           UT26S]
          Length = 157

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 14/151 (9%)

Query: 21  FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFN 79
            A+++DL S +I NR+++ + G   L     G+  +  +A+ LL GLIVF+     FA  
Sbjct: 20  VASVTDLRSRIISNRLNLTVAGLAPLWWLACGLPLWPGMAVQLLAGLIVFMAFAVLFALG 79

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
            MGGGDVKLL + A+WF W  + LS L  +A+LGGI+++  +    +T  +         
Sbjct: 80  CMGGGDVKLLGALALWFPW-QATLSMLMLMAVLGGIVTIVTVVHHRMTRRL--------- 129

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
               + +IPYGIAIS   L    + Y+ + A
Sbjct: 130 ---GQPQIPYGIAISFAALWLLGERYINQFA 157


>gi|23016177|ref|ZP_00055936.1| COG4960: Flp pilus assembly protein, protease CpaA
           [Magnetospirillum magnetotacticum MS-1]
          Length = 160

 Score = 86.5 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 9/146 (6%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    L+ AA  DL S  I NRV + +L +F+  A   G D      HL  G++ F+  
Sbjct: 11  MVFVAALLDAAWGDLRSLRIRNRVPLTILAAFVPWALCAGYDGGQWLAHLGTGVLCFVAA 70

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              F+  + GGGD KL+ +  +W G +     FL  +A+ GG++++  L VR      P 
Sbjct: 71  AILFSLGLWGGGDAKLVPAVVLWVGPSD-LPRFLLIMAVAGGLVALAALVVRRAEAGGPH 129

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGL 158
             M        +  IPYGIAI+ GGL
Sbjct: 130 PVM--------RGHIPYGIAIAAGGL 147


>gi|238762405|ref|ZP_04623376.1| hypothetical protein ykris0001_26500 [Yersinia kristensenii ATCC
           33638]
 gi|238699390|gb|EEP92136.1| hypothetical protein ykris0001_26500 [Yersinia kristensenii ATCC
           33638]
          Length = 127

 Score = 85.7 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 20/145 (13%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L+F   SD+    I N   I +  + ++            A+++++ L   +I +  F
Sbjct: 1   MQLLFVCYSDIRHRTISNNFIITIAINTVVLGLAT-----HQAVNIIIPLSALLIGYIIF 55

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
            F+++GGGDVKL+T        T S L+F+ + AI+GG+              + I GMF
Sbjct: 56  YFDLIGGGDVKLITVLLFALTTTQS-LNFILYTAIMGGV--------------VMIIGMF 100

Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161
           V +  + +  +PY +AIS G L+S+
Sbjct: 101 VNREDIKQRGVPYAVAISAGFLLSF 125


>gi|123443819|ref|YP_001007790.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090780|emb|CAL13662.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 140

 Score = 85.7 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 23/161 (14%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M    ++ SA+ ++    L+F   SD+    I N+  I +  + L   F +        +
Sbjct: 1   MDTLNILISALLMLQ---LLFVCYSDIRYRTISNKFIITIAINALALGFTM-----NHTV 52

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           ++++     +I +  F F+++GGGDVKL+T   +      S L F+ + A++GG+     
Sbjct: 53  NIVIPFSALLIGYSLFHFHLIGGGDVKLITVLLLALTTAKS-LDFILYTAMMGGV----- 106

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                    + I GM V +  + +  +PY +AIS G L+S+
Sbjct: 107 ---------VMIIGMLVNREDIQQRGVPYAVAISAGFLLSF 138


>gi|307293448|ref|ZP_07573294.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1]
 gi|306881514|gb|EFN12730.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1]
          Length = 150

 Score = 84.6 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 14/151 (9%)

Query: 21  FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFN 79
            A+++DL S +I NR+++ +     L     G+  +  +A+ LLV LIVFI+    FA  
Sbjct: 13  VASVTDLRSRIISNRLNLTVAALAPLWWLACGLPLWPGMAVQLLVALIVFIVFAALFALG 72

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
            MGGGDVKLL + A+WF W  + LS L  +A+LGGI+++  +    +T  +         
Sbjct: 73  CMGGGDVKLLGALALWFPW-QATLSMLMLMAVLGGIVTIVTVVHHRMTRRL--------- 122

Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
               + +IPYGIAIS   L    + Y+ + A
Sbjct: 123 ---GQPQIPYGIAISFAALWLLGERYINQFA 150


>gi|238750894|ref|ZP_04612391.1| hypothetical protein yrohd0001_16460 [Yersinia rohdei ATCC 43380]
 gi|238710808|gb|EEQ03029.1| hypothetical protein yrohd0001_16460 [Yersinia rohdei ATCC 43380]
          Length = 140

 Score = 82.6 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 20/157 (12%)

Query: 5   KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
            +  S +       L+    SD+   +I N+  + +  + L+ +F+         + +++
Sbjct: 2   NIFQSLLITFLVMQLLLICYSDIRYRIISNKFVVTIAITALVLSFIT-----YNTVSIVI 56

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            LI  +  +  F FN +GGGDVKL+    +      S L+F+ + AI+GG+         
Sbjct: 57  PLIALLTGYIIFHFNFIGGGDVKLIAVLLLTLNSGQS-LNFILYTAIMGGV--------- 106

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                + I GM + +  + +  +PY +AIS G L+S 
Sbjct: 107 -----VMIIGMLINRDDIQQRGVPYAVAISGGFLLSL 138


>gi|110632967|ref|YP_673175.1| peptidase A24A, prepilin type IV [Mesorhizobium sp. BNC1]
 gi|110283951|gb|ABG62010.1| peptidase A24A, prepilin type IV [Chelativorans sp. BNC1]
          Length = 170

 Score = 82.2 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 77/161 (47%), Gaps = 2/161 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
              L+    +++A + D+ +  I NR+ +++  ++++ A L G+  + +        ++ 
Sbjct: 9   VALLLFAGTMIYAGIKDVATMTITNRLVLLLAAAYVVLAPLAGLGVDEMLAAAAAASLML 68

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
              F  FA   +GGGD KL     +W G   + L ++F+V++ G +L++ ++  R     
Sbjct: 69  AGTFLLFALGWIGGGDAKLAAVAVLWLGADQT-LPYIFYVSVAGALLTLALIQFRRFPLP 127

Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
             +  + +  +       +PYG A++   L+  P++ LF  
Sbjct: 128 AVLQRLTWTERLHSAAAGVPYGAALAGAALLLLPETALFAA 168


>gi|238789146|ref|ZP_04632934.1| hypothetical protein yfred0001_29860 [Yersinia frederiksenii ATCC
           33641]
 gi|238722678|gb|EEQ14330.1| hypothetical protein yfred0001_29860 [Yersinia frederiksenii ATCC
           33641]
          Length = 127

 Score = 82.2 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 20/145 (13%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L+    SD+    + NR  I +     L    LG+      +++++ L   ++ +  F
Sbjct: 1   MQLLAICYSDILHRTVSNRFIITIT----LNTIALGLTIHN-TVNIIIPLCSLLVGYIIF 55

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
            FN +GGGDVKL+T+         S L F+ + AI+GG+              +   GM 
Sbjct: 56  HFNFIGGGDVKLITALLFSLNLQES-LDFIIYTAIMGGV--------------VMTIGML 100

Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161
           + +  + K  +PY +AIS G L+S 
Sbjct: 101 INQVDIKKRGVPYAVAISGGFLLSL 125


>gi|332162952|ref|YP_004299529.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318604225|emb|CBY25723.1| type IV prepilin peptidase TadV/CpaA [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667182|gb|ADZ43826.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862297|emb|CBX72458.1| hypothetical protein YEW_HH31900 [Yersinia enterocolitica W22703]
          Length = 128

 Score = 81.9 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 20/145 (13%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L+F   SD+    I N+  I +  + +   F +       A+++++     +I +  F
Sbjct: 2   LQLLFVCYSDIRYRTISNKFIITIAINAVALGFTM-----NHAINIVIPFSALLIGYSLF 56

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
            F+++GGGDVKL+T   +      S L F+ + A++GG+              + I GM 
Sbjct: 57  HFHLIGGGDVKLITVLLLALTTAKS-LDFILYTAMMGGV--------------VMIIGML 101

Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161
           V +  + +  +PY +AIS G L+S+
Sbjct: 102 VNREDIQQRGVPYAVAISAGFLLSF 126


>gi|94497252|ref|ZP_01303824.1| type IV prepilin peptidase, cpaA [Sphingomonas sp. SKA58]
 gi|94423357|gb|EAT08386.1| type IV prepilin peptidase, cpaA [Sphingomonas sp. SKA58]
          Length = 157

 Score = 81.9 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 14/162 (8%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIV 68
           A+ +     L+ AA++D+ S +I NR+++ +     L     G+D +  +A  LL+G IV
Sbjct: 9   ALMIALCALLIAAAITDMRSRIISNRLNMTVALLAPLWWLACGLDVWPGMATQLLLGAIV 68

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           F++    FA  +MGGGDVKLL + A+WF W    ++ +  +A+LGG +++ +L    I  
Sbjct: 69  FVLFAALFALGMMGGGDVKLLGALALWFPW-QVLMALVMLMAVLGGAVTLVVLIHHRIAK 127

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170
                          + +IPYG+AIS+  L    + YL + A
Sbjct: 128 K------------AGQPEIPYGVAISLAALWVIGERYLNQFA 157


>gi|83312838|ref|YP_423102.1| Flp pilus assembly protein, protease CpaA [Magnetospirillum
           magneticum AMB-1]
 gi|82947679|dbj|BAE52543.1| Flp pilus assembly protein, protease CpaA [Magnetospirillum
           magneticum AMB-1]
          Length = 160

 Score = 81.1 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 9/145 (6%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    L+ AA  DL +  I NRV + +L +F+  A   G+  E   LHL  G+  F++  
Sbjct: 12  VFVVALLDAAWGDLRALRIRNRVPLALLAAFVPAALAGGLSGEDWLLHLGTGMACFVVAA 71

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             F+  + GGGD KL+ +  +W G   +   FL  +A++GG++++  L  R         
Sbjct: 72  ILFSLGVWGGGDAKLVPAVTLWLGPA-ALPRFLLVMAVVGGLVALAALVRRRAEAGSLRP 130

Query: 134 GMFVPKSFLMKNKIPYGIAISMGGL 158
            +        +  +PYGIAI+ GGL
Sbjct: 131 AL--------RTHVPYGIAIAAGGL 147


>gi|85373133|ref|YP_457195.1| type IV prepilin peptidase, cpaA [Erythrobacter litoralis HTCC2594]
 gi|84786216|gb|ABC62398.1| type IV prepilin peptidase, cpaA [Erythrobacter litoralis HTCC2594]
          Length = 167

 Score = 80.3 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 15/154 (9%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82
            +DL S  I N ++  +     L  +  G+D +  +A  L V LI F IC   FA   MG
Sbjct: 23  FTDLRSRQIGNWLNGAIALGAPLFWWSSGLDLWPGVAWQLGVALITFAICAGLFAMRWMG 82

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
           GGDVKLLT+ A+W      F + +  +A+LGG+L++      +I            +   
Sbjct: 83  GGDVKLLTALALWIAPA-LFFNLIVIMALLGGVLTLLFGMWHLI------------RRQR 129

Query: 143 MKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176
            +  IPYG+AIS  GL     ++ F +A   ++A
Sbjct: 130 ERLAIPYGVAISAAGLWIL-TTHYFPLAQASIAA 162


>gi|103486619|ref|YP_616180.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256]
 gi|98976696|gb|ABF52847.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256]
          Length = 162

 Score = 80.3 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 14/170 (8%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVG 65
           +   +  +    ++ AA+SD+ S  I N +++ M    +    + G+  +  + +     
Sbjct: 6   IALGLMAVLGLMMIAAAVSDIRSRTISNELNVAMAILAVPFWVVSGLTLWPDVPIQFGAA 65

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           L+VF++    FA   MGGGDVK++ +  +W    P  L  L  +AI GGILS+ +L    
Sbjct: 66  LLVFLVFALLFAIGAMGGGDVKMICAVMLWIPL-PLVLPMLMVMAIGGGILSLIMLIHMK 124

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
           +            +      ++PYG+AI+  GL +    YL +   +GLS
Sbjct: 125 L------------RPSERPVEVPYGVAIAAAGLWALHQHYLNQFQAIGLS 162


>gi|114800034|ref|YP_761693.1| pilus assembly protein CpaA [Hyphomonas neptunium ATCC 15444]
 gi|114740208|gb|ABI78333.1| pilus assembly protein CpaA [Hyphomonas neptunium ATCC 15444]
          Length = 171

 Score = 80.3 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 5/163 (3%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           MV +A FL      V AAL D+    IPN +++ + G F+  A + G+  E+I  HL+ G
Sbjct: 4   MVLAAFFL---SLCVVAALYDINQLKIPNWLNLTIAGLFIPAAAVSGLPLEIIGGHLMAG 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            + F++ F  FAF I GGGD K++ +  +W G   +F    F +AI GGI ++ IL VR 
Sbjct: 61  GLAFVVAFGLFAFRIFGGGDAKMIPAVVLWMGPEAAFAF-AFKMAIAGGICAMLILAVRR 119

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
            T    + G F+   F  K  +PYG+AI+ G +++   S L  
Sbjct: 120 TTPAEAVPG-FMRAPFQDKASVPYGVAIAAGAILAGSASPLLA 161


>gi|255597443|ref|XP_002536775.1| conserved hypothetical protein [Ricinus communis]
 gi|223518589|gb|EEF25609.1| conserved hypothetical protein [Ricinus communis]
          Length = 169

 Score = 79.2 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 1/169 (0%)

Query: 5   KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
            ++  A+  +    L   A+ D+ +  +P R  + +   F   A ++      +  H+ +
Sbjct: 2   PLLSLALRAVALAVLFSLAVVDVRARRLPTRSVLALGLLFFADALVVHRSASDVLSHVAL 61

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
             +VF IC   FA   MGGGD KL  +  +W G  P     L  +++ G ++++  L  +
Sbjct: 62  AGVVFAICAVLFALGWMGGGDAKLAAAIFLWAGL-PLSWPALVLISVSGTVVALVSLATQ 120

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
            +        +     F     +PYG+A++ GG         F +  + 
Sbjct: 121 RLDPQHRARAVRALAMFSGTRGVPYGVALAAGGTAVIGLPAWFSLVAVR 169


>gi|238782883|ref|ZP_04626912.1| hypothetical protein yberc0001_35150 [Yersinia bercovieri ATCC
           43970]
 gi|238716306|gb|EEQ08289.1| hypothetical protein yberc0001_35150 [Yersinia bercovieri ATCC
           43970]
          Length = 140

 Score = 78.4 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 20/139 (14%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
             SD+   +I NR  + +  + L   F     ++   + +++ L   +  +  F F ++G
Sbjct: 20  CYSDIRHRIISNRFIMTIAINTLALGF-----FQYHRVSIIIPLFALVTGYILFNFKLIG 74

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
           GGDVKL+T   +      S L+F+ + AI+GG+              + I GM + ++ +
Sbjct: 75  GGDVKLITVLLLALTAEQS-LNFILYTAIMGGV--------------VMIIGMLINRADI 119

Query: 143 MKNKIPYGIAISMGGLISY 161
            +  +PY +AI+ G L+S 
Sbjct: 120 QQRGVPYAVAITGGFLLSL 138


>gi|153949206|ref|YP_001399596.1| type IV prepilin peptidase family protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960701|gb|ABS48162.1| type IV prepilin peptidase family [Yersinia pseudotuberculosis IP
           31758]
          Length = 132

 Score = 77.6 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 20/149 (13%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
            ++    L+F   SD+   +I N+  I +  + ++   +         + +++ ++    
Sbjct: 1   MVLIVSQLLFVCYSDIRHRIISNKFVISIAFNAIILILVT-----HHTVSIIIPIVALFF 55

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
            +  F FN+MGGGDVKL+T   +      S L+F+ + AI+GG++ +             
Sbjct: 56  GYIIFHFNVMGGGDVKLITVLLLALTAEQS-LNFIIYTAIMGGVVMLV------------ 102

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
             G+ + ++ + K  IPY IAI+ G L+S
Sbjct: 103 --GLLINRADIQKRGIPYAIAITAGFLLS 129


>gi|186896806|ref|YP_001873918.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis PB1/+]
 gi|186699832|gb|ACC90461.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis PB1/+]
          Length = 140

 Score = 76.5 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 76/153 (49%), Gaps = 20/153 (13%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           ++  ++ ++    L+F   SD+   +I N+  I +  + ++ + +         + +++ 
Sbjct: 3   IIRFSLMVLIVSQLLFVCYSDIRHRIISNKFVISIACNAIILSLVT-----HHTVSIIIP 57

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           +I   I +  F FN+MGGGDVKL+T+  +      S L+F+ + A++GGI          
Sbjct: 58  IIALFIGYIIFHFNVMGGGDVKLITALLLALTAEQS-LNFIIYTAVMGGI---------- 106

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
               + + G+ + +  + K  +PY +AI+ G L
Sbjct: 107 ----VMVVGLLINRVDIQKRGVPYAVAITAGFL 135


>gi|154244239|ref|YP_001415197.1| peptidase A24A prepilin type IV [Xanthobacter autotrophicus Py2]
 gi|154158324|gb|ABS65540.1| peptidase A24A prepilin type IV [Xanthobacter autotrophicus Py2]
          Length = 158

 Score = 76.1 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 9/153 (5%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
            P  L     +D+   +IPN V   +L  F   A L       ++L LLV + V  + F 
Sbjct: 12  YPTALCTCIGTDIARRIIPNTVIAALLIGFATLAILT--PLPDLSLRLLVAVAVTALGFS 69

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
            FA N++G GD KL     +W       L F+    ++GG+L++  L +    + +    
Sbjct: 70  LFAENVVGAGDAKLAGVLMLWTEPAQLPL-FVLACGLIGGVLTLAALAMHRPADRL---- 124

Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
             V    +    IPYG+A++  GL+ +P S L 
Sbjct: 125 --VGTIAVPGQTIPYGVALAGAGLLLHPYSSLL 155


>gi|326388866|ref|ZP_08210448.1| type IV prepilin peptidase, cpaA [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326206466|gb|EGD57301.1| type IV prepilin peptidase, cpaA [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 161

 Score = 75.7 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 14/147 (9%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82
            +DL    I N ++  +     L  +  G+  +  +AL L + +  F +    FA   MG
Sbjct: 23  FTDLRRRQIDNWLNATVALGAPLFWWASGLSLWPGVALQLALAVGTFAVLAGLFALRAMG 82

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
           GGDVKLLT+ A+W      FL  L  +A+ GG+L++ +                V +   
Sbjct: 83  GGDVKLLTALALWLPVV-LFLRLLLIMALAGGLLTIVLGMWH------------VTRRRK 129

Query: 143 MKNKIPYGIAISMGGLISYPDSYLFKV 169
            + +IPYG+AI+  GL     +     
Sbjct: 130 NRLQIPYGVAIAGAGLWILASTDWTHA 156


>gi|51597668|ref|YP_071859.1| hypothetical protein YPTB3370 [Yersinia pseudotuberculosis IP
           32953]
 gi|51590950|emb|CAH22608.1| Putative membrane protein [Yersinia pseudotuberculosis IP 32953]
          Length = 140

 Score = 75.3 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 20/153 (13%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           ++  ++ ++    L+F   SD+   +I N+  I +  + ++ + ++        + +++ 
Sbjct: 3   IIRFSLMVLIVSQLLFVCYSDIRHRIISNKFVISIAFNAIILSLVM-----HHTVSIIIP 57

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           ++   I +  F FN+MGGGDVKL+T+  +      S L+F+ + A++GGI          
Sbjct: 58  IVALFIGYIIFHFNVMGGGDVKLITALLLALTAEQS-LNFIIYTAVMGGI---------- 106

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
               + + G+ + +  + K  +PY +AI+ G L
Sbjct: 107 ----VMVVGLLINRVDIQKRGVPYAVAITAGFL 135


>gi|167836691|ref|ZP_02463574.1| peptidase A24A, prepilin type IV [Burkholderia thailandensis
           MSMB43]
          Length = 166

 Score = 75.3 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           ++  A+SDL    +PN     +   + + AFL G     +A H + G I F +    + F
Sbjct: 13  VIALAVSDLRFRRLPNLSVAALAALYCVHAFLAGSHAPELAAHAVAGGIAFAVAAVMWRF 72

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
             + GGD KL  +   W+          F V++ G ++ + +LT   +   +    +++ 
Sbjct: 73  GWIAGGDAKL-AAVVFWWAGLAHAAGVFFTVSVCGLVIGLAVLTAGAMLRRVAHAPLWL- 130

Query: 139 KSFLMKNKIPYGIAISMGGLIS 160
            S      +PYGIA+++GGL +
Sbjct: 131 TSLAPSRGVPYGIALALGGLQA 152


>gi|119566855|gb|ABL84263.1| TadV [Yersinia ruckeri]
          Length = 140

 Score = 75.3 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 20/141 (14%)

Query: 21  FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80
           +A  +D+   +I N     ++ S L TA      Y   ++ L+  LI+  I F  F F +
Sbjct: 18  WACYTDIRYRIIGND----LIVSMLFTAMAFSFSYRG-SISLIFPLIILTIGFIIFIFGL 72

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
           +GGGDVK++T  A       ++  F+ + AI+GG+              + I G+ + +S
Sbjct: 73  IGGGDVKMITVLACTLTPMQTY-HFITYTAIMGGV--------------VMIIGLVISRS 117

Query: 141 FLMKNKIPYGIAISMGGLISY 161
            + +  +PYG+AI+ G  +S 
Sbjct: 118 DIKERGVPYGVAIASGFSLSL 138


>gi|148557763|ref|YP_001265345.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1]
 gi|148502953|gb|ABQ71207.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1]
          Length = 157

 Score = 74.5 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 71/144 (49%), Gaps = 14/144 (9%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82
            +D+ +  I N ++  +    ++  ++ G   +  +AL + V L +F +    F   +MG
Sbjct: 22  WTDIRTRTISNELNAAIALLAIVFWWIAGEALWPDVALRIGVALAIFALFAVLFMLRMMG 81

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
           GGDVK++ + A+W  +  + +  L  +A+ GG +++ +L  +              +   
Sbjct: 82  GGDVKMIGALALWLPF-HALIVMLTVMALAGGAITLGLLIRQRW------------RPNA 128

Query: 143 MKNKIPYGIAISMGGLISYPDSYL 166
            + ++PYG+AI++GGL    +  L
Sbjct: 129 DRPEVPYGVAIAIGGLWVIANGLL 152


>gi|162147489|ref|YP_001601950.1| hypothetical protein GDI_1705 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545596|ref|YP_002277825.1| peptidase A24A prepilin type IV [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786066|emb|CAP55648.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533273|gb|ACI53210.1| peptidase A24A prepilin type IV [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 162

 Score = 74.5 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           V   + +I    LV+AAL D+    IP++V + + G     A L G     I   +LV +
Sbjct: 4   VVDGLVVISTIFLVYAALHDVAVRTIPDQVVVALGGLGATIAILHG----HIVGSILVAI 59

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
            VF +CF  + F  +GGGDVKLL++ ++ F    +  S++  +A+ GG+L+ F L VR  
Sbjct: 60  CVFGLCFAIWWFGAIGGGDVKLLSAASLLFPPA-AVPSWILTIAMSGGVLAGFYLMVRHR 118

Query: 127 TNHIPI-------FGMFVPKSFLMKNKIPYGIAISMG 156
               P+                     +PY +AI+ G
Sbjct: 119 VTVGPVRHGCFGRIVRSERWRMRRGGPLPYAVAIAAG 155


>gi|326797325|ref|YP_004315145.1| peptidase A24A prepilin type IV [Marinomonas mediterranea MMB-1]
 gi|326548089|gb|ADZ93309.1| peptidase A24A prepilin type IV [Marinomonas mediterranea MMB-1]
          Length = 182

 Score = 74.2 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 22/177 (12%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--------YEL 57
           M   A+ +I  F  ++  ++DLF   I NR+ +++L  +L++A L  +            
Sbjct: 1   MFDFAMPVILTFASLWVIVTDLFYRRIHNRLVLMLLVLWLVSAALSLITSDENRSALLAD 60

Query: 58  IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
                L  + V ++ FC F    MG GDVKL++   +W G     L+FL   A+ GG+L+
Sbjct: 61  FGYTSLGAVGVLLVGFCLFLVGQMGAGDVKLMSILCLWVGVEQQ-LTFLVVTALAGGVLA 119

Query: 118 VFIL-----------TVRMITNHIPIFGMFVPKSFLMK--NKIPYGIAISMGGLISY 161
           +F+             +  ++   P F +  P +F  +    +PYG+AIS+G     
Sbjct: 120 LFLPFISLIELAGAKAILQLSERYPSFKIPAPIAFSREGVKGLPYGLAISVGYFYVL 176


>gi|251789644|ref|YP_003004365.1| peptidase A24A prepilin type IV [Dickeya zeae Ech1591]
 gi|247538265|gb|ACT06886.1| peptidase A24A prepilin type IV [Dickeya zeae Ech1591]
          Length = 185

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 21/171 (12%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--------ELI 58
           V SA  L+   CLV+   SDL    IPNR  + +L  +L  + L               +
Sbjct: 7   VQSAYNLLLVVCLVWCIGSDLLLRRIPNRAVLALLLGWLALSALATAGVTGPLPRLSGSL 66

Query: 59  ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
              L   L+VF++ F  F    +G GDVKL++   +W G+    +SF+   AI GGIL++
Sbjct: 67  LQALPGALLVFVVGFLLFLTGRLGAGDVKLMSVLCLWVGYGHQ-ISFVMVTAIAGGILAL 125

Query: 119 FILTVRMITNHIPIFGMFVPKSF------------LMKNKIPYGIAISMGG 157
            +  +   +  + +    +                 +   IPYGIAI+ G 
Sbjct: 126 SLPLLNTCSTGVALLIERMNHLLKINITPPPMLSAELSQGIPYGIAIAFGA 176


>gi|152994345|ref|YP_001339180.1| peptidase A24A prepilin type IV [Marinomonas sp. MWYL1]
 gi|150835269|gb|ABR69245.1| peptidase A24A prepilin type IV [Marinomonas sp. MWYL1]
          Length = 186

 Score = 72.6 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 26/181 (14%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL------------LGM 53
           M    +  +  F  V+  L+DLF   I N + + +L  +   A L             G 
Sbjct: 1   MTDLLISSVLMFTSVWVILTDLFYRRIHNILIVGLLLGWCGIAILSFWSVGPYSNIHSGD 60

Query: 54  DYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
               +   +     V I+ F  F    MG GDVKL++   +W G+    + FL   A++G
Sbjct: 61  LLSYLGYSIAGAAGVLIVGFGLFLIGQMGAGDVKLMSVLCLWVGYDNQLV-FLVVTALVG 119

Query: 114 GILSVFILTVR-----------MITNHIPIFGMFVPKSFLMK--NKIPYGIAISMGGLIS 160
           G+L++ +  +             I++  P   +  P  F  +    +PYG+AIS G    
Sbjct: 120 GMLALLMPVLSLLEIAGAKVIVQISSRFPRLKIPAPLVFSREGVKGLPYGLAISGGAFYL 179

Query: 161 Y 161
            
Sbjct: 180 L 180


>gi|238759120|ref|ZP_04620289.1| hypothetical protein yaldo0001_3380 [Yersinia aldovae ATCC 35236]
 gi|238702668|gb|EEP95216.1| hypothetical protein yaldo0001_3380 [Yersinia aldovae ATCC 35236]
          Length = 130

 Score = 72.6 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 22/149 (14%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
            L+  F L+    +D+   +I N + I +  + +   F +        +++++ L   +I
Sbjct: 1   MLVFQFLLI--CYTDIRYRVISNGIIITIALNSIGLGFAV-----NNTVNVIIPLFSLLI 53

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
            +  F   ++GGGDVKL+T   +    T S L F+ + AI+GG               + 
Sbjct: 54  GYIIFHLKLIGGGDVKLITVLLLALTATQS-LDFILYTAIMGGA--------------VM 98

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
           I G+FV K  + +  +PY +AIS+G L+ 
Sbjct: 99  IIGLFVNKKDIQQRGVPYAVAISLGFLLV 127


>gi|209515949|ref|ZP_03264810.1| peptidase A24A prepilin type IV [Burkholderia sp. H160]
 gi|209503607|gb|EEA03602.1| peptidase A24A prepilin type IV [Burkholderia sp. H160]
          Length = 161

 Score = 72.6 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 6/146 (4%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L   A+ D+ S  +P R  +++   + + A + G+    +A HL    I F +    F
Sbjct: 11  LVLASLAVGDIRSRRLPTRAVLLVACLYGVDAAVTGVSIVSLAAHLGAAAIGFALFALLF 70

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPS--FLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
               MGGGDVKL  +  +W G   +    S + F  ++ G++++ +   R    H     
Sbjct: 71  RCGWMGGGDVKLAAAVFLWAGPAYAWPVFSIVSFCGLVLGLMALIMGLFRRHATHTFRAS 130

Query: 135 MFVPKSFLMKNKIPYGIAISMGGLIS 160
           M           +PYG+A+++GG+ +
Sbjct: 131 M----QLASPRGVPYGVALALGGIAA 152


>gi|238796998|ref|ZP_04640502.1| hypothetical protein ymoll0001_34110 [Yersinia mollaretii ATCC
           43969]
 gi|238719258|gb|EEQ11070.1| hypothetical protein ymoll0001_34110 [Yersinia mollaretii ATCC
           43969]
          Length = 124

 Score = 72.2 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 20/139 (14%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
             SD+   ++ N++ I +  + L   F      +   + +++ L   +  +  F FN++G
Sbjct: 4   CYSDIRHRIVSNKLIITVAITTLALGFA-----KNNTVSIVIPLFALLAGYIIFHFNLIG 58

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
           GGDVKL+T   +      S L F+ + AI+GG+              + I GM + +S +
Sbjct: 59  GGDVKLITVLLLTLTPGQS-LDFILYTAIMGGV--------------VMIIGMLINRSDI 103

Query: 143 MKNKIPYGIAISMGGLISY 161
            +  +PY +AIS+G L++ 
Sbjct: 104 QQRGVPYAVAISIGFLLAL 122


>gi|50119732|ref|YP_048899.1| hypothetical protein ECA0787 [Pectobacterium atrosepticum SCRI1043]
 gi|49610258|emb|CAG73701.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 183

 Score = 71.8 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 21/164 (12%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--------LLGMDYELIALHLLVGLIVF 69
           CL++   +DL    I N+  +++L  +L  +         L  +  +     L     V 
Sbjct: 16  CLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQSGGLDRLALQKTLWALPGAAAVL 75

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++ F  F    +G GDVKL++   +W G     + F+   A+ GG+L++ +  +  +   
Sbjct: 76  VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLNTVPTA 134

Query: 130 IP------------IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
           +                M       +   IPYG+AI+ G +   
Sbjct: 135 VAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAMYVL 178


>gi|52425836|ref|YP_088973.1| hypothetical protein MS1781 [Mannheimia succiniciproducens MBEL55E]
 gi|52307888|gb|AAU38388.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 166

 Score = 71.1 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 20/151 (13%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           ++LI    L++ + +D+ S +I NRV I +  + +  ++L     +   + +L G I   
Sbjct: 31  LYLIAVLQLIYLSWTDIKSRIIGNRVIISLFFTMVALSWL-----KYEQVFVLQGAIGLA 85

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           +CF  F   +MGGGD KL+    +        +SF F  A+ G +L              
Sbjct: 86  VCFILFMLKVMGGGDAKLIAVLMLSIPPA-QLISFFFLTAVFGLLL-------------- 130

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            I G    +  + +  +PYG+AIS G L + 
Sbjct: 131 IIIGWLFFRQSIKQKGLPYGVAISSGYLATL 161


>gi|22127356|ref|NP_670779.1| hypothetical protein y3482 [Yersinia pestis KIM 10]
 gi|45442770|ref|NP_994309.1| hypothetical protein YP_3009 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809088|ref|YP_653004.1| hypothetical protein YPA_3097 [Yersinia pestis Antiqua]
 gi|108810718|ref|YP_646485.1| hypothetical protein YPN_0553 [Yersinia pestis Nepal516]
 gi|145597789|ref|YP_001161865.1| hypothetical protein YPDSF_0479 [Yersinia pestis Pestoides F]
 gi|150260277|ref|ZP_01917005.1| putative prepilin peptidase [Yersinia pestis CA88-4125]
 gi|165939084|ref|ZP_02227636.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166212075|ref|ZP_02238110.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167419298|ref|ZP_02311051.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425122|ref|ZP_02316875.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466372|ref|ZP_02331076.1| membrane protein [Yersinia pestis FV-1]
 gi|218927884|ref|YP_002345759.1| hypothetical protein YPO0695 [Yersinia pestis CO92]
 gi|229837377|ref|ZP_04457540.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Pestoides A]
 gi|229840589|ref|ZP_04460748.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842861|ref|ZP_04463013.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900913|ref|ZP_04516037.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Nepal516]
 gi|270487707|ref|ZP_06204781.1| peptidase, A24 (type IV prepilin peptidase) family protein
           [Yersinia pestis KIM D27]
 gi|294502761|ref|YP_003566823.1| hypothetical protein YPZ3_0651 [Yersinia pestis Z176003]
 gi|21960440|gb|AAM87030.1|AE013951_5 hypothetical [Yersinia pestis KIM 10]
 gi|45437636|gb|AAS63186.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774366|gb|ABG16885.1| membrane protein [Yersinia pestis Nepal516]
 gi|108781001|gb|ABG15059.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115346495|emb|CAL19370.1| putative membrane protein [Yersinia pestis CO92]
 gi|145209485|gb|ABP38892.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149289685|gb|EDM39762.1| putative prepilin peptidase [Yersinia pestis CA88-4125]
 gi|165913040|gb|EDR31665.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166206821|gb|EDR51301.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963292|gb|EDR59313.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167055885|gb|EDR65666.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229682252|gb|EEO78344.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Nepal516]
 gi|229690128|gb|EEO82185.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696955|gb|EEO87002.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705500|gb|EEO91510.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Pestoides A]
 gi|262360793|gb|ACY57514.1| hypothetical protein YPD4_0605 [Yersinia pestis D106004]
 gi|262364738|gb|ACY61295.1| hypothetical protein YPD8_0605 [Yersinia pestis D182038]
 gi|270336211|gb|EFA46988.1| peptidase, A24 (type IV prepilin peptidase) family protein
           [Yersinia pestis KIM D27]
 gi|294353220|gb|ADE63561.1| hypothetical protein YPZ3_0651 [Yersinia pestis Z176003]
 gi|320016742|gb|ADW00314.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 140

 Score = 70.7 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 70/148 (47%), Gaps = 20/148 (13%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           + ++    L+F   SD+   +I N+  I +  + ++ + ++        + +++ ++   
Sbjct: 8   LIVLIVSQLLFVCYSDIRHRIISNKFIISISFNAIIFSLVM-----HHTVSIIIPIVALF 62

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           I +  F FN+MGGGDVKL+T   +      S L+F+ + A+              +   +
Sbjct: 63  IGYIIFHFNVMGGGDVKLITVLLLALTAEQS-LNFIIYTAV--------------MGGVV 107

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGL 158
            + G+ + +  + K  +PY +AI+ G L
Sbjct: 108 MVVGLLINRVDIQKRGVPYAVAITAGFL 135


>gi|253687066|ref|YP_003016256.1| peptidase A24A prepilin type IV [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753644|gb|ACT11720.1| peptidase A24A prepilin type IV [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 183

 Score = 70.7 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 21/164 (12%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--------LLGMDYELIALHLLVGLIVF 69
           CL++   +DL    I NR  +++L  +L  +         L  +        L     V 
Sbjct: 16  CLLWCISTDLLVRKITNRAVLILLLGWLFFSASHVLQSGALDMLALRKTLWALPGAAAVL 75

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++ F  F    +G GDVKL++   +W G     + F+   A+ GG+L++ +  +  +   
Sbjct: 76  VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLNTVPTA 134

Query: 130 IP------------IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
           +                M       +   IPYG+AI+ G +   
Sbjct: 135 VAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAMYVL 178


>gi|170022936|ref|YP_001719441.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis YPIII]
 gi|169749470|gb|ACA66988.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis YPIII]
          Length = 140

 Score = 69.9 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 70/148 (47%), Gaps = 20/148 (13%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           + ++    L+F   SD+   +I N+  I +  + ++ + +         + +++ ++   
Sbjct: 8   LMVLIVSQLLFVCYSDIRHRIISNKFVISIACNAIILSLVT-----HHTVSIIIPIVALF 62

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           I +  F FN+MGGGDVKL+T+  +      S L+F+ + A+              +   +
Sbjct: 63  IGYIIFHFNVMGGGDVKLITALLLALTAEQS-LNFIIYTAV--------------MGGVV 107

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGL 158
            + G+ + +  + K  +PY +AI+ G L
Sbjct: 108 MVVGLLINRVDIQKRGVPYAVAITAGFL 135


>gi|332188358|ref|ZP_08390083.1| type IV leader peptidase family protein [Sphingomonas sp. S17]
 gi|332011587|gb|EGI53667.1| type IV leader peptidase family protein [Sphingomonas sp. S17]
          Length = 161

 Score = 69.9 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 12/140 (8%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIM 81
            + D  +  I +R +  +     L  +  G+  +    L + V + +F++    F   +M
Sbjct: 22  GIEDARTREIADRKNAAIALIAPLWWWASGVPLWPDAMLQIGVAIGLFLLFALAFRVGMM 81

Query: 82  GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
           GGGDVK++ + A+W    P  +  L  ++I GGI+++ +L    +        +      
Sbjct: 82  GGGDVKMIAALALWLPLGP-LMRMLLLMSIAGGIVTLAMLIDHRLRRSGSDGAI------ 134

Query: 142 LMKNKIPYGIAISMGGLISY 161
               ++PYG+AI+M GL+  
Sbjct: 135 ----EVPYGVAIAMAGLLIL 150


>gi|238793620|ref|ZP_04637243.1| Flp pilus assembly protein, protease CpaA [Yersinia intermedia ATCC
           29909]
 gi|238727035|gb|EEQ18566.1| Flp pilus assembly protein, protease CpaA [Yersinia intermedia ATCC
           29909]
          Length = 154

 Score = 69.2 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 20/140 (14%)

Query: 22  AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81
              SD+ + +I N+  I ++ S +   +          +++ + L   ++ +  F F ++
Sbjct: 33  VCYSDICNRIISNKFIISIIFSSIAWGYTT-----NSTVNITIPLFSLLMGYIIFHFKLI 87

Query: 82  GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
           GGGDVKL+T+  +      S L F+ + AI+GG+              + I G+ + K  
Sbjct: 88  GGGDVKLITALLLALTAEQS-LDFIIYTAIMGGV--------------VMIIGLLINKHD 132

Query: 142 LMKNKIPYGIAISMGGLISY 161
           + +  +PY +AI+MG  +S 
Sbjct: 133 IQQRGVPYAVAITMGFALSL 152


>gi|227114874|ref|ZP_03828530.1| hypothetical protein PcarbP_18015 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 183

 Score = 68.8 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 21/169 (12%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--------LLGMDYELIALHLLV 64
           ++   CL++   +DL    I N+  +++L  +L  +         L  +  +     L  
Sbjct: 11  VLLMGCLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQSGALDMLALQKALWALPG 70

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
              V ++ F  F    +G GDVKL++   +W G     + F+   A+ GG+L++ +  + 
Sbjct: 71  AAAVLVVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLN 129

Query: 125 MITNHIP------------IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            +   +                M       +   IPYG+AI+ G +   
Sbjct: 130 TVPTAVAMGIQTANRIFKSRLPMPPALPADLSQGIPYGVAIAFGAMYVL 178


>gi|312115330|ref|YP_004012926.1| peptidase A24A prepilin type IV [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220459|gb|ADP71827.1| peptidase A24A prepilin type IV [Rhodomicrobium vannielii ATCC
           17100]
          Length = 161

 Score = 68.4 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 52/96 (54%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + S V    P  LV+AA  DL + +IPNR+ +V+   F + A L G+D   IA H    L
Sbjct: 5   LTSTVAAALPVLLVWAAAVDLLTRVIPNRLVLVLAACFAVFALLAGLDAARIASHAGCAL 64

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
           +V +  +  FA +++GGGD KLL   ++W G     
Sbjct: 65  LVLVCAYGLFAASLLGGGDAKLLAVASLWIGPNALL 100


>gi|261820212|ref|YP_003258318.1| peptidase A24A prepilin type IV [Pectobacterium wasabiae WPP163]
 gi|261604225|gb|ACX86711.1| peptidase A24A prepilin type IV [Pectobacterium wasabiae WPP163]
          Length = 183

 Score = 68.0 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 21/164 (12%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--------DYELIALHLLVGLIVF 69
           CL++   +DL    I N+  +++L  +L  + L  +            +   L     V 
Sbjct: 16  CLLWCISTDLLVRKITNQAVLILLLGWLFFSALYVLQSGALDMVALRKMLWALPGAAAVL 75

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++ F  F    +G GDVKL++   +W G     + F+   A+ GG+L++ +  +  +   
Sbjct: 76  VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FIMVTALAGGVLALSLPLLNTVPTA 134

Query: 130 IPI------------FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
           + +              M       +   IPYG+AI+ G +   
Sbjct: 135 VALGVQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAIYVL 178


>gi|227326300|ref|ZP_03830324.1| hypothetical protein PcarcW_02894 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 183

 Score = 67.6 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 21/164 (12%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--------LLGMDYELIALHLLVGLIVF 69
           CL++   +DL    I N+  +++L  +L  +         L  +    +   L     V 
Sbjct: 16  CLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQAGALDMLALRKMLWALPGAAAVL 75

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++ F  F    +G GDVKL++   +W G     + F+   A+ GG+L++ +  +  +   
Sbjct: 76  VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLNTVPTA 134

Query: 130 IP------------IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
           +                M       +   IPYG+AI+ G +   
Sbjct: 135 VAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAMYVL 178


>gi|149186253|ref|ZP_01864567.1| type IV prepilin peptidase, cpaA [Erythrobacter sp. SD-21]
 gi|148830284|gb|EDL48721.1| type IV prepilin peptidase, cpaA [Erythrobacter sp. SD-21]
          Length = 237

 Score = 67.6 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 2/98 (2%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82
            +DL S  I N++++ +     L  +  G+D +  + + L +    F IC  FFA   MG
Sbjct: 23  FTDLKSRTIGNKLNLAIAAGAPLFWWTTGLDLWPGVGIQLGIAAATFAICTLFFAIRQMG 82

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           GGDVKLLT+ A+WF  T +FL  +  +A+LG +L++ +
Sbjct: 83  GGDVKLLTALALWFPPT-NFLGLVLVMAMLGWVLTLVM 119


>gi|296284550|ref|ZP_06862548.1| type IV prepilin peptidase, cpaA [Citromicrobium bathyomarinum
           JL354]
          Length = 164

 Score = 67.2 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 14/143 (9%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAF 78
           V AA++DL S  I N ++  +     L  +   +  +  +AL   V +  F I    FA 
Sbjct: 19  VTAAITDLRSRRIANWLTGGVALGAPLFWWASSLSLWPGVALQFAVAVAAFAILAVLFAL 78

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
             MGGGDVKLLT+ A+W    P FL  +F +AILGG+L++      ++            
Sbjct: 79  RAMGGGDVKLLTALALWIAPLP-FLQLVFVMAILGGVLTLAFGAWHIM------------ 125

Query: 139 KSFLMKNKIPYGIAISMGGLISY 161
           +    +  IPYG+AIS  GL   
Sbjct: 126 RRRKERLAIPYGVAISAAGLWIL 148


>gi|54309658|ref|YP_130678.1| hypothetical protein PBPRA2494 [Photobacterium profundum SS9]
 gi|46914096|emb|CAG20876.1| Hypothetical membrane protein [Photobacterium profundum SS9]
          Length = 145

 Score = 66.8 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 14/146 (9%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
             + P  +++   SD+    I N V   +    L  AF        +A  ++  +I+F+I
Sbjct: 5   LQLMPLLMLWVTYSDIRYRRISNIVCAAVFSLSLTLAF----SQHQLADGIISSIIMFLI 60

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
               F FNI+  GD KL ++ AV        +S L+F  + GG+++V  L    +     
Sbjct: 61  SLLLFYFNIVAAGDGKLASAFAVALSP-QQLISALYFTLLFGGVVAVIYLIKYQLIQR-- 117

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGG 157
                  +S      +PYG+AI+ G 
Sbjct: 118 -------RSPEKARGLPYGVAIACGF 136


>gi|27378602|ref|NP_770131.1| hypothetical protein blr3491 [Bradyrhizobium japonicum USDA 110]
 gi|27351750|dbj|BAC48756.1| blr3491 [Bradyrhizobium japonicum USDA 110]
          Length = 171

 Score = 66.5 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 13/169 (7%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M     +     L+    L++ A  D+ + +I N + +V+    ++T     +    IA 
Sbjct: 1   MHLMNWIAPTASLLQILLLLYVATIDVATRLIRNEICLVLAFLGIVTQLPNAI---QIAE 57

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
            L+   I+F++ F  +    +GGGDVKLLT+ A+ F  T   +  L   A+ GGIL++  
Sbjct: 58  SLIAAAILFLLLFVLYTRGGIGGGDVKLLTALAIGFPLT-GVIQLLTVTALAGGILALVH 116

Query: 121 LTVRMITNHIPIFG---------MFVPKSFLMKNKIPYGIAISMGGLIS 160
           L +R++                        L    +PYG+A++ GG+ +
Sbjct: 117 LLMRLLPYPRLAPAGSSLMRRVYAVERWRHLRHAPLPYGVAVACGGIWT 165


>gi|327538083|gb|EGF24773.1| hypothetical protein RBWH47_03140 [Rhodopirellula baltica WH47]
          Length = 234

 Score = 66.1 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 2/116 (1%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +F+ + ++    L  A   DL +  IP+ +S+++    ++++ L  +   ++ + L  G+
Sbjct: 94  LFAIITIVVFSLLAIATACDLRTREIPDWISVLIGVVAIVSSLLGWLGLSIVWV-LAGGV 152

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +  +I    F F  +GGGD KL+ + A+  G     +  LF +AI GG+LS+  + 
Sbjct: 153 VGLVIASALFRFAKLGGGDGKLIIALAMLVGPVGILI-VLFGMAITGGVLSLIAML 207


>gi|197106457|ref|YP_002131834.1| Flp pilus assembly protein, protease CpaA [Phenylobacterium
           zucineum HLK1]
 gi|196479877|gb|ACG79405.1| Flp pilus assembly protein, protease CpaA [Phenylobacterium
           zucineum HLK1]
          Length = 164

 Score = 66.1 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 6/156 (3%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           +   ++    LV+AA SD F  +IPNRV  ++ G++LL    L +   +    L VG+  
Sbjct: 10  AFALVLFAASLVWAAASDFFRYLIPNRVCALIAGAYLLAFPALALSAWVGG--LGVGIAA 67

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
             +    FA   +GGGDVKL  + ++W G       F F  ++ G  L+V +L+      
Sbjct: 68  LALGTILFARGWVGGGDVKLAAALSLWAGPA-LLSGFAFVTSLAGAALAVAMLSPLRRLM 126

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
             P            +  +P+G+ ++ GG       
Sbjct: 127 PRPAGETLAEGL---RQPMPFGVPLAAGGGWVLTQH 159


>gi|103488243|ref|YP_617804.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256]
 gi|98978320|gb|ABF54471.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256]
          Length = 163

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 3/127 (2%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           SDL    IPN +  +++  F++   L          H    +   ++    F F   GGG
Sbjct: 22  SDLRYRRIPNLIPALIVLLFIVGWLLGFPFTGPWWAHGFHFVAALLVGMLLFRFGWFGGG 81

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV--FILTVRMITNHIPIFGMFVPKSFL 142
           D KL  + A+WF ++ + L  +F     G ++ +   +  V       P      P+   
Sbjct: 82  DAKLYAACALWFSFSDALL-LMFVTTASGAVIVLVRALAIVARSIFGSPGAPPDGPRQKR 140

Query: 143 MKNKIPY 149
               IPY
Sbjct: 141 APRTIPY 147


>gi|87199544|ref|YP_496801.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135225|gb|ABD25967.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 157

 Score = 64.9 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 9/154 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
            +  FL+     V   +SD+ +  +PN + +    + L  +  L    + I      G  
Sbjct: 7   QAIAFLLLLGFAVAGTISDVRNRRLPNWLCLATAVTGLGASLFLLEYGDPIWAFPAHGAA 66

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
             I+    FA   +GGGD K   + A WF    + L  L  V + G +L +    +R   
Sbjct: 67  SLIVGMALFALRWIGGGDAKFYAAVACWFPLRLAAL-LLVTVTLSGVLLLILFFAIRRFR 125

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                    +P S      +PYG+AI  GGL++ 
Sbjct: 126 G--------LPISRKDGASLPYGVAIGTGGLVAL 151


>gi|172062957|ref|YP_001810608.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
 gi|171995474|gb|ACB66392.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
          Length = 159

 Score = 63.8 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L     LV  A+ DL    + NR  +     + + A L        A H+     + ++ 
Sbjct: 7   LTATLVLVSIAMQDLRERRVSNRAVLAFAMLYPVAAALGREGLAPFAGHVATAAAMLVVF 66

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
                   +GGGDVKL  +  +W G  P  L  L  V   G    + +L        +  
Sbjct: 67  GALRHAGWLGGGDVKLAAAVFLWAGP-PLALPVLTIVGTSGAACGLAMLA------GVAR 119

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                P   +    +PYG+A++ GG ++
Sbjct: 120 QRRVAPAHPMATRGVPYGVALAFGGALA 147


>gi|87199103|ref|YP_496360.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134784|gb|ABD25526.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 166

 Score = 63.4 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 14/139 (10%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82
            +D+    I N ++  +  +     +  G+  +  IA+ + +    F++    FA  +MG
Sbjct: 27  FTDIRRRQIDNWLNAAIALAAPAYWWAAGLSLWPDIAMQVGLAAATFLVLAGLFALRLMG 86

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
           GGDVKLL++ A+ +     F+  L  +++LGG L++                        
Sbjct: 87  GGDVKLLSALAL-WLAPGMFVKLLVIMSLLGGFLTIVFAAWHYTVTR------------R 133

Query: 143 MKNKIPYGIAISMGGLISY 161
              KIPYG+AI+  GLI+ 
Sbjct: 134 RDAKIPYGVAIACAGLITL 152


>gi|85707704|ref|ZP_01038770.1| putative type IV prepilin peptidase, cpaA [Erythrobacter sp. NAP1]
 gi|85689238|gb|EAQ29241.1| putative type IV prepilin peptidase, cpaA [Erythrobacter sp. NAP1]
          Length = 165

 Score = 63.4 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 20/145 (13%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFN--- 79
            +D+ S  I N ++I +     +  +  G   +  +   +   L+V  I           
Sbjct: 23  FTDIRSRTISNWLNIAIAAGAPVFWWASGSSLWPDVVWQIGFALVVCAILVGVAYIGYRL 82

Query: 80  ---IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
              I+GGGD+KLL + A+WF    S+L  L+++A+ GG++++  +   M           
Sbjct: 83  NIVILGGGDIKLLGALALWFTPM-SYLGMLWYMALCGGVMAILFVLRLMFLRP------- 134

Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161
                  +  +PYG+AI+ G L+  
Sbjct: 135 -----KTRGVLPYGVAIAGGALLVL 154


>gi|78062908|ref|YP_372816.1| peptidase A24A, prepilin type IV [Burkholderia sp. 383]
 gi|77970793|gb|ABB12172.1| Peptidase A24A, prepilin type IV [Burkholderia sp. 383]
          Length = 157

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 9/147 (6%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    L   A  DL    + NR  +     + + A L    +  +A H+  G  + ++  
Sbjct: 8   VATVLLASLAAQDLRDRRLSNRGVLAFAALYFVAAALARDGFAPLAGHVATGAAMLLLFG 67

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
                  +GGGDVKL  +  +W G  P+    +      GG+L    L         P+ 
Sbjct: 68  GMRHAGWIGGGDVKLAAAVFLWAG--PALAFPVLTGVGAGGVLCGVALLASRPRRAAPVR 125

Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLIS 160
            +           +PYG+A+++GG ++
Sbjct: 126 AV-------ATRGVPYGVALALGGTLA 145


>gi|170703399|ref|ZP_02894176.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10]
 gi|170131688|gb|EDT00239.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10]
          Length = 159

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 7/148 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L     LV  A+ DL    + NR  +     +L+ A L+       A H+     + ++ 
Sbjct: 7   LTATLVLVSIAMQDLRERRVSNRAVLAFAMLYLVAAALVREGLASFAGHVATAAAMLVVF 66

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
                   +GGGDVKL  +  +W G  P  L  L  V   G    + ++        +  
Sbjct: 67  GGMRHAGWLGGGDVKLAAAVFLWAGP-PLALPVLTIVGASGAACGLAMIA------AVAR 119

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                P   +    +PYG+A++ GG ++
Sbjct: 120 QRRVAPAHPMATRGVPYGVALAFGGALA 147


>gi|158421905|ref|YP_001523197.1| prepilin peptidase [Azorhizobium caulinodans ORS 571]
 gi|158328794|dbj|BAF86279.1| prepilin peptidase [Azorhizobium caulinodans ORS 571]
          Length = 155

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 14/166 (8%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M    +  +   ++ P  LV A  SDL    IPN V + +L  F   AFL  +D   + L
Sbjct: 1   MSPVLLAEAFASILVPVALVAALASDLSRRTIPNIVVLALLLGFAALAFLGYVD--DLPL 58

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
            L++   V  + F  F+ +++G GD KL  +TA+W   T   L ++     +G +L    
Sbjct: 59  RLVLAGAVLCVGFALFSEDVIGAGDAKLAAATALWLDPTQFPL-YVLLCGAMGALLVAAA 117

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166
              R                  +   +PYG+A++  GL  +P S L
Sbjct: 118 TVARQQ-----------GWGGRLARGLPYGVALATAGLALFPYSSL 152


>gi|84385686|ref|ZP_00988717.1| hypothetical protein V12B01_26169 [Vibrio splendidus 12B01]
 gi|84379666|gb|EAP96518.1| hypothetical protein V12B01_26169 [Vibrio splendidus 12B01]
          Length = 146

 Score = 62.6 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 14/150 (9%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
             LI     V+ + +D     I N   +++L      + L         + ++  L+V  
Sbjct: 2   YLLILVIVCVYVSATDFLYRKIQNHTLLILLFLQCFLSPLD--------IQIMSFLLVLG 53

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
                +A   +G GD+K     ++         +F+   A  GG L+V  L    +    
Sbjct: 54  GGLIVYALIWIGAGDIKYAAVLSLTIPLNDLLWAFVM-TAFAGGFLAVIYLVYNKL---- 108

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
            I    V K+   +  IPYGIAIS+G  + 
Sbjct: 109 -ISKRLVRKTSNGQQGIPYGIAISVGFYLV 137


>gi|153834037|ref|ZP_01986704.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio harveyi
           HY01]
 gi|148869592|gb|EDL68582.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio harveyi
           HY01]
          Length = 162

 Score = 62.6 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+    L+   +SD     IPN+  +++L    +TA L          HL  GL+ F  C
Sbjct: 5   LVIWSLLIAIGVSDAQKHRIPNKAVLLLLT--AVTANLAFNANSDGLDHLYGGLVTFAAC 62

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
           F  + F +M GGDVKLL     W G + +       + + GG++ +F L + + ++   +
Sbjct: 63  FVLYLFKVMAGGDVKLLAVIGAWLGLS-NIGEATVGIILAGGVVGLFYLALYVCSSTTSL 121

Query: 133 FGMF 136
              F
Sbjct: 122 TEQF 125


>gi|288956967|ref|YP_003447308.1| hypothetical protein AZL_001260 [Azospirillum sp. B510]
 gi|288909275|dbj|BAI70764.1| hypothetical protein AZL_001260 [Azospirillum sp. B510]
          Length = 155

 Score = 62.2 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 6/152 (3%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           + ++      +A +SD+    IPN +S+ +   F + A           L      + F 
Sbjct: 5   LSVVLCGLFAWAMVSDIRRRTIPNWISLALAVLFAV-ATAADPGRFDPVLAATAAGLTFA 63

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           I    F   ++GGGDVKL+T+ A+W G +          A++GG+++   L +R +    
Sbjct: 64  ILLAAFLAGLVGGGDVKLMTAAALWTGLS-GLPGLFLGTALIGGLMAFGALALRGLRRLG 122

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162
            +      +       +PYG+AI    L+S P
Sbjct: 123 LLSREGAGEMD----GLPYGVAIGAAALLSIP 150


>gi|115358169|ref|YP_775307.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
 gi|115283457|gb|ABI88973.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
          Length = 159

 Score = 62.2 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 7/148 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L     LV  A+ DL    + NR  +     +L+ A L+       A H+     + ++ 
Sbjct: 7   LTATLVLVSIAMQDLRERRVSNRAVLAFAMLYLIAAALVREGLAPFAGHVATAAAMLVVF 66

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
                   +GGGDVKL  +  +W G  P  L  L  V   G    + +L        +  
Sbjct: 67  GALRHAGWLGGGDVKLAAAVFLWAGP-PLALPVLTIVGASGAACGLAMLA------GLAR 119

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                P   +    +PYG+A++ GG ++
Sbjct: 120 QRRVAPAHPMATRGVPYGVALAFGGALA 147


>gi|171317757|ref|ZP_02906939.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5]
 gi|171097107|gb|EDT41960.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5]
          Length = 159

 Score = 62.2 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 7/148 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L   F LV  A  DL    + NR  +     +L+ A L+       A H+     + ++ 
Sbjct: 7   LAATFVLVSIAAQDLRERRVSNRAVLAFAMLYLVAAALVREGLAPFAGHVATAAAMLVVF 66

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
                   +GGGDVKL  +  +W G T   L  L  V   G    + +L        +  
Sbjct: 67  GGLRHAGWLGGGDVKLAAAVFLWAGPT-LALPVLTIVGASGAACGLAMLA------AVAR 119

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                P   +    +PYG+A+++GG+++
Sbjct: 120 QRRIAPAHTMATRGVPYGVALALGGVLA 147


>gi|15602719|ref|NP_245791.1| hypothetical protein PM0854 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721163|gb|AAK02938.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 143

 Score = 61.4 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 20/142 (14%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L+  + +D+ S +I N++  ++L   +  A++     +   +  L  L+  +I F  F
Sbjct: 15  ILLIILSWTDIKSRIISNKIVFLLLLVMVPLAWI-----QHKQIFFLPALLTLVIGFLLF 69

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
            F +MG GD+KL++   +    +   + F  F A  G  L               I G  
Sbjct: 70  TFGVMGAGDIKLMSVLMLTIPHS-QIIYFFLFTAFSGLFL--------------IIIGFL 114

Query: 137 VPKSFLMKNKIPYGIAISMGGL 158
             +  + ++ +PYG+AIS G +
Sbjct: 115 FFRHSIRQHGLPYGVAISCGFI 136


>gi|197103823|ref|YP_002129200.1| prepilin peptidase CpaA [Phenylobacterium zucineum HLK1]
 gi|196477243|gb|ACG76771.1| prepilin peptidase CpaA [Phenylobacterium zucineum HLK1]
          Length = 172

 Score = 61.1 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 3/149 (2%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           ++  A+ D+ S  IPN + + + G+F+  A   G+    +A H  +G+   ++    FA 
Sbjct: 17  VIAGAVKDVASFTIPNWIPLALAGAFVPAALAAGLPPAALAAHAGLGVGALVLGMVLFAV 76

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF--GMF 136
             +GGGD KL+ +  +W GW P+  +FL    I GG LS+ +L +R     + +     +
Sbjct: 77  RAIGGGDGKLMAAAVLWLGW-PALPTFLLVTVIAGGALSLGLLALRAPALRVLVLSGPAW 135

Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSY 165
             +    K  +PYG+AI+ G L ++P S 
Sbjct: 136 FVRLAEPKEGVPYGLAIAAGALAAFPLSP 164


>gi|90412178|ref|ZP_01220184.1| Hypothetical membrane protein [Photobacterium profundum 3TCK]
 gi|90326902|gb|EAS43287.1| Hypothetical membrane protein [Photobacterium profundum 3TCK]
          Length = 145

 Score = 61.1 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 14/146 (9%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
             + P  +++    D+    I N V   +    L+ AF        +A  ++  +I+ +I
Sbjct: 5   LQLMPLLMLWVTYLDIRYRRISNIVCAAVFSLSLILAF----SQHQLADGIISSIIMLLI 60

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
               F FNI+  GD KL ++ AV        +S L+F ++ GG+++V  L    +     
Sbjct: 61  SLLLFYFNIVAAGDGKLASAFAVALSP-QQLISALYFTSLFGGVVAVIYLIKYQLIQR-- 117

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGG 157
                   S      +PYG+AI+ G 
Sbjct: 118 -------SSPEKARGLPYGVAIACGF 136


>gi|163801679|ref|ZP_02195577.1| hypothetical protein 1103602000597_AND4_09502 [Vibrio sp. AND4]
 gi|159174596|gb|EDP59398.1| hypothetical protein AND4_09502 [Vibrio sp. AND4]
          Length = 145

 Score = 60.3 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 20/154 (12%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
            S  FL+   CL + ++ D     I N    ++L      + +         + +    +
Sbjct: 4   ESYFFLLFIVCL-YVSVVDFLHRKIHNLTLFILLVFQCFLSPID--------IQIASFFL 54

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
           +  I    ++ N +G GD+K     ++         SF+   A  GG L+V  L  + + 
Sbjct: 55  ILGIGLILYSQNWIGAGDIKYAAVLSLTIVPNDLLWSFVM-TAYAGGFLAVMYLLGQKLP 113

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            ++             +  IPYGIAIS+G  +  
Sbjct: 114 INVS----------NTQEGIPYGIAISIGFYLII 137


>gi|24114271|ref|NP_708781.1| hypothetical protein SF3007 [Shigella flexneri 2a str. 301]
 gi|24053425|gb|AAN44488.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|281602357|gb|ADA75341.1| putative tight adherance operon protein [Shigella flexneri 2002017]
          Length = 155

 Score = 60.3 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 20/156 (12%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
            L     L+F +  D+   +I +R  +V+     L      +  +    +L+    V ++
Sbjct: 19  LLFVALFLIFISWGDILLRIISHRYLLVLTVLIFLA-----LILQHQKPNLVAAGSVLLV 73

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
            F  F+  I+GGGDVKLLT  ++         +FL  +   G ++ +             
Sbjct: 74  GFFLFSAGIIGGGDVKLLTVLSLAID-EHELANFLVAMTFCGALVVLA------------ 120

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
             G+   +  + +N +PY + IS+  L++YP   LF
Sbjct: 121 --GLLFFRKSIRENGVPYAVPISLAFLLTYPVFPLF 154


>gi|313648076|gb|EFS12522.1| type IV leader peptidase family protein [Shigella flexneri 2a str.
           2457T]
          Length = 147

 Score = 59.5 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 20/156 (12%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
            L     L+F +  D+   +I +R  +V+     L      +  +    +L+    V ++
Sbjct: 11  LLFVALFLIFISWGDILLRIISHRYLLVLTVLIFLA-----LILQHQKPNLVAAGSVLLV 65

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
            F  F+  I+GGGDVKLLT  ++         +FL  +   G ++ +             
Sbjct: 66  GFFLFSAGIIGGGDVKLLTVLSLAID-EHELANFLVAMTFCGALVVLA------------ 112

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
             G+   +  + +N +PY + IS+  L++YP   LF
Sbjct: 113 --GLLFFRKSIRENGVPYAVPISLAFLLTYPVFPLF 146


>gi|328474267|gb|EGF45072.1| hypothetical protein VP10329_16210 [Vibrio parahaemolyticus 10329]
          Length = 162

 Score = 59.1 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+    L+   +SD     IPN+  +++L    +TA +L      +  H   GL+ F +C
Sbjct: 5   LVIWSLLIAIGVSDAQKHRIPNKAVLLLLV--AVTANVLYSPSVSLLDHAYGGLVAFAVC 62

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
           F  +    M GGDVKLL     W G + +       + + GGI+ +F L + + +  + +
Sbjct: 63  FALYLVKAMAGGDVKLLAVIGTWLGLS-NLWEASIGIILAGGIVGIFYLMLHIASTSVAL 121


>gi|28899196|ref|NP_798801.1| hypothetical protein VP2422 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361566|ref|ZP_05774593.1| peptidase, A24 family [Vibrio parahaemolyticus K5030]
 gi|260876723|ref|ZP_05889078.1| peptidase, A24 family [Vibrio parahaemolyticus AN-5034]
 gi|260898198|ref|ZP_05906694.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
           parahaemolyticus Peru-466]
 gi|260900394|ref|ZP_05908789.1| peptidase, A24 family [Vibrio parahaemolyticus AQ4037]
 gi|28807420|dbj|BAC60685.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308089056|gb|EFO38751.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
           parahaemolyticus Peru-466]
 gi|308091369|gb|EFO41064.1| peptidase, A24 family [Vibrio parahaemolyticus AN-5034]
 gi|308109134|gb|EFO46674.1| peptidase, A24 family [Vibrio parahaemolyticus AQ4037]
 gi|308114018|gb|EFO51558.1| peptidase, A24 family [Vibrio parahaemolyticus K5030]
          Length = 162

 Score = 58.7 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+    L+   +SD     IPN+  +++L    +TA +L      +  H   GL+ F +C
Sbjct: 5   LVIWSLLIAIGVSDAQKHRIPNKAVLLLLV--AVTANVLYSPSVSLLDHAYGGLVAFAVC 62

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
           F  +    M GGDVKLL     W G + +       + + GGI+ +F L + + +  + +
Sbjct: 63  FALYLVKAMAGGDVKLLAVIGAWLGLS-NLWEASIGIILAGGIVGIFYLMLHIASTSVAL 121


>gi|153836819|ref|ZP_01989486.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
           parahaemolyticus AQ3810]
 gi|149749965|gb|EDM60710.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
           parahaemolyticus AQ3810]
          Length = 162

 Score = 58.4 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+    L+   +SD     IPN+  +++L    +TA +L      +  H   GL+ F +C
Sbjct: 5   LVIWSLLIAIGVSDAQKHRIPNKAVLLLLV--AVTANVLYSPSVSLLDHAYGGLVAFAVC 62

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
           F  +    M GGDVKLL     W G + +       + + GGI+ +F L + + +  + +
Sbjct: 63  FALYLVKAMAGGDVKLLAVIGAWLGMS-NLWEASIGIILAGGIVGIFYLMLHIASTSVAL 121


>gi|33152388|ref|NP_873741.1| flp operon protein B [Haemophilus ducreyi 35000HP]
 gi|21326705|gb|AAL92465.1| unknown [Haemophilus ducreyi]
 gi|33148611|gb|AAP96130.1| flp operon protein B [Haemophilus ducreyi 35000HP]
          Length = 144

 Score = 58.0 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 63/151 (41%), Gaps = 20/151 (13%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            +F      L++ + +D+ S +I N+V + +  + L  ++          ++ +  LI  
Sbjct: 8   VLFSFIVLLLIWLSYTDIRSRIITNKVVLALFCAILPFSWFT-----QGMVYPMPALICL 62

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           +I F  F   ++G GD KL+    +      +     F      G++ +  L  R +   
Sbjct: 63  VIGFVLFMLGVIGAGDAKLMAVLMLAVPPEYTIFFLFFTTCAGLGLIIIGGLFFRQV--- 119

Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                       ++K  +PYG+AIS+G + +
Sbjct: 120 ------------IVKKGLPYGVAISVGFIAT 138


>gi|297581606|ref|ZP_06943528.1| predicted protein [Vibrio cholerae RC385]
 gi|297534013|gb|EFH72852.1| predicted protein [Vibrio cholerae RC385]
          Length = 138

 Score = 58.0 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 16/151 (10%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    LV+ ALSDL    +PN   I+        A ++G    L   ++L+ ++V  + 
Sbjct: 3   IVTVLLLVWVALSDLQQRKVPNIAVIL-------FAVVVGAVTPLSQGNVLISVVVLSLG 55

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              F F + G GD KLL   A  +G    + S +F  A+ GG+LSV              
Sbjct: 56  MLAFHFRLFGAGDSKLLAVCA--YGAGDQWTSLIFITALFGGVLSVMCWIHNWGVQTGFS 113

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
               V         +PY +AI      +   
Sbjct: 114 SKPPV-------KTVPYAVAICGAAFATLHY 137


>gi|147677479|ref|YP_001211694.1| type II secretory pathway, prepilin signal peptidase PulO and
           related peptidases [Pelotomaculum thermopropionicum SI]
 gi|146273576|dbj|BAF59325.1| type II secretory pathway, prepilin signal peptidase PulO and
           related peptidases [Pelotomaculum thermopropionicum SI]
          Length = 250

 Score = 57.6 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
             A  ++    L+ AA  D    +IP++++++ + + L  A+L+  D     L   +   
Sbjct: 98  QGAAMVLFFALLITAAFIDFKHQIIPDKLAVLGIIAGLPLAWLVSADRLKSGLLGFLAAG 157

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
             ++     +   MGGGDVKL     ++ GW P+ L  LF   + GG + +F+L     +
Sbjct: 158 AIMLAIALASRGGMGGGDVKLSAVMGLFLGW-PAVLVALFLAFLAGGAVGLFLLATGRKS 216

Query: 128 NHIPIF 133
               + 
Sbjct: 217 RKDAVP 222


>gi|238755448|ref|ZP_04616788.1| Flp pilus assembly protein, protease CpaA [Yersinia ruckeri ATCC
           29473]
 gi|238706289|gb|EEP98666.1| Flp pilus assembly protein, protease CpaA [Yersinia ruckeri ATCC
           29473]
          Length = 104

 Score = 57.2 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 15/103 (14%)

Query: 59  ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
           ++ L+  LI+  I F  F F ++GGGDVK++T  A       ++  F+ + AI+GG+   
Sbjct: 15  SISLIFPLIILTIGFIIFIFGLIGGGDVKMITVLACTLTPMQTY-HFITYTAIMGGV--- 70

Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                      + I G+ + +S + +  +PYG+AI+ G  +S 
Sbjct: 71  -----------VMIIGLVISRSDIKERGVPYGVAIASGFSLSL 102


>gi|87312295|ref|ZP_01094393.1| type IV prepilin peptidase CpaA-like protein [Blastopirellula
           marina DSM 3645]
 gi|87284999|gb|EAQ76935.1| type IV prepilin peptidase CpaA-like protein [Blastopirellula
           marina DSM 3645]
          Length = 238

 Score = 56.8 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 19/165 (11%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    L+ AA+ D F   +PN ++   + +   T  ++   +E +   +L  ++   +  
Sbjct: 69  VVTVTLIVAAVIDGFQLKVPNWITFPFIIA-GWTYSVIAFGWEGLGWSMLGTVVGLALLL 127

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             +A   MG GDVKLL     W   T +F +F    A++G +L++ ++  R         
Sbjct: 128 PAYAIGGMGAGDVKLLAGVGAWMYGTHTFYAFCI-SAVVGAVLAIGMVLFRGAWEKHSNQ 186

Query: 134 GMFVPKSFLMKNK-----------------IPYGIAISMGGLISY 161
              +    L                     +PYGI I++G +  +
Sbjct: 187 AWMILNEILTIRDPNQLSAIAAERKPTMMLLPYGIPIAIGSIAYF 231


>gi|148262015|ref|YP_001236142.1| peptidase A24A, prepilin type IV [Acidiphilium cryptum JF-5]
 gi|146403696|gb|ABQ32223.1| peptidase A24A, prepilin type IV [Acidiphilium cryptum JF-5]
          Length = 167

 Score = 56.4 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L FA   DL    IP+ V   M  + +      G  ++   + L V  ++F + F  +  
Sbjct: 13  LAFACWQDLLLRRIPDGVPAAMALAGIFLRLRDG--FQPFGVSLAVAAVLFAVLFAVYLR 70

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
             +GGGDVKL+ + A+ +G   +   FLF   + GGIL++  L +R+        G 
Sbjct: 71  RSIGGGDVKLIVALALGYGPL-ALAGFLFATVLAGGILALAYLALRVAAPPPRPAGH 126


>gi|296133253|ref|YP_003640500.1| peptidase A24A domain protein [Thermincola sp. JR]
 gi|296031831|gb|ADG82599.1| peptidase A24A domain protein [Thermincola potens JR]
          Length = 250

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 16/153 (10%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
            + V+L+    L+  +  DL   +IPN + I+ L   L    +  +      L       
Sbjct: 98  EAVVYLVLISLLIVISFIDLRLKIIPNGLIIIGLVVGLAINIIRPLTTFSGGLVGFFSAG 157

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
              +     +   MGGGD+KL     +W GW  +FL F     + G  + + ++     +
Sbjct: 158 CLFLAIAVLSKGGMGGGDIKLAAMLGLWLGWQQAFLGFFL-AFLSGTAVGIGLMATGQKS 216

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                           K+ IP+G  IS+G L+S
Sbjct: 217 R---------------KDAIPFGPFISLGALLS 234


>gi|326405524|ref|YP_004285606.1| putative peptidase A24A [Acidiphilium multivorum AIU301]
 gi|325052386|dbj|BAJ82724.1| putative peptidase A24A [Acidiphilium multivorum AIU301]
          Length = 167

 Score = 56.1 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L FA   DL    IP+ V   M  + +      G  ++ + + L V  ++F + F  +  
Sbjct: 13  LAFACWQDLLLRRIPDGVPAAMALAGIFLRLRDG--FQPLGVSLAVAAVLFAVLFAVYLR 70

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
             +GGGDVKL+ + A+ +G   +   FLF   + GGIL++  L +R+        G 
Sbjct: 71  RSIGGGDVKLIVALALGYGPL-ALAGFLFATVLAGGILALAYLALRVAAPPPRPAGH 126


>gi|116621340|ref|YP_823496.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224502|gb|ABJ83211.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 184

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 1/133 (0%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    ++ AA+ D+    IPN +++  + + +     L      +   L    + F +  
Sbjct: 13  LLLAVVLGAAIYDIRYRRIPNWLNMFGVLAGIAMNTFLYQGLPGLVFALKGLFLAFAVYV 72

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             +A + MG GDVKL+ +     GW   F  F+   A++GGI+S+ ++  R         
Sbjct: 73  VLYALHAMGAGDVKLMAAVGAIVGWENWFGIFIV-TAVIGGIMSLILVASRGRVKKTLFN 131

Query: 134 GMFVPKSFLMKNK 146
             F+         
Sbjct: 132 VSFILSEMKSGRP 144


>gi|190149867|ref|YP_001968392.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|189914998|gb|ACE61250.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
          Length = 142

 Score = 55.7 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 20/156 (12%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           +  S +  I    L+    +DL   +I NRV + +L   +  ++L+        L  L  
Sbjct: 3   LFISTLIAIMVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGTLSWLPA 57

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           ++  +I F  F  N +G GDVKLLT   +    +P  + FLF  A  G +L         
Sbjct: 58  VLCLVIGFVLFLLNAIGAGDVKLLTVLMLAIP-SPLAIFFLFLTACSGLLL--------- 107

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                 I G    +  + +  +PYGIAIS G L + 
Sbjct: 108 -----IIIGWLFYRKTIREKGLPYGIAISTGFLTTL 138


>gi|307263191|ref|ZP_07544812.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|306871553|gb|EFN03276.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 131

 Score = 55.3 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 20/144 (13%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            L+    +DL   +I NRV + +L   +  ++L+        L  L  ++  +I F  F 
Sbjct: 4   LLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGTLSWLPAVLCLVIGFVLFL 58

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
            N +G GDVKLLT   +    +P  + FLF  A  G +L               I G   
Sbjct: 59  LNAIGAGDVKLLTVLMLAIP-SPLAIFFLFLTACSGLLL--------------IIIGWLF 103

Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161
            +  + +  +PYGIAIS G L + 
Sbjct: 104 YRKTIREKGLPYGIAISTGFLTTL 127


>gi|322434102|ref|YP_004216314.1| peptidase A24A prepilin type IV [Acidobacterium sp. MP5ACTX9]
 gi|321161829|gb|ADW67534.1| peptidase A24A prepilin type IV [Acidobacterium sp. MP5ACTX9]
          Length = 182

 Score = 55.3 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 17/160 (10%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
            C    +L DL S  IPNR++        L   L    +  + L  L GLI   I   FF
Sbjct: 15  VCASIGSLHDLRSRRIPNRLTGP-AILCGLLLHLALGGWTQLGLSALAGLIAGGIFLVFF 73

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
               MG GDVKL+T+     G T      L    ++G ++ V +   R       +  + 
Sbjct: 74  VAGGMGAGDVKLMTAVGCLAG-TAYIKEVLIATVLIGALMGVALALYRGRLRETMLNVIT 132

Query: 137 VPKSFLMKN---------------KIPYGIAISMGGLISY 161
           + +    +                ++PY + I+ G L+++
Sbjct: 133 LVQHHGAEGLAAHPELNVRNVATLRLPYALPIAAGCLLTF 172


>gi|307256576|ref|ZP_07538357.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306864986|gb|EFM96888.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 131

 Score = 54.9 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 20/144 (13%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            L+    +DL   +I NRV + +L   +  ++L+        L  L  ++  +I F  F 
Sbjct: 4   LLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGTLSWLPAVLCLVIGFVLFL 58

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
            N++G GDVKLL    +      SF  F  F+    G+L + I             G   
Sbjct: 59  LNVIGAGDVKLLAVLMLAVP--SSFAIFFLFLTACSGLLIIII-------------GWLF 103

Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161
            +  + +  +PYGIAIS G L + 
Sbjct: 104 YRQTIREKGLPYGIAISTGFLTTL 127


>gi|86147470|ref|ZP_01065782.1| hypothetical protein MED222_21489 [Vibrio sp. MED222]
 gi|85834763|gb|EAQ52909.1| hypothetical protein MED222_21489 [Vibrio sp. MED222]
          Length = 176

 Score = 54.9 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+    L+  ++ D+  + IPN+V I+ +  + +     G  ++ + + L+  + +F   
Sbjct: 6   LVFWVLLIIVSVFDVKESRIPNKVLILFVLLYFILLINGGFSWDSLVISLMGAITLFFSG 65

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              +    M  GDVK L    ++ GW  + L   +++ I  GI++ F L      +    
Sbjct: 66  LFLYLLKAMSAGDVKFLGVIGLYVGWG-NLLDTSYYILISSGIIATFYLLYNNANSESLT 124

Query: 133 FGMFVPKSFLMKNKI 147
              +  +  ++ + +
Sbjct: 125 VRNYFEEKLMLVSGM 139


>gi|126208039|ref|YP_001053264.1| flp operon protein B [Actinobacillus pleuropneumoniae L20]
 gi|126096831|gb|ABN73659.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 142

 Score = 54.9 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 20/156 (12%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           +  S +  I    L+    +DL   +I NRV + +L   +  ++L+        L  L  
Sbjct: 3   LFISTLIAIMVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGTLSWLPA 57

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           ++  +I F  F  N++G GDVKLL    +      SF  F  F+    G+L + I     
Sbjct: 58  VLCLVIGFVLFLLNVIGAGDVKLLAVLMLAVP--SSFAIFFLFLTACSGLLIIII----- 110

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                   G    +  + +  +PYGIAIS G L + 
Sbjct: 111 --------GWLFYRQTIREKGLPYGIAISTGFLTTL 138


>gi|32452621|gb|AAP43983.1| TadV [Aggregatibacter actinomycetemcomitans]
 gi|109727127|gb|ABG45871.1| TadV [Aggregatibacter actinomycetemcomitans]
          Length = 142

 Score = 54.9 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 20/152 (13%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
            +A+ +I    L+  +++D+ S +I NR+ + +L + +  + L     +   + ++  L 
Sbjct: 5   INALVIITLSLLITLSITDIRSRLISNRIVLFLLFAIIPFSLL-----KYQTIFVMPALC 59

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
             II F  F+   +G GD+KL +   +       F  F F      G++ +  L  R   
Sbjct: 60  TLIIGFLLFSLRFIGAGDIKLASVLMLAIPSGEVFSFFFFTTFAGLGLIIIGWLFFRK-- 117

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
                         + +N +PYG+AIS+G +I
Sbjct: 118 -------------SIKENGLPYGVAISLGFMI 136


>gi|307245414|ref|ZP_07527502.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307254369|ref|ZP_07536207.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306853755|gb|EFM85972.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306862668|gb|EFM94624.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
          Length = 142

 Score = 54.9 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 20/156 (12%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           +  S +  +    L+    +DL   +I NRV + +L   +  ++L+       ++     
Sbjct: 3   LFISTLIAVMVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGSISWFPA 57

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           ++  +I F  F  N++G GDVKLL    +    +P  + FLF  A  G +L         
Sbjct: 58  ILCLVIGFVLFLLNVIGAGDVKLLAVLMLAVP-SPFAVFFLFLTACAGLLL--------- 107

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                 I G    +  + +  +PYGIAIS G L + 
Sbjct: 108 -----IIIGWLFYRKAIREKGLPYGIAISAGFLTTL 138


>gi|307261007|ref|ZP_07542689.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869309|gb|EFN01104.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 131

 Score = 54.9 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 20/144 (13%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            L+    +DL   +I NRV + +L   +  ++L+        L  L  ++  +I F  F 
Sbjct: 4   LLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGTLSWLPAVLCLVIGFVLFL 58

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
            N++G GDVKLL    +      SF  F  F+    G+L + I             G   
Sbjct: 59  LNVIGAGDVKLLAVLMLAVP--SSFAIFFLFLTACSGLLIIII-------------GWLF 103

Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161
            +  + +  +PYGIAISMG L + 
Sbjct: 104 YRQTIREKGLPYGIAISMGFLTTL 127


>gi|296122070|ref|YP_003629848.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776]
 gi|296014410|gb|ADG67649.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776]
          Length = 218

 Score = 54.5 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 8/128 (6%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIA 59
           M    MVF A  L+       AA +DL    I N +++      ++      G+    +A
Sbjct: 4   MNPQTMVFLAGVLV---LTTTAAYTDLRYFRIYNWLTLPAFALGWIYQVAFYGLP--GLA 58

Query: 60  LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV--AILGGILS 117
              L   I F + F  FA    GGGD KL+ + +VW GW  +  + +  +    +G ++ 
Sbjct: 59  DAGLGFAIGFGLFFLLFAIGASGGGDTKLMGALSVWLGWKLTLYTVVLTILFVAIGSVVM 118

Query: 118 VFILTVRM 125
           +    +R 
Sbjct: 119 LIWSVLRR 126


>gi|312882142|ref|ZP_07741891.1| prepilin peptidase CpaA [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370188|gb|EFP97691.1| prepilin peptidase CpaA [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 145

 Score = 54.5 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 19/155 (12%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M     FL+  F  +    SD F   I N   +++L   +  + L         ++    
Sbjct: 1   MSLEVYFLVLAFICLCICFSDYFYRKIHNSALLILLIFQVFFSPLD--------IYFTSF 52

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +V  I    +A   +G  D+K  +  ++   +     +++   +  GG L+VF    R 
Sbjct: 53  ALVLGIGLILYALIYIGASDIKYASVMSLTVAFDDILWAYI-TTSFAGGFLAVFYFLSRK 111

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                      + K    +  IP+GIAIS+G  + 
Sbjct: 112 ----------LLSKKRFNQEGIPFGIAISIGFYLI 136


>gi|260914314|ref|ZP_05920783.1| flp operon protein B [Pasteurella dagmatis ATCC 43325]
 gi|260631415|gb|EEX49597.1| flp operon protein B [Pasteurella dagmatis ATCC 43325]
          Length = 143

 Score = 54.5 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 20/132 (15%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
           + +D+   +I N++ +++L   L  +++     +   + ++  LI FII F  F    +G
Sbjct: 21  SYTDIKHRIISNKIVLILLLVILPLSWI-----KYGEIFVVPALISFIIGFILFNLKTVG 75

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
            GDVKL++   +        +SF FF A                   + I G    +  +
Sbjct: 76  AGDVKLVSVLMLAIP-QEQIMSFFFFTA--------------CSGLILIIIGWIFFRESI 120

Query: 143 MKNKIPYGIAIS 154
           +KN +PYG+AIS
Sbjct: 121 LKNHLPYGVAIS 132


>gi|225872752|ref|YP_002754209.1| type IV prepilin leader peptidase family protein [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791712|gb|ACO31802.1| type IV prepilin leader peptidase family protein [Acidobacterium
           capsulatum ATCC 51196]
          Length = 191

 Score = 54.5 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 17/158 (10%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           + D  +  IPN+++   L + LL  F     +  + +  L  L+ F++   FF    MG 
Sbjct: 34  VHDARTRRIPNKLTGPALLAGLLLHFAFD-GWRGMGMAALAALLAFVVFLVFFLAGGMGA 92

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GDVKL+T+ A         +  L   AI GG++++ +   R            +      
Sbjct: 93  GDVKLMTAVAC-VAGNHFVIELLVTTAIAGGVMALGLALARGRFKQTLGNVAMLMSHHRH 151

Query: 144 KN---------------KIPYGIAISMGGLISYPDSYL 166
                            ++PYG+AI+ G + +   +Y+
Sbjct: 152 AGLQPHPELNVRNQQSLRLPYGLAIAAGCIFTLASTYV 189


>gi|320158380|ref|YP_004190758.1| type IV prepilin peptidase TadV/CpaA [Vibrio vulnificus MO6-24/O]
 gi|319933692|gb|ADV88555.1| type IV prepilin peptidase TadV/CpaA [Vibrio vulnificus MO6-24/O]
          Length = 146

 Score = 54.1 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 17/146 (11%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           A+ LI  F  ++A+ +D  S +I N   +       + AFL G         LL+  + F
Sbjct: 4   AITLIF-FTALYASFTDAKSRVISNHTVVFAFLCCFIFAFLNGYLLH----SLLIATLCF 58

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
              F  +     GGGD K      V        +  + ++ + GGI  + +         
Sbjct: 59  AFSFILWLLGFWGGGDAKYFPVMMVGVKPD-YAIEAICYIGLFGGITVIGVYVY------ 111

Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISM 155
                  + K  + K  IPYGI IS 
Sbjct: 112 -----CLIAKKEIKKIGIPYGIPISA 132


>gi|26000710|gb|AAN75206.1| TadV [Aggregatibacter actinomycetemcomitans]
          Length = 142

 Score = 54.1 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 20/153 (13%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           V +A+ +I    L+  +++D+ S +I NRV + +L   +  + L     +   + ++  L
Sbjct: 4   VINALVIITLLLLITLSVTDIRSRLISNRVVLFLLFVIVPFSLL-----KYQTIFVIPAL 58

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
              II F  F+ + +G GDVKL++   +       F  F F      G++ +  L  R  
Sbjct: 59  CTLIIGFLLFSLHFIGAGDVKLVSVLMLAVPSDEIFSFFFFTTFAGLGLIIIGWLFFRK- 117

Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
                          + +N +PYG+AIS+G +I
Sbjct: 118 --------------SIKENGLPYGVAISLGFMI 136


>gi|171920999|gb|ACB59182.1| TadV [Actinobacillus suis ATCC 33415]
          Length = 143

 Score = 54.1 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 20/138 (14%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
            +DL   +I NR+ + +L   +  ++L+        L  L  L+   I F  F FNI+G 
Sbjct: 21  WTDLRYRLISNRIIMALLLVTIPFSYLV-----HGTLFWLPALLCLAIGFILFMFNIIGA 75

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GDVKLL    +    +   + FLF  A  G +L               I G    +  + 
Sbjct: 76  GDVKLLAVLMLAIP-SHFAVFFLFLTACAGLLL--------------IIIGWLFYRQSIR 120

Query: 144 KNKIPYGIAISMGGLISY 161
           +  +PYGIAIS+G L + 
Sbjct: 121 EKGLPYGIAISVGFLTTL 138


>gi|307133494|dbj|BAJ19006.1| TadV [Aggregatibacter actinomycetemcomitans]
 gi|307548785|dbj|BAJ19107.1| TadV [Aggregatibacter actinomycetemcomitans]
 gi|307548800|dbj|BAJ19121.1| TadV [Aggregatibacter actinomycetemcomitans]
          Length = 142

 Score = 53.7 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 20/134 (14%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
           D+ S +I NRV + +L   +  + L     +   + ++  L   II F  F+ + +G GD
Sbjct: 23  DIRSRLISNRVVLFLLFVIVPFSLL-----KYQTIFVIPALCTLIIGFLLFSLHFIGAGD 77

Query: 86  VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
           VKL++   +       F  F F      G++ +  L  R                 + +N
Sbjct: 78  VKLVSVLMLAVPSDEIFSFFFFTTFAGLGLIIIGWLFFRK---------------SIKEN 122

Query: 146 KIPYGIAISMGGLI 159
            +PYG+AIS+G +I
Sbjct: 123 GLPYGVAISLGFMI 136


>gi|172087796|ref|YP_001816738.1| hypothetical protein VF_A1179 [Vibrio fischeri ES114]
 gi|171902380|gb|ACB55706.1| hypothetical protein VF_A1179 [Vibrio fischeri ES114]
          Length = 144

 Score = 53.7 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 18/136 (13%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
              D+    I NR+ +++L   +      G         L   +I+F+  F  F   ++ 
Sbjct: 20  CYQDITRRTISNRMCLIVLIICIFLVIKNG-----NYSSLYYSVIIFLGGFILFIKKVIA 74

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
            GDVKL++S  +        L+F   + + GG++S+ +L  ++I                
Sbjct: 75  AGDVKLISSFFIAINQNYQLLTFTIIL-LAGGVISIVLLIHKIINKEN------------ 121

Query: 143 MKNKIPYGIAISMGGL 158
               +PYG+ I +G L
Sbjct: 122 TTMTVPYGVPICIGCL 137


>gi|283787706|ref|YP_003367571.1| prepilin peptidase TadV [Citrobacter rodentium ICC168]
 gi|282951160|emb|CBG90851.1| putative prepilin peptidase TadV [Citrobacter rodentium ICC168]
          Length = 132

 Score = 53.7 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 20/143 (13%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            L+    +DLF   I N+  +++L   L++  +     +     ++   ++ ++ F   +
Sbjct: 1   MLLRVCYTDLFYRKIKNKTVVLILIVSLVSGII-----QYGIPSIIFPCVILLVGFLLSS 55

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
           F+++G GDVKLL + +     +   L F+   A+ G ++ + ++ + ++           
Sbjct: 56  FSLVGAGDVKLLVALSFSL-SSEDILRFITTTALCGLLVVIPVIYICIVKR--------- 105

Query: 138 PKSFLMKNKIPYGIAISMGGLIS 160
                 K  +PYGIAISMG  I 
Sbjct: 106 -----KKTTVPYGIAISMGYFIV 123


>gi|296121062|ref|YP_003628840.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776]
 gi|296013402|gb|ADG66641.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776]
          Length = 183

 Score = 53.7 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 19/168 (11%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L+ AA  D     +PN ++  M+ S L+  F++G  +  +   L+  ++        +
Sbjct: 18  LVLILAAWIDGKELRVPNWITFPMVLSGLIYGFVMG-GWAGLGDSLIGMVVGLACLLPLY 76

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
           A   MG GDVKL+     W G   ++ +F+  V ++G I+++ +   R   +      M 
Sbjct: 77  AVGGMGAGDVKLMAGMGAWLGAAITWQAFMVSV-VVGAIMAIIMACYRKDLHKHVGQAML 135

Query: 137 VPKSFLMKNK-----------------IPYGIAISMGGLISYPDSYLF 167
           +   +                      +PYGI I +G +  +  + L 
Sbjct: 136 IWTEWTTIRDPRKLSEIAAERKPRMLLLPYGIPICIGSIAYFVYAGLI 183


>gi|261867457|ref|YP_003255379.1| TadV [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|8096200|dbj|BAA25888.2| unnamed protein product [Actinobacillus actinomycetemcomitans]
 gi|109727129|gb|ABG45872.1| TadV [Aggregatibacter actinomycetemcomitans]
 gi|261412789|gb|ACX82160.1| TadV [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 142

 Score = 53.7 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 20/135 (14%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +D+ S +I NRV + +L   +  + L     +   + ++  L   II F  F+   +G G
Sbjct: 22  TDIRSRLISNRVVLFLLLVIIPFSLL-----KYQTIFVIPALCTLIIGFLLFSLRFIGAG 76

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           D+KL +   +       F  F F      G++ +  L  R                 + +
Sbjct: 77  DIKLASVLMLAVPSDEVFSFFFFTTFAGLGLIIIGWLFFRK---------------SIKE 121

Query: 145 NKIPYGIAISMGGLI 159
           N +PYG+AIS+G +I
Sbjct: 122 NGLPYGVAISLGFMI 136


>gi|258405294|ref|YP_003198036.1| peptidase A24A prepilin type IV [Desulfohalobium retbaense DSM
           5692]
 gi|257797521|gb|ACV68458.1| peptidase A24A prepilin type IV [Desulfohalobium retbaense DSM
           5692]
          Length = 189

 Score = 53.7 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 19/163 (11%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
            L+ P  L+FAAL DL    IPN ++  +   F L           +A  +   L+   +
Sbjct: 12  LLLFPA-LIFAALYDLRYQKIPNLLNFPLAL-FALIYHTAFTGLNGLAFGVTGMLLGTAL 69

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
               + F  MG GD KL+ +     G    F+S LF  AI GG+ +V +L V        
Sbjct: 70  FLPPYIFGGMGAGDTKLMGAIGAVLGAKGVFVSALF-TAIFGGLYAVLLLLVHRGYARTL 128

Query: 132 IFGMF--VPKSFLMKNKIP--------------YGIAISMGGL 158
           +   +  +    L++  IP              YGIAI++G L
Sbjct: 129 MQRTWEGLKTLVLVRRYIPDSSPQSTNTSPRLCYGIAIALGTL 171


>gi|148974888|ref|ZP_01811868.1| hypothetical protein VSWAT3_25224 [Vibrionales bacterium SWAT-3]
 gi|145965397|gb|EDK30646.1| hypothetical protein VSWAT3_25224 [Vibrionales bacterium SWAT-3]
          Length = 152

 Score = 53.7 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 16/138 (11%)

Query: 22  AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81
               D     IPN ++ + L   L+ A   G     +A  L + ++ F+I    +   ++
Sbjct: 22  VCFFDWKHRKIPNNLNKIALVVNLVVALSNGY----LASSLPISIVCFVIGVLLWYLKVI 77

Query: 82  GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
           G GDVKLLT+  +        ++ L  +  +GG L + +  +             + +  
Sbjct: 78  GAGDVKLLTALVIGIQPD-LVIATLISIGFMGGGLVLIMYIIGK-----------IKRFN 125

Query: 142 LMKNKIPYGIAISMGGLI 159
             K  IPYGI I++   I
Sbjct: 126 SYKKGIPYGIPIALSCFI 143


>gi|269962014|ref|ZP_06176369.1| hypothetical protein VME_27530 [Vibrio harveyi 1DA3]
 gi|269833337|gb|EEZ87441.1| hypothetical protein VME_27530 [Vibrio harveyi 1DA3]
          Length = 161

 Score = 53.4 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 3/113 (2%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            LV   +SD     IPN+  +++L     +  L          HL  GL+ F +CF  + 
Sbjct: 9   LLVAIGVSDAQKHKIPNKAVLLLLVVVAASVVLG--PNSNGLDHLYGGLVAFAVCFVLYL 66

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
             +M GGDVKLL     W G + +  +    + + GG++S+F L + + ++ I
Sbjct: 67  CKVMAGGDVKLLAVLGAWIGLS-NLGAASTGIVLAGGVVSLFYLALHIGSSTI 118


>gi|241662167|ref|YP_002980527.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12D]
 gi|240864194|gb|ACS61855.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12D]
          Length = 179

 Score = 53.4 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 17/168 (10%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           S   L     ++ AA  D+ +  IPN +  + L S L+   +           L    + 
Sbjct: 8   SLANLALILLVLTAAAYDVRTRRIPNWLVGMGLVSALVAQGMAIGVGAGCLAWLGGAAVG 67

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
             +CF FF    MG GDVKL+ +   + G   +F        + GG+L++ ++ +R    
Sbjct: 68  IGLCFGFFVLGGMGAGDVKLMGAIGAFMGPFGAF-HVALVSFLAGGVLALVMVLLRREAR 126

Query: 129 HIPIFGMFVPKSFLMKNK----------------IPYGIAISMGGLIS 160
                   +  S    +K                +PY +A + G L+ 
Sbjct: 127 RSAAGVSALLLSIPFGSKTVHAEGQGPKHGGTIQLPYAVAFAAGTLLV 174


>gi|221066741|ref|ZP_03542846.1| peptidase A24A prepilin type IV [Comamonas testosteroni KF-1]
 gi|220711764|gb|EED67132.1| peptidase A24A prepilin type IV [Comamonas testosteroni KF-1]
          Length = 189

 Score = 53.4 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 1/104 (0%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL-IVFIICFCFFAFNIMGGG 84
           DL    + N + ++ L + L   F     +++   + LVG+ + F+    F+A   MG G
Sbjct: 19  DLRIRKVRNWMVLLGLIAGLAVLFSSKQPFQVSVWNGLVGMCLAFVALMPFYALRWMGAG 78

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           DVK      +WFG++   L      ++L G+  + +L    +  
Sbjct: 79  DVKFAAVIGLWFGFSHHLLVIWLGGSLLAGLHGLLVLAWHSVWR 122


>gi|170724968|ref|YP_001758994.1| peptidase A24A prepilin type IV [Shewanella woodyi ATCC 51908]
 gi|169810315|gb|ACA84899.1| peptidase A24A prepilin type IV [Shewanella woodyi ATCC 51908]
          Length = 164

 Score = 53.4 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 14/133 (10%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +D+    I N      L   +  A    +  E      L G ++F +    F F  +  G
Sbjct: 17  TDICKRRISNIGCFATLIICVWLAASQQLLIEGF----LTGSLIFALSLVLFRFRWLAAG 72

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           D KL ++ AV    +   ++ L    I GG+L+V  L    +   IP             
Sbjct: 73  DGKLASALAVALPLSQLPVA-LMLTLICGGVLAVIYLIKYRVIQKIPRGEDL-------- 123

Query: 145 NKIPYGIAISMGG 157
             +PYGIAIS+G 
Sbjct: 124 -GLPYGIAISLGF 135


>gi|17545376|ref|NP_518778.1| prepilin peptidase transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17427668|emb|CAD14187.1| probable prepilin peptidase transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 172

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 59/163 (36%), Gaps = 12/163 (7%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           +   L     +V AA+ D+ +  IPNR+    L + L+    +          L      
Sbjct: 6   ALANLSLLVLVVTAAVHDVRTRRIPNRLVAAGLAAALIAQCAMLGPVAGALAWLGGAAAG 65

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
             +C   +    MG GDVKL+ +   + G   + L       + GG+L+V ++ +    N
Sbjct: 66  MGLCIGLYLLRGMGAGDVKLMGAIGAFTGPL-AALHVGLASCVAGGVLAVAMVALDARKN 124

Query: 129 HIPIFGMFVPKSFLMKNK-----------IPYGIAISMGGLIS 160
                    P +                 +PY +A + G L+ 
Sbjct: 125 MGMALLFSAPVADRQTQPKESVRRGNAIRLPYAVAFAAGTLLV 167


>gi|156975626|ref|YP_001446533.1| prepilin peptidase CpaA [Vibrio harveyi ATCC BAA-1116]
 gi|156527220|gb|ABU72306.1| hypothetical protein VIBHAR_03359 [Vibrio harveyi ATCC BAA-1116]
          Length = 147

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 13/151 (8%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           V++         +LSD+    I N   +V+     + A  +G+    ++   ++G+    
Sbjct: 4   VYITLAIVCFVVSLSDIRERTIKNSHVLVIA----VLAIAIGIADFSLSSLWVIGICWSA 59

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           + F      ++GGGDVKL+ + ++    T S L  L FV I GGIL+V  L +   ++  
Sbjct: 60  LLF-LHVLGVLGGGDVKLIAAFSLSLP-TQSLLEALIFVGIYGGILAVIYLILLRPSHVT 117

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                   +  + +  +PYG+AI  G   + 
Sbjct: 118 -------GEGDIPQIGLPYGVAICCGFYTAL 141


>gi|46143343|ref|ZP_00135452.2| COG4960: Flp pilus assembly protein, protease CpaA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 131

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 20/144 (13%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            L+    +DL   +I NRV + +L   +  ++L+        L  L  ++  +I F  F 
Sbjct: 4   LLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGTLSWLPAVLWLVIGFVLFL 58

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
            N++G GDVKLL    +      SF  F  F+    G+L + I             G   
Sbjct: 59  LNVIGAGDVKLLAVLMLAVP--SSFAIFFLFLTACTGLLIIII-------------GWLF 103

Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161
            +  + +  +PYGIAIS G L + 
Sbjct: 104 YRQTIREKGLPYGIAISTGFLTTL 127


>gi|309780762|ref|ZP_07675503.1| peptidase A24A, prepilin type IV [Ralstonia sp. 5_7_47FAA]
 gi|308920444|gb|EFP66100.1| peptidase A24A, prepilin type IV [Ralstonia sp. 5_7_47FAA]
          Length = 179

 Score = 53.0 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 17/168 (10%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           S   L     ++ AA  D+ +  IPN +  + L S L+   +           L    + 
Sbjct: 8   SLANLALILLVLTAAAYDVRTRRIPNWLVGMGLVSALVAQGMAIGVGAGCLAWLGGAAVG 67

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
             +CF FF    MG GDVKL+ +   + G   +F        + GG+L++ ++ +R    
Sbjct: 68  IGLCFGFFVLGGMGAGDVKLMGAIGAFMGPFGAF-HVALVSFLAGGVLALVMVLLRREAR 126

Query: 129 HIPIFGMFVPKSFLMKNK----------------IPYGIAISMGGLIS 160
                   +  S    +K                +PY +A + G L+ 
Sbjct: 127 RSAAGVSALLLSIPFGSKAVHAEGQGPKHGGTIQLPYAVAFAAGTLLV 174


>gi|323493937|ref|ZP_08099054.1| hypothetical protein VIBR0546_01886 [Vibrio brasiliensis LMG 20546]
 gi|323311878|gb|EGA65025.1| hypothetical protein VIBR0546_01886 [Vibrio brasiliensis LMG 20546]
          Length = 152

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 16/157 (10%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M    ++   + +I   C   + +SD     I NR+  +++ +  + AF  G   +    
Sbjct: 1   MNLDNIIAVTIVIINIACAFHSCISDHQHRTISNRICKLLIITNTIAAFYYGYGIQ---- 56

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
            + +  ++F I    +     G GD+KLL + +V        L+ L  V ++GG+  V +
Sbjct: 57  SVTITSVIFFILIIIWLIGAFGAGDIKLLCAFSVGIKP-ELTLACLVLVGLIGGLQLVVM 115

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
             + ++T           K+ + +  IPYGI IS+ G
Sbjct: 116 FLIGLMT-----------KTNIFEKGIPYGIPISISG 141


>gi|299069501|emb|CBJ40770.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia
           solanacearum CMR15]
          Length = 185

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 12/145 (8%)

Query: 25  SDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHL-LVGLIVFIICFCFFAFNIMG 82
           SDL S  +PN +  V ++ S +L  F   M        + L G I        +A   MG
Sbjct: 25  SDLRSRRVPNWLVAVGLVLSIVLVKFGSVMALAYDWRDVWLGGAIALASFLPLYALGWMG 84

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP---- 138
            GDVK      +  GW    ++     ++L G+ ++ IL +R      P   M +     
Sbjct: 85  AGDVKFFAVAGLLAGW-HGLVAIWLVSSVLAGVHALAILLLRRADASAPSGWMLMRVCPA 143

Query: 139 -----KSFLMKNKIPYGIAISMGGL 158
                     +  IPY   +++G L
Sbjct: 144 LARWDAEQAGRRGIPYAAYMAIGLL 168


>gi|332765440|gb|EGJ95658.1| putative membrane protein [Shigella flexneri 2930-71]
          Length = 110

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 15/124 (12%)

Query: 44  FLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL 103
            L     L +  +    +L+    V ++ F  F+  I+GGGDVKLLT  ++         
Sbjct: 1   MLTVLIFLALILQHQKPNLVAAGSVLLVGFFLFSAGIIGGGDVKLLTVLSLAID-EHELA 59

Query: 104 SFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163
           +FL  +   G ++ +               G+   +  + +N +PY + IS+  L++YP 
Sbjct: 60  NFLVAMTFCGALVVLA--------------GLLFFRKSIRENGVPYAVPISLAFLLTYPV 105

Query: 164 SYLF 167
             LF
Sbjct: 106 FPLF 109


>gi|163738362|ref|ZP_02145777.1| hypothetical protein RGBS107_10076 [Phaeobacter gallaeciensis
           BS107]
 gi|161388283|gb|EDQ12637.1| hypothetical protein RGBS107_10076 [Phaeobacter gallaeciensis
           BS107]
          Length = 188

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 8/148 (5%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           + P C V  AL+DL    IPN    ++   F++    L M +      LL   I   + F
Sbjct: 35  VVPLCCV-VALNDLRHMRIPNWTVDLLGAIFVIVGPFL-MSWTDYGWQLLHLPIGIGLGF 92

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             ++  ++G GD K   + A +  +          V I   +L    LT R+        
Sbjct: 93  LCYSAGMVGAGDAKFAGAAAPFVVFG----DLSVVVIIFSAMLLAGFLTHRIAKYTPLRR 148

Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISY 161
                KS+ + +K P G  + +GG + +
Sbjct: 149 LAPHWKSWDVGSKFPMG--LCLGGTLVF 174


>gi|254255252|ref|ZP_04948568.1| Type II secretory pathway prepilin signal peptidase PulO
           [Burkholderia dolosa AUO158]
 gi|124900989|gb|EAY71739.1| Type II secretory pathway prepilin signal peptidase PulO
           [Burkholderia dolosa AUO158]
          Length = 200

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 14/160 (8%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L      + AA +D+ S  IPNRV  V L   L+    L          L        + 
Sbjct: 33  LCVTLLAIVAASTDIASRRIPNRVVAVGLVGALIAQCALHGIAAGALQWLAGAATGLALL 92

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG-GILSVFILTVRMITNHIP 131
             F+    M  GDVKL+ +   W G   +F   L    + G G + + +L  R+    + 
Sbjct: 93  LPFYLLRGMAAGDVKLMLAIGAWVGAEMTFYIALATFVLGGIGAIVLALLRGRVRDLCVN 152

Query: 132 IFGMFVPKSFLM-------------KNKIPYGIAISMGGL 158
           +  M   +SF +                +PYG+AI+ G L
Sbjct: 153 VCRMVARRSFALHGESADGSAPVASAGALPYGVAIAAGTL 192


>gi|309778772|ref|ZP_07673545.1| prepilin peptidase transmembrane protein [Ralstonia sp. 5_7_47FAA]
 gi|308922480|gb|EFP68104.1| prepilin peptidase transmembrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 185

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 12/153 (7%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLVGLIVFIICFC 74
              V A   D+ S  +PN + +  +   +      G+           L G I F     
Sbjct: 17  VLAVLAIALDIRSRRVPNWLVVAGVMLSIALIKFGGVQDLAYDWQDFWLGGAIAFACFLP 76

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
            +A   MG GDVK  T   +  GW    ++     +++ G+ ++ I+ +R +    P   
Sbjct: 77  LYALGWMGAGDVKFFTVVGLLAGW-HGLVAVWLVSSMISGLHALGIMMLRQLDASSPSAW 135

Query: 135 M---------FVPKSFLMKNKIPYGIAISMGGL 158
           +             +   +  IPY   +++G L
Sbjct: 136 IVMRVCPAVARWDTAQAGRRGIPYAAYMAIGLL 168


>gi|300704928|ref|YP_003746531.1| prepilin peptidase transmembrane protein [Ralstonia solanacearum
           CFBP2957]
 gi|299072592|emb|CBJ43942.1| putative prepilin peptidase transmembrane protein [Ralstonia
           solanacearum CFBP2957]
          Length = 176

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 16/166 (9%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
              L     +  AA SD+ +  IPN +    L + L+   L           L    +  
Sbjct: 7   LANLSLIVLIAIAAASDVRARRIPNWLVGSGLVAALIGQCLAQGLAAGGMAWLGGTAVGM 66

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
            +C   +A   MG GDVKL+ +   + G   +F    F   + GG+L++ ++ +R     
Sbjct: 67  GMCIGIYALGGMGAGDVKLMGAIGAFMGPFGAF-HVAFVSFLAGGVLALVMVLLRREGQR 125

Query: 130 -----------IPIFGMFVPKSFLMKNK----IPYGIAISMGGLIS 160
                      +P  G  +P     K      +PY +A + G L+ 
Sbjct: 126 SLAGVSTLLLSLPFGGKAMPSQHGEKRSSTIQLPYAVAFAAGTLLV 171


>gi|299067805|emb|CBJ39016.1| putative prepilin peptidase transmembrane protein (cpaA) [Ralstonia
           solanacearum CMR15]
          Length = 172

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 12/163 (7%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           +   L     +V AA+ D+ +  IPNR+    L + L+    +          L    + 
Sbjct: 6   ALANLSLLVLVVTAAVHDVRTRRIPNRLVAAGLAAALIAQCAVLGPVAGALAWLGGAAVG 65

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
             +C   +  + MG GDVKL+ +   + G   + L       + GG+L+V ++ +    N
Sbjct: 66  MGLCIGLYLLHGMGAGDVKLMGAIGAFTGPL-AALHVGLASCVAGGVLAVAMVALDARKN 124

Query: 129 HIPIFGMFVPKSFLMKNK-----------IPYGIAISMGGLIS 160
                    P +                 +PY +A + G L+ 
Sbjct: 125 MGMALLFSAPVADRQTQPKDSVPRGNAIRLPYAVAFAAGTLLV 167


>gi|59711118|ref|YP_203894.1| hypothetical protein VF_0511 [Vibrio fischeri ES114]
 gi|59479219|gb|AAW85006.1| hypothetical protein VF_0511 [Vibrio fischeri ES114]
          Length = 145

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 18/140 (12%)

Query: 20  VFAALSDLFSAMIPNRVS-IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           ++A   D+ +  I N +  I+M+  F       GM Y      LL  LI+  + F  F F
Sbjct: 16  IYAVFHDIKNRKISNNIVFIIMIIGFFSIFVKGGMSY------LLSPLIILFVGFILFKF 69

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           NI+  GD+K   + ++        L           +  + +    +             
Sbjct: 70  NIIAAGDIKYYAAMSLMIEQQYLLL-----------VTCIILCLGGLQAYCQYSIYKLTG 118

Query: 139 KSFLMKNKIPYGIAISMGGL 158
               ++  +PYG+AIS+G L
Sbjct: 119 NERWIERGVPYGVAISIGSL 138


>gi|220918101|ref|YP_002493405.1| peptidase A24A prepilin type IV [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955955|gb|ACL66339.1| peptidase A24A prepilin type IV [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 151

 Score = 52.6 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 13/150 (8%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           +  AA SDL S  IPN +S+ +     +            A  L+   I   +    +  
Sbjct: 1   MAVAAASDLASRRIPNALSLTVA----VAGLAASTGPLQAASGLVASAICLALMLPLWRR 56

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
             +GGGDVKLL + A W      F+ F   VA+ GG+L++ +L          +    V 
Sbjct: 57  RAIGGGDVKLLAAAAAWVRLEHLFV-FGLAVALCGGLLALIVLARASAAELRLVRANAVA 115

Query: 139 KSFLMK--------NKIPYGIAISMGGLIS 160
              + +          IPYG+AI++G  I+
Sbjct: 116 SLAMSRPAVARSAGTSIPYGVAIALGAAIA 145


>gi|329890998|ref|ZP_08269341.1| peptidase A24A prepilin type IV [Brevundimonas diminuta ATCC 11568]
 gi|328846299|gb|EGF95863.1| peptidase A24A prepilin type IV [Brevundimonas diminuta ATCC 11568]
          Length = 73

 Score = 52.2 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 104 SFLFFVAILGGILSVFILTVRMITNHIPIFG-MFVPKSFLMKNKIPYGIAISMGGLISYP 162
            F+ + A+ GG   + ++T R         G  +V +    K  IPYG+AI++G L++YP
Sbjct: 3   PFILYTALAGGGFCLLLMTARSHLPFFAQTGPGWVMRLMQPKGDIPYGVAIAIGALLAYP 62

Query: 163 DSYLFKVALMG 173
            S L    + G
Sbjct: 63  SSPLMTAYITG 73


>gi|144898051|emb|CAM74915.1| membrane protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 155

 Score = 52.2 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 17/145 (11%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    LV A++SD+ +  I +R S+ ++ +F+L     G   + +A H+   + VF    
Sbjct: 15  LLVAALVDASISDVRALRIADRDSVAVVAAFILLG-ANGWPVQELAWHVAAAVAVFAAGA 73

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             FA  + GGGDVKL  + A+  G+      FLF +A++GGI+++ +L +R         
Sbjct: 74  ALFALGVWGGGDVKLCAALALLTGFV-GLPRFLFVMAMVGGIVALAVLALRGRA------ 126

Query: 134 GMFVPKSFLMKNKIPYGIAISMGGL 158
                       ++PYG+AI+  G+
Sbjct: 127 ---------AGGQVPYGLAIAAAGM 142


>gi|332754220|gb|EGJ84586.1| type IV leader peptidase family protein [Shigella flexneri 2747-71]
 gi|333014754|gb|EGK34099.1| type IV leader peptidase family protein [Shigella flexneri K-304]
          Length = 154

 Score = 52.2 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
            L     L+F +  D+   +I +R  +V+     L      +  +    +L+    V ++
Sbjct: 11  LLFVALFLIFISWGDILLRIISHRYLLVLTVLIFLA-----LILQHQKPNLVAAGSVLLV 65

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
            F  F+  I+GGGDVKLLT  ++         +FL  +   G ++ +  L  
Sbjct: 66  GFFLFSAGIIGGGDVKLLTVLSLAID-EHELANFLVAMTFCGALVVLAGLLF 116


>gi|167767555|ref|ZP_02439608.1| hypothetical protein CLOSS21_02074 [Clostridium sp. SS2/1]
 gi|167710847|gb|EDS21426.1| hypothetical protein CLOSS21_02074 [Clostridium sp. SS2/1]
 gi|291558487|emb|CBL37287.1| Flp pilus assembly protein, protease CpaA [butyrate-producing
           bacterium SSC/2]
          Length = 167

 Score = 52.2 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L+ AA+ D     IPN+++       L+ A + GM    + + +   L+V I C   F
Sbjct: 7   LFLIMAAIYDYRDFKIPNKLNGAGALITLVLAGVSGMKAADMMIGV---LVVLISCGLLF 63

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
               +GGGDVKLL   A+  G   +   FL    I  GI +V  L  R 
Sbjct: 64  YIGCLGGGDVKLLMVCAISIG--RAMPRFLILSFICNGIYAVIFLWKRK 110


>gi|258516876|ref|YP_003193098.1| peptidase A24A domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780581|gb|ACV64475.1| peptidase A24A domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 250

 Score = 52.2 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 1/120 (0%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    L+ A++ DL+  +IPNR+ +  L + L    L   +     L   V    F++  
Sbjct: 105 LFISLLIVASVIDLYHQIIPNRIILAGLIAGLPLTALQSWEVLKSGLMAFVVGGGFLLIV 164

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
              +   MGGGD+KL     ++ G     ++F     + GG++ + ++         P+ 
Sbjct: 165 AIVSCGGMGGGDIKLGAMIGLYLGLNNLIVAFFL-AFLTGGVVGLVLMLSGRKGRKDPVP 223


>gi|159043670|ref|YP_001532464.1| peptidase A24A prepilin type IV [Dinoroseobacter shibae DFL 12]
 gi|157911430|gb|ABV92863.1| peptidase A24A prepilin type IV [Dinoroseobacter shibae DFL 12]
          Length = 169

 Score = 52.2 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 9/144 (6%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           I P CL F A SD+    IPNR  +++LG F +   L  +     A   +  + V  + F
Sbjct: 15  ILPICL-FVAWSDMKFMRIPNRSVLLLLGMFAIVGLLA-LPLLDYAWRWVHVIAVLAVGF 72

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
              +  ++G GD K   + A +     + L  + F AIL G  +        +   +P  
Sbjct: 73  VMSSAGLVGAGDAKFAAAMAPFVALQDALLVVVLFSAILLGAFA-----THRLARMLPAV 127

Query: 134 GMFVP--KSFLMKNKIPYGIAISM 155
               P  +S+  K   P G+A+S 
Sbjct: 128 RRLTPDWESWTRKRDFPMGLALSG 151


>gi|261251284|ref|ZP_05943858.1| type IV prepilin peptidase TadV/CpaA [Vibrio orientalis CIP 102891]
 gi|260938157|gb|EEX94145.1| type IV prepilin peptidase TadV/CpaA [Vibrio orientalis CIP 102891]
          Length = 152

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 16/157 (10%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M    ++   V +I   C V + +SD     +PN++   +  +  + +F  G   +    
Sbjct: 1   MNLDNIIEITVVIINIVCAVQSCISDHKHRTLPNKICKSLFITNFIASFYFGYFIQ---- 56

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
              +  I+F++    +     G GD+KLL + ++        ++ L  V  LGG      
Sbjct: 57  SATITSIIFLVLLIVWLIGGFGAGDIKLLCAFSIGIKP-ELTIACLVLVGFLGG------ 109

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
                    +      + K+ L +  IPYGI IS+ G
Sbjct: 110 -----FQLVVMYLVGLMTKTNLFEKGIPYGIPISISG 141


>gi|126455283|ref|YP_001066148.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a]
 gi|217421473|ref|ZP_03452977.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576]
 gi|237812163|ref|YP_002896614.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
           MSHR346]
 gi|126228925|gb|ABN92465.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a]
 gi|217395215|gb|EEC35233.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576]
 gi|237503315|gb|ACQ95633.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
           MSHR346]
          Length = 172

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 9/148 (6%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+  + L   AL+DL +  +      ++   +   A +        A H  +G   F + 
Sbjct: 20  LVASWTLASLALADLRTRRLATFAVALVGALYAALALVGAPGDGGFASHAALGAAAFALG 79

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              F    + GGDVKL     +W G   +     + VA   G+  + +  V +     P 
Sbjct: 80  AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRAPR 134

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
              +    F     +PYG+A++ GGL++
Sbjct: 135 VLAW----FAPARGVPYGVALAAGGLLA 158


>gi|251791993|ref|YP_003006713.1| TadV [Aggregatibacter aphrophilus NJ8700]
 gi|247533380|gb|ACS96626.1| TadV [Aggregatibacter aphrophilus NJ8700]
          Length = 142

 Score = 51.8 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 20/134 (14%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +D+ S  I NR+ +++L + +          +   L +L  L    I F  F  N++G G
Sbjct: 22  TDVRSRTIGNRIILLLLITIIPL-----SLLKYQTLFILPSLCALAIGFLLFTLNLVGAG 76

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVKL+    +       F  F F      G++ +  L  R                   +
Sbjct: 77  DVKLIAVLMLMIPNDEIFPFFFFTTFAGLGLIIISWLFFRKSV---------------KE 121

Query: 145 NKIPYGIAISMGGL 158
           N +PYG+AIS+G +
Sbjct: 122 NGLPYGVAISLGFM 135


>gi|300697745|ref|YP_003748406.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia
           solanacearum CFBP2957]
 gi|299074469|emb|CBJ54019.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia
           solanacearum CFBP2957]
          Length = 183

 Score = 51.8 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 12/153 (7%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHL-LVGLIVFIICFC 74
              V    SDL S  +PN +  V ++ S +L  F   M        + L G I       
Sbjct: 15  VLAVLIITSDLRSRRVPNWLVAVGLVLSIVLVKFGTVMALAYDWRDVWLGGAIALASFLP 74

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
            +A   MG GDVK  T   +  GW    ++     ++L G+ ++ IL +R +    P   
Sbjct: 75  LYALGWMGAGDVKFFTVAGLLAGW-HGLVAIWLVSSVLAGVHALAILLLRRVDASAPSAW 133

Query: 135 MFVP---------KSFLMKNKIPYGIAISMGGL 158
           M +               +  IPY   +++G L
Sbjct: 134 MLMRVCPALARWDPGHAGRRGIPYAAYMAIGLL 166


>gi|85859141|ref|YP_461343.1| flp pilus assembly protein, protease [Syntrophus aciditrophicus SB]
 gi|85722232|gb|ABC77175.1| flp pilus assembly protein, protease [Syntrophus aciditrophicus SB]
          Length = 180

 Score = 51.8 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 16/166 (9%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           + +  +    L+ A+++DL +  I NR++   +  F L  + L   +      L    + 
Sbjct: 10  AIIITLLVGILITASVTDLRAHRISNRLTYSTML-FGLIFYSLTAGFFGFLQSLSGLFLG 68

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
             +   F+    MG GDVKL+ +     G    F +FL   A++GGI ++ IL  +    
Sbjct: 69  LALLIVFYLVGGMGAGDVKLMAAVGSLLGPQGVFAAFL-GTALIGGIYALIILAAKGYLM 127

Query: 129 HIPIFGMFVPKSFLMKNK---IP-----------YGIAISMGGLIS 160
                 + + K+F M  K   IP           YG+AIS+G L S
Sbjct: 128 DTMKRFVLMLKTFFMTKKFIYIPPPRPEKAPLLCYGVAISLGTLAS 173


>gi|160897517|ref|YP_001563099.1| peptidase A24A prepilin type IV [Delftia acidovorans SPH-1]
 gi|160363101|gb|ABX34714.1| peptidase A24A prepilin type IV [Delftia acidovorans SPH-1]
          Length = 189

 Score = 51.8 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 1/111 (0%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIICFCFFA 77
           L   A+ DL    + N + ++ L +           +++ A + L GL+  F++   F+A
Sbjct: 15  LATIAVMDLRIRRVRNWMVLLGLATGAAALASGAQPFQVSAWNALAGLLAGFVVLLPFYA 74

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
              MG GDVK      +WFG +   L      ++L G+  + +L++R +++
Sbjct: 75  LRWMGAGDVKFGAVAGLWFGLSFDLLLIWTGGSLLAGLHGLLVLSLRHLSH 125


>gi|254297714|ref|ZP_04965167.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e]
 gi|157807942|gb|EDO85112.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e]
          Length = 172

 Score = 51.8 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 9/148 (6%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+  + L   AL+DL +  +      ++   +   A          A H  +G   F + 
Sbjct: 20  LVASWTLASLALADLRTRRLATFAVALVGALYAAQALAGAPGDGGFASHAALGAAAFALG 79

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              F    + GGDVKL     +W G   +     + VA   G+  + +  V +     P 
Sbjct: 80  AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRAPR 134

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
              +    F     +PYG+A++ GGL++
Sbjct: 135 VLAW----FAPARGVPYGVALAAGGLLA 158


>gi|83747920|ref|ZP_00944952.1| PROBABLE PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN; CpaA2 [Ralstonia
           solanacearum UW551]
 gi|83725453|gb|EAP72599.1| PROBABLE PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN; CpaA2 [Ralstonia
           solanacearum UW551]
          Length = 183

 Score = 51.8 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 12/153 (7%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC- 74
              V    SDL S  +PN +  V ++ S  L  F   M        + +G  + +  F  
Sbjct: 15  VLAVLIITSDLRSRRVPNWLVAVGLVLSIALVKFGTVMALAYDWRDVWLGGAIALAGFLP 74

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
            +A   MG GDVK  T   +  GW    ++     ++L G+ ++ IL +R      P   
Sbjct: 75  LYALGWMGAGDVKFFTVAGLLAGW-HGLVAIWLVSSVLAGVHALAILLLRRADASAPSAW 133

Query: 135 MFVP---------KSFLMKNKIPYGIAISMGGL 158
           M +               +  IPY   +++G L
Sbjct: 134 MLMRVCPALARWDPGHAGRRGIPYAAYMAIGLL 166


>gi|317498627|ref|ZP_07956920.1| type IV leader peptidase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894114|gb|EFV16303.1| type IV leader peptidase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 167

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L+ AA+ D     IPN+++       L+ A + GM    + + +   L+V I C   F
Sbjct: 7   LFLIMAAIYDYRDFKIPNKLNGAGALITLVLAGVSGMKAADMMIGV---LVVLISCGLLF 63

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
               +GGGDVKLL   A+  G   +   FL    I  GI +V  L  R 
Sbjct: 64  YIGCLGGGDVKLLMVCAISIG--RAMPRFLILSFICNGIYAVIFLWKRK 110


>gi|148976665|ref|ZP_01813352.1| hypothetical protein VSWAT3_19736 [Vibrionales bacterium SWAT-3]
 gi|145964016|gb|EDK29274.1| hypothetical protein VSWAT3_19736 [Vibrionales bacterium SWAT-3]
          Length = 176

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+    L+  ++ D+   +IPNR+ I+++  + ++    G  ++ +A+     ++ F   
Sbjct: 6   LVFWALLIVISVFDVKENIIPNRILILLVFIYFISLINGGFTWDSLAVSFFGLVVFFFSG 65

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              +    M  GDVKLL    ++ GW  S L   +F+ I  G++  F L   +  N    
Sbjct: 66  LALYFLRAMSPGDVKLLGVIGLYIGWG-SLLDVSYFILISSGVIGTFYLLYNLANNSALT 124

Query: 133 FGMFVPKSFLMKNKI 147
              +  +  ++ + +
Sbjct: 125 VKGYFQEKLMLISGM 139


>gi|153833218|ref|ZP_01985885.1| TadV [Vibrio harveyi HY01]
 gi|148870489|gb|EDL69404.1| TadV [Vibrio harveyi HY01]
          Length = 139

 Score = 51.4 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 20/150 (13%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           + ++   CL + ++ DL    I N    ++L      + L         L  +  L++  
Sbjct: 1   MLVLFIVCL-YVSIVDLLHRKIQNHTLFILLLFQCFLSPLD--------LQFITFLLMLG 51

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
                +A   +G GD+K     ++         S L   A  GG L++  L  R      
Sbjct: 52  GGLILYALIWVGAGDIKYAAVLSLVIPLKDLPWS-LVMTAFAGGFLAIIYLVSRK----- 105

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                 V  +   +  IPYGIAIS+G  + 
Sbjct: 106 -----LVTNTSNTQEGIPYGIAISIGFYLI 130


>gi|162421658|ref|YP_001604874.1| type IV prepilin peptidase family protein [Yersinia pestis Angola]
 gi|165925130|ref|ZP_02220962.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166008875|ref|ZP_02229773.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|167398990|ref|ZP_02304514.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|162354473|gb|ABX88421.1| type IV prepilin peptidase family [Yersinia pestis Angola]
 gi|165923330|gb|EDR40481.1| type IV prepilin peptidase family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992214|gb|EDR44515.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|167051494|gb|EDR62902.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua
           str. UG05-0454]
          Length = 93

 Score = 51.4 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 15/99 (15%)

Query: 60  LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
           + +++ ++   I +  F FN+MGGGDVKL+T   +      S L+F+ + A+        
Sbjct: 5   VSIIIPIVALFIGYIIFHFNVMGGGDVKLITVLLLALTAEQS-LNFIIYTAV-------- 55

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
                 +   + + G+ + +  + K  +PY +AI+ G L
Sbjct: 56  ------MGGVVMVVGLLINRVDIQKRGVPYAVAITAGFL 88


>gi|254477437|ref|ZP_05090823.1| peptidase A24A, prepilin type IV [Ruegeria sp. R11]
 gi|214031680|gb|EEB72515.1| peptidase A24A, prepilin type IV [Ruegeria sp. R11]
          Length = 168

 Score = 51.0 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 9   SAVFLIPPFCLVFA-ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
           +  FL     L F  ALSDL    IPN    ++   F++    L M +      L+    
Sbjct: 8   ALWFLPFVAPLCFVVALSDLRQMRIPNWTVDLLAAIFVIVGPFL-MSWSDYGWQLVHLPA 66

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
              + F  ++  ++G GD K   + A +  +          V I   +L    LT R++ 
Sbjct: 67  GIALGFLCYSAGMVGAGDAKFAGAAAPFVAFG----DLSIVVMIFSAMLLAGFLTHRLVK 122

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                      KS+ + +K P G+ +  G L+ Y
Sbjct: 123 YTPLRRLAPDWKSWDVGSKFPMGLCLG-GTLVVY 155


>gi|163742221|ref|ZP_02149609.1| hypothetical protein RG210_03383 [Phaeobacter gallaeciensis 2.10]
 gi|161384551|gb|EDQ08932.1| hypothetical protein RG210_03383 [Phaeobacter gallaeciensis 2.10]
          Length = 168

 Score = 51.0 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 8/148 (5%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           + P C V  AL+DL    IPN    ++   F++    L M +      LL   I   + F
Sbjct: 15  VVPLCCV-VALNDLRHMRIPNWTVDLLGAIFVIVGPFL-MSWTDYGWQLLHLPIGIGLGF 72

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             ++  ++G GD K   + A +  +          V I   +L    LT R+        
Sbjct: 73  LCYSAGMVGAGDAKFAGAAAPFVVFG----DLSVVVMIFSAMLLAGFLTHRIAKYTPLRR 128

Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISY 161
                KS+ + +K P G  + +GG + +
Sbjct: 129 LAPHWKSWDVGSKFPMG--LCLGGTLVF 154


>gi|261418359|ref|YP_003252041.1| peptidase A24A domain protein [Geobacillus sp. Y412MC61]
 gi|319767682|ref|YP_004133183.1| prepilin peptidase [Geobacillus sp. Y412MC52]
 gi|261374816|gb|ACX77559.1| peptidase A24A domain protein [Geobacillus sp. Y412MC61]
 gi|317112548|gb|ADU95040.1| Prepilin peptidase [Geobacillus sp. Y412MC52]
          Length = 251

 Score = 51.0 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 18/145 (12%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIICFCFF 76
                 +SDL   +IP+RV +V  G FL+   ++  + +  + L   VG  +  +     
Sbjct: 109 LFAIIVVSDLRYMLIPDRVLLVFAGLFLVERLVIPFLPWADMLLGAAVGFSLLWLIAVL- 167

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
           +   MGGGDVKL        GW    L+F     + G ++ +  + +  +          
Sbjct: 168 SKGGMGGGDVKLFAVLGFVLGWKMVLLAFFLAT-LYGTVIGLVGMALGRV---------- 216

Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161
                     +P+  AI++G L ++
Sbjct: 217 -----RRGKPMPFAPAIALGALTAF 236


>gi|304314578|ref|YP_003849725.1| hypothetical protein MTBMA_c08170 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588037|gb|ADL58412.1| conserved hypothetical protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 382

 Score = 51.0 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRV---SIVMLGSFLLTAFLLGMDYELIALHL 62
           M   +VF+    C  +A+ SD+   +IPNR+    I +  +F         D  +    +
Sbjct: 3   MELISVFIALIVCF-YASYSDIKRGLIPNRLTFPVIGLGLAFNALRAYTEADPWIFIYTV 61

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLF 107
           +    +F + +  +      GGDVKL T+      + PS + +  
Sbjct: 62  IFTAGIFALGYILWRMGAWAGGDVKLFTAITALLPFQPSIVDYTI 106


>gi|218676246|ref|YP_002395065.1| hypothetical protein VS_II0468 [Vibrio splendidus LGP32]
 gi|218324514|emb|CAV25986.1| putative membrane protein [Vibrio splendidus LGP32]
          Length = 152

 Score = 50.7 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 16/139 (11%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L F    D +   IPN ++ + L    L A   G     +   L + ++ F++ F  +
Sbjct: 17  LILSFICFFDGWHRKIPNNLNKIALIFSHLVALNNGY----LMSSLPIAILCFVVFFILW 72

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
              ++GGGDVKLL +  +        ++ L  +  LGG+L   +  V             
Sbjct: 73  YLKVIGGGDVKLLCALIISIQPNLVTIT-LICIGFLGGLLVFAMYIVGK----------- 120

Query: 137 VPKSFLMKNKIPYGIAISM 155
           V         IPYGI I++
Sbjct: 121 VRGLPSFTKGIPYGIPIAL 139


>gi|294495879|ref|YP_003542372.1| peptidase A24B, FlaK domain protein [Methanohalophilus mahii DSM
           5219]
 gi|292666878|gb|ADE36727.1| Peptidase A24B, FlaK domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 255

 Score = 50.7 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-----TAFLLGMDYELIAL 60
           M+  A  L+    L +A+  D+    + NRV ++ML  F        A    +   LI +
Sbjct: 1   MIVIAKILLCLGFLSYASYRDIKERRVGNRVWVIMLAVFSPFIIYELATSSSLVTYLIQM 60

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
            +  GLI F+  +  F     GG D KLL   ++ F + P+F
Sbjct: 61  AISFGLI-FVFSYVLFYLGAFGGADAKLLMVISIVFPFYPAF 101


>gi|323700357|ref|ZP_08112269.1| peptidase A24A prepilin type IV [Desulfovibrio sp. ND132]
 gi|323460289|gb|EGB16154.1| peptidase A24A prepilin type IV [Desulfovibrio desulfuricans ND132]
          Length = 182

 Score = 50.7 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 17/166 (10%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            + +     LV A ++D+ +  I N +++ ++ + L+   + G  +  +        + F
Sbjct: 4   LIVIALATALVTATVTDIRNQRIYNWLTLPLILTGLVAHTVFG-GFAGLKFSAAGFALGF 62

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
                 +   +MG GDVKL+     W G   +F +FLF   I GG+ ++ +L        
Sbjct: 63  AAMALPYFMGVMGAGDVKLMAGVGAWLGVEATFTAFLF-TCIAGGVYALAVLAFHREILK 121

Query: 130 ------------IPIFGMFVPKSFLMKNKIP---YGIAISMGGLIS 160
                             F       +N +P   YG+AI++G +++
Sbjct: 122 RVLRNITATFSVFMASRKFDFAPVTAENAMPRLCYGVAIAVGTVVA 167


>gi|302391025|ref|YP_003826845.1| peptidase A24A prepilin type IV [Acetohalobium arabaticum DSM 5501]
 gi|302203102|gb|ADL11780.1| peptidase A24A prepilin type IV [Acetohalobium arabaticum DSM 5501]
          Length = 160

 Score = 50.7 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 10/154 (6%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           + ++    L  A   D+   +IPN ++  ++   L+    +   +  +   L    +   
Sbjct: 1   MNILLGIILAVAMWIDIKDKIIPNWLTFSLMLLGLIINLSID-GWSGLLFSLQGLGVGLA 59

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL--------T 122
           I    F    +G GDVKL+       G     L  L  +AI+GGI+S+FIL         
Sbjct: 60  IFLIPFVLGGLGAGDVKLVAGIGAVKGVKFVLLDSLV-IAIVGGIISLFILIQEKKLGRM 118

Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
           ++ +   +P   +   +     +  PYG+A++ G
Sbjct: 119 IKKVIYRLPFKSLSDREDQEGNDAFPYGVAVAFG 152


>gi|218710409|ref|YP_002418030.1| hypothetical protein VS_2446 [Vibrio splendidus LGP32]
 gi|218323428|emb|CAV19605.1| hypothetical protein VS_2446 [Vibrio splendidus LGP32]
          Length = 176

 Score = 50.3 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 1/110 (0%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    L+  ++ D+    IPN++ I+    + L+ F     ++   + L   ++ F    
Sbjct: 7   VFWALLIAVSVYDVEKHRIPNKILILFFVFYFLSMFNSNYTFDSFLMSLFGSVVFFCFGL 66

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
            F+    M  GDVKLL    ++ GW    L   +F+ +  G++ VF L  
Sbjct: 67  LFYFLRAMSAGDVKLLGVVGMYLGWG-QLLDASYFILVSSGVVGVFYLLY 115


>gi|83749640|ref|ZP_00946623.1| Prepilin Peptidase; cpaA1 [Ralstonia solanacearum UW551]
 gi|207728108|ref|YP_002256502.1| prepilin peptidase protein [Ralstonia solanacearum MolK2]
 gi|207744156|ref|YP_002260548.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609]
 gi|83723701|gb|EAP70896.1| Prepilin Peptidase; cpaA1 [Ralstonia solanacearum UW551]
 gi|206591353|emb|CAQ56965.1| prepilin peptidase protein [Ralstonia solanacearum MolK2]
 gi|206595560|emb|CAQ62487.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609]
          Length = 177

 Score = 50.3 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
              L     +  AA SD+ +  IPN +    L + L+   +           L    +  
Sbjct: 7   LANLSLIVLIAIAAASDVRARRIPNWLVGSGLVAALIGQCVAQGLAAGGMAWLGGTAVGM 66

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
            +C   +    MG GDVKL+ +   + G   +F    F   + GG+L++ ++ +R     
Sbjct: 67  GMCIGIYVLGGMGAGDVKLMGAIGAFMGPFGAF-HVAFVSFLAGGVLALVMVLLRREGQR 125

Query: 130 -----------IPIFGMFVPKSFLMKN-----KIPYGIAISMGGLIS 160
                      +P  G  +P     +      ++PY +A + G L+ 
Sbjct: 126 SLAGVSTLLLSLPFGGKAMPSQQHGEKRSGTIQLPYAVAFAAGTLLV 172


>gi|330830434|ref|YP_004393386.1| Leader peptidase PilD [Aeromonas veronii B565]
 gi|328805570|gb|AEB50769.1| Leader peptidase PilD [Aeromonas veronii B565]
          Length = 127

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 21/145 (14%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            + +  +SDLF   IPN   +V+       A  +G       L L++ ++  ++    + 
Sbjct: 1   MVCWCLVSDLFERRIPNLAVLVL-------ALWVGWLLPFNPLSLVLAILTLLLGLVAYH 53

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
               G GD KLL      +G    +   L  +A  GG+LS+  L    +           
Sbjct: 54  RGWCGAGDSKLLAVCL--YGAGEQWPELLLLMAFSGGLLSLVCLIHSRL----------- 100

Query: 138 PKSFLMKNKIPYGIAISMGGLISYP 162
            +       +PYG+AI     ++ P
Sbjct: 101 -RPSPNPTTVPYGVAILWAAALTTP 124


>gi|17549312|ref|NP_522652.1| prepilin peptidase transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17431564|emb|CAD18242.1| probable prepilin peptidase transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 168

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTA-----FLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
           SDL S  +PN +  V L   ++         L  D+  + L    G I        +A  
Sbjct: 23  SDLRSRRVPNWLVAVGLVLSIVLVKFGSVVALAYDWRDVWL---GGAIALAGFLPLYALG 79

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
            MG GDVK      +  GW    ++     ++L G+ ++ IL +R      P   M + 
Sbjct: 80  WMGAGDVKFFAVAGLLAGW-HGLVAIWLVSSVLAGVHALAILLLRRADASAPAGWMLMR 137


>gi|76809350|ref|YP_333433.1| putative fimbriae assembly-like protein [Burkholderia pseudomallei
           1710b]
 gi|254258317|ref|ZP_04949371.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a]
 gi|76578803|gb|ABA48278.1| putative fimbriae assembly-related protein [Burkholderia
           pseudomallei 1710b]
 gi|254217006|gb|EET06390.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a]
          Length = 176

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 9/148 (6%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+  + L   AL+DL +  +      ++   +   A          A H  +G   F + 
Sbjct: 24  LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALG 83

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              F    + GGDVKL     +W G   +     + VA   G+  + +  V +    +P 
Sbjct: 84  AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRVPR 138

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
              +    F     +PYG+A++ GGL++
Sbjct: 139 VLAW----FAPARGVPYGVALAAGGLLA 162


>gi|209809168|ref|YP_002264706.1| type IV leader peptidase [Aliivibrio salmonicida LFI1238]
 gi|208010730|emb|CAQ81121.1| type IV leader peptidase [Aliivibrio salmonicida LFI1238]
          Length = 144

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 18/145 (12%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +      F    D+   +I NR  +++    ++   +          ++    I+FI  F
Sbjct: 11  LLAAISYFICYQDVTKRIISNRACMLVFIICIMIGVVT-----DNYENIFYPAIIFITGF 65

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             F+FNI+  GD+KL  + ++        L  +  + +LGGI+++  L  +         
Sbjct: 66  VLFSFNIIAAGDIKLAAAFSIAVNPKYQLL-VITIILLLGGIIALGQLAWKKC------- 117

Query: 134 GMFVPKSFLMKNKIPYGIAISMGGL 158
                K+    + +PYG+ I +G L
Sbjct: 118 -----KTNEKIDGVPYGVPICIGYL 137


>gi|86138001|ref|ZP_01056577.1| membrane protein, putative [Roseobacter sp. MED193]
 gi|85825593|gb|EAQ45792.1| membrane protein, putative [Roseobacter sp. MED193]
          Length = 168

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 1/97 (1%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           + P C   AA +DL S  IPN ++  +   +++    +   +      LL   I   I F
Sbjct: 18  VLPLCFA-AAYTDLSSMRIPNWITDSLGAVYVILGLFIMPSWADYGWQLLHLPIGVAIGF 76

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
            F++  +MG GD K + + A            + + A
Sbjct: 77  LFYSAGVMGAGDAKFIGAAAPLVVLADLPALIMIYTA 113


>gi|297529211|ref|YP_003670486.1| prepilin peptidase [Geobacillus sp. C56-T3]
 gi|297252463|gb|ADI25909.1| Prepilin peptidase [Geobacillus sp. C56-T3]
          Length = 248

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 18/145 (12%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIICFCFF 76
                 +SDL   +IP+RV +V  G FL+   ++  + +  + L   VG  +  +     
Sbjct: 106 LFAIIVVSDLRYMLIPDRVLLVFAGLFLVERLVIPFLPWADMLLGAAVGFSLLWLIAVL- 164

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
           +   MGGGDVKL        GW    L+F     + G ++ +  + +  +          
Sbjct: 165 SKGGMGGGDVKLFAVLGFVLGWKMVLLAFFLAT-LYGTVIGLVGMALGRV---------- 213

Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161
                     +P+  AI++G L ++
Sbjct: 214 -----RRGKPMPFAPAIALGALTAF 233


>gi|254488438|ref|ZP_05101643.1| peptidase A24A, prepilin type IV [Roseobacter sp. GAI101]
 gi|214045307|gb|EEB85945.1| peptidase A24A, prepilin type IV [Roseobacter sp. GAI101]
          Length = 164

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 6/143 (4%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           + P CL + A +D+ S  I N   I +   F++   ++ + +E    HLL  +I  ++  
Sbjct: 15  VLPLCL-YTAYTDIASMRITNPTVITLAAVFVIIGPVV-LPFETYLWHLLAMVIALVVGI 72

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
              A  +MG GD K + +         +       +A+    L    LT R+  + +   
Sbjct: 73  ILNAGGVMGAGDAKFIAAA----TPFIALGDLRLVMALFMATLLAAALTHRIAKHTVARR 128

Query: 134 GMFVPKSFLMKNKIPYGIAISMG 156
                 S+    K P G+A+   
Sbjct: 129 FAPTWTSWQQGKKFPMGLALGPA 151


>gi|323529416|ref|YP_004231568.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001]
 gi|323386418|gb|ADX58508.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001]
          Length = 176

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 10/155 (6%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             +V AA +DL    IPN +    L   LL    L          L   ++   +   F+
Sbjct: 17  ALVVAAASTDLQCRRIPNLLVGAGLFGALLVQCWLKGTGAGAMAWLTGAVVGLALFLPFY 76

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT----------VRMI 126
               M  GDVKLL     W G    F + L    I G  + V I+           +R+I
Sbjct: 77  LVRGMAAGDVKLLAMVGAWIGPLLVFYAALATCVIGGAWMLVLIVRRHQLGKVWANLRVI 136

Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            +           S      +PYG+AI+ G +   
Sbjct: 137 AHPALQGSGSARDSIDSVGSVPYGVAIAAGTIAVL 171


>gi|187250653|ref|YP_001875135.1| type II secretion system subunit O [Elusimicrobium minutum Pei191]
 gi|186970813|gb|ACC97798.1| Type II secretion system subunit [Elusimicrobium minutum Pei191]
          Length = 260

 Score = 50.3 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 27/164 (16%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF----LLGMDYELIALHL 62
           +++ V L+  + L+ +++ D+   +IP+R SI ++   L   +      G   ++    L
Sbjct: 98  IWTGVVLVVVYSLIISSVIDIKIMIIPDRFSIGLIVWGLAFFWCNPNFSGTTLQMFGQSL 157

Query: 63  LVGLIVF-------IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
           L   + F       ++ +  F    MGGGD+KL+       GW    ++ L    ++G +
Sbjct: 158 LGAAVGFGGLLAVALLGYALFRKEAMGGGDIKLMGGVGALLGW-QGVITTLVIACLIGLV 216

Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
            S+F++               V K     + IP+G  +S G L+
Sbjct: 217 YSIFLM---------------VTKRADKGSAIPFGPFLSFGALV 245


>gi|53719433|ref|YP_108419.1| putative fimbriae assembly-related protein [Burkholderia
           pseudomallei K96243]
 gi|126439772|ref|YP_001058906.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668]
 gi|52209847|emb|CAH35819.1| putative fimbriae assembly-related protein [Burkholderia
           pseudomallei K96243]
 gi|126219265|gb|ABN82771.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668]
          Length = 172

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 9/148 (6%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+  + L   AL+DL +  +      ++   +   A          A H  +G   F + 
Sbjct: 20  LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALG 79

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              F    + GGDVKL     +W G   +     + VA   G+  + +  V +     P 
Sbjct: 80  AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRAPR 134

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
              +    F     +PYG+A++ GGL++
Sbjct: 135 VLAW----FAPARGVPYGVALAAGGLLA 158


>gi|323491529|ref|ZP_08096708.1| hypothetical protein VIBR0546_18006 [Vibrio brasiliensis LMG 20546]
 gi|323314105|gb|EGA67190.1| hypothetical protein VIBR0546_18006 [Vibrio brasiliensis LMG 20546]
          Length = 172

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    L   A+SD     IPN + ++++    +    +  DY  +    + G+  FI  
Sbjct: 3   MVVWIVLFAIAVSDAKEHRIPNYLLLLVILISFINKAFVIQDYNFLLWSFVSGITCFIAA 62

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
            C +   +M  GDVKLL     W G +   L  ++++AI   ++  F   +R+  + 
Sbjct: 63  LCLYFLKVMAPGDVKLLGVIGFWLG-SEHILGAVYWIAISSVVIGGFYALLRLAESP 118


>gi|307726372|ref|YP_003909585.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1003]
 gi|307586897|gb|ADN60294.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1003]
          Length = 176

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 14/155 (9%)

Query: 19  LVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
           +V AA +D+    IPN +    ++ + ++  +L G+    IA  L      F +   F+ 
Sbjct: 19  VVAAASTDMQCRRIPNLLVGAGLISALIVQCWLKGIGAGAIAW-LAGAGTGFALFLPFYL 77

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT-----------VRMI 126
              M  GDVKLL     W G    F + L    ++GG+  + ++            +R+I
Sbjct: 78  VRGMAAGDVKLLAMVGAWIGPLLVFYAALV-TCVVGGVWMLALIARRHQWGKVWANLRVI 136

Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            +           S      +PYG+AI+ G +   
Sbjct: 137 AHPALQGPGTARDSIESVGSVPYGVAIAAGTITVL 171


>gi|212635456|ref|YP_002311981.1| peptidase A24A, prepilin type IV [Shewanella piezotolerans WP3]
 gi|212556940|gb|ACJ29394.1| Peptidase A24A, prepilin type IV [Shewanella piezotolerans WP3]
          Length = 187

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 18/177 (10%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           +I     V A  SDL    IPN + ++ +   F + ++   +    + +  +   + FI+
Sbjct: 11  VIAGVFFVLAISSDLSKERIPNWLCLLAIFLGFAVNSYFAQLS--GLLVSFVGFSLAFIL 68

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV-------- 123
            F  F   I+G GD+KL+       G  P+ L++    A++ G L+  +L          
Sbjct: 69  LFPTFILRILGAGDIKLMMGIGAIMG--PTLLAWSILYAVIAGALTSILLIAWKTGLSGI 126

Query: 124 -----RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
                R              +      K+PY  A+++G L +   +         +S
Sbjct: 127 KKTAKRYWDCFYLRTYFKPEQGEAAGEKVPYAPALALGWLWACSLNPQISQLYNSIS 183


>gi|323702303|ref|ZP_08113969.1| Prepilin peptidase [Desulfotomaculum nigrificans DSM 574]
 gi|323532793|gb|EGB22666.1| Prepilin peptidase [Desulfotomaculum nigrificans DSM 574]
          Length = 244

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+    L+  +  DL   +IP+++    + +++     + ++Y    + L+      ++ 
Sbjct: 99  LLFIATLIVISFIDLDHYIIPDKILFFFIVAWVAFIPFIPINYINSLIGLVSAGG-LLLF 157

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
               +   MGGGD+KL     ++ GW  + L+      + G +  + IL 
Sbjct: 158 IALLSKGGMGGGDIKLAAVIGLYLGWPNALLAMFLACFLAGIVGILLILL 207


>gi|239817410|ref|YP_002946320.1| peptidase A24A prepilin type IV [Variovorax paradoxus S110]
 gi|239803987|gb|ACS21054.1| peptidase A24A prepilin type IV [Variovorax paradoxus S110]
          Length = 165

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 2/139 (1%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FII 71
           +     L+   + D     IPN + +                        L G    F  
Sbjct: 3   IAFLLWLILVVVYDFRMRRIPNWLVLAGAALAFAALATGAGPLGQDWQAALFGAGAGFAT 62

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
              F+A  +MG GDVK   +  +W G  P+  S     +++ G  S+  L ++       
Sbjct: 63  LLLFYATGLMGAGDVKFAGALGLWVGL-PALASIWIVASLVAGAHSILWLALKRWPFFPR 121

Query: 132 IFGMFVPKSFLMKNKIPYG 150
           +  +    S + ++ IP G
Sbjct: 122 LALVLAGPSRVPESGIPSG 140


>gi|209546486|ref|YP_002278404.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537730|gb|ACI57664.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 178

 Score = 49.9 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL---- 62
           +   +  +     ++AA +D  +  IPN V + ++  ++L A  + +  E +   L    
Sbjct: 4   LVVVINYLSVLLFLYAAWTDFRTWKIPNTVVLALVTLYVLRAVAVILSSEDVGAALFASS 63

Query: 63  ------LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
                   GL++F++    +A  + G GD KL     ++ GW  S L F FF+ +LG I+
Sbjct: 64  GIGGDVGAGLLMFMLGVVLWALRLFGAGDAKLFLPIGLFVGW-HSMLPFSFFLLVLG-IV 121

Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
           ++  L + +      +             K+PYG+ +    L++ 
Sbjct: 122 TLLALRLPVPLPVAHLAFFMRIAEIRASRKVPYGVVMVFAVLLTL 166


>gi|325108088|ref|YP_004269156.1| peptidase A24A prepilin type IV [Planctomyces brasiliensis DSM
           5305]
 gi|324968356|gb|ADY59134.1| peptidase A24A prepilin type IV [Planctomyces brasiliensis DSM
           5305]
          Length = 182

 Score = 49.5 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 19/171 (11%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    L+ AA  D     +PN ++  M+ S L+   ++   +  +   L    +  +   
Sbjct: 14  VVALILIVAAWIDGKELRVPNWITFPMILSGLVYCSVMN-GWIGLGEGLWGMTVGLLTLL 72

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             +A   MG GDVKL+     W G T ++ +F   V I+G ++++ ++  R         
Sbjct: 73  PLYAVGGMGAGDVKLMAGIGAWLGATVTWYAFCVSV-IVGAVMAIIMVLYRRSWEKHYNN 131

Query: 134 GMFVPKSFLMKNK-----------------IPYGIAISMGGLISYPDSYLF 167
            + +   F+   K                 +PYGI I +G +  +  + + 
Sbjct: 132 FLVIIMEFITVKKPEKLYAIAAERKPNMLLLPYGIPICIGSIAYFFYTGMI 182


>gi|126737246|ref|ZP_01752981.1| hypothetical protein RSK20926_12464 [Roseobacter sp. SK209-2-6]
 gi|126721831|gb|EBA18534.1| hypothetical protein RSK20926_12464 [Roseobacter sp. SK209-2-6]
          Length = 168

 Score = 49.5 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 5/149 (3%)

Query: 8   FSAVFLIPPFCLVFAA-LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +  FL     L +AA L+DL    IPN ++  +   ++L    +   +      LL   
Sbjct: 10  AALWFLPFVLPLCYAAALTDLRGMRIPNWINDSLAAVYVLVGLFVMPTWADYGWQLLHLP 69

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
           I     F F++  ++G GD K   + A +  ++        F A L    +    T R++
Sbjct: 70  IGIAFGFLFYSSGMIGAGDAKFAGAAAPFIAFSDLPALMTIFCANLLAAFA----THRLV 125

Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
            +          KS+   +K P G+ +  
Sbjct: 126 KHTGLRRLAPGWKSWNTGSKFPMGLCLGA 154


>gi|239827894|ref|YP_002950518.1| peptidase A24A domain protein [Geobacillus sp. WCH70]
 gi|239808187|gb|ACS25252.1| peptidase A24A domain protein [Geobacillus sp. WCH70]
          Length = 248

 Score = 49.5 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 16/144 (11%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            L+   +SD+   MIP++V +V    FLL    +       AL       + +      +
Sbjct: 105 LLMIIFVSDVRYMMIPDKVLLVFAAIFLLERLFIPFIPWRDALVGAAAGFLLLFLIAVIS 164

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
              MGGGD+KL        GW    L+F F     G ++ +  + +  +    P      
Sbjct: 165 KGGMGGGDIKLFALLGFVLGWKTVLLAFFFST-FYGTVIGLIGMALGKVRRREP------ 217

Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161
                    +P+G AI +G L +Y
Sbjct: 218 ---------MPFGPAIVLGSLTAY 232


>gi|86360578|ref|YP_472466.1| putative cpaA pilus assembly protein [Rhizobium etli CFN 42]
 gi|86284680|gb|ABC93739.1| putative cpaA pilus assembly protein [Rhizobium etli CFN 42]
          Length = 181

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 12/164 (7%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL---- 62
           +   V  +     ++AA +D  S  IPN V + ++  + L A    +  E +   L    
Sbjct: 7   MIVVVNSLSVLLFLYAAWTDFRSWKIPNAVVLALMTVYALRAVAAMLGSEDLGAALFASS 66

Query: 63  ------LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
                   GL++F++    +AF + G GD KL     ++ GW          + +  G++
Sbjct: 67  GIGGDVGAGLLMFMLGVALWAFRLFGAGDAKLFLPIGLFVGWHGMLPFSFLLLVL--GVM 124

Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
           ++  L + +  +   +      +      KIPYG+ +    L++
Sbjct: 125 TLLALRLPVPLSVAHLAFFMRIEEIRASRKIPYGVIMVFATLLT 168


>gi|148979563|ref|ZP_01815594.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrionales bacterium SWAT-3]
 gi|145961747|gb|EDK27043.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrionales bacterium SWAT-3]
          Length = 289

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 7/126 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
           +++   +   F L+ A   DL + ++P+++++ ++ S +  A   +  +  +   +  + 
Sbjct: 128 LYAIALIFFTFALITATFIDLDTMLLPDQITLPLVWSGIALALFNISPVSLQDSVVGAMA 187

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW       +   +++G +  +  
Sbjct: 188 GYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QHLPMIILLSSLVGLVFGLIQ 246

Query: 121 LTVRMI 126
           L ++  
Sbjct: 247 LRLKQQ 252


>gi|84393981|ref|ZP_00992720.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio splendidus 12B01]
 gi|84375375|gb|EAP92283.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio splendidus 12B01]
          Length = 289

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
           +   +   F L+ A   DL + ++P+++++ ++ S +  A   +  +  +   +  + G 
Sbjct: 130 AIALIFFTFALITATFIDLDTMLLPDQITLPLVWSGIALALFNISPVSLQDSVIGAMAGY 189

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     +  F        MG GD KLL +   W GW       +   +++G +  +  L 
Sbjct: 190 LALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QHLPMIILLSSLVGLVFGLIQLR 248

Query: 123 VRMI 126
           ++  
Sbjct: 249 LKQQ 252


>gi|312110054|ref|YP_003988370.1| prepilin peptidase [Geobacillus sp. Y4.1MC1]
 gi|311215155|gb|ADP73759.1| Prepilin peptidase [Geobacillus sp. Y4.1MC1]
          Length = 248

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 16/144 (11%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            L+   +SD+   MIP++V +V    FL     +       AL       + +      +
Sbjct: 105 LLMIIFVSDVRYMMIPDKVLLVFAVIFLFERLFIPFLPWRDALIGAAAGFLLLFLIAVIS 164

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
              MGGGD+KL        GW    L+F F   I G  + +  + +  +    P      
Sbjct: 165 KGGMGGGDIKLFALLGFVLGWKTVLLAFFFST-IYGTAIGLIGMALGKVRRREP------ 217

Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161
                    +P+G AI +G L +Y
Sbjct: 218 ---------MPFGPAIVLGSLTAY 232


>gi|91772142|ref|YP_564834.1| peptidase A24B, FlaK-like [Methanococcoides burtonii DSM 6242]
 gi|91711157|gb|ABE51084.1| preflagellin peptidase FlaK [Methanococcoides burtonii DSM 6242]
          Length = 252

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLL 63
           M+     L+    L+++  SD+ +  + N++  +MLG+        +       +   L+
Sbjct: 1   MIELLKVLVCLLFLLYSCYSDIKTRRVTNKLWPIMLGAAAPLIIYDIARYGIPYVKWTLI 60

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
             + +F+  +  F F   GG D K+L   ++     P+ 
Sbjct: 61  SFIFIFVFVYILFYFGAFGGADAKILMVISLILPIYPAL 99


>gi|294102193|ref|YP_003554051.1| peptidase A24A prepilin type IV [Aminobacterium colombiense DSM
           12261]
 gi|293617173|gb|ADE57327.1| peptidase A24A prepilin type IV [Aminobacterium colombiense DSM
           12261]
          Length = 158

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 15/150 (10%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L +A   DL    +PN     +    LL A L    Y  +++ L    I        +
Sbjct: 7   AVLCWAGFYDLKYKKVPNW----LTYGLLLAAILFHSFYGAVSMSLFGAGIGLGWFLIPY 62

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR----------MI 126
               MG GDVKLL +        P  L  + + ++ GGI+ + +   R            
Sbjct: 63  LLGGMGAGDVKLLAAAGA-MAAWPGALYVVLYSSVAGGIVVIALTLKRVDFQDFWVALAG 121

Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
                   +++      K K+PY +AI++G
Sbjct: 122 GPRRFFKSIWMSGRERRKEKVPYALAIAIG 151


>gi|218710511|ref|YP_002418132.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio splendidus LGP32]
 gi|218323530|emb|CAV19721.1| Type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio splendidus LGP32]
          Length = 289

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
           +   +   F L+ A   DL + ++P+++++ ++ S +  A   +  +  +   +  + G 
Sbjct: 130 AIALIFFTFALIAATFIDLDTMLLPDQITLPLVWSGIALALFNISPVSLQDSVVGAMAGY 189

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     +  F        MG GD KLL +   W GW       +   +++G +  +  L 
Sbjct: 190 LALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QHLPMIILLSSLVGLVFGLIQLR 248

Query: 123 VRMI 126
           ++  
Sbjct: 249 LKQQ 252


>gi|90411987|ref|ZP_01219994.1| putative leader peptidase PilD [Photobacterium profundum 3TCK]
 gi|90326965|gb|EAS43344.1| putative leader peptidase PilD [Photobacterium profundum 3TCK]
          Length = 299

 Score = 49.1 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 4   SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALH 61
              +++   +   F L+     D+ + ++P+++++ ++ + +  A   L  +  +   + 
Sbjct: 135 PPSLWAVAVIFFSFALIALTFIDIDTMLLPDQITLPLMWAGIAAALVGLSPVSLQDAIIG 194

Query: 62  LLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
            +VG +     F  F        MG GD KLL +   W GW  S    +   +++G +  
Sbjct: 195 AMVGYLSLWSLFWCFKLITGKEGMGYGDFKLLAALGAWLGW-QSLPFVVLLSSLVGAVCG 253

Query: 118 VFILTVRMITNHIPI 132
           + +L V+   +  P 
Sbjct: 254 IILLRVQRSDSQTPF 268


>gi|302390457|ref|YP_003826278.1| type 4 prepilin peptidase 1 [Thermosediminibacter oceani DSM 16646]
 gi|302201085|gb|ADL08655.1| type 4 prepilin peptidase 1 [Thermosediminibacter oceani DSM 16646]
          Length = 251

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 16/149 (10%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           +L     L+ AA  DL   +IP+R+ +    + ++  F         +L        F+ 
Sbjct: 102 YLFLGAVLIAAAFIDLEHYLIPDRLVLAGFAAAIVLGFAARDVGVWSSLAGSAAGAGFLF 161

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
               F+   MG GDVKL     ++ GW P     LF   I GG+++  +L  R+      
Sbjct: 162 AIVVFSKGGMGCGDVKLAAVAGLFIGW-PLAALALFLAVITGGLVAAVLLLFRLKGP--- 217

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                       K+ IP+G  I+ G L +
Sbjct: 218 ------------KDAIPFGPFIAAGTLAA 234


>gi|107028251|ref|YP_625346.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054]
 gi|116687162|ref|YP_840409.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424]
 gi|105897415|gb|ABF80373.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054]
 gi|116652877|gb|ABK13516.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424]
          Length = 179

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 16/161 (9%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L      V AA +D+ +  IPNR+ ++ L   L+   LL      +   L      F + 
Sbjct: 12  LCVTLLAVAAASTDIATRRIPNRLVLLGLAGALVAQCLLQGVPAGVLGWLAGAATGFGLL 71

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-------- 124
             F+    M  GDVKL+ +   W G   +F   +    + GGI ++    +R        
Sbjct: 72  LPFYLLRGMAAGDVKLMLAIGAWVGAEMTFY-IVLATFLAGGIGAIAYALLRGRMRQMWT 130

Query: 125 -------MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
                    +          P        +PYG+AI++G L
Sbjct: 131 NVRTLIVRRSQAARAEADDGPVEIASVGTLPYGVAIAVGTL 171


>gi|197295150|ref|YP_002153691.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia
           J2315]
 gi|195944629|emb|CAR57233.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia
           J2315]
          Length = 179

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 16/161 (9%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L      V AA +D+ +  IPNR+ ++ L   L+   LL      +   L      F + 
Sbjct: 12  LCVTLLAVAAASTDIATRRIPNRLVLLGLVGALIAQCLLHGVPAGVLGWLAGAATGFGLL 71

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-------- 124
             F+    M  GDVKL+ +   W G   +F   +    + GGI ++    +R        
Sbjct: 72  LPFYLLRGMAAGDVKLMLAIGAWVGAEMTFY-IVLATFLAGGIGAIAYALLRGRMRQMWA 130

Query: 125 -------MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
                    +          P        +PYG+AI+ G L
Sbjct: 131 NVRTLIVRRSPAARAEADDGPAGITSVGTLPYGVAIAAGTL 171


>gi|170734871|ref|YP_001773985.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3]
 gi|169820909|gb|ACA95490.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3]
          Length = 179

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 16/161 (9%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L      V AA +D+ S  IPNR+ ++ L   L+   LL      +   L      F + 
Sbjct: 12  LCVTLLAVAAASTDIASRRIPNRLVLLGLAGALVAQCLLHGVPAGVLGWLAGAATGFGLL 71

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
             F+    M  GDVKL+ +   W G   +F   +    + GGI ++    +R     +  
Sbjct: 72  LPFYLLRGMAAGDVKLMLAIGAWVGAEMTFY-IVLATFLAGGIGAIAYALLRGRMRQVWT 130

Query: 133 FGMFV---------------PKSFLMKNKIPYGIAISMGGL 158
               +               P        +PYG+AI++G L
Sbjct: 131 NVRTLIVRRSQAARAEADDGPVEIASVGTLPYGVAIAVGTL 171


>gi|328470515|gb|EGF41426.1| hypothetical protein VP10329_06942 [Vibrio parahaemolyticus 10329]
          Length = 147

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 16/138 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
             D+   ++ +R  +++  + LL+ F            L V   VFI  F  +  NI+GG
Sbjct: 21  YGDIRYRIVKHRFLLIIFITSLLSLFFT----PEPLTQLAVSSSVFICFFILWLINIVGG 76

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GDVKL+ +  +        L+ +  + +LGGI  + +  + +     P            
Sbjct: 77  GDVKLIGALFLGVN-DEYMLAAIVAIGLLGGIQILVMWLMSVYRKKTPF----------- 124

Query: 144 KNKIPYGIAISMGGLISY 161
           +N IPY I I + GL  +
Sbjct: 125 ENGIPYTIPIGISGLFFF 142


>gi|223984525|ref|ZP_03634657.1| hypothetical protein HOLDEFILI_01952 [Holdemania filiformis DSM
           12042]
 gi|223963511|gb|EEF67891.1| hypothetical protein HOLDEFILI_01952 [Holdemania filiformis DSM
           12042]
          Length = 247

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + + +  +    L+  A+ DL +  IP+R+S+ +L    L    L ++   I   +L  L
Sbjct: 98  LTAVLHCLFLSILIVIAMIDLDTMEIPDRLSVFILI---LAVIALALEPSSIPSRILGAL 154

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           I+ +  +     N MGGGDVK++ +   + G  P  L+     + +G I +++++ 
Sbjct: 155 IISVPFWILSRLNAMGGGDVKIMCAAGFYLG-APLVLTAFVLSSFIGAIAALYLMI 209


>gi|319941904|ref|ZP_08016225.1| hypothetical protein HMPREF9464_01444 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804557|gb|EFW01427.1| hypothetical protein HMPREF9464_01444 [Sutterella wadsworthensis
           3_1_45B]
          Length = 151

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 19/140 (13%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA-FNIM 81
           + SDL    IPN  ++++  + ++ A++ G   +   L  +    + ++ F   A   ++
Sbjct: 26  SWSDLTKREIPNAAAVLLGLTAVVDAWIGGSPLQAGWLGCI---SILLVGFPVSAYLGLI 82

Query: 82  GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
           G GD+KLL + A+W   +   L  L   A  GG+L++  L + ++               
Sbjct: 83  GAGDIKLLAAAALW--TSARTLDLLLITAWAGGVLALLYLCLNLVRTR------------ 128

Query: 142 LMKNKIPYGIAISMGGLISY 161
               +IPYG+A+S+  L+  
Sbjct: 129 -RTTEIPYGVAVSLSLLLML 147


>gi|86144321|ref|ZP_01062653.1| putative membrane protein [Vibrio sp. MED222]
 gi|85837220|gb|EAQ55332.1| putative membrane protein [Vibrio sp. MED222]
          Length = 152

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 16/139 (11%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L F    D +   IPN ++ + L    + A   G     +   L + ++ F++ F  +
Sbjct: 17  LILSFVCFFDGWHRKIPNNLNKIALIFSNIVALNNGY----LMSSLPIAILCFVVFFILW 72

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
              ++G GDVKLL   A+  G  P+ ++         G   VF + +      +P F   
Sbjct: 73  YLKVIGAGDVKLL--CALIIGIQPNLVTITLICIGFLGGFLVFAMYIVGKVRGLPSF--- 127

Query: 137 VPKSFLMKNKIPYGIAISM 155
                     IPYGI I+M
Sbjct: 128 -------TKGIPYGIPIAM 139


>gi|86148308|ref|ZP_01066603.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio sp. MED222]
 gi|85833933|gb|EAQ52096.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio sp. MED222]
          Length = 289

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
           +   +   F L+ A   DL + ++P+++++ ++ S +  A   +  +  +   +  + G 
Sbjct: 130 AIALIFFTFALIAATFIDLDTMLLPDQITLPLVWSGIALALFNISPVSLQDSVVGAMAGY 189

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     +  F        MG GD KLL +   W GW       +   +++G +  +  L 
Sbjct: 190 LALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QHLPMIILLSSLVGLVFGLTQLR 248

Query: 123 VRMI 126
           ++  
Sbjct: 249 LKQQ 252


>gi|23098072|ref|NP_691538.1| leader peptide processing enzyme [Oceanobacillus iheyensis HTE831]
 gi|22776297|dbj|BAC12573.1| leader peptide processing enzyme (late competence protein)
           [Oceanobacillus iheyensis HTE831]
          Length = 251

 Score = 48.7 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 16/139 (11%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
            +SD    +IPN++ +  L  F++   LL +D               I      +   MG
Sbjct: 114 CISDFIYMVIPNKLLLFFLPIFIILRLLLPLDPWWSMFTGAAIGFGIIFLIILISRGGMG 173

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
            GD+KLL    +  G     L+F     I+G ++S+ +L+V +I  + P           
Sbjct: 174 AGDMKLLGLAGIVLGVEKIILAFFLAC-IIGSVISIVLLSVHLIQRNKPF---------- 222

Query: 143 MKNKIPYGIAISMGGLISY 161
                P+G  I++G LISY
Sbjct: 223 -----PFGPFIAIGILISY 236


>gi|85705160|ref|ZP_01036260.1| membrane protein, putative [Roseovarius sp. 217]
 gi|85670482|gb|EAQ25343.1| membrane protein, putative [Roseovarius sp. 217]
          Length = 166

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 8/156 (5%)

Query: 3   ESKMVFSAVFLIPPFCL---VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA 59
             ++   A     PF L   V+ A SDL    IPN   + ++G FL+   +  +      
Sbjct: 2   TLEITAQAALWFLPFVLPVCVWVAWSDLSRMKIPNTAVLTLVGIFLVVGLIA-LPISDYP 60

Query: 60  LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
             L    ++ +      A  +MG GD K + + A +     +    L F A L G     
Sbjct: 61  WRLAHLAVMLVAGIAMNAAGLMGAGDAKFIAAAAPFVALGDAATLCLIFAATLLGAF--- 117

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
            +T R+I            +S+    K P G A+  
Sbjct: 118 -VTHRVIKYSPLRRLAPDWQSWNTGKKFPMGFALGG 152


>gi|20091920|ref|NP_617995.1| hypothetical protein MA3102 [Methanosarcina acetivorans C2A]
 gi|19917119|gb|AAM06475.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 272

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 6/137 (4%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPN--RVSIVMLGSFLLTAFLLGMDYELIALHLL 63
           M+     L     L+++  SDL +  + N     +++ GS  +   L       +    L
Sbjct: 19  MIEILKILFAMAFLLYSCYSDLKARRVSNGVWKYMLVSGSVFVIYELFTGGTPYLKALFL 78

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG----GILSVF 119
            G++VFI  +  F     GGGD K L   ++ F   P F        +LG    G+ ++ 
Sbjct: 79  SGVVVFISVYILFHLGAFGGGDAKGLLVLSILFPLYPIFQFSGEAYPLLGRPLIGLFTLT 138

Query: 120 ILTVRMITNHIPIFGMF 136
           +L   ++   +   GMF
Sbjct: 139 VLGNALLLTALIPLGMF 155


>gi|296331648|ref|ZP_06874117.1| membrane protease and transmethylase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675393|ref|YP_003867065.1| membrane protease and transmethylase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151243|gb|EFG92123.1| membrane protease and transmethylase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413637|gb|ADM38756.1| membrane protease and transmethylase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 248

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 16/149 (10%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    L+  A++D+   +IPNR+ I  L        +  +D   ++L       +F+  
Sbjct: 100 VVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYVSLLGAAAGFLFLTL 159

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
                   +GGGD+KL        G      +F F V I     +  +LT R        
Sbjct: 160 IAAITHGGIGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAATVLTGR-------- 211

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                      +  +P+  AI+ G +++Y
Sbjct: 212 --------LAKRQPLPFAPAIAAGSILAY 232


>gi|323495635|ref|ZP_08100706.1| type IV leader peptidase [Vibrio sinaloensis DSM 21326]
 gi|323319270|gb|EGA72210.1| type IV leader peptidase [Vibrio sinaloensis DSM 21326]
          Length = 134

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 17/136 (12%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
             +DL   ++ N+  +++ G    + FL         +HL+   +V I   C +   + G
Sbjct: 9   GWNDLQHRVVKNKSVLLLAGILAFSIFLF-----DSKIHLIQASLVLISGMCLWKVGVFG 63

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
            GD+KL +  A++     S L  LF + ++GG+ ++  L +R    H+           +
Sbjct: 64  AGDIKLASVFAIFIAPDYSLL-VLFLMLVIGGVEALLYLLIRTTYPHL-----------I 111

Query: 143 MKNKIPYGIAISMGGL 158
               IP+ I I + G 
Sbjct: 112 RHGGIPFAIPIVISGF 127


>gi|126438727|ref|YP_001058804.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668]
 gi|126218220|gb|ABN81726.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668]
          Length = 166

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 2/125 (1%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIICFCFFAFNIMGGG 84
           D     IPN + +V L + ++        +       LVG  V  +  F FFA  +MG  
Sbjct: 21  DCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALVGGAVGLVSLFPFFALRVMGAA 80

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVK+      W G  P+        +I  G+ ++ ++ +          G     +   +
Sbjct: 81  DVKVFAVLGAWCGL-PALPRLWVVASIAAGVHALALMLLTRTPPGSLGRGGAPAFALGAR 139

Query: 145 NKIPY 149
              PY
Sbjct: 140 RAAPY 144


>gi|84501668|ref|ZP_00999840.1| hypothetical protein OB2597_15740 [Oceanicola batsensis HTCC2597]
 gi|84390289|gb|EAQ02848.1| hypothetical protein OB2597_15740 [Oceanicola batsensis HTCC2597]
          Length = 163

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 6/151 (3%)

Query: 7   VFSAVFLIPPFCL-VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           V + +FL     + ++ + +DL    IPN   + +   F++    + + +E+    L+  
Sbjct: 7   VAARLFLPFVLLIGLYVSWTDLKGMRIPNASVVTLALVFVVLGPFV-LPFEIYGWRLVHL 65

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           ++V ++ F      +MG GD K L + A +       L F+   A +    +    T R 
Sbjct: 66  VVVLVLGFALTVAGVMGAGDAKFLAAAAPYVALVDLRLMFMLLAATMLAAFA----THRA 121

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
             +          +S+      P G A+S  
Sbjct: 122 AKHTALRRLAPDWESWERSRDFPMGTALSTA 152


>gi|149188866|ref|ZP_01867156.1| hypothetical protein VSAK1_05935 [Vibrio shilonii AK1]
 gi|148837286|gb|EDL54233.1| hypothetical protein VSAK1_05935 [Vibrio shilonii AK1]
          Length = 141

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
             L+  F  +  A+ D     I N + +V+L      +           + +   L+V  
Sbjct: 2   YLLVLMFVCLVIAIVDFLYRKIHNYMLLVLLLVQCFLSPSD--------IQITTFLLVLG 53

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           I    ++   +G GD+K     ++         +++     +GGI+++            
Sbjct: 54  IGLLVYSLIWIGAGDIKYAAILSLAIPLDYLPWAYII-TGFVGGIIAM----------TY 102

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGG-LISYPDSYL 166
            I    +   +  +  IPYGIAIS+G  L+ +  S L
Sbjct: 103 WISKKILGNKYHKQEGIPYGIAISVGFYLVIFTQSAL 139


>gi|28900573|ref|NP_800228.1| hypothetical protein VPA0718 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28808953|dbj|BAC62061.1| putative membrane protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 147

 Score = 48.3 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 16/138 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
             D+   ++ +R  +++  + LL+ F            L V   VFI  F  +  NI+GG
Sbjct: 21  YGDIRYRIVKHRFLLIIFITSLLSLFFT----PEPLTQLAVSTSVFICFFILWLINIVGG 76

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GDVKL+    +        L+ +  + +LGGI  + +  + +     P            
Sbjct: 77  GDVKLIGVLFLGVN-DEYMLAAIVAIGLLGGIQILVMWLMSVYRKKTPF----------- 124

Query: 144 KNKIPYGIAISMGGLISY 161
           +N IPY I I + GL  +
Sbjct: 125 ENGIPYTIPIGISGLFFF 142


>gi|218660281|ref|ZP_03516211.1| putative cpaA pilus assembly protein [Rhizobium etli IE4771]
          Length = 171

 Score = 48.0 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 12/158 (7%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL----------L 63
           +     ++AA +D  +  IPN + + ++  + L A  + +  E +   L           
Sbjct: 11  LSVLLFLYAAWTDFRTWKIPNTIVLALVTLYALRAVAVMLGSEDVGAALFASSGIGGDVG 70

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
            GL++F++    + F + G GD KL     ++ GW    L F F + +LG +  + +   
Sbjct: 71  AGLLMFMLGVVLWVFRLFGAGDAKLFLPIGLFVGW-HGMLPFSFLLLVLGIVTLLVLRLP 129

Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
             +      F M + +    +  IPYG+ +    L++ 
Sbjct: 130 VPLRVAHFAFFMRIEEIRASRK-IPYGVLMVFAALLTL 166


>gi|78060317|ref|YP_366892.1| peptidase A24A, prepilin type IV [Burkholderia sp. 383]
 gi|77964867|gb|ABB06248.1| Peptidase A24A, prepilin type IV [Burkholderia sp. 383]
          Length = 180

 Score = 48.0 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 17/162 (10%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L      V AA +D+ +  IPNR+ ++ L   L++  +L      +   L      F + 
Sbjct: 12  LCVTLLAVAAASTDIATRRIPNRLVLLGLAGALVSQCMLHGVLAGVLGWLAGAATGFALL 71

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
             F+    M  GDVKL+ +   W G   +F   +    + GGI ++    +R     +  
Sbjct: 72  LPFYLLRGMAAGDVKLMLAIGAWVGAEMTFY-IVLATFLAGGIGAIAYALLRGRMRQMWA 130

Query: 133 FGMFVPKSFLMK----------------NKIPYGIAISMGGL 158
               +      +                  +PYG+AI+ G L
Sbjct: 131 NVRALIARRRSQGASDEAAGSPVEIASVGTLPYGVAIAAGTL 172


>gi|89098961|ref|ZP_01171841.1| signal peptidase (late competence protein) [Bacillus sp. NRRL
           B-14911]
 gi|89086365|gb|EAR65486.1| signal peptidase (late competence protein) [Bacillus sp. NRRL
           B-14911]
          Length = 247

 Score = 48.0 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 16/144 (11%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            LV   +SD+   +IP++V +V    FLL    + +     +          ++     +
Sbjct: 105 LLVIVFVSDIKYMIIPDKVLLVFAVIFLLERIFIPLSPWWDSAAGAAAGFFLLLFIAVVS 164

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
              MGGGD+KL     +  G     L+F     + G    +  L    I           
Sbjct: 165 KGGMGGGDIKLFAVIGLALGTKLVLLTFFLAT-LFGAFFGIAGLLAGKIE---------- 213

Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161
                    IP+G  I++G L +Y
Sbjct: 214 -----KGKPIPFGPYIALGCLTAY 232


>gi|251767752|ref|ZP_04820240.1| peptidase A24A, prepilin type IV [Burkholderia mallei PRL-20]
 gi|254197207|ref|ZP_04903629.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13]
 gi|169653948|gb|EDS86641.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13]
 gi|243061825|gb|EES44011.1| peptidase A24A, prepilin type IV [Burkholderia mallei PRL-20]
          Length = 183

 Score = 48.0 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL-IALHLLVGLIVFIICFCFFAFNIMGGG 84
           D     IPN + +V L + ++        +   ++  L+ G +  +  F FFA  +MG  
Sbjct: 38  DCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALIGGAVGLVSLFPFFALRVMGAA 97

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVK+      W G + +        ++  G+ ++ ++ +          G     +   +
Sbjct: 98  DVKVFAVLGAWCGLS-ALPRLWVVASVAAGVHALALMLLTRTPPGSLGRGGAPAFALGAR 156

Query: 145 NKIPY 149
              PY
Sbjct: 157 RAAPY 161


>gi|15678449|ref|NP_275564.1| hypothetical protein MTH421 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|3219875|sp|O26521|Y421_METTH RecName: Full=Uncharacterized protein MTH_421
 gi|2621485|gb|AAB84927.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 385

 Score = 48.0 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 11  VFLIPPFCLV--FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG--- 65
           +  +    L   +A+ SD+   +IPNR++  ++G  LL      +      + +      
Sbjct: 8   LLSVFIALLACFYASYSDIKRGIIPNRLTFPVIGLGLLLNGARALMESDPWIFIYTAIFT 67

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
             +F + +  +      GGDVKL T+      + PS +S+ F     
Sbjct: 68  AGIFALGYILWRMVAWAGGDVKLFTAVTSLLPFQPSLVSYSFLGTAF 114


>gi|317129791|ref|YP_004096073.1| prepilin peptidase [Bacillus cellulosilyticus DSM 2522]
 gi|315474739|gb|ADU31342.1| Prepilin peptidase [Bacillus cellulosilyticus DSM 2522]
          Length = 250

 Score = 48.0 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 18/152 (11%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVF 69
           + L     L+   +SDL + +IP++V I+ L  F++   +  +  +    L   VG  V 
Sbjct: 102 IALAFISLLMIITVSDLKTMLIPDKVLIIFLVIFIVLRLVHPLTPWWDSLLGASVGFGVL 161

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           ++     +   MGGGD+KL     +  G+    ++ LF  + +G I+    L  + +   
Sbjct: 162 LLLAIV-SKGGMGGGDIKLFGVIGIILGFYGVLVT-LFLASFIGAIVGGIGLVTKKVRRG 219

Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            P               IP+G  I++G +ISY
Sbjct: 220 NP---------------IPFGPFIAVGAIISY 236


>gi|21227780|ref|NP_633702.1| hypothetical protein MM_1678 [Methanosarcina mazei Go1]
 gi|20906185|gb|AAM31374.1| conserved protein [Methanosarcina mazei Go1]
          Length = 258

 Score = 48.0 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 8/144 (5%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS---FLLTAFLLGMDYELIALHL 62
           M+     L     L++   +DL    + N+V   ML S   F++     G     +   +
Sbjct: 5   MIEILKILFTMPFLLYGCYTDLKERRVSNKVWKYMLASGSVFVIYEVFTG-GLPYVKSLI 63

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG----GILSV 118
           L  +IVFI  +  F     GGGD K L   ++ F   P FL       +LG    G+ + 
Sbjct: 64  LSSVIVFISIYILFQLGAFGGGDAKGLIVLSILFPLYPVFLFSGKVYPLLGLPPIGLFTF 123

Query: 119 FILTVRMITNHIPIFGMFVPKSFL 142
            +L   ++   +   GMF      
Sbjct: 124 TVLENALLITVLVPLGMFFYNLLH 147


>gi|229543678|ref|ZP_04432738.1| Prepilin peptidase [Bacillus coagulans 36D1]
 gi|229328098|gb|EEN93773.1| Prepilin peptidase [Bacillus coagulans 36D1]
          Length = 253

 Score = 48.0 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 16/149 (10%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    LV   +SDL   +IP++V      +               A    V     +  
Sbjct: 104 VLFISLLVIITVSDLAYMLIPDKVLFPFAAAIAAVRLFHPASPWWSAWLGAVFGFCLLYL 163

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
             FF    MGGGD+KL     +  G                   +     +      +  
Sbjct: 164 IAFFTKGAMGGGDIKLFFVIGLVLGIEK----------------TFLAFFLACFFGALYG 207

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            G+     F  +  +P+G  I++G L +Y
Sbjct: 208 VGLMAAGKFKKRKPVPFGPFIAIGALAAY 236


>gi|121601550|ref|YP_993008.1| A24 family peptidase [Burkholderia mallei SAVP1]
 gi|124383373|ref|YP_001026340.1| putative fimbriae assembly-related protein [Burkholderia mallei
           NCTC 10229]
 gi|126449619|ref|YP_001080386.1| putative fimbriae assembly-related protein [Burkholderia mallei
           NCTC 10247]
 gi|134282195|ref|ZP_01768900.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305]
 gi|242314685|ref|ZP_04813701.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b]
 gi|254197642|ref|ZP_04904064.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13]
 gi|254358542|ref|ZP_04974815.1| putative fimbriae assembly-related protein [Burkholderia mallei
           2002721280]
 gi|121230360|gb|ABM52878.1| peptidase, A24 (type IV prepilin peptidase) family [Burkholderia
           mallei SAVP1]
 gi|124291393|gb|ABN00662.1| putative fimbriae assembly-related protein [Burkholderia mallei
           NCTC 10229]
 gi|126242489|gb|ABO05582.1| putative fimbriae assembly-related protein [Burkholderia mallei
           NCTC 10247]
 gi|134246233|gb|EBA46322.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305]
 gi|148027669|gb|EDK85690.1| putative fimbriae assembly-related protein [Burkholderia mallei
           2002721280]
 gi|169654383|gb|EDS87076.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13]
 gi|242137924|gb|EES24326.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b]
          Length = 159

 Score = 48.0 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 9/148 (6%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+  + L   AL+DL +  +      ++   +   A +        A H  +G   F + 
Sbjct: 7   LVASWTLASLALADLRTRRLATFAVALVGALYAALALVGAPGDGGFASHAALGAAAFALG 66

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              F    + GGDVKL     +W G   +     + VA   G+  + +  V +     P 
Sbjct: 67  AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRAPR 121

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
              +    F     +PYG+A++ GGL++
Sbjct: 122 VLAW----FAPARGVPYGVALAAGGLLA 145


>gi|187926424|ref|YP_001892769.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12J]
 gi|241665911|ref|YP_002984270.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12D]
 gi|187728178|gb|ACD29342.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12J]
 gi|240867938|gb|ACS65598.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12D]
          Length = 183

 Score = 48.0 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 12/163 (7%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLV 64
           +  A ++      V A   D+    +PN +    +   +      G+           L 
Sbjct: 5   IDIAGWVSVAVLAVLAIALDIRLRRVPNWLVAAGVVLSIALIKFGGVQDLAYDWQDFWLG 64

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           G I F      +    MG GDVK  T   +  GW    ++     +++ G+ ++ I+ +R
Sbjct: 65  GAIAFACFLPLYTLGWMGAGDVKFFTVVGLLAGW-HGLVAVWLVSSMISGLHALGIVVLR 123

Query: 125 MITNHIPIFGM---------FVPKSFLMKNKIPYGIAISMGGL 158
            +    P   +             +      IPY   +++G L
Sbjct: 124 QLDASSPSAWIVMRVCPAIARWDIAHAGLRGIPYAAYMAIGLL 166


>gi|315649133|ref|ZP_07902224.1| peptidase A24A prepilin type IV [Paenibacillus vortex V453]
 gi|315275449|gb|EFU38806.1| peptidase A24A prepilin type IV [Paenibacillus vortex V453]
          Length = 170

 Score = 48.0 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 5/142 (3%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLI 67
           +  + +    L+ A L+DL S  IPN +++  ML   +    L G  +E +   L     
Sbjct: 2   AVAYGLCAVYLITAFLTDLRSMKIPNALTVPAMLLGPVYHGILDG--WEGMFFSLKGLGA 59

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            F+I    +    +G GDVKL      W G   + L  + +  +  G++ + IL  R  T
Sbjct: 60  GFLILLIMYFIGAVGAGDVKLFGGIGAWTGLWFT-LHAIMYSVLCAGVVGLIILLWRRET 118

Query: 128 -NHIPIFGMFVPKSFLMKNKIP 148
              I      +   F++K+ +P
Sbjct: 119 MKRIRKVVGSIAGVFILKSGLP 140


>gi|209696040|ref|YP_002263970.1| type IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD)
           (leader peptidase PilD) [Aliivibrio salmonicida LFI1238]
 gi|208009993|emb|CAQ80316.1| type IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD)
           (leader peptidase PilD) [Aliivibrio salmonicida LFI1238]
          Length = 295

 Score = 48.0 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 7/120 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
           F+   ++    L+     D+ + ++P+++++ +L + L  + +      L+   +     
Sbjct: 133 FAIAAVLFTLTLIALTFIDIDTMLLPDQITLPLLWTGLYLSLVGWSSVSLMDSVIGAMAG 192

Query: 68  VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
             I+   ++AF +      MG GD KLL +   W GW    L  +   +I+G I+ + +L
Sbjct: 193 YLILWSIYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-IVLLSSIVGAIIGIAML 251


>gi|260893560|ref|YP_003239657.1| peptidase A24A domain protein [Ammonifex degensii KC4]
 gi|260865701|gb|ACX52807.1| peptidase A24A domain protein [Ammonifex degensii KC4]
          Length = 250

 Score = 48.0 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 16/145 (11%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
            CL+ A+  DL   +IPNR+ +V     +    L      L AL        F++     
Sbjct: 106 ACLLVASFIDLEHCLIPNRLVLVAFLGGVPLGLLARDVGLLSALLGAGAAGGFLLLLALA 165

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
           +   MGGGD+KL T   ++ GW  S L       + G I  + +L  R            
Sbjct: 166 SRGGMGGGDIKLATVAGLFLGWPLSLLGTFLGCFVAG-IWGIVLLLTRRKGR-------- 216

Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161
                  K+ IP+G  +S+G LI+ 
Sbjct: 217 -------KDHIPFGPFLSLGFLIAL 234


>gi|295399387|ref|ZP_06809369.1| peptidase A24A domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978853|gb|EFG54449.1| peptidase A24A domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 254

 Score = 48.0 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 16/144 (11%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            L+   +SD+   MIP++V +V    FL     +       AL       + +      +
Sbjct: 111 LLMIIFVSDVRYMMIPDKVLLVFAIIFLFERLFIPFLSWRDALIGAAAGFLLLFLIAVIS 170

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
              MGGGD+KL        GW    L+F F   I G  + +  + +  +    P      
Sbjct: 171 KGGMGGGDIKLFALLGFVLGWKTVLLAFFFST-IYGTAIGLIGMALGKVRRREP------ 223

Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161
                    +P+G AI +G L +Y
Sbjct: 224 ---------MPFGPAIVLGSLTAY 238


>gi|126443602|ref|YP_001064073.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668]
 gi|217424146|ref|ZP_03455645.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576]
 gi|237508476|ref|ZP_04521191.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
           MSHR346]
 gi|126223093|gb|ABN86598.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668]
 gi|217392611|gb|EEC32634.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576]
 gi|235000681|gb|EEP50105.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
           MSHR346]
          Length = 204

 Score = 48.0 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 16/161 (9%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L      V AA  DL S  IPNR+  + L   L+    L   +   A  L        + 
Sbjct: 37  LCVTLLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAGLL 96

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP- 131
             F+    M  GDVKL+ +   W G T + L       ++GG  ++ ++  R     +  
Sbjct: 97  LPFYLVRGMAAGDVKLMLAIGAWVGPTLA-LHIALATFVVGGAWALAVVARRGRFRKLLA 155

Query: 132 --------------IFGMFVPKSFLMKNKIPYGIAISMGGL 158
                                        +PYG+AI++G L
Sbjct: 156 NLRHLFAGAALLRVASAARAAPEIDSVGMLPYGVAIAIGTL 196


>gi|53719512|ref|YP_108498.1| hypothetical protein BPSL1898 [Burkholderia pseudomallei K96243]
 gi|76810644|ref|YP_333337.1| hypothetical protein BURPS1710b_1938 [Burkholderia pseudomallei
           1710b]
 gi|254179960|ref|ZP_04886559.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655]
 gi|254188630|ref|ZP_04895141.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur
           52237]
 gi|254260547|ref|ZP_04951601.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a]
 gi|52209926|emb|CAH35898.1| family A24A unassigned peptidase [Burkholderia pseudomallei K96243]
 gi|76580097|gb|ABA49572.1| family A24A unassigned peptidase [Burkholderia pseudomallei 1710b]
 gi|157936309|gb|EDO91979.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur
           52237]
 gi|184210500|gb|EDU07543.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655]
 gi|254219236|gb|EET08620.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a]
          Length = 166

 Score = 48.0 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 2/125 (1%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIICFCFFAFNIMGGG 84
           D     IPN + +V L + ++        +       L+G  V  +  F FFA  +MG  
Sbjct: 21  DCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALIGGAVGLVSLFPFFALRVMGAA 80

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVK+      W G  P+        ++  G+ ++ ++ +          G     +   +
Sbjct: 81  DVKVFAVLGAWCGL-PALPRLWVVASVAAGVHALALMLLTRTPPGSLGRGGAPAFALGAR 139

Query: 145 NKIPY 149
              PY
Sbjct: 140 RAAPY 144


>gi|328952517|ref|YP_004369851.1| peptidase A24A prepilin type IV [Desulfobacca acetoxidans DSM
           11109]
 gi|328452841|gb|AEB08670.1| peptidase A24A prepilin type IV [Desulfobacca acetoxidans DSM
           11109]
          Length = 168

 Score = 48.0 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
            +DL    IPN +++    + L    ++    E + +  L  ++   +   FFA   MGG
Sbjct: 17  YTDLRWRRIPNVLTVSGALAGLALNMIILGPTEGLRIACLGLVVGLALLLPFFALGGMGG 76

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
           GDVKLL +   W G      +   + A+ GGI S+ +L +
Sbjct: 77  GDVKLLAALGAWVGPG-RVFNIFLYAALAGGIASIIMLAL 115


>gi|148556402|ref|YP_001263984.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1]
 gi|148501592|gb|ABQ69846.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1]
          Length = 151

 Score = 47.6 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 2/113 (1%)

Query: 22  AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY-ELIALHLLVGLIVFIICFCFFAFNI 80
            A+ DL S  IPNR+ +++             D    +    +V  +   I    FA   
Sbjct: 19  CAVVDLRSRTIPNRLVVLVALLAAPYWLAAAPDLLGRVIGQAVVIAVALPILLLLFAIRA 78

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
            GGGDVKL  +  +W     + L     +A+ G +L++ IL          + 
Sbjct: 79  WGGGDVKLSAALLLWLPGKEA-LEAAAIMAVTGAVLALLILPFGRRATARGVP 130


>gi|156975736|ref|YP_001446643.1| Type II secretory pathway, prepilin signal peptidase PulO [Vibrio
           harveyi ATCC BAA-1116]
 gi|156527330|gb|ABU72416.1| hypothetical protein VIBHAR_03471 [Vibrio harveyi ATCC BAA-1116]
          Length = 289

 Score = 47.6 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM--LGSFLLTAFLLGMDYELIALHLLVG 65
           F+   +   F L+ A   DL + ++P+++++ +   G  L  A +  +  +   +  + G
Sbjct: 129 FTVALVFFTFVLIAATFIDLDTMLLPDQLTLPLMWAGIALALAGISPVSLQDSIIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW  S    +   +++G I  +  L
Sbjct: 189 YLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|118579238|ref|YP_900488.1| prepilin peptidase [Pelobacter propionicus DSM 2379]
 gi|118501948|gb|ABK98430.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Pelobacter propionicus DSM 2379]
          Length = 255

 Score = 47.6 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 22/157 (14%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65
            F+A+FL     LV   + DL   +IPN++S+  ++  F+L+ FL    +    L +L G
Sbjct: 101 TFAALFLFCSALLVITCI-DLEYRVIPNKISLPGIVIGFVLSFFLPWPGWLNSLLGILAG 159

Query: 66  LIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
               ++  C +        MGGGD+KL+     + GW    + F+     L G+L+  + 
Sbjct: 160 GGSLLLVACAYEWLTGREGMGGGDIKLVAMMGAFLGWE--AVPFIILAGSLAGLLAGGLP 217

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
            +               +       IP+G  ++ G L
Sbjct: 218 ML--------------IRRRDSGQAIPFGPYLAFGAL 240


>gi|149915634|ref|ZP_01904160.1| peptidase A24A, prepilin type IV [Roseobacter sp. AzwK-3b]
 gi|149810526|gb|EDM70369.1| peptidase A24A, prepilin type IV [Roseobacter sp. AzwK-3b]
          Length = 166

 Score = 47.6 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 6/149 (4%)

Query: 7   VFSAVFLIPPF-CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           + +A FL       V+   +DL S  IPN   I +   FL+    + +  +     L+  
Sbjct: 8   MQAAWFLPFVLPICVWVIWTDLSSMRIPNASVIALTCVFLVVGLFV-LPLQDYPWRLVNL 66

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           +IV +I     A  IMG GD K L + A +         F+ F A     L    +T R+
Sbjct: 67  VIVLLIGILLNAAGIMGAGDSKFLAAAAPFIDPGDVVPLFVIFSA----NLLACFVTHRL 122

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAIS 154
           +             S+  + K P G A+ 
Sbjct: 123 VMKSTLRQLAPDWISWSREGKFPMGFALG 151


>gi|326795296|ref|YP_004313116.1| prepilin peptidase [Marinomonas mediterranea MMB-1]
 gi|326546060|gb|ADZ91280.1| Prepilin peptidase [Marinomonas mediterranea MMB-1]
          Length = 256

 Score = 47.6 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           +  S + F+++FLI    L  AA+ D+ +  IP+  S++++ S  +   L         L
Sbjct: 107 LTSSPLQFASLFLIF-LSLFIAAVIDIENKWIPDECSLMIIASSFVALLLNAQPLADNVL 165

Query: 61  HLLVGLIVFIICFCFFAFNI-----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
            L+ G    +     F  +      +G GD KLL +   W G++ +    + F A LG I
Sbjct: 166 GLICGY-ALVYFLRLFYLHFRQIEAIGLGDAKLLAAIGAWLGFS-NLPYVIMFAASLGMI 223

Query: 116 LSVFILTVRM 125
            ++ I   R 
Sbjct: 224 GALIIRATRS 233


>gi|254483259|ref|ZP_05096491.1| peptidase, A24 (type IV prepilin peptidase) family [marine gamma
           proteobacterium HTCC2148]
 gi|214036482|gb|EEB77157.1| peptidase, A24 (type IV prepilin peptidase) family [marine gamma
           proteobacterium HTCC2148]
          Length = 178

 Score = 47.6 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 14/147 (9%)

Query: 22  AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81
           A + D     IPN ++   L   L  A L    +  +  HL+      I  F  F    +
Sbjct: 20  ATVMDFTRHRIPNYLTYPALVLGLCLAALS-WGWTGLGNHLIGTFAAGIPLFLIFLSGSL 78

Query: 82  GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR------------MITNH 129
           GGGDVKL+ +     G+ P+ L+ L    ++GG+ +  IL  +             +   
Sbjct: 79  GGGDVKLMAAVGAIVGF-PNALNALLASIMVGGLCAALILIWQGRLWGLVQYACSTLGYR 137

Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMG 156
             I           ++  P+G+AI++G
Sbjct: 138 AGILSQAPQPPPAHRDSFPFGVAIAIG 164


>gi|327189764|gb|EGE56908.1| putative cpaA pilus assembly protein [Rhizobium etli CNPAF512]
          Length = 172

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 68/158 (43%), Gaps = 12/158 (7%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL----------L 63
           I     ++AA +D  +  IPN + + ++  + L A ++    E +   L           
Sbjct: 11  ISVLLFLYAAWTDFRTWKIPNTIVLALVTLYALRAMVVIFGSEDVGAALFASSGIGGDVG 70

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
            GL++F++    +AF + G GD KL     ++ GW    L F F + +LG +  + +   
Sbjct: 71  AGLLMFMLGVVLWAFRLFGAGDAKLFLPIGLFVGW-HGMLPFSFLLLVLGVVTLLVLRLP 129

Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
             +      F M + +    +  IPYG+ +    L++ 
Sbjct: 130 VPLRVAHLAFFMRIGEIRASRK-IPYGVLMVFAALLTL 166


>gi|317154607|ref|YP_004122655.1| peptidase A24A prepilin type IV [Desulfovibrio aespoeensis Aspo-2]
 gi|316944858|gb|ADU63909.1| peptidase A24A prepilin type IV [Desulfovibrio aespoeensis Aspo-2]
          Length = 181

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 17/162 (10%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    L  A ++D+    I N ++  ++ S  L A  L    + + L      +   +  
Sbjct: 8   MLVAALAVATVTDIRRQRIYNWLTFPLILS-GLAAHTLHAGLDGLLLSSGGFALGLGVMV 66

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             F   +MG GDVKL+     W G   +F +FLF   + GG  +V +L          + 
Sbjct: 67  VPFFLGLMGAGDVKLMAGVGAWLGAQAAFTAFLF-TCLAGGFYAVVVLARHFDQFKAVLV 125

Query: 134 GMFVPKSFLMKN---------------KIPYGIAISMGGLIS 160
            ++                        ++ YG+AI++G + +
Sbjct: 126 NIWATFLLAASTRRFEYTPVVEAQSMPRLCYGVAIAVGTVAA 167


>gi|54310291|ref|YP_131311.1| putative leader peptidase PilD [Photobacterium profundum SS9]
 gi|46914732|emb|CAG21509.1| putative leader peptidase PilD [Photobacterium profundum SS9]
          Length = 299

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 59/131 (45%), Gaps = 9/131 (6%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           +   +   F L+     D+ + ++P+++++ ++ +  + A L+G+    +   ++  ++ 
Sbjct: 140 AVAVIFFSFALIALTFIDIDTMLLPDQITLPLMWA-GIAAALVGLSPVSLQDAIIGAMVG 198

Query: 69  FIICFCFFAF-------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
           ++  +  F           MG GD KLL +   W GW  S    +   +++G +  + +L
Sbjct: 199 YLSLWSLFWSFKLITGKEGMGYGDFKLLAALGAWLGW-QSLPFVVLLSSLVGAVCGIILL 257

Query: 122 TVRMITNHIPI 132
            V+   +  P 
Sbjct: 258 RVQRSDSQTPF 268


>gi|225174963|ref|ZP_03728960.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1]
 gi|225169603|gb|EEG78400.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1]
          Length = 193

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 33/178 (18%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           +    +  AA  D+    IPN+++  +M+   ++  FL G+    IA      L    + 
Sbjct: 4   VLILFVALAAYFDVRQRRIPNKITFPIMIVGLVIYGFLEGLP--GIAFGFTGLLSGLFVF 61

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS--------------- 117
           F  FA   MG GDVK+  +     G     L    F    GGI++               
Sbjct: 62  FIPFALGGMGAGDVKMTAAVGALMGM-QFVLHSAIFTIFAGGIMAIGYLIAHKRLLSGLK 120

Query: 118 ----------VFILTVRMITNHIPIFGMFVPKSFLMKNK----IPYGIAISMGGLISY 161
                     + +L +R     I  F ++   S + K +    +PYG+AI+ G +++ 
Sbjct: 121 NVVGMIARPLLAMLAIRFRNPLINRFSVYFTPSPVEKKEEAIYLPYGVAIAAGAVLTL 178


>gi|226196296|ref|ZP_03791878.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
           Pakistan 9]
 gi|254188720|ref|ZP_04895231.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur
           52237]
 gi|157936399|gb|EDO92069.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur
           52237]
 gi|225931513|gb|EEH27518.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
           Pakistan 9]
          Length = 159

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 9/148 (6%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+  + L   AL+DL +  +      ++   +   A          A H  +G   F + 
Sbjct: 7   LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALG 66

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              F    + GGDVKL     +W G   +     + VA   G+  + +  V +    +P 
Sbjct: 67  AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRVPR 121

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
              +    F     +PYG+A++ GGL++
Sbjct: 122 VLAW----FAPARGVPYGVALAAGGLLA 145


>gi|253576548|ref|ZP_04853876.1| peptidase A24A prepilin type IV [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843962|gb|EES71982.1| peptidase A24A prepilin type IV [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 167

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 1/132 (0%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L+ A ++DL +  IPN +++  + + L    L    ++            F + F  +
Sbjct: 9   LMLLAAFVTDLRTMKIPNVITVTGIFTGLSYHLLTD-GWKGAWFSAAGAATGFGLMFALY 67

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
               +GGGDVKL      W G   +  + ++ +   G I  + ++  R   + +      
Sbjct: 68  LLRAVGGGDVKLFAGIGAWTGIALTLSTMMYSILAAGCIGLILLIWRRETGHRLRRIAGS 127

Query: 137 VPKSFLMKNKIP 148
           +  + ++++  P
Sbjct: 128 LLGAAMLRSPAP 139


>gi|238917901|ref|YP_002931418.1| hypothetical protein EUBELI_01988 [Eubacterium eligens ATCC 27750]
 gi|238873261|gb|ACR72971.1| Hypothetical protein EUBELI_01988 [Eubacterium eligens ATCC 27750]
          Length = 156

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 7/155 (4%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           I    +V+A   D+ +  IPNR+ I    + ++   + G   E I  H+   L+      
Sbjct: 9   IALILIVWAVSEDVKAFRIPNRLIIAGYIAGVIMLVIRGFSGEHIGNHITGTLVGLSEML 68

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
            F+    +G GDVKL     +  G T      L    + GGI  V  L ++         
Sbjct: 69  IFYIIKAVGAGDVKLFAVLGLLLGKT-LITQLLIVSLVTGGITGVVELCIKKT------G 121

Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
            + +  S +  +   Y +AI M  ++ +   ++  
Sbjct: 122 RVELGMSHVQMHGFHYAVAILMAYVVVFGYRFVVM 156


>gi|295700372|ref|YP_003608265.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1002]
 gi|295439585|gb|ADG18754.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1002]
          Length = 180

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 16/157 (10%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
              + AA +DL +  IPNR+ ++ L   L     +          L      F +   F+
Sbjct: 17  VLAIVAASTDLTARRIPNRLIVLGLSVALAVQMSIHGPLAGALDWLSGAACGFALLMPFY 76

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT-----------VRM 125
               M  GDVKLL     W G             ++GG+ S+ I+            +R 
Sbjct: 77  LLRGMAAGDVKLLMMIGAWVGPA-LTWRIALATFLIGGLWSLLIVLCRGRFARLLANLRQ 135

Query: 126 ITNHIPIFGMFVPKSFLMKNK----IPYGIAISMGGL 158
           +   + +  +  P     ++     IPYG+AI+ G L
Sbjct: 136 LIGGLAVAPLRRPSLIDARSGSVGSIPYGVAIAAGTL 172


>gi|51246869|ref|YP_066753.1| type IV prepilin leader peptidase [Desulfotalea psychrophila LSv54]
 gi|50877906|emb|CAG37746.1| related to type IV prepilin leader peptidase [Desulfotalea
           psychrophila LSv54]
          Length = 263

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 21/155 (13%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
             +      L+   + D +  +IP+ +S+  +   FL +     + +    + LLVG   
Sbjct: 104 LAYFCFSAALLVIIVIDFYHQIIPDLISLPGIALGFLFSFINPEISWLSSLIGLLVGGGA 163

Query: 69  F-IICFCFFAFN---IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
              I + +F       MGGGD+KLL     W GW  S +  +F  ++ G I+ +  L ++
Sbjct: 164 LYAIAWGYFTLRKQEGMGGGDIKLLAMLGAWLGW-QSLVFIVFTSSLFGAIIGLIALRIQ 222

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
              N               + KIP+G  + +  L+
Sbjct: 223 NKGN---------------QTKIPFGPFLCLAALV 242


>gi|327398770|ref|YP_004339639.1| Prepilin peptidase [Hippea maritima DSM 10411]
 gi|327181399|gb|AEA33580.1| Prepilin peptidase [Hippea maritima DSM 10411]
          Length = 256

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 4/120 (3%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +    +L+  + L+ A+  DL   +IP+R+S+ ++   L+  ++ G     +   L    
Sbjct: 102 LDGVFYLVFVYSLIVASFVDLKHYIIPDRISLGLIAVGLVFGYIRGDFLGSLYGFLAGFF 161

Query: 67  IVFIICFC---FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
            ++I+       F    MGGGD+KLL     + G      S LF  ++ G  + + ++  
Sbjct: 162 GLYIMAIIGSWVFKKEAMGGGDIKLLGGIGAFLGIKGVLFS-LFSASLFGSFVGIALILF 220


>gi|258515846|ref|YP_003192068.1| peptidase A24A domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779551|gb|ACV63445.1| peptidase A24A domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 248

 Score = 47.2 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           I    LV AA  DL   +IP++V +  L   +   FL      +  L       + ++  
Sbjct: 103 IFLSALVVAAFIDLEHGIIPDQVVVAALVLGVPVLFLASPYKLISGLTGFAAAGIIMLVI 162

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
              A   MGGGDVKL     ++ GW P+ L+ LF   + GG++ + +L
Sbjct: 163 ALLAPGGMGGGDVKLSAVIGLYLGW-PNVLAGLFLAFLSGGLVGIVLL 209


>gi|269961263|ref|ZP_06175630.1| leader peptidase PilD [Vibrio harveyi 1DA3]
 gi|269834024|gb|EEZ88116.1| leader peptidase PilD [Vibrio harveyi 1DA3]
          Length = 289

 Score = 47.2 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
           F+   +   F L+ A   DL + ++P+++++ ++ + +  A   +  +  +   +  + G
Sbjct: 129 FTVALVFFTFVLIAATFIDLDTMLLPDQLTLPLMWAGIALALSGISPVSLQDSIIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW  S    +   +++G I  +  L
Sbjct: 189 YLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|86147182|ref|ZP_01065498.1| hypothetical protein MED222_18936 [Vibrio sp. MED222]
 gi|85835066|gb|EAQ53208.1| hypothetical protein MED222_18936 [Vibrio sp. MED222]
          Length = 145

 Score = 47.2 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 16/148 (10%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
            +         +  D+   +IPN V + +    +       +             IV  +
Sbjct: 8   LIPLATMAAIVSYQDIRYRIIPNGVVVAVALLGVFY-----ICQTEKFEQFYNFFIVLAV 62

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
               F FN++  GD KLL + ++        L+ +  +   GG L++             
Sbjct: 63  GAVLFYFNVIAAGDSKLLAAFSLMVSPNMMLLA-VNVILFAGGTLAI----------TQW 111

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLI 159
           + G     S      +PYG+ I +G L+
Sbjct: 112 VLGKTTGNSEWTNRGVPYGVPICLGSLL 139


>gi|325518462|gb|EGC98161.1| prepilin peptidase [Burkholderia sp. TJI49]
          Length = 165

 Score = 47.2 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 8/155 (5%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           I      F  + D+    I N +    L    +   +    +       L+G  V +I F
Sbjct: 9   IFLVWASFVGIGDVRFRRIQNSLVFAGLIGAFVCGAVNENPFGTSITQALIGASVGLIGF 68

Query: 74  C-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
             FF   +MG  DVK+      W G   + L F    +I  G+ +++++ +   +     
Sbjct: 69  SPFFVLRLMGAADVKVFAVLGAWCG-GQALLWFWVVASIAAGLHALWLMLLSRTSIAALC 127

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
                  +   +   PYG        +  P +   
Sbjct: 128 RRGTPAMALGGRRATPYG------AFLVLPAAVWL 156


>gi|167748315|ref|ZP_02420442.1| hypothetical protein ANACAC_03059 [Anaerostipes caccae DSM 14662]
 gi|167652307|gb|EDR96436.1| hypothetical protein ANACAC_03059 [Anaerostipes caccae DSM 14662]
          Length = 165

 Score = 47.2 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++  F L  A + D  +  IPN      L          G   + I L  L  ++     
Sbjct: 1   MVLLFYLTAAVIWDFTTFRIPNYFIFFGLILGASLLPFRGYGIQEILLGCLCPVVFL--- 57

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF-ILTVRMITNHIP 131
           +  F     G GD+KL   T ++ G    +L  + F A  GG+LS+F +L+ R +   + 
Sbjct: 58  YPLFCMGAFGAGDIKLFAVTGLFLGGLNIYLVAVSFAA--GGVLSLFQMLSDRSLIPRLV 115

Query: 132 IFGMFVPKSFLMKNKIPY 149
            F  ++      +  + Y
Sbjct: 116 CFYSYLAGCIHERKFMTY 133


>gi|94309595|ref|YP_582805.1| peptidase A24A, prepilin type IV [Cupriavidus metallidurans CH34]
 gi|93353447|gb|ABF07536.1| flp pilus assembly leader peptidase CpaA [Cupriavidus metallidurans
           CH34]
          Length = 167

 Score = 47.2 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 4/161 (2%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M     +   +  I    ++ AA +DL    IPN ++       L     +       + 
Sbjct: 1   MTTIPTLSPYIGPIVIAVVLTAAATDLQRRRIPNWLTFGAWLVALPVQMTIHGLAAGAST 60

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
             L  L    I    +    M  GDVKL+ +   W G + +         ++GG+ ++ +
Sbjct: 61  WALGWLTGLGIFLPIYLLRGMAAGDVKLMAAVGAWLGASLAASI-ALASFVIGGVWALTL 119

Query: 121 LTV---RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
           +                    +       +PYG+AI+ G L
Sbjct: 120 VLASGKGRQVVRNLGGIALTGQGGASVGSLPYGVAIAAGTL 160


>gi|163814846|ref|ZP_02206234.1| hypothetical protein COPEUT_00996 [Coprococcus eutactus ATCC 27759]
 gi|158449785|gb|EDP26780.1| hypothetical protein COPEUT_00996 [Coprococcus eutactus ATCC 27759]
          Length = 169

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
             +     +  A ++D  S  IPN++  V ++  F+++A + G+  E +       +I  
Sbjct: 16  FLIPLIATVSMAVVTDFRSWKIPNKLVAVGLIQGFVVSAVVRGLP-EGLLSSAKGCVIPV 74

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +I +  F    +G GD+KLL     + G        + +  + GG++S+  L 
Sbjct: 75  VILYVLFLIKALGAGDIKLLAVAGSFVGLD--IYRVMIYSFLAGGVISIIYLL 125


>gi|84387248|ref|ZP_00990269.1| hypothetical protein V12B01_22501 [Vibrio splendidus 12B01]
 gi|84377895|gb|EAP94757.1| hypothetical protein V12B01_22501 [Vibrio splendidus 12B01]
          Length = 179

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 59/135 (43%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    L+  ++ D+    IPN++ I+ L  + L+ F     +++  +  +  ++ F    
Sbjct: 10  VFWALLIAVSVYDVEKHRIPNKILILFLFVYFLSMFNRNYSFDVFLMSFVGFVVFFCFGL 69

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             +    M  GDVKLL    ++ GW     +  F +   G I + ++L     +N++ I 
Sbjct: 70  LLYFLRAMSAGDVKLLGIVGMYLGWGQLLGASYFILLSAGVIGTFYLLYNFSNSNNLSIR 129

Query: 134 GMFVPKSFLMKNKIP 148
           G F  K  ++    P
Sbjct: 130 GYFENKLIVLGGVAP 144


>gi|251795279|ref|YP_003010010.1| peptidase A24A prepilin type IV [Paenibacillus sp. JDR-2]
 gi|247542905|gb|ACS99923.1| peptidase A24A prepilin type IV [Paenibacillus sp. JDR-2]
          Length = 171

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 2/112 (1%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
            +DL S  IPN +++  L    + A   G     + L +      F+          +G 
Sbjct: 17  YTDLKSMTIPNLLTVPFLAGGFVYALFSG-GGHGLLLAIYGAAAGFVPLLILHLAKGIGA 75

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           GDVKL  +   W G T + L  + +  +  G++ + +L            GM
Sbjct: 76  GDVKLFAALGAWIG-TLAVLQLMMYAILYAGLVGLVLLVFHRPFARKMTAGM 126


>gi|167624208|ref|YP_001674502.1| peptidase A24A prepilin type IV [Shewanella halifaxensis HAW-EB4]
 gi|167354230|gb|ABZ76843.1| peptidase A24A prepilin type IV [Shewanella halifaxensis HAW-EB4]
          Length = 188

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 18/162 (11%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           +I     + A + DL    IPN + +  +   FL+  +   +    + +  +   + FII
Sbjct: 11  VIAGVFFILAIVVDLTREKIPNWLCLFAIFCGFLVNGYFAHLS--GLMISFIGFSLAFII 68

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV-------- 123
            F  F F I+G GD+KL+       G  P  L++     I+ G ++  +L +        
Sbjct: 69  LFPTFIFKILGAGDIKLMMGIGALMG--PQLLAWSIAYGIIAGAVTSILLIIWKSGFSGC 126

Query: 124 -----RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                R              +      ++PY  A+++G + +
Sbjct: 127 IKTFKRYWDCFYLRTYFKPEEGEAAGQRVPYAPALAIGWVWA 168


>gi|325525575|gb|EGD03365.1| peptidase A24A prepilin type IV [Burkholderia sp. TJI49]
          Length = 168

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 14/156 (8%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
              + AA +DL S  IPNRV  V L   L+    L       A  L      F +   F+
Sbjct: 5   LLAIVAASTDLASRRIPNRVVAVGLAGALIAQCALHGVAAGTAGWLAGAATGFGLLLPFY 64

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG-GILSVFILTVRMITNHIPIFGM 135
               M  GDVKL+ +   W G   +F   L    + G G +   I   R+      +  +
Sbjct: 65  LLRGMAAGDVKLMLAVGAWVGPAMAFRIVLAAFVLGGIGAVGFAIAHGRLRQMAANVRAL 124

Query: 136 FVPKSFLMK-------------NKIPYGIAISMGGL 158
            + +    +               +PYG+AI+ G L
Sbjct: 125 IMRRPGRPRAATADGHGPFESVGTLPYGVAIAAGTL 160


>gi|37680965|ref|NP_935574.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio vulnificus YJ016]
 gi|37199715|dbj|BAC95545.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio vulnificus YJ016]
          Length = 306

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 146 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 205

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 206 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 264

Query: 122 TVRMI 126
            ++  
Sbjct: 265 RLQKQ 269


>gi|317472146|ref|ZP_07931478.1| type IV leader peptidase [Anaerostipes sp. 3_2_56FAA]
 gi|316900550|gb|EFV22532.1| type IV leader peptidase [Anaerostipes sp. 3_2_56FAA]
          Length = 165

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 5/110 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++  F L  A + D  +  IPN      L          G   + I L  L  ++     
Sbjct: 1   MVLLFYLTAAVIWDFTTFRIPNYFIFFGLILGASLLPFRGYGIQEILLGCLCPVVFL--- 57

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +  F     G GD+KL   T ++ G    +L+ + F A  GG+LS+F + 
Sbjct: 58  YPLFCMGAFGAGDIKLFAVTGLFLGGLNIYLAAVSFAA--GGVLSLFQML 105


>gi|315179151|gb|ADT86065.1| leader peptidase PilD [Vibrio furnissii NCTC 11218]
          Length = 289

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 12/154 (7%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML--GSFLLTAFLLGMDYELIALHLLVG 65
           F+   L   + L+ A   D  + ++P+++++ ++  G  L  A +  +  +   +  + G
Sbjct: 129 FAVALLFFSYVLIAATFIDFDTMLLPDQLTLPLMWGGIALALAGISPITLQDAVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW    +  +   +++G +  +  L
Sbjct: 189 YLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPI-IILMSSVVGLVFGLIQL 247

Query: 122 TV--RMITNHIPIFGMFVPKSFLMKNKIPYGIAI 153
            +  R I    P         +L      YG AI
Sbjct: 248 RLQKRGIDKAFPFGPYLAIAGWLSAL---YGQAI 278


>gi|99082194|ref|YP_614348.1| hypothetical protein TM1040_2354 [Ruegeria sp. TM1040]
 gi|99038474|gb|ABF65086.1| membrane protein; putative [Ruegeria sp. TM1040]
          Length = 165

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 5/149 (3%)

Query: 8   FSAVFLIPPFCLVFA-ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +  FL     L +  AL+DL S  IPN     +   ++L   L+   +      LL   
Sbjct: 7   AALWFLPFVVPLCYVVALNDLRSMRIPNWTVDTLGLIYILLGLLVMPTWADYGWQLLHLP 66

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
           +   I + F+A  ++G GD K   + A +  +          + I    L    L  R+ 
Sbjct: 67  VGIAIGYLFYASGLVGAGDAKFAGAAAPYVAFA----DLKLIMIIFAITLLSGFLAHRLA 122

Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
            +          +S+    K P G+ +  
Sbjct: 123 RHTPLRRLAPHWQSWNTGAKFPMGLCLGA 151


>gi|56421160|ref|YP_148478.1| signal peptidase [Geobacillus kaustophilus HTA426]
 gi|56381002|dbj|BAD76910.1| signal peptidase (late competence protein) [Geobacillus
           kaustophilus HTA426]
          Length = 248

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 3/117 (2%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIICFCFF 76
            L    +SDL   +IP+RV +V  G FL+   ++  + +  + L   VG  +  +     
Sbjct: 106 LLAIIVVSDLRYMLIPDRVLLVFAGLFLMERLVIPFLPWVDMLLGAAVGFSLLWLIAVL- 164

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
           +   MGGGDVKL        GW    L+F     + G I+ +  + +  +    P+ 
Sbjct: 165 SNGGMGGGDVKLFAVLGFVLGWKMVLLAFFLAT-LYGTIIGLIGMALGRVRRGKPMP 220


>gi|261402262|ref|YP_003246486.1| Peptidase A24A domain protein [Methanocaldococcus vulcanius M7]
 gi|261369255|gb|ACX72004.1| Peptidase A24A domain protein [Methanocaldococcus vulcanius M7]
          Length = 340

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +  AV++I    L+ A+++D+   +IP++  I+M    L+      + Y    ++ ++  
Sbjct: 3   LLDAVYIINFILLILASITDIKERIIPHKYVIIMAVLNLI------VGYHYFGINAVIAF 56

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
               I     +   MGGGDVKL T+ A  F +  SF+ ++
Sbjct: 57  FTTFILCLILSIG-MGGGDVKLFTALAPIFAYPDSFIFYV 95


>gi|73669011|ref|YP_305026.1| hypothetical protein Mbar_A1491 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396173|gb|AAZ70446.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 254

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRV---SIVMLGSFLLTAFLLGMDYELIALHL 62
           M+     L     L+++  SDL S  + N+V    +     F+    L G     +   +
Sbjct: 1   MIEILKILFSIPFLLYSCYSDLNSRRVSNKVWKYMLASGSGFVFYEILTG-GLSYLMPLI 59

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
           L G++VF   +  F     GGGD K L   ++ F   P F
Sbjct: 60  LSGVLVFTAVYLLFQVGAFGGGDAKGLIVLSILFPSYPVF 99


>gi|237812064|ref|YP_002896515.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
           MSHR346]
 gi|237505467|gb|ACQ97785.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
           MSHR346]
          Length = 166

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 2/125 (1%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIICFCFFAFNIMGGG 84
           D     IPN + +V L + ++        +       L+G  V  +  F FFA  +MG  
Sbjct: 21  DCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALIGGAVGLVSLFPFFALRVMGAA 80

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVK+      W G + +        +I  G+ ++ ++ +          G     +   +
Sbjct: 81  DVKVFAVLGAWCGLS-ALPRLWVVASIAAGVHALALMLLTRTPPGSLGRGGAPAFALGAR 139

Query: 145 NKIPY 149
              PY
Sbjct: 140 RAAPY 144


>gi|167751238|ref|ZP_02423365.1| hypothetical protein EUBSIR_02224 [Eubacterium siraeum DSM 15702]
 gi|167655745|gb|EDR99874.1| hypothetical protein EUBSIR_02224 [Eubacterium siraeum DSM 15702]
          Length = 352

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 3   ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
              MV +   ++    L+  +  D+    IP   +I +    L  A            H 
Sbjct: 107 SLPMVVA---IVFFSLLIVLSCIDIDHMEIPYWCTISIAV--LGIATFFTEPNMPWWEHF 161

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW 98
               ++ +       F  MGGGDV+L+ ++    GW
Sbjct: 162 AGAAVIAVPFAILALFGGMGGGDVQLMAASGFVLGW 197


>gi|172060492|ref|YP_001808144.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
 gi|171993009|gb|ACB63928.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
          Length = 165

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 8/149 (5%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC-FFAF 78
            F A  D+    I N + +  L   L+ A +    + +     LVG  V ++CF   FA 
Sbjct: 15  AFVAAGDIRFRRIRNSLVVAGLFGALVAAAIGRNPFGISLTQSLVGAAVGLVCFFPLFAL 74

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
            +MG  DVK+      W G     L ++   ++  G+ ++ ++ +   +           
Sbjct: 75  RVMGAADVKVFAVLGAWCGAPMLLLLWIVG-SLAAGVHALCVMLLSRTSVSALYKRATPT 133

Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSYLF 167
            +   +   PY         +  P +   
Sbjct: 134 MTLGGRRATPY------AAFLVIPAAVWL 156


>gi|329928977|ref|ZP_08282787.1| peptidase, A24 family [Paenibacillus sp. HGF5]
 gi|328937229|gb|EGG33656.1| peptidase, A24 family [Paenibacillus sp. HGF5]
          Length = 170

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 2/119 (1%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           +  F I    L+ A ++DL S  IPN +++  + S  +    L   +E +   L      
Sbjct: 2   AVAFGICAVYLIAAFITDLRSMKIPNALTVSAMLSGPVYHGALD-GWEGLLFSLKGLGAG 60

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
           F+I    +    +G GDVKL      W G   +    + +  +  G + + IL  R  T
Sbjct: 61  FLILLIMYFIGAVGAGDVKLFGGIGAWTGLWFTLQG-IMYSVLFAGAIGLLILLWRRET 118


>gi|239814524|ref|YP_002943434.1| peptidase A24A prepilin type IV [Variovorax paradoxus S110]
 gi|239801101|gb|ACS18168.1| peptidase A24A prepilin type IV [Variovorax paradoxus S110]
          Length = 194

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 57/157 (36%), Gaps = 17/157 (10%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIICFCF 75
             LV AA+SD     IPN ++   +   ++              H L GL   F I   F
Sbjct: 25  VLLVMAAVSDARFYRIPNWLTFGGMAFAIIYGAFAARTPMTGLQHALGGLGTGFAIMLPF 84

Query: 76  FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP---- 131
           +   IMG GDVKL+     + G   +  + LF     G       +  R + + +     
Sbjct: 85  YVLGIMGAGDVKLMAMVGAFIGPYQTLEAILFTCIAGGFAAVAVAIHRRRLGHMLANVKD 144

Query: 132 ---------IFGMFVPKSFLMKNKI---PYGIAISMG 156
                    I G+    +   +  I   PYGI I +G
Sbjct: 145 AAQGIVVSGIAGVRPNGTIDTRQSIGKLPYGICICVG 181


>gi|89053480|ref|YP_508931.1| peptidase A24A, prepilin type IV [Jannaschia sp. CCS1]
 gi|88863029|gb|ABD53906.1| peptidase A24A prepilin type IV [Jannaschia sp. CCS1]
          Length = 167

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 7/143 (4%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
           ++ ALSDL    IPN   + + G FL+T     +  +     L    IV +  F   +  
Sbjct: 22  IWVALSDLRQMRIPNVAVLALTGGFLITGLFA-LPMDAYLWRLAALGIVLLAGFVITSLG 80

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
           ++G GD K   + A +         +LFF+A+   +L    +T R       +       
Sbjct: 81  LVGAGDSKFAAAMAPFIAPG----DYLFFLALFSLVLIGSWITHRSAGRVPAVRRATAHW 136

Query: 140 SFLMKNKI-PYGIAISMGGLISY 161
           S   + K+ P G+A++ G L+ Y
Sbjct: 137 SSWEQGKLFPMGVALA-GALVIY 158


>gi|320101690|ref|YP_004177281.1| peptidase A24A prepilin type IV [Isosphaera pallida ATCC 43644]
 gi|319748972|gb|ADV60732.1| peptidase A24A prepilin type IV [Isosphaera pallida ATCC 43644]
          Length = 269

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           AV ++    ++ AA+ D +   +PN ++   LG+ +L   +    +      +L  L  F
Sbjct: 17  AVLVVICAVMIEAAIIDGWKLKVPNWLTYNFLGAGILYWTVTS-GWAGFQFAMLGFLAGF 75

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           ++ +       MG GDVKLL     W GW  + + F    A++GGI++V ++ 
Sbjct: 76  VL-YPLCLVGGMGAGDVKLLFGIGAWTGWYATLVIFAL-CAVVGGIMAVIMMA 126


>gi|156977411|ref|YP_001448317.1| prepilin peptidase CpaA [Vibrio harveyi ATCC BAA-1116]
 gi|156529005|gb|ABU74090.1| hypothetical protein VIBHAR_06198 [Vibrio harveyi ATCC BAA-1116]
          Length = 112

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 11/101 (10%)

Query: 60  LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
           + L   L+V +     +AF  +G GD+K     ++         S L  +A +GG L+  
Sbjct: 14  IQLTTFLVVLVGGLILYAFIWVGAGDIKYAAVLSLTIPLQDLLWS-LVMMAFVGGFLATA 72

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
            L  R            V  +   K  IPYGIAIS+G  + 
Sbjct: 73  YLVNRK----------LVTNTANTKEGIPYGIAISVGFYLV 103


>gi|114764954|ref|ZP_01444127.1| hypothetical protein 1100011001318_R2601_09083 [Pelagibaca
           bermudensis HTCC2601]
 gi|114542666|gb|EAU45690.1| hypothetical protein R2601_09083 [Roseovarius sp. HTCC2601]
          Length = 165

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 6/142 (4%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           + P CL +   +D+    I N+ ++ +L  + +    + +  +          +  +   
Sbjct: 16  VLPICL-YVCFTDMREMRITNQANLALLLVYAVVGVFV-LPLDAYLWRYAHFGVALVAGI 73

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
              A  +MG GD K + + A             F +A+   +     L  R+        
Sbjct: 74  ALNAGGVMGAGDAKFIAAAA----PFIHVGDLRFLMALGAAVTLAAFLAHRIAKMTPLRR 129

Query: 134 GMFVPKSFLMKNKIPYGIAISM 155
                KS+    + P G+A+  
Sbjct: 130 LAPDWKSWSSGKRFPMGVALGG 151


>gi|59712795|ref|YP_205571.1| type 4 prepilin peptidase PilD [Vibrio fischeri ES114]
 gi|59480896|gb|AAW86683.1| type 4 prepilin peptidase PilD [Vibrio fischeri ES114]
 gi|83338470|gb|ABC11895.1| PilD [Vibrio fischeri ES114]
          Length = 295

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
           F+   ++    L+     D+ + ++P+++++ +L S L  A +      L+   +     
Sbjct: 133 FAVAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192

Query: 68  VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
             I+   ++ F +      MG GD KLL +   W GW    L  +   +++G I+ V +L
Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-IILLSSVVGAIIGVIML 251

Query: 122 TVRM 125
           T + 
Sbjct: 252 TAQK 255


>gi|260771243|ref|ZP_05880170.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           furnissii CIP 102972]
 gi|260613840|gb|EEX39032.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           furnissii CIP 102972]
          Length = 289

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 12/154 (7%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML--GSFLLTAFLLGMDYELIALHLLVG 65
           F+   L   + L+ A   D  + ++P+++++ ++  G  L  A +  +      +  + G
Sbjct: 129 FAVALLFFSYVLIAATFIDFDTMLLPDQLTLPLMWGGIALALAGISPITLHDAVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW    +  +   +++G +  +  L
Sbjct: 189 YLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPI-IILMSSVVGLVFGLIQL 247

Query: 122 TV--RMITNHIPIFGMFVPKSFLMKNKIPYGIAI 153
            +  R I    P         +L      YG AI
Sbjct: 248 RLQKRGIDKAFPFGPYLAIAGWLSAL---YGQAI 278


>gi|261409005|ref|YP_003245246.1| peptidase A24A prepilin type IV [Paenibacillus sp. Y412MC10]
 gi|261285468|gb|ACX67439.1| peptidase A24A prepilin type IV [Paenibacillus sp. Y412MC10]
          Length = 170

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 1/140 (0%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           +  F I    L+ A ++DL S  IPN +++  + S  +    L   +E +   L      
Sbjct: 2   AVAFGICAVYLIAAFITDLRSMKIPNALTVSAMLSGPVYHGALD-GWEGLLFSLKGLGAG 60

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           F+I    +    +G GDVKL      W G   +    ++ V   G I  + +L  R    
Sbjct: 61  FLILLIMYFIGAVGAGDVKLFGGIGAWTGLWFTLQGIMYSVLFAGAIGLLILLWRRETMK 120

Query: 129 HIPIFGMFVPKSFLMKNKIP 148
            +      +   F+MK+ +P
Sbjct: 121 RVRHVVESIAGVFVMKSWLP 140


>gi|149200855|ref|ZP_01877830.1| peptidase A24A, prepilin type IV [Roseovarius sp. TM1035]
 gi|149145188|gb|EDM33214.1| peptidase A24A, prepilin type IV [Roseovarius sp. TM1035]
          Length = 166

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 7/137 (5%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
           ++ ALSDL    IPN   + ++G FL+   +  +     A  L    ++ +      A  
Sbjct: 22  IWVALSDLRRMKIPNTAVLTLVGIFLVIGLMT-LPLVDYAWRLSHLAVMLVAGIAMNAVR 80

Query: 80  IMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           +MG GD K + + A +     +  L+F+F   +LG  ++      R I            
Sbjct: 81  LMGAGDAKFIAAAAPFVALGDAATLAFIFAATLLGAFVT-----HRAIMYSPLRRLAPDW 135

Query: 139 KSFLMKNKIPYGIAISM 155
           +S+    K P G A+  
Sbjct: 136 QSWHAGKKFPMGFALGG 152


>gi|32477846|ref|NP_870840.1| signal peptide [Rhodopirellula baltica SH 1]
 gi|32448403|emb|CAD77918.1| hypothetical protein-signal peptide and transmembrane prediction
           [Rhodopirellula baltica SH 1]
          Length = 141

 Score = 46.8 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 59/105 (56%), Gaps = 2/105 (1%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            LV+A+L DL +  IP+ +S+++    ++++ L  +   ++ + L  G++  +I    F 
Sbjct: 12  LLVWASLHDLRTREIPDWISVLIGVVAIVSSLLGWLGLSIVWV-LAGGVVGLVIASALFR 70

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           F  +GGGD KL+ + A+  G     +  LF +AI GG+LS+  + 
Sbjct: 71  FAKLGGGDGKLIIALAMLVGPVGILI-VLFGMAITGGVLSLIAML 114


>gi|327441707|dbj|BAK18072.1| type II secretory pathway, prepilin signal peptidase PulO
           [Solibacillus silvestris StLB046]
          Length = 250

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 18/153 (11%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIV 68
           AV L+    LV   +SD+   +IP+++ +  L   ++   L  +  +    +   +G  +
Sbjct: 101 AVALLFISLLVIINVSDIAYMLIPDKILLFFLPLLIVARILSPLDPWWDSIIGAAIGFSI 160

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
            ++     +   MGGGD+KL                FL    +LG   ++  L +  +  
Sbjct: 161 LLLIAVI-SKGGMGGGDIKL----------------FLLIGLVLGTFNTLLTLFLASVIG 203

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            I    +   +    K  +P+G +I++  +I Y
Sbjct: 204 MIVGIIILKVRGKGRKTPVPFGPSIAIAAIIVY 236


>gi|323702111|ref|ZP_08113779.1| peptidase A24A prepilin type IV [Desulfotomaculum nigrificans DSM
           574]
 gi|323532993|gb|EGB22864.1| peptidase A24A prepilin type IV [Desulfotomaculum nigrificans DSM
           574]
          Length = 167

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 55/158 (34%), Gaps = 15/158 (9%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             +     +DL    I N V +      L+     G     +   L   L+   +    F
Sbjct: 9   AIVTICLYTDLRYRKIFNLVLLPAFLLALVFNLSTG-GIGGLLFSLTGALLGLSLLLIPF 67

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
               MG GDVKLL     W G    +  FL   AI+GGI++ F L           F +F
Sbjct: 68  MLGGMGAGDVKLLAVIGAWQGPQFVWFCFL-CTAIVGGIIATFQLVRTGKLRPTFKFILF 126

Query: 137 VPKSFLMK-------------NKIPYGIAISMGGLISY 161
                  K                PYG+AI+ G L +Y
Sbjct: 127 TLVPGSPKVNAFGTLATAKVGEAFPYGVAIAAGTLATY 164


>gi|53723522|ref|YP_102956.1| peptidase [Burkholderia mallei ATCC 23344]
 gi|121599833|ref|YP_993101.1| putative peptidase [Burkholderia mallei SAVP1]
 gi|124383829|ref|YP_001026122.1| putative peptidase [Burkholderia mallei NCTC 10229]
 gi|126449329|ref|YP_001080606.1| peptidase A24A, prepilin type IV [Burkholderia mallei NCTC 10247]
 gi|126454569|ref|YP_001066055.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a]
 gi|134282228|ref|ZP_01768933.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305]
 gi|226199664|ref|ZP_03795217.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
           Pakistan 9]
 gi|242316839|ref|ZP_04815855.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b]
 gi|254177457|ref|ZP_04884112.1| peptidase A24A, prepilin type IV [Burkholderia mallei ATCC 10399]
 gi|254199899|ref|ZP_04906265.1| peptidase A24A, prepilin type IV [Burkholderia mallei FMH]
 gi|254206231|ref|ZP_04912583.1| peptidase A24A, prepilin type IV [Burkholderia mallei JHU]
 gi|254297796|ref|ZP_04965249.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e]
 gi|254358352|ref|ZP_04974625.1| peptidase A24A, prepilin type IV [Burkholderia mallei 2002721280]
 gi|52426945|gb|AAU47538.1| peptidase, putative [Burkholderia mallei ATCC 23344]
 gi|121228643|gb|ABM51161.1| putative peptidase [Burkholderia mallei SAVP1]
 gi|124291849|gb|ABN01118.1| putative peptidase [Burkholderia mallei NCTC 10229]
 gi|126228211|gb|ABN91751.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a]
 gi|126242199|gb|ABO05292.1| peptidase A24A, prepilin type IV [Burkholderia mallei NCTC 10247]
 gi|134246266|gb|EBA46355.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305]
 gi|147749495|gb|EDK56569.1| peptidase A24A, prepilin type IV [Burkholderia mallei FMH]
 gi|147753674|gb|EDK60739.1| peptidase A24A, prepilin type IV [Burkholderia mallei JHU]
 gi|148027479|gb|EDK85500.1| peptidase A24A, prepilin type IV [Burkholderia mallei 2002721280]
 gi|157807103|gb|EDO84273.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e]
 gi|160698496|gb|EDP88466.1| peptidase A24A, prepilin type IV [Burkholderia mallei ATCC 10399]
 gi|225928250|gb|EEH24284.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
           Pakistan 9]
 gi|242140078|gb|EES26480.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b]
          Length = 166

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 2/125 (1%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIICFCFFAFNIMGGG 84
           D     IPN + +V L + ++        +       L+G  V  +  F FFA  +MG  
Sbjct: 21  DCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALIGGAVGLVSLFPFFALRVMGAA 80

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVK+      W G + +        ++  G+ ++ ++ +          G     +   +
Sbjct: 81  DVKVFAVLGAWCGLS-ALPRLWVVASVAAGVHALALMLLTRTPPGSLGRGGAPAFALGAR 139

Query: 145 NKIPY 149
              PY
Sbjct: 140 RAAPY 144


>gi|291531694|emb|CBK97279.1| Type II secretory pathway, prepilin signal peptidase PulO and
           related peptidases [Eubacterium siraeum 70/3]
          Length = 352

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 3   ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
              MV +   ++    L+  +  D+    IP   +I +    L  A            H 
Sbjct: 107 SLPMVVA---IVFFSLLIVLSCIDIDHMEIPYWCTISIAV--LGIATFFTEPNMPWWEHF 161

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW 98
               ++ +       F  MGGGDV+L+ ++    GW
Sbjct: 162 AGAAVIAVPFAILALFGGMGGGDVQLMAASGFVLGW 197


>gi|322418888|ref|YP_004198111.1| Prepilin peptidase [Geobacter sp. M18]
 gi|320125275|gb|ADW12835.1| Prepilin peptidase [Geobacter sp. M18]
          Length = 274

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           A+  +    LV     DL   +IP+ +++  ++  F+L+ F+  + +    + ++ G   
Sbjct: 119 AILFVFCSALVTITFIDLEHQIIPDVITLPGIVLGFILSFFIPQLGWLNSLIGIVGGGGS 178

Query: 69  FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            ++    +      + MGGGDVKLL     + GW  + +  +F  ++LG ++ V ++ +R
Sbjct: 179 LLLIAWLYQVVAKKDGMGGGDVKLLAMMGAFLGW-KAIIFIVFVSSLLGSVIGVTLMVIR 237

Query: 125 MITNHIPIF 133
              + + I 
Sbjct: 238 KKDSTLAIP 246


>gi|261250240|ref|ZP_05942816.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           orientalis CIP 102891]
 gi|260939356|gb|EEX95342.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           orientalis CIP 102891]
          Length = 289

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
           +   +   F L+ A   DL + ++P+++++ +  + +  A +    +  +   +  + G 
Sbjct: 130 AICLIFFTFVLISATFIDLDTMLLPDQLTLPLTWTGIAIALIDISPVSLQDAVIGAIAGY 189

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +   + +  F        MG GD KLL +   W GW       +   +++G +  +  L 
Sbjct: 190 LALWVVYWAFKLTTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSLVGLVFGLIQLR 248

Query: 123 VRMI 126
           ++  
Sbjct: 249 LKRQ 252


>gi|83338373|gb|ABC11880.1| PilD [Aliivibrio fischeri]
          Length = 295

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
           F+   ++    L+     D+ + ++P+++++ +L S L  A +      L+   +     
Sbjct: 133 FAIAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192

Query: 68  VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
             I+   ++ F +      MG GD KLL +   W GW    L  +   +++G I+ V +L
Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-IILLSSVVGAIIGVIML 251

Query: 122 TVRM 125
           T + 
Sbjct: 252 TAQK 255


>gi|254179874|ref|ZP_04886473.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655]
 gi|184210414|gb|EDU07457.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655]
          Length = 159

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 9/148 (6%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+  + L   AL+DL +  +      ++   +   A          A H  +G   F + 
Sbjct: 7   LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALG 66

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              F    + GGDVKL     +W G   +     + VA   G+  + +  V +     P 
Sbjct: 67  AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRAPR 121

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
              +    F     +PYG+A++ GGL++
Sbjct: 122 VLAW----FAPARGVPYGVALAAGGLLA 145


>gi|291556753|emb|CBL33870.1| Type II secretory pathway, prepilin signal peptidase PulO and
           related peptidases [Eubacterium siraeum V10Sc8a]
          Length = 352

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 3   ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
              MV +   ++    L+  +  D+    IP   +I +    L  A            H 
Sbjct: 107 SLPMVVA---IVFFSLLIVLSCIDIDHMEIPYWCTISIAV--LGIATFFTEPNMPWWEHF 161

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW 98
               ++ +       F  MGGGDV+L+ ++    GW
Sbjct: 162 AGAAVIAVPFAILALFGGMGGGDVQLMAASGFVLGW 197


>gi|289192798|ref|YP_003458739.1| Peptidase A24A domain protein [Methanocaldococcus sp. FS406-22]
 gi|288939248|gb|ADC70003.1| Peptidase A24A domain protein [Methanocaldococcus sp. FS406-22]
          Length = 339

 Score = 46.4 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + S V++I    L+ A+++D+   +IP++ +I M+   L+      + Y     + ++  
Sbjct: 3   LLSVVYIINFILLILASITDIKERIIPHKYTIAMIIMNLV------VGYYYFGFNAIIAF 56

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
              +I     +   MGGGDVKL T+ A  F +  SF+ ++
Sbjct: 57  FSTLILCLILSVG-MGGGDVKLFTALAPIFAYPNSFVFYI 95


>gi|187919322|ref|YP_001888353.1| peptidase A24A prepilin type IV [Burkholderia phytofirmans PsJN]
 gi|187717760|gb|ACD18983.1| peptidase A24A prepilin type IV [Burkholderia phytofirmans PsJN]
          Length = 178

 Score = 46.4 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 18/157 (11%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             ++ AAL DL +  IPN + +  L   +   +      + + + +   L         +
Sbjct: 14  ALVLVAALWDLQTRRIPNWLVVTGLIVAIPVQWFTHGVVDGMTMWMGGMLAGGAFFLPGY 73

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
           A  +MG GDVKL+ +   + G     L       ++G I S+ I   R            
Sbjct: 74  AMRLMGAGDVKLMAAIGAFCG-AYGALEIGLATCVIGAIGSLAIWLRRRQMRAGLNGAAA 132

Query: 137 V-----------------PKSFLMKNKIPYGIAISMG 156
           +                          +PYGIAI++G
Sbjct: 133 LLISCATPGNGALRRSGSVAESSATGTMPYGIAIAIG 169


>gi|83338418|gb|ABC11886.1| PilD [Aliivibrio fischeri]
          Length = 295

 Score = 46.4 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
           F+   ++    L+     D+ + ++P+++++ +L S L  A +      L+   +     
Sbjct: 133 FAIAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192

Query: 68  VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
             I+   ++ F +      MG GD KLL +   W GW    L  +   +++G I+ V +L
Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-IILLSSVVGAIIGVIML 251

Query: 122 TVRM 125
           T + 
Sbjct: 252 TAQK 255


>gi|167574000|ref|ZP_02366874.1| peptidase A24A, prepilin type IV [Burkholderia oklahomensis C6786]
          Length = 164

 Score = 46.4 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 16/157 (10%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
              V AA  DL S  IPNR+  + L   L+    L   +   A  L        +   F+
Sbjct: 1   MLAVVAASIDLSSRRIPNRLIALGLAGALVAQCGLPGPHNGFAAWLAGAATGAGLLLPFY 60

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI---- 132
               M  GDVKL+ +   W G + + L  +    I+GG  ++ ++  R     +      
Sbjct: 61  LLRGMAAGDVKLMLAIGAWVGPSLA-LRIVLATFIVGGAWALAVVLRRGQFRKLLANLRH 119

Query: 133 -----------FGMFVPKSFLMKNKIPYGIAISMGGL 158
                        +     F     +PYG+AI++G L
Sbjct: 120 LFASAALLRNPSAVRATPEFDSVGMLPYGVAIAIGTL 156


>gi|296156487|ref|ZP_06839325.1| peptidase A24A prepilin type IV [Burkholderia sp. Ch1-1]
 gi|295893086|gb|EFG72866.1| peptidase A24A prepilin type IV [Burkholderia sp. Ch1-1]
          Length = 178

 Score = 46.4 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 18/156 (11%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            +  AAL D+ +  IPN +    L + +   +      E + + L   L    I    +A
Sbjct: 15  LVFVAALWDMQTRRIPNWLVAAGLIAAMPVQWFTHGAVEGMTMWLGGMLAGGAIFLPGYA 74

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI----------- 126
             ++G GDVKL+ +   + G     L       ++G I S+ I   R             
Sbjct: 75  MRLLGAGDVKLMAAIGAFCG-AYGALEIGLATCVIGAIGSLAIWLRRRQMCAGLSGMAAL 133

Query: 127 ------TNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
                   +                 +PYG+AI++G
Sbjct: 134 LIDCATPGNGARRRSGSVAESSATGTMPYGVAIAIG 169


>gi|197117919|ref|YP_002138346.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Geobacter bemidjiensis Bem]
 gi|197087279|gb|ACH38550.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Geobacter bemidjiensis Bem]
          Length = 274

 Score = 46.4 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           V  +    LV     DL   +IP+ +++  ++  F  + F+  + +    + +L G    
Sbjct: 120 VLFVFCSALVVVTFIDLEHQIIPDAITLPGIVAGFAASFFIPQLGWLNSLIGILAGGGSL 179

Query: 70  IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +    +      + MGGGD+KLL     + GW  + L  +F  +++G ++ V ++  R 
Sbjct: 180 FLVAYIYQAIAKKDGMGGGDIKLLAMMGAFLGW-KAILFIIFTASLIGSVIGVSVMLARK 238

Query: 126 ITNHIPIF 133
             + + I 
Sbjct: 239 ENSSLAIP 246


>gi|134299957|ref|YP_001113453.1| peptidase A24A, prepilin type IV [Desulfotomaculum reducens MI-1]
 gi|134052657|gb|ABO50628.1| peptidase A24A, prepilin type IV [Desulfotomaculum reducens MI-1]
          Length = 167

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 51/151 (33%), Gaps = 15/151 (9%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
            +DL    I N V        L   F+ G     I   +    +   +    F    MG 
Sbjct: 16  YTDLRYRKIYNAVLFPTFLLALTYWFVSG-GLGGILFSIKGATLGLALLLIPFMLGGMGA 74

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS-------------VFILTVRMITNHI 130
           GDVKLL     W G    +L FL   AI+GGI++             +  +    +    
Sbjct: 75  GDVKLLAVIGAWQGPQFVWLCFL-CTAIVGGIIAAVQLSKSGRLLQSLKYILFTFLPGAP 133

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                    +       PYG+AI+ G   +Y
Sbjct: 134 KAHAFGTLTTAKAGEAFPYGVAIASGTFATY 164


>gi|186474100|ref|YP_001861442.1| peptidase A24A prepilin type IV [Burkholderia phymatum STM815]
 gi|184196432|gb|ACC74396.1| peptidase A24A prepilin type IV [Burkholderia phymatum STM815]
          Length = 178

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 16/161 (9%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             +  AA+ DL +  IPN + ++ LG  L     L      ++L ++  L    +    +
Sbjct: 14  ALVAIAAIYDLHARRIPNWLVVIGLGVGLAVQAALHGMASGMSLWVVGALTGGAMLMPGY 73

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
              ++G GDVKL+ +   + G   +F + L   A+ G    V +L    +   +      
Sbjct: 74  LLRMLGAGDVKLMAAVGCFCGGAGAFQAALAVCAVGGVWALVELLRHGQMRAGLQNMTAA 133

Query: 137 VPKSFLMKNK----------------IPYGIAISMGGLISY 161
           +   ++                    +PYG+AI++G +++ 
Sbjct: 134 LTDVWMPSGGTPHAGSTRTRRPTAGSLPYGVAIAVGTMLAL 174


>gi|269966288|ref|ZP_06180376.1| leader peptidase PilD [Vibrio alginolyticus 40B]
 gi|269829085|gb|EEZ83331.1| leader peptidase PilD [Vibrio alginolyticus 40B]
          Length = 289

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
           F+   L   F L+ A   DL + ++P+++++ +  + ++ A +    +  +   +  + G
Sbjct: 129 FTVALLFFTFILIAATFIDLDTMLLPDQLTLPLTWTGIVLALVEISPVTLQDSVIGAIAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW  S    +   +++G +  +  L
Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGIVFGIIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|163803452|ref|ZP_02197325.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio sp. AND4]
 gi|159172753|gb|EDP57601.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio sp. AND4]
          Length = 289

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
           F+   +     L+ A   DL + ++P+++++ ++   +  A   +  +  +   +  + G
Sbjct: 129 FTVALIFFTLLLIAATFIDLDTMLLPDQLTLPLMWGGITLALIGVSPISLQDSVIGAMTG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW  S    +   +++G I  +  L
Sbjct: 189 YLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|171317110|ref|ZP_02906313.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5]
 gi|171097744|gb|EDT42571.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5]
          Length = 166

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 2/146 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M       +        A SD+ S  I N + +  L S   +AF     + +     LVG
Sbjct: 1   MAHPIFSAVFLVWATLVAASDIRSRRISNGLVLAGLASGFASAFFDAGPFGISLPQALVG 60

Query: 66  LIVFIIC-FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           +++ ++  F FF    MG  DVK+      W G   S L      +++ G+ +V ++ + 
Sbjct: 61  MLIGLVGLFPFFLLRAMGAADVKVFAVLGAWCG-AHSLLGLWVIASLVAGLHAVVLMLLS 119

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYG 150
             +  +         +       PY 
Sbjct: 120 RTSPGVLWHRREPTLALGRYRATPYA 145


>gi|325958918|ref|YP_004290384.1| peptidase A24A domain-containing protein [Methanobacterium sp.
           AL-21]
 gi|325330350|gb|ADZ09412.1| Peptidase A24A domain protein [Methanobacterium sp. AL-21]
          Length = 391

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL---LVGLIVF 69
           +I     ++A+ SDL   +I N+++  ++   ++   +  +    I L L    V  +VF
Sbjct: 11  IIAVVACIYASYSDLKFGLIKNKLTFPLIAIGIILNGIYVLITNDIFLFLEGCFVTGLVF 70

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGW-TPSFLSFLFFVAILGGILSVFIL 121
           I+ + F+      GGDVKL T+ A    +   S+   +    ILG    +  L
Sbjct: 71  IVGYVFWKMGAWAGGDVKLFTAVAALIPFYATSYYPTIVTYQILGWQFPLLSL 123


>gi|83720453|ref|YP_443062.1| peptidase [Burkholderia thailandensis E264]
 gi|83654278|gb|ABC38341.1| peptidase, putative [Burkholderia thailandensis E264]
          Length = 166

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 2/125 (1%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIICFCFFAFNIMGGG 84
           D     IPN + +  L + ++        +E   +  L+G  V  +  F FFA  +MG  
Sbjct: 21  DCRDRRIPNELVLAGLAAVIIFTVCRQNPFETTLVGALIGGAVGLVSLFPFFALRLMGAA 80

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVK+      W G  P+        ++  GI ++ +L +                +   +
Sbjct: 81  DVKVFAVLGAWCGL-PALPRLWIVASVAAGIHALGLLLLTRTPLGSLGRNGAPAFALGAR 139

Query: 145 NKIPY 149
              PY
Sbjct: 140 RSAPY 144


>gi|212638474|ref|YP_002314994.1| type II secretory pathway, prepilin signal peptidase PulO
           [Anoxybacillus flavithermus WK1]
 gi|212559954|gb|ACJ33009.1| Type II secretory pathway, prepilin signal peptidase PulO
           [Anoxybacillus flavithermus WK1]
          Length = 249

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 19/140 (13%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLL--TAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81
           +SD+   +IPNRV + +    L+   +F     +    L   VG  +  +     +   M
Sbjct: 112 VSDVHYMIIPNRVLLFLAPLLLIERLSFAPLTPWWDSLLGSFVGFTMLFV-IALLSKGGM 170

Query: 82  GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
           GGGD+KL     +  G   + L+F     ++G +  +  + +  +    P          
Sbjct: 171 GGGDIKLFAVIGLALGAKLTVLAFFLST-LVGTVFGLIGMALGRVRRGQP---------- 219

Query: 142 LMKNKIPYGIAISMGGLISY 161
                +P+G AI +G LI+Y
Sbjct: 220 -----MPFGPAIVVGTLIAY 234


>gi|20089408|ref|NP_615483.1| hypothetical protein MA0519 [Methanosarcina acetivorans C2A]
 gi|19914306|gb|AAM03963.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 254

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 8/149 (5%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS---FLLTAFLLGMDYELIALHL 62
           M+     L     L++A  +DL +  + N+V   ML S   F++     G     +   +
Sbjct: 1   MIEILKILFTMPFLLYACYTDLKARRVSNKVWKYMLASGSVFIIYEVFTG-GVPCLKALI 59

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG----GILSV 118
             G+IVF+  +  F     GGGD K L   ++ F   P F        +LG    G+ + 
Sbjct: 60  FSGVIVFLSVYILFQLGAFGGGDAKGLIVLSILFPLYPVFQFSGKVYPLLGLPPIGLFAF 119

Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKI 147
            +L   ++   +   GMF        + +
Sbjct: 120 TVLENALLVTVLVPLGMFCYNLLHFSSGM 148


>gi|167566931|ref|ZP_02359847.1| peptidase A24A, prepilin type IV [Burkholderia oklahomensis EO147]
          Length = 164

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 16/157 (10%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
              V AA  DL S  IPNR+  + L   L+    L   +   A  L        +   F+
Sbjct: 1   MLAVVAASIDLSSRRIPNRLIALGLAGALVAQCGLPGPHNGFAAWLAGAATGAGLLLPFY 60

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI---- 132
               M  GDVKL+ +   W G +   L  +    I+GG  ++ ++  R     +      
Sbjct: 61  LLRGMAAGDVKLMLAIGAWVGPS-LALRIVLATFIVGGAWALAVVLRRGQFRKLLANLRH 119

Query: 133 -----------FGMFVPKSFLMKNKIPYGIAISMGGL 158
                        +     F     +PYG+AI++G L
Sbjct: 120 LFASAALLRNPSAVRAAPEFDSVGMLPYGVAIAIGTL 156


>gi|172065270|ref|YP_001815982.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
 gi|171997512|gb|ACB68429.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6]
          Length = 179

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L      + AA +D+ S  IPNR+  + L   L+    L          L      F + 
Sbjct: 12  LCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCALHGIQAGALAWLAGAATGFGLL 71

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-------- 124
             F+    M  GDVKL+ +   W G   +F   +    ++GGI ++    +R        
Sbjct: 72  LPFYLLRGMAAGDVKLMLAIGAWVGAQMTFY-IVLATFLVGGIGAIGFALLRGRMRQMCA 130

Query: 125 -------MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
                    +          P  F     +PYG+AI+ G L
Sbjct: 131 NVWTLIARRSTGAYAGATDGPVEFASVGALPYGVAIAAGTL 171


>gi|46580522|ref|YP_011330.1| hypothetical protein DVU2117 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449941|gb|AAS96590.1| membrane protein, putative [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234261|gb|ADP87115.1| peptidase A24A prepilin type IV [Desulfovibrio vulgaris RCH1]
          Length = 188

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 19/159 (11%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           +    L+ A ++D+ S  IPN ++   ML        + G+D   +        +   + 
Sbjct: 8   VLGVILLIAVVTDIRSMRIPNWLTFPAMLMGLGYHTAMRGLD--GLLFSAGGLALGGALM 65

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              F   +MG GDVKL+ +   + G T   LS   + ++ GG+ ++ +L   +      +
Sbjct: 66  LLPFILRVMGAGDVKLMAAAGAFLG-TRGVLSAFIWTSLAGGLYALVVLLFHLPQLMAIL 124

Query: 133 FGMFVPKSFLMKNK----IP-----------YGIAISMG 156
             +     F+        IP           YG+AI+ G
Sbjct: 125 RAVVASVRFMSVTGKLSYIPATKDARLPRLCYGVAIAAG 163


>gi|297617366|ref|YP_003702525.1| prepilin peptidase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145203|gb|ADI01960.1| Prepilin peptidase [Syntrophothermus lipocalidus DSM 12680]
          Length = 250

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 16/148 (10%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +   CL    ++DL   +IP+ V I  L +  +  +L         L   +G   F+   
Sbjct: 103 VLVSCLTVITVADLKHMVIPDEVIIFALVTGGILLYLDSWARLKWGLASGLGAANFLALV 162

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
              +   MG GDVKL     ++ G   + +  LF   + G ++ + ++            
Sbjct: 163 ILVSRGGMGWGDVKLAGVLGLFLGVGGTLVG-LFVAFVAGALVGLSLVVAGRKGAKDL-- 219

Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISY 161
                        IP+G  +S+GGL+++
Sbjct: 220 -------------IPFGPFLSLGGLVAF 234


>gi|296134300|ref|YP_003641547.1| peptidase A24A prepilin type IV [Thermincola sp. JR]
 gi|296032878|gb|ADG83646.1| peptidase A24A prepilin type IV [Thermincola potens JR]
          Length = 176

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 18/165 (10%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           LI    L     +DL    I N+  +     F L  F        +   L    +   + 
Sbjct: 11  LILVLLLTVCLYTDLKERKIYNKF-VFPAIVFGLLYFTYIKGGSGLIFSLKGFGLGIALL 69

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-------- 124
           F  FA    G GDVKLL +     G    F +F+   A+ GG++++  L  +        
Sbjct: 70  FIPFALGGFGAGDVKLLGAVGALKGPAFVFAAFVL-TALAGGLIALGFLICQGRFFITLK 128

Query: 125 --------MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                   ++     I  +   +        PYGIAI  G + +Y
Sbjct: 129 RIVISLYILVGTRFKINSLNSLEKAEYHRAFPYGIAIVAGTVAAY 173


>gi|148642206|ref|YP_001272719.1| type IV leader peptidase [Methanobrevibacter smithii ATCC 35061]
 gi|148551223|gb|ABQ86351.1| type IV leader peptidase [Methanobrevibacter smithii ATCC 35061]
          Length = 289

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 6   MVFSAVFLIP----PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYELI 58
           M FS +FL+           AA+ D+ + +I NR+++ +L   L++   L +   + + I
Sbjct: 1   MDFSIIFLVQIIVTSLFCCLAAIFDVKTGIISNRLNLSLLIFGLISNLFLSVLSANIKYI 60

Query: 59  ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
              ++   + +I+ F F+   I GGGDVKLLT+ A    +  + 
Sbjct: 61  LCSIISMFVTYIVTFLFWKLKIWGGGDVKLLTAIATVIPFGINL 104


>gi|255767643|ref|NP_390685.2| membrane protease and transmethylase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|251757293|sp|P15378|LEP4_BACSU RecName: Full=Type 4 prepilin-like proteins leader
           peptide-processing enzyme; AltName: Full=Late competence
           protein ComC; Includes: RecName: Full=Leader peptidase;
           AltName: Full=Prepilin peptidase; Includes: RecName:
           Full=N-methyltransferase
 gi|225185271|emb|CAB14767.2| membrane protease and transmethylase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 248

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 16/149 (10%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    L+  A++D+   +IPNR+ I  L        +  +D     L       +F+  
Sbjct: 100 VVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAV 159

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
                   +GGGD+KL        G      +F F V I     +  +LT R        
Sbjct: 160 IAAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGR-------- 211

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                      +  +P+  AI+ G +++Y
Sbjct: 212 --------LAKRQPLPFAPAIAAGSILAY 232


>gi|113866747|ref|YP_725236.1| flp pilus assembly leader peptidase CpaA [Ralstonia eutropha H16]
 gi|113525523|emb|CAJ91868.1| flp pilus assembly leader peptidase CpaA [Ralstonia eutropha H16]
          Length = 177

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 12/153 (7%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            ++ AA  DL    IPN ++     + L     +          L    +  ++   F+ 
Sbjct: 18  IVLTAAAIDLDRRRIPNWLTFGAWIAALPLMATIHGPAAGSLAWLYGWTVGLVLFLPFYL 77

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG------------GILSVFILTVRM 125
              M  GDVKL+ +   W G + +    L    I G            G  ++  +   +
Sbjct: 78  MRGMAAGDVKLMAAVGAWLGGSMALKIALATCVIGGAWALVQVLATGQGRSTLARVGHML 137

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
           I   +P      P++      +PYG+AI+ G L
Sbjct: 138 IAALVPGSRPVQPQAEASAGSLPYGVAIAAGTL 170


>gi|323493654|ref|ZP_08098775.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           brasiliensis LMG 20546]
 gi|323312177|gb|EGA65320.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           brasiliensis LMG 20546]
          Length = 289

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
           F+   +   F L+ A   DL + ++P+++++ +  + +  + L    +  +   +  + G
Sbjct: 129 FTIALIFFTFVLIAATFIDLDTMLLPDQLTLPLTWAGIALSLLQISPVSLQDSVIGAIAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G +  +  L
Sbjct: 189 YLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGW-QYLPMVILLSSLVGLVFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLKQQ 252


>gi|161524908|ref|YP_001579920.1| peptidase A24A prepilin type IV [Burkholderia multivorans ATCC
           17616]
 gi|189350342|ref|YP_001945970.1| prepilin peptidase [Burkholderia multivorans ATCC 17616]
 gi|160342337|gb|ABX15423.1| peptidase A24A prepilin type IV [Burkholderia multivorans ATCC
           17616]
 gi|189334364|dbj|BAG43434.1| prepilin peptidase [Burkholderia multivorans ATCC 17616]
          Length = 165

 Score = 46.0 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 8/155 (5%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           I    +   A SD+    I N + I  L   L+   +    + +  +  L+G  + +ICF
Sbjct: 9   IFLVWVTLVASSDIRFRNIRNSLVIAGLAGALIGVTVNENPFGISLVQSLIGASIGLICF 68

Query: 74  C-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              FA  +MG  DVK+      W G   + L F    ++   + +++++     +     
Sbjct: 69  FPLFAMRVMGAADVKVFAVLGAWCG-AQALLGFWIVASLAASLHALWLMVASRTSVAALY 127

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167
                  S   +   PY         +  P +   
Sbjct: 128 KRNTPAMSLGGRRATPY------AAFLVMPAAAWL 156


>gi|83338398|gb|ABC11883.1| PilD [Aliivibrio fischeri]
          Length = 295

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
           F+   ++    L+     D+ + ++P+++++ +L S L  A +      L+   +     
Sbjct: 133 FAVAAILFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWNSVSLVDSVVGAMAG 192

Query: 68  VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
             I+   ++ F +      MG GD KLL +   W GW    L  +   +++G I+ V +L
Sbjct: 193 YLILWSIYWCFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-IILLSSVVGAIIGVIML 251

Query: 122 TVRM 125
           T + 
Sbjct: 252 TAQK 255


>gi|84489263|ref|YP_447495.1| hypothetical protein Msp_0452 [Methanosphaera stadtmanae DSM
          3091]
 gi|84372582|gb|ABC56852.1| conserved hypothetical membrane-spanning protein [Methanosphaera
          stadtmanae DSM 3091]
          Length = 363

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 5  KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM-LGSFLLTAFLLGMDYELIALHLL 63
           ++  +  LI   C + A  +D+   +IPN+++I + +    L +    +       + +
Sbjct: 4  NLIKISGILIVTVCCIIATYTDVKYGIIPNKLTIPLFVVGICLVSLYYFLSSTFNFFYYV 63

Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTA 93
            +I+F++ +  +   +  GGDVKL T+ +
Sbjct: 64 SIVIIFLLNYILWYLGLWAGGDVKLFTAIS 93


>gi|254230335|ref|ZP_04923722.1| bacterial Peptidase A24 N-terminal domain family [Vibrio sp. Ex25]
 gi|151937159|gb|EDN56030.1| bacterial Peptidase A24 N-terminal domain family [Vibrio sp. Ex25]
          Length = 267

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
           F+   L   F L+ A   DL + ++P+++++ +  + +  A +    +  +   +  + G
Sbjct: 129 FTVALLFFTFILIAATFIDLDTMLLPDQLTLPLTWAGIALALVEISPVTLQDSVIGAIAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW  S    +   +++G +  +  L
Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGIVFGIIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|238027565|ref|YP_002911796.1| peptidase A24A, prepilin type IV [Burkholderia glumae BGR1]
 gi|237876759|gb|ACR29092.1| Peptidase A24A, prepilin type IV [Burkholderia glumae BGR1]
          Length = 166

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 2/145 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+      +    +   A  D+    IPN + +  L   +++       + +  +  ++G
Sbjct: 1   MILILSVAVFLAWVTMVAAGDIRYRRIPNSLVVAGLICGMVSTISRYNPFGITPVEAVIG 60

Query: 66  LIV-FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            ++ F+  F FFA  +MG  DVK+ T   +W G+   F  ++   ++   I  + ++   
Sbjct: 61  AVIGFVGLFPFFACRLMGAADVKVFTVLGLWCGFQGLFWCWI-AASLAALIHVLGMMYWT 119

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149
                          +   +   PY
Sbjct: 120 RTPIGALWQRGSPTLALGARRGSPY 144


>gi|134295592|ref|YP_001119327.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4]
 gi|134138749|gb|ABO54492.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4]
          Length = 166

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 2/147 (1%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +     +  A SD+    IPN +    + +   +A      + +  LH L+G++V + C 
Sbjct: 9   VFLAWAILVAASDIRYRRIPNSLVFGGVAAAFASALCGASPFGIAPLHALLGMLVGMACL 68

Query: 74  C-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
             FF   +MG  DVK+  +   W G     L      +++  + ++ +L +         
Sbjct: 69  LPFFVARVMGAADVKVFAALGAWCG-VHGLLWLWIAASLVACLHALAVLLLTRTPLRALR 127

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLI 159
                  +       PYG  +++   +
Sbjct: 128 GRSAPTLALGRYRATPYGACLAIPAAL 154


>gi|196250148|ref|ZP_03148842.1| peptidase A24A domain protein [Geobacillus sp. G11MC16]
 gi|196210332|gb|EDY05097.1| peptidase A24A domain protein [Geobacillus sp. G11MC16]
          Length = 251

 Score = 45.7 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 16/158 (10%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
                  +SDL   +IP+RV +V    FL+    +     +  L       + ++     
Sbjct: 108 ALFAIIVVSDLRYMLIPDRVLVVFAALFLIERLFIPFLPWMDMLIGAAVGFLLLLLIAVL 167

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
           +   MGGGDVKL        GW    L+F    A+ G ++ +  + +  +   +P     
Sbjct: 168 SKGGMGGGDVKLFAVLGFVLGWKMVLLAFFL-AALYGTVIGLVGMALGHVRRGVP----- 221

Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
                     +P+  AI++G L ++        A + L
Sbjct: 222 ----------MPFAPAIALGTLTAFFFGEAMVRAYLSL 249


>gi|323499924|ref|ZP_08104883.1| hypothetical protein VISI1226_15791 [Vibrio sinaloensis DSM 21326]
 gi|323315165|gb|EGA68217.1| hypothetical protein VISI1226_15791 [Vibrio sinaloensis DSM 21326]
          Length = 168

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
           F L+  A+SD     IPN + I+ L   +    +           L+ G  +F       
Sbjct: 7   FVLLMIAVSDAREHRIPNVLLILTLVLCVAKMLVQPTLSPSFTEALMGGGAMFFGALVLH 66

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
              +M  GDVKLL     W GW    +    ++A+ 
Sbjct: 67  LLRVMAPGDVKLLGVVGFWLGWG-HLMDISLWIAVA 101


>gi|83720542|ref|YP_442982.1| CpaA2 pilus assembly protein [Burkholderia thailandensis E264]
 gi|167620128|ref|ZP_02388759.1| peptidase A24A, prepilin type IV [Burkholderia thailandensis Bt4]
 gi|257139206|ref|ZP_05587468.1| CpaA2 pilus assembly protein, putative [Burkholderia thailandensis
           E264]
 gi|83654367|gb|ABC38430.1| probable CpaA2 pilus assembly protein , putative [Burkholderia
           thailandensis E264]
          Length = 161

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 9/148 (6%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++  + L   AL+DL +  +      ++   + + A          A H  +G I F   
Sbjct: 9   IVASWTLASLALADLRTRRLATFAVALVGALYGVQALAGAPGDGGFAPHAAIGAIAFAFG 68

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              F    + GGDVKL     +W G   ++            +  V I   R        
Sbjct: 69  AAMFRIGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGVVCIAARRAPRALAW- 127

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                   F     +PYG+A++ GG+++
Sbjct: 128 --------FAPARGVPYGVALAAGGVLA 147


>gi|283779852|ref|YP_003370607.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068]
 gi|283438305|gb|ADB16747.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068]
          Length = 189

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 17/171 (9%)

Query: 4   SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
           S M       +    L+ AA+ D F   +PN ++   + S  + +      +E +   L+
Sbjct: 10  SAMAEHWTVWLVTIVLILAAVIDGFELKVPNWITFPFIISGWIYSVAA-FGWEGLGWSLV 68

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
             ++   +    ++   MG GDVKLL     W   T +F +F     +      + +L  
Sbjct: 69  GTVVGLALLLPAYSIGGMGAGDVKLLAGVGAWMYGTHTFYAFCASAVVGALCAVIMVLAK 128

Query: 124 RMITNHIPIFGMFVPKSFLMKNK----------------IPYGIAISMGGL 158
           R    H   F + + +  ++ N                 +PYGI I++G +
Sbjct: 129 RAWKKHSDQFWLILNEIMVIGNPEKLAVIAAKRKPSMLLLPYGIPIAIGTI 179


>gi|225174802|ref|ZP_03728800.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1]
 gi|225169929|gb|EEG78725.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1]
          Length = 185

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 17/159 (10%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           +    ++D+    I N V +  L + L+   ++   Y      L        +    F F
Sbjct: 11  VTVCMITDIIERKIYNVVVLAGLVTALVLNVIVQGFYSGAVFTLAGFFTGIFLLVIPFVF 70

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV----------------FILT 122
             +G GDVK+L     + G+ P  +  L   AI+GG+ ++                F+  
Sbjct: 71  GGLGAGDVKMLGMIGAFTGY-PVVIQVLLVSAIVGGVFALYTMLRQGKMFKRLKTFFLGI 129

Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                    +    + +    KN IPYG+A+S+G +I Y
Sbjct: 130 FCAAAARKTVHMNNLDEKDAGKNAIPYGVALSVGVIIVY 168


>gi|222480546|ref|YP_002566783.1| peptidase A24A prepilin type IV [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453448|gb|ACM57713.1| peptidase A24A prepilin type IV [Halorubrum lacusprofundi ATCC
           49239]
          Length = 330

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 9/124 (7%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRV--------SIVMLGSFLLTAFLLGMDYELIAL 60
            A+ L       +AAL D+ +  +PNR+        +++++        L G +    A+
Sbjct: 7   DALRLFVVPVFAWAALQDVRTRRLPNRLWPPLYAFGALLLIWELAAIWPLAGFEEVRFAV 66

Query: 61  HLLVGLIVFI-ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
              + L+    + + F+     GG D K L + A+ F   P +      + ++   L VF
Sbjct: 67  RAAISLLFVAPLGYAFWYLGAFGGADAKALIAIAILFPTFPEYAVAGLILPLVDTQLGVF 126

Query: 120 ILTV 123
            LTV
Sbjct: 127 SLTV 130


>gi|149191272|ref|ZP_01869527.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio shilonii AK1]
 gi|148834870|gb|EDL51852.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio shilonii AK1]
          Length = 289

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 7/123 (5%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
           S   ++  F L+ A   D  + ++P+++++ ++   +  A L    +      +  + G 
Sbjct: 130 SLALIVFTFVLIGATFIDFDTMLLPDQLTLPLMWLGIALALLGISPISLTDSVIGAMAGY 189

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL +   W GW    L  +   +++G +  +  L 
Sbjct: 190 LCLWSTFWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPL-IVLMSSVVGVLFGLVQLR 248

Query: 123 VRM 125
           ++ 
Sbjct: 249 MQK 251


>gi|269101772|ref|ZP_06154469.1| leader peptidase (Prepilin peptidase)/N-methyltransferase
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161670|gb|EEZ40166.1| leader peptidase (Prepilin peptidase)/N-methyltransferase
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 292

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 7/130 (5%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML--GSFLLTAFLLGMDYELIALHLLVGL 66
           +   +   F L+     D+   ++P+++++ +L  G FL    +  +  +   +  + G 
Sbjct: 133 AVAVIFFTFALIALTFIDIDKMLLPDQITLPLLWAGIFLALLGISPVSLQDSVIGAIAGY 192

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F      + MG GD KLL +   W GW    +  +   ++ G I  + +L 
Sbjct: 193 LCLWSVFWIFKLLTKKDGMGYGDFKLLAALGAWLGWQMLPV-VVLLSSLAGAICGIILLK 251

Query: 123 VRMITNHIPI 132
           V+   +  P 
Sbjct: 252 VQKSDHQTPF 261


>gi|229084393|ref|ZP_04216673.1| Peptidase A24A domain protein [Bacillus cereus Rock3-44]
 gi|228698933|gb|EEL51638.1| Peptidase A24A domain protein [Bacillus cereus Rock3-44]
          Length = 240

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFF 76
            L+   ++DLF  +IPN + +    SFL+    + +  +    +   +  IV       F
Sbjct: 107 LLIIITMTDLFYMLIPNIILVFFACSFLIERIFIPLVPWWDSLIGGGIICIVLYFAQIIF 166

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
             N +GGGDVKLL+      G     +   F  ++    L + +L  RM       FG F
Sbjct: 167 -PNGLGGGDVKLLSLLGFIVGVKAILIVLCFASSLGLCFLGIGMLLKRMTARQPLPFGPF 225

Query: 137 VP 138
           + 
Sbjct: 226 IA 227


>gi|257784114|ref|YP_003179331.1| peptidase A24A prepilin type IV [Atopobium parvulum DSM 20469]
 gi|257472621|gb|ACV50740.1| peptidase A24A prepilin type IV [Atopobium parvulum DSM 20469]
          Length = 162

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 8/101 (7%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL-------LVGLIVFIIC 72
           + A++SD+    IPNR+ I+++  + +   +     E+I   L        V ++V I+ 
Sbjct: 11  ICASISDMRDRTIPNRIPIMLVFLWPIWLAVNKNRAEMIMSSLWSELFVICVLILVSIVT 70

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
                 + +GGGD+KL+ ST ++     +F+ FLF   ILG
Sbjct: 71  KFIGHMSSIGGGDIKLILSTCLYLEIKETFV-FLFLANILG 110


>gi|262393316|ref|YP_003285170.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           sp. Ex25]
 gi|262336910|gb|ACY50705.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           sp. Ex25]
          Length = 289

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
           F+   L   F L+ A   DL + ++P+++++ +  + +  A +    +  +   +  + G
Sbjct: 129 FTVALLFFTFILIAATFIDLDTMLLPDQLTLPLTWAGIALALVEISPVTLQDSVIGAIAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW  S    +   +++G +  +  L
Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGIVFGIIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|138896192|ref|YP_001126645.1| late competence protein ComC [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267705|gb|ABO67900.1| Late competence protein ComC [Geobacillus thermodenitrificans
           NG80-2]
          Length = 248

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 16/158 (10%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
                  +SDL   +IP+RV +V    FL+    +     +  L       + ++     
Sbjct: 105 ALFAIIVVSDLRYMLIPDRVLVVFAALFLIERLFIPFLPWMDMLIGAAVGFLLLLLIAVL 164

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
           +   MGGGDVKL        GW    L+F    A+ G ++ +  + +  +   +P     
Sbjct: 165 SKGGMGGGDVKLFAVLGFVLGWKMVLLAFFL-AALYGTVIGLVGMALGHVRRGVP----- 218

Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
                     +P+  AI++G L ++        A + L
Sbjct: 219 ----------MPFAPAIALGTLTAFFFGEAMVRAYLSL 246


>gi|115361030|ref|YP_778167.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
 gi|115286358|gb|ABI91833.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
          Length = 180

 Score = 45.7 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 60/160 (37%), Gaps = 14/160 (8%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L      + AA +D+ S  IPNR+  + L   L+    L          L      F + 
Sbjct: 13  LCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCTLHGIQAGALAWLAGAATGFGLL 72

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG-GILSVFILTVRMITNHIP 131
             F+    M  GDVKL+ +   W G   +F   L    + G G +   +L  RM      
Sbjct: 73  LPFYLLRGMAAGDVKLMLAIGAWVGAQMTFYIVLATFLVGGIGAIGFALLRGRMRQMCAN 132

Query: 132 IFGMFVPKS-------------FLMKNKIPYGIAISMGGL 158
           ++ +   +S             F     +PYG+AI+ G L
Sbjct: 133 VWALIAHRSTGAYAGATDGPVEFASVGALPYGVAIAAGTL 172


>gi|213536369|gb|ACJ51096.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 45.3 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +I+G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSIVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|213536359|gb|ACJ51091.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 45.3 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWTGIALALLEISPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|167589714|ref|ZP_02382102.1| Peptidase A24A, prepilin type IV [Burkholderia ubonensis Bu]
          Length = 116

 Score = 45.3 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 1/106 (0%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L   A+ DL +  + NR  +     + + A L+   +  +A H+  G  + ++     
Sbjct: 11  AVLASLAVQDLRARRLSNRAVLAFATLYFVAAALVRDGFAPVAGHVATGAAMLLLFGGLR 70

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
               +GGGDVKL  +  +W G     +  L  V   G    V  L 
Sbjct: 71  HAGWIGGGDVKLAAAVFLWAGPA-LAVPVLTIVGAGGLACGVAALA 115


>gi|83589201|ref|YP_429210.1| peptidase A24A, prepilin type IV [Moorella thermoacetica ATCC
           39073]
 gi|83572115|gb|ABC18667.1| Peptidase A24A, prepilin type IV [Moorella thermoacetica ATCC
           39073]
          Length = 175

 Score = 45.3 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 5/109 (4%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    +    ++D  S  +PN +++ ++    +      +  +     +      F++  
Sbjct: 7   LFFLSVTVVGVTDFISHYVPNFITLPLM----VAGIFYHLWADNWVASIFGASACFLLGL 62

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
             F    MGGGDVKL+ +   W G   + L+ +F  + +GG+  +  L 
Sbjct: 63  VMFTLGGMGGGDVKLMAAIGAWMGLYGA-LAVIFVASCIGGVWGLGKLV 110


>gi|51245389|ref|YP_065273.1| hypothetical protein DP1537 [Desulfotalea psychrophila LSv54]
 gi|50876426|emb|CAG36266.1| unknown protein [Desulfotalea psychrophila LSv54]
          Length = 191

 Score = 45.3 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 19/166 (11%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
            +F+     L  + ++DL +  IPN +++ +ML + L+   L G    L +L  +   + 
Sbjct: 12  VLFVSLLIALSVSTVTDLRARRIPNFITLSMMLIALLVHGLLSGFAGVLFSLQGIACGMG 71

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM--- 125
            ++         MG GDVKLL +     G   +F +FL  +AILGG+ S+ +L +R    
Sbjct: 72  LLL--IPHLLGGMGAGDVKLLAAVGAALGAAHTFYAFLV-IAILGGLTSIVMLIIRSTCL 128

Query: 126 ------------ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
                           +    + V +S L +  IPYG  I+ G L 
Sbjct: 129 ITLQRMGNAFLAAFGGVGAAALRVDRSTLQREGIPYGAVIAGGTLA 174


>gi|213536339|gb|ACJ51081.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 45.3 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +I+G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSIVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|142704|gb|AAA83365.1| late competence protein [Bacillus subtilis]
          Length = 248

 Score = 45.3 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 16/149 (10%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    L+  A++D+   +IPNR+ I  L        +  +D     L       +F+  
Sbjct: 100 VVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAV 159

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
                   +GGGD+KL        G      +F F V I     +  +LT R        
Sbjct: 160 IAAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAARVLTGR-------- 211

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                      +  +P+  AI+ G +++Y
Sbjct: 212 --------LAKRQPLPFAPAIAAGSILAY 232


>gi|260771889|ref|ZP_05880807.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           metschnikovii CIP 69.14]
 gi|260613181|gb|EEX38382.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           metschnikovii CIP 69.14]
          Length = 288

 Score = 45.3 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 7/124 (5%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
           S   L+  + L+ A   DL S ++P+++++ +L + +  A L    +      +  + G 
Sbjct: 130 SVALLLFTYVLIAATFIDLDSMLLPDQLTLPLLWAGISLALLNISPLSLNDAVIGAIAGY 189

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     +  F        MG GD KLL +   W GW    L  +   +++G +  +  L 
Sbjct: 190 LCLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQLLPL-IVLLSSLVGLVFGLIQLR 248

Query: 123 VRMI 126
           ++  
Sbjct: 249 LQKQ 252


>gi|218509312|ref|ZP_03507190.1| prepilin peptidase protein [Rhizobium etli Brasil 5]
          Length = 51

 Score = 45.3 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175
            +N I   G+ +P S L+  KIPYGIAI++GG +++P S +F  AL  L 
Sbjct: 2   QSNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESLK 51


>gi|172058129|ref|YP_001814589.1| peptidase A24A domain-containing protein [Exiguobacterium sibiricum
           255-15]
 gi|171990650|gb|ACB61572.1| peptidase A24A domain protein [Exiguobacterium sibiricum 255-15]
          Length = 252

 Score = 45.3 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF--AFNIMG 82
           SDL   +IPN++ +  L   L+  +L     E     ++ G + F + F  F  +   MG
Sbjct: 117 SDLAYMLIPNKILLFFLPISLIVRYLS--PLENWYNPIIGGFVGFFLLFVIFLASRQGMG 174

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
            GDVKL     ++ G     ++ LF  A +G I+ + +L  + +    PI 
Sbjct: 175 AGDVKLFGVLGIFLGPLHVVIA-LFVSAFVGSIIGLGLLGFKRVERKQPIP 224


>gi|299538329|ref|ZP_07051612.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Lysinibacillus fusiformis ZC1]
 gi|298725916|gb|EFI66508.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Lysinibacillus fusiformis ZC1]
          Length = 250

 Score = 45.3 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 18/156 (11%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
           +   V  +    LV   +SDL   +IP++V +  L   ++   L  +  +    +  +VG
Sbjct: 98  IELIVAFLFISLLVIIVVSDLAYMLIPDKVLVFFLPVLVIGRVLSPLTPWWDSLVGAVVG 157

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
             +  I     +   MGGGD+KL     +  G   + L+ LF  A++G I+ + +L+   
Sbjct: 158 FGILYIIAVL-SNGGMGGGDIKLFFLIGLVLGTIDTLLT-LFLAAVIGMIVGITMLSKNK 215

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                P               IP+G +I++  +I +
Sbjct: 216 QGRKTP---------------IPFGPSIALAAVIVF 236


>gi|197335376|ref|YP_002156985.1| bacterial Peptidase A24 N-terminal domain family protein [Vibrio
           fischeri MJ11]
 gi|197316866|gb|ACH66313.1| bacterial Peptidase A24 N-terminal domain family protein [Vibrio
           fischeri MJ11]
          Length = 295

 Score = 45.3 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
           F+   ++    L+     D+ + ++P+++++ +L S L  A +      L+   +     
Sbjct: 133 FAVAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192

Query: 68  VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
             I+   ++ F +      MG GD KLL +   W GW    L  +   +++G I+ V +L
Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-LILLSSVVGAIIGVIML 251

Query: 122 TVRM 125
           T + 
Sbjct: 252 TAQK 255


>gi|15669025|ref|NP_247829.1| hypothetical protein MJ_0835.2 [Methanocaldococcus jannaschii DSM
           2661]
 gi|3219922|sp|P81324|Y83C_METJA RecName: Full=Uncharacterized protein MJ0835.2
 gi|2826330|gb|AAB98835.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 339

 Score = 45.3 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + + V++I    L+ AA++D+   +IP++ +I M+   L+      + Y     + ++  
Sbjct: 3   LLNVVYIINFILLLLAAITDIKERIIPHKYTIAMIIINLV------VGYYYFGFNAIIAF 56

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
              +I     +   MGGGDVKL T+ A  F +  SF+ ++
Sbjct: 57  FSTLILCLILSIG-MGGGDVKLFTALAPIFAYPNSFVFYI 95


>gi|120602161|ref|YP_966561.1| peptidase A24A, prepilin type IV [Desulfovibrio vulgaris DP4]
 gi|120562390|gb|ABM28134.1| peptidase A24A, prepilin type IV [Desulfovibrio vulgaris DP4]
          Length = 188

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           +    L+ A ++D+ S  IPN ++   ML        + G+D   +        +   + 
Sbjct: 8   VLGVILLIAVVTDIRSMRIPNWLTFPAMLMGLGYHTAMRGLD--GLLFSAGGLALGGALM 65

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              F   +MG GDVKL+ +   + G     LS   + ++ GG+ ++ +L   +      +
Sbjct: 66  LLPFILRVMGAGDVKLMAAAGAFLG-ARGVLSAFIWTSLAGGLYALVVLLFHLPQLMAIL 124

Query: 133 FGMFVPKSFLMKNK----IP-----------YGIAISMG 156
             +     F+        IP           YG+AI+ G
Sbjct: 125 RAVVASVRFMSVTGKLSYIPATKDARLPRLCYGVAIAAG 163


>gi|84516641|ref|ZP_01004000.1| hypothetical protein SKA53_08516 [Loktanella vestfoldensis SKA53]
 gi|84509677|gb|EAQ06135.1| hypothetical protein SKA53_08516 [Loktanella vestfoldensis SKA53]
          Length = 163

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
           ++ A SDL    IPN     ++ SF +   +  + +     H L   ++ +I F      
Sbjct: 20  IYVAWSDLRQMKIPNVAVYALVISFAVLGLIA-LPFGQYLWHWLHLPVMLVIGFILNMAR 78

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA-ILGGILSVFILTVRMITNHIPIFGMF 136
           ++G GD K   + A +   T   L    F A +L G+++  ++ +  +   +P +  +
Sbjct: 79  VLGAGDAKFTAAAAPFIATTDLPLVLPLFAACLLAGLVTHRLVKISPLRRLVPHWQSW 136


>gi|213536357|gb|ACJ51090.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +      + G
Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWTGIALALLEISPVSLQDSVFGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|213536335|gb|ACJ51079.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|213536351|gb|ACJ51087.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|187927690|ref|YP_001898177.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12J]
 gi|187724580|gb|ACD25745.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12J]
          Length = 181

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 18/178 (10%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M ++ ++ S +  +     + AA  D     IPN ++     + L     +         
Sbjct: 1   MNDATLLSSMIGPVAMGVALIAAAIDAQHRRIPNWLTFGAWLAALPLQVAVHGFGNGALE 60

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF- 119
                L    I   F+    M  GDVKL+ +   W G   +F        ++GGI ++  
Sbjct: 61  WTCGWLTGLAIFLPFYLLRGMAAGDVKLMAAVGAWLGAFMAF-EIAMATFVIGGIWALLF 119

Query: 120 ----------------ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                           +L      +           +      +PYG+AI+ G +   
Sbjct: 120 TLRHKRMAQLRRNLRDVLLTSGQVSREAGAPTPQADASWSVGTLPYGVAIAAGTIAVL 177


>gi|213536349|gb|ACJ51086.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|213536373|gb|ACJ51098.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|218708105|ref|YP_002415726.1| putative prepilin leader peptidase [Vibrio splendidus LGP32]
 gi|218321124|emb|CAV17074.1| putative prepilin leader peptidase [Vibrio splendidus LGP32]
          Length = 145

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 16/148 (10%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
            ++        +  D+   +IPN V + +    +       +             IV  +
Sbjct: 8   LILLATMAAIVSYQDIRYRIIPNGVVVAVALLGVFY-----ICQTEKFELFYNFFIVLAV 62

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
               F FN++  GD KLL + ++        L+ +  +   GG L++             
Sbjct: 63  GAVLFYFNVIAAGDSKLLAAFSLMVSPNMMLLA-VNVILFAGGTLAI----------TQW 111

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLI 159
           + G     S  +   +PYG+ I +G L+
Sbjct: 112 VLGKTTGNSEWINRGVPYGVPICLGSLL 139


>gi|213536367|gb|ACJ51095.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 45.3 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|320155370|ref|YP_004187749.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           vulnificus MO6-24/O]
 gi|213536341|gb|ACJ51082.1| prepilin peptidase [Vibrio vulnificus]
 gi|319930682|gb|ADV85546.1| leader peptidase (Prepilin peptidase) / N-methyltransferase [Vibrio
           vulnificus MO6-24/O]
          Length = 289

 Score = 44.9 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|213536333|gb|ACJ51078.1| prepilin peptidase [Vibrio vulnificus]
 gi|213536337|gb|ACJ51080.1| prepilin peptidase [Vibrio vulnificus]
 gi|213536343|gb|ACJ51083.1| prepilin peptidase [Vibrio vulnificus]
 gi|213536363|gb|ACJ51093.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 44.9 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|90411209|ref|ZP_01219222.1| hypothetical protein P3TCK_06572 [Photobacterium profundum 3TCK]
 gi|90328055|gb|EAS44376.1| hypothetical protein P3TCK_06572 [Photobacterium profundum 3TCK]
          Length = 168

 Score = 44.9 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 15/162 (9%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-----LLVG 65
           + L+    ++++AL DL    IPN   +++    L  A +  +    +  H     L+  
Sbjct: 1   MNLVILSVVIYSALYDLRENKIPNSAVVILALFGLTQAIISSLFIGSLDFHHLTDALIGF 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT--- 122
           ++  ++        + G GD KLL +  +  G+ P+ L  +    I  G+LS+ ++    
Sbjct: 61  IVGLLVSIILHYLGLFGAGDAKLLAALGIVVGF-PNILLLISMSVIFSGVLSLLLMICKH 119

Query: 123 -----VRMITNHIPIFGMFVPKSFLMK-NKIPYGIAISMGGL 158
                 R   N I       P+S  +  N +P G AI +  L
Sbjct: 120 EFIPNFRRWANIIFYQFYQSPQSDSIAVNAVPMGGAILLATL 161


>gi|153838706|ref|ZP_01991373.1| bacterial Peptidase A24 N- domain family [Vibrio parahaemolyticus
           AQ3810]
 gi|149747866|gb|EDM58744.1| bacterial Peptidase A24 N- domain family [Vibrio parahaemolyticus
           AQ3810]
          Length = 289

 Score = 44.9 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
           F+   +   F L+ A   DL + ++P+++++ +  + +  A   +  +  +   +  + G
Sbjct: 129 FTVALIFFTFVLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW  S    +   +++G I  +  L
Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLVQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|328474167|gb|EGF44972.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio parahaemolyticus 10329]
          Length = 289

 Score = 44.9 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
           F+   +   F L+ A   DL + ++P+++++ +  + +  A   +  +  +   +  + G
Sbjct: 129 FTVALIFFTFVLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW  S    +   +++G I  +  L
Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLVQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|213536345|gb|ACJ51084.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 44.9 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|83338438|gb|ABC11889.1| PilD [Aliivibrio fischeri]
          Length = 295

 Score = 44.9 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
           F+   ++    L+     D+ + ++P+++++ +L S L  A +      L+   +     
Sbjct: 133 FAVAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192

Query: 68  VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
             I+   ++ F +      MG GD KLL +   W GW    L  +   +++G I+ V +L
Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-IILLSSVVGAIIGVIML 251

Query: 122 TVRM 125
           T + 
Sbjct: 252 TAQK 255


>gi|27364987|ref|NP_760515.1| prepilin peptidase [Vibrio vulnificus CMCP6]
 gi|7674103|sp|Q56740|LEP4_VIBVU RecName: Full=Type 4 prepilin-like proteins leader
           peptide-processing enzyme; Includes: RecName:
           Full=Leader peptidase; AltName: Full=Prepilin peptidase;
           Includes: RecName: Full=N-methyltransferase
 gi|1213333|gb|AAA91206.1| VvpD [Vibrio vulnificus]
 gi|3228678|gb|AAC23601.1| type IV prepilin leader peptidase [Vibrio vulnificus]
 gi|27361133|gb|AAO10042.1| Leader peptidase (Prepilin peptidase) [Vibrio vulnificus CMCP6]
 gi|213536361|gb|ACJ51092.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 44.9 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +      + G
Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWTGIALALLEISPVSLQDSVFGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|77462445|ref|YP_351949.1| hypothetical protein RSP_1900 [Rhodobacter sphaeroides 2.4.1]
 gi|221638308|ref|YP_002524570.1| peptidase A24A, prepilin type IV [Rhodobacter sphaeroides KD131]
 gi|77386863|gb|ABA78048.1| hypothetical protein RSP_1900 [Rhodobacter sphaeroides 2.4.1]
 gi|221159089|gb|ACM00069.1| Peptidase A24A, prepilin type IV [Rhodobacter sphaeroides KD131]
          Length = 167

 Score = 44.9 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 5/153 (3%)

Query: 3   ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
                 +    +     ++ A SD+    IPN+  + +   FL+    + +  +      
Sbjct: 7   TPAPAAAVFLPLVLPIALWVAWSDMKFMKIPNKAVLALAAVFLVAGPFV-LPLDDWLWRW 65

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           L  L+V  + F      ++G GD K   + A++       L+   F A L G  +    +
Sbjct: 66  LHLLVVLAVGFLMNMGRLIGAGDAKFAAAMALFVALEDLRLALALFAASLLGAFA----S 121

Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
            R +    P            +   P G+A++ 
Sbjct: 122 HRGLGLLGPFRRATADWESWRRRDFPMGLALAG 154


>gi|253701289|ref|YP_003022478.1| prepilin peptidase [Geobacter sp. M21]
 gi|251776139|gb|ACT18720.1| Prepilin peptidase [Geobacter sp. M21]
          Length = 274

 Score = 44.9 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
             +    LV     DL   +IP+ +++  ++  F  + F+  + +    + ++ G    +
Sbjct: 121 LFVFCSALVVVTFIDLEHQIIPDAITLPGIVVGFAASFFIPQLGWLNSLIGIVAGGGSLL 180

Query: 71  ICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
           +    +      + MGGGD+KLL     + GW  + +  +F  +++G ++ V ++  R  
Sbjct: 181 LIAYVYQAVAKKDGMGGGDIKLLAMMGAFLGW-KAIIFIIFTASLIGSVIGVSVMLARKE 239

Query: 127 TNHIPIF 133
            + + I 
Sbjct: 240 NSSLAIP 246


>gi|213536353|gb|ACJ51088.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 44.9 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|256832572|ref|YP_003161299.1| peptidase A24A domain-containing protein [Jonesia denitrificans DSM
           20603]
 gi|256686103|gb|ACV08996.1| peptidase A24A domain protein [Jonesia denitrificans DSM 20603]
          Length = 274

 Score = 44.9 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSI----VMLGSFLLTAFLLGMDYELIALHLLVGLI 67
            L      V  A  DL +  +PN++ +    V+         L+G ++  +    L GLI
Sbjct: 117 LLFLTAVGVALAFIDLDTHKLPNKIVLPAYPVVAVLVCFATLLMGWEWTSVIRAALGGLI 176

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAV---WFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           ++I+ F       MG GDVKL     +   W GW+   +       +LGG+ ++ +L +R
Sbjct: 177 LYILYFVLCVIGGMGFGDVKLAGLLGISLGWLGWSYLIVGGFLPF-VLGGLYAIVLLVLR 235

Query: 125 MI 126
            +
Sbjct: 236 RV 237


>gi|170701160|ref|ZP_02892133.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10]
 gi|170133941|gb|EDT02296.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10]
          Length = 180

 Score = 44.9 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 14/160 (8%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L      + AA +D+ S  IPNR+  + L   L+    L          L      F + 
Sbjct: 13  LCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCALHGIQAGALAWLAGAATGFGLL 72

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG-GILSVFILTVRMITNHIP 131
             F+    M  GDVKL+ +   W G   +F   L    + G G +   +L  RM      
Sbjct: 73  LPFYLLRGMAAGDVKLMLAIGAWVGAQMTFYIVLATFLVGGIGAIGFALLRGRMRQMCAN 132

Query: 132 IFGMFVPKSFLMKNK-------------IPYGIAISMGGL 158
           ++ +   +S                   +PYG+AI+ G L
Sbjct: 133 VWALIAHRSTGAYAGATDGPVEVASVGALPYGVAIAAGTL 172


>gi|213536355|gb|ACJ51089.1| prepilin peptidase [Vibrio vulnificus]
 gi|213536365|gb|ACJ51094.1| prepilin peptidase [Vibrio vulnificus]
 gi|213536371|gb|ACJ51097.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 44.9 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITVALIGFTLVLISATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGTMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|134291860|ref|YP_001115629.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4]
 gi|134135049|gb|ABO59374.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4]
          Length = 179

 Score = 44.5 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 16/161 (9%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L     ++ AA +DL S  IPNR+ +  L   L+    L      +   L        + 
Sbjct: 12  LCVTLLVIVAASTDLASRRIPNRLVVAGLAGALVAQCALHGVPAGVLAWLAGAATGLGLL 71

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV-----RMIT 127
             F+    M  GDVKL+ +   W G   +F   +    + GGI ++    +     RM T
Sbjct: 72  LPFYLLRGMAAGDVKLMLAIGAWVGAQMTFY-IVLATFVAGGIGALGFALLRGRMRRMWT 130

Query: 128 NHIPIFGMFVPKSFLMKNK----------IPYGIAISMGGL 158
           N   +                        +PYG+AI++G L
Sbjct: 131 NVWMLVAHRAAAPLAGATDGPVESASVGALPYGVAIAVGTL 171


>gi|229918379|ref|YP_002887025.1| peptidase A24A domain protein [Exiguobacterium sp. AT1b]
 gi|229469808|gb|ACQ71580.1| peptidase A24A domain protein [Exiguobacterium sp. AT1b]
          Length = 250

 Score = 44.5 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 12  FLIPPFC--LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            L   F   L+  A+SDL + ++PN +        LL  +L G  +    +  L+G  + 
Sbjct: 102 LLAFAFLSTLLALAMSDLSTMLVPNVILKFTAPVLLLLTYLTGASWWNPLVGALLGFSLL 161

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
              F   +   +G GDVKL T   +  G     ++ LF  +++G I+ + ++  + I   
Sbjct: 162 ATVFFV-SKGGLGAGDVKLFTMIGLVLGPRDVLVA-LFLSSLIGAIVGIGLMMTKKIGRK 219

Query: 130 IPIF 133
            PI 
Sbjct: 220 QPIP 223


>gi|149188848|ref|ZP_01867138.1| Hypothetical membrane protein [Vibrio shilonii AK1]
 gi|148837268|gb|EDL54215.1| Hypothetical membrane protein [Vibrio shilonii AK1]
          Length = 113

 Score = 44.5 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            ++  I    F F  MGGGDVKL+   A+      + ++ L+   I GG+L+V  L+   
Sbjct: 23  FLLITILLTTFYFGWMGGGDVKLIAILALALPSVITVVA-LWLTMIFGGVLAVARLSQYR 81

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
            +         +  +   +  +PYG+AISMG 
Sbjct: 82  FS---------LISAKKDQRGLPYGVAISMGF 104


>gi|28899300|ref|NP_798905.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|260363756|ref|ZP_05776531.1| bacterial peptidase A24 N-terminal domain protein [Vibrio
           parahaemolyticus K5030]
 gi|260879008|ref|ZP_05891363.1| bacterial peptidase A24 N-terminal domain protein [Vibrio
           parahaemolyticus AN-5034]
 gi|28807524|dbj|BAC60789.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|308089548|gb|EFO39243.1| bacterial peptidase A24 N-terminal domain protein [Vibrio
           parahaemolyticus AN-5034]
 gi|308111141|gb|EFO48681.1| bacterial peptidase A24 N-terminal domain protein [Vibrio
           parahaemolyticus K5030]
          Length = 289

 Score = 44.5 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
           F+   +   F L+ A   DL + ++P+++++ +  + +  A   +  +  +   +  + G
Sbjct: 129 FTVALIFFTFFLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW  S    +   +++G I  +  L
Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLVQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|213536347|gb|ACJ51085.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 44.5 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITIALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|83718194|ref|YP_440453.1| peptidase [Burkholderia thailandensis E264]
 gi|167579111|ref|ZP_02371985.1| peptidase, putative [Burkholderia thailandensis TXDOH]
 gi|167617226|ref|ZP_02385857.1| peptidase, putative [Burkholderia thailandensis Bt4]
 gi|257141101|ref|ZP_05589363.1| peptidase, putative [Burkholderia thailandensis E264]
 gi|83652019|gb|ABC36083.1| peptidase, putative [Burkholderia thailandensis E264]
          Length = 179

 Score = 44.5 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 16/161 (9%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L      V AA  DL S  IPNR+ ++ L   L+    L   +      L        + 
Sbjct: 12  LCVALLAVVAASIDLASRRIPNRLIVLGLAGALVAQCALPGPHTGFVAWLAGAATGAGLL 71

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
             F+    M  GDVKL+ +   W G T   L       ++GG  ++ ++  R +   +  
Sbjct: 72  LPFYLLRGMAAGDVKLMLAIGAWVGPT-LALHIALATFVVGGAWALAVVVKRGLLRKLLA 130

Query: 133 ---------------FGMFVPKSFLMKNKIPYGIAISMGGL 158
                                        +PYG+AI++G L
Sbjct: 131 NLRHLLASAALLRDPSAARAAPEIESVGMLPYGVAIAIGTL 171


>gi|254506804|ref|ZP_05118944.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
           parahaemolyticus 16]
 gi|219550385|gb|EED27370.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
           parahaemolyticus 16]
          Length = 168

 Score = 44.5 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
           F L   A+SD     IPN + ++ L + +    +        +       ++F       
Sbjct: 7   FILFIVAVSDAKEHRIPNALLLLTLIACVARMIVEPDLTPSWSAAATGFAVMFAGSLMLH 66

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
              +M  GDVKLL     W GW   F + L+  A
Sbjct: 67  LLRVMAPGDVKLLAVIGFWLGWGQLFDATLWIAA 100


>gi|163801329|ref|ZP_02195228.1| hypothetical protein 1103602000598_AND4_10689 [Vibrio sp. AND4]
 gi|159174818|gb|EDP59618.1| hypothetical protein AND4_10689 [Vibrio sp. AND4]
          Length = 154

 Score = 44.5 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 14/135 (10%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAF----LLGMDYELIALHLLVGLIVFIICFCFFAF 78
           A  D+    I N+  + ++    +  F      G  + L      + + V +  F   A 
Sbjct: 17  AYEDVKVRKIYNKRIVTLIFLMFIQYFYKLYFKGEQFNLSWFDFCIYITVSLGFFTLGAL 76

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
             +G GDVKL+    ++ G     L FLF + ++GG+L++         +   I   +  
Sbjct: 77  RFLGMGDVKLIMVMLIFIGIDDYSL-FLFHMTLIGGVLAI---------SQKAILNHYFN 126

Query: 139 KSFLMKNKIPYGIAI 153
                   +PY I I
Sbjct: 127 IFGFSSEGVPYAIPI 141


>gi|225414586|ref|ZP_03761775.1| hypothetical protein CLOSTASPAR_05809 [Clostridium asparagiforme
           DSM 15981]
 gi|225041885|gb|EEG52131.1| hypothetical protein CLOSTASPAR_05809 [Clostridium asparagiforme
           DSM 15981]
          Length = 269

 Score = 44.5 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 61/173 (35%), Gaps = 24/173 (13%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
            +  +L+    L+  AL+DL S  IP+R  +  +  +   A +         +  L+G I
Sbjct: 106 AAPYYLVFSLILLGVALTDLESYEIPDRFHVAAILWWCAGALITEQPLGSYIIKGLLGGI 165

Query: 68  VFIICFC--------FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
           +                    +GGGDVKL   T ++ G   + L+ +    +   + ++ 
Sbjct: 166 LIAGGMLAVSLVFDRLLGRESLGGGDVKLFFVTGLYLGPAVNLLNVIISCLLALILAALL 225

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG-LISYPDSYLFKVAL 171
             + R   +                  IP+G AI+ G  L       L    L
Sbjct: 226 PDSGRKPGDPAA---------------IPFGPAIAAGTWLCLLGGGPLVSWYL 263


>gi|319937244|ref|ZP_08011651.1| prepilin peptidase [Coprobacillus sp. 29_1]
 gi|319807610|gb|EFW04203.1| prepilin peptidase [Coprobacillus sp. 29_1]
          Length = 261

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           + +  +    L+   + D  + +IPN + I  L   +++   L +      +   + + V
Sbjct: 110 TLISFVFSMILLTICMIDYDTMIIPNGLVICCLIVAIVSVPFLDLSLMDRIIGFFI-ISV 168

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            +        +  GGGD+KLL  + +  GW    +     V I G      +LT R
Sbjct: 169 PLYIMNLIIPDCFGGGDIKLLAVSGLLMGWINVLIGMFIAVLIAGIYAGYLLLTHR 224


>gi|258625146|ref|ZP_05720063.1| leader peptidase PilD [Vibrio mimicus VM603]
 gi|258582597|gb|EEW07429.1| leader peptidase PilD [Vibrio mimicus VM603]
          Length = 304

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
           F+   L+  + L+ A   DL + ++P+++++ +L S +  A   L  +      +  + G
Sbjct: 142 FAVAALLFSYVLIAATFIDLDTMLLPDQLTLPLLWSGIALALFGLSPVSLTDAVIGAMAG 201

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW    +  +   +++G +  +  L
Sbjct: 202 YLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGLLFGLIQL 260

Query: 122 TVRMI 126
            ++  
Sbjct: 261 RLQKQ 265


>gi|167584954|ref|ZP_02377342.1| peptidase A24A, prepilin type IV [Burkholderia ubonensis Bu]
          Length = 175

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 16/156 (10%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            ++ AA +DL    IPNR+  V LG  L    +L   +      L        +    + 
Sbjct: 13  LVIVAASTDLTCRRIPNRLLAVGLGGALTAQCVLLGPWAGALAWLAGAATGLALLLPLYL 72

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI----- 132
            + M  GDVKL+ +   W G   +    +    + GG+ ++ ++  R     +       
Sbjct: 73  MHGMAAGDVKLMLTIGAWVGPALAVW-IVLATFVAGGVGALAVVLWRGRARQLFANVRYL 131

Query: 133 ----------FGMFVPKSFLMKNKIPYGIAISMGGL 158
                         +P        +PYG+AI+ G L
Sbjct: 132 LARSALRQQGLAADMPAQVASVGALPYGVAIAAGTL 167


>gi|163733534|ref|ZP_02140977.1| hypothetical protein RLO149_17823 [Roseobacter litoralis Och 149]
 gi|161393322|gb|EDQ17648.1| hypothetical protein RLO149_17823 [Roseobacter litoralis Och 149]
          Length = 165

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 5/141 (3%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           + P CL + A +DL    I N+  + +   +++    +    E          I   + F
Sbjct: 15  VLPLCL-YVAYTDLALMKIINKAVVTLGAIYVILGPFVLPSIEAYLWGFAQFAIALGVGF 73

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
              A   MG GD K +   A +          L F  I    L   +LT R         
Sbjct: 74  VLNAIGAMGAGDAKFIAFAAPFIAPGDLPRVVLLFTCI----LLAALLTHRGARASRLRD 129

Query: 134 GMFVPKSFLMKNKIPYGIAIS 154
                 S+    + P G+A+ 
Sbjct: 130 LAPDWVSWSQGKRFPLGLALG 150


>gi|83943931|ref|ZP_00956388.1| membrane protein, putative [Sulfitobacter sp. EE-36]
 gi|83845178|gb|EAP83058.1| membrane protein, putative [Sulfitobacter sp. EE-36]
          Length = 164

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 8/153 (5%)

Query: 5   KMVFSAVFLIPPFCL---VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
           ++  SA     PF L    +   +DL    I N   I +   F+L   +  + ++    H
Sbjct: 2   EITSSAALWFLPFALPLCAYTIYTDLAFMRITNVTVIALAAVFVLIGPIA-LPFDSYLWH 60

Query: 62  LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
           LL  ++  ++     A  +MG GD K + +         +     FF+A+    L    +
Sbjct: 61  LLAMVVALVVGIFMNAGGLMGAGDAKFIAAA----TPFIALGDVRFFMALFMATLVAAYI 116

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAIS 154
             R               S+    K P G+A+ 
Sbjct: 117 IHRAAKYSPLRKLAPQWVSWHEAKKFPMGLALG 149


>gi|167463704|ref|ZP_02328793.1| hypothetical protein Plarl_14304 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322384403|ref|ZP_08058089.1| hypothetical protein PL1_0935 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150761|gb|EFX44221.1| hypothetical protein PL1_0935 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 155

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLV 64
           M+  A  L+    +  A +SD+ ++ IPN ++I  +    +  A + GM    +   +  
Sbjct: 1   MIQEACLLV---IICTAFVSDIRTSAIPNYITIGGLATGVIFQAAVYGMT--GLFQAITA 55

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
               F++    + F  +G GDVKL  +   W    P  LS + +  +  G + + IL  R
Sbjct: 56  TATGFLLLLLLYMFGALGAGDVKLFAAVGAW-SSIPFVLSSMMYSLLYAGFIGLGILLWR 114

Query: 125 M-ITNHIPIFGMFVPKSFLMK 144
             +T       M+  ++ L++
Sbjct: 115 RELTRRFFGLVMWFFRAILLR 135


>gi|225575017|ref|ZP_03783627.1| hypothetical protein RUMHYD_03098 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037768|gb|EEG48014.1| hypothetical protein RUMHYD_03098 [Blautia hydrogenotrophica DSM
           10507]
          Length = 232

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 47/119 (39%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + S  + +    L+  A +D  S +IP  +++ +    L+   L   ++    L      
Sbjct: 71  LESGFYCLMASALLILAFTDWNSYLIPPEINLFLFCLGLVHLVLDWGEWPSYLLGAAGVG 130

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           I   I F       +GGGDVKL+ +  +  G+     +FL        I S+ +   R 
Sbjct: 131 IPLWIVFEISKGRSLGGGDVKLMAAVGLLLGFWRGTFTFLIACMAAAFIQSLCLSAGRK 189


>gi|229824692|ref|ZP_04450761.1| hypothetical protein GCWU000182_00040 [Abiotrophia defectiva ATCC
           49176]
 gi|229791021|gb|EEP27135.1| hypothetical protein GCWU000182_00040 [Abiotrophia defectiva ATCC
           49176]
          Length = 209

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 38/106 (35%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           V S +F +    L+   + D  +  IP  ++I +L    L   L         +      
Sbjct: 58  VESVIFSLFTSALLVLTVIDWRTYEIPISINIFILVLGCLRVVLDFNHLRGYLIGFFAVS 117

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
            V  + +       +GGGD+KL+    +  GW    L F     + 
Sbjct: 118 SVLFLIYILTKGRAIGGGDIKLMAVAGLLLGWQLVVLGFFIGCILA 163


>gi|54302293|ref|YP_132286.1| hypothetical protein PBPRB0613 [Photobacterium profundum SS9]
 gi|46915715|emb|CAG22486.1| hypothetical protein PBPRB0613 [Photobacterium profundum SS9]
          Length = 165

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 15/154 (9%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-----LLVGLIVFIICF 73
           +++AAL D+    IPN   +V++   L  A +  ++   +  H     LL  ++   +  
Sbjct: 6   VIYAALYDIRENKIPNHAIVVLIFLGLAQAIISSLEIGSLDFHYLTDALLGLIVGLFVSI 65

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT--------VRM 125
                 + G GD KLL +  +  G+ P+ L  +    +  G LS+ ++          R 
Sbjct: 66  TLHYLGLFGAGDAKLLAALGIVVGF-PNILLLISMSVVFSGALSLLLMICKHEFIPNFRR 124

Query: 126 ITNHIPIFGMFVPKSFLMK-NKIPYGIAISMGGL 158
             N I       PK+  +  N +P G AI +  L
Sbjct: 125 WANIIVYQFYQSPKADSIAINAVPMGGAILLATL 158


>gi|50083622|ref|YP_045132.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Acinetobacter sp. ADP1]
 gi|49529598|emb|CAG67310.1| type 4 prepilin-like proteins leader peptide processing enzyme
           (Protein secretion protein XCPA)[Includes: Leader
           peptidase (Prepilin peptidase); N-methyltransferase ]
           [Acinetobacter sp. ADP1]
          Length = 286

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+R ++ + G    + +F + +         +VG +   I
Sbjct: 138 LVLTWILIALTFIDFDTQLLPDRFTLTLAGLGLAVNSFTIYVSPTQAIWGYIVGFLCLWI 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G  P  L  +  ++   G +   IL  +   
Sbjct: 198 VYYIFKLITKKEGMGYGDFKLLAALGAWMG--PMMLPLIVLLSSCVGAIIGIILLRKRQE 255

Query: 128 NHIPIFG 134
           N    FG
Sbjct: 256 NQPFAFG 262


>gi|52786668|ref|YP_092497.1| hypothetical protein BLi02936 [Bacillus licheniformis ATCC 14580]
 gi|163119575|ref|YP_080080.2| DNA-binding protein [Bacillus licheniformis ATCC 14580]
 gi|18266361|gb|AAL67522.1|AF459915_2 late competence protein ComC [Bacillus licheniformis]
 gi|52349170|gb|AAU41804.1| ComC [Bacillus licheniformis ATCC 14580]
 gi|145903084|gb|AAU24442.2| DNA-binding protein [Bacillus licheniformis ATCC 14580]
          Length = 249

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            + L     L+   +SD+   +IP+ V    L  F +  FL+ ++    +L   +   + 
Sbjct: 98  VIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGGML 157

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
            +         +G GDVKL     +  G     L+F    A  G +L +  L    +  +
Sbjct: 158 PLLTLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAA-AGTVLGLIALLAGKLKKN 216

Query: 130 IPIF 133
            P+ 
Sbjct: 217 EPMP 220


>gi|319647202|ref|ZP_08001424.1| late competence protein ComC [Bacillus sp. BT1B_CT2]
 gi|317390549|gb|EFV71354.1| late competence protein ComC [Bacillus sp. BT1B_CT2]
          Length = 249

 Score = 44.1 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            + L     L+   +SD+   +IP+ V    L  F +  FL+ ++    +L   +   + 
Sbjct: 98  VIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGGML 157

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
            +         +G GDVKL     +  G     L+F    A  G +L +  L    +  +
Sbjct: 158 PLLTLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAA-AGTVLGLIALLAGKLKKN 216

Query: 130 IPIF 133
            P+ 
Sbjct: 217 EPMP 220


>gi|330816712|ref|YP_004360417.1| Peptidase A24A, prepilin type IV [Burkholderia gladioli BSR3]
 gi|327369105|gb|AEA60461.1| Peptidase A24A, prepilin type IV [Burkholderia gladioli BSR3]
          Length = 166

 Score = 44.1 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 8/169 (4%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+      I    +   A++D     IPN + +  L   L++A      +    L  ++G
Sbjct: 1   MILLLSVGIFLAWVALVAIADFRYRRIPNSLVVAGLICALVSASTGHNPFGNPLLGAIIG 60

Query: 66  L-IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
             + F+  F FFAF +MG  DVK+      W G    F  ++F  +++ GI ++ I+ + 
Sbjct: 61  AMVAFVGLFPFFAFRMMGAADVKVFVVLGAWCGVIQLFWCWVF-ASLVAGIHALGIMYLT 119

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
             +            +       PY         +  P +      ++ 
Sbjct: 120 GASVRSLWQRNGAAFALGGFRGAPY------AAFLVIPAAAWLVFQIVT 162


>gi|298674644|ref|YP_003726394.1| peptidase A24B, FlaK domain-containing protein [Methanohalobium
          evestigatum Z-7303]
 gi|298287632|gb|ADI73598.1| Peptidase A24B, FlaK domain protein [Methanohalobium evestigatum
          Z-7303]
          Length = 255

 Score = 44.1 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRV--SIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
          +F   PF L ++  SDL +  +PN++   +++ G   +   L+   +  +   L+  + +
Sbjct: 7  IFFFLPFLL-YSCYSDLKTRRVPNKLWSFMLVPGMIFVIYDLINYGFAHLVHLLISFVFI 65

Query: 69 FIICFCFFAFNIMGGGDVKLL 89
          F   +  F+FN  GG D KL+
Sbjct: 66 FGFVYVLFSFNAFGGADAKLM 86


>gi|258620852|ref|ZP_05715886.1| leader peptidase PilD [Vibrio mimicus VM573]
 gi|258586240|gb|EEW10955.1| leader peptidase PilD [Vibrio mimicus VM573]
          Length = 291

 Score = 44.1 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64
           VF+   L   + L+ A   D  + ++P+++++ +L   +  A   L  +      +  + 
Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTMLLPDQLTLPLLWGGIALALFGLSPVSLTDAVIGAMA 187

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW    +  +   +++G +  +  
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGLLFGLIQ 246

Query: 121 LTVRMI 126
           L ++  
Sbjct: 247 LRLQKQ 252


>gi|320352430|ref|YP_004193769.1| type 4 prepilin peptidase 1 [Desulfobulbus propionicus DSM 2032]
 gi|320120932|gb|ADW16478.1| type 4 prepilin peptidase 1 [Desulfobulbus propionicus DSM 2032]
          Length = 260

 Score = 44.1 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 21/154 (13%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
            V+ +    L+     D+   +IP+R+S+  ++  F  +  +  + ++  AL +L G  +
Sbjct: 102 LVYFVFSAALLVIIFIDIHHQIIPDRISLPGIVIGFAGSLVIDQITWQQSALGILFGGGI 161

Query: 69  FIIC----FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
                           MGGGD+KLL     + GW  S L  +F  ++ G ++    +   
Sbjct: 162 LYAVAWGYMALTKREGMGGGDIKLLAMIGAFLGW-QSLLYVIFSSSVAGCVVGGIAM--- 217

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
                       V +    + +IP+G  +++  L
Sbjct: 218 ------------VKQGRGGQTRIPFGPFLAIAAL 239


>gi|260775492|ref|ZP_05884389.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608673|gb|EEX34838.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 289

 Score = 44.1 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
           F+   L   F L+ A   D  + ++P++++  ++ S +  A L    +  +   +  + G
Sbjct: 129 FAIALLFFTFVLIAATFIDFDTMLLPDQLTFPLIWSGIALALLDFSPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +++G +  +  L
Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QYLPVIVLLSSLVGLVFGIIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|312136650|ref|YP_004003987.1| peptidase a24a domain protein [Methanothermus fervidus DSM 2088]
 gi|311224369|gb|ADP77225.1| Peptidase A24A domain protein [Methanothermus fervidus DSM 2088]
          Length = 372

 Score = 44.1 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT--AFLLGMDYELIALHLL 63
           M+ +   +I      +AA SD    +IPN+++   L   LL   A+ + M       ++L
Sbjct: 1   MIPTICVIIGIIVTFYAAYSDFKWGIIPNKLTFSTLLLGLLLNTAWAVMMSNIPFLTNML 60

Query: 64  VGLI-VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
           + +  VF IC+ F+      GGDVKLLT+ A    +  S        
Sbjct: 61  IFVGSVFAICYFFYWIGAWSGGDVKLLTALAALVPYRYSITDVTVTA 107


>gi|327401464|ref|YP_004342303.1| peptidase A24B, FlaK domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316972|gb|AEA47588.1| Peptidase A24B, FlaK domain protein [Archaeoglobus veneficus SNP6]
          Length = 234

 Score = 44.1 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 2/145 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLV 64
           M+      +    L+ A   DL    +PNR+  +ML  FL    +   +    +   L  
Sbjct: 1   MIALIKIAVALVFLLEACKMDLKERRVPNRLWKLMLLVFLPLDIIEYYLQPFSLTFALFQ 60

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
              V   C+  +   + GG D K +   A+ F   PSF  F      LG +L+   L   
Sbjct: 61  FAFVAAFCYALYYLGLYGGADAKAIMCLAIAFPAYPSFFVFPLLNEGLG-MLAFTTLANS 119

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149
           ++     +  + V  +     + PY
Sbjct: 120 VLAAPFLVAVLLVRNALSGNLEFPY 144


>gi|262170628|ref|ZP_06038306.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           mimicus MB-451]
 gi|261891704|gb|EEY37690.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           mimicus MB-451]
          Length = 291

 Score = 44.1 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
           F+   L+  + L+ A   DL + ++P+++++ +L   +  A   L  +      +  +VG
Sbjct: 129 FAVAALLFSYVLIAATFIDLDTMLLPDQLTLPLLWGGIALALFGLSPVPLTDAVIGAMVG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW    +  +   +++G I  +  L
Sbjct: 189 YLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQL 247


>gi|187923642|ref|YP_001895284.1| peptidase A24A prepilin type IV [Burkholderia phytofirmans PsJN]
 gi|187714836|gb|ACD16060.1| peptidase A24A prepilin type IV [Burkholderia phytofirmans PsJN]
          Length = 166

 Score = 44.1 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 2/153 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLV 64
           M  S    +        A+ D     I N V +  +  +F    F  G     +    + 
Sbjct: 1   MNVSVGIFLFIAWAAVVAIGDCRRRRISNSVVLAGLAAAFCCALFQCGPFGISLTQSGIG 60

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            LI       FFA  +MG  DVK+      W G   + L      ++   + ++++L   
Sbjct: 61  ALIGLAALLPFFALGVMGAADVKVFAVLGAWCGM-HALLGLWMAASLAASVHALWLLITT 119

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
                              K   PY   +++  
Sbjct: 120 RTRLASLARQPGATFELAGKASTPYAACLAVAA 152


>gi|148263857|ref|YP_001230563.1| peptidase A24A domain-containing protein [Geobacter uraniireducens
           Rf4]
 gi|146397357|gb|ABQ25990.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Geobacter uraniireducens Rf4]
          Length = 263

 Score = 44.1 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 6/129 (4%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
               +    LV     DL   +IP+ +S+  ++  F  +  L  + ++   + +L+G   
Sbjct: 103 LFLFLFCSALVVITFIDLEHQIIPDVISLPGIVIGFAASFLLPWLGWKNSLIGILIGGGS 162

Query: 69  FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            +I    + F      MGGGD+KLL     + GW  S    +F  +++G I+ + ++ V+
Sbjct: 163 LLIVAYGYQFLTKKEGMGGGDIKLLAMMGAFLGWR-SVPFIIFVASLVGSIIGITLMVVQ 221

Query: 125 MITNHIPIF 133
              + + I 
Sbjct: 222 KKDSKLAIP 230


>gi|260574608|ref|ZP_05842611.1| peptidase A24A prepilin type IV [Rhodobacter sp. SW2]
 gi|259023025|gb|EEW26318.1| peptidase A24A prepilin type IV [Rhodobacter sp. SW2]
          Length = 166

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 11/157 (7%)

Query: 6   MVFSAVFLIPPFCL---VFAALSDLFSAMIPNRVSIVMLGSFLL----TAFLLGMDYELI 58
           M  +    + PF L   V+ A SD+    IPN+  + +   +L+          +  +  
Sbjct: 1   MTPTVALTLLPFVLPIAVWVAWSDMKFMKIPNKAVLALAAVYLVVGGGLVAFGALGLKTW 60

Query: 59  ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
                +G IV  + F      ++G GD K   + A +F         L F A     L  
Sbjct: 61  GWGWALGAIVLGVGFVVTILKMVGAGDAKFAAAMAPFFVGGDLRFVLLLFSA----CLIA 116

Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
             +  R +     +  M          K P G+A+S 
Sbjct: 117 AFVGHRAMRALPAVRRMTPDWESWTHAKFPMGLALSA 153


>gi|310640819|ref|YP_003945577.1| peptidase a24a prepilin type iv [Paenibacillus polymyxa SC2]
 gi|309245769|gb|ADO55336.1| Peptidase A24A prepilin type IV [Paenibacillus polymyxa SC2]
          Length = 170

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 2/117 (1%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           ++++    L  A ++DL S  IPN++++  +   LL   L G  +      +      F 
Sbjct: 4   MYIVCGVLLAIALVTDLRSMKIPNKLTLPGIAVGLLFNTLFG-GWHGFLFAIAGLGTGFG 62

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
                +    +G GDVKL      W G   ++ S L +     GI+ + IL  R  T
Sbjct: 63  FMLILYWMGAIGAGDVKLFGLIGAWTGAAFAWQSAL-YSIFFAGIIGIGILLWRRET 118


>gi|297618083|ref|YP_003703242.1| peptidase A24A prepilin type IV [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145920|gb|ADI02677.1| peptidase A24A prepilin type IV [Syntrophothermus lipocalidus DSM
           12680]
          Length = 170

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           I    L  A   D+    IPN + +  + + L      G  +  +   L    +  ++  
Sbjct: 4   IMVGLLALAVYFDVRERRIPNWLVLTGVLTALGWHLYQG-GFSGLVFSLKGLGLGLLLLM 62

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
             FA   MG GDVKLL     + G    F +FL ++A++GG++++ +L 
Sbjct: 63  LPFAMGGMGAGDVKLLGMVGAFKGVVFVFNAFL-WMALIGGLIALAVLI 110


>gi|323489980|ref|ZP_08095201.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Planococcus donghaensis MPA1U2]
 gi|323396276|gb|EGA89101.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Planococcus donghaensis MPA1U2]
          Length = 251

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 60/149 (40%), Gaps = 16/149 (10%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    LV   +SD+   +IP++V +      +   F++ +D    +L         +  
Sbjct: 104 ILFVSLLVIITVSDIAYMLIPDKVLLPFAVVLIGLRFVIPLDPWWNSLLGAAVGFSLLFL 163

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
               +   MGGGD+KL     +  G   + ++ LFF + +G ++ +  L +       P 
Sbjct: 164 IAIVSKGGMGGGDIKLFFVIGLVLGLGGTLMT-LFFASFIGAVVGIIQLRITKKGRKSP- 221

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                         IP+G +I+   +I Y
Sbjct: 222 --------------IPFGPSIAAAAIIVY 236


>gi|213536331|gb|ACJ51077.1| prepilin peptidase [Vibrio vulnificus]
          Length = 289

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65
            +   +     L+ A   DL + ++P+++++ +  + +  A L    +  +   +  + G
Sbjct: 129 ITVALIGLTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW       +   +I+G I  +  L
Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSIVGLIFGLIQL 247

Query: 122 TVRMI 126
            ++  
Sbjct: 248 RLQKQ 252


>gi|260220288|emb|CBA27676.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 258

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 7/113 (6%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGLIVFII 71
           +   CLV  AL D  + ++P+ +++ ++   L+ A L    +         + G +    
Sbjct: 108 VFSACLVTLALIDWDTTLLPDDITLPLVWLGLVAAALQWTPVGLSTALWGAVAGYLSLWS 167

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
            +  F        MG GD KL  +   WFGW P  +  +   +++G I+ + +
Sbjct: 168 IYWLFKLVTGKEGMGYGDFKLFAALGAWFGW-PVLIPMILMASVIGAIVGIAM 219


>gi|296133926|ref|YP_003641173.1| peptidase A24A prepilin type IV [Thermincola sp. JR]
 gi|296032504|gb|ADG83272.1| peptidase A24A prepilin type IV [Thermincola potens JR]
          Length = 184

 Score = 43.7 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 2/108 (1%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
             D+    I N +++      L T  + G     +   +   L+   +    +  N+MG 
Sbjct: 22  YYDIREQKIKNFITLPAAVLGLATNLMEG-GLTGLLFSIKGWLVPVAVLMVLYRINVMGA 80

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
           GD+KL  +     G   +  SF+F V   GG++++ IL  + +     
Sbjct: 81  GDIKLFAAIGAVMGLPFTAYSFVFSV-YTGGVIALVILLKKRVFIRRM 127


>gi|157960240|ref|YP_001500274.1| prepilin peptidase [Shewanella pealeana ATCC 700345]
 gi|157845240|gb|ABV85739.1| Prepilin peptidase [Shewanella pealeana ATCC 700345]
          Length = 303

 Score = 43.7 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 21/161 (13%)

Query: 5   KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLL 63
             +  A+  +  FCL+     DL   ++P+++++ +L    ++             +   
Sbjct: 144 PTLEFALTALLTFCLIALTGIDLDEMLLPDQITLPLLWLGLIINLGGTFATTSDALIGAA 203

Query: 64  VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
            G +     F  F      + MG GD KLL     WFGW    L  +   +++G ++ + 
Sbjct: 204 AGYLSLWCVFWLFKLLTGKDGMGYGDFKLLAVFGAWFGWQVLPL-VILLSSLVGAVVGIA 262

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
           ++  + + +  P               IP+G  I+  G I+
Sbjct: 263 LIVFKKLNHGNP---------------IPFGPYIAAAGWIA 288


>gi|147677781|ref|YP_001211996.1| type II secretory pathway, prepilin signal peptidase PulO and
           related peptidases, prepilin signal peptidase PulO and
           related peptidases [Pelotomaculum thermopropionicum SI]
 gi|146273878|dbj|BAF59627.1| type II secretory pathway, prepilin signal peptidase PulO and
           related peptidases, prepilin signal peptidase PulO and
           related peptidases [Pelotomaculum thermopropionicum SI]
          Length = 170

 Score = 43.7 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 18/161 (11%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             LV   L+DL +  I N V +  L   L T    G         +   L+   + F  F
Sbjct: 9   IVLVVCTLTDLCNKKIYNFVLLPALVIALFTHLATG-GLPQGWWSVKGLLLGIALLFIPF 67

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT-------------- 122
           +   +G GDVK+L       G    F +FL   A+ GGI+S  +L               
Sbjct: 68  SAGGIGAGDVKMLGVIGALKGPEFVFKAFL-AGAVAGGIISAALLIKNKKMLATVQLLLL 126

Query: 123 -VRMITNHIPIFGMFVPKSFLMK-NKIPYGIAISMGGLISY 161
            +      +P          + + N IPYG AI++G L +Y
Sbjct: 127 NLYFFLTGVPRIKYRAESPDIPQENVIPYGAAIAIGTLAAY 167


>gi|188592029|ref|YP_001796627.1| prepilin peptidase transmembrane protein [Cupriavidus taiwanensis
           LMG 19424]
 gi|170938403|emb|CAP63390.1| putative PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN [Cupriavidus
           taiwanensis LMG 19424]
          Length = 157

 Score = 43.7 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 4/151 (2%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           +I          +D     +PN +  + + +  L           +A  L    +   + 
Sbjct: 1   MIAALLCAATLYTDFAYRRVPNLLLAIAVLALGLALIAGQATEPPLAARLTGAGLGLAVT 60

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH--- 129
              +A   M  GDVK LT   ++ G     ++++    +      + +   R        
Sbjct: 61  LPVYALGRMAAGDVKFLTVAGLFTGPQGLVVAWVVGSLLGLVHALLALALARRTPAADHA 120

Query: 130 -IPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
                   +   F +   IPY   +++G L 
Sbjct: 121 LHSQAPSLLTAQFSLARGIPYAAYLAVGVLA 151


>gi|288553595|ref|YP_003425530.1| aspartate peptidase [Bacillus pseudofirmus OF4]
 gi|288544755|gb|ADC48638.1| peptidase A24A domain protein, aspartate peptidase [Bacillus
           pseudofirmus OF4]
          Length = 253

 Score = 43.7 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 17/139 (12%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
           +SD+   +IP+++ +     FLL    +  +D    +L         ++     +   MG
Sbjct: 116 VSDIRYMLIPDKILLFFTPFFLLLRLTVAPLDPWWSSLVGAAVGFGLLLLIAVISRGGMG 175

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142
           GGD+KL     +  GW    L+F F   + G I++   +    +                
Sbjct: 176 GGDIKLFAVLGLVLGWQDVLLAFFFSC-LYGTIIAGIGMAAGKVKR-------------- 220

Query: 143 MKNKIPYGIAISMGGLISY 161
            K  IP+G  I +G L +Y
Sbjct: 221 -KKPIPFGPFIVLGALTAY 238


>gi|109810283|gb|ABC11892.2| PilD [Aliivibrio fischeri]
          Length = 295

 Score = 43.7 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 7/124 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
           F+   ++    L+     D+ + ++P ++++ +L S L  A +      L+   +     
Sbjct: 133 FAXAAVLFTLVLIALTFIDIDTMLLPEQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192

Query: 68  VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
             I+   ++ F +      MG GD KLL +   W GW    L  +   +++G I+ V +L
Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-XILLSSVVGAIIGVIML 251

Query: 122 TVRM 125
           T + 
Sbjct: 252 TAQK 255


>gi|332560329|ref|ZP_08414651.1| Peptidase A24A, prepilin type IV [Rhodobacter sphaeroides WS8N]
 gi|332278041|gb|EGJ23356.1| Peptidase A24A, prepilin type IV [Rhodobacter sphaeroides WS8N]
          Length = 167

 Score = 43.7 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 5/153 (3%)

Query: 3   ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
                 +    +     ++ A SD+    IPN+  + +   FL+   ++ +  +      
Sbjct: 7   TPAPAAAVFLPLVLPIALWVAWSDMKFMKIPNKAVLALAAVFLVAGPVV-LPLDDWLWRW 65

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           L  L+V  + F      ++G GD K   + A +       L+   F A L G  +    +
Sbjct: 66  LHLLVVLAVGFLMNMGRLIGAGDAKFAAAMAPFVALEDLRLALALFAASLLGAFA----S 121

Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
            R +    P            +   P G+A++ 
Sbjct: 122 HRGLGLLGPFRRATADWESWRRRDFPMGLALAG 154


>gi|169827250|ref|YP_001697408.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Lysinibacillus sphaericus C3-41]
 gi|168991738|gb|ACA39278.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
           (Late competence protein comC) [Lysinibacillus
           sphaericus C3-41]
          Length = 248

 Score = 43.7 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 18/156 (11%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
           +   V L     LV   +SD    +IP+++ +  L   ++   L  +  +    L  LVG
Sbjct: 96  MEFIVALSFISLLVIIVVSDFTYLLIPDKILLFFLPILVIGRVLSPLTPWWDSLLGSLVG 155

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
             +        +   MGGGD+KL     +  G   + L+ LF  AI+G I+ + +L  R 
Sbjct: 156 FGILYSIAVL-SKGGMGGGDIKLFFLIGLVLGTIHTLLT-LFLAAIIGMIVGIVVLLKRK 213

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                P               IP+G +I++   I Y
Sbjct: 214 QGRKTP---------------IPFGPSIALAANIVY 234


>gi|291529318|emb|CBK94904.1| type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family
           A24A [Eubacterium rectale M104/1]
          Length = 253

 Score = 43.7 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 6/143 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + S ++      L+  ++ D  +  IP  ++I +L   +L  FL   ++    +      
Sbjct: 101 LTSIIYCFLTSALIVLSVIDWRTYEIPFGINIFILVLGILHVFLDHDNWSEYVIGFFCVS 160

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV--- 123
           +   I         +GGGDVKL+    +  GW    L+F     I+G ++ +  + V   
Sbjct: 161 LFLEILLLVSGGRAIGGGDVKLMACAGLAIGWQNITLAFFLGC-IIGSVIHLIRMKVTNA 219

Query: 124 --RMITNHIPIFGMFVPKSFLMK 144
             R+        G+F+   +  K
Sbjct: 220 GNRLAMGPYLATGIFISMLWGEK 242


>gi|317471421|ref|ZP_07930773.1| peptidase A24 domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316901036|gb|EFV22998.1| peptidase A24 domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 258

 Score = 43.3 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 1/117 (0%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           ++ +   LI    L      D+ +  IPN   + +     ++ FL       + +     
Sbjct: 104 LLKTVFLLITGALLTAVTFVDIDTMEIPNGFVLALACLGAVSLFLFPEVSLPMRVIGCFA 163

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           + V ++          GGGD+KL+ +  +  G   +  +F F V + GG+  +++L 
Sbjct: 164 VSVPMLLLTVLIPGAFGGGDIKLMAAAGILLGAKLTGTAFFFSV-LAGGVYGIYLLA 219


>gi|289209346|ref|YP_003461412.1| prepilin peptidase [Thioalkalivibrio sp. K90mix]
 gi|288944977|gb|ADC72676.1| Prepilin peptidase [Thioalkalivibrio sp. K90mix]
          Length = 296

 Score = 43.3 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFL-LTAFLLGMDYELIALHLLVGLI 67
           + + LI    L+ AA  D  + ++P+++++ +L   L +       D +   +    G +
Sbjct: 140 ALLALIFTGVLIAAAGIDARTTLLPDQLTLPLLWLGLLVNIPGTFTDLQSAVIGAAAGYL 199

Query: 68  VFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
           V  + F  F        MG GD KLL +   W GW  +    L   +++G ++ + ++ +
Sbjct: 200 VLWLIFHGFRLATGKEGMGYGDFKLLAALGAWLGW-QALPVILLLASLVGAVVGILLILL 258

Query: 124 RMITNHIPIF 133
           R    +IPI 
Sbjct: 259 RGRDRNIPIP 268


>gi|291525222|emb|CBK90809.1| type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family
           A24A [Eubacterium rectale DSM 17629]
          Length = 253

 Score = 43.3 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 6/143 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + S ++      L+  ++ D  +  IP  ++I +L   +L  FL   ++    +      
Sbjct: 101 LTSIIYCFLTSALIVLSVIDWRTYEIPFGINIFILVLGILHVFLDHDNWSEYVIGFFCVS 160

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV--- 123
           +   I         +GGGDVKL+    +  GW    L+F     I+G ++ +  + V   
Sbjct: 161 LFLEILLLVSGGRAIGGGDVKLMACAGLAIGWQNITLAFFLGC-IIGSVIHLIRMKVTNA 219

Query: 124 --RMITNHIPIFGMFVPKSFLMK 144
             R+        G+F+   +  K
Sbjct: 220 GNRLAMGPYLAAGIFISMLWGEK 242


>gi|330446855|ref|ZP_08310506.1| type IV leader peptidase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491046|dbj|GAA05003.1| type IV leader peptidase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 289

 Score = 43.3 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM--LGSFLLTAFLLGMDYELIALHLLVGL 66
           S   +   F L+     D+   ++P+++++ +   G  L  A +  +      +  + G 
Sbjct: 130 SQAVIFFTFALIALTFIDIDKMLLPDQITLPLMWAGIVLSVAGISPVSLTDSVIGAMAGY 189

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSF-LFFVAILGGILSVFIL 121
           +     F  F      + MG GD KLL +   W GW    L F +   +++G +  + +L
Sbjct: 190 LSLWSVFWVFKLLTKKDGMGYGDFKLLAALGAWLGW--QLLPFVVLLSSLVGALCGLVLL 247

Query: 122 TVRMITNHIPI 132
            ++   N  P 
Sbjct: 248 KMQDADNQTPF 258


>gi|167622408|ref|YP_001672702.1| prepilin peptidase [Shewanella halifaxensis HAW-EB4]
 gi|167352430|gb|ABZ75043.1| Prepilin peptidase [Shewanella halifaxensis HAW-EB4]
          Length = 303

 Score = 43.3 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 21/161 (13%)

Query: 5   KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLL 63
             +  A+  +  FCLV     DL   ++P+++++ +L    ++             +   
Sbjct: 144 PTLEFALTSLLTFCLVALTGIDLDEMLLPDQITLPLLWLGLIINLSGTFATTSDALIGAA 203

Query: 64  VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
            G +     F  F      + MG GD KLL     WFGW    L  +   +++G ++ + 
Sbjct: 204 AGYLSLWSVFWLFKLLTGKDGMGYGDFKLLAVFGAWFGWQVLPL-VILLSSLVGAVVGIA 262

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
           ++  + + +  P               IP+G  I+  G I+
Sbjct: 263 LIVFKKLNHGNP---------------IPFGPYIAAAGWIA 288


>gi|126461323|ref|YP_001042437.1| peptidase A24A, prepilin type IV [Rhodobacter sphaeroides ATCC
           17029]
 gi|126102987|gb|ABN75665.1| peptidase A24A, prepilin type IV [Rhodobacter sphaeroides ATCC
           17029]
          Length = 167

 Score = 43.3 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 5/153 (3%)

Query: 3   ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
                 +    +     ++ A SD+    IPN+  + +   FL+   ++ +  +      
Sbjct: 7   TPAPAAAVFLPLVLPIALWVAWSDMKFMKIPNKAVLALAAVFLVAGPVV-LPLDDWLWRW 65

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           L  L+V +  F      ++G GD K   + A +       L+   F A L G  +    +
Sbjct: 66  LHLLVVLVAGFLMNMGRLIGAGDAKFAAAMAPFVALEDLRLALALFAASLLGAFA----S 121

Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
            R +    P            +   P G+A++ 
Sbjct: 122 HRGLGLLEPFRRATADWESWRRRDFPMGLALAG 154


>gi|300692329|ref|YP_003753324.1| prepilin peptidase transmembrane protein [Ralstonia solanacearum
           PSI07]
 gi|299079389|emb|CBJ52060.1| putative prepilin peptidase transmembrane protein [Ralstonia
           solanacearum PSI07]
          Length = 175

 Score = 43.3 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 15/163 (9%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L     +  AA+ D+ +  +PN + I  L   LL   L           LL       + 
Sbjct: 10  LSLAALVTTAAVWDVRTRRVPNWLVISGLAIALLVQCLEHGVLTGSWTWLLGTATGLGLL 69

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              +    MG GDVKL+ +   +               I+GG L++ ++ +R   +    
Sbjct: 70  LGIYLLGGMGAGDVKLMGAVGAFMAPA-GVFHVALVTFIVGGALALAMMLMRGNAHRSFA 128

Query: 133 FGMFVPKSF--------------LMKNKIPYGIAISMGGLISY 161
               +  S                   ++PY +AI++G L+  
Sbjct: 129 NVSALLLSLPFGGKTTAAGQDKKDRTTRLPYAVAIAIGTLLVL 171


>gi|221067358|ref|ZP_03543463.1| peptidase A24A prepilin type IV [Comamonas testosteroni KF-1]
 gi|220712381|gb|EED67749.1| peptidase A24A prepilin type IV [Comamonas testosteroni KF-1]
          Length = 196

 Score = 43.3 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 19/154 (12%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY-ELIALHLLVGLIVFIICFCFFAFNIMG 82
           +SDL +  IPNR++   +   LL   L    +       L    +  ++    +  + MG
Sbjct: 34  ISDLRTRRIPNRLTFGGIALALLYGLLAPHPHGGGFFWALGGMALGLVLMLPLYLLHAMG 93

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF- 141
           GGDVKL+     + G   +    + FV I GG+ ++       +   +        +   
Sbjct: 94  GGDVKLMAMVGSFIGP-EATWQAVIFVFITGGVAAIGYALWHRMAGKLLRNSAEAVQLLY 152

Query: 142 ----------------LMKNKIPYGIAISMGGLI 159
                               K+PYG++I++G L 
Sbjct: 153 INVAAGIAPDARSSSAHSVGKLPYGVSIALGTLA 186


>gi|290559758|gb|EFD93082.1| peptidase A24A prepilin type IV [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 276

 Score = 43.3 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 83/189 (43%), Gaps = 24/189 (12%)

Query: 6   MVFSAVFLIPPFC---LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
           MV+S  +LI  F    L+ A+++D+    +P+ +S V++    L      +    I+  +
Sbjct: 1   MVYSINYLIFIFVIGVLILASITDIKKREVPDSISYVLIAGSSLLVLAYSISNNTISNLV 60

Query: 63  LVGLIVFIIC---FCFFAFNIMGGGDVKLLTSTAVWFG---------WTPSFLSFLFFVA 110
            + L + ++    +  +     GGGDVK+L   ++ F          +   F++ L F  
Sbjct: 61  YMPLSILLVTGFSYFMYKAGQWGGGDVKILFGISIVFTSINLFSNRSFIALFINILLFGG 120

Query: 111 ILG--GILSVFILTVRMITNHIPIFGMFVPKSFLMKN-------KIPYGIAISMGGLISY 161
           I G  G ++V ++ ++ + NH  ++ +      L+          +P    I++   + +
Sbjct: 121 IYGILGTIAVGVIKIKKLKNHFKVYDIPFFIVTLLTMVLSFFFIPVPLNFFIAIAAFMLF 180

Query: 162 PDSYLFKVA 170
              ++F VA
Sbjct: 181 SMRFVFLVA 189


>gi|301165537|emb|CBW25108.1| putative membrane protein [Bacteriovorax marinus SJ]
          Length = 168

 Score = 43.3 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           V+L     L F A  D+    I N   ++ +  +LL+ F     Y       +  +  FI
Sbjct: 5   VYLFLVVQLFFVASHDVTHKKISNFWPLINISFYLLSVFFFPDHYNFGWSTFVFPIAFFI 64

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFF---VAILGGILSVFILTVRMIT 127
           +    F   IMG GD K L S  +    +    +F+F      ++G  L +  +  R   
Sbjct: 65  VGIFLFTLKIMGAGDSKYLLSFYLLIPVSLHETAFIFLAYSTVVVGLSLLLTNIIKRSDI 124

Query: 128 NHIPI 132
             + I
Sbjct: 125 IKLAI 129


>gi|296158791|ref|ZP_06841620.1| peptidase A24A prepilin type IV [Burkholderia sp. Ch1-1]
 gi|295890996|gb|EFG70785.1| peptidase A24A prepilin type IV [Burkholderia sp. Ch1-1]
          Length = 166

 Score = 43.3 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FII 71
           L+        A+SD     I N + +  L +    A      + +      +G ++    
Sbjct: 8   LLFVAWAAVVAISDCRWRRISNSIVVAGLAAAFGCALFQCGPFGISPARAGIGALIGLAA 67

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
              FFA  +MG  DVK+      W G   +        ++  G+ ++++L          
Sbjct: 68  LLPFFALGVMGAADVKIFAVLGAWCGM-HALPGLWMAASLAAGVHALWLLITTRTRLAGL 126

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGG 157
           +           K   PY   ++   
Sbjct: 127 VRQSGSTFELAGKASTPYAACLTAAA 152


>gi|167746590|ref|ZP_02418717.1| hypothetical protein ANACAC_01300 [Anaerostipes caccae DSM 14662]
 gi|167653550|gb|EDR97679.1| hypothetical protein ANACAC_01300 [Anaerostipes caccae DSM 14662]
          Length = 258

 Score = 43.3 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 1/117 (0%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           ++ +   LI    L      D+ +  IPN   + +     ++ FL       + +     
Sbjct: 104 LLKTVFLLITGALLTAVTFVDIDTMEIPNGFVLALACLGAVSLFLFPEISLPMRVIGCFA 163

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           + V ++          GGGD+KL+ +  +  G   +  +F F V + GG+  +++L 
Sbjct: 164 VSVPMLLLTVLIPGAFGGGDIKLMAAAGILLGAKLTGAAFFFSV-LAGGVYGIYLLA 219


>gi|194017199|ref|ZP_03055811.1| putative A24 family unassigned peptidase [Bacillus pumilus ATCC
           7061]
 gi|194011067|gb|EDW20637.1| putative A24 family unassigned peptidase [Bacillus pumilus ATCC
           7061]
          Length = 239

 Score = 43.3 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 1/111 (0%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
             S   +I     V A +SDL    +PN + +     F++   L  +         L+  
Sbjct: 95  FESLFLVILCSLFVIAVVSDLLYMRVPNELFLFFFPLFVIYRTLEPLLIWWEGAASLIFC 154

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
           I+      +F  N +GG D+KL +  A  FG+ P  L  LF   I G + +
Sbjct: 155 ILLFSSLDYFKPNSLGGADMKLFSVLAFCFGFKPFLL-MLFLSCIAGMVYA 204


>gi|238924538|ref|YP_002938054.1| prepilin peptidase [Eubacterium rectale ATCC 33656]
 gi|238876213|gb|ACR75920.1| prepilin peptidase [Eubacterium rectale ATCC 33656]
          Length = 253

 Score = 43.3 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 6/143 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + S ++      L+  ++ D  +  IP  ++I +L   +L  FL   ++    +      
Sbjct: 101 LTSIIYCFLTSALIVLSVIDWRTYEIPLGINIFILVLGILHVFLDHDNWSEYVIGFFCVS 160

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV--- 123
           +   I         +GGGDVKL+    +  GW    L+F     I+G ++ +  + V   
Sbjct: 161 LFLEILLLVSGGRAIGGGDVKLMACAGLAIGWQNITLAFFLGC-IIGSVIHLIRMKVTNA 219

Query: 124 --RMITNHIPIFGMFVPKSFLMK 144
             R+        G+F+   +  K
Sbjct: 220 GNRLAMGPYLAAGIFISMLWGEK 242


>gi|84385707|ref|ZP_00988738.1| putative membrane protein [Vibrio splendidus 12B01]
 gi|84379687|gb|EAP96539.1| putative membrane protein [Vibrio splendidus 12B01]
          Length = 147

 Score = 43.3 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 16/147 (10%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           + +    C +    +D++   + +R  I+++   +++          +   +   LI+F 
Sbjct: 8   LSIAISICNLIVFYNDIYFRTVKHRFIIIIIILGVISLVFS----NNVIWQIGASLIIFC 63

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           + F  +  NI+GGGDVKL+ +  +      S ++ L    ILGG+  + +    +IT+  
Sbjct: 64  VFFMLWMMNIIGGGDVKLIGALFIGIAPEYSIIA-LATAGILGGVQILLMWVSSLITHKD 122

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGG 157
           P             N IPY I + + G
Sbjct: 123 PF-----------SNGIPYTIPLGLSG 138


>gi|261211522|ref|ZP_05925810.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           sp. RC341]
 gi|260839477|gb|EEX66103.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           sp. RC341]
          Length = 291

 Score = 43.3 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
           VF+   L   + L+ A   DL + ++P+++++ +L   +  A L    +      +  + 
Sbjct: 128 VFAVALLFFSYVLIAATFIDLDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW    +  +   +++G I  +  
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246

Query: 121 L 121
           L
Sbjct: 247 L 247


>gi|77919733|ref|YP_357548.1| prepilin peptidase [Pelobacter carbinolicus DSM 2380]
 gi|77545816|gb|ABA89378.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Pelobacter carbinolicus DSM 2380]
          Length = 259

 Score = 43.3 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGL--- 66
           V+ +    +V  +  DL   +IP+ +S+  ++  FLL+  +  + ++   L +L+G    
Sbjct: 103 VYWLFVASMVTISFIDLDHKIIPDVISLPGIVLGFLLSFAVPWLTWQDSILGILLGGGSL 162

Query: 67  -IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +V  + +       MGGGDVKLL     + GW  + L  +F  ++ G ++ V ++  + 
Sbjct: 163 YLVAKVYYWMTHVEGMGGGDVKLLAMIGAFLGW-KAILPVIFLGSLSGALVGVPLMLYKR 221

Query: 126 ITNHIPIF 133
               + I 
Sbjct: 222 AGGKLAIP 229


>gi|323495862|ref|ZP_08100930.1| Type II secretory pathway, prepilin signal peptidase PulO [Vibrio
           sinaloensis DSM 21326]
 gi|323319078|gb|EGA72021.1| Type II secretory pathway, prepilin signal peptidase PulO [Vibrio
           sinaloensis DSM 21326]
          Length = 200

 Score = 43.3 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 7/124 (5%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
           S   L   F L+ A   DL + ++P+ +++ ++ + +  A +    +  +   +  + G 
Sbjct: 41  SMALLFFTFTLIAATFIDLDTMLLPDSLTLPLMWTGITLALVGISPISLQNAVIGAIAGY 100

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     +  F      + MG GD KLL +   W GW    +  + F +++G +L +  L 
Sbjct: 101 LSLWSVYWLFKLITGKDGMGYGDFKLLAALGAWLGWQQLPM-IILFSSLVGLVLGLIQLR 159

Query: 123 VRMI 126
           ++  
Sbjct: 160 LKRQ 163


>gi|254521133|ref|ZP_05133188.1| family A24A unassigned peptidase [Stenotrophomonas sp. SKA14]
 gi|219718724|gb|EED37249.1| family A24A unassigned peptidase [Stenotrophomonas sp. SKA14]
          Length = 176

 Score = 43.3 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL--IALHLLVGLIVFIICFCFFAFNI 80
           A+SDL++  +PN   +      +                 H+    +  +    F+A   
Sbjct: 11  AISDLYARRVPNAWLLAACALAVPLLIAGQFSTPRLPWGSHVAGAALGLVALLPFYAVRW 70

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
           MG GDVK      +      + L      ++  G+ ++ +L  R +   +P
Sbjct: 71  MGAGDVKFFAVLGL-LLGLEALLPIWVTASLGAGLHALVVLASRRLGPMLP 120


>gi|293400855|ref|ZP_06645000.1| leader peptidase (prepilin peptidase) [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305881|gb|EFE47125.1| leader peptidase (prepilin peptidase) [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 231

 Score = 43.0 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 12/130 (9%)

Query: 12  FLIPPFCLVFAALS--DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            +I    ++F A++  D  +  IPN + I ++    + A L+ + +  I L L  G+  F
Sbjct: 79  LIIFSVIMIFLAITMIDFDTMTIPNGLIIALV----VPAVLMTILHPEITL-LERGIGFF 133

Query: 70  IICFCFFAFNIM-----GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           I+    +   +M     GGGD+KLL  +    GW    L     V   G   S  ++T +
Sbjct: 134 IVSLPMYLLTLMIPDCFGGGDIKLLAVSGFMIGWKGILLGAFIGVLTCGCYASWLLITKK 193

Query: 125 MITNHIPIFG 134
                   FG
Sbjct: 194 TQKGAHIAFG 203


>gi|262404738|ref|ZP_06081293.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           sp. RC586]
 gi|262349770|gb|EEY98908.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           sp. RC586]
          Length = 291

 Score = 43.0 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
           VF+   L   + L+ A   DL + ++P+++++ +L   +  A L    +      +  + 
Sbjct: 128 VFTVALLFFSYVLIAATFIDLDTMLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW       +   +++G I  +  
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QLLPVIVLLSSVVGVIFGLIQ 246

Query: 121 L 121
           L
Sbjct: 247 L 247


>gi|319789518|ref|YP_004151151.1| Prepilin peptidase [Thermovibrio ammonificans HB-1]
 gi|317114020|gb|ADU96510.1| Prepilin peptidase [Thermovibrio ammonificans HB-1]
          Length = 255

 Score = 43.0 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 23  ALSDLFSAMIPNRVS--IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII--CFCFFAF 78
           A  DL +  +P ++S   ++ G FL     +     ++      G+I+FII   + F   
Sbjct: 113 AFIDLDTMEVPVKLSYFALLAGLFLSIPASIKFVDSMLGASFGAGVILFIIETYYVFTGK 172

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             MG GD  ++     + GW    L+ LFF ++ G +L V ++ +R  +   P+ 
Sbjct: 173 EGMGYGDANIMAVIGAFLGWKKVLLT-LFFASLTGAVLGVTLMALRKSSKEQPLP 226


>gi|83954504|ref|ZP_00963215.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1]
 gi|83840788|gb|EAP79959.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1]
          Length = 164

 Score = 43.0 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 5/135 (3%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
            +   +DL    I N   I +   F+L   +  + ++    HLL  +I  ++     A  
Sbjct: 20  AYTIYTDLAFMRITNVTVIALAAVFVLIGPIA-LPFDSYLWHLLAMVIALVVGIFMNAGG 78

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
           +MG GD K + +         +     F +A+    L    +  R               
Sbjct: 79  LMGAGDAKFIAAA----TPFIALGDVRFVMALFMATLVAAYIIHRAAKYSPLRKLAPQWV 134

Query: 140 SFLMKNKIPYGIAIS 154
           S+    K P G+A+ 
Sbjct: 135 SWHEAKKFPMGLALG 149


>gi|134281870|ref|ZP_01768577.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305]
 gi|134246932|gb|EBA47019.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305]
          Length = 179

 Score = 43.0 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 16/161 (9%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L      V AA  DL S  IPNR+  + L   L+    L   +   A  L        + 
Sbjct: 12  LCVTLLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAGLL 71

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI------ 126
             F+    M  GDVKL+ +   W G T   L       ++GG  ++ ++  R        
Sbjct: 72  LPFYLVRGMAAGDVKLMLAIGAWVGPT-LALHIALATFVVGGAWALAVVARRGRFRKLLA 130

Query: 127 ---------TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
                                        +PYG+AI++G L
Sbjct: 131 NLRHLFAGAALPRVASAARAAPEIDSVGMLPYGVAIAIGTL 171


>gi|149181788|ref|ZP_01860279.1| leader peptide processing enzyme [Bacillus sp. SG-1]
 gi|148850529|gb|EDL64688.1| leader peptide processing enzyme [Bacillus sp. SG-1]
          Length = 204

 Score = 43.0 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 16/138 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           +SD+   +IP++V +   G FLL   L+ +     +L         ++     +   MGG
Sbjct: 66  VSDIKYMIIPDKVLLFFSGLFLLERILIPLGSRWDSLAGAALGFGLLLLIAVISKGGMGG 125

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KL        G  P  LSF     + G ++ +  L                   F  
Sbjct: 126 GDIKLYALIGFVLGVKPMLLSFFLAT-LFGAVIGIIGLA---------------AGFFER 169

Query: 144 KNKIPYGIAISMGGLISY 161
           K  IP+G  I++G LISY
Sbjct: 170 KKPIPFGPFIAVGTLISY 187


>gi|28199789|ref|NP_780103.1| pre-pilin leader peptidase [Xylella fastidiosa Temecula1]
 gi|71275173|ref|ZP_00651460.1| Prepilin peptidase [Xylella fastidiosa Dixon]
 gi|71898254|ref|ZP_00680428.1| Prepilin peptidase [Xylella fastidiosa Ann-1]
 gi|71899810|ref|ZP_00681960.1| Prepilin peptidase [Xylella fastidiosa Ann-1]
 gi|170731164|ref|YP_001776597.1| prepilin peptidase [Xylella fastidiosa M12]
 gi|182682541|ref|YP_001830701.1| peptidase A24A domain-containing protein [Xylella fastidiosa M23]
 gi|28057910|gb|AAO29752.1| pre-pilin leader peptidase [Xylella fastidiosa Temecula1]
 gi|71163982|gb|EAO13697.1| Prepilin peptidase [Xylella fastidiosa Dixon]
 gi|71730401|gb|EAO32482.1| Prepilin peptidase [Xylella fastidiosa Ann-1]
 gi|71731993|gb|EAO34050.1| Prepilin peptidase [Xylella fastidiosa Ann-1]
 gi|167965957|gb|ACA12967.1| Prepilin peptidase [Xylella fastidiosa M12]
 gi|182632651|gb|ACB93427.1| peptidase A24A domain protein [Xylella fastidiosa M23]
 gi|307578819|gb|ADN62788.1| peptidase A24A domain-containing protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 287

 Score = 43.0 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           ++    LV  A  DL + ++P++++++++    + +A  L M  +   L   VG +   I
Sbjct: 133 IVFSCFLVALAGIDLRTRLLPDQLTLMLMWLGLIGSADNLFMAAKPALLGAAVGYLSLWI 192

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
               F        MG GD K+L +   W G     L  +   ++ G +L    L VR   
Sbjct: 193 VAALFKLIFNKEGMGHGDFKMLGALGAWCGL-KGILPIILISSLAGVVLGSVWLVVRGHN 251

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                              IP+G  +++GG I +
Sbjct: 252 RTTM---------------IPFGPYLAVGGWIVF 270


>gi|126733581|ref|ZP_01749328.1| hypothetical protein RCCS2_05479 [Roseobacter sp. CCS2]
 gi|126716447|gb|EBA13311.1| hypothetical protein RCCS2_05479 [Roseobacter sp. CCS2]
          Length = 163

 Score = 43.0 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 1/129 (0%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
           +F + +D+    I N+  IV++  + +        + +     L   I  ++C   +A  
Sbjct: 20  LFISWNDMRDMKITNKSVIVVMVVYGVLGPFA-FGWGMYFWQWLHFPIALVVCMALWALR 78

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
            MGGGD KL+ + A +F           F A L   L V  L                  
Sbjct: 79  FMGGGDAKLIAAMAPFFVMADIEFILRIFAASLIAALIVHTLFRLTPLKRPVSEWKSWNA 138

Query: 140 SFLMKNKIP 148
            +      P
Sbjct: 139 GWYFPKGFP 147


>gi|308094550|ref|ZP_05889873.2| peptidase, A24 family [Vibrio parahaemolyticus AN-5034]
 gi|308095453|ref|ZP_05906037.2| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
           parahaemolyticus Peru-466]
 gi|308125908|ref|ZP_05777990.2| peptidase, A24 family [Vibrio parahaemolyticus K5030]
 gi|308126437|ref|ZP_05910138.2| peptidase, A24 family [Vibrio parahaemolyticus AQ4037]
 gi|308087111|gb|EFO36806.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
           parahaemolyticus Peru-466]
 gi|308090937|gb|EFO40632.1| peptidase, A24 family [Vibrio parahaemolyticus AN-5034]
 gi|308108959|gb|EFO46499.1| peptidase, A24 family [Vibrio parahaemolyticus AQ4037]
 gi|308114377|gb|EFO51917.1| peptidase, A24 family [Vibrio parahaemolyticus K5030]
          Length = 119

 Score = 43.0 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 41  LGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTP 100
           L    +T+ L           L V   VFI  F  +  NI+GGGDVKL+    +      
Sbjct: 6   LLIIFITSLLSLFFTPEPLTQLAVSTSVFICFFILWLINIVGGGDVKLIGVLFLGVN-DE 64

Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
             L+ +  + +LGGI  + +  + +     P            +N IPY I I + GL  
Sbjct: 65  YMLAAIVAIGLLGGIQILVMWLMSVYRKKTPF-----------ENGIPYTIPIGISGLFF 113

Query: 161 Y 161
           +
Sbjct: 114 F 114


>gi|89074158|ref|ZP_01160657.1| putative leader peptidase PilD [Photobacterium sp. SKA34]
 gi|89050094|gb|EAR55620.1| putative leader peptidase PilD [Photobacterium sp. SKA34]
          Length = 289

 Score = 43.0 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 56/131 (42%), Gaps = 9/131 (6%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           +   +   F L+     D+   ++P+++++ ++ + +L + +      L    +      
Sbjct: 130 AIAVIFFTFALIALTFIDIDKMLLPDQITLPLMWAGILLSIMGISPVSLTDSVIGAIAGY 189

Query: 69  FIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSF-LFFVAILGGILSVFIL 121
             +   F+AF +      MG GD KLL +   W GW    L F +   +++G +  + +L
Sbjct: 190 LSLWSVFWAFKLLTKKDGMGYGDFKLLAALGAWLGW--QLLPFVVLLSSLVGALCGIVLL 247

Query: 122 TVRMITNHIPI 132
            ++   N  P 
Sbjct: 248 KMQDTDNQTPF 258


>gi|238897550|ref|YP_002923229.1| type IV prepilin peptidase family protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465307|gb|ACQ67081.1| type IV prepilin peptidase family protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 68

 Score = 43.0 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 15/80 (18%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
           MGGGD+KL+T+  +        L+F+F+ +I                  + + GM +  S
Sbjct: 1   MGGGDIKLITALILGLNHL-QILNFIFYTSIC--------------GLLVLLLGMLISFS 45

Query: 141 FLMKNKIPYGIAISMGGLIS 160
            + K  IPYG+AI++G L+S
Sbjct: 46  DIKKRGIPYGVAIALGFLLS 65


>gi|157693208|ref|YP_001487670.1| A24 unassigned peptidase family protein [Bacillus pumilus SAFR-032]
 gi|157681966|gb|ABV63110.1| possible A24 family unassigned peptidase [Bacillus pumilus
           SAFR-032]
          Length = 239

 Score = 43.0 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 1/111 (0%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
                 +I     V A +SDL    +PN + +     F +   L  +         L+  
Sbjct: 95  FEGLFLMILCSLFVIAVVSDLLYMRVPNELFLFFFPLFAIYRTLEPLLIWWEGTASLIFC 154

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
           I+      +F  N MGG D+K+ +  A  FG+ P  L  LF   I G + +
Sbjct: 155 ILLFSSLDYFKPNSMGGADMKMFSVLAFCFGFKPFLL-MLFLSCITGMVYA 204


>gi|73542326|ref|YP_296846.1| peptidase A24A, prepilin type IV [Ralstonia eutropha JMP134]
 gi|72119739|gb|AAZ62002.1| Peptidase A24A, prepilin type IV [Ralstonia eutropha JMP134]
          Length = 190

 Score = 43.0 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 55/159 (34%), Gaps = 15/159 (9%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             +  AA  DL    IPN +++    + L     +          L   +   II   F+
Sbjct: 29  AIVSTAAAIDLDRRRIPNWLTLGSWIAALPMQVAIHGIAAGSLAWLYGWIAGLIIFLPFY 88

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
               M  GDVKL+ +   W G +    S      ++GG  ++ +L V   T         
Sbjct: 89  LLRGMAAGDVKLMAAVGAWLGAS-MVPSIAVATWLIGGAWALAMLLVTGQTGATLSRVGN 147

Query: 137 VPKSFLMKNK--------------IPYGIAISMGGLISY 161
           +  S  +                 IPYG+AI+ G L   
Sbjct: 148 MLLSAAIHRGHGLAKSGSKSSAGSIPYGVAIAGGTLAML 186


>gi|121729938|ref|ZP_01682360.1| leader peptidase PilD [Vibrio cholerae V52]
 gi|121628326|gb|EAX60833.1| leader peptidase PilD [Vibrio cholerae V52]
          Length = 291

 Score = 43.0 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
           VF    L   + L+ A   D  + ++P+++++ +L   +  A L    +      +  + 
Sbjct: 128 VFGVALLFFSYVLIAATFIDFDTMLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW    +  +   +++G I  +  
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246

Query: 121 L 121
           L
Sbjct: 247 L 247


>gi|217978826|ref|YP_002362973.1| peptidase A24A prepilin type IV [Methylocella silvestris BL2]
 gi|217504202|gb|ACK51611.1| peptidase A24A prepilin type IV [Methylocella silvestris BL2]
          Length = 179

 Score = 43.0 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             LV +A+ D+   +IPN   +V+    +     L        + LLV     +      
Sbjct: 16  IVLVASAIRDVKDRIIPNEYVVVIAVIGVAQCVALRPGLA--WVSLLVAAGTLLGLGVLA 73

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            +N++GGGDVKL+++  +      + +  L  +A+ GG+LS   L   
Sbjct: 74  HWNLIGGGDVKLISAVTLLVPPNQAPV-LLIGIALAGGVLSCIYLAAH 120


>gi|313901014|ref|ZP_07834502.1| bacterial peptidase A24, N-terminal domain protein [Clostridium sp.
           HGF2]
 gi|312953972|gb|EFR35652.1| bacterial peptidase A24, N-terminal domain protein [Clostridium sp.
           HGF2]
          Length = 255

 Score = 43.0 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           +VF+   ++    ++     D  +  IPN + I ++   +       +  E   +   +G
Sbjct: 105 LVFAVFMILFTITMI-----DFDTMTIPNGLIISLI---VPVGIFTVLHPETALMTRAIG 156

Query: 66  LIVFIICFCFFAF---NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
             +  +          +  GGGD+KL+       GW  + L+F   V ++GG  +V++L 
Sbjct: 157 FFIVSLPMYLLTLLIPDCFGGGDIKLIAVAGFLLGWKLTLLAFFISV-LIGGSYAVYLLL 215

Query: 123 VRM 125
            R 
Sbjct: 216 SRK 218


>gi|169831129|ref|YP_001717111.1| peptidase A24A domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637973|gb|ACA59479.1| peptidase A24A domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 254

 Score = 43.0 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 1/117 (0%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L+ A L DL   +IP+RV +  L   L    L      L      +G  +F++     
Sbjct: 111 AVLLIATLIDLRHGIIPDRVVLAGLVLGLPLVALQSWAALLWGAAAFLGAGLFMLAIAVI 170

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
           +   MGGGD+KL     ++ G        LF   + GG ++V +L         P+ 
Sbjct: 171 SRGGMGGGDIKLAALMGLYLGPA-GVALALFLAFLAGGTVAVLLLATGRKGRKDPVP 226


>gi|152974831|ref|YP_001374348.1| peptidase A24A domain-containing protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023583|gb|ABS21353.1| peptidase A24A domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 240

 Score = 43.0 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            LV   L+DLF  MIPN V +     FL+   +    +      +L G I+F + +    
Sbjct: 107 LLVMITLTDLFYMMIPNAVLLSFSCIFLIEYMIS--PFIFWLDSVLGGGIIFCVLYILRM 164

Query: 78  F--NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
              N +GGGDVKLL+      G     ++           L +  L  RM       FG 
Sbjct: 165 IYPNGLGGGDVKLLSLLGFVLGIKGILITLCIASCSSLCFLGICFLFKRMNIRDPLPFGP 224

Query: 136 FVP 138
           F+ 
Sbjct: 225 FIA 227


>gi|160893703|ref|ZP_02074487.1| hypothetical protein CLOL250_01257 [Clostridium sp. L2-50]
 gi|156864688|gb|EDO58119.1| hypothetical protein CLOL250_01257 [Clostridium sp. L2-50]
          Length = 144

 Score = 42.6 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 22  AALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80
           AAL D+ +  IPN + ++ +     +T +  G+    I + L    I   I +  F    
Sbjct: 8   AALYDIRTWKIPNWLILLGLETGIFITVWQNGVRIGSIRV-LAGIWIPIGILYVMFLAGW 66

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +G GD+KL ++   + G+       L +  I GGILS+F + 
Sbjct: 67  LGAGDIKLFSAVGAFCGF--MIWKILLYAFIAGGILSLFYVI 106


>gi|118579418|ref|YP_900668.1| prepilin peptidase [Pelobacter propionicus DSM 2379]
 gi|118502128|gb|ABK98610.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Pelobacter propionicus DSM 2379]
          Length = 261

 Score = 42.6 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 21/160 (13%)

Query: 5   KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLL 63
             +  AV  +    LV     DL   +IP+ +S+  ++  F+ + FL G  +    L +L
Sbjct: 98  PTLAFAVLFLFCSALVVITFIDLEHQIIPDEISLPGIVLGFIFSFFLRGHGWLNSLLGIL 157

Query: 64  VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
           +G    ++    +        MGGGD+KLL     + GW  S    +F  ++ G ++ V 
Sbjct: 158 LGGGSLLLVAYGYQLVTGKEGMGGGDIKLLAMMGAFLGW-KSIPFIIFVSSLAGSVIGVS 216

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
           ++ ++   + +                IP+G  +++G L+
Sbjct: 217 LMLIQKKDSKLA---------------IPFGPYLALGALL 241


>gi|254466366|ref|ZP_05079777.1| peptidase A24A, prepilin type IV [Rhodobacterales bacterium Y4I]
 gi|206687274|gb|EDZ47756.1| peptidase A24A, prepilin type IV [Rhodobacterales bacterium Y4I]
          Length = 165

 Score = 42.6 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 1/104 (0%)

Query: 8   FSAVFLIPPFCLVF-AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +  FL     L +  AL+DL    IPN    V+   ++    +    +     HLL   
Sbjct: 7   AALWFLPFVLPLCYTVALTDLRGMRIPNWAVDVLAVIYVAVGAIAMPSWADYGWHLLHLP 66

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
               + F F++   +G GD K   + A +F      L  + F A
Sbjct: 67  AGIGLGFLFYSAGAVGAGDAKFAGAAAPFFALGDLRLLMIIFAA 110


>gi|330811040|ref|YP_004355502.1| membrane protein [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379148|gb|AEA70498.1| Hypothetical protein; putative membrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 176

 Score = 42.6 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 11/143 (7%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           SDL    IPN + ++ L   L +          +   LL  LI F +    +A   M  G
Sbjct: 22  SDLLRHRIPNTLVLLGLALGLASQIYTD-GIGGLGDSLLGMLICFALFLPMYAVGGMAAG 80

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL-- 142
           DVKL+T    +  +  +  + LF + I GG+    I+  R              ++    
Sbjct: 81  DVKLMTMVGSFLPFHYALWAALFSL-IAGGVCGFLIVLARGQLLQTLQRYWLSVRAQAYL 139

Query: 143 -------MKNKIPYGIAISMGGL 158
                       PY IAI +G L
Sbjct: 140 APGSDEVAGKPFPYSIAILIGTL 162


>gi|90580240|ref|ZP_01236047.1| putative leader peptidase PilD [Vibrio angustum S14]
 gi|90438542|gb|EAS63726.1| putative leader peptidase PilD [Vibrio angustum S14]
          Length = 289

 Score = 42.6 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66
           +   +   F L+     D+   ++P+++++ ++   +L +   +  +      +  + G 
Sbjct: 130 AIAVIFFTFALIALTFIDIDKMLLPDQITLPLMWVGILLSVMGISPVSLTDSVIGTMAGY 189

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSF-LFFVAILGGILSVFIL 121
           +     F  F      + MG GD KLL +   W GW    L F +   +++G +  + +L
Sbjct: 190 LSLWSVFWIFKLLTKKDGMGYGDFKLLAALGAWLGW--QLLPFVVLLSSLVGAVCGIVLL 247

Query: 122 TVRMITNHIPI 132
            ++   N  P 
Sbjct: 248 KMQDADNQTPF 258


>gi|157961831|ref|YP_001501865.1| peptidase A24A prepilin type IV [Shewanella pealeana ATCC 700345]
 gi|157846831|gb|ABV87330.1| peptidase A24A prepilin type IV [Shewanella pealeana ATCC 700345]
          Length = 188

 Score = 42.6 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 14/158 (8%)

Query: 20  VFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           V A   DL    IPN + +  +   FL+ ++   +    + L  +   + FII F  F F
Sbjct: 18  VLAITFDLVREKIPNWLCLIAIFCGFLINSYFAQL--NGLMLSFIGFSLAFIILFPTFMF 75

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSF-----------LFFVAILGGILSVFILTVRMIT 127
            I+G GD+KL+       G      S            L  V    G+   F    R   
Sbjct: 76  KILGAGDIKLMMGIGALIGPQLLVWSIAYAIIAGAITSLLLVIWKSGLSGCFKTVRRYWD 135

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165
                      +      ++PY  A+++G L +   + 
Sbjct: 136 CFYLRTYFKPEEGEAAGQRVPYAPALAIGWLWACSLNP 173


>gi|326318391|ref|YP_004236063.1| prepilin peptidase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375227|gb|ADX47496.1| Prepilin peptidase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 295

 Score = 42.2 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 22/148 (14%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           LV  A  D  + ++P+ +++ +L   LL +        L A           +   ++AF
Sbjct: 146 LVALACIDWDTTLLPDDITLPLLWGGLLASAFQWTSVPLFASVAGAAAGYLSLWAVYWAF 205

Query: 79  NI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
            +      MG GD KL  +   WFGW  + +  +   +++G ++ +              
Sbjct: 206 KLATGKEGMGHGDFKLFAALGAWFGW-QALVPIILMSSVIGALIGI-------------- 250

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
            GM   +       IP+G  ++  GL +
Sbjct: 251 -GMKFTRGLREGGYIPFGPFLAGAGLAA 277


>gi|323486359|ref|ZP_08091684.1| prepilin peptidase [Clostridium symbiosum WAL-14163]
 gi|323400341|gb|EGA92714.1| prepilin peptidase [Clostridium symbiosum WAL-14163]
          Length = 252

 Score = 42.2 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           + I    L+  ++ D  +  IP   +IV+  + L+  +    D+    + L+    + ++
Sbjct: 107 YAIAASSLLVLSVIDWRTFEIPVGCNIVIGTAGLVNLWFNRQDWLTYMIGLICVSGLLLL 166

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
                    MGGGDVKL+ +  +  GW    L+F     ILG ++ + ++ ++     + 
Sbjct: 167 ILLLSKGRAMGGGDVKLMAAAGLLLGWQNVILAFACGC-ILGSVIHLVLMKIQGKERMLA 225

Query: 132 IFGMFVPKSF 141
                    +
Sbjct: 226 FGPYLSAGIW 235


>gi|254245569|ref|ZP_04938890.1| Peptidase A24A [Burkholderia cenocepacia PC184]
 gi|124870345|gb|EAY62061.1| Peptidase A24A [Burkholderia cenocepacia PC184]
          Length = 167

 Score = 42.2 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 2/137 (1%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +         +SD+    I N + +  L   L  A +    + +     +VG++V +I  
Sbjct: 10  VFLTWAALVVVSDIRFRRISNVLVVAGLIGGLGAACVAASPFGISVHQAVVGMLVGLIGL 69

Query: 74  C-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
             FF   +MG  DVK+     +W G   + L      ++  G+ ++ ++ +   +     
Sbjct: 70  IPFFLLRVMGAADVKIFAVLGIWCG-AHALLWLWVAASLAAGLHALAVMLLSRTSLGGLW 128

Query: 133 FGMFVPKSFLMKNKIPY 149
                          PY
Sbjct: 129 RRREPALILGRYRATPY 145


>gi|91788408|ref|YP_549360.1| peptidase A24A, prepilin type IV [Polaromonas sp. JS666]
 gi|91697633|gb|ABE44462.1| peptidase A24A, prepilin type IV [Polaromonas sp. JS666]
          Length = 192

 Score = 42.2 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 22/151 (14%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGM--DYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           DL S  IPN + ++ L + L    +      ++   L LLVG  VF+     +    MG 
Sbjct: 32  DLKSRRIPNWLVLMGLITSLALQIIFSGIGGFKAWGLGLLVGFGVFLP---LYLLRAMGA 88

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI----------------LTVRMIT 127
           GDVKL+     + G   S L  +    ++GG L++ +                     + 
Sbjct: 89  GDVKLMAMVGAFLGPV-SALGAVLTTLVVGGALAIAVALRCGILKNTLKNIRFALTLALY 147

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
             +   GM + +       +PY +AI++G L
Sbjct: 148 KGLSGGGMQLEQPSTSAGNLPYAVAIAVGTL 178


>gi|84687269|ref|ZP_01015149.1| hypothetical protein 1099457000225_RB2654_21338 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664702|gb|EAQ11186.1| hypothetical protein RB2654_21338 [Rhodobacterales bacterium
           HTCC2654]
          Length = 171

 Score = 42.2 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 52/157 (33%), Gaps = 4/157 (2%)

Query: 3   ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG----MDYELI 58
           +  ++            V+ A+SD+    IPN+  + + G + +          +     
Sbjct: 5   QPALLGLMFLPFAAVISVWVAISDMSRMKIPNKAVMALFGVYAVVGLAAVAMSVITLPDY 64

Query: 59  ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
               +   ++ ++ F   A  ++G GD K   + A +       +    F A + G   +
Sbjct: 65  LWRYVHLAVILLVGFVMNAAGLLGAGDAKFAAAMAPFVALGDLSVFAFIFAAAILGGFVL 124

Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
             +  R+      + G    +       +  GI +  
Sbjct: 125 HRIAKRVSFVRAAVPGWESWERDDFPMGLCLGIGLVA 161


>gi|308068039|ref|YP_003869644.1| type II secretory pathway, prepilin signal peptidase PulO
           [Paenibacillus polymyxa E681]
 gi|305857318|gb|ADM69106.1| Type II secretory pathway, prepilin signal peptidase PulO
           [Paenibacillus polymyxa E681]
          Length = 170

 Score = 42.2 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 1/135 (0%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           +++    L  A ++DL S  IPN++++  +   L+   L G  ++     +      F  
Sbjct: 5   YIVCGVLLAIALVTDLRSMKIPNKLTLPGIVVGLVFNTLFG-GWDGFLFAVAGLGTGFGF 63

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
               +    +G GDVKL      W G   ++ S L+ +   G I    +L  R     + 
Sbjct: 64  MLILYWMGAVGAGDVKLFGLIGAWTGAAFAWQSALYSIFFAGIIGIGILLWKRETIMRLR 123

Query: 132 IFGMFVPKSFLMKNK 146
                +   FL ++ 
Sbjct: 124 RVAFNLGGFFLFRSG 138


>gi|78066128|ref|YP_368897.1| peptidase A24A, prepilin type IV [Burkholderia sp. 383]
 gi|77966873|gb|ABB08253.1| Peptidase A24A, prepilin type IV [Burkholderia sp. 383]
          Length = 164

 Score = 42.2 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 10/141 (7%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LL 63
           M+      +     V  AL D+    IPN + I   G F+    + G +   I+++  L+
Sbjct: 1   MILLTGVGVFLAWAVLVALEDIRHRRIPNSLVI---GGFVSAFLVSGHNPFGISVNQALI 57

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
             LI     F FF   +MG  DVK+      W G       ++        +L++  +  
Sbjct: 58  GALIGLASLFPFFVLRVMGAADVKVFAVLGAWCGPQALLWLWIMAS-----LLALAHVGT 112

Query: 124 RMITNHIPIFGMFVPKSFLMK 144
            +     P+  ++  +S  M+
Sbjct: 113 LVFATRTPVLALWQRRSPTME 133


>gi|229521255|ref|ZP_04410675.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae TM 11079-80]
 gi|229341787|gb|EEO06789.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae TM 11079-80]
          Length = 291

 Score = 42.2 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
           VF+   L   + L+ A   D  + ++P+++++ +L   +  A L    +      +  +V
Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMV 187

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW    +  +   +++G I  +  
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246

Query: 121 L 121
           L
Sbjct: 247 L 247


>gi|116748928|ref|YP_845615.1| peptidase A24A, prepilin type IV [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697992|gb|ABK17180.1| peptidase A24A, prepilin type IV [Syntrophobacter fumaroxidans
           MPOB]
          Length = 187

 Score = 42.2 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 19/162 (11%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           +    L+  A+ D+    I N  +  ++       A   G++  + +L  L   IVF+I 
Sbjct: 12  LLCVVLIVVAVEDMRKHRIRNVYTFPMVAVGLSFHALSGGLEGLVFSLKGLGLGIVFLIF 71

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              +   IMG GDVKL+ +     G    F +FL    + GG+L+V ++ +        +
Sbjct: 72  --PYLLGIMGAGDVKLMGAVGSILGSRGVFAAFLL-TCVAGGVLAVILMVLNSKHTMKRL 128

Query: 133 FGMFV---------------PKSFLMKNKIPYGIAISMGGLI 159
              +                P   L +  + YG AI+ G + 
Sbjct: 129 SAAWAAARRLPAEGRASGVPPGGDLKRPGLAYGAAIATGTIA 170


>gi|311031471|ref|ZP_07709561.1| peptidase A24A domain protein [Bacillus sp. m3-13]
          Length = 180

 Score = 42.2 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 20/149 (13%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF- 73
               L+   +SDL   +IPN++ +  LG F++  F   + ++ I  HL+   + F+I   
Sbjct: 35  FISMLIIIVISDLHYMIIPNKILLFFLGLFIIERFF--IPFQTIPDHLIGMAVGFLIPLL 92

Query: 74  -CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
               +   MGGGDVKL        GW    L+F    +++G I ++  + +  +   +P 
Sbjct: 93  VAVISKGGMGGGDVKLFAVLGFVLGWELVILTFFL-SSLIGMIAALIGMLLGKVKRGVPF 151

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                          P+G +I++  LI+Y
Sbjct: 152 ---------------PFGPSIALAALITY 165


>gi|229527032|ref|ZP_04416427.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae 12129(1)]
 gi|229335429|gb|EEO00911.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae 12129(1)]
          Length = 291

 Score = 42.2 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
           VF+   L   + L+ A   D  + ++P+++++ +L   +  A L    +      +  + 
Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW    +  +   +++G I  +  
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246

Query: 121 L 121
           L
Sbjct: 247 L 247


>gi|192361521|ref|YP_001983191.1| type IV pilus prepilin peptidase PilD [Cellvibrio japonicus
           Ueda107]
 gi|190687686|gb|ACE85364.1| type IV pilus prepilin peptidase PilD [Cellvibrio japonicus
           Ueda107]
          Length = 308

 Score = 42.2 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 66/154 (42%), Gaps = 21/154 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+   + DL + ++P+ +++ +L    ++ +F L  D        + G +    
Sbjct: 154 LVLTWALIALTMIDLDTYLLPDDITLPLLWLGLIVNSFGLFTDLASAFWGAVAGYLTLWS 213

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W GW       +   +++G ++ + ++ VR   
Sbjct: 214 VYQLFKLLTGKEGMGYGDFKLLAALGAWMGW-QMLPQIILLSSLVGAVIGITLIIVRGRD 272

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            +IP               IP+G  +++ G I++
Sbjct: 273 RNIP---------------IPFGPYLAIAGWIAF 291


>gi|11498541|ref|NP_069769.1| hypothetical protein AF0936 [Archaeoglobus fulgidus DSM 4304]
 gi|2649660|gb|AAB90302.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 240

 Score = 42.2 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 4/104 (3%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHLLV 64
           M+  A FL+    L++A   DL S ++PNRV   ++L S  +T + L +   LI  +++ 
Sbjct: 1   MLDLAKFLVVLGFLLYACKLDLESRIVPNRVWKRMLLVSLPITVYQLFLGKHLIFEYMIA 60

Query: 65  G---LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
           G   ++V  + +  +     GG D K + + AV F + P+F  F
Sbjct: 61  GIFVVMVIALSYALYLIGAYGGADAKAIMALAVIFPFYPTFNGF 104


>gi|281417259|ref|ZP_06248279.1| peptidase A24A prepilin type IV [Clostridium thermocellum JW20]
 gi|281408661|gb|EFB38919.1| peptidase A24A prepilin type IV [Clostridium thermocellum JW20]
          Length = 175

 Score = 42.2 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             ++ A +SD+    I N+++   +   ++T  +L      +   LL  ++ F++    +
Sbjct: 10  VLVLIALVSDIRHYKIRNKLTFSFMFIGIVTNLVLD-GVRGLLDSLLGIIVPFLLLIVLY 68

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           A  ++G GDVKL ++     G   +    + +  + GG++++ IL +  
Sbjct: 69  ALRMLGAGDVKLFSAIGAVLGVRAALW-IMAYSFLAGGVIALIILIINR 116


>gi|297581050|ref|ZP_06942975.1| type IV-A prepilin peptidase PilD [Vibrio cholerae RC385]
 gi|297534876|gb|EFH73712.1| type IV-A prepilin peptidase PilD [Vibrio cholerae RC385]
          Length = 291

 Score = 42.2 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
           VF+   L   + L+ A   D  + ++P+++++ +L   +  A L    +      +  + 
Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW    +  +   +++G I  +  
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246

Query: 121 L 121
           L
Sbjct: 247 L 247


>gi|126640409|ref|YP_001083393.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Acinetobacter baumannii ATCC 17978]
          Length = 247

 Score = 42.2 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+R ++ +      +  F +           L+G +   I
Sbjct: 99  LVLTWVLIALTFIDFDTQLLPDRFTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 158

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   ++LG I+ + +L +R   
Sbjct: 159 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 217

Query: 128 NHIPIFGMFVPKSF 141
                        +
Sbjct: 218 QPFAFGPYIAIAGW 231


>gi|119899525|ref|YP_934738.1| prepilin peptidase [Azoarcus sp. BH72]
 gi|119671938|emb|CAL95852.1| prepilin peptidase [Azoarcus sp. BH72]
          Length = 283

 Score = 42.2 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVG 65
           + +   LI  + ++  A  DL + ++P+++++ +L            +      +  ++G
Sbjct: 126 LAAVGGLIFLWSMIALAFIDLDTQLLPDQITLPLLWLGLAFNLASTYVPLSAAVVGAMLG 185

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW    L+ +   +++G  + + ++
Sbjct: 186 YLSLWSVYWLFKLVTGKEGMGYGDFKLLAAIGAWLGWQVLPLT-ILLSSLVGAAVGISLI 244

Query: 122 TVRMITNHIPIF 133
                  ++PI 
Sbjct: 245 LFARHGRNVPIP 256


>gi|15642423|ref|NP_232056.1| leader peptidase PilD [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587616|ref|ZP_01677380.1| leader peptidase PilD [Vibrio cholerae 2740-80]
 gi|147675471|ref|YP_001217926.1| leader peptidase PilD [Vibrio cholerae O395]
 gi|153802797|ref|ZP_01957383.1| leader peptidase PilD [Vibrio cholerae MZO-3]
 gi|153818415|ref|ZP_01971082.1| leader peptidase PilD [Vibrio cholerae NCTC 8457]
 gi|153824114|ref|ZP_01976781.1| leader peptidase PilD [Vibrio cholerae B33]
 gi|227082547|ref|YP_002811098.1| leader peptidase PilD [Vibrio cholerae M66-2]
 gi|229507514|ref|ZP_04397019.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae BX 330286]
 gi|229512290|ref|ZP_04401769.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae B33]
 gi|229519426|ref|ZP_04408869.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae RC9]
 gi|229524411|ref|ZP_04413816.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae bv. albensis VL426]
 gi|229607020|ref|YP_002877668.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae MJ-1236]
 gi|254849549|ref|ZP_05238899.1| leader peptidase PilD [Vibrio cholerae MO10]
 gi|255746903|ref|ZP_05420848.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholera CIRS 101]
 gi|262161554|ref|ZP_06030664.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae INDRE 91/1]
 gi|262168405|ref|ZP_06036102.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae RC27]
 gi|298500216|ref|ZP_07010021.1| type IV-A prepilin peptidase PilD [Vibrio cholerae MAK 757]
 gi|3025799|gb|AAC63504.1| type 4 prepilin peptidase VcpD [Vibrio cholerae]
 gi|4455004|gb|AAD21032.1| type IV-A prepilin peptidase PilD [Vibrio cholerae]
 gi|9657001|gb|AAF95569.1| leader peptidase PilD [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548126|gb|EAX58199.1| leader peptidase PilD [Vibrio cholerae 2740-80]
 gi|124121662|gb|EAY40405.1| leader peptidase PilD [Vibrio cholerae MZO-3]
 gi|126511048|gb|EAZ73642.1| leader peptidase PilD [Vibrio cholerae NCTC 8457]
 gi|126518363|gb|EAZ75586.1| leader peptidase PilD [Vibrio cholerae B33]
 gi|146317354|gb|ABQ21893.1| leader peptidase PilD [Vibrio cholerae O395]
 gi|227010435|gb|ACP06647.1| leader peptidase PilD [Vibrio cholerae M66-2]
 gi|227014318|gb|ACP10528.1| leader peptidase PilD [Vibrio cholerae O395]
 gi|229337992|gb|EEO03009.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae bv. albensis VL426]
 gi|229344115|gb|EEO09090.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae RC9]
 gi|229352255|gb|EEO17196.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae B33]
 gi|229355019|gb|EEO19940.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae BX 330286]
 gi|229369675|gb|ACQ60098.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae MJ-1236]
 gi|254845254|gb|EET23668.1| leader peptidase PilD [Vibrio cholerae MO10]
 gi|255735305|gb|EET90705.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholera CIRS 101]
 gi|262023297|gb|EEY42001.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae RC27]
 gi|262028865|gb|EEY47519.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae INDRE 91/1]
 gi|297540909|gb|EFH76963.1| type IV-A prepilin peptidase PilD [Vibrio cholerae MAK 757]
          Length = 291

 Score = 42.2 bits (98), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
           VF+   L   + L+ A   D  + ++P+++++ +L   +  A L    +      +  + 
Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW    +  +   +++G I  +  
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246

Query: 121 L 121
           L
Sbjct: 247 L 247


>gi|120555594|ref|YP_959945.1| prepilin peptidase [Marinobacter aquaeolei VT8]
 gi|120325443|gb|ABM19758.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Marinobacter aquaeolei VT8]
          Length = 291

 Score = 42.2 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 21/154 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + LV   + D  + ++P+ +++ ++    +L  F +  D+       + G +    
Sbjct: 138 LLMVWALVALTVIDFDTQLLPDGITLPLMWLGLVLNYFGVLTDFSSAFWGAVAGYLSLWS 197

Query: 72  CFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W GW     + +   +++G I+ + ++  R   
Sbjct: 198 VYWLFKLATGKEGMGHGDFKLLAALGAWLGW-QLLPAVILLSSLVGAIVGISLMAFRKHG 256

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
             +P               IP+G  ++  GL+S 
Sbjct: 257 REVP---------------IPFGPYLAAAGLLSL 275


>gi|207724792|ref|YP_002255189.1| prepilin peptidase protein [Ralstonia solanacearum MolK2]
 gi|206590017|emb|CAQ36978.1| prepilin peptidase protein [Ralstonia solanacearum MolK2]
          Length = 154

 Score = 42.2 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 13/132 (9%)

Query: 36  VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVW 95
           + + ++     T   L  D+  + L    G I        +A   MG GDVK  T   + 
Sbjct: 10  LVLSIVLVKFGTVMALAYDWRDVWL---GGAIALAGFLPLYALGWMGAGDVKFFTVAGLL 66

Query: 96  FGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP---------KSFLMKNK 146
            GW    ++     ++L G+ ++ IL +R +    P   M +               +  
Sbjct: 67  AGW-HGLVAIWLVSSVLAGVHALAILLLRRVDASAPSAWMLMRVCPALARWDPGHAGRRG 125

Query: 147 IPYGIAISMGGL 158
           IPY   +++G L
Sbjct: 126 IPYAAYMAIGLL 137


>gi|218441560|ref|YP_002379889.1| peptidase A24A domain protein [Cyanothece sp. PCC 7424]
 gi|218174288|gb|ACK73021.1| peptidase A24A domain protein [Cyanothece sp. PCC 7424]
          Length = 270

 Score = 42.2 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 12/131 (9%)

Query: 19  LVFAALSDLFSAMIPNRVS-IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI------- 70
           L+  +L DL +  +PN ++   ++   +  A   G D   +A++L++G+I  +       
Sbjct: 114 LLALSLIDLDTMTLPNSLTESGLVLGLIFQATRSGFDGSEMAINLILGIIGAVLGLWLFD 173

Query: 71  ----ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
               +    F    MGGGD KL      W GW    L+     A+      V IL+ +M 
Sbjct: 174 IIRWVGTIIFQQEAMGGGDPKLAAMIGAWLGWKYLLLTGFLACALGAFFGIVAILSTQMG 233

Query: 127 TNHIPIFGMFV 137
             H   FG F+
Sbjct: 234 RRHPIRFGPFL 244


>gi|157375511|ref|YP_001474111.1| hypothetical protein Ssed_2374 [Shewanella sediminis HAW-EB3]
 gi|157317885|gb|ABV36983.1| hypothetical protein Ssed_2374 [Shewanella sediminis HAW-EB3]
          Length = 191

 Score = 42.2 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 16/162 (9%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
             +     + A   DL+   IPN++S++ +   F + A+   +    + +      + FI
Sbjct: 10  LTLAGVFFITAISVDLYKEKIPNKLSLLAIFCGFAINAYYAQL--AGVLMACFGFGLAFI 67

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           + F  F F I+G GD+KL+       G      S L +  + G   S+ ++T +     +
Sbjct: 68  LLFPTFIFRILGAGDIKLMMGIGALMGPD-LLFSSLVYGIVAGAGTSLILITWKAGFRGL 126

Query: 131 PIFGMFVPKSFLMKN------------KIPYGIAISMGGLIS 160
                     F ++             ++PY  A+++G L +
Sbjct: 127 FKTVKRYWDCFYLRTYFKPESDEAAGQRVPYAPALAIGWLWA 168


>gi|194288839|ref|YP_002004746.1| prepilin peptidase transmembrane protein [Cupriavidus taiwanensis
           LMG 19424]
 gi|193222674|emb|CAQ68677.1| PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis
           LMG 19424]
          Length = 177

 Score = 42.2 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 49/158 (31%), Gaps = 15/158 (9%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            +  AA  DL    IPN ++     + L     +          L   L    I   F+ 
Sbjct: 17  IVTIAAAIDLDRRRIPNWLTFGAWLAALPMQAAIHGMTTGSLAWLYGWLAGLAILLPFYL 76

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP------ 131
              M  GDVKL+ +   W G             ++GG+ ++ ++                
Sbjct: 77  LRGMAAGDVKLMAAVGAWLG-AGMVPKIALATWLIGGVWALALILFTGQARATLSRVGHM 135

Query: 132 --------IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                          ++      +PYG+AI+ G L   
Sbjct: 136 LLSMAVQHRAAPTQREARTSAGSLPYGVAIAAGTLAML 173


>gi|217969594|ref|YP_002354828.1| prepilin peptidase [Thauera sp. MZ1T]
 gi|217506921|gb|ACK53932.1| Prepilin peptidase [Thauera sp. MZ1T]
          Length = 283

 Score = 42.2 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 25/156 (16%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+  + +V     DL + ++P+ +++ +L  +L  AF LG  +  +   ++  +  ++  
Sbjct: 132 LLFVWAMVALTFIDLDTQLLPDDITLPLL--WLGLAFNLGTTFAELPDAVIGAMAGYLAL 189

Query: 73  FCFFAF-------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           +  F           MG GD KLL +   W GW    L+ +   +++G ++ + ++ V  
Sbjct: 190 WAVFWLFKLATGKEGMGYGDFKLLAAIGAWLGWQMLPLT-ILLSSLVGAVVGILLIVVAR 248

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
              ++P               IP+G  ++  GLI+ 
Sbjct: 249 HGRNVP---------------IPFGPYLAAAGLIAL 269


>gi|169634559|ref|YP_001708295.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Acinetobacter baumannii SDF]
 gi|169153351|emb|CAP02468.1| type 4 prepilin-like proteins leader peptide processing enzyme
           (Protein secretion protein XCPA)[Includes: Leader
           peptidase (Prepilin peptidase); N-methyltransferase ]
           [Acinetobacter baumannii]
          Length = 286

 Score = 42.2 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+R ++ +      +  F +           L+G +   I
Sbjct: 138 LVLTWVLIALTFIDFDTQLLPDRFTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   ++LG I+ + +L +R   
Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256

Query: 128 NHIPIFGMFVPKSF 141
                        +
Sbjct: 257 QPFAFGPYIAIAGW 270


>gi|254291778|ref|ZP_04962563.1| leader peptidase PilD [Vibrio cholerae AM-19226]
 gi|150422290|gb|EDN14252.1| leader peptidase PilD [Vibrio cholerae AM-19226]
          Length = 291

 Score = 42.2 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
           VF+   L   + L+ A   D  + ++P+++++ +L   +  A L    +      +  + 
Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW    +  +   +++G I  +  
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246

Query: 121 L 121
           L
Sbjct: 247 L 247


>gi|15839126|ref|NP_299814.1| pre-pilin leader peptidase [Xylella fastidiosa 9a5c]
 gi|9107744|gb|AAF85334.1|AE004060_9 pre-pilin leader peptidase [Xylella fastidiosa 9a5c]
          Length = 287

 Score = 42.2 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           ++    LV  A  DL + ++P++++++++    + +   L M  +   L  +VG +   I
Sbjct: 133 IVFSCFLVALAGIDLRTRLLPDQLTLMLMWLGLIGSTDNLFMAAKPALLGAVVGYLSLWI 192

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
               F        MG GD K+L +   W G     L  +   ++ G +L    L VR   
Sbjct: 193 VAALFKLIFNKEGMGHGDFKMLAALGAWCGL-KGILPIILISSLAGVVLGSVWLVVRGHN 251

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                              IP+G  +++GG I +
Sbjct: 252 RTTM---------------IPFGPYLAVGGWIVF 270


>gi|294649075|ref|ZP_06726519.1| Type 4 prepilin peptidase [Acinetobacter haemolyticus ATCC 19194]
 gi|292825036|gb|EFF83795.1| Type 4 prepilin peptidase [Acinetobacter haemolyticus ATCC 19194]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+R ++ +      + +F +           ++G +   I
Sbjct: 138 LVLTWVLITLTFIDFDTQLLPDRFTLPLAALGLAINSFAIYTTANSAIWGYVIGFLCLWI 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   +++G I+ + +L +R   
Sbjct: 198 VYYLFKIFTGKEGMGYGDFKLLAALGAWMGPMLLPL-IVLLSSVVGAIIGIILLKMRGEN 256

Query: 128 NHIPIFGMFVPKSFLM 143
                        ++ 
Sbjct: 257 QPFAFGPYIAIAGWIA 272


>gi|241667108|ref|YP_002985192.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862565|gb|ACS60230.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 187

 Score = 41.8 bits (97), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 2/115 (1%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
           C + AA+ D     IPN V+   L    + A + G     I L         +I    FA
Sbjct: 20  CTMTAAVLDHRHGHIPNAVTYPCLLGGFMLAAVSG-GLAGIGLAFAGLFAAGLIFIIAFA 78

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
               GGGDVKL+ +     G  P+ +       ++GG+++VF +  R+  + +  
Sbjct: 79  AGSCGGGDVKLMAALGAILGLWPA-IDVTLASLMVGGVIAVFSMARRVQWSVLAR 132


>gi|193076176|gb|ABO10791.2| type 4 prepilin-like proteins leader peptide processing enzyme
           [Acinetobacter baumannii ATCC 17978]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+R ++ +      +  F +           L+G +   I
Sbjct: 138 LVLTWVLIALTFIDFDTQLLPDRFTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   ++LG I+ + +L +R   
Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256

Query: 128 NHIPIFGMFVPKSF 141
                        +
Sbjct: 257 QPFAFGPYIAIAGW 270


>gi|226951822|ref|ZP_03822286.1| type 4 prepilin-like protein leader peptide processing enzyme
           [Acinetobacter sp. ATCC 27244]
 gi|226837362|gb|EEH69745.1| type 4 prepilin-like protein leader peptide processing enzyme
           [Acinetobacter sp. ATCC 27244]
          Length = 285

 Score = 41.8 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+R ++ +      + +F +           ++G +   I
Sbjct: 137 LVLTWVLITLTFIDFDTQLLPDRFTLPLAALGLAINSFAIYTTANSAIWGYVIGFLCLWI 196

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   +++G I+ + +L +R   
Sbjct: 197 VYYLFKIFTGKEGMGYGDFKLLAALGAWMGPMLLPL-IVLLSSVVGAIIGIILLKMRGEN 255

Query: 128 NHIPIFGMFVPKSFLM 143
                        ++ 
Sbjct: 256 QPFAFGPYIAIAGWIA 271


>gi|145299829|ref|YP_001142670.1| flp pilus prepilin peptidase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|88866584|gb|ABD57352.1| FlpA [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852601|gb|ABO90922.1| flp pilus prepilin peptidase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 138

 Score = 41.8 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 23/147 (15%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
               +  +SDLF   IPN   +V+    L       +   L  L LL+GL         +
Sbjct: 11  LMACWCLVSDLFERRIPNLAVLVLALWALWLLPFNPLSLTLALLTLLLGLFA-------Y 63

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV-RMITNHIPIFGM 135
                G GD KLL      +G +  +   L ++A+ GG+LS+  L   R   +  P+   
Sbjct: 64  HRGWCGAGDSKLLAVCL--YGASGRWPELLLWMALSGGVLSLVCLVYARFRPSPEPVT-- 119

Query: 136 FVPKSFLMKNKIPYGIAISMGGLISYP 162
                      +PYG AI     ++ P
Sbjct: 120 -----------VPYGFAILWAASLTTP 135


>gi|307545300|ref|YP_003897779.1| prepilin peptidase [Halomonas elongata DSM 2581]
 gi|307217324|emb|CBV42594.1| prepilin peptidase [Halomonas elongata DSM 2581]
          Length = 283

 Score = 41.8 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 10/147 (6%)

Query: 5   KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLL 63
             + +A  L     L+  A+ DL   ++P+ +++ +L    L       +      L  +
Sbjct: 123 PTLEAAFILGACLTLLALAVIDLRLQILPDILTLPLLWAGLLYHLLFQPLGLPDAVLGAM 182

Query: 64  VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
           +G +        F        MG GD KLL +   WFGW   +L  L  ++  GG L   
Sbjct: 183 LGYLALWGFHGLFQRLTGKRGMGHGDFKLLAALGAWFGWP--YLPLLLVLSAAGGALFGL 240

Query: 120 I---LTVRMITNHIPIFGMFVPKSFLM 143
           +   L  R     +P         ++M
Sbjct: 241 VAQALDPRRRGQPMPFGPWLALAGWIM 267


>gi|116255767|ref|YP_771600.1| putative transmembrane pilus assembly protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115260415|emb|CAK03519.1| putative transmembrane pilus assembly protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 187

 Score = 41.8 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 2/115 (1%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
           C + AA+ D     IPN V+   L    + A + G     I L     L   +I    FA
Sbjct: 20  CTMTAAVLDHRHGHIPNAVTYPCLLGGFMLAAVSG-GLAGIGLAFAGLLAAGLIFIIAFA 78

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
               GGGDVKL+ +     G  P+ +       + GG+++VF +  R+  + +  
Sbjct: 79  AGSCGGGDVKLMAALGAILGLWPA-IDVTLASLMAGGVIAVFSMARRVQWSVLAR 132


>gi|299771790|ref|YP_003733816.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
           [Acinetobacter sp. DR1]
 gi|298701878|gb|ADI92443.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
           [Acinetobacter sp. DR1]
          Length = 286

 Score = 41.8 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIA 59
           M     +   + L+  + L+     D  + ++P+R ++ +      +  F +        
Sbjct: 126 MMFGPTIQMLLGLVLTWVLITLTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAI 185

Query: 60  LHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115
              L+G +   I +  F        MG GD KLL +   W G     L  +   ++LG I
Sbjct: 186 WGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAI 244

Query: 116 LSVFILTVRMITNHIPIFGMFVPKSF 141
           + + +L +R                +
Sbjct: 245 IGIILLKLRNDNQPFAFGPYIAIAGW 270


>gi|53723204|ref|YP_112189.1| pilus assembly-related outer membrane protein [Burkholderia
           pseudomallei K96243]
 gi|76817950|ref|YP_336466.1| type IV prepilin peptidase-like protein [Burkholderia pseudomallei
           1710b]
 gi|126457458|ref|YP_001076986.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a]
 gi|226193972|ref|ZP_03789573.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
           Pakistan 9]
 gi|254182586|ref|ZP_04889180.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655]
 gi|254187137|ref|ZP_04893652.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur
           52237]
 gi|254192600|ref|ZP_04899039.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13]
 gi|254264336|ref|ZP_04955201.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a]
 gi|254296482|ref|ZP_04963938.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e]
 gi|52213618|emb|CAH39672.1| putative pilus assembly-related outer membrane protein
           [Burkholderia pseudomallei K96243]
 gi|76582423|gb|ABA51897.1| type IV prepilin peptidase-like protein [Burkholderia pseudomallei
           1710b]
 gi|126231226|gb|ABN94639.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a]
 gi|157806354|gb|EDO83524.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e]
 gi|157934820|gb|EDO90490.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur
           52237]
 gi|169649358|gb|EDS82051.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13]
 gi|184213121|gb|EDU10164.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655]
 gi|225933917|gb|EEH29903.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei
           Pakistan 9]
 gi|254215338|gb|EET04723.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a]
          Length = 179

 Score = 41.8 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 16/161 (9%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L      V AA  DL S  IPNR+  + L   L+    L   +   A  L        + 
Sbjct: 12  LCVTLLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAGLL 71

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP- 131
             F+    M  GDVKL+ +   W G T + L       ++GG  ++ ++  R     +  
Sbjct: 72  LPFYLVRGMAAGDVKLMLAIGAWVGPTLA-LHIALATFVVGGAWALAVVAGRGRFRKLLA 130

Query: 132 --------------IFGMFVPKSFLMKNKIPYGIAISMGGL 158
                                        +PYG+AI++G L
Sbjct: 131 NLRHLFAGAALLRVASAARAAPEIDSVGMLPYGVAIAIGTL 171


>gi|91775998|ref|YP_545754.1| peptidase A24A, prepilin type IV [Methylobacillus flagellatus KT]
 gi|91709985|gb|ABE49913.1| peptidase A24A, prepilin type IV [Methylobacillus flagellatus KT]
          Length = 164

 Score = 41.8 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 6/137 (4%)

Query: 23  ALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
           A  D     IPN +S+  L     ++  A  +    + I+       + F++    +A  
Sbjct: 13  AYYDFSQRRIPNLLSLGALIFGLGYMSVAGQVFYYGQPISSAFWGLAVSFLLTIPGYATR 72

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
            +GGGDVKLL + AV  G      +F+       G+L+  ++  ++           V +
Sbjct: 73  TLGGGDVKLLAAIAVLCGVKVVVATFVLASL---GVLAALLVWWQLSPQLSTSGWAAVSR 129

Query: 140 SFLMKNKIPYGIAISMG 156
               +  IP+G A+++ 
Sbjct: 130 ESNNRRYIPFGAALALA 146


>gi|73539228|ref|YP_299595.1| peptidase A24A, prepilin type IV [Ralstonia eutropha JMP134]
 gi|72122565|gb|AAZ64751.1| Peptidase A24A, prepilin type IV [Ralstonia eutropha JMP134]
          Length = 166

 Score = 41.8 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 15/161 (9%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           +I          +DL    +PN +   +L +  L           I+  LL   +   + 
Sbjct: 1   MIAVLFCAATLWTDLAYRRVPNALLAAVLVALSLALLTGNAPEPAISARLLGAGLGAAVT 60

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              +A   M  GDVK L    + F      ++     ++LG + +V    +         
Sbjct: 61  LPVYALGRMAAGDVKFLAVAGL-FTGPQGLVTVWVVGSLLGLVHAVLAYALDSRPLSALR 119

Query: 133 FGMFVP--------------KSFLMKNKIPYGIAISMGGLI 159
             M                 + F     IPY   ++ G L+
Sbjct: 120 QRMPAALRVHTAIRPASQSSRQFSKVRGIPYAAYLAAGMLV 160


>gi|134298911|ref|YP_001112407.1| peptidase A24A domain-containing protein [Desulfotomaculum reducens
           MI-1]
 gi|134051611|gb|ABO49582.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Desulfotomaculum reducens MI-1]
          Length = 248

 Score = 41.8 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 1/126 (0%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
            +   L+    L+   + D+   +IP+ V +V     L   F   +D+    L       
Sbjct: 97  QALAMLVFFSVLMVTTVIDIHHQIIPDSVLLVGGLLGLPIIFFQSLDHLKWGLIGFFAAG 156

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
           + ++     +   MGGGD+KL     ++ G  P  ++ LF   +LGG + + +L   +  
Sbjct: 157 LLLLLIALLSKGGMGGGDIKLAAVMGLYLGLKPVAIA-LFLSFLLGGAVGILLLATGIKG 215

Query: 128 NHIPIF 133
              P+ 
Sbjct: 216 RKDPVP 221


>gi|323695018|ref|ZP_08109164.1| prepilin peptidase [Clostridium symbiosum WAL-14673]
 gi|323500914|gb|EGB16830.1| prepilin peptidase [Clostridium symbiosum WAL-14673]
          Length = 250

 Score = 41.8 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           + I    L+  ++ D  +  IP   +IV+  + L+  +    D+    + L+    + ++
Sbjct: 105 YAIAASSLLVLSVIDWRTFEIPVGCNIVIGTAGLVNLWFNRQDWLTYMIGLICVSGLLLL 164

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
                    MGGGDVKL+ +  +  GW    L+F     ILG ++ + ++ ++     + 
Sbjct: 165 ILLLSKGRAMGGGDVKLMAAAGLLLGWQNVILAFACGC-ILGSVIHLVLMKIQGKERMLA 223

Query: 132 IFGMFVPKSF 141
                    +
Sbjct: 224 FGPYLSAGIW 233


>gi|283850944|ref|ZP_06368229.1| peptidase A24A prepilin type IV [Desulfovibrio sp. FW1012B]
 gi|283573590|gb|EFC21565.1| peptidase A24A prepilin type IV [Desulfovibrio sp. FW1012B]
          Length = 165

 Score = 41.8 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
           D+ S  IPNR++   +   +            +    L  L  F++      F ++G GD
Sbjct: 25  DMRSRRIPNRITFPAMLVLVALHGAFS-GLPGLGEAALGLLGGFLVFLIPHLFGLLGAGD 83

Query: 86  VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
           VKL+       G + + L+ + F ++ GG+     L    +       G  +        
Sbjct: 84  VKLMAVVGAGLG-SQALLTAVLFTSVAGGLQFFVWLAWLRLARPGATAGYRLC------- 135

Query: 146 KIPYGIAISMGGL 158
              YG AI+ G L
Sbjct: 136 ---YGPAIAAGAL 145


>gi|327484918|gb|AEA79325.1| Leader peptidase (Prepilin peptidase) [Vibrio cholerae LMA3894-4]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
           VF+   L   + L+ A   D  + ++P+++++ +L   +  A L    +      +  + 
Sbjct: 128 VFAVALLFFTYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW    +  +   +++G I  +  
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246

Query: 121 L 121
           L
Sbjct: 247 L 247


>gi|262190163|ref|ZP_06048445.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae CT 5369-93]
 gi|262033954|gb|EEY52412.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae CT 5369-93]
          Length = 310

 Score = 41.8 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
           VF+   L   + L+ A   D  + ++P+++++ ++   +  A L    +      +  + 
Sbjct: 147 VFAVALLFFTYVLIAATFIDFDTLLLPDQLTLPLMWGGIALALLGFSPVSLSDAVIGAMA 206

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW    +  +   +++G I  +  
Sbjct: 207 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 265

Query: 121 L 121
           L
Sbjct: 266 L 266


>gi|197334382|ref|YP_002155267.1| hypothetical protein VFMJ11_0513 [Vibrio fischeri MJ11]
 gi|197315872|gb|ACH65319.1| conserved hypothetical protein [Vibrio fischeri MJ11]
          Length = 109

 Score = 41.8 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           HLL  LI+  + F  F FNI+  GD+K   + ++        L           +  + +
Sbjct: 16  HLLSPLIILFVGFILFKFNIIAAGDIKYYAAMSLMIEQQYLLL-----------VTCIIL 64

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
               +                 ++  +PYG+AIS+G L
Sbjct: 65  CLGGLQAYCQYCIYKLTGNERWIERGVPYGVAISIGSL 102


>gi|307730009|ref|YP_003907233.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1003]
 gi|307584544|gb|ADN57942.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1003]
          Length = 173

 Score = 41.8 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 3   ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62
           +S M  S    +        A+SD  S  I N + +  L +  L A      + + A   
Sbjct: 5   KSAMQVSIALFLFMIWCACVAISDCRSRRISNGLVVTGLIAAFLCALFGICPFGISAAQA 64

Query: 63  LVGLIVFIICFC-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
             G  V +      FA  +MG  DVK+      W G   + L      ++L G+ ++++L
Sbjct: 65  AAGAAVGLAVLLPLFALGVMGAADVKVFAVLGAWCGI-HALLGLWAVASVLAGLHALWVL 123

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYG 150
                                 +   P+ 
Sbjct: 124 AAARPRIASLSGRRAPTFELAGRRATPFA 152


>gi|148253066|ref|YP_001237651.1| hypothetical protein BBta_1528 [Bradyrhizobium sp. BTAi1]
 gi|146405239|gb|ABQ33745.1| putative membrane protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 184

 Score = 41.8 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L  +A  DL   +IPN + + +    +  A  L +   L+   LLV +IVF   +   
Sbjct: 17  IVLGISAAIDLKDRVIPNELVVAIAV--IGFAQGLALRPGLVWFSLLVAIIVFFGLWIVA 74

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
              I+GGGD+KL+++  +           L  + + GG+LS F L        +P
Sbjct: 75  HVKIIGGGDLKLISAVTLLVPPD-RVGQLLIDIVLAGGLLSCFYLAAHYGLKRLP 128


>gi|77359346|ref|YP_338921.1| leader peptide processing enzyme [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874257|emb|CAI85478.1| Type 4 prepilin-like proteins leader peptide processing enzyme
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 291

 Score = 41.8 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66
            + +++   + LV     D+   ++P+++++ ++   L+ A L   +      +    G 
Sbjct: 133 QALLYIAITWALVALTFIDIDHMLLPDQITLPLVWLALIAAVLGYTVTPTDAIIGAACGY 192

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL       GW  S L+ +   +++G I+ + +LT
Sbjct: 193 LSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGW-QSLLTIILLSSVVGAIIGIALLT 251

Query: 123 VRMITNHIPIF 133
           ++      PI 
Sbjct: 252 IQGKDKATPIP 262


>gi|153214086|ref|ZP_01949220.1| leader peptidase PilD [Vibrio cholerae 1587]
 gi|124115512|gb|EAY34332.1| leader peptidase PilD [Vibrio cholerae 1587]
          Length = 291

 Score = 41.4 bits (96), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
           VF+   L   + L+ A   D  + ++P+++++ ++   +  A L    +      +  +V
Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLMWGGIALALLGFSPVSLSDAVIGAMV 187

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW    +  +   +++G I  +  
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246

Query: 121 L 121
           L
Sbjct: 247 L 247


>gi|296110011|ref|YP_003616960.1| Peptidase A24A domain protein [Methanocaldococcus infernus ME]
 gi|295434825|gb|ADG13996.1| Peptidase A24A domain protein [Methanocaldococcus infernus ME]
          Length = 331

 Score = 41.4 bits (96), Expect = 0.045,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 18/155 (11%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +    ++I  F L+ A+++D+   +IP++  I M    L       + Y       ++G+
Sbjct: 3   LLDIAYIINFFILILASITDIKEKIIPHKYVIAMFLINLP------IGYYFFGFDAIIGM 56

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAV-----WFGWTPSFLSFLFFVAILGGILSVFIL 121
           I   I     +   MGGGDVKL T+ A       F + P  + ++  +++L   +     
Sbjct: 57  ISTFILCLILSIG-MGGGDVKLFTALAPIFSYDLFYFLPKPILYMIAISMLLVAIYPLFK 115

Query: 122 TVRMITNHIPIFGMFVPKSF------LMKNKIPYG 150
             R     I     ++          + K  IPYG
Sbjct: 116 IFRRYYKEILYSSFYLATVMGILYYIIYKLNIPYG 150


>gi|160936838|ref|ZP_02084203.1| hypothetical protein CLOBOL_01727 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440219|gb|EDP17965.1| hypothetical protein CLOBOL_01727 [Clostridium bolteae ATCC
           BAA-613]
          Length = 251

 Score = 41.4 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (39%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + SA+  +    L+ AA  D     IP+ + I++L    ++         +  L   +  
Sbjct: 98  MESALMCMFSSILITAAFIDARHMYIPDGIHILILILSCISLAAGSGPAIINRLGGSLLA 157

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
             F+      +   +G GDVKL  ++ +  G  P+  + L      G   +V ++  R
Sbjct: 158 GGFLALVNLLSRGGVGWGDVKLFAASGLLIGAAPAITALLMGYVAAGLWYAVPLVRGR 215


>gi|304405037|ref|ZP_07386697.1| peptidase A24A prepilin type IV [Paenibacillus curdlanolyticus YK9]
 gi|304345916|gb|EFM11750.1| peptidase A24A prepilin type IV [Paenibacillus curdlanolyticus YK9]
          Length = 159

 Score = 41.4 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 2/110 (1%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             +V A  +D+ S  IPN ++     + LL   L       +   L+  +   +     +
Sbjct: 9   VLVVIAFATDVRSMRIPNWLTGGSFAAALLAHVLA-AGVGGLQFALVGAVAGLVPLVTMY 67

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
           A   +G GDVKL  +   W G T   +    +  +  G L V +L +R +
Sbjct: 68  AIKGVGAGDVKLFAALGAWLG-TSDIIQLFVYSILYAGALGVLMLVIRRL 116


>gi|325124300|gb|ADY83823.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 243

 Score = 41.4 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+R ++ +      +  F +           L+G +   I
Sbjct: 95  LVLTWILIALTFIDFDTQLLPDRFTLPLAALGLGINTFSIYTSPNSAIWGYLIGFLCLWI 154

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   ++LG I+ + +L +R   
Sbjct: 155 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 213

Query: 128 NHIPIFGMFVPKSF 141
                        +
Sbjct: 214 QPFAFGPYIAIAGW 227


>gi|154686942|ref|YP_001422103.1| hypothetical protein RBAM_025120 [Bacillus amyloliquefaciens FZB42]
 gi|154352793|gb|ABS74872.1| ComC [Bacillus amyloliquefaciens FZB42]
          Length = 250

 Score = 41.4 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +DL   +IP++V +  L  F+       +D         V     ++   F +   +G G
Sbjct: 112 TDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFIMFVSKGGIGAG 171

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAI 111
           DVKL     +  G     ++F   V I
Sbjct: 172 DVKLFGVIGLTLGVKLVLIAFFLSVMI 198


>gi|20808458|ref|NP_623629.1| hypothetical protein TTE2059 [Thermoanaerobacter tengcongensis MB4]
 gi|20517076|gb|AAM25233.1| hypothetical protein TTE2059 [Thermoanaerobacter tengcongensis MB4]
          Length = 143

 Score = 41.4 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLV 64
           M    + L       +AA +D     I N V   +L    +L AFL  + +    +++L 
Sbjct: 1   MHSITLSLPVVVLTAYAAWTDCKRKEIDNWVPAAILTYGIILNAFLNPVGFIESIVYMLT 60

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
              +    +       +GGGDVKLLT+ A +FG     L  +
Sbjct: 61  AFAILFTIYII-TNGQLGGGDVKLLTALAFFFGSDIMVLLLI 101


>gi|126735711|ref|ZP_01751456.1| hypothetical protein RCCS2_17586 [Roseobacter sp. CCS2]
 gi|126714898|gb|EBA11764.1| hypothetical protein RCCS2_17586 [Roseobacter sp. CCS2]
          Length = 152

 Score = 41.4 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 1/109 (0%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M    + L     LV A + ++ +  IPN +++V    F +   ++     L    + + 
Sbjct: 1   MNLEMIPLAMGAVLVVAMVLEIKTGRIPNWLTLVPFALFAVLLVMVEDRTPLY-WQMGLA 59

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
           +  FI     FA    G G VKLL  TA++  +  +F +FL F+AI  G
Sbjct: 60  VGTFIFGLVLFAIGGSGAGAVKLLAGTALFVPFENAFFTFLLFLAIFFG 108


>gi|315181063|gb|ADT87977.1| hypothetical protein vfu_A02864 [Vibrio furnissii NCTC 11218]
          Length = 162

 Score = 41.4 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 22  AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81
             + D     IPN +  +++ + ++   LL   ++L    +   L+VF++         M
Sbjct: 3   VGVYDARQHRIPNILLGLLMLAGVIQTLLLDQTFDLFVGQIGAMLMVFVLALMCHMAGWM 62

Query: 82  GGGDVKLLTSTAVWFGWTPSF--LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
             GDVKLL       G+        ++   AI  G++   +  + +    + + G+ V
Sbjct: 63  APGDVKLLAVIGFLTGFGHLADTFFYIGVSAIFIGVMYGMLNYLLLFKESVSVVGVRV 120


>gi|261856175|ref|YP_003263458.1| prepilin peptidase [Halothiobacillus neapolitanus c2]
 gi|261836644|gb|ACX96411.1| Prepilin peptidase [Halothiobacillus neapolitanus c2]
          Length = 294

 Score = 41.4 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 23/160 (14%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL---TAFLLGMDYELIALHLLVG 65
           +    +  + L+ AA+ DL + ++P+ +++ ++   LL   T F   +  E   +  + G
Sbjct: 134 AIAVWVFSWILLAAAIIDLKTTLLPDNLTLPLMWLGLLLALTGFGTTVTLENAVIGAMAG 193

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW    +  L    + G ++ + ++
Sbjct: 194 YLSLWSIYWLFKLLTGREGMGYGDFKLLAALGAWLGWQQLPMVLLLSAGV-GAVVGIGMI 252

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                   IP               IP+G  ++  GL+SY
Sbjct: 253 LFLKHDKRIP---------------IPFGPYLASAGLLSY 277


>gi|288560490|ref|YP_003423976.1| type IV leader peptidase family protein [Methanobrevibacter
           ruminantium M1]
 gi|288543200|gb|ADC47084.1| type IV leader peptidase family protein [Methanobrevibacter
           ruminantium M1]
          Length = 302

 Score = 41.4 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVM-----LGSFLLTAFLLGMDYELIALHLLVGL 66
           F++  F L+ A   DL   +IPN++S+ +     L + L+   L    Y +  +  L+  
Sbjct: 22  FIMVFFTLLLANYYDLKYGIIPNKLSVFLMTFGILINVLILIVLNNRLYAIFYVSYLI-- 79

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
           I+FII F  +  +  GGGD+KL  S      +      F
Sbjct: 80  IIFIISFVLWKISFWGGGDLKLFCSIGFSLPFIDILNHF 118


>gi|83590393|ref|YP_430402.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Moorella thermoacetica ATCC 39073]
 gi|83573307|gb|ABC19859.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Moorella thermoacetica ATCC 39073]
          Length = 247

 Score = 41.4 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           +L     LV A+  DL   +IP+ + +      +L + L        AL   V    F++
Sbjct: 99  YLFLGAVLVAASFIDLEHYLIPDSLVVTGACGGILFSLLARDVGFRAALGGSVAAAGFLL 158

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
                +   MGGGDVKL     ++ GW P     LF   + GG+  V +L   +     P
Sbjct: 159 LVAVISNGGMGGGDVKLAGMVGLFLGW-PLASLALFLSLVTGGLAGVCLLVSGLKKREDP 217

Query: 132 IF 133
           + 
Sbjct: 218 LP 219


>gi|103485821|ref|YP_615382.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256]
 gi|98975898|gb|ABF52049.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Sphingopyxis alaskensis RB2256]
          Length = 260

 Score = 41.4 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 20/148 (13%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVFIICFCFFAFN----I 80
           D     +P+R+++++  + +L A  +LG       +  LVG     +    +A       
Sbjct: 127 DARHFWLPDRLTLLLAVTGVLLAGPMLGTSLVDRWVGALVGGGTLALLAWLYARARRREG 186

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
           MGGGD KL+ +T  W GW    L     +A LGGI+               +        
Sbjct: 187 MGGGDPKLVAATGAWLGWQALPLM--LLLASLGGII-------------WALVVQRKGDQ 231

Query: 141 FLMKNKIPYGIAISMGGLISYPDSYLFK 168
            L + ++P+G+ +      + P   L  
Sbjct: 232 PLGERRVPFGMFLCGAAFAAVPLWPLIA 259


>gi|225570268|ref|ZP_03779293.1| hypothetical protein CLOHYLEM_06364 [Clostridium hylemonae DSM
           15053]
 gi|225161063|gb|EEG73682.1| hypothetical protein CLOHYLEM_06364 [Clostridium hylemonae DSM
           15053]
          Length = 230

 Score = 41.4 bits (96), Expect = 0.052,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMD-YELIALHLLVGLIVFIIC 72
               L   AL+DL    IP+     ++    ++AF L G+  +E  A  L V L   ++ 
Sbjct: 88  FFCILAAVALTDLGRREIPDMYCAAVVILAFISAFTLPGLPVWERAAGSLCVSLPFLVVA 147

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
                    GGGDVKL+ +  ++ G   + ++    + + G   +  +L+ R     +  
Sbjct: 148 VAV--PGAFGGGDVKLMAACGLFLGVKITAVAAAAGILLAGCAGAGLVLSGRRGKRGVLA 205

Query: 133 FGMFV 137
            G F+
Sbjct: 206 LGPFL 210


>gi|32473551|ref|NP_866545.1| type IV prepilin peptidase CpaA [Rhodopirellula baltica SH 1]
 gi|32398231|emb|CAD78326.1| similar to type IV prepilin peptidase CpaA [Rhodopirellula baltica
           SH 1]
 gi|327540754|gb|EGF27321.1| peptidase A24A prepilin type IV [Rhodopirellula baltica WH47]
          Length = 185

 Score = 41.4 bits (96), Expect = 0.052,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 17/164 (10%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L+ AA+ D     +PN ++   +       F+ G  +  +   LL   +  ++     
Sbjct: 19  VVLIVAAVIDGMILKVPNWLTFPFIICGWAHCFIQG-GFPELGYSLLGTFVGMMLLLPLR 77

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
               MG GDVKLL     W G   +  +F     + G + +  I        H   F   
Sbjct: 78  NVGGMGAGDVKLLAGIGAWCGTMITLKAFAATAIVGGIMAAFMIWKSGAWVKHYAQFWKI 137

Query: 137 VPKSFLMKNK----------------IPYGIAISMGGLISYPDS 164
           + +   ++                  +PYGI +++G +I +  +
Sbjct: 138 MDEWRTIRKPEQLAAIARERKPTMYLLPYGIPMAIGTIIYFAAT 181


>gi|259417425|ref|ZP_05741344.1| peptidase A24A prepilin type IV [Silicibacter sp. TrichCH4B]
 gi|259346331|gb|EEW58145.1| peptidase A24A prepilin type IV [Silicibacter sp. TrichCH4B]
          Length = 136

 Score = 41.4 bits (96), Expect = 0.052,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 4/126 (3%)

Query: 30  AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLL 89
             IPN     +   ++    L+   +      LL       I + F+A  ++G GD K  
Sbjct: 1   MRIPNWTVDTLALIYIFLGLLVMPTWADYGWQLLHLPAGIAIGYLFYASGLVGAGDAKFA 60

Query: 90  TSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
            + A +  +    L  + F A     L    L  R+  +          +S+ +  K P 
Sbjct: 61  GAAAPYVAFADLKLIIIIFAA----ALLSGFLAHRLARHTPLRRLAPDWQSWNVGVKFPM 116

Query: 150 GIAISM 155
           G+ +  
Sbjct: 117 GLCLGA 122


>gi|39997141|ref|NP_953092.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Geobacter sulfurreducens PCA]
 gi|39984031|gb|AAR35419.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Geobacter sulfurreducens PCA]
 gi|307634972|gb|ADI84877.2| type IV prepilin-like proteins leader peptide processing enzyme
           [Geobacter sulfurreducens KN400]
          Length = 259

 Score = 41.4 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 68/155 (43%), Gaps = 21/155 (13%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           A   +    LV  +  DL   +IP+ +S+  ++  F+L+ FL  + +    + +  G   
Sbjct: 103 AALFVFCSALVAISFIDLDHQIIPDVISLPGIVLGFVLSFFLPWLGWLNSLIGIAAGGGS 162

Query: 69  FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            ++    +        MGGGD+KLL     + GW  +    +F  +++G ++ + ++ ++
Sbjct: 163 LLLVAWLYERLTGKEGMGGGDIKLLAMMGAFLGWR-AVPFIIFASSLVGSVIGLTLMMLQ 221

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
              + +                IP+G  +++G L+
Sbjct: 222 KKDSKLA---------------IPFGPFLALGALL 241


>gi|78222179|ref|YP_383926.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Geobacter metallireducens GS-15]
 gi|78193434|gb|ABB31201.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Geobacter metallireducens GS-15]
          Length = 259

 Score = 41.4 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 8/130 (6%)

Query: 11  VFLIPPFCLVFAALS--DLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLI 67
             ++  FC    A++  DL   +IP+ +S+  ++  F  +  L  + ++   + ++ G  
Sbjct: 102 FLVLFVFCSALVAVTFIDLDHQLIPDVISLPGIVVGFACSFALPWLGWKSSLIGIVAGGG 161

Query: 68  VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
             +     +        MGGGD+KLL     + GW  S    +F  +++G ++ V ++ V
Sbjct: 162 SLLSVARLYELLTKKEGMGGGDIKLLAMMGAFLGWR-SVPFIIFASSLIGSVIGVTLMLV 220

Query: 124 RMITNHIPIF 133
           +   + + I 
Sbjct: 221 QKKDSKLAIP 230


>gi|207739461|ref|YP_002257854.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609]
 gi|206592837|emb|CAQ59743.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609]
          Length = 154

 Score = 41.4 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 13/132 (9%)

Query: 36  VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVW 95
           + + +      T   L  D+  + L    G I        +A   MG GDVK  T   + 
Sbjct: 10  LVLSIALVKFGTVMALAYDWRDVWL---GGAIALAGFLPLYALGWMGAGDVKFFTVAGLL 66

Query: 96  FGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP---------KSFLMKNK 146
            GW    ++     ++L G+ ++ IL +R      P   M +               +  
Sbjct: 67  AGW-HGLVAIWLVSSVLAGVHALAILLLRRADASAPSAWMLMRVCPALARWDPGHAGRRG 125

Query: 147 IPYGIAISMGGL 158
           IPY   +++G L
Sbjct: 126 IPYAAYMAIGLL 137


>gi|78357401|ref|YP_388850.1| hypothetical protein Dde_2358 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219806|gb|ABB39155.1| membrane protein, putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 185

 Score = 41.4 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 17/185 (9%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + + + ++    L+   ++D+ +  IPN ++   + + L          + +   L    
Sbjct: 1   MQTVMPILLVSILMTDVVTDIRAMRIPNWLTFPAMIAGLAGHGAA-GGADGLLFSLAGLG 59

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
           +   +    F   +MG GDVKL+ +   + G    F +F+ + +  GG  ++ +L   + 
Sbjct: 60  LGAALMLLPFLAGVMGAGDVKLMGAAGAFLGAQGVFGAFI-WTSFAGGAYALGVLLFHLP 118

Query: 127 TNHIPIFGMFVPKSFLMKNK---------------IPYGIAISMGGLISYPDSYLFKVAL 171
                   +    + ++                  + YG+AI+ G + S   S       
Sbjct: 119 QLRAVGRALHTSFTTMLVTGEMTYTPATGGKALPRLCYGVAIAAGTVTSMYFSGALDAVF 178

Query: 172 MGLSA 176
            G+ A
Sbjct: 179 SGIMA 183


>gi|291533367|emb|CBL06480.1| Type IV leader peptidase family [Megamonas hypermegale ART12/1]
          Length = 135

 Score = 41.4 bits (96), Expect = 0.054,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           LI    L   A  D  +  I N+  + +    ++   +  +D E I   LL+ LI+F + 
Sbjct: 9   LIVCMYLGKIAWVDFKTLKIKNKSLLYLGLILVVRLMIFNIDLEKIIYALLINLIIFCVI 68

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
           + F+   +MG GD+KL    A+W  + P  +  ++   I GGI+++
Sbjct: 69  Y-FYPKQLMGAGDLKLALVLALWCNY-PQCIVAIYVSFIFGGIVAI 112


>gi|260431092|ref|ZP_05785063.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414920|gb|EEX08179.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 181

 Score = 41.4 bits (96), Expect = 0.054,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 20/152 (13%)

Query: 21  FAALSDLFSAMIPNRVSIVMLGSFLLTAFLL----------------GMDYELIALHLLV 64
           + A +D+    I N   + +   F++   +                 G    + A  L  
Sbjct: 21  YVAFTDMREMRIKNHAVVALACVFVIVGLIALPPWSGDWIPGAIGPFGFALPVYAWQLFH 80

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            ++V +      A  +MG GD K   + A +      +L     +A   G  +    T R
Sbjct: 81  LVVVLLFGILLNAAGVMGAGDAKFCAAAAPFVWLGDLYLVLAILMAATLGAFA----THR 136

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156
           +  +          +S+    + P G+A++ G
Sbjct: 137 LAKHSRLRQFAPTWESWDRGKQFPMGLALAGG 168


>gi|308174504|ref|YP_003921209.1| membrane protease and transmethylase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607368|emb|CBI43739.1| membrane protease and transmethylase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328554423|gb|AEB24915.1| membrane protease and transmethylase [Bacillus amyloliquefaciens
           TA208]
 gi|328912827|gb|AEB64423.1| membrane protease and transmethylase [Bacillus amyloliquefaciens
           LL3]
          Length = 250

 Score = 41.0 bits (95), Expect = 0.056,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 16/140 (11%)

Query: 22  AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81
             ++DL   +IP++V +  L   ++      +D         V     +I   F +   +
Sbjct: 109 VTVTDLQYMLIPDKVLLFFLPLLIVGRIFSPLDSWYAGFAGAVCGFFLLIFIMFVSKGGI 168

Query: 82  GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141
           G GDVKL     +  G     ++F   V I+G +  +                       
Sbjct: 169 GAGDVKLFGVIGLALGVKLVLIAFFLSV-IIGAVYGMC---------------AAAGGRL 212

Query: 142 LMKNKIPYGIAISMGGLISY 161
             K   P+  AI+ G  +SY
Sbjct: 213 GKKQPFPFAPAIAAGSAVSY 232


>gi|255657461|ref|ZP_05402870.1| putative type IV prepilin leader peptidase [Clostridium difficile
           QCD-23m63]
 gi|296449056|ref|ZP_06890846.1| possible prepilin peptidase [Clostridium difficile NAP08]
 gi|296879879|ref|ZP_06903852.1| possible prepilin peptidase [Clostridium difficile NAP07]
 gi|296262149|gb|EFH08954.1| possible prepilin peptidase [Clostridium difficile NAP08]
 gi|296429168|gb|EFH15042.1| possible prepilin peptidase [Clostridium difficile NAP07]
          Length = 260

 Score = 41.0 bits (95), Expect = 0.057,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 18/160 (11%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI---VMLGSFLLTAFLLGMDYELIALHLL 63
             +  +L+    L+     D+   +IP+ + I   +    F L    + +   +I   + 
Sbjct: 99  TSTVYYLVLVSLLIIITFIDIDHFIIPDEILIFGAIFAIIFNLLFKEIPVKDSIIGFFIC 158

Query: 64  VGLIVFIICFCFFAFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            G +  I+    F      MGGGD+KL     ++ G   S L+ L  V + G +  + ++
Sbjct: 159 GGSVWLIVLLIEFVIKKECMGGGDIKLFAMLGLYMGVKNSLLTALLSVYV-GAVYGICVI 217

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            +               K     + IPYG  IS+G LI+ 
Sbjct: 218 IISKT------------KGKEYNSIIPYGPFISVGALITI 245


>gi|239500938|ref|ZP_04660248.1| Type II secretory pathway, prepilin signal peptidase PulO
           [Acinetobacter baumannii AB900]
          Length = 286

 Score = 41.0 bits (95), Expect = 0.058,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+R ++ +      +  F +           L+G +   I
Sbjct: 138 LVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   ++LG I+ + +L +R   
Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256

Query: 128 NHIPIFGMFVPKSF 141
                        +
Sbjct: 257 QPFAFGPYIAIAGW 270


>gi|15615597|ref|NP_243901.1| late competence protein required for processing and translocation
           [Bacillus halodurans C-125]
 gi|10175657|dbj|BAB06754.1| late competence protein required for processing and translocation
           [Bacillus halodurans C-125]
          Length = 162

 Score = 41.0 bits (95), Expect = 0.058,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82
           +SDL   +IP+R+ +     F+L  A L  ++    A    V   + +        N +G
Sbjct: 26  VSDLVYMIIPDRIILFFAILFVLFRATLAPLNPWWDAWAGAVVGYILLFIVYLIYPNGIG 85

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
           GGDVKL T      GW  + ++ +   ++ G I     + +  I    PI 
Sbjct: 86  GGDVKLFTVLGFVLGWKLTLVA-IMLSSLCGAIGGGVGMMLGRIKRREPIP 135


>gi|311278339|ref|YP_003940570.1| Prepilin peptidase [Enterobacter cloacae SCF1]
 gi|308747534|gb|ADO47286.1| Prepilin peptidase [Enterobacter cloacae SCF1]
          Length = 273

 Score = 41.0 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIV 68
           V  +    L   A+ D+   ++P+ +   +L   L+ A   L  +      L  ++  + 
Sbjct: 118 VLFLFAVLLCLVAI-DVDHLLLPDSLVFTLLWGGLVFAVGGLTPVSLRDAVLGAVITWLF 176

Query: 69  FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
                  F+       MG GD+KL  +   W GW    +  L  ++ + G+L   +L  R
Sbjct: 177 LSAVVLIFSVVRKKEGMGAGDIKLYGALGGWLGWQQ--MPALLVLSSVLGMLMFMLLKKR 234

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            +++        +     +   IP+G AI+ GG   Y
Sbjct: 235 RVSD--------IDTDGHIYQVIPFGPAIATGGFSLY 263


>gi|115379232|ref|ZP_01466348.1| peptidase, A24 (type IV prepilin peptidase) family [Stigmatella
           aurantiaca DW4/3-1]
 gi|310822228|ref|YP_003954586.1| type IV leader peptidase family protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363764|gb|EAU62883.1| peptidase, A24 (type IV prepilin peptidase) family [Stigmatella
           aurantiaca DW4/3-1]
 gi|309395300|gb|ADO72759.1| Type IV leader peptidase family protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 178

 Score = 41.0 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 66/166 (39%), Gaps = 14/166 (8%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVS---IVMLGSFLLTAFLLGMDYELIALHLLV 64
            +A++ +    LV + ++D+    I + V+   + +     L    +G     +    + 
Sbjct: 5   QTALWTVLGAALVISVVTDVLHHRILDIVTYPLMALALGVRLAFEGVGDLETGLVSGGVS 64

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           G+ +  +         MG GDVKL+       G+ P+ ++   F++++G   +V  L  +
Sbjct: 65  GVGLAALLLPGALRGRMGWGDVKLMGGVGAVLGF-PAVMAAAAFISLVGAFQAVVTLIWK 123

Query: 125 MITNHIPIFG----------MFVPKSFLMKNKIPYGIAISMGGLIS 160
                               M   K+   +  IPYG+AI++G   +
Sbjct: 124 GEVWDTLASAGRRWAVRARLMRTEKALAPQRHIPYGVAIALGTFWA 169


>gi|256810876|ref|YP_003128245.1| Peptidase A24A domain protein [Methanocaldococcus fervens AG86]
 gi|256794076|gb|ACV24745.1| Peptidase A24A domain protein [Methanocaldococcus fervens AG86]
          Length = 340

 Score = 41.0 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +   V+++    L+ A+++D+   +IP++ +I M+   L       + Y       +V  
Sbjct: 3   LLGIVYIVNFILLILASITDIGERIIPHKYTIAMIIMNLA------VGYYYFGFDAIVAF 56

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
               I     +   MGGGDVKL T+ A  F +  SF+ ++
Sbjct: 57  FSTFILCLILSIG-MGGGDVKLFTALAPIFAYPNSFVFYI 95


>gi|169797414|ref|YP_001715207.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Acinetobacter baumannii AYE]
 gi|213155772|ref|YP_002317817.1| type IV pilus prepilin peptidase PilD [Acinetobacter baumannii
           AB0057]
 gi|215484852|ref|YP_002327091.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
           [Acinetobacter baumannii AB307-0294]
 gi|301345145|ref|ZP_07225886.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
           [Acinetobacter baumannii AB056]
 gi|301510694|ref|ZP_07235931.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
           [Acinetobacter baumannii AB058]
 gi|301594954|ref|ZP_07239962.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
           [Acinetobacter baumannii AB059]
 gi|332854394|ref|ZP_08435346.1| type 4 prepilin-like protein leader peptide-processing enzyme
           [Acinetobacter baumannii 6013150]
 gi|332867625|ref|ZP_08437757.1| type 4 prepilin-like protein leader peptide-processing enzyme
           [Acinetobacter baumannii 6013113]
 gi|169150341|emb|CAM88238.1| type 4 prepilin-like proteins leader peptide processing enzyme
           (Protein secretion protein XCPA)[Includes: Leader
           peptidase (Prepilin peptidase); N-methyltransferase ]
           [Acinetobacter baumannii AYE]
 gi|213054932|gb|ACJ39834.1| type IV pilus prepilin peptidase PilD [Acinetobacter baumannii
           AB0057]
 gi|213987959|gb|ACJ58258.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
           [Acinetobacter baumannii AB307-0294]
 gi|332728070|gb|EGJ59461.1| type 4 prepilin-like protein leader peptide-processing enzyme
           [Acinetobacter baumannii 6013150]
 gi|332733819|gb|EGJ64966.1| type 4 prepilin-like protein leader peptide-processing enzyme
           [Acinetobacter baumannii 6013113]
          Length = 286

 Score = 41.0 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+R ++ +      +  F +           L+G +   I
Sbjct: 138 LVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   ++LG I+ + +L +R   
Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256

Query: 128 NHIPIFGMFVPKSF 141
                        +
Sbjct: 257 QPFAFGPYIAIAGW 270


>gi|221197778|ref|ZP_03570824.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2M]
 gi|221204664|ref|ZP_03577681.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2]
 gi|221175521|gb|EEE07951.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2]
 gi|221181710|gb|EEE14111.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2M]
          Length = 166

 Score = 41.0 bits (95), Expect = 0.064,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M              F A SD+    +PN + +  L    L+AFL    + +  L   +G
Sbjct: 1   MAQLIFIGAFLAWAAFVAASDVRVRRVPNSLVLGGLALAFLSAFLNANPFGISPLSATIG 60

Query: 66  LIVFIICFC-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           +++ +I F  FF   +MG  D+K+      W G   + L      ++  GI ++ ++ V 
Sbjct: 61  MLIGLIAFVPFFLLRVMGAADLKVFAVLGAWCG-AHALLWLWIVASLAAGIHALVLMLVS 119

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYG 150
                                  PY 
Sbjct: 120 RTPIRALWPQGQPVLMLGGHRATPYA 145


>gi|260556306|ref|ZP_05828525.1| type IV pilus prepilin peptidase PilD [Acinetobacter baumannii ATCC
           19606]
 gi|260410361|gb|EEX03660.1| type IV pilus prepilin peptidase PilD [Acinetobacter baumannii ATCC
           19606]
          Length = 286

 Score = 41.0 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+R ++ +      +  F +           L+G +   I
Sbjct: 138 LVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   ++LG I+ + +L +R   
Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256

Query: 128 NHIPIFGMFVPKSF 141
                        +
Sbjct: 257 QPFAFGPYIAIAGW 270


>gi|291521717|emb|CBK80010.1| Flp pilus assembly protein, protease CpaA [Coprococcus catus GD/7]
          Length = 175

 Score = 41.0 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 7/145 (4%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLV 64
           M+     L+    +  AA+ D  S  +PN + +   L  ++L  +  G    +       
Sbjct: 1   MILQMTLLLF---MAAAAVKDYRSYWVPNELILAGALNGYILRFWADGSGGVIDG--AAG 55

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            +++FI+C   F  ++ G GD+KL+ + AV+ G   S +  L    + G ++S+  +   
Sbjct: 56  MVLIFILCAGLFVLSMFGAGDLKLMMAMAVYMGPVKS-VRILIVSLVFGAVISLLKMLKY 114

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149
            I      + +   +        PY
Sbjct: 115 DICKERFRYLLHYAQRIQRHGAEPY 139


>gi|300709417|ref|YP_003735231.1| peptidase A24A prepilin type IV [Halalkalicoccus jeotgali B3]
 gi|299123100|gb|ADJ13439.1| peptidase A24A prepilin type IV [Halalkalicoccus jeotgali B3]
          Length = 326

 Score = 41.0 bits (95), Expect = 0.068,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 19  LVFAALSDLFSAMIP--NRVSIVMLGSFLLTA------FLLGMDYELIALHLLVGLI-VF 69
           L +AA  D+ +  +P      +  L + L         F  G+ +    +   + L+ V 
Sbjct: 7   LAWAAHRDVRTRRVPARTWTPLFALAAVLFVWDGIASYFAGGLTWAYFLVGAAISLLLVI 66

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF--LSFLF-FVAILGGILSVFILT 122
              + F+ F   GG D K L   A+ F   P++    +L   VA   G  ++ IL 
Sbjct: 67  PAAYGFWRFGAFGGADAKALIVLALLFPTYPTYEIGPYLVPVVATPTGAFALTILA 122


>gi|153830662|ref|ZP_01983329.1| leader peptidase PilD [Vibrio cholerae 623-39]
 gi|229514052|ref|ZP_04403514.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae TMA 21]
 gi|254226638|ref|ZP_04920218.1| leader peptidase PilD [Vibrio cholerae V51]
 gi|125620857|gb|EAZ49211.1| leader peptidase PilD [Vibrio cholerae V51]
 gi|148873871|gb|EDL72006.1| leader peptidase PilD [Vibrio cholerae 623-39]
 gi|229349233|gb|EEO14190.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           cholerae TMA 21]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.068,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
           VF    L   + L+ A   D  + ++P+++++ +L   +  A L    +      +  + 
Sbjct: 128 VFGVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW    +  +   +++G I  +  
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246

Query: 121 L 121
           L
Sbjct: 247 L 247


>gi|320527729|ref|ZP_08028899.1| peptidase, A24 family protein [Solobacterium moorei F0204]
 gi|320131894|gb|EFW24454.1| peptidase, A24 family protein [Solobacterium moorei F0204]
          Length = 158

 Score = 41.0 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG----MDYELIALHLLVGLIV 68
           ++    L      D     IPN + I M+  F++ A ++       +  + +  + G  +
Sbjct: 18  VLLFSLLWCVCYIDYLIMEIPNEIHIGMIILFIIHACMINEINIQPWIRMLVMFVCGYFI 77

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
           FI+C   F    +GGGD+KLL+  +++  +   ++       + 
Sbjct: 78  FILCEKLFHKECIGGGDLKLLSCMSLFLSFQKIWIVLSIACILA 121


>gi|262280752|ref|ZP_06058535.1| type IV pilus prepilin peptidase PilD [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257652|gb|EEY76387.1| type IV pilus prepilin peptidase PilD [Acinetobacter calcoaceticus
           RUH2202]
          Length = 286

 Score = 41.0 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+R ++ +      +  F +           L+G +   I
Sbjct: 138 LVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFSIYTTPTSAIWGYLIGFLCLWI 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   ++LG I+ + +L +R   
Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256

Query: 128 NHIPIFGMFVPKSF 141
                        +
Sbjct: 257 QPFAFGPYIAIAGW 270


>gi|260550515|ref|ZP_05824725.1| type IV pilus prepilin peptidase PilD [Acinetobacter sp. RUH2624]
 gi|260406430|gb|EEW99912.1| type IV pilus prepilin peptidase PilD [Acinetobacter sp. RUH2624]
          Length = 286

 Score = 41.0 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+R ++ +      +  F +           L+G +   I
Sbjct: 138 LVLTWILIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   ++LG I+ + +L +R   
Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256

Query: 128 NHIPIFGMFVPKSF 141
                        +
Sbjct: 257 QPFAFGPYIAIAGW 270


>gi|153827237|ref|ZP_01979904.1| leader peptidase PilD [Vibrio cholerae MZO-2]
 gi|149738851|gb|EDM53187.1| leader peptidase PilD [Vibrio cholerae MZO-2]
          Length = 291

 Score = 41.0 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64
           VF    L   + L+ A   D  + ++P+++++ +L   +  A L    +      +  +V
Sbjct: 128 VFGVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMV 187

Query: 65  GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           G +     +  F        MG GD KLL +   W GW    +  +   +++G I  +  
Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246

Query: 121 L 121
           L
Sbjct: 247 L 247


>gi|20094140|ref|NP_613987.1| prepilin-cleaving (type IV) signal peptidase [Methanopyrus
          kandleri AV19]
 gi|19887147|gb|AAM01917.1| Prepilin-cleaving (type IV) signal peptidase [Methanopyrus
          kandleri AV19]
          Length = 324

 Score = 41.0 bits (95), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
          FL        AA++DL   ++PNR++   + +  + A +  +D   +   LL   + F +
Sbjct: 5  FLAGLAVATVAAITDLKWGIVPNRLTYPAIVAGAIYAAV--IDPSHLGYALLDAGVAFGV 62

Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWF 96
                  ++GGGDVKLL S  ++ 
Sbjct: 63 TLVLNVLGVLGGGDVKLLPSLTLFL 87


>gi|229057034|ref|ZP_04196428.1| Peptidase A24A domain protein [Bacillus cereus AH603]
 gi|228720311|gb|EEL71887.1| Peptidase A24A domain protein [Bacillus cereus AH603]
          Length = 249

 Score = 41.0 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++DL   +IPNR+ I      +L    + +   + +L     + + + C      + +GG
Sbjct: 122 VTDLVYMLIPNRILIWFALLLILECIFVPLVTWIDSLAGSGTIFILLYCMQKIYPDGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GDVKLL+                  V + GG +++F+ +   + +      +   K   +
Sbjct: 182 GDVKLLSLLGC-------------IVGVKGGFITLFLASCFSLCSFGIGIAL---KRINI 225

Query: 144 KNKIPYGIAISMGGL 158
           +  IP+G  IS+G +
Sbjct: 226 RTPIPFGPFISLGAI 240


>gi|254177482|ref|ZP_04884137.1| putative fimbriae assembly-related protein [Burkholderia mallei
           ATCC 10399]
 gi|160698521|gb|EDP88491.1| putative fimbriae assembly-related protein [Burkholderia mallei
           ATCC 10399]
          Length = 149

 Score = 40.6 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 19/148 (12%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+  + L   AL+DL +  +          +    A +        A H  +G   F + 
Sbjct: 7   LVASWTLASLALADLRTRRL----------ATFAVALVGAPGDGGFASHAALGAAAFALG 56

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              F    + GGDVKL     +W G   +     + VA   G+  + +  V +     P 
Sbjct: 57  AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRAPR 111

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
              +    F     +PYG+A++ GGL++
Sbjct: 112 VLAW----FAPARGVPYGVALAAGGLLA 135


>gi|113476284|ref|YP_722345.1| type 4 prepilin peptidase 1 [Trichodesmium erythraeum IMS101]
 gi|110167332|gb|ABG51872.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Trichodesmium erythraeum IMS101]
          Length = 273

 Score = 40.6 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 19/136 (13%)

Query: 19  LVFAALSDLFSAMIPNRV--SIVMLGSFL--LTAFLLGMDYELIALHLLVGLIVFIICFC 74
           L+  ++ DL +  +PN +  S +++G F   LT F        +  +L++G+I  ++   
Sbjct: 114 LLALSMIDLDTMTLPNPLTQSGLIVGLFFQMLTTFEENFQVNNLVNYLIIGIIGAVVGLW 173

Query: 75  FF---------AFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA----ILGGILSVF 119
            F         AF   +MGGGD KL      W GW    L+     A    + GG +++ 
Sbjct: 174 LFDLISIFGSIAFGQTVMGGGDAKLAAMIGAWLGWKYLLLTCFLACAMGALVGGGAIALR 233

Query: 120 ILTVRMITNHIPIFGM 135
           +L  R      P   M
Sbjct: 234 LLDRRQPIPFGPFLAM 249


>gi|125973850|ref|YP_001037760.1| peptidase A24A, prepilin type IV [Clostridium thermocellum ATCC
           27405]
 gi|256004303|ref|ZP_05429285.1| peptidase A24A prepilin type IV [Clostridium thermocellum DSM 2360]
 gi|281418011|ref|ZP_06249031.1| peptidase A24A prepilin type IV [Clostridium thermocellum JW20]
 gi|125714075|gb|ABN52567.1| peptidase A24A, prepilin type IV [Clostridium thermocellum ATCC
           27405]
 gi|255991737|gb|EEU01837.1| peptidase A24A prepilin type IV [Clostridium thermocellum DSM 2360]
 gi|281409413|gb|EFB39671.1| peptidase A24A prepilin type IV [Clostridium thermocellum JW20]
 gi|316939953|gb|ADU73987.1| peptidase A24A prepilin type IV [Clostridium thermocellum DSM 1313]
          Length = 209

 Score = 40.6 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +    + +    L  ++L D    ++ N++    +   L+ A L     + I   +L   
Sbjct: 67  LEMIRYAVLYILLASSSLKDYKERIVSNKLVAAGIVLGLVMAALDAEPEKFIQSVILFIA 126

Query: 67  IVFIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           I  I+    FA    +G GD KL+  + ++ G T   +S LF+  IL GI  + +L ++ 
Sbjct: 127 IALIMSLISFATKGGVGMGDTKLIAVSGLYTGLT-GIISVLFYSFILSGITGIVLLILKK 185


>gi|262166466|ref|ZP_06034203.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           mimicus VM223]
 gi|262026182|gb|EEY44850.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio
           mimicus VM223]
          Length = 288

 Score = 40.6 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
           F+   L+  + L+ A   DL + ++P+++++ +L S +  A   L  +      +  + G
Sbjct: 129 FAVAALLFSYVLIAATFIDLDTMLLPDQLTLPLLWSGIALALFGLSPVSLTDAVIGSMAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100
            +     +  F        MG GD KLL +   W GW  
Sbjct: 189 YLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ 227


>gi|229166238|ref|ZP_04293997.1| Peptidase A24A domain protein [Bacillus cereus AH621]
 gi|228617183|gb|EEK74249.1| Peptidase A24A domain protein [Bacillus cereus AH621]
          Length = 249

 Score = 40.6 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 45/115 (39%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++DL   +IPNR+ I      +L    + +   + +L     + + + C      + +GG
Sbjct: 122 VTDLVYMLIPNRILIWFALLLILECIFVPLVTWIDSLAGSGTIFILLYCMQKIYPDGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           GDVKLL+      G    F++             + I   R+       FG F+ 
Sbjct: 182 GDVKLLSLLGCIVGVKGVFITLFLASCFSLCFFGIGIALKRINIRTPIPFGPFIS 236


>gi|319782180|ref|YP_004141656.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168068|gb|ADV11606.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 179

 Score = 40.6 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 9/148 (6%)

Query: 18  CLVFAALSDLFSAMIPNR---VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
            L   A  D  +  I NR   + + +    LL   L    +  + L    GL++F+    
Sbjct: 16  LLARIAWVDFTTQKISNRDVLLLLCLGAGGLLLLSLQSGSWWDMGLSAGAGLLLFVAFLP 75

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
           F+A   +G GDVKL+                L   ++L  + ++    +      +P   
Sbjct: 76  FWALRKIGAGDVKLIAVVPFLISGGA-----LAVFSVLLLVFALATAAIVKNPFLLPAGA 130

Query: 135 MFVPKSFLMKNK-IPYGIAISMGGLISY 161
             +    L +   +P+G+ IS+  + + 
Sbjct: 131 FRLIVQHLDRKGMVPFGVPISLAAICTL 158


>gi|293610128|ref|ZP_06692429.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827360|gb|EFF85724.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 286

 Score = 40.6 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+R ++ +      +  F +           L+G +   I
Sbjct: 138 LVLTWILIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   ++LG I+ + +L +R   
Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256

Query: 128 NHIPIFGMFVPKSF 141
                        +
Sbjct: 257 QPFAFGPYIAIAGW 270


>gi|315303312|ref|ZP_07873945.1| type IV leader peptidase family protein [Listeria ivanovii FSL
           F6-596]
 gi|313628327|gb|EFR96827.1| type IV leader peptidase family protein [Listeria ivanovii FSL
           F6-596]
          Length = 201

 Score = 40.6 bits (94), Expect = 0.084,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L F  ++D+    +PN + I+   + L   FL       +   +++ +I + + F  F  
Sbjct: 72  LAFFVITDILYMHVPNSIIILFSVTMLFIYFLFHQPLLNLVYSIIMSIIFYGLFFFVFRK 131

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
             +G GD+KL    + + G+   +  FLFF++IL G + + I
Sbjct: 132 G-IGLGDIKLFIILSTFLGFQTGY--FLFFLSILAGTIVLLI 170


>gi|188586929|ref|YP_001918474.1| peptidase A24A prepilin type IV [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351616|gb|ACB85886.1| peptidase A24A prepilin type IV [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 145

 Score = 40.6 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 18/149 (12%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           LI    +  A   D+    IPN++++  +    L + L+G     +    L  ++   + 
Sbjct: 12  LILIVVMALALYFDIKEFRIPNKITLSAIV-IGLCSGLIGNGVSGLYTSFLGAIVGLALL 70

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
              F    MG GDVKLLT+           L     +AI+GG+++++   +         
Sbjct: 71  LIPFFLGGMGAGDVKLLTAIG-AIKGVEFVLYTAAAMAIIGGLIALYYYLILKQRKMFF- 128

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                          PYGIAI  G L+S 
Sbjct: 129 ---------------PYGIAIVFGALVSL 142


>gi|229016650|ref|ZP_04173587.1| Peptidase A24A domain protein [Bacillus cereus AH1273]
 gi|229022865|ref|ZP_04179385.1| Peptidase A24A domain protein [Bacillus cereus AH1272]
 gi|228738400|gb|EEL88876.1| Peptidase A24A domain protein [Bacillus cereus AH1272]
 gi|228744640|gb|EEL94705.1| Peptidase A24A domain protein [Bacillus cereus AH1273]
          Length = 249

 Score = 40.6 bits (94), Expect = 0.087,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 44/115 (38%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++DL   +IPNR+ I      +L    + +   + ++     + + + C        +GG
Sbjct: 122 VTDLVYMLIPNRILIWFAFLLILECIFVPLVTWIDSIAGSGTIFILLYCMQKIHPAGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           GDVKLL+      G    F++             + I   R+       FG F+ 
Sbjct: 182 GDVKLLSLLGFIIGVKGIFITLFLASCFSLCFFGIGIALKRIKIRTPIPFGPFIS 236


>gi|307258828|ref|ZP_07540560.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 11
          str. 56153]
 gi|306867179|gb|EFM99035.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 11
          str. 56153]
          Length = 98

 Score = 40.6 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 6  MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
          +  S +  +    L+    +DL   +I NRV + +L   +  ++L+       ++     
Sbjct: 3  LFISTLIAVMVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGSISWFPA 57

Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG 97
          ++  +I F  F  N++G GDVKLL    +   
Sbjct: 58 ILCLVIGFVLFLLNVIGAGDVKLLAVLMLAVP 89


>gi|148975960|ref|ZP_01812749.1| hypothetical protein VSWAT3_06601 [Vibrionales bacterium SWAT-3]
 gi|145964705|gb|EDK29958.1| hypothetical protein VSWAT3_06601 [Vibrionales bacterium SWAT-3]
          Length = 96

 Score = 40.6 bits (94), Expect = 0.090,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 11/81 (13%)

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
            +G GD+K +   ++        L+F+   A  GGIL++  L          +    +  
Sbjct: 18  WIGAGDIKYVVILSLTIPVNDLLLAFIL-TAFSGGILAISYL----------VSKKLIRN 66

Query: 140 SFLMKNKIPYGIAISMGGLIS 160
               +  IPYGIAIS+G  ++
Sbjct: 67  KVGFQEGIPYGIAISIGFYLA 87


>gi|294501410|ref|YP_003565110.1| late competence protein ComC [Bacillus megaterium QM B1551]
 gi|294351347|gb|ADE71676.1| late competence protein ComC [Bacillus megaterium QM B1551]
          Length = 263

 Score = 40.6 bits (94), Expect = 0.090,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 1/131 (0%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +   V L     L    +SD+   ++PN+V +  L  FLL    + ++    +L      
Sbjct: 97  LELIVILTFVSFLTIIVVSDIAYMIVPNKVLLFFLPIFLLERLFIPLNSWSDSLMGGGIA 156

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
              +    F +   +G GD+KL     +  G     LS LF   ++GG +S+  L ++  
Sbjct: 157 FFLLFLIAFLSRGGLGEGDIKLYALIGIVLGVKLVLLS-LFLAILIGGTVSIGALLMKKA 215

Query: 127 TNHIPIFGMFV 137
              +PI  +  
Sbjct: 216 KVGVPIPFVPF 226


>gi|194366094|ref|YP_002028704.1| peptidase A24A prepilin type IV [Stenotrophomonas maltophilia
           R551-3]
 gi|194348898|gb|ACF52021.1| peptidase A24A prepilin type IV [Stenotrophomonas maltophilia
           R551-3]
          Length = 181

 Score = 40.6 bits (94), Expect = 0.090,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 23  ALSDLFSAMIPNR--VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80
           A+SDL++  +PN   +S  ++   L+ A            H+    +  +    F A   
Sbjct: 16  AISDLYARRVPNTWLLSACVIAVVLIVAGQFSAPRLPWGPHVAGAALGLVALLPFHALRW 75

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
           MG GDVK  +   +  GW      ++      G   ++ +++ R+  
Sbjct: 76  MGAGDVKFFSVLGLMLGWQALLPIWIAASLAAGAHAAIVLVSRRLGA 122


>gi|115351453|ref|YP_773292.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
 gi|115281441|gb|ABI86958.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD]
          Length = 166

 Score = 40.6 bits (94), Expect = 0.091,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 2/138 (1%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIIC 72
           I        A  D+   ++ N + I    + L+++ +    + +     L+G++V  +  
Sbjct: 9   IFFAWAALVAAGDIRFRLVRNSLVICGGTAALVSSLIHANPFGISTGQALIGMLVGLVSF 68

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
           F  FA  +MG  DVK+      W G  P  L      ++  G+  + ++ +         
Sbjct: 69  FPLFAMRVMGAADVKVFAVLGAWCGL-PILLWLWVIASLAAGVHVLGLMLLTRTPLGALW 127

Query: 133 FGMFVPKSFLMKNKIPYG 150
                  +   +   PY 
Sbjct: 128 VRGLPAMALAGRRSTPYA 145


>gi|254977129|ref|ZP_05273601.1| putative type IV prepilin leader peptidase [Clostridium difficile
           QCD-66c26]
 gi|255094458|ref|ZP_05323936.1| putative type IV prepilin leader peptidase [Clostridium difficile
           CIP 107932]
 gi|255316209|ref|ZP_05357792.1| putative type IV prepilin leader peptidase [Clostridium difficile
           QCD-76w55]
 gi|255518871|ref|ZP_05386547.1| putative type IV prepilin leader peptidase [Clostridium difficile
           QCD-97b34]
 gi|255652050|ref|ZP_05398952.1| putative type IV prepilin leader peptidase [Clostridium difficile
           QCD-37x79]
 gi|260685024|ref|YP_003216309.1| putative type IV prepilin leader peptidase [Clostridium difficile
           CD196]
 gi|260688682|ref|YP_003219816.1| putative type IV prepilin leader peptidase [Clostridium difficile
           R20291]
 gi|306521787|ref|ZP_07408134.1| putative type IV prepilin leader peptidase [Clostridium difficile
           QCD-32g58]
 gi|260211187|emb|CBA66662.1| putative type IV prepilin leader peptidase [Clostridium difficile
           CD196]
 gi|260214699|emb|CBE07352.1| putative type IV prepilin leader peptidase [Clostridium difficile
           R20291]
          Length = 260

 Score = 40.6 bits (94), Expect = 0.092,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 18/160 (11%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLL 63
             +  +L+    L+     D+   +IP+++ I        F L    + +   ++ + + 
Sbjct: 99  TSTIYYLVLVSLLIIITFIDIDHFIIPDKILIFGAIFSMIFNLLFKEIPVKDSILGVFIC 158

Query: 64  VGLIVFIICFCFFAFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            G +  I+    F      MGGGD+KL     ++ G     L+ L  V + G +  + ++
Sbjct: 159 GGSVWIIVLLIEFVIKKECMGGGDIKLFAMLGLYMGVKNGLLTALLSVYV-GAVYGICVI 217

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            +  I                  + IPYG  IS+G LI+ 
Sbjct: 218 IISRIKGK------------EYNSVIPYGPFISIGALITI 245


>gi|260900212|ref|ZP_05908607.1| type IV prepilin leader peptidase [Vibrio parahaemolyticus AQ4037]
 gi|308110274|gb|EFO47814.1| type IV prepilin leader peptidase [Vibrio parahaemolyticus AQ4037]
          Length = 216

 Score = 40.6 bits (94), Expect = 0.093,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
           F+   +   F L+ A   DL + ++P+++++ +  + +  A   +  +  +   +  + G
Sbjct: 56  FTVALIFFTFFLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 115

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW  S    +   +++G I  +  L
Sbjct: 116 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLVQL 174

Query: 122 TVRMI 126
            ++  
Sbjct: 175 RLQKQ 179


>gi|303248281|ref|ZP_07334543.1| peptidase A24A prepilin type IV [Desulfovibrio fructosovorans JJ]
 gi|302490306|gb|EFL50218.1| peptidase A24A prepilin type IV [Desulfovibrio fructosovorans JJ]
          Length = 165

 Score = 40.6 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
           D+ +  IPN ++  +  + LL   +       +    L     FI+      F ++G GD
Sbjct: 25  DIRTKRIPNAITFPVAAALLLLHGVFS-GTTGLTSSALGLAGGFIVFLIPHLFGVLGAGD 83

Query: 86  VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
           VKL+       G T + L+ + F +I GG      L    +       G  +        
Sbjct: 84  VKLMAMVGAGLG-TQALLTAVLFTSIAGGAQFFVWLAWMRLAGTRKGRGYRLC------- 135

Query: 146 KIPYGIAISMGGLIS 160
              YG AI+ G L +
Sbjct: 136 ---YGPAIAAGALAT 147


>gi|262374020|ref|ZP_06067297.1| type IV pilus prepilin peptidase PilD [Acinetobacter junii SH205]
 gi|262311031|gb|EEY92118.1| type IV pilus prepilin peptidase PilD [Acinetobacter junii SH205]
          Length = 286

 Score = 40.3 bits (93), Expect = 0.098,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 6/136 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           LI  + L+     D  + ++P+R ++ +      +  F +           L+G +   I
Sbjct: 138 LILTWTLIALTFIDFDTQLLPDRFTLPLAALGLGINTFAIYTTASAAIWGFLIGFLCLWI 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   +++G I+ + ++ +R   
Sbjct: 198 VYYLFKIITGKEGMGYGDFKLLAALGAWMGPMMLPL-IVLLSSMVGAIIGIMLMKMRGEN 256

Query: 128 NHIPIFGMFVPKSFLM 143
                        ++ 
Sbjct: 257 QPFAFGPYIAIAGWIA 272


>gi|254443680|ref|ZP_05057156.1| Bacterial Peptidase A24 N-terminal domain family [Verrucomicrobiae
           bacterium DG1235]
 gi|198257988|gb|EDY82296.1| Bacterial Peptidase A24 N-terminal domain family [Verrucomicrobiae
           bacterium DG1235]
          Length = 293

 Score = 40.3 bits (93), Expect = 0.098,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 57/173 (32%), Gaps = 26/173 (15%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL------------LGMD 54
           + +   +I    LV  +  D     IP+R SI +       + L             G  
Sbjct: 106 LKALCIMIFAAMLVCGSFIDFDHMEIPDRFSIGLAVIGFALSVLIPELHGFDRADFAGAS 165

Query: 55  YELIALHLLVGLI-------VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLF 107
                  +L  LI       + ++         MG GDVKLL     + GW  +      
Sbjct: 166 INATLQSILGILIGSGTILWIALLAEIVLRKEAMGFGDVKLLGGIGAFLGWQGAIF---- 221

Query: 108 FVAILGGIL-SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
             +I GG L     L +  I   +           L+   IP+G  ++ G L+
Sbjct: 222 --SIFGGALIGCVGLLLWAIAKRMISSKRTSNDEALLGRHIPFGPMLAGGALL 272


>gi|325290041|ref|YP_004266222.1| Prepilin peptidase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965442|gb|ADY56221.1| Prepilin peptidase [Syntrophobotulus glycolicus DSM 8271]
          Length = 261

 Score = 40.3 bits (93), Expect = 0.099,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 22/152 (14%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L     L+  +  D+ +  +PN +     G FLL A  +G+  +       +G +    C
Sbjct: 118 LAFASLLIALSFIDMETMRLPNSLV---TGLFLLGAIKIGVFSKPGFFSAGLGAVGTAGC 174

Query: 73  FCFFAF---NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           F          +G GDVKL  +   + G+     + L    +   I  + I+T R   N 
Sbjct: 175 FLILHLIYNGGIGLGDVKLAGALGFFLGFPDIIFAVLVGSLLGTLIALLLIVTGRKGLNE 234

Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                            IP+G  +++G  + +
Sbjct: 235 ----------------PIPFGPFLAVGAFLMF 250


>gi|190192161|dbj|BAG48296.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Microcystis aeruginosa NIES-843]
          Length = 269

 Score = 40.3 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 27/146 (18%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF------- 78
           D  +  +PN ++   L   ++   LLG       ++L   +   ++    F         
Sbjct: 121 DFDTMTLPNCLTQSGLVLGIVFQTLLGWQNNQSVIYLFSAIASAVLGVWLFDLIRWGGSF 180

Query: 79  ----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
                 MGGGD KL      W GW    ++     AI G  + +  + +  +        
Sbjct: 181 ALRQQAMGGGDAKLAAMIGAWLGWQALLVTAFLACAI-GAAIGMTGIFLGKMA------- 232

Query: 135 MFVPKSFLMKNKIPYGIAISMGGLIS 160
                    K  IP+G  +++G L+S
Sbjct: 233 --------KKQAIPFGPLLALGALMS 250


>gi|149927149|ref|ZP_01915406.1| prepilin cysteine protease (C20) PilD [Limnobacter sp. MED105]
 gi|149824088|gb|EDM83309.1| prepilin cysteine protease (C20) PilD [Limnobacter sp. MED105]
          Length = 279

 Score = 40.3 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 4   SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHL 62
              V +   ++    L+  AL DL + ++P+ +++ +L    L   F+  +         
Sbjct: 124 PPGVVALALMVFAASLLALALIDLDTYLLPDSITLPLLWAGLLFNLFVEFVPLASAVSGA 183

Query: 63  LVGLIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
            +G +V  + +  F        MG GD KLL +   W G T S  S + F ++ G +  +
Sbjct: 184 AMGYLVLWLIYQLFKLATGKEGMGYGDFKLLAAIGAWLGVT-SLFSVVLFASVSGIVFGL 242

Query: 119 FILTVR 124
            I T+R
Sbjct: 243 IIQTIR 248


>gi|229010694|ref|ZP_04167892.1| Peptidase A24A domain protein [Bacillus mycoides DSM 2048]
 gi|228750588|gb|EEM00416.1| Peptidase A24A domain protein [Bacillus mycoides DSM 2048]
          Length = 249

 Score = 40.3 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 45/115 (39%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++DL   +IPNR+ I      +L    + +   + +L     + + + C      + +GG
Sbjct: 122 VTDLVYMLIPNRILIWFALLLILECIFVPLVTWIDSLAGSGTIFILLYCMQKIYPDGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           GDVKLL+      G    F++             + I   R+       FG F+ 
Sbjct: 182 GDVKLLSLLGCIVGVKGVFITLFLASCFSLCFFGISIALKRINIRTPIPFGPFIS 236


>gi|299532590|ref|ZP_07045979.1| peptidase A24A, prepilin type IV [Comamonas testosteroni S44]
 gi|298719393|gb|EFI60361.1| peptidase A24A, prepilin type IV [Comamonas testosteroni S44]
          Length = 196

 Score = 40.3 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 19/152 (12%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDY-ELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           DL +  IPNR++       LL   L    +       L    +   +    +  + +G G
Sbjct: 36  DLRTRRIPNRLTFGGAALALLYGLLAPHPHTGGFFWALGGMAVGLALMLPLYLLHALGAG 95

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF--- 141
           DVKL+     + G   +    + FV I GG++++  +     +  +        +     
Sbjct: 96  DVKLMAMVGSFLGPV-AAWQTVLFVFITGGLVAITYVLWHRTSGKLVRNSAEAMQLLYVN 154

Query: 142 --------------LMKNKIPYGIAISMGGLI 159
                              +PYG++I++G L 
Sbjct: 155 VAAGIRPDARSNSAHSVGTLPYGVSIALGTLA 186


>gi|242312119|ref|ZP_04811136.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b]
 gi|242135358|gb|EES21761.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b]
          Length = 166

 Score = 40.3 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 16/157 (10%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
              V AA  DL S  IPNR+  + L   L+    L   +   A  L        +   F+
Sbjct: 3   LLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAGLLLPFY 62

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP----- 131
               M  GDVKL+ +   W G T   L       ++GG  ++ ++  R     +      
Sbjct: 63  LVRGMAAGDVKLMLAIGAWVGPT-LALHIALATFVVGGAWALAVVAGRGRFRKLLANLRH 121

Query: 132 ----------IFGMFVPKSFLMKNKIPYGIAISMGGL 158
                                    +PYG+AI++G L
Sbjct: 122 LFAGAALLRVASAARAAPEIDSVGMLPYGVAIAIGTL 158


>gi|71278916|ref|YP_271097.1| type 4 prepilin-like proteins leader peptide processing enzyme PilD
           [Colwellia psychrerythraea 34H]
 gi|71144656|gb|AAZ25129.1| type 4 prepilin-like proteins leader peptide processing enzyme PilD
           [Colwellia psychrerythraea 34H]
          Length = 301

 Score = 40.3 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 62/160 (38%), Gaps = 21/160 (13%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFL-LTAFLLGMDYELIALHLLVG 65
           + +   L+  +CL+   + D    ++P+++++ +L   L +      +      +   VG
Sbjct: 143 ISTLWVLLLTWCLITLTMIDFDHMLLPDQITLPLLWLGLLININGTFIPLPDAVIGAAVG 202

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     F  F        MG GD KL      W GW    +  +   +++G I+ + ++
Sbjct: 203 YMSLFSVFWLFKVITGKEGMGYGDFKLFAVFGAWIGWQLLPI-LILMASVVGAIVGITLM 261

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                            K+   +  IP+G  +++ G I+ 
Sbjct: 262 LF---------------KNHQREQGIPFGPYLAVAGWITL 286


>gi|162456976|ref|YP_001619343.1| prepilin peptidase [Sorangium cellulosum 'So ce 56']
 gi|161167558|emb|CAN98863.1| Prepilin peptidase [Sorangium cellulosum 'So ce 56']
          Length = 321

 Score = 40.3 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG-- 83
           DL    IP+ ++I      + TA L  M +    +   VG  +  + F      I GG  
Sbjct: 134 DLEHMFIPDSITIGGAVLGVATASLRSMSFVDALVGAAVGFGIVWLPFVVIYPRIRGGRV 193

Query: 84  ----GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
               GD KLL     WFGW  +    L   A+ G I+++ +L +R
Sbjct: 194 GMGLGDAKLLMLAGAWFGWGGALF-VLGAGAVQGSIIAIAMLILR 237


>gi|332531739|ref|ZP_08407624.1| leader peptidase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038715|gb|EGI75157.1| leader peptidase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 297

 Score = 40.3 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66
            + +++   + LV     D+   ++P+++++ ++   L+ + +   +      +    G 
Sbjct: 139 QALLYIFVTWILVALTFIDIDHMLLPDQLTLPLVWLALIASVMGYTITPTDAIIGAACGY 198

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL       GW  S L+ +   +++G I+ + +L+
Sbjct: 199 LSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGW-QSLLTIILLSSVVGAIIGIALLS 257

Query: 123 VRMITNHIPIF 133
           ++      PI 
Sbjct: 258 IQGKDKATPIP 268


>gi|126701128|ref|YP_001090025.1| putative type IV prepilin leader peptidase [Clostridium difficile
           630]
 gi|115252565|emb|CAJ70408.1| putative type IV prepilin peptidase, A24A family [Clostridium
           difficile]
          Length = 260

 Score = 40.3 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 18/160 (11%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLL 63
             +  +L+    L+     D+   +IP+++ +        F L    + +   ++ + + 
Sbjct: 99  TSTIYYLVLVSLLIIITFIDIDHFIIPDKILVFGAIFSMIFNLLFKEIPVKDSILGVFIC 158

Query: 64  VGLIVFIICFCFFAFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            G +  I+    F      MGGGD+KL     ++ G     L+ L  V + G +  + ++
Sbjct: 159 GGSVWIIVLLIEFVIKKECMGGGDIKLFAMLGLYMGVKNGLLTALLSVYV-GAVYGICVI 217

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            +  I                  + IPYG  IS+G LI+ 
Sbjct: 218 IISRIKGK------------EYNSVIPYGPFISIGALITI 245


>gi|310829690|ref|YP_003962047.1| prepilin peptidase [Eubacterium limosum KIST612]
 gi|308741424|gb|ADO39084.1| prepilin peptidase [Eubacterium limosum KIST612]
          Length = 257

 Score = 40.3 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 2/128 (1%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + + V       L+   L D  +  IPN + I ++     + F+      +  +  +  +
Sbjct: 105 LQAVVGFAVAAILLAVTLIDFDTMTIPNGLVIALIIPVAASYFVFLEPSLISRVIGVFVI 164

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
            V ++          GGGDVKL+       GW  + L+   F+ ++ G +   I  +R  
Sbjct: 165 SVPMLVLSLVIPGGFGGGDVKLMAVAGFLLGWPCTLLA--TFIGLVLGGIVGVIKLIRKS 222

Query: 127 TNHIPIFG 134
                 FG
Sbjct: 223 GEKHMAFG 230


>gi|254492242|ref|ZP_05105416.1| Bacterial Peptidase A24 N-terminal domain family [Methylophaga
           thiooxidans DMS010]
 gi|224462567|gb|EEF78842.1| Bacterial Peptidase A24 N-terminal domain family [Methylophaga
           thiooxydans DMS010]
          Length = 289

 Score = 40.3 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     DL   ++P+++++  +        F +  D     +  + G +    
Sbjct: 135 LLLTWSLIALTFIDLDHQLLPDKITLPFVWLGIFFNLFGIYTDLASSVIGAIAGYLSLWS 194

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL     W GW       +   +++G ++ + ++ +R   
Sbjct: 195 IYHLFRLITGKEGMGYGDFKLLAVLGAWMGW-QYLPMIILLSSLVGAVVGISLILLRRHQ 253

Query: 128 NHIPIF 133
             IPI 
Sbjct: 254 RDIPIP 259


>gi|302392518|ref|YP_003828338.1| peptidase A24A domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302204595|gb|ADL13273.1| peptidase A24A domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 254

 Score = 40.3 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +   ++      L+ AA+ DL   +IPNR++   + + L+ + L        AL  LV  
Sbjct: 96  IQFMIYAFLSSLLLTAAVIDLKHQIIPNRITYFGIITGLILSLLFKHITIRSALLGLVIP 155

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI--LTVR 124
             F++         +G GDVK +     + G   + +S +F  +I+G ++ + +  L V+
Sbjct: 156 AGFLLLIAVITKGGLGMGDVKFIAMIGTYLGAKYTLIS-IFIGSIVGSVIGLALIGLGVK 214

Query: 125 MITNHIPIFGMFVPKSFLM 143
              + +P   +    + LM
Sbjct: 215 SRKDRVPFGPLLALGNLLM 233


>gi|264678240|ref|YP_003278147.1| peptidase A24A, prepilin type IV [Comamonas testosteroni CNB-2]
 gi|262208753|gb|ACY32851.1| peptidase A24A, prepilin type IV [Comamonas testosteroni CNB-2]
          Length = 196

 Score = 40.3 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 19/152 (12%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVGLIVFIICFCFFAFNIMGGG 84
           DL +  IPNR++   +   LL   L    +       L    +   +    +  + MG G
Sbjct: 36  DLRTRRIPNRLTFGGITLALLYGLLAHHPHSGGFFWALGGMAVGLALMLPLYLLHAMGAG 95

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF--- 141
           DVKL+     + G   +    + FV I GG+ ++       +   +        +     
Sbjct: 96  DVKLMAMVGSFLGPAATC-QVVIFVFITGGLAAISYALWHRMAGKLLRNSAEAVQLLYVN 154

Query: 142 --------------LMKNKIPYGIAISMGGLI 159
                              +PYG++I++G L 
Sbjct: 155 VAAGIRPDARSNSAHSVGTLPYGVSIALGTLA 186


>gi|255308535|ref|ZP_05352706.1| putative type IV prepilin leader peptidase [Clostridium difficile
           ATCC 43255]
          Length = 260

 Score = 40.3 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 18/160 (11%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLL 63
             +  +L+    L+     D+   +IP+++ +        F L    + +   ++ + + 
Sbjct: 99  TSTIYYLVLVSLLIIITFIDIDHFIIPDKILVFGAIFSMIFNLLFKEIPVKDSILGVFIC 158

Query: 64  VGLIVFIICFCFFAFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            G +  I+    F      MGGGD+KL     ++ G     L+ L  V + G +  + ++
Sbjct: 159 GGSVWIIVILIEFVIKKECMGGGDIKLFAMLGLYMGVKNGLLTALLSVYV-GAVYGICVI 217

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            +  I                  + IPYG  IS+G LI+ 
Sbjct: 218 IISRIKGK------------EYNSVIPYGPFISIGALITI 245


>gi|149185490|ref|ZP_01863806.1| peptidase A24A, prepilin type IV [Erythrobacter sp. SD-21]
 gi|148830710|gb|EDL49145.1| peptidase A24A, prepilin type IV [Erythrobacter sp. SD-21]
          Length = 163

 Score = 40.3 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 10/148 (6%)

Query: 5   KMVFSAVFLIPPFCLVFA-ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
            MVF+A +      L  A AL D+ +  +PN +  +ML + L  AF+ G  +  +AL L 
Sbjct: 2   AMVFAAAWFGALGILASAGALLDVCTRKLPNILCAIMLATGLTFAFVGG-GWPALALGLA 60

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
                F++ + F+     G GD K  T+TA +F        F+        +L V++   
Sbjct: 61  HVAAAFLLGYLFYLVGTFGAGDAKFYTATAGFFPLWDMLGLFVAITGAGFLLLLVWVFMK 120

Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGI 151
           R +           PK      K+PYG+
Sbjct: 121 RSLRTR--------PKDRSDFAKLPYGV 140


>gi|222109981|ref|YP_002552245.1| prepilin peptidase [Acidovorax ebreus TPSY]
 gi|221729425|gb|ACM32245.1| Prepilin peptidase [Acidovorax ebreus TPSY]
          Length = 293

 Score = 40.3 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 7/120 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + +A +      LV  A  D  + ++P+ +++ +L + LL A L  ++ + +   +    
Sbjct: 132 LTTAAWCGFSAALVTLACIDWDTTLLPDDITLPLLWAGLLAAVLRWIEVQPVDAVIGAAA 191

Query: 67  IVFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
               +   ++ F +      MG GD KL  +   WFGW  + +  +   +++G I+ + +
Sbjct: 192 GYLSLWSVYWGFKLATGKEGMGYGDFKLFAALGAWFGW-QALVPIILLASVIGAIVGIAM 250


>gi|260892922|ref|YP_003239019.1| peptidase A24A prepilin type IV [Ammonifex degensii KC4]
 gi|260865063|gb|ACX52169.1| peptidase A24A prepilin type IV [Ammonifex degensii KC4]
          Length = 159

 Score = 39.9 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
           DL    IPN + +  L   L      G  +  +   L   L+   +    +    +GGGD
Sbjct: 19  DLRWRRIPNWLLLPALLLALALRGWEG-GWPAVWAGLQGWLVGIGLLLLPYLRRGVGGGD 77

Query: 86  VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF---VPKSFL 142
           VKLL       G   +  +FL   A+LGG++S+++L    +         +   +P S  
Sbjct: 78  VKLLGVLGACGGPLFALHTFLLG-AVLGGLVSLYLLVRSSLLRPALRVVWWEFFLPGSLP 136

Query: 143 MKNKI--PYGIAISMGGLISY 161
           + + +  PYG+  ++GG+++ 
Sbjct: 137 LSSGLFFPYGVCFALGGVLAL 157


>gi|146276353|ref|YP_001166512.1| hypothetical protein Rsph17025_0297 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554594|gb|ABP69207.1| hypothetical protein Rsph17025_0297 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 163

 Score = 39.9 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 5/136 (3%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
           ++ A SD+    IPN+  + +   FL+   +  + +E      L  L+V +I F      
Sbjct: 20  LWVAWSDMKFMKIPNKAVMALALVFLVVGPMA-LPFEDWLWRGLHLLVVLVIGFLMNLGR 78

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
           ++G GD K   + A +F      L+     A L G  +    + R +    P        
Sbjct: 79  LVGAGDAKFAAAMAPFFALGDLRLAIGLLAASLLGAFA----SHRGLGLVPPFRSATAEW 134

Query: 140 SFLMKNKIPYGIAISM 155
               +   P G+A++ 
Sbjct: 135 ESWRRRDFPMGLALAG 150


>gi|253998221|ref|YP_003050284.1| Prepilin peptidase [Methylovorus sp. SIP3-4]
 gi|253984900|gb|ACT49757.1| Prepilin peptidase [Methylovorus sp. SIP3-4]
          Length = 291

 Score = 39.9 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 21/153 (13%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIIC 72
           +  F L+     DL + ++P+ +++ +L   LL     G  D          G ++    
Sbjct: 142 LFVFALIALTFIDLDTQLLPDDITLPLLWLGLLVNLYGGFTDLSSAVTGAAAGYLILWSI 201

Query: 73  FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           +  F        MG GD KLL +   WFGW     + +   ++ G ++ + ++       
Sbjct: 202 YWLFKLITGKEGMGYGDFKLLAAIGAWFGW-QMLPAVILLSSLAGSVIGIGLILFARHGR 260

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
             P               IP+G  +++GG+ + 
Sbjct: 261 STP---------------IPFGPYLALGGIAAL 278


>gi|255102714|ref|ZP_05331691.1| putative type IV prepilin leader peptidase [Clostridium difficile
           QCD-63q42]
          Length = 260

 Score = 39.9 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 18/160 (11%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLL 63
             +  +L+    L+     D+   +IP+++ +        F L    + +   ++ + + 
Sbjct: 99  TSTIYYLVLVSLLIIITFIDIDHFIIPDKILVFGAIFSMIFNLLFKEIPVKDSILGVFIC 158

Query: 64  VGLIVFIICFCFFAFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            G +  I+    F      MGGGD+KL     ++ G     L+ L  V + G +  + ++
Sbjct: 159 GGSVWIIVLLIEFVIKKECMGGGDIKLFAMLGLYMGVKNGLLTALLSVYV-GAVYGICVI 217

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            +  I                  + IPYG  IS+G LI+ 
Sbjct: 218 IISRIKGK------------EYNSVIPYGPFISIGALITI 245


>gi|107022591|ref|YP_620918.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054]
 gi|116689540|ref|YP_835163.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424]
 gi|170732844|ref|YP_001764791.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3]
 gi|105892780|gb|ABF75945.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054]
 gi|116647629|gb|ABK08270.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424]
 gi|169816086|gb|ACA90669.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3]
          Length = 164

 Score = 39.9 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 6/139 (4%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+      +     V  AL D+    IPN + I    S  + A        +    + V 
Sbjct: 1   MILLTGVGVFLAWAVLVALEDIRHRRIPNSLVIGGFVSAFVLAGHSPFGISVNQALIGV- 59

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           LI F+  F FF   +MG  DVK+      W G       ++        +L+       +
Sbjct: 60  LIGFLSLFPFFVLRVMGAADVKVFAVLGAWCGPHALLWLWIIAS-----LLAFAHAGTLV 114

Query: 126 ITNHIPIFGMFVPKSFLMK 144
                P+  ++  +S  M+
Sbjct: 115 FATRTPVSALWQRRSPTMQ 133


>gi|206891143|ref|YP_002249074.1| bacterial Peptidase A24 N-terminal domain family
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206743081|gb|ACI22138.1| bacterial Peptidase A24 N-terminal domain family
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 247

 Score = 39.9 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG------MDYELIALHLL 63
              LI    ++  +  D+   +IP+++S+ ++    + +           D++   + ++
Sbjct: 98  LFILIFISAMIVVSFIDIDFQIIPDQISVPLIFIGFIFSLFSHGYTGFVSDFKESLIGIV 157

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           VG    +I     +   MGGGD+KL  +   + GW  + L+ +F  +++G I+ + I
Sbjct: 158 VGGGSLLIVSII-SKGGMGGGDIKLNAAVGAFLGWKAALLT-IFIGSLIGSIVGIII 212


>gi|262370087|ref|ZP_06063414.1| leader peptidase [Acinetobacter johnsonii SH046]
 gi|262315126|gb|EEY96166.1| leader peptidase [Acinetobacter johnsonii SH046]
          Length = 286

 Score = 39.9 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+R ++ +      + ++ +     +     ++G +   I
Sbjct: 138 LVLTYILIALTFIDFDTQLLPDRYTLTLAALGLGVNSYAIYTTPTMAIWGYIIGFLCLWI 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   + +G I+ + +L VR   
Sbjct: 198 VYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLI-VLLSSFVGAIIGIILLKVRKEN 256

Query: 128 NHIPIFGMFVPKSFLM 143
                        ++ 
Sbjct: 257 QPFAFGPYIAIAGWIA 272


>gi|170696789|ref|ZP_02887898.1| peptidase A24A prepilin type IV [Burkholderia graminis C4D1M]
 gi|170138305|gb|EDT06524.1| peptidase A24A prepilin type IV [Burkholderia graminis C4D1M]
          Length = 166

 Score = 39.9 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M  S V L+        A+ D  S  I N + +V L + +L A      + + A     G
Sbjct: 1   MQVSFVLLVFMLWCACVAICDYRSRHISNVLVVVGLITAVLCALFNISPFGISAAQAAAG 60

Query: 66  LIVFIICFC-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
             V ++    FFA  +MG  DVK+      W G   + L      ++  G+ ++++L   
Sbjct: 61  AAVGLVALLPFFALGMMGAADVKVFAVLGAWCGV-HALLGLWAVASVAAGLHALWVLVAT 119

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYG 150
                  +           +   P+ 
Sbjct: 120 RTRVAALLQRRAPTFELAGRRSTPFA 145


>gi|89899600|ref|YP_522071.1| peptidase A24A, prepilin type IV [Rhodoferax ferrireducens T118]
 gi|89344337|gb|ABD68540.1| peptidase A24A, prepilin type IV [Rhodoferax ferrireducens T118]
          Length = 192

 Score = 39.9 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 65/172 (37%), Gaps = 23/172 (13%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIV------MLGSFLLTAFLLGMDYELIAL 60
           +   +  +    L+   ++DL S  IPN + +       +  +  L +  + +       
Sbjct: 10  IAIMIHTLLAVMLLTVVIADLRSRRIPNTLVLTGLVLAFIAHTIALASGSVPLAGSTWWA 69

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
            L   L   +     +  +  G GDVKL+     + G  P+ LS + +  + GG+LS+  
Sbjct: 70  PLAGLLTGLLPLMPLYFLHATGAGDVKLMGMVGAFVG-APTVLSAVLYTLVAGGLLSLVF 128

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNK----------------IPYGIAISMG 156
           +  R +         F+   + ++                  +PY +AI++G
Sbjct: 129 MLGRGVAAQTLANVRFLLTDWALRASSGQGARLAPLQTTAARLPYAVAIALG 180


>gi|237733724|ref|ZP_04564205.1| prepilin peptidase [Mollicutes bacterium D7]
 gi|229383322|gb|EEO33413.1| prepilin peptidase [Coprobacillus sp. D7]
          Length = 260

 Score = 39.9 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    L+   + D  +  IPN + I ++   ++ A L         +  +  +  F++  
Sbjct: 113 VLAMILLTITMIDFDTMTIPNGLVIALVAPVIVCAVLEPQISISSRVIGMASVSGFMLLM 172

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
                +  GGGD+KL+       GW  + L+    + + GGI + +++ 
Sbjct: 173 TLAIPDCFGGGDMKLMFVCGFMLGWINTLLAGFIGL-LAGGIYASYLMV 220


>gi|297583742|ref|YP_003699522.1| peptidase A24A domain-containing protein [Bacillus selenitireducens
           MLS10]
 gi|297142199|gb|ADH98956.1| peptidase A24A domain protein [Bacillus selenitireducens MLS10]
          Length = 253

 Score = 39.9 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 17/156 (10%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65
           +   V L+    LV   +SDL + +IP++V +      LL    +  +D    A      
Sbjct: 99  MELVVALLFLSMLVIITVSDLSTMLIPDKVLLFFGIPILLLRMSVAPLDPWWTAFAGAGL 158

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
               ++     +   MGGGD+KL        G   + LS LF  A++G +  +  +  R 
Sbjct: 159 GFGILLLLAVASRGGMGGGDIKLYLVIGFVLGPIETVLS-LFLAALVGLVYGLPRIVKRQ 217

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                P               IP+G  I++G +I+Y
Sbjct: 218 TGRGNP---------------IPFGPFIALGAVIAY 238


>gi|167031694|ref|YP_001666925.1| prepilin peptidase [Pseudomonas putida GB-1]
 gi|166858182|gb|ABY96589.1| Prepilin peptidase [Pseudomonas putida GB-1]
          Length = 288

 Score = 39.9 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65
           V + + L   +CL+  +L D    ++P+ + + ++    ++ AF +           + G
Sbjct: 129 VEALLALPLTWCLLALSLIDADHQLLPDALVLPMLWLGLIVNAFGIYAPLTDALWGAVAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KL+     W GW    L+ L   +++G ++ + +L
Sbjct: 189 YLSLWTVYWLFKLITGKEGMGYGDFKLMALIGAWGGWQVLPLTLLL-SSVVGALVGLCLL 247

Query: 122 TVRMITNHIPIF 133
            +R       I 
Sbjct: 248 RLRRHAMGTAIP 259


>gi|91776577|ref|YP_546333.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Methylobacillus flagellatus KT]
 gi|91710564|gb|ABE50492.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Methylobacillus flagellatus KT]
          Length = 288

 Score = 39.9 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 21/150 (14%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCF 75
           F L+     DL + ++P+ +++ +L + LL     G  D     +    G +V    +  
Sbjct: 142 FALIALTFIDLDTHLLPDDITLPLLWAGLLFNLDHGFTDISSAVIGAAAGYLVLWSVYWL 201

Query: 76  FAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
           F        MG GD KLL +   WFGW     + +   ++ G I+ + ++ +        
Sbjct: 202 FKLITGKEGMGYGDFKLLAALGAWFGW-QLLPAVILLSSVAGSIIGIGLIVL-------- 252

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                       +  IP+G  +++GG+ + 
Sbjct: 253 -------TKHGRETPIPFGPYLALGGIAAL 275


>gi|302037441|ref|YP_003797763.1| putative prepilin peptidase CpaA [Candidatus Nitrospira defluvii]
 gi|300605505|emb|CBK41838.1| putative Prepilin peptidase CpaA [Candidatus Nitrospira defluvii]
          Length = 159

 Score = 39.9 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 53/154 (34%), Gaps = 13/154 (8%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            L   A SDL  A IPN ++   +G   L           ++  +   LI   +   F+ 
Sbjct: 1   MLALGAASDLRCAKIPNWLTYSAMGG-GLLFHTTQEGLSGLSQSVGGLLIGIALFLAFYL 59

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM-----------I 126
              MG GDVK + +     G +   L       +LGG  +V                   
Sbjct: 60  LGGMGAGDVKFMGAVGSMVGLS-GILPAAGVTTLLGGAYAVATAIRHWGIGTGAWRILSP 118

Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                + G         + K+ YG+ I+ G +++
Sbjct: 119 FLAWALTGRLALAPPDTQPKLRYGVVIAAGTVVA 152


>gi|206559891|ref|YP_002230655.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia
           J2315]
 gi|198035932|emb|CAR51824.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia
           J2315]
          Length = 164

 Score = 39.9 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 6/139 (4%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+      +     V  AL D+    IPN + I    S  + A         +   L+  
Sbjct: 1   MILLTGVGVFLAWAVLVALEDIRHRRIPNSLVIGGFVSAFVLAGHNPFGIS-VNQALIGA 59

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           L+ F+  F FF   +MG  DVK+      W G       ++        +L+       +
Sbjct: 60  LVGFLSLFPFFVLRVMGAADVKVFAVLGAWCGPYALLWLWIIAS-----LLAFAHAGTLV 114

Query: 126 ITNHIPIFGMFVPKSFLMK 144
                P+  ++  +S  M+
Sbjct: 115 FATRTPVSALWQRRSPTMQ 133


>gi|294140771|ref|YP_003556749.1| type IV leader peptidase family [Shewanella violacea DSS12]
 gi|293327240|dbj|BAJ01971.1| type IV leader peptidase family [Shewanella violacea DSS12]
          Length = 195

 Score = 39.9 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 70/165 (42%), Gaps = 16/165 (9%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLI 67
           S   ++     + A + DL+   IPN++ ++ +   F + A+   +  E + +      +
Sbjct: 11  SLQLMLAGAFFIAAIVMDLYKEKIPNKLCLLAIFSGFAINAYYAQL--EGVLMAFFGFAL 68

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            FII F  F F I+G GD+KL+       G     ++ L +  + G   S+ ++  +   
Sbjct: 69  AFIILFPTFLFRILGAGDIKLMMGIGALMGPD-LLVASLAYGIVAGAGTSLLLIIWKTGF 127

Query: 128 NHIPIFGMFVPKSFLMKN------------KIPYGIAISMGGLIS 160
           + +          F +++            ++PY  A+++G L +
Sbjct: 128 SGLAKTLKRYWDCFYLRSYFKPEPGEAAGLRVPYAPALALGWLWA 172


>gi|237802034|ref|ZP_04590495.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024890|gb|EGI04946.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 290

 Score = 39.9 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|307153098|ref|YP_003888482.1| Prepilin peptidase [Cyanothece sp. PCC 7822]
 gi|306983326|gb|ADN15207.1| Prepilin peptidase [Cyanothece sp. PCC 7822]
          Length = 270

 Score = 39.9 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 12/131 (9%)

Query: 19  LVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
           L+  +L D+ +  +PN ++   ++   +      G D+  I  +L+ G++  ++    F 
Sbjct: 114 LLALSLIDVDTMTLPNALTQSGLVLGLVFQGTRGGSDFSQIPHNLMFGIVGAVLGIWLFE 173

Query: 78  F-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
                         MGGGD KL      W GW    L+     A+      V IL  +M 
Sbjct: 174 IIRWVGTLVFGQEAMGGGDPKLAAMIGAWLGWKYLLLTGFLACALGTAFGVVAILLTQMG 233

Query: 127 TNHIPIFGMFV 137
             H   FG F+
Sbjct: 234 RRHPIRFGPFL 244


>gi|330720594|gb|EGG98859.1| Leader peptidase (Prepilin peptidase) / N-methyltransferase [gamma
           proteobacterium IMCC2047]
          Length = 290

 Score = 39.9 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 21/155 (13%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVF 69
           + L+  + L+   + D    ++P+ +++ +L    +  +F L           + G +  
Sbjct: 135 LMLLLTWALITLTMIDFDHQLLPDSITLPLLWIGLIANSFGLFCSLPEALWGAVFGYLSL 194

Query: 70  IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
              +  F        MG GD KLL     WFGW       +   +++G I+ +F+L ++ 
Sbjct: 195 WSVYWLFKLLTGKEGMGYGDFKLLAVLGAWFGW-QLLPMIILLSSLVGAIVGIFLLVLKN 253

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
               +P               IP+G  ++  G I+
Sbjct: 254 RGKSVP---------------IPFGPYLAAAGFIT 273


>gi|121593227|ref|YP_985123.1| type 4 prepilin peptidase 1 [Acidovorax sp. JS42]
 gi|120605307|gb|ABM41047.1| type 4 prepilin peptidase 1 [Acidovorax sp. JS42]
          Length = 293

 Score = 39.9 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 7/120 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + +A +      LV  A  D  + ++P+ +++ +L + LL A L  ++ + +   +    
Sbjct: 132 LTTAAWCGFSAALVTLACIDWDTTLLPDDITLPLLWAGLLAAVLRWIEVQPVDAVIGAAA 191

Query: 67  IVFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
               +   ++ F +      MG GD KL  +   WFGW  + +  +   +++G I+ + +
Sbjct: 192 GYLSLWSVYWGFKLATGKEGMGYGDFKLFAALGAWFGW-QALVPIILLASVIGAIVGIAM 250


>gi|90407088|ref|ZP_01215277.1| type 4 prepilin peptidase [Psychromonas sp. CNPT3]
 gi|90311810|gb|EAS39906.1| type 4 prepilin peptidase [Psychromonas sp. CNPT3]
          Length = 290

 Score = 39.9 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           LI  + L+  +  D    ++P+++++ +L    L+      +      +  ++G +    
Sbjct: 138 LIFTWVLICLSYIDFDVMLLPDQLTLPLLWVGLLVNLSYSFVSINDAVVGAILGYLSLWS 197

Query: 72  CFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   WFGW    L  +   +  G I+ + +L +    
Sbjct: 198 VYWLFKLATGKEGMGYGDFKLLAALGAWFGWQALPL-IILLSSFSGAIIGIVLLLLSKNK 256

Query: 128 NHIPIF 133
              P+ 
Sbjct: 257 ESKPLP 262


>gi|242238921|ref|YP_002987102.1| prepilin peptidase [Dickeya dadantii Ech703]
 gi|242130978|gb|ACS85280.1| Prepilin peptidase [Dickeya dadantii Ech703]
          Length = 283

 Score = 39.9 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
            L  AAL D  + ++P+ V++ +L    L       +  +   +  + G +   + +  F
Sbjct: 141 MLTVAALIDARTQLLPDVVTLPLLWCGLLFNLVDTFVPLDEAVIGAVAGYLSLWLVYWGF 200

Query: 77  AF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
                   +G GD KLL +   W GW  S  + +   ++ G +L++   ++R +    P+
Sbjct: 201 RLLSGREALGYGDFKLLAALGAWLGW-QSLPNLVLIASLTGLLLTLCWRSIRRVNLQQPL 259

Query: 133 F 133
            
Sbjct: 260 A 260


>gi|332998906|gb|EGK18497.1| tadV [Shigella flexneri VA-6]
 gi|333000004|gb|EGK19587.1| tadV [Shigella flexneri K-218]
          Length = 90

 Score = 39.9 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
           + F  F+  I+GGGDVKLLT  ++         +FL  +   G ++ +  L  
Sbjct: 1   MGFFLFSAGIIGGGDVKLLTVLSLAID-EHELANFLVAMTFCGALVVLAGLLF 52


>gi|222056163|ref|YP_002538525.1| peptidase A24A domain protein [Geobacter sp. FRC-32]
 gi|221565452|gb|ACM21424.1| peptidase A24A domain protein [Geobacter sp. FRC-32]
          Length = 263

 Score = 39.9 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
               I    LV     DL   +IP+ +S+  ++  F+ + FL  + ++   + +L+G   
Sbjct: 103 LFLFIFSSALVTITFIDLEHQIIPDIISLPGIIIGFVASFFLPWLGWKNSLIGMLLGGGS 162

Query: 69  FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            ++    + F      MGGGD+KLL     + GW  S    +F  +++G I+ V ++ V+
Sbjct: 163 LLVVAYGYQFLTKKEGMGGGDIKLLAMMGAFLGWR-SVPFIIFVASLVGSIVGVTLMLVQ 221

Query: 125 MITNHIPIF 133
              + + I 
Sbjct: 222 KKDSKLAIP 230


>gi|302189196|ref|ZP_07265869.1| prepilin peptidase [Pseudomonas syringae pv. syringae 642]
          Length = 290

 Score = 39.9 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  LI  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QAAAMLILSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|321312338|ref|YP_004204625.1| membrane protease and transmethylase [Bacillus subtilis BSn5]
 gi|291485220|dbj|BAI86295.1| hypothetical protein BSNT_04077 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320018612|gb|ADV93598.1| membrane protease and transmethylase [Bacillus subtilis BSn5]
          Length = 178

 Score = 39.5 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 16/149 (10%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    L+  A++D+   +IPNR+ I  L        +  +D     L       +F+  
Sbjct: 30  VVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAV 89

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
                   +GGGD+KL        G      +F F V I     +  +LT R        
Sbjct: 90  IAAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGR-------- 141

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                      +  +P+  AI+ G +++Y
Sbjct: 142 --------LAKRQPLPFAPAIAAGSILAY 162


>gi|282165638|ref|YP_003358023.1| hypothetical protein MCP_2968 [Methanocella paludicola SANAE]
 gi|282157952|dbj|BAI63040.1| hypothetical protein [Methanocella paludicola SANAE]
          Length = 159

 Score = 39.5 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
           D  +  IPNR++I ++ + L      G         +L  ++ +   +  +   + GGGD
Sbjct: 14  DYRTMRIPNRLTIPLIAAGLALMAARGYPL---GPAVLTCIVSYAYVYGLWKLRMWGGGD 70

Query: 86  VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
            KL+    +        L F+   ++    + + 
Sbjct: 71  AKLVLGLFLMASPAYPPLYFIAAYSLCLAAVLLL 104


>gi|74318386|ref|YP_316126.1| type 4 prepilin peptidase 1 [Thiobacillus denitrificans ATCC 25259]
 gi|74057881|gb|AAZ98321.1| prepilin cysteine protease (C20) PilD [Thiobacillus denitrificans
           ATCC 25259]
          Length = 283

 Score = 39.5 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLL 63
             V +A  L+  + L+  A  DL + ++P+ +++ +L    L+                 
Sbjct: 124 PTVQAAGALLLVWMLIALAFIDLDTTLLPDSLTLPLLWAGLLINLGGHFASLPDAVAGAA 183

Query: 64  VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
            G +V    +  F        MG GD KLL +   W GW    ++ L   +++G ++ + 
Sbjct: 184 AGYLVLWSVYWMFKLVTGKEGMGYGDFKLLAAIGAWLGWQLLPVTLLL-ASVVGAVVGIT 242

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
           ++        +P               IP+G  ++ GGL++ 
Sbjct: 243 MIVAVKHDRRVP---------------IPFGPYLAGGGLVAL 269


>gi|332982938|ref|YP_004464379.1| peptidase A24A prepilin type IV [Mahella australiensis 50-1 BON]
 gi|332700616|gb|AEE97557.1| peptidase A24A prepilin type IV [Mahella australiensis 50-1 BON]
          Length = 145

 Score = 39.5 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 21  FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF-- 78
           +AA +DL    I + V + +     L   L         +       VF + F  FA   
Sbjct: 18  YAAATDLKRREIDHWVPLTVAVYGTLYQLLYAHRLPEALICTAA---VFAVLFAVFAVSN 74

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSF 105
              GGGDVKLLTS A+++G     + F
Sbjct: 75  GGFGGGDVKLLTSLALFYGSNIFVVVF 101


>gi|109899647|ref|YP_662902.1| prepilin peptidase [Pseudoalteromonas atlantica T6c]
 gi|109701928|gb|ABG41848.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Pseudoalteromonas atlantica T6c]
          Length = 300

 Score = 39.5 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 67/167 (40%), Gaps = 23/167 (13%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
            +   ++  + LV     D+ + ++P+++++ +L   LL + +        ++ +     
Sbjct: 141 SALAAVVLTWVLVALIFIDIDTMLLPDQLTLPLLWMGLLFSIINPDVTPTDSI-IGATTG 199

Query: 68  VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
              +   ++AF +      MG GD KLL +   W GW    +  +   +++G ++ + IL
Sbjct: 200 YLSLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPI-VILMSSLVGAVIGISIL 258

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
           T+               +       IP+G  +++ G ++        
Sbjct: 259 TI---------------QGKDKGQAIPFGPYLAIAGWLTLLYGDWIS 290


>gi|332305386|ref|YP_004433237.1| Prepilin peptidase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172715|gb|AEE21969.1| Prepilin peptidase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 298

 Score = 39.5 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 66/167 (39%), Gaps = 23/167 (13%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
            +   ++  + LV     D+ + ++P+++++ +L   LL + +        ++ +   + 
Sbjct: 140 SALAGVVMTWILVALIFIDIDTMLLPDQLTLPLLWMGLLFSIVNPAVTSADSI-IGATVG 198

Query: 68  VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
              +   ++AF +      MG GD KLL +   W GW       +   +++G ++ + +L
Sbjct: 199 YLSLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWMGW-QYLAIVVLMSSLVGAVIGISVL 257

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168
           +                +       IP+G  +++ G ++        
Sbjct: 258 SF---------------QGKDKGQAIPFGPYLAIAGWLTLLYGDWIS 289


>gi|312795077|ref|YP_004027999.1| Type 4 prepilin peptidase pilD [Burkholderia rhizoxinica HKI 454]
 gi|312166852|emb|CBW73855.1| Type 4 prepilin peptidase pilD [Burkholderia rhizoxinica HKI 454]
          Length = 330

 Score = 39.5 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 6/116 (5%)

Query: 23  ALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--- 78
           +  DL + ++P+ +++ +L    L+    +    +   +    G +     +  F     
Sbjct: 191 SAIDLETKLLPDSLTLPLLWAGLLINLHAVFAPLDAAVIGAAAGYLSLWAVYWLFKLVRG 250

Query: 79  -NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
              +G GD KL  +   WFGW+P  L  +   ++ G I+ +     + +    P+ 
Sbjct: 251 AEGIGYGDFKLFAAIGAWFGWSP-LLQVILVASVCGAIVGLGATLAKRMRLEEPLP 305


>gi|221213142|ref|ZP_03586118.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD1]
 gi|221167355|gb|EED99825.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD1]
          Length = 166

 Score = 39.5 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 2/127 (1%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC-FFAFNIMGG 83
           SD+    +PN + +  L    L+AFL    + +  L   +G+++ +I F  FF   +MG 
Sbjct: 20  SDVRVRRVPNSLVLGGLALAFLSAFLNANPFGISPLSATIGMLIGLIAFVPFFLLRVMGA 79

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
            D+K+      W G   + L      ++  GI ++ ++ V                    
Sbjct: 80  ADLKVFAVLGAWCG-AHALLWLWIVASLAAGIHALVLMLVSRTPIRALWPQGQPVLMLGG 138

Query: 144 KNKIPYG 150
               PY 
Sbjct: 139 HRATPYA 145


>gi|167841422|ref|ZP_02468106.1| peptidase A24A, prepilin type IV [Burkholderia thailandensis
           MSMB43]
          Length = 179

 Score = 39.5 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 55/156 (35%), Gaps = 14/156 (8%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
              V AA  DL S  IPNR+  + L   L+    L   +      L        +   F+
Sbjct: 16  LLAVVAASIDLASRRIPNRLIALGLVGALIVQCALPGPHNGFVAWLAGAATGAGLLLPFY 75

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
               M  GDVKL+ +   W G T +    L    + G      +   R +   +      
Sbjct: 76  VVRGMAAGDVKLMLAIGAWVGPTLALHIALATFVVGGAWALAVVARRRRLRKLLANLRHL 135

Query: 137 VPKSFLMK--------------NKIPYGIAISMGGL 158
              + L++                +PYG+AI++G L
Sbjct: 136 FAGAALLRDPSAARAAPGIDSVGTLPYGVAIAIGTL 171


>gi|149909549|ref|ZP_01898203.1| hypothetical protein PE36_17125 [Moritella sp. PE36]
 gi|149807454|gb|EDM67405.1| hypothetical protein PE36_17125 [Moritella sp. PE36]
          Length = 144

 Score = 39.5 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + +  +LI      F    D+ S  + N + +V+         L G          L  +
Sbjct: 3   LQALGWLIIAILSCFICYQDVKSRKVRNDIVMVLATVTFFLMILTGNYAATYICLGLFLV 62

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
            + +        N++  GD+KLL + ++        L+F+  +   GG+L+V        
Sbjct: 63  GLLLT-----QVNVIAAGDIKLLMAFSLAIKPDLILLTFVV-IGFTGGLLAVVY------ 110

Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
                   + + K     N IPY + I    +++   S
Sbjct: 111 -----YLSIRMNKLSKQDNGIPYALPICFSSVLAIAAS 143


>gi|189485485|ref|YP_001956426.1| A24A-like peptidase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287444|dbj|BAG13965.1| A24A-like peptidase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 218

 Score = 39.5 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 12/128 (9%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--------L 62
           +F    F L+  + +D F  +IP  V I ++ +  + +F+     E             L
Sbjct: 51  LFAFLTFSLISVSTTDYFHRIIPAIVPIFLIITGFIFSFMNSALGETYPSRFINSVLGIL 110

Query: 63  LVGLIVFIICFC---FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
             G ++ +  F     +    +GGGD+KL+    V+ GW  +  + +F  A++GGI  + 
Sbjct: 111 TGGGVLLVAGFLGQLIYKKEAIGGGDIKLMAGVGVFIGWEKALFA-VFIAAVMGGIAGLI 169

Query: 120 ILTVRMIT 127
           +L  + I 
Sbjct: 170 LLAAKKIE 177


>gi|167755496|ref|ZP_02427623.1| hypothetical protein CLORAM_01010 [Clostridium ramosum DSM 1402]
 gi|167704435|gb|EDS19014.1| hypothetical protein CLORAM_01010 [Clostridium ramosum DSM 1402]
          Length = 244

 Score = 39.5 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    L+   + D  +  IPN + I ++   ++ A L         +  +  +  F++  
Sbjct: 97  VLAMILLTITMIDFDTMTIPNGLVIALVAPVIVCAVLEPQISISSRVIGMASVSGFMLLM 156

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
                +  GGGD+KL+       GW  + L+    + + GGI + +++ 
Sbjct: 157 TLAIPDCFGGGDMKLMFVCGFMLGWINTLLAGFIGL-LAGGIYASYLMV 204


>gi|262273801|ref|ZP_06051614.1| leader peptidase (Prepilin peptidase)/N-methyltransferase
           [Grimontia hollisae CIP 101886]
 gi|262222216|gb|EEY73528.1| leader peptidase (Prepilin peptidase)/N-methyltransferase
           [Grimontia hollisae CIP 101886]
          Length = 289

 Score = 39.5 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 8/118 (6%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM--LGSFLLTAFLLGMDYELIALHLLVGL 66
           S   +   F LV     DL + ++P+++++ +   G  L    L  +  +   +  + G 
Sbjct: 130 SLAVIGATFVLVVLCFIDLDTLLLPDQMTLPLMWAGMLLALTGLSPVSLQDAVIGAMAGY 189

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFF--VAILGGILSV 118
           +     F  F        MG GD KLL +   W GW    +  L    V  +GGI+++
Sbjct: 190 LSLWSVFQLFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMVILMASMVGAIGGIITM 247


>gi|298155837|ref|YP_003717663.1| putative transmembrane pilus biosynthesis protein [Escherichia coli
           ETEC 1392/75]
 gi|156121674|gb|ABU50050.1| LngP [Escherichia coli]
 gi|297374434|emb|CBL93496.1| putative transmembrane pilus biosynthesis protein [Escherichia coli
           ETEC 1392/75]
          Length = 284

 Score = 39.5 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 17/170 (10%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           + +  +V  +V  +    L    + DL   ++P+ +   +L + LL A        L   
Sbjct: 108 LNQQPLVVISVLFLFSVLLCL-TVIDLDHLLLPDSLVFTLLWTGLLAATFEISPVHLKDA 166

Query: 61  HLLVGLIVFIICFCFFAFNIM------GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114
            + V      +    + F ++      GGGDVKL+++ + W GW     + L F +++G 
Sbjct: 167 VIGVCGTWLFLTVITYLFTVIRNKEGLGGGDVKLISALSAWVGWY-YIPALLVFSSVIG- 224

Query: 115 ILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164
              +F +  R +                    +P+G AIS+     Y  S
Sbjct: 225 -FILFFIAKRKMEFSSDTERTLYY-------VVPFGPAISLTAFFIYLSS 266


>gi|297544542|ref|YP_003676844.1| Prepilin peptidase [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296842317|gb|ADH60833.1| Prepilin peptidase [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 252

 Score = 39.5 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           ++     L+  +  D+   ++PN++ +V  +G  +    +         + L++G  +  
Sbjct: 103 YMFIAAILIAESFIDIDYKIVPNKIILVGFIGGIIFRILMYNYGLIDYIVGLILGGGILF 162

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI--LGGILSVFI 120
           +     +   MGGGD+KL+     + GW  + L     V I  LGG++ V +
Sbjct: 163 L-ISLISGGEMGGGDIKLMALIGFFIGWKLTILVLFLSVIIGALGGVILVAL 213


>gi|146296444|ref|YP_001180215.1| peptidase A24A, prepilin type IV [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410020|gb|ABP67024.1| peptidase A24A, prepilin type IV [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 152

 Score = 39.5 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M    + +     LV AA+ D     IPN  ++V+L        +L   Y  + +  +  
Sbjct: 4   MSKVILSVSFLLILVVAAIYDFKKREIPN-FTVVLLLFIAAVRVILNKSYSNVIIFAIYT 62

Query: 66  LIVFIICFCFFAFNI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
           L  F I        I  +G GD+KLL+  +++FG+    + FL         L+  I   
Sbjct: 63  LFFFAIYIFAERRGIYLLGEGDIKLLSVLSLYFGFDFIKVLFLACTTGFAMGLATGIKKK 122

Query: 124 RMITNHIPIFG 134
             +  ++P+  
Sbjct: 123 TYLKTYVPLAP 133


>gi|313497008|gb|ADR58374.1| Prepilin peptidase [Pseudomonas putida BIRD-1]
          Length = 283

 Score = 39.5 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65
           V + + L   +CL+  +L D    ++P+ + +  M    ++ AF + +         + G
Sbjct: 124 VEALLALPLTWCLLALSLIDADHQLLPDVLVLPTMWLGLIVNAFGIHVPLADALWGAVAG 183

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KL+     W GW    L+ L   +++G ++ + +L
Sbjct: 184 YLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLL-SSVVGALVGLCLL 242

Query: 122 TVRMITNHIPIF 133
             R       I 
Sbjct: 243 RFRRHALGTAIP 254


>gi|300694114|ref|YP_003750087.1| prepilin peptidase transmembrane protein (cpaa) [Ralstonia
           solanacearum PSI07]
 gi|299076151|emb|CBJ35464.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia
           solanacearum PSI07]
          Length = 154

 Score = 39.5 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 13/132 (9%)

Query: 36  VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVW 95
           + + +          L  D+  + L    G I        +A   MG GDVK      + 
Sbjct: 10  LVLSIALVGFGPVMALAYDWRDVWL---GGAIALAGFLPLYALGWMGAGDVKFFAVAGLL 66

Query: 96  FGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP---------KSFLMKNK 146
            GW    ++     ++L G+ ++ I+ +R +    P   M +               +  
Sbjct: 67  AGW-HGLVAIWLVSSVLAGVHALAIVLLRRVDASAPSAWMLMRVCPALARWDAGHAGRRG 125

Query: 147 IPYGIAISMGGL 158
           IPY   +++G L
Sbjct: 126 IPYAAYMALGLL 137


>gi|20091424|ref|NP_617499.1| hypothetical protein MA2598 [Methanosarcina acetivorans C2A]
 gi|19916565|gb|AAM05979.1| predicted protein [Methanosarcina acetivorans C2A]
          Length = 131

 Score = 39.5 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
             ++    LV A  +DL    + NR   +M    +     L     +   +++   ++F+
Sbjct: 3   RIILISLFLVLACYTDLRYRRVSNRSCFLMFVISVPFIVQL-----ISVRYVITVGLIFL 57

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           I F  F     GGGD K L   ++ F      +  +F  +++  +L +     R      
Sbjct: 58  IIFFAFKKGCFGGGDAKSLILISLLFPDPVLIIWIMFISSVIVIVLFLLKRVGRDTQIPF 117

Query: 131 PIF 133
            I 
Sbjct: 118 MIP 120


>gi|319938042|ref|ZP_08012442.1| hypothetical protein HMPREF9488_03278 [Coprobacillus sp. 29_1]
 gi|319806948|gb|EFW03587.1| hypothetical protein HMPREF9488_03278 [Coprobacillus sp. 29_1]
          Length = 155

 Score = 39.5 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
            L   A +D     I N +++  +   +L   LL    +   ++ L  +   I+C   F
Sbjct: 11 VLLSICAYTDTKFRKIYNWMTLPFIAIGILNTLLL-YGPKEGFMNCLWLIPALILCIILF 69

Query: 77 AFNIMGGGDVKLLTSTAVWFGWT 99
            + +GGGD KL+ S     G  
Sbjct: 70 KLHQIGGGDAKLILSVGALMGLE 92


>gi|315500688|ref|YP_004089489.1| peptidase A24A domain protein [Asticcacaulis excentricus CB 48]
 gi|315418700|gb|ADU15338.1| peptidase A24A domain protein [Asticcacaulis excentricus CB 48]
          Length = 264

 Score = 39.5 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF---FAFNIMG 82
           D+ +  +PN +  ++L    L + + G     +     V +++  + F          +G
Sbjct: 129 DIQTFRLPNPLVFMVLVFSGLLSVVRGEGLTSLLWAAGVFIVLKALQFILQKRSGVAALG 188

Query: 83  GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
            GD+KL+++ A+W G   S +++ F +A LG ++ + +   R      P   
Sbjct: 189 EGDIKLMSALALWLG---SSVAYAFTLASLGALVFIVLTRRRGRIPFGPFIA 237


>gi|120612326|ref|YP_972004.1| type 4 prepilin peptidase 1 [Acidovorax citrulli AAC00-1]
 gi|120590790|gb|ABM34230.1| type 4 prepilin peptidase 1 [Acidovorax citrulli AAC00-1]
          Length = 295

 Score = 39.5 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           LV  A  D  + ++P+ +++ +L   LL +        L A           +   ++AF
Sbjct: 146 LVTLACIDWDTTLLPDDITLPLLWGGLLGSAFQWTSVPLFASVAGAAAGYLSLWAVYWAF 205

Query: 79  NI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
            +      MG GD KL  +   WFGW  + +  +   +++G ++ +              
Sbjct: 206 KLATGKEGMGYGDFKLFAALGAWFGW-QALVPIILMASVIGALVGI-------------- 250

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160
            GM   +     N IP+G  ++  GL +
Sbjct: 251 -GMKFTRGLREGNYIPFGPFLAGAGLAA 277


>gi|22298019|ref|NP_681266.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Thermosynechococcus elongatus BP-1]
 gi|22294197|dbj|BAC08028.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Thermosynechococcus elongatus BP-1]
          Length = 248

 Score = 39.5 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 26  DLFSAMIPN----RVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI--ICFCFFAFN 79
           DL +  +P+       I  L +  LT  L G+   +IA  + + L   I       F   
Sbjct: 102 DLDTMTLPHPLTKWGLITGLLARGLTTGLGGITEGIIAAVIGIWLFDLIRWGGAIAFNQE 161

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
           +MGGGD KL      W GW    ++F    A+ GG++  F + +  I    PI 
Sbjct: 162 VMGGGDGKLAAMIGAWLGWQGLLVTFFLACAL-GGLMGGFGIALGWIQRRQPIP 214


>gi|221310747|ref|ZP_03592594.1| DNA-binding protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315072|ref|ZP_03596877.1| DNA-binding protein [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221319991|ref|ZP_03601285.1| DNA-binding protein [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324273|ref|ZP_03605567.1| DNA-binding protein [Bacillus subtilis subsp. subtilis str. SMY]
          Length = 178

 Score = 39.5 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 16/149 (10%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    L+  A++D+   +IPNR+ I  L        +  +D     L       +F+  
Sbjct: 30  VVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAV 89

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
                   +GGGD+KL        G      +F F V I     +  +LT R        
Sbjct: 90  IAAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGR-------- 141

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                      +  +P+  AI+ G +++Y
Sbjct: 142 --------LAKRQPLPFAPAIAAGSILAY 162


>gi|158521866|ref|YP_001529736.1| peptidase A24A domain-containing protein [Desulfococcus oleovorans
           Hxd3]
 gi|158510692|gb|ABW67659.1| peptidase A24A domain protein [Desulfococcus oleovorans Hxd3]
          Length = 259

 Score = 39.5 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGL 66
            S V+ +    L+     D+   +IP+ +S+  +   FL + F++        L +L G 
Sbjct: 101 ESLVYFVFIASLIVVIFIDIDYQIIPDVISLPGIPIFFLASVFIVRATVTDSLLGILAGG 160

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
              +     +        MGGGD+KLL       GW     + +F  ++ G ++ + I+ 
Sbjct: 161 GSLLAVAVIYRLITGKEGMGGGDIKLLAMIGALCGWQGVLFT-IFTSSLAGTVVGMVIMA 219

Query: 123 VRMITNHIPIF 133
           ++     + + 
Sbjct: 220 MQKKNMKLALP 230


>gi|117617611|ref|YP_858310.1| prepilin peptidase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559018|gb|ABK35966.1| prepilin peptidase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 290

 Score = 39.5 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIICFCFFA 77
           LV     DL   ++P+++++ +L   LL     G +      +  + G +V    +  F 
Sbjct: 144 LVALTFIDLDKMLLPDQLTLPLLWGGLLFNLAGGFIPLADAVIGAMAGYLVLWSLYWAFK 203

Query: 78  F----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
                  MG GD KLL +   W GW    +  L   +++G  + + ++ +R    + PI 
Sbjct: 204 LLTGKEGMGYGDFKLLAALGAWLGWQALPI-VLLLSSLVGAFIGIGLILLRNHHQNKPIP 262


>gi|322831057|ref|YP_004211084.1| Prepilin peptidase [Rahnella sp. Y9602]
 gi|321166258|gb|ADW71957.1| Prepilin peptidase [Rahnella sp. Y9602]
          Length = 277

 Score = 39.1 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 10/116 (8%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI----- 80
           DL + ++P+R+++ +L + LL   L G      AL+  V      + F +++  +     
Sbjct: 142 DLATYLLPDRLTLPLLWAGLLVHSLYGSVTLQNALYGAVA-GYLALWFLYWSVKLVSGKE 200

Query: 81  -MGGGDVKLLTSTAVWFGWTPSFLSFL-FFVAILGGILSVFILTVRMITNHIPIFG 134
            MG GD KLL +   W GW    L +L    A+ G + ++  +++  ++   P   
Sbjct: 201 GMGYGDFKLLAALGAWVGW--QMLPYLCILAALAGIVFTLVRVSIYKMSEQTPFGP 254


>gi|293391334|ref|ZP_06635668.1| flp operon protein B [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951868|gb|EFE01987.1| flp operon protein B [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 108

 Score = 39.1 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 15/116 (12%)

Query: 44  FLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL 103
           FLL A +     +   + ++  L   II F  F+   +G GD+KL +   +       F 
Sbjct: 2   FLLFAIIPFSLLKYQTIFVMPALCTLIIGFLLFSLRFIGAGDIKLASVLMLAIPSGEVFS 61

Query: 104 SFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
            F F      G++ +  L  R                 + +N +PYG+AIS+G +I
Sbjct: 62  FFFFTTFAGLGLIIIGWLFFRK---------------SIKENGLPYGVAISLGFMI 102


>gi|254282444|ref|ZP_04957412.1| type IV fimbrial biogenesis protein,prepilin cysteine protease
           (C20) PilD [gamma proteobacterium NOR51-B]
 gi|219678647|gb|EED34996.1| type IV fimbrial biogenesis protein,prepilin cysteine protease
           (C20) PilD [gamma proteobacterium NOR51-B]
          Length = 286

 Score = 39.1 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 26  DLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NI 80
           D+ + ++P+ +++ V+    +   F +    E   +  + G ++    +  F        
Sbjct: 145 DIDTRLLPDSITLPVLWLGLVFNLFGVFTSLEAAVMGAMAGYLILWSVYWLFKLVTGKEG 204

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
           MG GD KLL +   WFGW    L  +   + +G ++ + ++ ++     IP+ 
Sbjct: 205 MGYGDFKLLAAFGAWFGWQSLPL-IIVLSSFVGAVIGILLVMLKRSGRDIPMP 256


>gi|71735543|ref|YP_273100.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556096|gb|AAZ35307.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 290

 Score = 39.1 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|266619396|ref|ZP_06112331.1| prepilin peptidase [Clostridium hathewayi DSM 13479]
 gi|288869072|gb|EFD01371.1| prepilin peptidase [Clostridium hathewayi DSM 13479]
          Length = 190

 Score = 39.1 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + + +  +    L   A +D  +  IP+R++  +L    + +        L +  L    
Sbjct: 37  LRAVMIWLVCLILTAIAYTDFKTMHIPDRMTAALLIP-AVLSLGAESGISLFSRALGGAA 95

Query: 67  IVFIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           + F +     A     GGGD+KL+    +  GW P   +  F   + GG  ++++L  R 
Sbjct: 96  VSFPMFLMTLAVPGSFGGGDIKLMAVCGLILGW-PRVAAAGFLSVVTGGCYAIWLLATRR 154


>gi|228990408|ref|ZP_04150373.1| Peptidase A24A domain protein [Bacillus pseudomycoides DSM 12442]
 gi|228768934|gb|EEM17532.1| Peptidase A24A domain protein [Bacillus pseudomycoides DSM 12442]
          Length = 260

 Score = 39.1 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVGLIVFIICFCFF 76
            L+   ++DLF  +IP+ +       F++   F+  + +    +      IV  +    F
Sbjct: 127 LLIIITMTDLFYMLIPDVILFSFACLFVIEHIFISLVPWWEGLIGAGTIFIVLYLVQILF 186

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
             N +GGGDVKLL+      G    F+      ++      + +L  R+ +     FG F
Sbjct: 187 -PNGLGGGDVKLLSLLGFIIGAKAIFIVLCCASSLSLCFFGIGMLLKRITSRQPLPFGPF 245

Query: 137 VP 138
           + 
Sbjct: 246 IA 247


>gi|295706758|ref|YP_003599833.1| late competence protein ComC [Bacillus megaterium DSM 319]
 gi|294804417|gb|ADF41483.1| late competence protein ComC [Bacillus megaterium DSM 319]
          Length = 251

 Score = 39.1 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 1/131 (0%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +   V L     L    +SD+   ++PN+V +  L  FLL    + +     +L      
Sbjct: 97  LELIVILTFVSFLTIIVVSDIAYMIVPNKVLLFFLPIFLLERLFIPLTSWSDSLMGGGIA 156

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
              +    F +   +G GD+KL     +  G     LS LF   ++GG +S+  L ++  
Sbjct: 157 FFLLFLVAFLSRGGLGEGDIKLYGLIGIMLGVKLVLLS-LFLAILIGGTVSIGALLMKKA 215

Query: 127 TNHIPIFGMFV 137
              +PI  +  
Sbjct: 216 KVGVPIPFVPF 226


>gi|160900922|ref|YP_001566504.1| prepilin peptidase [Delftia acidovorans SPH-1]
 gi|160366506|gb|ABX38119.1| Prepilin peptidase [Delftia acidovorans SPH-1]
          Length = 294

 Score = 39.1 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGLI 67
           A + +    L+  AL D  + ++P+ +++ +L + LL++ L    +          VG +
Sbjct: 136 AAWCLFSAALLSLALIDWDTTLLPDDITLPLLWAGLLSSALHWTAVTLADAVWGAAVGYL 195

Query: 68  VFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
              + +  F        MG GD KL  +   WFGW  + +  +   +++G ++ + +
Sbjct: 196 SLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGW-QALVPIILISSVIGAVVGIAL 251


>gi|330987705|gb|EGH85808.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 290

 Score = 39.1 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|229817343|ref|ZP_04447625.1| hypothetical protein BIFANG_02605 [Bifidobacterium angulatum DSM
           20098]
 gi|229785132|gb|EEP21246.1| hypothetical protein BIFANG_02605 [Bifidobacterium angulatum DSM
           20098]
          Length = 278

 Score = 39.1 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 7/126 (5%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLLVGLIV 68
             L      +  A  DL   +I N +    LG   +   L  +        +H L+G +V
Sbjct: 119 ALLFFAAVSIVVAFIDLDHHLILNVIIYPSLGITAVLLALASLLTGDWMRMVHALIGAVV 178

Query: 69  FIICFCFFAFNI---MGGGDVKLLTSTAVWFGWT--PSFLSFLFFVAILGGILSVFILTV 123
               +   A      MGGGD+KL     +  GW   P  +   F    +GGI+S+ +L +
Sbjct: 179 LGAFYLLLALVWAGGMGGGDIKLAVLIGLTLGWLGWPQLIVGAFAAFFVGGIISIVLLAL 238

Query: 124 RMITNH 129
             +   
Sbjct: 239 HKVKLR 244


>gi|255262302|ref|ZP_05341644.1| peptidase A24A, prepilin type IV [Thalassiobium sp. R2A62]
 gi|255104637|gb|EET47311.1| peptidase A24A, prepilin type IV [Thalassiobium sp. R2A62]
          Length = 164

 Score = 39.1 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 9/157 (5%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M    +  +          ++ + +DL    I N     +  ++L+  FL+ +  ++   
Sbjct: 1   MSIPAIAAAWFLPFVAIIGIWVSYTDLKYLKIRNLAVYAIALTYLIAGFLV-LPTDVYLW 59

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTA--VWFGWTPSFLSFLFFVAILGGILSV 118
            L+   ++ +      AF +MG GD K L + A  VW G        +  + +   +L +
Sbjct: 60  QLVHLPVMLVFGMLLNAFGLMGAGDAKFLAAAAPMVWLG------DIVVLLGVYFAVLLI 113

Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155
             +  R+  N           S+    + P G+ ++ 
Sbjct: 114 SWVCHRIAMNTGLRKLGPDWASWTSGKRFPMGLPLAA 150


>gi|241763809|ref|ZP_04761855.1| Prepilin peptidase [Acidovorax delafieldii 2AN]
 gi|241366941|gb|EER61346.1| Prepilin peptidase [Acidovorax delafieldii 2AN]
          Length = 289

 Score = 39.1 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
               +V  A  D  + ++P+ +++ +L + LL +    ++  L             +   
Sbjct: 136 FSAAMVALAFIDWDTTLLPDDITLPLLWAGLLASAARWIEVPLFDSVTGAAGGYLSLWLV 195

Query: 75  FFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           ++ F +      MG GD KL  +   WFGW  + +  +   +++G ++ + +
Sbjct: 196 YWGFKLATGKEGMGYGDFKLFAALGAWFGW-QALVPIILMSSVIGALVGIGL 246


>gi|82703250|ref|YP_412816.1| prepilin peptidase [Nitrosospira multiformis ATCC 25196]
 gi|82411315|gb|ABB75424.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Nitrosospira multiformis ATCC 25196]
          Length = 302

 Score = 39.1 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
           V +   L   + +V  A  DL + ++PN ++I +L   LL     G  D     +  +VG
Sbjct: 145 VIAFAALALVWAMVALAFIDLDTQLLPNDITIPLLWGGLLINLSGGFADIHSAVIGAVVG 204

Query: 66  LIVFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +           MG GD KLL +   W GW    L  +   +++G +  + ++
Sbjct: 205 YLALWSVYWGYKLLTGREGMGYGDFKLLAAIGAWLGWQMLPL-VILSSSLVGSMAGLGLM 263

Query: 122 TVRMITNHIPIF 133
                  H+PI 
Sbjct: 264 LAAKHGRHVPIP 275


>gi|257484000|ref|ZP_05638041.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331013019|gb|EGH93075.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 290

 Score = 39.1 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|117619440|ref|YP_855989.1| leader peptidase PilD [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117560847|gb|ABK37795.1| leader peptidase PilD [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 138

 Score = 39.1 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 21/146 (14%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
               +  +SDLF    PN   +++    L       +   L  L LL+GL         +
Sbjct: 11  LMACWCLVSDLFERRTPNLAVLLLALWALWLLPFNLLSLSLALLTLLLGLFA-------Y 63

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
                G GD KLL      +G +  +   L ++A+ GG+LS+  L    +          
Sbjct: 64  HRGWCGAGDSKLLAVCL--YGASERWPELLLWMALSGGVLSLVCLAYARL---------- 111

Query: 137 VPKSFLMKNKIPYGIAISMGGLISYP 162
             + F     +PYG AI     ++ P
Sbjct: 112 --RPFPGPVTVPYGFAILWAASLTTP 135


>gi|320326052|gb|EFW82109.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330217|gb|EFW86202.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330880436|gb|EGH14585.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 290

 Score = 39.1 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|167581963|ref|ZP_02374837.1| probable CpaA2 pilus assembly protein , putative [Burkholderia
           thailandensis TXDOH]
          Length = 122

 Score = 39.1 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++  + L   AL+DL +  +      ++   + + A          A H  +G I F   
Sbjct: 9   IVASWTLASLALADLRTRRLATFAIALVGALYGVQALAGAPGDGGFAPHAAIGAIAFAFG 68

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPS 101
              F    + GGDVKL     +W G   +
Sbjct: 69  AAMFRIGWIAGGDVKLAAVVFLWAGPAHA 97


>gi|313200293|ref|YP_004038951.1| prepilin peptidase [Methylovorus sp. MP688]
 gi|312439609|gb|ADQ83715.1| Prepilin peptidase [Methylovorus sp. MP688]
          Length = 291

 Score = 39.1 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 21/153 (13%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIIC 72
           +  F L+     DL + ++P+ +++ +L   LL     G  D          G ++    
Sbjct: 142 LFVFALIALTFIDLDTQLLPDDITLPLLWLGLLVNLNGGFTDLSSAVGGAAAGYLILWSI 201

Query: 73  FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           +  F        MG GD KLL +   WFGW     + +   ++ G ++ + ++       
Sbjct: 202 YWLFKLITGKEGMGYGDFKLLAAIGAWFGW-QMLPAVILLSSLAGSVIGIGLILFARHGR 260

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
             P               IP+G  +++GG+ + 
Sbjct: 261 STP---------------IPFGPYLALGGIAAL 278


>gi|158320666|ref|YP_001513173.1| peptidase A24A domain-containing protein [Alkaliphilus oremlandii
           OhILAs]
 gi|158140865|gb|ABW19177.1| peptidase A24A domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 252

 Score = 39.1 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 7/126 (5%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSI---VMLGSFLLTAFLLGMDYELIALHLLVGLI-- 67
           ++    +V  AL DL   +IP+ + +   ++   + + A++L M+   I   +   ++  
Sbjct: 101 ILFSILMV-VALIDLKHMIIPDVLILCIFILSILYKIAAYVLWMEPFNIVQSIGGLILSG 159

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
           +F +   F +   MG GDV L++S     G    FL+ +F   ++G I+SVF+L  ++  
Sbjct: 160 LFFVLIIFLSKGGMGEGDVTLISSLGFILGIKDIFLT-IFLSFVVGAIISVFLLITKIKG 218

Query: 128 NHIPIF 133
              PI 
Sbjct: 219 RKDPIP 224


>gi|28868144|ref|NP_790763.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28851381|gb|AAO54458.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331018825|gb|EGH98881.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 290

 Score = 39.1 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLSDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|148545923|ref|YP_001266025.1| prepilin peptidase [Pseudomonas putida F1]
 gi|148509981|gb|ABQ76841.1| Prepilin peptidase [Pseudomonas putida F1]
          Length = 288

 Score = 39.1 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65
           V + + L   +CL+  +L D    ++P+ + +  M    ++ AF + +         + G
Sbjct: 129 VEALLALPLTWCLLALSLIDADHQLLPDVLVLPTMWLGLIVNAFGIHVPLADALWGAVAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KL+     W GW    L+ L   +++G ++ + +L
Sbjct: 189 YLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLL-SSVVGALVGLCLL 247

Query: 122 TVRMITNHIPIF 133
             R       I 
Sbjct: 248 RFRRHALGTAIP 259


>gi|304415278|ref|ZP_07395973.1| type IV prepilin peptidase [Candidatus Regiella insecticola LSR1]
 gi|304282868|gb|EFL91336.1| type IV prepilin peptidase [Candidatus Regiella insecticola LSR1]
          Length = 271

 Score = 39.1 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 19/122 (15%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           LI  + L+  A  DL   ++P+ +++ +L   LL      ++ E +   L   +I   + 
Sbjct: 124 LILAWSLIVLAFIDLDKRILPDCITLPLLWCGLL------VNVEGMFTSLSSAVIGATVG 177

Query: 73  FCFFAFNI-----------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
           + FF               MG GD KL+ +   WFGW    + FL F++   GI+    L
Sbjct: 178 YLFFWLTYWLIKKLTGKEGMGYGDFKLMAALGAWFGWE--IIPFLTFISSFLGIIGYISL 235

Query: 122 TV 123
            +
Sbjct: 236 RI 237


>gi|226310154|ref|YP_002770048.1| hypothetical protein BBR47_05670 [Brevibacillus brevis NBRC 100599]
 gi|226093102|dbj|BAH41544.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
          Length = 151

 Score = 39.1 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 40/97 (41%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
           F +V A  +DL S +I + +++  +  FLL    L  +  L      + L    +     
Sbjct: 13  FVMVVAMYTDLRSRLIYDWLTLPGIVYFLLVHACLHPEKWLSYAMGAIVLGGISLLMAVI 72

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
           +   MGGGD+KLL       GW    +  +    + G
Sbjct: 73  SKGQMGGGDIKLLALVGAAVGWQAGLVVLMLTYLLAG 109


>gi|160893684|ref|ZP_02074468.1| hypothetical protein CLOL250_01238 [Clostridium sp. L2-50]
 gi|156864669|gb|EDO58100.1| hypothetical protein CLOL250_01238 [Clostridium sp. L2-50]
          Length = 152

 Score = 39.1 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%)

Query: 5   KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
            ++ +   ++    L+  +  DL   +IP+R    +     L             L  L 
Sbjct: 6   SLLQAVQAVLFFSLLIAVSAWDLRYRIIPDRFQAGIALLSFLNFA------PGQLLGALG 59

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
            +   I+         MGGGD+KL  +T +  G   S 
Sbjct: 60  AVPYLIVALFCKREGGMGGGDIKLAGATGLVLGLPASL 97


>gi|163751741|ref|ZP_02158959.1| hypothetical protein KT99_12229 [Shewanella benthica KT99]
 gi|161328393|gb|EDP99552.1| hypothetical protein KT99_12229 [Shewanella benthica KT99]
          Length = 191

 Score = 39.1 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 18/155 (11%)

Query: 20  VFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           + A + DL+   IPN++ ++ +   F + A+   +  +   + L    + FII F  F  
Sbjct: 18  IAAIVMDLYKEKIPNKLCLLAIFCGFAINAYYAQL--QGALMALFGFALAFIILFPTFIL 75

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV-------------RM 125
            I+G GD+KL+       G  P  L +     I+ G  +  +L +             R 
Sbjct: 76  RILGAGDIKLMMGIGALMG--PQLLVWSLAYGIVAGAGTSLLLIIWKTGFTGMAMTLKRY 133

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                               ++PY  A+++G L +
Sbjct: 134 WDCFYLRCYFKPEAGEAAGLRVPYAPALALGWLWA 168


>gi|301063974|ref|ZP_07204439.1| putative type IV prepilin leader peptidase [delta proteobacterium
           NaphS2]
 gi|300441885|gb|EFK06185.1| putative type IV prepilin leader peptidase [delta proteobacterium
           NaphS2]
          Length = 258

 Score = 39.1 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65
           +   +F++    L+     D    ++P+ +++  +L  +L++ F  G+ +    + L  G
Sbjct: 100 LQYLLFMLFSGTLLILGFIDFDHKILPDVLTLPGILAGWLVSFFPGGISWVDSLIGLAAG 159

Query: 66  LIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
                +    +        +GGGD+KLL     W GW    L  +   ++ G ++    +
Sbjct: 160 GGSLYLVAAVYERITGREGLGGGDIKLLAMIGAWLGWMSLPL-IVLMSSLSGAVIGSAFI 218

Query: 122 T 122
            
Sbjct: 219 L 219


>gi|229004160|ref|ZP_04161961.1| Peptidase A24A domain protein [Bacillus mycoides Rock1-4]
 gi|228757021|gb|EEM06265.1| Peptidase A24A domain protein [Bacillus mycoides Rock1-4]
          Length = 260

 Score = 39.1 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVGLIVFIICFCFF 76
            L+   ++DLF  +IP+ +       F++   F+  + +    +      IV  +    F
Sbjct: 127 LLIIITMTDLFYMLIPDVILFSFACLFVIEHIFISLVPWWEGLIGGGTIFIVLYLVQILF 186

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
             N +GGGDVKLL+      G    F+      ++      + +L  R+ +     FG F
Sbjct: 187 -PNGLGGGDVKLLSLLGFIIGAKAIFIVLCCASSLSLCFFGIGMLLKRITSRQPLPFGPF 245

Query: 137 VP 138
           + 
Sbjct: 246 IA 247


>gi|213970188|ref|ZP_03398319.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tomato T1]
 gi|301385924|ref|ZP_07234342.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063131|ref|ZP_07254672.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tomato K40]
 gi|302134157|ref|ZP_07260147.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213925069|gb|EEB58633.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           tomato T1]
          Length = 290

 Score = 39.1 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLSDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|145588372|ref|YP_001154969.1| peptidase A24A, prepilin type IV [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046778|gb|ABP33405.1| peptidase A24A, prepilin type IV [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 166

 Score = 39.1 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYELIALHLLVGLIVFI 70
           +    L++ A  D  +  + +RV++ +L   L+         + +       ++G   F 
Sbjct: 13  LFILALIYLAYQDARTFRLSDRVTLPLLVLGLVFNSFDSTRLVSFPDALTGAILGYSFFW 72

Query: 71  ICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
           +    +      N +G GD KLL +   W G+  +    +   A+ G +     L V+  
Sbjct: 73  LMNFLYRLIKKQNGIGMGDAKLLAALGAWLGFN-ALPDVILIAALSGTLGGFIWLKVQDQ 131

Query: 127 TNHIPIF 133
            +  P  
Sbjct: 132 RHRAPFP 138


>gi|292670460|ref|ZP_06603886.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292647870|gb|EFF65842.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 188

 Score = 38.7 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 1/125 (0%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           I    L++ +  DL   M+ + +++      L+ + + G+     A+       V   C 
Sbjct: 44  IFAAALLWLSFLDLRDGMLYDCITLPFAALGLVFS-MAGVGSVTDAMIGGTLCGVLFYCL 102

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
              A   +GGGDVKL     +W GW  + ++      + G   +V ++T R   +    F
Sbjct: 103 YIAARGGLGGGDVKLAAGLGLWLGWEAAVIALWIAFMLGGTAAAVLLITGRRKRHDGIPF 162

Query: 134 GMFVP 138
           G F+ 
Sbjct: 163 GPFLA 167


>gi|95928764|ref|ZP_01311510.1| Prepilin peptidase [Desulfuromonas acetoxidans DSM 684]
 gi|95135109|gb|EAT16762.1| Prepilin peptidase [Desulfuromonas acetoxidans DSM 684]
          Length = 264

 Score = 38.7 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 6/132 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65
           + + V  +    LV     D    +IP+ +++  +   F+ +  +  + ++   + +LVG
Sbjct: 105 MVTLVLFLFVSALVVVTFIDYDHQIIPDVITLPGIPIGFICSFAIPWVSWKDSLIGVLVG 164

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
                     + F      MGGGD+KLL     + GW    L  +F  ++LG ++ + ++
Sbjct: 165 GGSLFAVAFLYEFFTKKEGMGGGDIKLLAMIGAFCGWR-VILPVVFLSSLLGSLVGIPVM 223

Query: 122 TVRMITNHIPIF 133
            ++   + + + 
Sbjct: 224 LLQKGDSKMALP 235


>gi|330966321|gb|EGH66581.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 290

 Score = 38.7 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLMGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|289626921|ref|ZP_06459875.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330867359|gb|EGH02068.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 290

 Score = 38.7 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QTAAMLVLSWGLLTMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|229132199|ref|ZP_04261056.1| Peptidase A24A domain protein [Bacillus cereus BDRD-ST196]
 gi|228651247|gb|EEL07225.1| Peptidase A24A domain protein [Bacillus cereus BDRD-ST196]
          Length = 249

 Score = 38.7 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++DL   +IPNR+ I      +L    + +     ++     + + + C        +GG
Sbjct: 122 VTDLVYMLIPNRILIWFALLLILECIFVPLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KLL+      G    F+                I+  RM                 M
Sbjct: 182 GDIKLLSLLGFIVGLKGIFMILFLASCFSLCFFGAGIVLKRM----------------KM 225

Query: 144 KNKIPYGIAISMGGL 158
           +++IP+G  IS+G +
Sbjct: 226 RSQIPFGPFISLGAI 240


>gi|228996509|ref|ZP_04156148.1| Peptidase A24A domain protein [Bacillus mycoides Rock3-17]
 gi|228763141|gb|EEM12049.1| Peptidase A24A domain protein [Bacillus mycoides Rock3-17]
          Length = 260

 Score = 38.7 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVGLIVFIICFCFF 76
            L+   ++DLF  +IP+ +       F++   F+  + +    +      IV  +    F
Sbjct: 127 LLIIITMTDLFYMLIPDVILFSFACLFVIEHIFISLVPWWEGLIGGGTIFIVLYLVQILF 186

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
             N +GGGDVKLL+      G    F+      ++      + +L  R+ +     FG F
Sbjct: 187 -PNGLGGGDVKLLSLLGFIIGAKAIFIVLCCASSLSLCFFGIGMLLKRITSRQPLPFGPF 245

Query: 137 VP 138
           + 
Sbjct: 246 IA 247


>gi|153956474|ref|YP_001397239.1| hypothetical protein CKL_3891 [Clostridium kluyveri DSM 555]
 gi|219856778|ref|YP_002473900.1| hypothetical protein CKR_3435 [Clostridium kluyveri NBRC 12016]
 gi|146349332|gb|EDK35868.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219570502|dbj|BAH08486.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 139

 Score = 38.7 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 14/115 (12%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
               L  A+++DL   ++PN +  V+    +       +   LIAL  L+  + F     
Sbjct: 13  FIALLCAASVTDLTKRIVPNWICAVIAVLSIPGFAPEKLPGILIALPFLLAAVFF----- 67

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
                 MGGGD+KL+ +  +  G     L      A+ G +L +  + +  I   
Sbjct: 68  ----GGMGGGDIKLMAACGLVLGLPKGLL-----AAMAGLVLLLIYVVIYRIVCR 113


>gi|330977426|gb|EGH77373.1| prepilin peptidase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 290

 Score = 38.7 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFSSLNNALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|293115690|ref|ZP_06604570.1| type IV prepilin peptidase [Butyrivibrio crossotus DSM 2876]
 gi|292808812|gb|EFF68017.1| type IV prepilin peptidase [Butyrivibrio crossotus DSM 2876]
          Length = 209

 Score = 38.7 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           V S  + +    L+  ++ D  +  IP  ++I +L   ++       ++    + ++   
Sbjct: 58  VTSICYALSVSMLIALSVIDWRTYEIPFGLNIAILVFGIINMAFNYKNFLYYLIGMVCVS 117

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
              ++ +       +GGGD+KL+ +  +  GW    L+ +    I+G ++ + ++
Sbjct: 118 GFLLLLYLITKGRGIGGGDIKLMAAAGLLLGWKHIILALILGC-IIGSVIHIILM 171


>gi|239908140|ref|YP_002954881.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239798006|dbj|BAH76995.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 165

 Score = 38.7 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 29  SAMIPNRVSIVMLGSFL-LTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVK 87
           +  IPNR++       L + A+  G+    +   LL      +I    +AF ++G GDVK
Sbjct: 28  TRRIPNRITFPAAVLILGIQAWFYGLS--GLGDSLLGLAGALLIFLIPYAFRVLGAGDVK 85

Query: 88  LLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
           LL       G + + +S   F ++ GG+     L    +++     G  +
Sbjct: 86  LLAVVGAGLGPS-ALVSLALFTSLAGGVQIALWLAAMRLSHGRIQPGKRL 134


>gi|257453561|ref|ZP_05618851.1| type IV pilus prepilin peptidase PilD [Enhydrobacter aerosaccus
           SK60]
 gi|257449019|gb|EEV23972.1| type IV pilus prepilin peptidase PilD [Enhydrobacter aerosaccus
           SK60]
          Length = 291

 Score = 38.7 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGL 66
            +   L+  + LV     D  + ++P+R+++ + G    + AF L +         + G 
Sbjct: 136 QALAGLVLTWTLVALTGIDFDTQLLPDRLTLPLAGLGLFVNAFGLFVSPTAAIFGYVFGF 195

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +   I +  F      + MG GD KLL +   W G  P  L  +  ++   G +   IL 
Sbjct: 196 LCLWIVYQLFLLITGKHGMGHGDFKLLAALGAWLG--PLMLPLIVLLSAFVGSVVGVILM 253

Query: 123 VRMITNHIPIFG 134
            R   +    FG
Sbjct: 254 KRSGESKPFAFG 265


>gi|294139026|ref|YP_003555004.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Shewanella violacea DSS12]
 gi|293325495|dbj|BAJ00226.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Shewanella violacea DSS12]
          Length = 305

 Score = 38.7 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 23/162 (14%)

Query: 5   KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
             +  A   +  F L+     DL   ++P+++++ +L   L+            AL +  
Sbjct: 144 PTLEFAFATVLTFVLIALTGIDLDEMLLPDQLTLPLLWLGLIINLDSTFASPSDAL-IGA 202

Query: 65  GLIVFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
                 +   F+AF +      MG GD KLL     WFGW       +   +I+G ++ +
Sbjct: 203 AAGYLSLWSVFWAFKLLTGKDGMGYGDFKLLAVFGAWFGW-QLLPQIILLSSIVGAVVGI 261

Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
            ++               + K     N IP+G  I++ G I+
Sbjct: 262 MLI---------------ISKRLNKGNPIPFGPYIALAGWIA 288


>gi|270262336|ref|ZP_06190608.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
           [Serratia odorifera 4Rx13]
 gi|270044212|gb|EFA17304.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
           [Serratia odorifera 4Rx13]
          Length = 235

 Score = 38.7 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 8/135 (5%)

Query: 5   KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLL 63
            ++   V L     L+  A  D    ++P+R+++ +L    L+                +
Sbjct: 65  PLLHRVVLLPVAAVLIALAFIDWRHRLLPDRLTLPLLWAGLLVNQQGYFTSLAEAVSGAV 124

Query: 64  VGLIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
           VG +   +    +        +G GD KLL +   W GW    L  L   A   G+ +V 
Sbjct: 125 VGYLSLWLLNAAYRRRHQRDGIGQGDFKLLAALGAWVGWP--ALPMLVTGAAATGLCAVA 182

Query: 120 IL-TVRMITNHIPIF 133
           I   +R      P+ 
Sbjct: 183 IACLMRKPGWQTPLP 197


>gi|104779908|ref|YP_606406.1| prepilin peptidase; typeII/IV secretion [Pseudomonas entomophila
           L48]
 gi|95108895|emb|CAK13591.1| putative prepilin peptidase; typeII/IV secretion [Pseudomonas
           entomophila L48]
          Length = 156

 Score = 38.7 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 7/121 (5%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELIALHLLVGLIVFI 70
           ++    L      D+    I N +++ + G  L   F  G  +     +       IV +
Sbjct: 4   IVLLMWLALCTEQDVRERQISNTLTLGVAGCALAWLFATGHSWIGADASEAGWALAIVML 63

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           +    +     G GDVKL+ + A+          ++    I  GI  +  +  R     +
Sbjct: 64  LTLPGYMLGRFGAGDVKLMGALALATSPQ-----YVLGTFIGAGITVLAWMFGRRRLWTL 118

Query: 131 P 131
            
Sbjct: 119 L 119


>gi|311695302|gb|ADP98175.1| type IV pilus prepilin peptidase PilD [marine bacterium HP15]
          Length = 291

 Score = 38.7 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 58/143 (40%), Gaps = 21/143 (14%)

Query: 24  LSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF---- 78
           + D  + ++P+ +++ ++    +L  F +  D+       +VG +     +  F      
Sbjct: 149 VIDFDTQLLPDSITLPLMWLGLVLNYFGVLTDFNSAFWGAVVGYLALWSVYWLFKLVTGK 208

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
             MG GD KLL +   W GW     + +   +++G ++ + ++  +     +P       
Sbjct: 209 EGMGHGDFKLLAALGAWLGW-QLLPAVILLSSVVGAVVGIGLMVFKQHGREVP------- 260

Query: 139 KSFLMKNKIPYGIAISMGGLISY 161
                   IP+G  ++  GL+  
Sbjct: 261 --------IPFGPYLATAGLLCL 275


>gi|289650991|ref|ZP_06482334.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 290

 Score = 38.7 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QTAAMLVLSWGLLTMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|288930466|ref|YP_003434526.1| peptidase A24B, FlaK domain protein [Ferroglobus placidus DSM
           10642]
 gi|288892714|gb|ADC64251.1| Peptidase A24B, FlaK domain protein [Ferroglobus placidus DSM
           10642]
          Length = 235

 Score = 38.7 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 7/148 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           ++ A FLI     + A+  DL   ++PN+   VML +      +  + Y        +  
Sbjct: 5   IYVAKFLICLAIFLKASQLDLKERIVPNKYWKVMLLAVTPFNLVEFLSYSTFDFVFAIVQ 64

Query: 67  IVFI--ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           I F   + +  +     GG D K L + +  F   P    F     I G   +   L   
Sbjct: 65  IAFASSLAYLLYRIGAYGGADAKALMALSYAFPRYPEVGIFPLL--IKGFSFAFSTLANA 122

Query: 125 MITNHIPIFGMFVPKSF---LMKNKIPY 149
           +I        MF+       + K +IPY
Sbjct: 123 VIAAPFLAIYMFLSNLIKGNVSKGEIPY 150


>gi|313633116|gb|EFS00012.1| type IV leader peptidase family protein [Listeria seeligeri FSL
           N1-067]
          Length = 236

 Score = 38.7 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L F  ++D+    IPN + I+   + L    L       + + + V +I +++ F  F  
Sbjct: 107 LAFFFITDILYMYIPNSIIILFTITLLFVYCLFDQPIVNLIISVGVSMIFYMLFFLIFRK 166

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
             +G GD+KL    + + G+   +  F 
Sbjct: 167 G-IGLGDIKLFIILSSFLGFKTGYYIFF 193


>gi|126176111|ref|YP_001052260.1| prepilin peptidase [Shewanella baltica OS155]
 gi|125999316|gb|ABN63391.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Shewanella baltica OS155]
          Length = 304

 Score = 38.7 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           I  F LV     DL   ++P+++++ +L    ++             +    G +     
Sbjct: 154 ILTFVLVALTAIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIMGAAAGYLSLWSI 213

Query: 73  FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           F  F        MG GD KLL     W GW    L  +   +++G ++ + ++       
Sbjct: 214 FWLFKILTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGAVVGITMI------- 265

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                   V K     N IP+G  I+  G I+ 
Sbjct: 266 --------VSKRLKQGNPIPFGPYIAAAGWIAL 290


>gi|302875179|ref|YP_003843812.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B]
 gi|307688856|ref|ZP_07631302.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B]
 gi|302578036|gb|ADL52048.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B]
          Length = 159

 Score = 38.7 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    L++ +LSD+   +IP++V I++L   L+      ++ +   L L +  I FII  
Sbjct: 28  LYAVILLYVSLSDIKIRIIPDKVHIMILLVSLIN-----INLKDSLLGLFLVSIPFIIT- 81

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
              + N +GGGD+KL+ ++    G    FL+ +  +A
Sbjct: 82  ALISENGIGGGDIKLMGASGFLLGVKGGFLASIIGLA 118


>gi|313637693|gb|EFS03069.1| type IV leader peptidase family protein [Listeria seeligeri FSL
           S4-171]
          Length = 236

 Score = 38.7 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L F  ++D+    IPN + I+   + L    L       + + + V +I +++ F  F  
Sbjct: 107 LAFFFITDILYMYIPNSIIILFTITLLFVYCLFDQPIVNLIISVGVSMIFYMLFFLIFRK 166

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
             +G GD+KL    + + G+   +  F 
Sbjct: 167 G-IGLGDIKLFIILSSFLGFKTGYYIFF 193


>gi|325294958|ref|YP_004281472.1| Prepilin peptidase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065406|gb|ADY73413.1| Prepilin peptidase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 251

 Score = 38.7 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 26  DLFSAMIPNRVS---IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII--CFCFFAFNI 80
           DL + ++P ++    ++    F +    + +   ++      G+I+FII   +       
Sbjct: 114 DLKTMLVPVKLCYFAMIAGILFSIFVPSISLKDSILGASFGAGIILFIIETYYILKGKEG 173

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
           MG GD  ++     + GW    L+ +F  +++G +  +  + +R   + + +  +  
Sbjct: 174 MGYGDANVMAVIGAFLGWEKVLLT-IFLASLIGAVWGIIFMILRGKNSQLALPFVPF 229


>gi|227819324|ref|YP_002823295.1| CpaA pilus assembly protein [Sinorhizobium fredii NGR234]
 gi|227338323|gb|ACP22542.1| CpaA pilus assembly protein [Sinorhizobium fredii NGR234]
          Length = 185

 Score = 38.7 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 24/173 (13%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL---- 63
            + + +     L++AA SD     IPN V + ++  + L A L  +  E     L     
Sbjct: 5   INILIVATVLLLLYAAWSDFRLWKIPNSVVLALMAVYALGAALKLLTAEQAGGALGELMA 64

Query: 64  ------------------VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
                              GL++F + F  ++F + G GD KL     V+ GW       
Sbjct: 65  DDLGAALFSAHGLAGDVGAGLLLFALGFGLWSFRLFGAGDAKLFLPIGVFIGWNGMLPFA 124

Query: 106 LFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
           +F   ++GGI ++ IL + M             +      K+PYG+ +    L
Sbjct: 125 VFL--LIGGIAALLILKLPMPLQLAHFSVAMRLEEIRATRKVPYGVIMVAATL 175


>gi|260462615|ref|ZP_05810821.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum
           WSM2075]
 gi|259031521|gb|EEW32791.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum
           WSM2075]
          Length = 174

 Score = 38.7 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 9/155 (5%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVML---GSFLLTAFLLGMDYELIALHLLVGL 66
            + ++    L   A  D  +  I NR  +++L      LL   L    +  + L  +  L
Sbjct: 8   LLNVLAIPLLARIAWLDFKTQKITNRDVLLLLCLGAGRLLLLSLQSGSWWDMGLSAIAAL 67

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
           ++ +  F F+    +G GDVKL+         +      L   ++L  + ++  +TV   
Sbjct: 68  LLLVAFFPFWVLRKVGAGDVKLMAVMPFLTSGSG-----LVLFSMLLLVFALITVTVVKA 122

Query: 127 TNHIPIFGMFVPKSFLMKNK-IPYGIAISMGGLIS 160
              +P     +    + +   +P+G+ IS+  + +
Sbjct: 123 PFMLPEGAFRLYIQHMDRKGVVPFGVPISVAAICT 157


>gi|116052329|ref|YP_792640.1| hypothetical protein PA14_55800 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893387|ref|YP_002442256.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa LESB58]
 gi|254239035|ref|ZP_04932358.1| hypothetical protein PACG_05212 [Pseudomonas aeruginosa C3719]
 gi|254244894|ref|ZP_04938216.1| hypothetical protein PA2G_05767 [Pseudomonas aeruginosa 2192]
 gi|296390994|ref|ZP_06880469.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa PAb1]
 gi|115587550|gb|ABJ13565.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170966|gb|EAZ56477.1| hypothetical protein PACG_05212 [Pseudomonas aeruginosa C3719]
 gi|126198272|gb|EAZ62335.1| hypothetical protein PA2G_05767 [Pseudomonas aeruginosa 2192]
 gi|218773615|emb|CAW29429.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa LESB58]
          Length = 160

 Score = 38.7 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L            D+    + N + +       +  ++         +++ +  +   +C
Sbjct: 4   LALALWASVCGYQDIKRLRVSNWLILGGFLISFVYLYVKESSLTGATVNMAMTALFIGVC 63

Query: 73  FCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
                +    +G  DVK L +  +         S  F   +   +  +  L  R +    
Sbjct: 64  LSLPGYLLGRLGAADVKYLAALGLASDPLTVLYSLAFGCLLCIALFILVKLFKRSVEKSA 123

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
               + + ++       P+  A+S G L 
Sbjct: 124 MNEEVRLRRAPSKNKSFPFIFAMSAGLLA 152


>gi|326792827|ref|YP_004310648.1| peptidase A24A prepilin type IV [Clostridium lentocellum DSM 5427]
 gi|326543591|gb|ADZ85450.1| peptidase A24A prepilin type IV [Clostridium lentocellum DSM 5427]
          Length = 138

 Score = 38.7 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 7/130 (5%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVS-IVMLGSFLLTAFLLGMDYELIALHLLV 64
           M+   + LI    L++ + +D     IPN+   ++++  F    F   + +  I L    
Sbjct: 1   MIKYIILLIF---LLYFSYTDYCYRRIPNKAIFLLLIIGFCFLPFSHPISHYCIGLFFPS 57

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            ++ F+          +G GD+KLL  T ++ G+  + L F+    +     +V+    +
Sbjct: 58  FILFFL---NVLYSKFIGLGDIKLLICTGLFLGFKINTLLFVLTCTLGLIFCAVYTFFSK 114

Query: 125 MITNHIPIFG 134
                +P+  
Sbjct: 115 KRLYSLPLAP 124


>gi|92114298|ref|YP_574226.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Chromohalobacter salexigens DSM 3043]
 gi|91797388|gb|ABE59527.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Chromohalobacter salexigens DSM 3043]
          Length = 280

 Score = 38.7 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 10/122 (8%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L+  A+ DL + ++P+ +++ +L + L+   +    +   A+   +   + +  F ++
Sbjct: 135 LTLLVVAVIDLRTQLLPDIITLPLLWAGLIYQLVFQPYWLSNAVIGALAGYLLLWGF-YW 193

Query: 77  AFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFV---AILGGILSVFILTVRMIT 127
            F        MG GD KLL +   WFGWT   +  +      A++GG+L +    +R + 
Sbjct: 194 LFKWITGKEGMGYGDFKLLAALGAWFGWTMLPILLILSAGLGAVIGGLLQLTHPRLRGMP 253

Query: 128 NH 129
             
Sbjct: 254 LP 255


>gi|258515688|ref|YP_003191910.1| peptidase A24A prepilin type IV [Desulfotomaculum acetoxidans DSM
          771]
 gi|257779393|gb|ACV63287.1| peptidase A24A prepilin type IV [Desulfotomaculum acetoxidans DSM
          771]
          Length = 177

 Score = 38.7 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
           L   + +DL   +I N VS  ++ + L+     G  Y    L ++ G ++F++ +    
Sbjct: 18 ALAIGSYTDLKYRIIKNNVSFGLIVAGLVYNIFFGYGYIFSLLGIVSGFVLFLLPYII-- 75

Query: 78 FNIMGGGDVKLLTSTAVWFGWT 99
             MG GDVKL+       GW 
Sbjct: 76 -TGMGAGDVKLIMGVGAVLGWQ 96


>gi|218288168|ref|ZP_03492467.1| peptidase A24A domain protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241527|gb|EED08700.1| peptidase A24A domain protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 261

 Score = 38.3 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 1/123 (0%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           AV+      L  A   DL S ++PN +++     F L + L G+   L+A        V 
Sbjct: 108 AVWWAFWLYLASAVACDLTSLILPNVLTLPAGVIFFLGSGLTGIRTWLMAAAGAAVGYVI 167

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           +    F     MG GD KL        G     ++F+   AI G I ++ +     +   
Sbjct: 168 VAAIHFVTGGKMGMGDAKLNLGIGAMLGPGYMVMAFVL-AAIYGVIAALPLRIAGRVKPQ 226

Query: 130 IPI 132
            PI
Sbjct: 227 QPI 229


>gi|159028570|emb|CAO87378.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 269

 Score = 38.3 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 44/146 (30%), Gaps = 27/146 (18%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF------- 78
           D  +  +PN ++   L   ++   LLG       ++L   +   ++    F         
Sbjct: 121 DFDTMTLPNSLTQSGLVLGIVFQTLLGWQNNQSVVYLFSAIASAVLGVWLFDLIRWGGSF 180

Query: 79  ----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
                 MGGGD KL      W GW    ++                              
Sbjct: 181 ALGQQAMGGGDAKLAAMIGAWLGWQALLVTAFLAC----------------AIGAGIGIM 224

Query: 135 MFVPKSFLMKNKIPYGIAISMGGLIS 160
                    K  IP+G  +++G L+S
Sbjct: 225 GIFLGKMGKKQAIPFGPFLALGALMS 250


>gi|330890705|gb|EGH23366.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 290

 Score = 38.3 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QTAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + + +PI 
Sbjct: 250 VRRVESSMPIP 260


>gi|309778075|ref|ZP_07673014.1| type IV prepilin peptidase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914169|gb|EFP59970.1| type IV prepilin peptidase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 255

 Score = 38.3 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 13  LIPPFCLVFAALS--DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           ++    ++   ++  D  +  IPN + I +L   +       +  E+  +   +G  +  
Sbjct: 105 VVFAIFMILLTITMIDFDTMTIPNGLIIALL---VPVGMFTALHTEMGIVTRCIGFFIVS 161

Query: 71  ICFCFFAF---NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +          +  GGGD+KL+       GW  + L+F   V I+GG  ++ +L 
Sbjct: 162 LPMYLLTVLIPDCFGGGDIKLIAVAGFLLGWKLTLLAFFISV-IIGGCYAICLLL 215


>gi|13475424|ref|NP_106988.1| type IV prepilin peptidase [Mesorhizobium loti MAFF303099]
 gi|14026176|dbj|BAB52774.1| type IV prepilin peptidase [Mesorhizobium loti MAFF303099]
          Length = 176

 Score = 38.3 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 9/145 (6%)

Query: 18  CLVFAALSDLFSAMIPNR---VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
            L   A  D  +  I NR   + + +    LL   L    +  + L  +  L++F+  F 
Sbjct: 16  LLARIAWLDFTTQKIANRDALLLLCLGAGSLLLLSLQSGSWWDMGLSAIAALVLFVGLFP 75

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
           F+    +G GDVKL+       G        L   +IL  + ++    V      +P   
Sbjct: 76  FWVLRKVGAGDVKLMAVVPFLVGGND-----LVGFSILLLLFALATAVVVKNPFLLPQGA 130

Query: 135 MFVPKSFLMKNK-IPYGIAISMGGL 158
             V    L +   +P+G+ IS+  +
Sbjct: 131 FRVYVQHLDRKGVVPFGVPISVASI 155


>gi|330973677|gb|EGH73743.1| prepilin peptidase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 290

 Score = 38.3 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QAAAMLVLGWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|303241417|ref|ZP_07327920.1| peptidase A24A prepilin type IV [Acetivibrio cellulolyticus CD2]
 gi|302591026|gb|EFL60771.1| peptidase A24A prepilin type IV [Acetivibrio cellulolyticus CD2]
          Length = 151

 Score = 38.3 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL-IVFIIC 72
           +    L+FAAL DL    IP+ + +++L +     FL    +  +   +  GL  V    
Sbjct: 10  LFVVLLIFAALWDLRKREIPDTIVVLILST----GFLAIQPWNAVVGFITTGLPYVLAAV 65

Query: 73  FCFFAFNI-MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
           F        MGGGD+KL+ +     G T   L  +  + + 
Sbjct: 66  FIKKDSGFSMGGGDIKLMAACGFVLGITFGTLHSIISLTMA 106


>gi|153854853|ref|ZP_01996076.1| hypothetical protein DORLON_02082 [Dorea longicatena DSM 13814]
 gi|149752555|gb|EDM62486.1| hypothetical protein DORLON_02082 [Dorea longicatena DSM 13814]
          Length = 178

 Score = 38.3 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 36/114 (31%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +     L     L   AL+D  +  IP R  I +L        L G       +     +
Sbjct: 26  LNGIRLLCYLGILCRVALTDHSTRKIPGRYHIYILLIAAADMVLTGNSDLYNRIPGAAAV 85

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
              ++          GGGD+K +  +    G      S    + + GG   + +
Sbjct: 86  AGPMLVLSILIPGAFGGGDIKFMAVSGFLLGKEKIICSMACAIMLAGGYCLIML 139


>gi|15599491|ref|NP_252985.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa PAO1]
 gi|9950516|gb|AAG07683.1|AE004845_9 Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa PAO1]
          Length = 160

 Score = 38.3 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 44/149 (29%), Gaps = 2/149 (1%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L            D+    + N + +       +  ++         +++ +  +   +C
Sbjct: 4   LALALWASVCGYQDIKRLRVSNWLILGGFLISFVYLYVKESSLTGATVNMAMTALFIGVC 63

Query: 73  FCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
                +    +G  DVK L +  +         S  F   +   +  +  L  R +    
Sbjct: 64  LSLPGYLLGRLGAADVKYLAALGLASDPLTVLYSLAFGCLLCIALFILVKLFKRSVEKSA 123

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
               + + ++       P+  A+  G L 
Sbjct: 124 MNEEVRLRRAPSKNKSFPFIFAMGAGLLA 152


>gi|289434830|ref|YP_003464702.1| leader peptidase (prepilin peptidase) / N-methyltransferase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171074|emb|CBH27616.1| leader peptidase (prepilin peptidase) / N-methyltransferase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 236

 Score = 38.3 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L F  ++D+    IPN + I+   + L    L       + + + V +I +++ F  F  
Sbjct: 107 LAFFFITDILYMYIPNSIIILFTITLLFVYCLFDQPIVNLIISVSVSMIFYMLFFLIFRK 166

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
             +G GD+KL    + + G+   +  F 
Sbjct: 167 G-IGLGDIKLFIILSSFLGFKTGYYIFF 193


>gi|56477899|ref|YP_159488.1| type IV fimbrial biogenesis protein, prepilin cysteine protease
           (C20) PilD [Aromatoleum aromaticum EbN1]
 gi|56313942|emb|CAI08587.1| type IV fimbrial biogenesis protein,prepilin cysteine protease
           (C20) PilD [Aromatoleum aromaticum EbN1]
          Length = 283

 Score = 38.3 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 64/160 (40%), Gaps = 21/160 (13%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVG 65
           + +A  ++  + +V  A  DL + ++P+ +++ +L   LL              +  + G
Sbjct: 126 LAAAGAMLFLWTMVALAFIDLDTQLLPDSLTLPLLWLGLLFNLDGTYSELPQAVVGAIAG 185

Query: 66  LIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW    L+ + F +++G +  + ++
Sbjct: 186 YLALWAVYWLFKLATGKEGMGYGDFKLLAAIGAWLGWQMLPLT-ILFSSLVGAVTGLGLI 244

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                   +P               IP+G  ++  G+++ 
Sbjct: 245 VFARHGRDVP---------------IPFGPYLAAAGVLAL 269


>gi|323525743|ref|YP_004227896.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001]
 gi|323382745|gb|ADX54836.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001]
          Length = 160

 Score = 38.3 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 2/132 (1%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFIICFCFFAF 78
              A+SD  S  I N + I  L +  L A L +G      A       +  +    FFAF
Sbjct: 5   ACVAISDYRSRRISNALVITGLIAAFLCALLDMGPFGVSAAQAAAGAAVGLVALLPFFAF 64

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
            +MG  DVK+      W G   + +      +++ G+ ++ +L          +      
Sbjct: 65  GVMGAADVKVFAVLGAWCGM-HALIGLWAVASVVAGLHALCVLVATRTRVGALLARRAPT 123

Query: 139 KSFLMKNKIPYG 150
                +   P+ 
Sbjct: 124 FELAGRRATPFA 135


>gi|311107635|ref|YP_003980488.1| type IV leader peptidase family protein 1 [Achromobacter
           xylosoxidans A8]
 gi|310762324|gb|ADP17773.1| type IV leader peptidase family protein 1 [Achromobacter
           xylosoxidans A8]
          Length = 173

 Score = 38.3 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-------DYELIALHLLVG 65
           L+    +V    +DL    +PNR+ +  L   LL      +             L  L G
Sbjct: 10  LLFACWIVALIHADLRYRRVPNRLIVAGLAGQLLWLLAALLAPGWAYPPRWSGWLMALAG 69

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +V ++    +   +MG GD+K +    +  G+ P  ++ L   ++L G+  +  L V  
Sbjct: 70  FLVAVLFLPLWRRRLMGAGDIKAIAVLGLLLGFAPLMVT-LALASVLAGLHGLGYLAVSR 128

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                      V        +IPY   + +    +
Sbjct: 129 -----------VWALSNRARQIPYAAYLGLAAFSA 152


>gi|221068972|ref|ZP_03545077.1| Prepilin peptidase [Comamonas testosteroni KF-1]
 gi|220713995|gb|EED69363.1| Prepilin peptidase [Comamonas testosteroni KF-1]
          Length = 289

 Score = 38.3 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGLIVFIIC 72
               L+  AL D  +  +P+ +++ +L + L+ + L    +  +      + G +   + 
Sbjct: 140 FSAALLTLALIDWDTTFLPDSITVPLLWAGLIASALQWTNVPLQQSLWGAVAGYMSLWLI 199

Query: 73  FCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           F  F        MG GD KL  +   WFGW  + +  +   +++G ++ + +        
Sbjct: 200 FWAFKLATGKEGMGYGDFKLFAALGAWFGW-QALVPIILMASVVGAVIGIML-------- 250

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
                   +         +P+G  ++ GG +S        +   GL
Sbjct: 251 -------KINSQLREGGYVPFGPFLAGGGFVSLIWGPQAVLGFAGL 289


>gi|91783008|ref|YP_558214.1| putative prepilin peptidase transmembrane protein, CpaA like
           [Burkholderia xenovorans LB400]
 gi|91686962|gb|ABE30162.1| Putative prepilin peptidase transmembrane protein, CpaA like
           protein [Burkholderia xenovorans LB400]
          Length = 166

 Score = 38.3 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FII 71
           L+        A+SD     I N + +  L +    A      + +      +G ++    
Sbjct: 8   LLFVAWAAAVAISDCRWRRISNSIVVAGLAAAFGCALFQCGPFGISPARAGIGALIGLAA 67

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
              FF   +MG  DVK+      W G   +        ++  G  ++++L          
Sbjct: 68  LLPFFVLGVMGAADVKIFAVLGAWCGM-QALPGLWMAASLAAGAHALWLLITTRTRLAEL 126

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGG 157
           +           K   PY   +S+  
Sbjct: 127 VRRSGATFELAGKASTPYAACLSVAA 152


>gi|330900442|gb|EGH31861.1| prepilin peptidase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 290

 Score = 38.3 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QAAAMLVLGWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|289674984|ref|ZP_06495874.1| prepilin peptidase [Pseudomonas syringae pv. syringae FF5]
          Length = 290

 Score = 38.3 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QAAAMLVLGWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|5821176|dbj|BAA83726.1| prepilin peptidase [Escherichia coli]
 gi|15207776|dbj|BAB62907.1| CofP [Escherichia coli]
          Length = 273

 Score = 38.3 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 16/145 (11%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFIICFCFFAF-- 78
           A+ D    ++P+ +  +ML   LL A   L  +  +   + +    I        F F  
Sbjct: 129 AVIDFDHLLLPDSLVYIMLWGGLLAAAFELSPITLKDAVISICGTWITLSTIVQLFIFIR 188

Query: 79  --NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
               +G GD+KL+ + A W GW  +    L   +I+GG++  FI   R            
Sbjct: 189 KKEGLGAGDIKLICALAAWIGWY-NIPFLLVISSIIGGVM--FINIKRRFDCGY------ 239

Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161
              +    + IP+G AIS+ G + Y
Sbjct: 240 -DGNIKNCHVIPFGPAISISGFVIY 263


>gi|307249761|ref|ZP_07531739.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858176|gb|EFM90254.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 108

 Score = 38.3 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 15/97 (15%)

Query: 65  GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            ++  +I F  F  N++G GDVKLL    +      SF  F  F+    G+L + I    
Sbjct: 23  AILCLVIGFVLFLLNVIGAGDVKLLAVLMLAVP--SSFAIFFLFLTACSGLLIIII---- 76

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                    G    +  + +  +PYGIAIS G L + 
Sbjct: 77  ---------GWLFYRQTIREKGLPYGIAISAGFLTTL 104


>gi|16803590|ref|NP_465075.1| hypothetical protein lmo1550 [Listeria monocytogenes EGD-e]
 gi|224501510|ref|ZP_03669817.1| hypothetical protein LmonFR_03167 [Listeria monocytogenes FSL
           R2-561]
 gi|16410979|emb|CAC99628.1| comC [Listeria monocytogenes EGD-e]
          Length = 236

 Score = 38.3 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            ++ I  + L F  ++D+F   +PN + IV        A L       +     +  + +
Sbjct: 98  LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLATIAILYNQSLMDLIYSGGISCLFY 157

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
           ++ F  F    +G GD+K+L   + + G+   +  F   + I+G I+ +  L ++ +
Sbjct: 158 LLFFIIFRKG-IGLGDIKILIILSTFLGFKIGYYIFFLAI-IMGTIILLTALMLKKV 212


>gi|260897206|ref|ZP_05905702.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
           parahaemolyticus Peru-466]
 gi|308088437|gb|EFO38132.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio
           parahaemolyticus Peru-466]
          Length = 192

 Score = 38.3 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65
           F+   +   F L+ A   DL + ++P+++++ +  + +  A   +  +  +   +  + G
Sbjct: 32  FTVALIFFTFFLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 91

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW  S    +   +++G I  +  L
Sbjct: 92  YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLVQL 150

Query: 122 TVRMI 126
            ++  
Sbjct: 151 RLQKQ 155


>gi|149376816|ref|ZP_01894573.1| Type II secretory pathway, prepilin signal peptidase PulO and
           related peptidase [Marinobacter algicola DG893]
 gi|149358937|gb|EDM47404.1| Type II secretory pathway, prepilin signal peptidase PulO and
           related peptidase [Marinobacter algicola DG893]
          Length = 291

 Score = 38.3 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 25/137 (18%)

Query: 29  SAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGG 84
           S  +P     +M    +L  F +  D+       + G +     +  F        MG G
Sbjct: 160 SMTLP-----LMWLGLILNYFGVLTDFSSAFWGAVAGYLSLWSVYWLFKLVTGKEGMGHG 214

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           D KLL +   W GW     + +   +++G ++ + ++  R     +P             
Sbjct: 215 DFKLLAALGAWLGW-ELLPAVILLSSLVGAVVGISLMVFRKHGREVP------------- 260

Query: 145 NKIPYGIAISMGGLISY 161
             IP+G  ++  GL+  
Sbjct: 261 --IPFGPYLAAAGLLCL 275


>gi|260881316|ref|ZP_05404111.2| type IV prepilin leader peptidase [Mitsuokella multacida DSM 20544]
 gi|260849089|gb|EEX69096.1| type IV prepilin leader peptidase [Mitsuokella multacida DSM 20544]
          Length = 217

 Score = 38.3 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
              +I  + +V    +DL   +I +R+ I      +++  LL        +   VG +VF
Sbjct: 81  VFLMIFQYFMVLYTWTDLEQRVIFDRMLIPFAVMGIISIPLLDRVLTDHLMAAAVGGVVF 140

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +         I GG D+KL+ +  +W G +   ++ +    +LGG+ ++ +L 
Sbjct: 141 LALAVLTKGGIGGG-DIKLVAALGLWLG-SDMLMTVVIAGIVLGGMAALIMLA 191


>gi|288939922|ref|YP_003442162.1| Prepilin peptidase [Allochromatium vinosum DSM 180]
 gi|288895294|gb|ADC61130.1| Prepilin peptidase [Allochromatium vinosum DSM 180]
          Length = 296

 Score = 38.3 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  A+ DL + ++P+ +++ V+     L+ F L  D +   +  + G 
Sbjct: 137 QAAAALLLTWSLIALAVIDLDTQLLPDSLTLPVLWLGLFLSLFGLFTDSQSAIIGAVAGY 196

Query: 67  IVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW P+    +   A++G ++ V ++ 
Sbjct: 197 LSLWTVFQLFRLATGKEGMGYGDFKLLALFGAWLGW-PALPQIILLSALVGALVGVGLIL 255

Query: 123 VRMITNHIPIF 133
                +  P+ 
Sbjct: 256 SGRHESGKPLP 266


>gi|26987368|ref|NP_742793.1| prepilin peptidase [Pseudomonas putida KT2440]
 gi|24982022|gb|AAN66257.1|AE016254_4 type IV pili prepilin peptidase PilD/XcpA [Pseudomonas putida
           KT2440]
          Length = 288

 Score = 38.3 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65
           V + V L   +CL+  +L D    ++P+ + +  M    ++ AF + +         + G
Sbjct: 129 VEALVALPLTWCLLALSLIDADHQLLPDVLVLPTMWLGLIVNAFGIHVPLADALWGAVAG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KL+     W GW    L+ L   +++G +  + +L
Sbjct: 189 YLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLL-SSVVGALFGLCLL 247

Query: 122 TVRMITNHIPIF 133
             R       I 
Sbjct: 248 RFRRDAMGTAIP 259


>gi|113869210|ref|YP_727699.1| Type IV pilus prepilin leader peptidase 1 [Ralstonia eutropha H16]
 gi|113527986|emb|CAJ94331.1| Type IV pilus prepilin leader peptidase 1 [Ralstonia eutropha H16]
          Length = 304

 Score = 38.3 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 53  MDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108
           +      +    G +V    +  F        MG GD KL+ +   W GW  +  + +  
Sbjct: 195 VTLPDAVIGAAAGYLVLWTAYWLFRLVRGKEGMGFGDFKLMAALGAWLGW-QALPALVLL 253

Query: 109 VAILGGILSVFILTVRMITNHIPIF 133
            +++G +  +  + +R      P  
Sbjct: 254 SSVVGVLFGLANIALRRQERDTPFP 278


>gi|302387440|ref|YP_003823262.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1]
 gi|302198068|gb|ADL05639.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1]
          Length = 139

 Score = 38.3 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 9/106 (8%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + +   +I    L  A+++DL   ++PN + + + G  ++    + +   LIAL  L+  
Sbjct: 5   LAAVQAVIFIALLCAASVTDLTKRIVPNWLCLGIAGVSIIGFTPVKLLGILIALPFLLAA 64

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
           + F           MGGGD+KL+ +  +  G T   L+ +  +++L
Sbjct: 65  VFF---------GGMGGGDIKLMAACGLVLGLTKGLLAAMAGLSLL 101


>gi|125973369|ref|YP_001037279.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Clostridium thermocellum ATCC 27405]
 gi|125713594|gb|ABN52086.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Clostridium thermocellum ATCC 27405]
          Length = 281

 Score = 38.3 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 14/133 (10%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGS---------FLLTAFLLGMDYELIALHLLVGLIVF 69
           L+     DL   +IPN++ +  L           F      +   +    L   +G    
Sbjct: 124 LIAVFFIDLDHMIIPNKLVVAALVGGVLPFVYNIFRPMDIYVDRKWWNPLLGAFIGFGFL 183

Query: 70  IICFCFFAF-----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           ++              MGGGDVKL     ++ GW  + ++        G +  V +L  +
Sbjct: 184 LLVAIVGYLVYKTDEAMGGGDVKLFAPIGLFLGWKMTIVALFISFVSAGIVSIVLLLLKK 243

Query: 125 MITNHIPIFGMFV 137
                  +FG F+
Sbjct: 244 KERRSTFVFGPFI 256


>gi|328952533|ref|YP_004369867.1| Prepilin peptidase [Desulfobacca acetoxidans DSM 11109]
 gi|328452857|gb|AEB08686.1| Prepilin peptidase [Desulfobacca acetoxidans DSM 11109]
          Length = 260

 Score = 37.9 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 16/157 (10%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVG 65
           +    ++     L+  ++ DL   ++P+ +++  +G  LL++ +   + +    +  L G
Sbjct: 96  ILLLAYVPFALALLTLSVIDLEQGLLPDVITLPGIGFGLLSSLVFQELSFFSALVGALTG 155

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
             VF      +A       MGGGDVKLL     + G     L ++ F++   G L+  IL
Sbjct: 156 AAVFQGIAWIYAKWAGKQGMGGGDVKLLAMIGAFLGI--QSLPWVIFLSASLGTLTGIIL 213

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
            +R   +         PK  L    IP+G  +++GGL
Sbjct: 214 VLRKGRH---------PKETLRSLPIPFGPFLAIGGL 241


>gi|255319719|ref|ZP_05360927.1| bacterial Peptidase A24 domain protein [Acinetobacter
           radioresistens SK82]
 gi|262379999|ref|ZP_06073154.1| type IV pilus prepilin peptidase PilD [Acinetobacter radioresistens
           SH164]
 gi|255303248|gb|EET82457.1| bacterial Peptidase A24 domain protein [Acinetobacter
           radioresistens SK82]
 gi|262298193|gb|EEY86107.1| type IV pilus prepilin peptidase PilD [Acinetobacter radioresistens
           SH164]
          Length = 286

 Score = 37.9 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 53/140 (37%), Gaps = 10/140 (7%)

Query: 13  LIPPFCLVFAALS----DLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVGLI 67
           ++    L +A ++    D  + ++P+R ++ +    L   ++ L           ++G +
Sbjct: 134 MLFGLLLTWALITLTFIDFDTQLLPDRYTLPLAALGLALNSYALYTSASSAIWGYVIGFL 193

Query: 68  VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
              I +  F        MG GD KLL +   W G     L  +   +++G I+ + +L +
Sbjct: 194 CLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLVGAIIGIVLLKI 252

Query: 124 RMITNHIPIFGMFVPKSFLM 143
           R                ++ 
Sbjct: 253 RKENQPFAFGPYIAIAGWIA 272


>gi|150403489|ref|YP_001330783.1| peptidase A24B, FlaK-like protein [Methanococcus maripaludis C7]
 gi|150034519|gb|ABR66632.1| Peptidase A24B, FlaK-like protein [Methanococcus maripaludis C7]
          Length = 230

 Score = 37.9 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLLVGLIV 68
          ++I    L+ A++ D  S  I + + I +      F + A +   DY ++   +   +I 
Sbjct: 4  YVIGALGLIMASVMDFRSREIEDYIWIFLAVFGVLFAIYASITFSDYSILINSISGFVIC 63

Query: 69 FIICFCFFAFNIMGGGDVKLL 89
          FI+ +  F    +GGGD K+L
Sbjct: 64 FILGYMMFLSG-IGGGDGKML 83


>gi|327479618|gb|AEA82928.1| type 4 prepilin peptidase PilD [Pseudomonas stutzeri DSM 4166]
          Length = 289

 Score = 37.9 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGL 66
            +   L+  + L+  ++ D+   ++P+ + + +L    +  +F L    E      + G 
Sbjct: 131 QAGAMLLLTWGLLAMSMIDVDHQLLPDSLVLPLLWVGLIANSFALFASLEDALWGAIAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     +  F        MG GD KLL     W GW    L+ +   +++G +L   +L 
Sbjct: 191 LSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLT-ILLSSVVGAVLGSILLR 249

Query: 123 VRMITNHIPIF 133
           V+   +  PI 
Sbjct: 250 VQRAESSTPIP 260


>gi|319761632|ref|YP_004125569.1| prepilin peptidase [Alicycliphilus denitrificans BC]
 gi|330823498|ref|YP_004386801.1| Prepilin peptidase [Alicycliphilus denitrificans K601]
 gi|317116193|gb|ADU98681.1| Prepilin peptidase [Alicycliphilus denitrificans BC]
 gi|329308870|gb|AEB83285.1| Prepilin peptidase [Alicycliphilus denitrificans K601]
          Length = 292

 Score = 37.9 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 22/152 (14%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
               LV  AL D  + ++P+ +++ +L + LL + L  +D + +   +        +   
Sbjct: 139 FCAALVALALIDWDTTLLPDDITLPLLWAGLLASVLRWIDVQPVDAVIGAAAGYVSLWLV 198

Query: 75  FFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           ++ F +      MG GD KL  +   WFGW  + +  +   +++G ++ +          
Sbjct: 199 YWGFKLATGKEGMGYGDFKLFAALGAWFGW-QALVPIVLMASVIGALVGIA--------- 248

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                 M    S      +P+G  ++ GGL +
Sbjct: 249 ------MKFASSLREGKYVPFGPFLAGGGLAA 274


>gi|114321314|ref|YP_742997.1| peptidase A24A, prepilin type IV [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227708|gb|ABI57507.1| peptidase A24A, prepilin type IV [Alkalilimnicola ehrlichii MLHE-1]
          Length = 166

 Score = 37.9 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 6/142 (4%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYELIALHLLVGLIVFIICFCFFAFN 79
              D     IPN +++    + L  A +     +             I  ++    FA  
Sbjct: 15  GYWDARHRRIPNLLTLPAALAGLAYAVVTQTAALGELPWGAVAAGAAIALVLTLPGFALG 74

Query: 80  IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139
            +GGGDVKLL +  +  G      SF+     + G+    IL  R+         +    
Sbjct: 75  KLGGGDVKLLLAIGLLGGHPAVLSSFVVAAFTVTGLFLALILATRLAPWPGLPGPLRCSL 134

Query: 140 SFLM---KNKIPYGIAISMGGL 158
             L    + ++P+G+ +  G L
Sbjct: 135 QRLPGPREARLPFGVGLCAGLL 156


>gi|295109284|emb|CBL23237.1| type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family
           A24A [Ruminococcus obeum A2-162]
          Length = 199

 Score = 37.9 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
            S ++ +    L+  +L D  +  IP  +++ +   FL+      +D   +  HL+  + 
Sbjct: 48  SSLLYCLMTSALLTLSLIDWRTYEIPFGINVFL---FLIGIVATVLDRGNLISHLIGAVC 104

Query: 68  VFIICFCFFAF---NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           V       F       +GGGD+KL+    +  GW    L+FL    I   + ++ I
Sbjct: 105 VSAFLEILFLLSGGRAIGGGDIKLMAVCGLILGWKQIILAFLLGCIIGSVVHTIRI 160


>gi|189425219|ref|YP_001952396.1| peptidase A24A domain protein [Geobacter lovleyi SZ]
 gi|189421478|gb|ACD95876.1| peptidase A24A domain protein [Geobacter lovleyi SZ]
          Length = 258

 Score = 37.9 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 8/129 (6%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           ++ +    L+     D    +IP+ +S+  +   FL + FL    +    L ++VG    
Sbjct: 104 IYSLLVAALIVVTFIDFDHQIIPDEISLPGVGLGFLASFFLPEPGWLSSLLGIVVGWGSL 163

Query: 70  IICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV-AILGGILSVFILTVR 124
            + F  +        MGGGD KLL     + G     + F+ F  +++G +  + I+ ++
Sbjct: 164 ALVFYSYLWLTGREGMGGGDAKLLAMLGAFLGLK--AVPFIIFTSSLVGTVAGLSIMALQ 221

Query: 125 MITNHIPIF 133
               H+ I 
Sbjct: 222 RKGRHLAIP 230


>gi|317403503|gb|EFV84006.1| hypothetical protein HMPREF0005_03134 [Achromobacter xylosoxidans
           C54]
          Length = 168

 Score = 37.9 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 19/155 (12%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGS------FLLTAFLLGMDYELIALHLLVGL 66
           L+     +    +DL    +PN + +               A   G         + +  
Sbjct: 5   LLFACWNLVLIYTDLRYRRVPNTLIVAGFAGQALWLLAAWLAPAWGYPPRWAGWPMALAG 64

Query: 67  IVFII-CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
               +  F  ++  +MG GDVK +    +  G+ P  ++ L   ++L G+ ++  L +  
Sbjct: 65  FALALPFFPLWSRRLMGAGDVKAIAILGLLAGFAPLVMT-LVAASLLAGLHALSYLFLSR 123

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                           L   + PYG  + +  L  
Sbjct: 124 S-----------RALPLRARQTPYGAYLGVAALSV 147


>gi|251796114|ref|YP_003010845.1| peptidase A24A domain protein [Paenibacillus sp. JDR-2]
 gi|247543740|gb|ACT00759.1| peptidase A24A domain protein [Paenibacillus sp. JDR-2]
          Length = 251

 Score = 37.9 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 1/121 (0%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+     V   +SDL   ++PNR+ +     F+    L  +    + +   +     ++ 
Sbjct: 104 LLLVSMSVILTVSDLKYMLLPNRILLFFAPLFIALRCLFPVGSIWLHIGGALAGGGVLLA 163

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
                   MG GDVKLL     W    P+ +         G  +   ++  +++    PI
Sbjct: 164 VVILTRGGMGLGDVKLLFLLG-WILGLPNLIPAFILSCFFGSTVGGLLMLFKVVKRKQPI 222

Query: 133 F 133
            
Sbjct: 223 P 223


>gi|329912558|ref|ZP_08275773.1| Leader peptidase (Prepilin peptidase) [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545588|gb|EGF30756.1| Leader peptidase (Prepilin peptidase) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 288

 Score = 37.9 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVG 65
           +     L+  + L+  +  D  + ++P+ ++  +L    LL      +      +    G
Sbjct: 130 ITGLATLVFAWLLIAMSGIDADTQLLPDDLTYPLLWIGLLLNVNATFVPLGDAVIGAAAG 189

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW    +  +   +++G ++ V ++
Sbjct: 190 YLCLWSVYWVFKLLTGKEGMGYGDFKLLAALGAWLGWQMLPM-IILLSSLVGALVGVSLI 248

Query: 122 TVRMITNHIPIF 133
                    PI 
Sbjct: 249 VFGKRGRENPIP 260


>gi|332800430|ref|YP_004461929.1| Prepilin peptidase [Tepidanaerobacter sp. Re1]
 gi|332698165|gb|AEE92622.1| Prepilin peptidase [Tepidanaerobacter sp. Re1]
          Length = 249

 Score = 37.9 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L+ +A +DL   +IP++V +      LL   L+     L  L   V     I     F+ 
Sbjct: 106 LIVSAFTDLEYQIIPDKVVLTTAVIGLLLNILIHGKDVLYYLMGSVLGGGTIFLIAAFSQ 165

Query: 79  NIMGGGDVKLLTSTAVWFG 97
             MGGGD+KL  +  ++ G
Sbjct: 166 GGMGGGDIKLFAAVGLFLG 184


>gi|256004345|ref|ZP_05429326.1| peptidase A24A domain protein [Clostridium thermocellum DSM 2360]
 gi|255991629|gb|EEU01730.1| peptidase A24A domain protein [Clostridium thermocellum DSM 2360]
 gi|316940397|gb|ADU74431.1| Prepilin peptidase [Clostridium thermocellum DSM 1313]
          Length = 281

 Score = 37.9 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 14/133 (10%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGS---------FLLTAFLLGMDYELIALHLLVGLIVF 69
           L+     DL   +IPN++ +  L           F      +   +    L   +G    
Sbjct: 124 LIAVFFIDLDHMIIPNKLVVAALVGGVLPFVYNIFRPMDIYVDRKWWNPLLGAFIGFGFL 183

Query: 70  IICFCFFAF-----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           ++              MGGGDVKL     ++ GW  + ++        G +  V +L  +
Sbjct: 184 LLVAIVGYLVYKTDEAMGGGDVKLFAPIGLFLGWKMTIVALFISFVSAGIVSIVLLLLKK 243

Query: 125 MITNHIPIFGMFV 137
                  +FG F+
Sbjct: 244 KERRSTFVFGPFI 256


>gi|49089278|gb|AAT51664.1| PA4295 [synthetic construct]
          Length = 161

 Score = 37.9 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 43/149 (28%), Gaps = 2/149 (1%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L            D+    + N + +       +  ++          ++ +  +   +C
Sbjct: 4   LALALWASVCGYQDIKRLRVSNWLILGGFLISFVYLYVKESSLTGATANMAMTALFIGVC 63

Query: 73  FCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
                +    +G  DVK L +  +         S  F   +   +  +  L  R +    
Sbjct: 64  LSLPGYLLGRLGAADVKYLAALGLASDPLTVLYSLAFGCLLCIALFILVKLFKRSVEKSA 123

Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
               + + ++       P+  A+  G L 
Sbjct: 124 MNEEVRLRRAPSKDKSFPFIFAMGAGLLA 152


>gi|254831951|ref|ZP_05236606.1| hypothetical protein Lmon1_11380 [Listeria monocytogenes 10403S]
 gi|284801940|ref|YP_003413805.1| hypothetical protein LM5578_1695 [Listeria monocytogenes 08-5578]
 gi|284995082|ref|YP_003416850.1| hypothetical protein LM5923_1647 [Listeria monocytogenes 08-5923]
 gi|284057502|gb|ADB68443.1| hypothetical protein LM5578_1695 [Listeria monocytogenes 08-5578]
 gi|284060549|gb|ADB71488.1| hypothetical protein LM5923_1647 [Listeria monocytogenes 08-5923]
          Length = 236

 Score = 37.9 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            ++ I  + L F  ++D+F   +PN + IV        A L       +     +  + +
Sbjct: 98  LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLATIAILYNQTLMDLIYSGGISCLFY 157

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
           ++ F  F    +G GD+K+L   + + G+   +  F   + I+G I+ +  L ++ +
Sbjct: 158 LLFFIIFRKG-IGLGDIKILIILSTFLGFKIGYYIFFLAI-IMGTIILLTALMLKKV 212


>gi|319651728|ref|ZP_08005854.1| hypothetical protein HMPREF1013_02466 [Bacillus sp. 2_A_57_CT2]
 gi|317396547|gb|EFV77259.1| hypothetical protein HMPREF1013_02466 [Bacillus sp. 2_A_57_CT2]
          Length = 180

 Score = 37.9 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
               +V   +SD    +IPN+V +V          L+ +     +L   +   + ++   
Sbjct: 35  LVSLMVIIFVSDYKYMIIPNKVLLVFGVILTAERILIPLSPWWDSLAGGILGFLLLLFIA 94

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             +   MGGGD+KL +   +  G     LSF     + G  L    + + ++    PI 
Sbjct: 95  VISKGGMGGGDIKLYSVIGIALGVKLVLLSFFLAT-LFGAFLGGTGMLIGVVKKGKPIP 152


>gi|187479018|ref|YP_787042.1| type 4 prepilin leader peptidase [Bordetella avium 197N]
 gi|115423604|emb|CAJ50143.1| type 4 prepilin leader peptidase [Bordetella avium 197N]
          Length = 168

 Score = 37.9 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 6/112 (5%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF------LLGMDYELIALH 61
            +  +++         + D     +PN +      + L                    L 
Sbjct: 14  ENVWWMVLLAFNATVVVYDFRWRRVPNWLLSFAALAQLAWLAWHSISGAWPASGPSGWLD 73

Query: 62  LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
             +  ++ ++   F+   +MG GDVK L    +W G+ P  +  +      G
Sbjct: 74  AGLPFVIGLLFIVFWRLRLMGAGDVKYLAVLGLWLGFMPWLMVLMLASVPCG 125


>gi|260426147|ref|ZP_05780126.1| peptidase A24A prepilin type IV [Citreicella sp. SE45]
 gi|260420639|gb|EEX13890.1| peptidase A24A prepilin type IV [Citreicella sp. SE45]
          Length = 165

 Score = 37.9 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
          + P CL + + +D+    I N+ ++++L  F++      + ++          +  +   
Sbjct: 16 VLPICL-YVSFTDMRELRITNQANLLLLLVFMVVGAFA-LPFDAYLWRYTHLAVALVAGI 73

Query: 74 CFFAFNIMGGGDVKLLTSTA 93
             A  IMG GD K + + A
Sbjct: 74 ALNAGGIMGAGDAKFIAAAA 93


>gi|190574776|ref|YP_001972621.1| putative transmembrane peptidase [Stenotrophomonas maltophilia
           K279a]
 gi|190012698|emb|CAQ46326.1| putative transmembrane peptidase [Stenotrophomonas maltophilia
           K279a]
          Length = 182

 Score = 37.9 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 3/111 (2%)

Query: 23  ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC--FFAFNI 80
           A+SDL++  +PN   +      +                         +     F+A   
Sbjct: 17  AISDLYARRVPNAWLLSASIIAIALIIAGQFSTPRQPWPAHAAGAALGLVALLPFYAIRW 76

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
           MG GDVK      +  GW  + L      ++  G+ +  I+  R +   +P
Sbjct: 77  MGAGDVKFFAVLGLMLGW-KALLPIWMVASLAAGLHAAVIIVGRRLGVMLP 126


>gi|258623897|ref|ZP_05718850.1| hypothetical protein VMB_01510 [Vibrio mimicus VM603]
 gi|258583691|gb|EEW08487.1| hypothetical protein VMB_01510 [Vibrio mimicus VM603]
          Length = 152

 Score = 37.9 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 16/157 (10%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M    ++   +  +  +  +    SD  +  IPN     ++    L + LLG+    I  
Sbjct: 1   MMTILLLQWILIAVLLYLSLAVCYSDNQNRKIPN----TLVWQIGLCSVLLGILGGYIFT 56

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
                L V ++ F  +    +GGGD+KL  S    FG  P +L     + +    L + +
Sbjct: 57  ASAHALAVLLLGFLTWLSGKIGGGDIKL--SFVFLFGIDPQWLILCAPLLVCLTTLQIVV 114

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
           + +    + +P +          K  IP GI +++ G
Sbjct: 115 MGLYAQLSDVPAY----------KKGIPLGIPLALTG 141


>gi|320529765|ref|ZP_08030843.1| peptidase, A24 family protein [Selenomonas artemidis F0399]
 gi|320138004|gb|EFW29908.1| peptidase, A24 family protein [Selenomonas artemidis F0399]
          Length = 196

 Score = 37.9 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    L++ A  D+    + +   I +  +F   AF  G     +   +L G +  ++ +
Sbjct: 51  LFSAVLLWLAFLDVRDGFLYD--CITLPFAFAGVAFSAGGLTMPLIDAILGGTLCGVLFY 108

Query: 74  CFF--AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
           C +  A   MGGGDVK      +W GW  + ++ ++   ++GG+++ F+L  R       
Sbjct: 109 CLYIAARGGMGGGDVKFALGIGLWLGWESAIIA-VWTAFLIGGMMAAFLLLTRRKGRRDA 167

Query: 132 IF 133
           + 
Sbjct: 168 LP 169


>gi|254828215|ref|ZP_05232902.1| comC [Listeria monocytogenes FSL N3-165]
 gi|258600604|gb|EEW13929.1| comC [Listeria monocytogenes FSL N3-165]
          Length = 236

 Score = 37.9 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            ++ I  + L F  ++D+F   +PN + IV        A L       +     +  + +
Sbjct: 98  LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLATIAILYNQTLMDLIYSGGISCLFY 157

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
           ++ F  F    +G GD+K+L   + + G+   +  F   + I+G I+ +  L ++ +
Sbjct: 158 LLFFIIFRKG-IGLGDIKILIILSTFLGFKIGYYIFFLAI-IMGTIILLTALMLKKV 212


>gi|217975016|ref|YP_002359767.1| Prepilin peptidase [Shewanella baltica OS223]
 gi|217500151|gb|ACK48344.1| Prepilin peptidase [Shewanella baltica OS223]
          Length = 308

 Score = 37.6 bits (86), Expect = 0.63,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           I  F LV     DL   ++P+++++ +L    ++             +    G +     
Sbjct: 158 ILTFVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIIGAAAGYLSLWSI 217

Query: 73  FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           F  F        MG GD KLL     W GW    L  +   +++G ++ + ++       
Sbjct: 218 FWLFKILTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGAVVGITMI------- 269

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                   V K     N IP+G  I+  G I+ 
Sbjct: 270 --------VSKRLKQGNPIPFGPYIAAAGWIAL 294


>gi|88854697|ref|ZP_01129363.1| Peptidase A24A-like protein [marine actinobacterium PHSC20C1]
 gi|88815858|gb|EAR25714.1| Peptidase A24A-like protein [marine actinobacterium PHSC20C1]
          Length = 267

 Score = 37.6 bits (86), Expect = 0.63,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLL----GMDYELIALHLLVG 65
            FL      +  AL DL +  +PN++ +  ++  F L A            + A+     
Sbjct: 108 AFLYLAAISIALALIDLDTHTLPNKIVLPSIVVGFALLALASFGTGNWGALVGAVAGAAA 167

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFILTV 123
           L VF       +   MG GDVKL     ++ GW    +  +  F   +LGG+ ++ +L +
Sbjct: 168 LFVFYFVVALISPRGMGMGDVKLAAVLGLYLGWLGWGVLAVGAFAAFLLGGVFAIALLLI 227

Query: 124 RMITNHIPIF 133
                   I 
Sbjct: 228 GRARRRTAIP 237


>gi|304412465|ref|ZP_07394071.1| Prepilin peptidase [Shewanella baltica OS183]
 gi|307307124|ref|ZP_07586862.1| Prepilin peptidase [Shewanella baltica BA175]
 gi|304349107|gb|EFM13519.1| Prepilin peptidase [Shewanella baltica OS183]
 gi|306910363|gb|EFN40794.1| Prepilin peptidase [Shewanella baltica BA175]
          Length = 308

 Score = 37.6 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           I  F LV     DL   ++P+++++ +L    ++             +    G +     
Sbjct: 158 ILTFVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIVGAAAGYLSLWSI 217

Query: 73  FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           F  F        MG GD KLL     W GW    L  +   +++G ++ + ++       
Sbjct: 218 FWLFKILTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGAVVGITMI------- 269

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                   V K     N IP+G  I+  G I+ 
Sbjct: 270 --------VSKRLKQGNPIPFGPYIAAAGWIAL 294


>gi|254455857|ref|ZP_05069286.1| type II Secretion PilD [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082859|gb|EDZ60285.1| type II Secretion PilD [Candidatus Pelagibacter sp. HTCC7211]
          Length = 245

 Score = 37.6 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 11/113 (9%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPN--RVSIVMLGSFLLTAFLLGMDYELIALHLLV 64
           + + +F+I     +     DL   +IPN     ++ +G        L   +      L+ 
Sbjct: 87  ITTLLFIILALTFIIIFFIDLKHYIIPNGLTFPLMFIGFIKSFDPNLNELFPNYINSLIG 146

Query: 65  GLIVF-IICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
           G+  + II    F + +      MG GD KLL++   WFGW    + F+ F +
Sbjct: 147 GVFGYGIIWAIIFIYKVLRNKEGMGLGDAKLLSAIGFWFGWI--AIPFVIFSS 197


>gi|254515230|ref|ZP_05127291.1| type IV pilus prepilin peptidase PilD [gamma proteobacterium
           NOR5-3]
 gi|219677473|gb|EED33838.1| type IV pilus prepilin peptidase PilD [gamma proteobacterium
           NOR5-3]
          Length = 295

 Score = 37.6 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 19  LVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
           L+  A+ D+ + ++P+ +++ +L    L   FL         L    G ++    +  F 
Sbjct: 149 LIALAVIDIDTQLLPDDITLPLLWAGLLFNVFLGPTAPVDAILGAAGGYLLLWSIYWLFK 208

Query: 78  FN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
                  MG GD KLL +   W GW  +    +   + +G +L V I+ V+      P+ 
Sbjct: 209 LATGKEGMGYGDFKLLAALGAWLGW-QNLPIIILLSSAVGAVLGVLIIVVQGKDRSHPLP 267


>gi|212637456|ref|YP_002313981.1| Prepilin peptidase [Shewanella piezotolerans WP3]
 gi|212558940|gb|ACJ31394.1| Prepilin peptidase [Shewanella piezotolerans WP3]
          Length = 303

 Score = 37.6 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 23/153 (15%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           I  F LV     DL   ++P+++++ +L   L+   L G    +    +        +  
Sbjct: 153 ILTFALVVLTGIDLDEMLLPDQITLPLLWLGLIL-NLSGTFVSMSDAIVGAAAGYLSLWS 211

Query: 74  CFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            F+AF +      MG GD KLL     WFGW    L  +   +++G I+ + ++  + + 
Sbjct: 212 VFWAFKLLTGKEGMGYGDFKLLAVFGAWFGWQVLPL-VILLSSLVGAIVGISLIAFKKLN 270

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
              P               IP+G  I+  G I+
Sbjct: 271 QGNP---------------IPFGPYIAAAGWIA 288


>gi|153002447|ref|YP_001368128.1| prepilin peptidase [Shewanella baltica OS185]
 gi|151367065|gb|ABS10065.1| Prepilin peptidase [Shewanella baltica OS185]
          Length = 308

 Score = 37.6 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           I  F LV     DL   ++P+++++ +L    ++             +    G +     
Sbjct: 158 ILTFVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIIGAAAGYLSLWSI 217

Query: 73  FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           F  F        MG GD KLL     W GW    L  +   +++G ++ + ++       
Sbjct: 218 FWLFKILTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGAVVGITMI------- 269

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                   V K     N IP+G  I+  G I+ 
Sbjct: 270 --------VSKRLKQGNPIPFGPYIAAAGWIAL 294


>gi|315127773|ref|YP_004069776.1| leader peptide processing enzyme [Pseudoalteromonas sp. SM9913]
 gi|315016287|gb|ADT69625.1| leader peptide processing enzyme [Pseudoalteromonas sp. SM9913]
          Length = 292

 Score = 37.6 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 63/155 (40%), Gaps = 21/155 (13%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66
            + ++++  + LV     D+   ++P+++++ +L   L+ + +   +      +    G 
Sbjct: 134 QALLYIVVTWALVALTFIDIDHMLLPDQLTLPLLWLALIASVMGYTIAPSDAIIGAACGY 193

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL       GW  S L+ +   +++G ++ + +L+
Sbjct: 194 LSLWSVFWLFKLITGKEGMGYGDFKLLAVFGAILGW-QSLLTIILLSSVVGAVIGIALLS 252

Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157
           +               +       IP+G  +++ G
Sbjct: 253 I---------------QGKDKATPIPFGPYLAIAG 272


>gi|317491681|ref|ZP_07950116.1| type IV leader peptidase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920115|gb|EFV41439.1| type IV leader peptidase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 112

 Score = 37.6 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
             D+F   I +   +++  S +   FL     +    ++   ++  +  F  F   + GG
Sbjct: 2   WQDIFFRKITHSSLLLLFVSLIPLIFL-----QQQWPNVTFAILTLMGGFLLFVARLWGG 56

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           GD KL+   A+ F     F  FLF  A LGG +++F L   +I   +  F M +P
Sbjct: 57  GDAKLVAILALAF-QGALFYDFLFLTAFLGGTIAIFGLVFFVIICVVTAFPMVLP 110


>gi|291523560|emb|CBK81853.1| type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family
           A24A [Coprococcus catus GD/7]
          Length = 254

 Score = 37.6 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 42/105 (40%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + S V  +    L+  ++ D  +  IP  ++I +    + +  L         +  +   
Sbjct: 102 LSSGVMCLMTSALIVLSVIDWRTYEIPVAINIFLGILGVASVILELDAVLAHLMGAVCVS 161

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
            + ++ +       +GGGD+KL+ +  +  GW    L+F     I
Sbjct: 162 GILLVIYLLSGGRAIGGGDIKLMAACGLILGWQLIILAFFLGCII 206


>gi|283778978|ref|YP_003369733.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068]
 gi|283437431|gb|ADB15873.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068]
          Length = 145

 Score = 37.6 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
             DL +  +P+ +S  + G + +     G+     +   L GL+ F I F F     +GG
Sbjct: 18  WHDLRTREVPDWISYAL-GLWGIVCIACGLGNNSWSGVFLGGLLAFAITFPFCWLGGLGG 76

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
            DV+L+    + FG +   L      A+LGG+L++  + 
Sbjct: 77  ADVRLMVGLGMIFGPSVLLLL-AILTALLGGMLALVAVA 114


>gi|312621775|ref|YP_004023388.1| peptidase a24a prepilin type iv [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|312202242|gb|ADQ45569.1| peptidase A24A prepilin type IV [Caldicellulosiruptor
          kronotskyensis 2002]
          Length = 151

 Score = 37.6 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 6  MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
          M      ++       A+  D+ +  IP+ +        ++ A  +     L   +L+V 
Sbjct: 1  MQSLLSLILAVAITAIASYYDIKTRQIPDWI----WALTVVLAIAIWQKNLLKNGNLMVA 56

Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG 97
           ++FI  F    + ++GGGD+KL+++ A+  G
Sbjct: 57 ALIFICLFLLAYYKLLGGGDLKLISALALLVG 88


>gi|194290796|ref|YP_002006703.1| type IV prepilin peptidase [Cupriavidus taiwanensis LMG 19424]
 gi|193224631|emb|CAQ70642.1| TYPE 4 PREPILIN PEPTIDASE BIFUNCTIONNAL: LEADER PEPTIDASE AND
           N-METHYLTRANSFERASE TRANSMEMBRANE PROTEIN [Cupriavidus
           taiwanensis LMG 19424]
          Length = 307

 Score = 37.6 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGL 66
            +   L+  + L+   + D  + ++P+++++ +L   LL     L +      +    G 
Sbjct: 153 QALAALVLVWGLLALTMIDADTQLLPDQITLPLLWIGLLLNVAGLFVALPDAVIGAAAGY 212

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +V  I +  F        MG GD KL+ +   WFGW  +  + +   ++ G +  +  + 
Sbjct: 213 LVLWIAYWLFRLLRGKEGMGFGDFKLMAALGAWFGW-QALPALVLLSSVAGVLFGLANIA 271

Query: 123 VRMITNHIPIF 133
           +R      P  
Sbjct: 272 LRRQDRDTPFP 282


>gi|159904729|ref|YP_001548391.1| peptidase A24B [Methanococcus maripaludis C6]
 gi|159886222|gb|ABX01159.1| Peptidase A24B, FlaK domain protein [Methanococcus maripaludis
          C6]
          Length = 230

 Score = 37.6 bits (86), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLLVGLIV 68
          ++I    L+ A++ D  S  I + + I +      F + + +  +DY ++   +   +I 
Sbjct: 4  YIIGALGLIIASVQDFRSREIEDYIWIFLAVFGVLFAIYSSITLLDYSILINSISGFVIC 63

Query: 69 FIICFCFFAFNIMGGGDVKLL 89
          FI+ +  F    +GGGD K+L
Sbjct: 64 FILGYMMFLSG-IGGGDGKML 83


>gi|225376654|ref|ZP_03753875.1| hypothetical protein ROSEINA2194_02296 [Roseburia inulinivorans DSM
           16841]
 gi|225211537|gb|EEG93891.1| hypothetical protein ROSEINA2194_02296 [Roseburia inulinivorans DSM
           16841]
          Length = 158

 Score = 37.6 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 65/137 (47%), Gaps = 10/137 (7%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           +    ++ +A+ LI    L   A++D+   +IPN++ +++L  +     +L +      L
Sbjct: 4   LSNLTVIQTAMTLIFFCGLGILAVTDIKRKIIPNKILVLLLLFWTAGVSMLLILQTEFGL 63

Query: 61  HLL--------VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
            +L        +G I+F++C+   +   +G GDVKL+    ++       +  +F+  ++
Sbjct: 64  TILFESLAGGTIGGIIFLLCYLL-SKGQLGAGDVKLVFVMGLYLT-GERIIGAVFYGTLI 121

Query: 113 GGILSVFILTVRMITNH 129
             + SV +L  + IT  
Sbjct: 122 CCVYSVLLLIRKKITRK 138


>gi|227114122|ref|ZP_03827778.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 281

 Score = 37.6 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 24  LSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN--- 79
           + D+ + ++P+ +++ +L    L       +      +  + G +   + +  F +    
Sbjct: 148 VIDIKTLLLPDVLTLSLLWIGLLFNLSETFVPLSDAVVGAMAGYLSLWLLYWVFKYATGK 207

Query: 80  -IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             +G GD KLL +   W GW  +  + +   A+ G ++++    +R      P+ 
Sbjct: 208 EALGYGDFKLLAALGAWLGW-QALPNLVLVAALSGLVVTLVWRGLRKEDTAKPLA 261


>gi|87299149|emb|CAJ76212.1| competence transcription factor C [Bacillus sp. Ob 07]
 gi|87299163|emb|CAJ76219.1| competence transcription factor C [Bacillus sp. Ob 20]
          Length = 186

 Score = 37.6 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 37/102 (36%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +     ++     + + + C        +GG
Sbjct: 79  VTDYIYMLIPNRILAWFACLLILECVFVPLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 138

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           GD+KLL+      G    F+              V I+  RM
Sbjct: 139 GDIKLLSLLGFIVGLKGIFMILFLASCFSLCFFGVGIVLKRM 180


>gi|92116345|ref|YP_576074.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14]
 gi|91799239|gb|ABE61614.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14]
          Length = 159

 Score = 37.6 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 6/143 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVG 65
           + +A   +     V+ A  DL   +IP+R+++++  + ++  A L G +     L   V 
Sbjct: 5   LTTASLSVLGLACVWLAWIDLRDGIIPDRLNLLVAATGVVRMAALAGWEPAGARLCEGVV 64

Query: 66  LIVFIICFCFFAFNI-----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           +   +    +  F       +G GDVKLL ++AVW G        L           +  
Sbjct: 65  IGAVVWLLRWLYFKWRKLQGLGLGDVKLLAASAVWIGVAGVPTQLLIASVTALAAAGLMQ 124

Query: 121 LTVRMITNHIPIFGMFVPKSFLM 143
           L+ R +T    +         L+
Sbjct: 125 LSKRTVTRQTALPFGPFLALGLL 147


>gi|253689224|ref|YP_003018414.1| Prepilin peptidase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755802|gb|ACT13878.1| Prepilin peptidase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 281

 Score = 37.6 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 4   SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHL 62
             M      ++  F +V   + D+ + ++P+ +++ +L    L       +      +  
Sbjct: 129 PGMALCGALILLSFLVVL-TVIDIKTLLLPDVLTLSLLWMGLLFNLSETFVPLRDAVVGA 187

Query: 63  LVGLIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
           + G +   + +  F +      +G GD KLL +   W GW  +  + +   A+ G ++++
Sbjct: 188 MAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGW-QALPNLVLVAALSGLVVTL 246

Query: 119 FILTVRMITNHIPIF 133
               VR      P+ 
Sbjct: 247 IWRGVRKEDTVKPLA 261


>gi|108758056|ref|YP_631308.1| Type IV leader peptidase family protein [Myxococcus xanthus DK
           1622]
 gi|108461936|gb|ABF87121.1| Type IV leader peptidase family protein [Myxococcus xanthus DK
           1622]
          Length = 179

 Score = 37.6 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 69/168 (41%), Gaps = 14/168 (8%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVS---IVMLGSFLLTAFLLGMDYELIALHLL 63
           V  A++ +    LV + ++D+    I + V+   + +     L    +G     +   ++
Sbjct: 5   VQIALWTVLGVALVISVVTDVLRREILDAVTYPLMAVGLGVRLATEGVGDLEHGLISGVV 64

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
            G+ + ++         MG GDVKL+       G+ P+ L+   F++++G + +V  L  
Sbjct: 65  SGVGLALMLLSAALRGRMGWGDVKLMGGVGAVLGF-PAVLAAAAFISLVGALQAVVTLLW 123

Query: 124 RMITNHIPIFGMFVPKSF----------LMKNKIPYGIAISMGGLISY 161
           +          +     +            +  IPYG+AI++G + + 
Sbjct: 124 QGAVWDTLAAVVRRWAVWVRLASADAQPAPQRHIPYGVAIALGTVWAL 171


>gi|317131776|ref|YP_004091090.1| Prepilin peptidase [Ethanoligenens harbinense YUAN-3]
 gi|315469755|gb|ADU26359.1| Prepilin peptidase [Ethanoligenens harbinense YUAN-3]
          Length = 252

 Score = 37.6 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65
           + +AV+      LV  A  D   ++IPN + + ++        F  G       +     
Sbjct: 98  LSAAVYAAFICALVVTAFIDYDQSIIPNGIVLYILAVGVPAIFFTQGTGLIDRVIGFFAA 157

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +  +I +       +G GDVKL+ +     GW    LS L   +I+G ++ V ++    
Sbjct: 158 SVPLLIAYFV-TRGGLGLGDVKLMAAGGFLLGWKLILLS-LAVGSIVGAVVGVSLVLRGR 215

Query: 126 ITNHIPIF 133
            +    + 
Sbjct: 216 KSMRSAVP 223


>gi|70734191|ref|YP_257831.1| hypothetical protein PFL_0689 [Pseudomonas fluorescens Pf-5]
 gi|68348490|gb|AAY96096.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 155

 Score = 37.6 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           F +    L   AL DL    I N +++       +     G  +           ++  +
Sbjct: 3   FWVLWVWLAICALQDLRQRHIANGLTLGAALLATVYLLWSGTTWLGAGASQGGWALLLAL 62

Query: 72  CFCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
            F    +A   MG GDVKL+ +  +  G      +F+
Sbjct: 63  LFTLPGYASGRMGAGDVKLMAALGLASGPLYLLGTFI 99


>gi|114566089|ref|YP_753243.1| leader peptidase (prepilin peptidase) / N-methyltransferase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337024|gb|ABI67872.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 250

 Score = 37.6 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    LV AA +D+   +IP+ +S+  L   L   F+     + +   +  GLI   I 
Sbjct: 102 VVLTAILVAAAFTDINKGIIPDTLSLTGLLLGLGLGFVTIGIKQSLLGAVGFGLIFLFIA 161

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
               +   MGGGD+KL      + G++ + +  +   + LGG+ +V +L 
Sbjct: 162 --LISRGGMGGGDIKLAALIGAFTGFSGALM-VILISSWLGGLWAVVLLI 208


>gi|298485507|ref|ZP_07003590.1| Leader peptidase (Prepilin peptidase) [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159971|gb|EFI01009.1| Leader peptidase (Prepilin peptidase) [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 290

 Score = 37.2 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 45  LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100
           ++ AF L           + G +     F  F        MG GD KLL     W GW  
Sbjct: 169 IVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQI 228

Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             L+ +   +++G +L V ++ VR + +  PI 
Sbjct: 229 LPLT-ILLSSLVGAVLGVIMMRVRRVESGTPIP 260


>gi|312621078|ref|YP_003993806.1| type iv prepilin peptidase tadv/cpaa [Photobacterium damselae
           subsp. damselae]
 gi|311872799|emb|CBX86890.1| Type IV prepilin peptidase TadV/CpaA [Photobacterium damselae
           subsp. damselae]
          Length = 146

 Score = 37.2 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 16/139 (11%)

Query: 21  FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80
           +  + D+    I N+  +V +GS  L   +   +Y ++   + + +  FI+      F I
Sbjct: 18  YICIQDIRLRKISNKSCVV-VGSICLILSINQANYSIVPYTITIFIFGFILF----LFRI 72

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
           +  GD+KL+++ ++        L+ +  + + G +    I+ +R+             KS
Sbjct: 73  IAAGDIKLISAFSIAIDPQYILLTLICVLFLGGLVAFFQIIWLRVT-----------RKS 121

Query: 141 FLMKNKIPYGIAISMGGLI 159
                 +PYG+ I +G L+
Sbjct: 122 LNDSLGVPYGVPICIGCLL 140


>gi|121998801|ref|YP_001003588.1| prepilin peptidase [Halorhodospira halophila SL1]
 gi|121590206|gb|ABM62786.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Halorhodospira halophila SL1]
          Length = 296

 Score = 37.2 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 8/147 (5%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+  + L+ AA  D    ++P+ +++  L   L+ + +           +        + 
Sbjct: 147 LLLTWALIAAAAIDYEHYLLPDALTLPALWLGLIWSVVDPGPPTPTDAIIGAVAGYLALW 206

Query: 73  FCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI-LTVRM 125
             F    +      MG GD KL  +   W GW  +  + + F A+ G ++++ + +  R 
Sbjct: 207 AIFHGHRLVTGREGMGYGDFKLTAALGAWLGW-QALPALVLFAALTGLLVAIVLAVRSRP 265

Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIA 152
           +   +P         +++    P G+A
Sbjct: 266 LGQPLPFGPALALAGWVLLVLSPSGVA 292


>gi|332702808|ref|ZP_08422896.1| Prepilin peptidase [Desulfovibrio africanus str. Walvis Bay]
 gi|332552957|gb|EGJ50001.1| Prepilin peptidase [Desulfovibrio africanus str. Walvis Bay]
          Length = 256

 Score = 37.2 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 20/152 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIV---MLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           +I    L+ A+  DL + ++P+R+++    +   F +    L +           G    
Sbjct: 106 MILGGMLLVASGIDLDNFILPDRLTLSGFPLALGFAVLRPDLALSDATWGAVAGAGAFKL 165

Query: 70  IICFCFFAFNI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
           I     F   +  +G GDVKL+     W GW                ++ + +L   +  
Sbjct: 166 IQVSYKFLRGVDGLGTGDVKLMLLIGAWLGWQ---------------LVPMAVLVGSVAA 210

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
             + I      K       +PYG  +S+G + 
Sbjct: 211 LPVGILYALRSKRTGQPAIVPYGPFLSLGAMA 242


>gi|297543565|ref|YP_003675867.1| peptidase A24A prepilin type IV [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841340|gb|ADH59856.1| peptidase A24A prepilin type IV [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 147

 Score = 37.2 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             L + + +DL    +P+   + +     + +      ++   L   +  I+ +I    F
Sbjct: 13  MILSYLSYTDLKKREVPDFAVLAL----FIYSLFTCTSFKESILMAALVFILLLIPSILF 68

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
               +GGGD+KLLT+ A + G   S L+F  F+ ++
Sbjct: 69  E-GSIGGGDIKLLTALAFFMGRDFSVLAFPMFILLV 103


>gi|264676896|ref|YP_003276802.1| peptidase A24A-like protein [Comamonas testosteroni CNB-2]
 gi|299529714|ref|ZP_07043151.1| peptidase A24A-like protein [Comamonas testosteroni S44]
 gi|262207408|gb|ACY31506.1| peptidase A24A-like protein [Comamonas testosteroni CNB-2]
 gi|298722577|gb|EFI63497.1| peptidase A24A-like protein [Comamonas testosteroni S44]
          Length = 289

 Score = 37.2 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 20/143 (13%)

Query: 36  VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN----IMGGGDVKLLTS 91
           + ++  G          +  +      + G +   + F  F        MG GD KL  +
Sbjct: 163 LPLLWAGLIASALQWTSVPLQQSLWGAVAGYMSLWLIFWAFKLATGKEGMGYGDFKLFAA 222

Query: 92  TAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGI 151
              WFGW  + +  +   +++G ++ + +                +         +P+G 
Sbjct: 223 LGAWFGW-QALVPIILMASVVGAVIGIAL---------------KINSKLREGGYVPFGP 266

Query: 152 AISMGGLISYPDSYLFKVALMGL 174
            ++ GG +S        ++  GL
Sbjct: 267 FLAGGGFVSLIWGPQAVLSFAGL 289


>gi|312143778|ref|YP_003995224.1| Prepilin peptidase [Halanaerobium sp. 'sapolanicus']
 gi|311904429|gb|ADQ14870.1| Prepilin peptidase [Halanaerobium sp. 'sapolanicus']
          Length = 250

 Score = 37.2 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 20  VFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           +  ++ D    +IPN ++   +L  F+       +      L +++  ++ +     F  
Sbjct: 110 IVISVIDYKYMIIPNVITYSGILIGFISAIIFDYLSIFDSLLGIVIPALILLAVALIFK- 168

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
             MG GDVKL+     + G+  S +S +F  +++G ++ + ++ +
Sbjct: 169 GGMGMGDVKLVAMLGAFLGYKYSLMS-IFIGSLVGSVIGLSLMGL 212


>gi|330872528|gb|EGH06677.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 290

 Score = 37.2 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
             A  L+  + L+  +L D    ++P+  V  ++    ++ AF L           + G 
Sbjct: 131 QVAAILVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLSDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           VR + +  PI 
Sbjct: 250 VRRVESGTPIP 260


>gi|297537719|ref|YP_003673488.1| Prepilin peptidase [Methylotenera sp. 301]
 gi|297257066|gb|ADI28911.1| Prepilin peptidase [Methylotenera sp. 301]
          Length = 290

 Score = 37.2 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           I  F L+     D  + ++P+ +++ +L   LL     G      A+ +       I+  
Sbjct: 142 IFTFALIALTFIDFDTQLLPDDITLPLLWLGLLLNLNNGFTDLKSAV-IGAMAGYLILWS 200

Query: 74  CFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            ++AF +      MG GD KLL +   WFGW     + +   ++LG ++ + ++      
Sbjct: 201 VYWAFKLVTGKEGMGYGDFKLLAALGAWFGW-QLLPAVILLSSVLGAVIGISLIVFTKRG 259

Query: 128 NHIPIF 133
             IP+ 
Sbjct: 260 REIPMP 265


>gi|261820722|ref|YP_003258828.1| prepilin peptidase [Pectobacterium wasabiae WPP163]
 gi|261604735|gb|ACX87221.1| Prepilin peptidase [Pectobacterium wasabiae WPP163]
          Length = 282

 Score = 37.2 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 24  LSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN--- 79
           + D+ + ++P+ +++ +L G  L       +      +  + G +   + +  F +    
Sbjct: 149 VIDIKTLLLPDVLTLSLLWGGLLFNLSETFVPLGDAVVGAMAGYLSLWLLYWVFKYATGK 208

Query: 80  -IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             +G GD KLL +   W GW  +  + +   A+ G ++++    +R    + P+ 
Sbjct: 209 EALGYGDFKLLAALGAWLGWR-ALPNLVLVAALSGLVVTLVWRGLRKEETNKPLA 262


>gi|134046086|ref|YP_001097572.1| preflagellin peptidase [Methanococcus maripaludis C5]
 gi|132663711|gb|ABO35357.1| preflagellin peptidase, Aspartic peptidase, MEROPS family A24B
          [Methanococcus maripaludis C5]
          Length = 230

 Score = 37.2 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL---HLLVGLIV 68
          ++I    L+ A++ D  S  I + + I +    +L A    +     ++    +   +I 
Sbjct: 4  YVIGALGLIIASVMDFRSREIEDYIWIFLAVFGILFAIYSSITLSDYSILINSISGFVIC 63

Query: 69 FIICFCFFAFNIMGGGDVKLL 89
          FI+ +  F    +GGGD K+L
Sbjct: 64 FILGYMMFLSG-IGGGDGKML 83


>gi|225024580|ref|ZP_03713772.1| hypothetical protein EIKCOROL_01457 [Eikenella corrodens ATCC
           23834]
 gi|224942731|gb|EEG23940.1| hypothetical protein EIKCOROL_01457 [Eikenella corrodens ATCC
           23834]
          Length = 285

 Score = 37.2 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 25/154 (16%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+    LV     D  + ++P+++++ ++    L    +  +      L  +VG +   +
Sbjct: 132 LVFTAVLVALTFIDADTQLLPDQLTLPLIWLGLLFNWQVGFVSLPSALLGAVVGYLSLWL 191

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            F  F        MG GD KLL +   W G   S L  + FVA L G+++  ++      
Sbjct: 192 LFHLFKLITGKEGMGYGDFKLLAALGAWLGV--STLPVIVFVAALVGLVAALVM------ 243

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                              I +G A+++ G + +
Sbjct: 244 ------------RAAKGQPIAFGPALAIAGWLVF 265


>gi|297570269|ref|YP_003691613.1| Prepilin peptidase [Desulfurivibrio alkaliphilus AHT2]
 gi|296926184|gb|ADH86994.1| Prepilin peptidase [Desulfurivibrio alkaliphilus AHT2]
          Length = 270

 Score = 37.2 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
            ++ I    L+     DL   +IP+ +S+  ++  F  +  L G+ +    L +L+G   
Sbjct: 113 LIYFIFSAALLAILFIDLDHQLIPDVISLPGIVLGFAASFVLSGVTWVDAGLGILLGGGS 172

Query: 69  FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           F +    +      + MGGGD+KLL     + GW  S    +   ++LG ++ +  + 
Sbjct: 173 FYLVALGYRLATGRDGMGGGDIKLLAMLGAFLGW-QSLPFIILASSLLGLVVGIGAMI 229


>gi|26987313|ref|NP_742738.1| hypothetical protein PP_0575 [Pseudomonas putida KT2440]
 gi|148545864|ref|YP_001265966.1| peptidase A24A, prepilin type IV [Pseudomonas putida F1]
 gi|24981961|gb|AAN66202.1|AE016248_5 conserved hypothetical protein [Pseudomonas putida KT2440]
 gi|148509922|gb|ABQ76782.1| peptidase A24A, prepilin type IV [Pseudomonas putida F1]
 gi|313496949|gb|ADR58315.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 156

 Score = 37.2 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 7/121 (5%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELIALHLLVGLIVFI 70
           ++    L   +  D+    I N +++   G  L   F  G  +     +       IV +
Sbjct: 4   IVLLLWLALCSEQDVRQRQISNVLTLGAAGCALAWLFSTGHSWIGAEASEAGWALAIVML 63

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           +    +     G  DVKL+ + A+          ++    I  G+  +  L  R     +
Sbjct: 64  LTLPGYMLGRFGADDVKLMGALALATSPQ-----YVLGTFIGAGVTVLVWLLTRRRLWTL 118

Query: 131 P 131
            
Sbjct: 119 L 119


>gi|229172044|ref|ZP_04299609.1| Peptidase A24A domain protein [Bacillus cereus MM3]
 gi|228611387|gb|EEK68644.1| Peptidase A24A domain protein [Bacillus cereus MM3]
          Length = 249

 Score = 37.2 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +     ++     + + + C        +GG
Sbjct: 122 VTDYIYMLIPNRILAWFACLLILECVFVPLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KLL+      G    F+              V I+  RM                 M
Sbjct: 182 GDIKLLSLLGFIVGLKGIFMILFLASCFSLCFFGVGIVLKRM----------------KM 225

Query: 144 KNKIPYGIAISMGGL 158
           +++IP+G  IS+G +
Sbjct: 226 RSQIPFGPFISLGAI 240


>gi|221194980|ref|ZP_03568036.1| peptidase, A24 (type IV prepilin peptidase) family [Atopobium rimae
           ATCC 49626]
 gi|221184883|gb|EEE17274.1| peptidase, A24 (type IV prepilin peptidase) family [Atopobium rimae
           ATCC 49626]
          Length = 180

 Score = 37.2 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 12/107 (11%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             +  A + D+ +  IP+ V +++   +++                  G ++   C    
Sbjct: 18  MVMGIATVCDIKTRTIPHEVPLLLGALWVIDVCSAAATPTKGWEMSAGGSLMRSACMLMA 77

Query: 77  AFN------------IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
                           +GGGD+K+L+S A+  G+    +      A+
Sbjct: 78  LLATSKFFILITKQAGIGGGDIKMLSSLALILGFEDLCVVIFSACAL 124


>gi|253995891|ref|YP_003047955.1| Prepilin peptidase [Methylotenera mobilis JLW8]
 gi|253982570|gb|ACT47428.1| Prepilin peptidase [Methylotenera mobilis JLW8]
          Length = 289

 Score = 37.2 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIIC 72
           I    L+     D  + ++P+ +++ +L   +L     G  D +   +  + G +V    
Sbjct: 141 IFALALITLTFIDFDTQLLPDDITLPLLWLGILFNLNSGFTDLKSSVIGAMAGYMVLWSV 200

Query: 73  FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           +  F        MG GD KLL +   WFGW     + +   + LG I+ + ++ +     
Sbjct: 201 YWLFKLIRGKEGMGYGDFKLLAAIGAWFGW-QLLPAVVLLSSTLGAIIGIALIVLTKRGK 259

Query: 129 HIPIF 133
            +P+ 
Sbjct: 260 EVPMP 264


>gi|158320911|ref|YP_001513418.1| peptidase A24A prepilin type IV [Alkaliphilus oremlandii OhILAs]
 gi|158141110|gb|ABW19422.1| peptidase A24A prepilin type IV [Alkaliphilus oremlandii OhILAs]
          Length = 174

 Score = 37.2 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
            L    + D+    IP+ + + +LGS +L    +G D   I   +LV   + ++   +  
Sbjct: 46  ILSVIMILDIRYLKIPDALIVFLLGSSILNVATVG-DINFIISRILVFFSISLLMIIYSL 104

Query: 78  FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
            + +GGGDVKL++  ++ FG+      F+  + +        IL 
Sbjct: 105 ISGVGGGDVKLISVLSLIFGFKEILCIFILSIILAAAASVFLILM 149


>gi|126665141|ref|ZP_01736124.1| Prepilin peptidase [Marinobacter sp. ELB17]
 gi|126630511|gb|EBA01126.1| Prepilin peptidase [Marinobacter sp. ELB17]
          Length = 291

 Score = 37.2 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 57/141 (40%), Gaps = 21/141 (14%)

Query: 26  DLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NI 80
           D  + ++P+ +++ +L    ++  F   + ++      +VG +     +  F        
Sbjct: 151 DFDTQLLPDSITLPLLWLGLMVNYFGQLVPFDEAFWGAIVGYLALWSVYWLFKLVTGKEG 210

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
           MG GD KLL +   W GWT    + +   +++G  + + ++  +     +P         
Sbjct: 211 MGYGDFKLLAALGAWLGWT-LLPAVILLSSVVGAAVGIALMVFKQQGREVP--------- 260

Query: 141 FLMKNKIPYGIAISMGGLISY 161
                 IP+G  ++  GL+  
Sbjct: 261 ------IPFGPYLATAGLMCL 275


>gi|262193752|ref|YP_003264961.1| peptidase A24A domain protein [Haliangium ochraceum DSM 14365]
 gi|262077099|gb|ACY13068.1| peptidase A24A domain protein [Haliangium ochraceum DSM 14365]
          Length = 320

 Score = 37.2 bits (85), Expect = 0.98,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            V     F LV  A  DL   +I ++++   +  F     LL   +    +   +G  V 
Sbjct: 130 VVLAAFAFVLVVIAFIDLDHRLILDKITYPGIPIFYGLGLLLERPWLDGLIGAALGYGVV 189

Query: 70  IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
            +    +        MG GD KLL      FGW  + L+ LF  +I+G +L +
Sbjct: 190 RLLADGYRLLTGREGMGYGDGKLLALIGALFGW-QAVLASLFLGSIIGSVLGI 241


>gi|145297498|ref|YP_001140339.1| type IV prepilin peptidase TapD [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|148887160|sp|A2T195|LEP4_AERS4 RecName: Full=Type 4 prepilin-like proteins leader
           peptide-processing enzyme; Includes: RecName:
           Full=Leader peptidase; AltName: Full=Prepilin peptidase;
           Includes: RecName: Full=N-methyltransferase
 gi|148887161|sp|P0C423|LEP4_AERSA RecName: Full=Type 4 prepilin-like proteins leader
           peptide-processing enzyme; Includes: RecName:
           Full=Leader peptidase; AltName: Full=Prepilin peptidase;
           Includes: RecName: Full=N-methyltransferase
 gi|3088559|gb|AAC23569.1| type IV prepilin peptidase TapD [Aeromonas salmonicida]
 gi|88866546|gb|ABD57323.1| TapD [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850270|gb|ABO88591.1| type IV prepilin peptidase TapD [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 291

 Score = 37.2 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + LV     DL   ++P+++++ ++ G  L       +      +  + G +V   
Sbjct: 139 LLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGYVPLGDAVIGAMAGYLVLWS 198

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W GW    +  L   +++G I  + ++ +R   
Sbjct: 199 LYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPI-VLLLSSLVGAIFGIGLILLRNHH 257

Query: 128 NHIPIF 133
              PI 
Sbjct: 258 QSKPIP 263


>gi|16800653|ref|NP_470921.1| hypothetical protein lin1585 [Listeria innocua Clip11262]
 gi|16414072|emb|CAC96816.1| comC [Listeria innocua Clip11262]
          Length = 236

 Score = 37.2 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 2/109 (1%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           L F  ++D+    +PN V I+     L            +    L+    +++ F  F  
Sbjct: 107 LAFFFVTDILYLHVPNSVMILFFLVLLTCYISFQQPAVSLIYSSLISNCFYLLFFILFRK 166

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
             +G GD+K+L   + + G+   ++ F   + +LG I+ +  L ++ + 
Sbjct: 167 G-IGLGDIKILIILSSFLGFEMGYIVFFLSI-VLGAIILLSALVLKKVE 213


>gi|225386961|ref|ZP_03756725.1| hypothetical protein CLOSTASPAR_00711 [Clostridium asparagiforme
           DSM 15981]
 gi|225046973|gb|EEG57219.1| hypothetical protein CLOSTASPAR_00711 [Clostridium asparagiforme
           DSM 15981]
          Length = 209

 Score = 37.2 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 51/169 (30%), Gaps = 36/169 (21%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL------- 66
           I    L   A  D  +  IPN ++++ L   ++   + GM        + V         
Sbjct: 6   IFMIYLAVCAGWDGRTRRIPNGLTVLGLAGGVMMVGMQGMWTAAGLHGVGVAAGLHGAEA 65

Query: 67  ----------------------------IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW 98
                                       I      C + F ++G GDVKL      W G+
Sbjct: 66  ADGLQGVQTATAVQAWAFAAMAAFGRAVIAVAAGMCLYRFRVIGAGDVKLAAVIVAWLGF 125

Query: 99  TPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKI 147
                  +F    LG + S+  L  R I      +     + +L   KI
Sbjct: 126 AEGGAG-IFAGLCLGAVWSLGRLARRRILWKRFSYLAGYVRDYLATGKI 173


>gi|66044051|ref|YP_233892.1| prepilin peptidase [Pseudomonas syringae pv. syringae B728a]
 gi|63254758|gb|AAY35854.1| Prepilin peptidase [Pseudomonas syringae pv. syringae B728a]
          Length = 290

 Score = 37.2 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 45  LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100
           ++ AF L           + G +     F  F        MG GD KLL     W GW  
Sbjct: 169 IVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQV 228

Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             L+ +   +++G +L V ++ VR + +  PI 
Sbjct: 229 LPLT-ILLSSLVGAVLGVIMMRVRRVESGTPIP 260


>gi|330960770|gb|EGH61030.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 290

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + L+  +L D    ++P+  V  ++    ++ +F L           + G 
Sbjct: 131 QAAAMLVLSWGLLAMSLIDTDHQLLPDSLVLPLLWLGLIVNSFRLFTSLSDALWGAVAGY 190

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     +  F        MG GD KLL     W GW    L+ +   +++G +L V ++ 
Sbjct: 191 LTLWSVYWLFKLITGKEGMGHGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249

Query: 123 VRMITNHIPIF 133
           +R + +  PI 
Sbjct: 250 IRRVESGTPIP 260


>gi|229160357|ref|ZP_04288355.1| Peptidase A24A domain protein [Bacillus cereus R309803]
 gi|228623081|gb|EEK79909.1| Peptidase A24A domain protein [Bacillus cereus R309803]
          Length = 249

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 22/138 (15%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--NIM 81
           ++DL   +IPNR  I++  +FL+T   + +        ++   I+FI+ +C        +
Sbjct: 122 VTDLVYMLIPNR--ILIWFAFLITLECIFVPLVTWIDSIVGSGIIFILLYCVRRIYPEGL 179

Query: 82  GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM-FVPKS 140
           GGGD+KLL           S L F+       G+  +FI+        +  FG+    K 
Sbjct: 180 GGGDIKLL-----------SLLGFIV------GVKGIFIILFLASCFSLCFFGIGIALKR 222

Query: 141 FLMKNKIPYGIAISMGGL 158
              +  IP+G  IS+G +
Sbjct: 223 IEARKPIPFGPFISLGAI 240


>gi|46907779|ref|YP_014168.1| type IV leader peptidase family protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093085|ref|ZP_00230862.1| type IV leader peptidase family protein [Listeria monocytogenes
           str. 4b H7858]
 gi|226224151|ref|YP_002758258.1| late competence protein ComC (type IV prepilin peptidase) [Listeria
           monocytogenes Clip81459]
 gi|254824391|ref|ZP_05229392.1| type IV leader peptidase [Listeria monocytogenes FSL J1-194]
 gi|254931490|ref|ZP_05264849.1| type IV leader peptidase [Listeria monocytogenes HPB2262]
 gi|46881048|gb|AAT04345.1| type IV leader peptidase family protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018525|gb|EAL09281.1| type IV leader peptidase family protein [Listeria monocytogenes
           str. 4b H7858]
 gi|225876613|emb|CAS05322.1| Putative late competence protein ComC (type IV prepilin peptidase)
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|293583042|gb|EFF95074.1| type IV leader peptidase [Listeria monocytogenes HPB2262]
 gi|293593626|gb|EFG01387.1| type IV leader peptidase [Listeria monocytogenes FSL J1-194]
 gi|332311992|gb|EGJ25087.1| Type IV leader peptidase family protein [Listeria monocytogenes
           str. Scott A]
          Length = 236

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 1/99 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            ++ I  F L F  ++D+F   +PN + IV      + A L            ++  + +
Sbjct: 98  LLYYIIYFFLAFFFITDIFYLYVPNSILIVFFCVLAIIAILYNQTLMDFIFSGVISCLFY 157

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108
           ++ F  F    +G GD+K+L   + + G+   +  F   
Sbjct: 158 LLFFIIFRKG-IGLGDIKILIILSTFLGFKIGYYIFFLA 195


>gi|167031636|ref|YP_001666867.1| peptidase A24A prepilin type IV [Pseudomonas putida GB-1]
 gi|166858124|gb|ABY96531.1| peptidase A24A prepilin type IV [Pseudomonas putida GB-1]
          Length = 156

 Score = 36.8 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 13/148 (8%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELIALHLLVGLIVFI 70
           ++    L   +  D+    I N +++ +    L+  F  G  +     +       IV +
Sbjct: 4   IVLLLWLALCSEQDVRQRQISNLLTLGVATCALIWLFATGHSWIGADASDAGWALAIVML 63

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           +    +     G  DVKL+ + A+          ++    I  G+  +  L  R     +
Sbjct: 64  LTLPGYMLGRFGADDVKLMGALALATSPQ-----YVLGTFIGAGVSVLVWLLTRRRLWTL 118

Query: 131 P------IFGMFVPKSFLMKNKIPYGIA 152
                         +    +  +PY +A
Sbjct: 119 LNPKVKKRLQALTEEMGDKQAFVPYVLA 146


>gi|312883953|ref|ZP_07743670.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368411|gb|EFP95946.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 289

 Score = 36.8 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFI 70
           LI  + L+     DL + ++P+++++ ++   +  +   +     +   L  + G +   
Sbjct: 134 LIFLYALITLLFIDLDTMLLPDQITLPLMWLGIALSLMEISPTSLQDSVLGAIFGYLSLW 193

Query: 71  ICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
             +  F        MG GD KLL +   W GW       +   +I+G  +++  L ++
Sbjct: 194 SVYWMFKLATGKEGMGYGDFKLLAALGAWLGW-QYLPMIILCSSIVGVFMAIIQLALK 250


>gi|30248611|ref|NP_840681.1| prepilin cysteine protease (C20), type IV [Nitrosomonas europaea
           ATCC 19718]
 gi|30180206|emb|CAD84508.1| Prepilin cysteine protease (C20), type IV [Nitrosomonas europaea
           ATCC 19718]
          Length = 286

 Score = 36.8 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 61/154 (39%), Gaps = 21/154 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
           L+  + ++     DL + ++P+ ++  +L + L+     G  D     +  + G +    
Sbjct: 135 LVFVWAMIVLTFIDLNTQLLPDSITQPLLWTGLIVNLNNGFTDVHSAVVGAVAGYLTLWS 194

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W GW    L  + F +++G ++   ++      
Sbjct: 195 VYWLFRLLTGKEGMGYGDFKLLAAIGAWLGWQLLPL-VILFSSVVGAVVGTVLI------ 247

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                    +         +P+G  ++ GGLI+ 
Sbjct: 248 ---------LSAGHSKNMTLPFGPYLAGGGLIAL 272


>gi|323486493|ref|ZP_08091816.1| hypothetical protein HMPREF9474_03567 [Clostridium symbiosum
           WAL-14163]
 gi|323400196|gb|EGA92571.1| hypothetical protein HMPREF9474_03567 [Clostridium symbiosum
           WAL-14163]
          Length = 180

 Score = 36.8 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 8/139 (5%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL--------IALHLLVGLIVFI 70
           L  +AL D     +PN + +    +F +  F+ G             IAL  +      I
Sbjct: 10  LTGSALCDFRKGRVPNVLILFGTAAFGIAGFIRGPSPGDGSGAVFTVIALFFIRTFFTVI 69

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           I F  F F +MG GD+K++   A + G         + +A        ++L   ++   I
Sbjct: 70  IFFPLFLFRMMGAGDIKVMAVIAGYMGMDRGVEIIFYGLAAAAVWSLFYMLKQHILAERI 129

Query: 131 PIFGMFVPKSFLMKNKIPY 149
             F  ++   F  +  +PY
Sbjct: 130 KYFLNYIKHLFQSEQILPY 148


>gi|146297619|ref|YP_001181390.1| peptidase A24A, prepilin type IV [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411195|gb|ABP68199.1| peptidase A24A, prepilin type IV [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 147

 Score = 36.8 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 4/103 (3%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M     +L+      + A +D  S +IPN   I +L + +    +  +D      HL + 
Sbjct: 1   MTIWIAYLVGCITCCWTAYTDYKSRIIPN---IAVLINIIAAILIFRIDLIKNG-HLWLA 56

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108
           L +F + F  + F ++G GDVKLL S  +  G+      F   
Sbjct: 57  LSLFAVMFIMWLFKLIGAGDVKLLFSLTLLLGYNAYIAIFFTL 99


>gi|186683080|ref|YP_001866276.1| peptidase A24A domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186465532|gb|ACC81333.1| peptidase A24A domain protein PilD [Nostoc punctiforme PCC 73102]
          Length = 296

 Score = 36.8 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 24/166 (14%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF--- 75
           L+  +L DL +  +PN ++   L + +L   ++G   E  ++ L+  L++ I+       
Sbjct: 114 LLALSLIDLDTMTLPNPLTQSGLVAGILFQMVVGYLSEGSSVALVNHLMIAILGAVLGLW 173

Query: 76  ------------FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
                       F    MG GD KL      W GW    L+     A+ G ++   I+  
Sbjct: 174 LFDAIALLGSIAFGKTAMGAGDAKLAAMMGAWLGWKYLLLATFIACAL-GALIGSAIIMH 232

Query: 124 RMITNHIPIFGMFVPK--------SFLMKNKIPYGIAISMGGLISY 161
           + I            +        +  +  K+P+G  +++G LI+ 
Sbjct: 233 KRILLGRSKLRTASGREATNEQTSTHRLGQKMPFGPFLALGSLITL 278


>gi|257095697|ref|YP_003169338.1| prepilin peptidase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257048221|gb|ACV37409.1| Prepilin peptidase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 286

 Score = 36.8 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGL 66
            +A  ++  +CL+     DL + ++P+ +++ +L    L   F    D     +    G 
Sbjct: 130 AAAGAMLLIWCLIALTCIDLDTLLLPDSITLPLLWAGLLFNLFGTFADLHSAVIGAASGY 189

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +   + +  F        MG GD KLL +   WFGW    L+ +   ++LG ++ + ++ 
Sbjct: 190 LSLWLVYWGFKLTTGKEGMGYGDFKLLAALGAWFGWQMLPLT-ILLSSLLGAVVGIAMIV 248

Query: 123 VRMITNHIPIF 133
           V      +PI 
Sbjct: 249 VAKRGRSVPIP 259


>gi|228984479|ref|ZP_04144656.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775182|gb|EEM23571.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 249

 Score = 36.8 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 4/116 (3%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +     ++     + + + C        +GG
Sbjct: 122 VTDYIYMLIPNRILAWFACLLILECAFVPLVTWTDSIVGSCVIFILLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135
           GDVKLL+      G    F+             G  L +  + +R      P   +
Sbjct: 182 GDVKLLSLLGFIMGLKGIFMIIFLASFFSLCFFGAGLVLKRMKMRTQIPFGPFISL 237


>gi|229154972|ref|ZP_04283086.1| Peptidase A24A domain protein [Bacillus cereus ATCC 4342]
 gi|228628530|gb|EEK85243.1| Peptidase A24A domain protein [Bacillus cereus ATCC 4342]
          Length = 249

 Score = 36.8 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 4/116 (3%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +     ++     + + + C        +GG
Sbjct: 122 VTDYIYMLIPNRILAWFACLLILECAFVPLVTWTDSIVGSCVIFILLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135
           GDVKLL+      G    F+             G  L +  + +R      P   +
Sbjct: 182 GDVKLLSLLGFIMGLKGIFMIIFLASFFSLCFFGAGLVLKRMKMRTQIPFGPFISL 237


>gi|167628384|ref|YP_001678883.1| peptidase a24a, prepilin type iv peptidase [Heliobacterium
           modesticaldum Ice1]
 gi|167591124|gb|ABZ82872.1| peptidase a24a, prepilin type iv peptidase [Heliobacterium
           modesticaldum Ice1]
          Length = 255

 Score = 36.8 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 23/149 (15%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLL-------TAFLLGMDYELIALHLLVGLIVFIIC 72
           +  A+ DL   +IPNRV      +  L       T    G+   L +L   V     +  
Sbjct: 107 IVIAVIDLQHKIIPNRVLGAAFVAIALRQAGKVWTGQDGGLALLLDSLAGGVFGAALLFA 166

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
             +F+   +G GDVK      +  GW P  L  +   A+ G ++ +  +           
Sbjct: 167 VFWFSKGGLGLGDVKFAFVFGLLLGW-PGALWAITLSALCGSVVGLAGIASGR------- 218

Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                   +  K++IP+G  ++ G    Y
Sbjct: 219 --------WTGKSQIPFGPFLAFGYFTVY 239


>gi|271501345|ref|YP_003334370.1| Prepilin peptidase [Dickeya dadantii Ech586]
 gi|270344900|gb|ACZ77665.1| Prepilin peptidase [Dickeya dadantii Ech586]
          Length = 283

 Score = 36.8 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 3   ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALH 61
           +  M      L     L  A + D  + ++P+ +++ +L    L       +  E   + 
Sbjct: 127 QPGMALLGALLCISMLLALA-VIDARTQLLPDVMTLPLLWCGLLFNLADTFVPLEQAVIG 185

Query: 62  LLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
            + G +   + +  F        +G GD KLL +   W GW  +  + +   ++ G + +
Sbjct: 186 AMAGYLSLWLIYWGFRLLSGREALGYGDFKLLAALGAWLGW-QALPNLVLIASLTGLVAT 244

Query: 118 VFILTVRMITNHIPIF 133
           +    +R I    P+ 
Sbjct: 245 LLWRRIRRINMQQPLA 260


>gi|332976660|gb|EGK13500.1| leader peptidase (prepilin peptidase)/N-methyltransferase
           [Psychrobacter sp. 1501(2011)]
          Length = 301

 Score = 36.8 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 8/137 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVG 65
           + + + LI  + LV  A  D  S  +P++++  +      + +  + +        LL+G
Sbjct: 146 LQAVIALIFVWTLVGLAGIDWISQYLPDKLTFPLAALGLAINSEAIFVTPTQSIWGLLLG 205

Query: 66  LIVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF-LFFVAILGGILSVFI 120
            +       + + F     MG GD KLL     W G  P  L F +   ++LG I+ + +
Sbjct: 206 YLSLWTVVKVFYIFTKKQGMGQGDFKLLAVIGAWLG--PMMLPFVILLSSLLGSIIGIIL 263

Query: 121 LTVRMITNHIPIFGMFV 137
           +  R  +          
Sbjct: 264 MHHRAESRPFAFGPYLA 280


>gi|325273278|ref|ZP_08139556.1| prepilin peptidase [Pseudomonas sp. TJI-51]
 gi|324101609|gb|EGB99177.1| prepilin peptidase [Pseudomonas sp. TJI-51]
          Length = 283

 Score = 36.8 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGL 66
            + + L   +CL+  +L D    ++P+ + + ++    ++ AF + +         + G 
Sbjct: 125 EALLALPLTWCLLALSLIDADHQLLPDVLVLPMLWLGLIVNAFAVYVPLGSAVWGAVAGY 184

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     +  F        MG GD KL+     W GW    L+ L   +++G ++ + +L 
Sbjct: 185 LCLWSVYWLFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLL-SSVVGALVGLCLLH 243

Query: 123 VRMITNHIPIF 133
           +        + 
Sbjct: 244 LHRHALGAAMP 254


>gi|89901675|ref|YP_524146.1| prepilin peptidase [Rhodoferax ferrireducens T118]
 gi|89346412|gb|ABD70615.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Rhodoferax ferrireducens T118]
          Length = 280

 Score = 36.8 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66
           + V+      ++     D  + ++P+ +++ +L + L+ A L    +         + G 
Sbjct: 125 ALVWCGFGATMLALGCIDWDTTLLPDDITLPLLWAGLIAAALQWTPVALPEALWGAVAGY 184

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           +   + +  F        MG GD KL  +   WFGW  + +  +   +++G ++ + +
Sbjct: 185 VSLWLVYWAFKLVTGKEGMGFGDFKLFAALGAWFGW-QALVPIILMASVIGAVIGIAM 241


>gi|62181946|ref|YP_218363.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62129579|gb|AAX67282.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322716433|gb|EFZ08004.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 197

 Score = 36.8 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 11/135 (8%)

Query: 10  AVFLIPPFCLVFAALS------DLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHL 62
            +F+  PF + +A+ S      D  + ++P+R    ++ G  L     L           
Sbjct: 42  LMFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGA 101

Query: 63  LVGLIVFIICFCFFAFNI----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
           + G   F + +  +        +G GDVK L +   W  W    L       +  G   V
Sbjct: 102 IAGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGV 161

Query: 119 FILTVRMITNHIPIF 133
            +L         P+ 
Sbjct: 162 ALLVRGKSALINPLP 176


>gi|20093290|ref|NP_619365.1| hypothetical protein MA4505 [Methanosarcina acetivorans C2A]
 gi|19918646|gb|AAM07845.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 264

 Score = 36.8 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 8/138 (5%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRV---SIVMLGSFLLTAFLLGMDYELIALHL 62
           M+           L++++  DL +  +PNR+    +  L  FL+   + G    ++ L +
Sbjct: 1   MIEVLKLAACLPFLLYSSYLDLETRRVPNRIWKLMLFSLSGFLIYEIVEGGILFMLQL-V 59

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG----GILSV 118
                 F + +  F   + GG D K L          P    + +   +LG    G+ S+
Sbjct: 60  FSFFSSFFLAYLLFRLRVFGGADAKALIVIGTLVPVYPVLDFYGYTFPLLGFPPVGLFSL 119

Query: 119 FILTVRMITNHIPIFGMF 136
            +L   ++   I   G+F
Sbjct: 120 TVLENSVLLTAIIPLGIF 137


>gi|50122021|ref|YP_051188.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Pectobacterium atrosepticum SCRI1043]
 gi|49612547|emb|CAG75997.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Pectobacterium atrosepticum SCRI1043]
          Length = 282

 Score = 36.8 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 24  LSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN--- 79
           + D+ + ++P+ +++ +L    L       +      +  + G +   + +  F +    
Sbjct: 149 VIDIKTLLLPDVLTLSLLWVGLLFNLSETFVPVGDAVVGAMAGYLSLWLLYWVFKYATGK 208

Query: 80  -IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             +G GD KLL +   W GW  +  + +   A+ G ++++    +R      P+ 
Sbjct: 209 EALGYGDFKLLAALGAWLGW-QALPNLVLVAALSGLVVTLVWRGLRKEDTAKPLA 262


>gi|206977561|ref|ZP_03238455.1| late competence protein comC [Bacillus cereus H3081.97]
 gi|222095039|ref|YP_002529099.1| late competence protein comc [Bacillus cereus Q1]
 gi|206744279|gb|EDZ55692.1| late competence protein comC [Bacillus cereus H3081.97]
 gi|221239097|gb|ACM11807.1| late competence protein comC [Bacillus cereus Q1]
          Length = 240

 Score = 36.8 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 4/129 (3%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           + L     L+  +++D    +IPNR+        +L    + +   + ++     + + +
Sbjct: 100 IVLSLFALLLIISVTDYIYMLIPNRILAWFACLLILECAFIPLVTWIDSIVGSCVIFILL 159

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMI 126
            C        +GGGD+KLL+      G    F+             G  L +  + +R  
Sbjct: 160 YCMQKIYPEGLGGGDIKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKRMKMRTQ 219

Query: 127 TNHIPIFGM 135
               P   +
Sbjct: 220 IPFGPFISL 228


>gi|323694366|ref|ZP_08108539.1| hypothetical protein HMPREF9475_03403 [Clostridium symbiosum
           WAL-14673]
 gi|323501606|gb|EGB17495.1| hypothetical protein HMPREF9475_03403 [Clostridium symbiosum
           WAL-14673]
          Length = 180

 Score = 36.4 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 8/139 (5%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL--------IALHLLVGLIVFI 70
           L  +AL D     +PN + +    +F +  F+ G             IAL  +      I
Sbjct: 10  LTGSALCDFRKGRVPNVLILFGTAAFGIAGFIRGPSPGDGSGAVFTVIALFFIRTFFTVI 69

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           I F  F F +MG GD+K++   A + G         + +A        ++L   ++   I
Sbjct: 70  IFFPLFLFRMMGAGDIKVMAVIAGYMGMDRGVEIIFYGLAAAAVWSLFYMLKQHILAERI 129

Query: 131 PIFGMFVPKSFLMKNKIPY 149
             F  ++   F  +  +PY
Sbjct: 130 KYFLNYIKHLFQSEQILPY 148


>gi|89068026|ref|ZP_01155443.1| hypothetical protein OG2516_07592 [Oceanicola granulosus HTCC2516]
 gi|89046265|gb|EAR52322.1| hypothetical protein OG2516_07592 [Oceanicola granulosus HTCC2516]
          Length = 161

 Score = 36.4 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 1/134 (0%)

Query: 21  FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80
           + A +DL    I N     +L  F +   ++ +             +V ++    +A  +
Sbjct: 20  YVAWTDLARMKITNVAVGALLVVFAVVGAMV-LPLPDYLWRWAHFALVLVVALALYAGGL 78

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
            GGGD K L + A +          +     +    +   L        +          
Sbjct: 79  FGGGDAKFLAAAAPYVALADLSSMLILLSGFMLAAYAAHRLARASALRRLAPGWESWTSG 138

Query: 141 FLMKNKIPYGIAIS 154
                 +P+G A++
Sbjct: 139 RRFPMGLPFGGALA 152


>gi|269118883|ref|YP_003307060.1| peptidase A24A domain protein [Sebaldella termitidis ATCC 33386]
 gi|268612761|gb|ACZ07129.1| peptidase A24A domain protein [Sebaldella termitidis ATCC 33386]
          Length = 239

 Score = 36.4 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLVGLIVFIICFCF 75
            L+ A+  D+ + +IP+R  I++L +  L + L      + L A    + +++      F
Sbjct: 104 ILLAASFIDIETHIIPDRFFIILLITGFLYSVLRNNPENWFLGAASYGLPVLLLYSASDF 163

Query: 76  FAFNIMGGGDVKLLTSTA--VWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
               I+G GDVKL+ +    + +    + L F   + I  GI S F++  R  T
Sbjct: 164 INKEIIGFGDVKLICAAGGFISYSGLKNLLWFYEILYISAGIFSFFLIFFRKRT 217


>gi|157362877|ref|YP_001469644.1| peptidase A24A domain-containing protein [Thermotoga lettingae TMO]
 gi|157313481|gb|ABV32580.1| peptidase A24A domain protein [Thermotoga lettingae TMO]
          Length = 240

 Score = 36.4 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 3/116 (2%)

Query: 4   SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
           S  +      I    ++  +L DL   +IP+   +++     +   + G   EL+ L  +
Sbjct: 94  SNFLEFIALSIILSSVIVLSLIDLQFMLIPDITLLLIGAGSFVLWIVRG--AELLNLVAV 151

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
             + V +I         MG GD+ L+ + ++  G T S  S L F ++ G I ++ 
Sbjct: 152 GLVTVLLIVLSLLYKGGMGSGDILLMAAMSLSLGITGSLYS-LVFASLSGIIYALI 206


>gi|47096714|ref|ZP_00234299.1| type IV leader peptidase family protein [Listeria monocytogenes
           str. 1/2a F6854]
 gi|254898283|ref|ZP_05258207.1| hypothetical protein LmonJ_00670 [Listeria monocytogenes J0161]
 gi|254912224|ref|ZP_05262236.1| type IV leader peptidase family protein [Listeria monocytogenes
           J2818]
 gi|254936552|ref|ZP_05268249.1| type IV leader peptidase [Listeria monocytogenes F6900]
 gi|47014898|gb|EAL05846.1| type IV leader peptidase family protein [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258609146|gb|EEW21754.1| type IV leader peptidase [Listeria monocytogenes F6900]
 gi|293590198|gb|EFF98532.1| type IV leader peptidase family protein [Listeria monocytogenes
           J2818]
          Length = 236

 Score = 36.4 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 2/117 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            ++ I  + L F  ++D+F   +PN + IV      + A L       +     +  + +
Sbjct: 98  LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLAIIATLYNQTLMALIYSGGISCLFY 157

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
           ++ F  F    +G GD+K+L   + + G+   +  F   + I+G I+ +  L ++ +
Sbjct: 158 LLFFIIFRKG-IGLGDIKILIILSTFLGFKIGYYIFFLAI-IMGTIILLTALMLKKV 212


>gi|85860185|ref|YP_462387.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Syntrophus aciditrophicus SB]
 gi|85723276|gb|ABC78219.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Syntrophus aciditrophicus SB]
          Length = 258

 Score = 36.4 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           I    L+     D+   +IP+ +S+  +   FL+  F++ + +    L LL+G     + 
Sbjct: 107 IFVSALILITFIDIDYQIIPDVISLPGIPICFLMAVFIMDLSFMDALLGLLIGGGSLYLV 166

Query: 73  FCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
              +        MGGGD+KLL     + GW  S L  L   +++G ++ + I+  R    
Sbjct: 167 AVLYELATKREGMGGGDIKLLALMGAFLGW-KSLLFILLVSSLVGAVVGISIMLARGGDM 225

Query: 129 HIPIF 133
              + 
Sbjct: 226 KYAVP 230


>gi|71082774|ref|YP_265493.1| type II secretion PilD [Candidatus Pelagibacter ubique HTCC1062]
 gi|71061887|gb|AAZ20890.1| Type II Secretion PilD [Candidatus Pelagibacter ubique HTCC1062]
          Length = 254

 Score = 36.4 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLL 63
           + + +F I   C V     DL   +IPN ++  ++   LL +F   ++   +  +   L+
Sbjct: 95  LTTLLFFILSICFVIIFFIDLKHFIIPNELTYPLMIIGLLKSFDPNLNTTLFPNLVNSLI 154

Query: 64  VGLIVFIICFCFFAF-------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
            GL  +II +              MG GD KLL+    WFGW  + + F+ F + +  +L
Sbjct: 155 GGLFGYIIIWLIIFIYKKLRNKEGMGLGDAKLLSVIGFWFGW--ASIPFVIFFSSVIALL 212

Query: 117 SVF 119
           SV 
Sbjct: 213 SVV 215


>gi|266621099|ref|ZP_06114034.1| peptidase A24A, prepilin type IV [Clostridium hathewayi DSM 13479]
 gi|288867255|gb|EFC99553.1| peptidase A24A, prepilin type IV [Clostridium hathewayi DSM 13479]
          Length = 174

 Score = 36.4 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNR-VSIVMLGSFLLTAFLLGMD------YELIALHLLVG 65
           +I    L   A  D+    IPN  V++  +   LL+    G         +   L L   
Sbjct: 1   MILLLVLAAGAYYDVREHRIPNWWVAVSAVCGILLSMVESGAPPGPAAYLKECGLFLARM 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
           L V  + F  F   ++G GD+KL      + G+    
Sbjct: 61  LTVSALFFPLFICRMIGAGDIKLAALICGYSGFAGGA 97


>gi|47566191|ref|ZP_00237219.1| prepilin peptidase, type IV [Bacillus cereus G9241]
 gi|47556744|gb|EAL15075.1| prepilin peptidase, type IV [Bacillus cereus G9241]
          Length = 240

 Score = 36.4 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 4/116 (3%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +     ++     + + + C        +GG
Sbjct: 113 VTDYIYMLIPNRILAWFACLLILECAFVPLVTWTDSIVGSCVIFILLYCMQKIYPEGLGG 172

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135
           GDVKLL+      G    F+             G  L +  + +R      P   +
Sbjct: 173 GDVKLLSLLGFIMGLKGIFMIIFLASFFSLCFFGAGLVLKRMKMRTQIPFGPFISL 228


>gi|45358118|ref|NP_987675.1| preflagellin peptidase [Methanococcus maripaludis S2]
 gi|18042217|gb|AAL57886.1|AF455758_1 flagella related protein FlaK [Methanococcus maripaludis]
 gi|44920875|emb|CAF30111.1| Preflagellin peptidase [Methanococcus maripaludis S2]
          Length = 230

 Score = 36.4 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL---HLLVGLIV 68
          ++I    L+ A++ D  S  I + + IV+    +L A    +     ++    +   +I 
Sbjct: 4  YIIGVIGLLLASVQDFRSREIEDYIWIVLAVFGILFAIYSAITLSNYSILINSISGFVIC 63

Query: 69 FIICFCFFAFNIMGGGDVKLL 89
          FI+ +  F    +GGGD K+L
Sbjct: 64 FILGYMMFLSG-IGGGDGKIL 83


>gi|267995651|gb|ACY90536.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|323131800|gb|ADX19230.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 197

 Score = 36.4 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 11/135 (8%)

Query: 10  AVFLIPPFCLVFAALS------DLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHL 62
            +F+  PF + +A+ S      D  + ++P+R    ++ G  L     L           
Sbjct: 42  LMFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGA 101

Query: 63  LVGLIVFIICFCFFAFNI----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
           + G   F + +  +        +G GDVK L +   W  W    L       +  G   V
Sbjct: 102 IAGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGV 161

Query: 119 FILTVRMITNHIPIF 133
            +L         P+ 
Sbjct: 162 ALLVRGKSALINPLP 176


>gi|239624660|ref|ZP_04667691.1| peptidase A24A domain-containing protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521046|gb|EEQ60912.1| peptidase A24A domain-containing protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 252

 Score = 36.4 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 32/90 (35%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
            + +  +    L   AL D     IP+ +S+ +L     +  +         +   V   
Sbjct: 99  EAVIMCLFGSLLTVGALIDARHMYIPDGISLSILVLAAGSLMIAPRPGLAGRIAGAVICG 158

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFG 97
            F+          +G GD KL+ S+ +  G
Sbjct: 159 GFLALLRVLTKGGIGLGDAKLMASSGLLLG 188


>gi|90416349|ref|ZP_01224281.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [marine gamma proteobacterium HTCC2207]
 gi|90332074|gb|EAS47288.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [marine gamma proteobacterium HTCC2207]
          Length = 299

 Score = 36.4 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVG 65
           + +A  L+  + L+     D    ++P+++++ +L            +      +  L G
Sbjct: 140 LMAAYCLMFTWVLIALTGIDFREQLLPDQITLPLLWLGLFANLNGTFVPLNEAVVGALAG 199

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     F  F        MG GD KLL +   W GW    L  +     +G ++ V  L
Sbjct: 200 YLSLWSVFWLFKLITGKEGMGYGDFKLLAALGAWMGWQMLPL-IIILSTFVGALVGVAGL 258

Query: 122 TVRMITNHIPIF 133
            +      +P+ 
Sbjct: 259 LMNTRERQVPMA 270


>gi|171463003|ref|YP_001797116.1| peptidase A24A prepilin type IV [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192541|gb|ACB43502.1| peptidase A24A prepilin type IV [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 166

 Score = 36.4 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 9/111 (8%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
             LV+ A  DL +  +P+ +++ ++ + LL   L    +      +   ++ +   +   
Sbjct: 16  MVLVYLAYFDLRTFRLPDAITLPLILAALLFNGLSKDGFISFQDSIAGAILGYASLWLLN 75

Query: 77  AF-------NIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSV 118
                      +G GD KLL +   W GW   PS L       ++GG++ +
Sbjct: 76  FLYRILKKEGGIGMGDAKLLAALGAWLGWFALPSILLLASITGLIGGLIWL 126


>gi|198282505|ref|YP_002218826.1| peptidase A24A domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665857|ref|YP_002424695.1| type IV pilus prepilin peptidase PilD [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247026|gb|ACH82619.1| peptidase A24A domain protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518070|gb|ACK78656.1| type IV pilus prepilin peptidase PilD [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 266

 Score = 36.0 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 12/133 (9%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVS-------IVMLGSFLLTAFLLGMDYELIALHLLVG 65
           L+  + L+   + DL + ++P+R++       +++ GS L    L  +      L +++G
Sbjct: 108 LVFTWALLALTMIDLETQLLPDRLTKPGMLAGLLLNGSALFWPGLALVTPLDALLGMIIG 167

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
                +    +      + MGGGD+KLL     W GW   FL+ LF  A+ GG++++  L
Sbjct: 168 YGSLWLLATVYYRIAGRHGMGGGDLKLLGMIGAWLGWQAVFLT-LFIAALGGGLVALGFL 226

Query: 122 TVRMITNHIPIFG 134
                 ++   FG
Sbjct: 227 LGGKGRDYAMPFG 239


>gi|121534458|ref|ZP_01666281.1| peptidase A24A domain protein [Thermosinus carboxydivorans Nor1]
 gi|121306951|gb|EAX47870.1| peptidase A24A domain protein [Thermosinus carboxydivorans Nor1]
          Length = 249

 Score = 36.0 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 1/113 (0%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           LI    L+  A  D    +I ++V I + G+ +     LG       +   +     ++ 
Sbjct: 101 LIFISFLIVVAFIDYDHQLILDKVLIWLGGAGVFINLGLGFTGLTDMIAGSLLGGGLLLV 160

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
               +   MGGGD+K      +W GW    L  LF   +LGG+  + +LT++ 
Sbjct: 161 IAIASRGGMGGGDIKFAACLGLWLGW-KLTLLALFLSFLLGGVGGIVLLTLKR 212


>gi|218779098|ref|YP_002430416.1| peptidase A24A domain protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760482|gb|ACL02948.1| Peptidase A24A domain protein (type IV prepilin-like leader
           peptidase (prepilin FT peptidase / N-methyltransferase)
           [Desulfatibacillum alkenivorans AK-01]
          Length = 266

 Score = 36.0 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 20/157 (12%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGL 66
            + V+ +    L+     DL   +IPN +++  +      +  L  +      + + VG 
Sbjct: 105 AALVYYLLIATLLVITFIDLDHMIIPNIITLPGIPIGIAASFLLPELSLAQSLIGVAVGG 164

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
                    F        MG GDVKLL     +FG      + +   A +G  + + ++ 
Sbjct: 165 GGLFAVSELFYLLRKKEGMGMGDVKLLGMLGAFFGVKGVLFT-IMAGAFVGTFVGLILI- 222

Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
                         + +S  +  +IP+G  ++ G ++
Sbjct: 223 -------------PLNRSKGLDLRIPFGPFLASGAIV 246


>gi|325981147|ref|YP_004293549.1| prepilin peptidase [Nitrosomonas sp. AL212]
 gi|325530666|gb|ADZ25387.1| Prepilin peptidase [Nitrosomonas sp. AL212]
          Length = 287

 Score = 36.0 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 21/160 (13%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
           + +   LI  + L+   + DL + ++P+ +++ +L   LL        D +   +   VG
Sbjct: 130 LITIAALIFVWALITLTVIDLNTQLLPDDITLPLLWLGLLVNINNSFTDIQSAVIGAAVG 189

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL++   W GW+   L  + F +++G I+ + ++
Sbjct: 190 YLSLWSIYWCFKLITGKEGMGFGDFKLLSAIGAWLGWSMLPL-VILFSSLVGAIVGIGMI 248

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
               +  +IP               IP+G  ++ G LI+ 
Sbjct: 249 VAAKLNKNIP---------------IPFGPYLAGGALIAL 273


>gi|307265050|ref|ZP_07546611.1| peptidase A24A prepilin type IV [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920035|gb|EFN50248.1| peptidase A24A prepilin type IV [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 130

 Score = 36.0 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    L FAA  D+    +       +L    +  FL    Y  +  +L   L+VF + 
Sbjct: 4   IVILIILFFAAAEDIKKMEVGYIYPTSILILSFVNFFLK--PYMSLKFYLFNSLLVFAVL 61

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
           F F+    +GGGDVK+LT+ + + G+       L F +I+  + S+ +   +     IP 
Sbjct: 62  FLFWLLGGIGGGDVKVLTTLSFYAGFK--IWVILLFSSIIFLVYSLILRKFKTRLPFIPA 119

Query: 133 FGM 135
             +
Sbjct: 120 VAI 122


>gi|1170761|sp|P45794|LEP4_AERHY RecName: Full=Type 4 prepilin-like proteins leader
           peptide-processing enzyme; Includes: RecName:
           Full=Leader peptidase; AltName: Full=Prepilin peptidase;
           Includes: RecName: Full=N-methyltransferase
 gi|663118|gb|AAC43998.1| TapD [Aeromonas hydrophila]
 gi|1588985|prf||2209417D leader peptidase IV
          Length = 290

 Score = 36.0 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
           L+  + LV     DL   ++P+++++ +L   LL   L G        +  + G +V   
Sbjct: 138 LLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGYLVLWS 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W GW    +  L   +++G  + + ++ +R   
Sbjct: 198 LYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPI-VLLLSSLVGAFMGIGLILLRNHH 256

Query: 128 NHIPIF 133
              PI 
Sbjct: 257 QSKPIP 262


>gi|310779614|ref|YP_003967947.1| peptidase A24A domain protein [Ilyobacter polytropus DSM 2926]
 gi|309748937|gb|ADO83599.1| peptidase A24A domain protein [Ilyobacter polytropus DSM 2926]
          Length = 245

 Score = 36.0 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 19/159 (11%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +++A  +I    LV A+  D     IP+R ++ +L      +F  G+  E   +      
Sbjct: 96  IWTAELIIAASILVIASGIDWEHYYIPDRFTLGLLLLGYGFSFFNGVGIERSFMGSAAYG 155

Query: 67  IVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVFIL 121
            +F++ +      F   ++G GDVKL        G+   + +      + + G +    L
Sbjct: 156 FLFVMIYGYGERLFKKEVLGFGDVKLAAGIGSIVGYLGFYRMHLFITTSFVAGAVYGIYL 215

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                          + K    K ++P+G  I+ GG+IS
Sbjct: 216 I--------------ITKKKDRKAEVPFGPFIAFGGIIS 240


>gi|163939212|ref|YP_001644096.1| peptidase A24A domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163861409|gb|ABY42468.1| peptidase A24A domain protein [Bacillus weihenstephanensis KBAB4]
          Length = 249

 Score = 36.0 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++DL   +IPN + I      +L    + +     ++     + + + C        +GG
Sbjct: 122 VTDLVYMLIPNCILIWFALLLILECIFVPLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KLL+      G    F+                I+  RM                  
Sbjct: 182 GDIKLLSLLGFIVGLKGIFMILFLASCFSLCFFGAGIVLKRM----------------KK 225

Query: 144 KNKIPYGIAISMGGL 158
           +++IP+G  IS+G +
Sbjct: 226 RSQIPFGPFISLGAI 240


>gi|87308904|ref|ZP_01091042.1| hypothetical protein DSM3645_19143 [Blastopirellula marina DSM
           3645]
 gi|87288247|gb|EAQ80143.1| hypothetical protein DSM3645_19143 [Blastopirellula marina DSM
           3645]
          Length = 178

 Score = 36.0 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 11/155 (7%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
              ++       A   DL S  +PN +++  +L   L  + + G  +  +   LL  L+ 
Sbjct: 7   VAIILVALFTAIAFYVDLTSGKLPNWLTMPALLIGLLFQSAVNG--WGGLQHALLGALVG 64

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           F++ F  F     GGGDVK + +   WFG     L F    A+L  I+++ I   +M+  
Sbjct: 65  FVLLFILFIIGGGGGGDVKFMAALGAWFGPILILLVF-VASAVLALIITIAIFVGKMMFR 123

Query: 129 HIPIFGMFVP-------KSFLMKNKIPYGIAISMG 156
                            K  + +  IPYG+ + + 
Sbjct: 124 AKSDNAEPGETGDSTQKKLDIARQTIPYGVPVCLA 158


>gi|77456867|ref|YP_346372.1| peptidase A24A, prepilin type IV [Pseudomonas fluorescens Pf0-1]
 gi|77380870|gb|ABA72383.1| putative membrane protein [Pseudomonas fluorescens Pf0-1]
          Length = 156

 Score = 36.0 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELIALHLLVGLIVFIICFCFF 76
           L   A  D     I N +++ +    L+   + G  +     A      L+   +    +
Sbjct: 10  LTLCAAQDARERHIGNGLTLGVGALALVWLLVTGSTWLGADAAQGGWAVLLALALTLPGY 69

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
               MGGGDVKL+T+ A+         +F+
Sbjct: 70  LLGRMGGGDVKLMTALALATDGQHLLGAFI 99


>gi|229138091|ref|ZP_04266689.1| Peptidase A24A domain protein [Bacillus cereus BDRD-ST26]
 gi|228645436|gb|EEL01670.1| Peptidase A24A domain protein [Bacillus cereus BDRD-ST26]
          Length = 249

 Score = 36.0 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 4/116 (3%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +   + ++     + + + C        +GG
Sbjct: 122 VTDYIYMLIPNRILAWFACLLILECAFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135
           GDVKLL+      G    F+             G  L +  + +R      P   +
Sbjct: 182 GDVKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKRMKMRTQIPFGPFISL 237


>gi|229029075|ref|ZP_04185174.1| Peptidase A24A domain protein [Bacillus cereus AH1271]
 gi|228732355|gb|EEL83238.1| Peptidase A24A domain protein [Bacillus cereus AH1271]
          Length = 249

 Score = 36.0 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +     + +     ++     + + + C        +GG
Sbjct: 122 VTDYIYMLIPNRILAWFACLLIFECIFVPLVTWTDSIVGSGVIFILLHCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KLL+      G    F+              V I+  RM                 M
Sbjct: 182 GDIKLLSLLGFIAGLKGIFMILFLASCFSLCFFGVGIVLKRM----------------KM 225

Query: 144 KNKIPYGIAISMGGL 158
           +++IP+G  IS+G +
Sbjct: 226 RSQIPFGPFISLGAI 240


>gi|313125036|ref|YP_004035300.1| leader peptidase family protein [Halogeometricum borinquense DSM
           11551]
 gi|312291401|gb|ADQ65861.1| leader peptidase family protein [Halogeometricum borinquense DSM
           11551]
          Length = 319

 Score = 36.0 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 9/102 (8%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPN--RVSIVMLGSFLLTA---FLLGMDYELIALHLLV 64
              +I P  L +AA  D+ +  +P+     +V LG  LL       L    E I   + V
Sbjct: 9   LRLVIVPV-LGWAAWQDIETRRVPSVIWYPLVALGVVLLAWDTLPHLAFAPEDILYFVRV 67

Query: 65  GLIVFIIC---FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL 103
           G+ +  +    + F+     GG D K L + ++     P +L
Sbjct: 68  GISLLFVAPLSYIFWRLGGFGGADAKALITISILVPTFPQYL 109


>gi|65318672|ref|ZP_00391631.1| COG1989: Type II secretory pathway, prepilin signal peptidase PulO
           and related peptidases [Bacillus anthracis str. A2012]
 gi|228926435|ref|ZP_04089507.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932686|ref|ZP_04095559.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945003|ref|ZP_04107364.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229120944|ref|ZP_04250186.1| Peptidase A24A domain protein [Bacillus cereus 95/8201]
 gi|228662604|gb|EEL18202.1| Peptidase A24A domain protein [Bacillus cereus 95/8201]
 gi|228814672|gb|EEM60932.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826944|gb|EEM72705.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833259|gb|EEM78824.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 249

 Score = 36.0 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +     ++     + + + C        +GG
Sbjct: 122 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KLL+                    I G      IL +    +        V K   M
Sbjct: 182 GDIKLLSLLGF----------------IAGLKGVFMILFLSSFFSLCFFGAGLVLKRMKM 225

Query: 144 KNKIPYGIAISMGGL 158
           + +IP+G  IS+G +
Sbjct: 226 RTQIPFGPFISLGAI 240


>gi|315618952|gb|EFU99535.1| type 4 prepilin-like proteins leader peptide-processing enzyme
           [Escherichia coli 3431]
          Length = 225

 Score = 36.0 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 9/140 (6%)

Query: 5   KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLL 63
            +V  A+FL   F L   ++ D  + ++P+++++ +L   F+  A    +D        +
Sbjct: 74  PIVTGALFLYFCFVLTL-SVIDFRTQLLPDKLTLPLLWLGFVFNAQYGLIDLHDAVYGAV 132

Query: 64  VGLIVFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI-LSV 118
            G  V    +           +G GD KLL +   W GW    L  +  +A LGGI  ++
Sbjct: 133 AGYGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGW--QTLPMILLIASLGGIGYAI 190

Query: 119 FILTVRMITNHIPIFGMFVP 138
               ++  T     FG ++ 
Sbjct: 191 VSQLLQRRTITTIAFGPWLA 210


>gi|121603679|ref|YP_981008.1| prepilin peptidase [Polaromonas naphthalenivorans CJ2]
 gi|120592648|gb|ABM36087.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Polaromonas naphthalenivorans CJ2]
          Length = 283

 Score = 36.0 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYELIALHLLVGLIVFII 71
               L+  A+ D  + ++P+ +++ +L + L+ A L     +         + G +   +
Sbjct: 133 FSAVLLALAMIDWDTTLLPDDMTLPLLWTGLIAAALQWNPAVSLSAALWGAVAGYLSLWL 192

Query: 72  CFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
            +  F        MG GD KL  +   WFGW P+ +  +   +++G I+ + +
Sbjct: 193 VYWAFKLATGKEGMGYGDFKLFAALGAWFGW-PALVPMILMASVIGAIIGIAM 244


>gi|332526518|ref|ZP_08402630.1| prepilin peptidase [Rubrivivax benzoatilyticus JA2]
 gi|332110786|gb|EGJ10963.1| prepilin peptidase [Rubrivivax benzoatilyticus JA2]
          Length = 316

 Score = 36.0 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 60/143 (41%), Gaps = 23/143 (16%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF------- 78
           D  + ++P+ +++ +L + L+ A L  +  + +A  +    + ++  +  +         
Sbjct: 176 DWDTTVLPDGMTLPLLWAGLVAAALGWLPGQTLADAIAGAAVGYLSLWSVYWLFKLATGK 235

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
             MG GD KLL +   W GW  + +  +   +++G ++ +               GM   
Sbjct: 236 EGMGYGDFKLLAALGAWLGW-QAIVPIVLMASVIGAVVGL---------------GMKAT 279

Query: 139 KSFLMKNKIPYGIAISMGGLISY 161
            S      +P+G  ++ GGL+  
Sbjct: 280 GSLREGRFVPFGPFLAGGGLVVL 302


>gi|167919052|ref|ZP_02506143.1| hypothetical protein BpseBC_10895 [Burkholderia pseudomallei
           BCC215]
          Length = 106

 Score = 36.0 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+  + L   AL+DL +  +      ++   +   A          A H  +G   F + 
Sbjct: 7   LVASWTLASLALADLRTRRLATFAVALVGALYAAQALAGAPGDGGFASHAALGAAAFALG 66

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPS 101
              F    + GGDVKL     +W G   +
Sbjct: 67  AAMFRAGWIAGGDVKLAAVVFLWAGPAHA 95


>gi|38233932|ref|NP_939699.1| hypothetical protein DIP1346 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200193|emb|CAE49874.1| Putative membrane protein [Corynebacterium diphtheriae]
          Length = 168

 Score = 36.0 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC--FFAFNIMGG 83
           D  +  +PNR ++       + A L     +     L  G+ V    F     A   +GG
Sbjct: 35  DCTTRRLPNRYTLSAAACSFIWAVLT----QHFEWILYAGIWVLPYVFIGSLSAMRGIGG 90

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           GD+KL  +  +      +    +   +I    LS+ +  +    +
Sbjct: 91  GDIKLSMALGI-VAAAHAGAQGVVVASICSSCLSIVLGLILRFLH 134


>gi|124265700|ref|YP_001019704.1| signal peptidase [Methylibium petroleiphilum PM1]
 gi|124258475|gb|ABM93469.1| signal peptidase [Methylibium petroleiphilum PM1]
          Length = 283

 Score = 36.0 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 54/152 (35%), Gaps = 21/152 (13%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
               L+  +  D  + ++P+ +++ +L    +  A    +         + G +     +
Sbjct: 134 FVAVLLALSGIDWDTTLLPDSLTLPLLWAGLVAAALGWTLPLSTSVWGAVFGYLSLWSVY 193

Query: 74  CFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
             F        MG GD KLL +   W GW    L  +   +++G I+ +           
Sbjct: 194 WLFKLTTGKEGMGAGDFKLLAALGAWLGW-QMLLPIVLGASLIGAIVGIA---------- 242

Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                M +  +      +P+G  ++  GL+  
Sbjct: 243 -----MKLAGALHEGRYVPFGPFLAGAGLVVL 269


>gi|167038592|ref|YP_001666170.1| peptidase A24A, prepilin type IV [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|320116980|ref|YP_004187139.1| peptidase A24A prepilin type IV [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
 gi|166857426|gb|ABY95834.1| peptidase A24A, prepilin type IV [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|319930071|gb|ADV80756.1| peptidase A24A prepilin type IV [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
          Length = 131

 Score = 36.0 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
          ++    L FAA+ D+    +       +L    +   L    Y  +   LL  L++FI+ 
Sbjct: 3  ILILLILFFAAVEDIKKMEVGYIYPASILILSFINVLLN--PYINLNFMLLNSLLIFIVL 60

Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGW 98
          F F+    +GGGDVK+LT+ A + G+
Sbjct: 61 FLFWLLGGIGGGDVKILTALAFYAGF 86


>gi|217423412|ref|ZP_03454913.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576]
 gi|217393270|gb|EEC33291.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576]
          Length = 135

 Score = 36.0 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 57  LIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
            ++  L+ G +  +  F FFA  +MG  DVK+      W G  P+        ++  G+ 
Sbjct: 22  TLSGALIGGAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGL-PALPRLWVVASVAAGVH 80

Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
           ++ ++ +          G     +   +   PY
Sbjct: 81  ALALMLLTRTPPGSLGRGGAPAFALGARRAAPY 113


>gi|301052943|ref|YP_003791154.1| late competence protein [Bacillus anthracis CI]
 gi|300375112|gb|ADK04016.1| late competence protein [Bacillus cereus biovar anthracis str. CI]
          Length = 249

 Score = 36.0 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +     ++     + + + C        +GG
Sbjct: 122 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KLL+                    I G      IL +    +        V K   M
Sbjct: 182 GDIKLLSLLGF----------------IAGLKGVFMILFLSSFFSLCFFGAGLVLKRMKM 225

Query: 144 KNKIPYGIAISMGGL 158
           + +IP+G  IS+G +
Sbjct: 226 RTQIPFGPFISLGAI 240


>gi|224824210|ref|ZP_03697318.1| peptidase A24A prepilin type IV [Lutiella nitroferrum 2002]
 gi|224603629|gb|EEG09804.1| peptidase A24A prepilin type IV [Lutiella nitroferrum 2002]
          Length = 183

 Score = 36.0 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D  +  IPN++ +  L    L   L      L+     +GL  F++    +    MG 
Sbjct: 27  ITDTAARKIPNKLVLGGLAVAFLCQGLFFGGSGLLDGAKGMGLG-FVLFLPLYLLRAMGA 85

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
           GDVKL+      F      +  + F  + GG+LS+ 
Sbjct: 86  GDVKLMAMVG-AFTGMQDIVGIVLFTFVAGGVLSLA 120


>gi|229588336|ref|YP_002870455.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Pseudomonas fluorescens SBW25]
 gi|229360202|emb|CAY47059.1| type IV prepilin-like proteins leader peptide processing enzyme
           [Pseudomonas fluorescens SBW25]
          Length = 288

 Score = 36.0 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGL 66
            +   L+  + L+  +L D    ++P+ + + +L    ++ A  L           ++G 
Sbjct: 129 QAGAMLVLSWGLLAMSLIDADHQLLPDALVMPLLWLGLIVNALGLLTTLPDALWGAVIGY 188

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F      + MG GD KLL     W GW    ++ L   +++G  + + ++ 
Sbjct: 189 MSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMT-LLISSLVGVFVGLILMR 247

Query: 123 VRMITNHIPIF 133
           +R      P+ 
Sbjct: 248 LRKARASTPMP 258


>gi|91762804|ref|ZP_01264769.1| Type II Secretion PilD [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718606|gb|EAS85256.1| Type II Secretion PilD [Candidatus Pelagibacter ubique HTCC1002]
          Length = 199

 Score = 36.0 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 12/123 (9%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLL 63
           + + +F I   C V     DL   +IPN ++  ++   LL +F   ++   +  +   L+
Sbjct: 40  LTTLLFFILSICFVIIFFIDLKHFIIPNELTYPLMIIGLLKSFDPNLNTTLFPNLVNSLI 99

Query: 64  VGLIVFIIC-FCFFAFN------IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
            GL  +II     F +        MG GD KLL+    WFGW  + + F+ F + +  +L
Sbjct: 100 GGLFGYIIIWLIIFTYKKLRNKEGMGLGDAKLLSVIGFWFGW--ASIPFVIFFSSVIALL 157

Query: 117 SVF 119
           SV 
Sbjct: 158 SVV 160


>gi|262377011|ref|ZP_06070237.1| type IV pilus prepilin peptidase PilD [Acinetobacter lwoffii SH145]
 gi|262308049|gb|EEY89186.1| type IV pilus prepilin peptidase PilD [Acinetobacter lwoffii SH145]
          Length = 286

 Score = 36.0 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 6/136 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           LI  + L+     D  + ++P+R ++ +      + ++ L           ++G +   +
Sbjct: 138 LILTYVLIALTFIDFDTQLLPDRYTLPLAALGLGVNSYALYTLPGAAIWGYIIGFLCLWV 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  L    + G I+ + +L VR   
Sbjct: 198 VYYAFKIVTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSLV-GAIIGIILLKVRKEN 256

Query: 128 NHIPIFGMFVPKSFLM 143
                        ++ 
Sbjct: 257 QPFAFGPYIAIAGWIA 272


>gi|167037484|ref|YP_001665062.1| peptidase A24A domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040146|ref|YP_001663131.1| peptidase A24A domain-containing protein [Thermoanaerobacter sp.
           X514]
 gi|256752524|ref|ZP_05493380.1| peptidase A24A domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914230|ref|ZP_07131546.1| Prepilin peptidase [Thermoanaerobacter sp. X561]
 gi|307724535|ref|YP_003904286.1| Prepilin peptidase [Thermoanaerobacter sp. X513]
 gi|320115898|ref|YP_004186057.1| Prepilin peptidase [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166854386|gb|ABY92795.1| peptidase A24A domain protein [Thermoanaerobacter sp. X514]
 gi|166856318|gb|ABY94726.1| peptidase A24A domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|256748590|gb|EEU61638.1| peptidase A24A domain protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889165|gb|EFK84311.1| Prepilin peptidase [Thermoanaerobacter sp. X561]
 gi|307581596|gb|ADN54995.1| Prepilin peptidase [Thermoanaerobacter sp. X513]
 gi|319928989|gb|ADV79674.1| Prepilin peptidase [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 252

 Score = 36.0 bits (82), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           ++     L+  +  D+   ++PN++ +V  +G  +    +    +    + L++G  + +
Sbjct: 103 YMFLASILIAVSFIDIEHRIVPNKIILVGFIGGIIFRVLMYNYGFIDYIMGLVLGGGILL 162

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI--LGGILSVFI 120
           +         MGGGD+KL+     + GW  + L     V I  LGG++ V +
Sbjct: 163 LISLISGGE-MGGGDIKLMALIGFFIGWKLTILVLFLSVIIGALGGVILVAL 213


>gi|258510325|ref|YP_003183759.1| peptidase A24A domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477051|gb|ACV57370.1| peptidase A24A domain protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 261

 Score = 36.0 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 1/123 (0%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           AV+      L  A   DL S ++P+ +++     F L + L G+   L+A        V 
Sbjct: 108 AVWWAFWLYLASAVACDLTSLILPDVLTLPAGVIFFLGSGLTGIRTWLMAAAGAAVGYVI 167

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           +    F     MG GD KL        G     ++F+   AI G + ++ +     +   
Sbjct: 168 VAAIHFVTGGKMGMGDAKLNLGIGAMLGPGYMVMAFVL-AAIYGVLAALPLRLAGRVKPQ 226

Query: 130 IPI 132
            PI
Sbjct: 227 QPI 229


>gi|254429932|ref|ZP_05043639.1| Bacterial Peptidase A24 N-terminal domain family [Alcanivorax sp.
           DG881]
 gi|196196101|gb|EDX91060.1| Bacterial Peptidase A24 N-terminal domain family [Alcanivorax sp.
           DG881]
          Length = 269

 Score = 36.0 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 23/150 (15%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFIICFCF 75
            L+ AA+ D  + ++P+ ++  +L + LL A   +  +         + G +     +  
Sbjct: 121 LLLAAAMIDADTTLLPDSLNYWLLWTGLLAAVMGVSPVSLSDAVTGAMAGYLSLWSVYWL 180

Query: 76  FAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
           F        MG GD KLL +   W GW       +   +++G + ++ ++          
Sbjct: 181 FKLITGKEGMGYGDFKLLAALGAWVGW-QYLPVIILLSSVVGLVFAIAMMMF-------- 231

Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                   S   + +IP+G  ++  G I+ 
Sbjct: 232 --------SGEKRTQIPFGPYLATAGWIAL 253


>gi|284047857|ref|YP_003398196.1| peptidase A24A domain protein [Acidaminococcus fermentans DSM
           20731]
 gi|283952078|gb|ADB46881.1| peptidase A24A domain protein [Acidaminococcus fermentans DSM
           20731]
          Length = 772

 Score = 36.0 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 9/72 (12%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-------MITNHIPIF 133
           MG GD KL     +W G      SF   + +    LSV  L  +        +   +P+ 
Sbjct: 178 MGAGDPKLAAVMGLWLGPVLGLRSFFLAMGMA--FLSVAFLGFKTHSRWQEHMAMQVPLA 235

Query: 134 GMFVPKSFLMKN 145
             F     L+++
Sbjct: 236 PFFFGAGLLLRS 247


>gi|257052852|ref|YP_003130685.1| Peptidase A24B, FlaK domain protein [Halorhabdus utahensis DSM
           12940]
 gi|256691615|gb|ACV11952.1| Peptidase A24B, FlaK domain protein [Halorhabdus utahensis DSM
           12940]
          Length = 375

 Score = 36.0 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 18/111 (16%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---------------- 53
              L+ P    + A  D+ +  +PNR  + +L   ++     G                 
Sbjct: 26  LRLLVVPV-FGWVAWRDVRTRRVPNRTWLPLLVLGVVLLVWDGWLVWTDGLVVDPRVFTP 84

Query: 54  DYELIALHLLVGLIVFI-ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL 103
              L    +   L + + + + F+     GG D K L   A+ F   P++L
Sbjct: 85  TPALFVFQVAFSLGLLVPLAYAFWWMGGFGGADAKALIVLAILFPTYPTYL 135


>gi|307594683|ref|YP_003901000.1| peptidase A24A prepilin type IV [Vulcanisaeta distributa DSM 14429]
 gi|307549884|gb|ADN49949.1| peptidase A24A prepilin type IV [Vulcanisaeta distributa DSM 14429]
          Length = 253

 Score = 35.6 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 37/100 (37%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           +L+     V A++ DL +  I +   I+     +     + +    + L+++  ++  + 
Sbjct: 12  YLLVLAVQVAASIQDLRTREISDWTWIIGSIMCVPLGLYVVIMLNQLILYIVSVVVGSVF 71

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111
               +    MGG D K +   +      P     L  + I
Sbjct: 72  ALAVYWLRAMGGADSKSIAFISASIPTLPMATPALTIINI 111


>gi|284048378|ref|YP_003398717.1| peptidase A24A prepilin type IV [Acidaminococcus fermentans DSM
           20731]
 gi|283952599|gb|ADB47402.1| peptidase A24A prepilin type IV [Acidaminococcus fermentans DSM
           20731]
          Length = 211

 Score = 35.6 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            + L+    L++   +D     + + + +      L+             L  L G +VF
Sbjct: 73  VLMLVFTAFLLWMTATDFEQYCLFDTMMLPFALGALVMLARYPDMLVSHLLAGLAGGVVF 132

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
            +     +   +GGGD+KLL +  +W G  P  +       +LGG  ++ +L     +  
Sbjct: 133 -LAVGLLSRGALGGGDIKLLAALGLWMG--PRLVFVAAAGTVLGGAAALVLLLTGQKSRK 189

Query: 130 IPIF 133
               
Sbjct: 190 SAFA 193


>gi|326205018|ref|ZP_08194868.1| peptidase A24A prepilin type IV [Clostridium papyrosolvens DSM
           2782]
 gi|325984823|gb|EGD45669.1| peptidase A24A prepilin type IV [Clostridium papyrosolvens DSM
           2782]
          Length = 184

 Score = 35.6 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 2/113 (1%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           +A   +     + AAL D+    IP ++++  L + +    L G   E +A  ++  +++
Sbjct: 42  AAAIEVLLIVQLLAALWDINDMTIPLKITVPALSAGVGIVALTGRFSEGMAASIVAFILM 101

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            ++     + N +GGGD+ ++T T ++ G +         V + G   ++FIL
Sbjct: 102 KLLTII--SRNQVGGGDIAIMTVTGLYTGISTLISILFTAVTLAGIFSTIFIL 152


>gi|254423256|ref|ZP_05036974.1| Bacterial Peptidase A24 N-terminal domain family [Synechococcus sp.
           PCC 7335]
 gi|196190745|gb|EDX85709.1| Bacterial Peptidase A24 N-terminal domain family [Synechococcus sp.
           PCC 7335]
          Length = 276

 Score = 35.6 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 31/163 (19%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVF--- 69
           I    L+  AL DL +  +PNR++   ++  +     +  +    +   +   +  F   
Sbjct: 111 IFLCWLLVLALIDLDTMTLPNRLTASGLILGWGFQGSISYLATPTLLSGMSGVVAAFFSS 170

Query: 70  -----------IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
                      I     F    MGGGD KL    A W GW P  L   F  A +G ++  
Sbjct: 171 IFGLWLFDLIGIAGSSVFGKTAMGGGDSKLAAMMAAWLGW-PGLLLATFLAAAMGSLIGG 229

Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
             L + MI                 K +IP+G  +++G  ++ 
Sbjct: 230 SALVLGMI---------------DRKQQIPFGPYLALGATLTL 257


>gi|326630079|gb|EGE36422.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 197

 Score = 35.6 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 11/135 (8%)

Query: 10  AVFLIPPFCLVFAALS------DLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHL 62
            +F+  PF + +A+ S      D  + ++P+R    ++ G  L     L           
Sbjct: 42  LMFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGA 101

Query: 63  LVGLIVFIICFCFFAFNI----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
           + G   F + +  +        +G GDVK L S   W  W    L       +  G   V
Sbjct: 102 IAGYGGFALIYWGYRLRYQKEGLGYGDVKYLASLGAWHCWETLPLLVFLAAMLACGGFGV 161

Query: 119 FILTVRMITNHIPIF 133
            +L         P+ 
Sbjct: 162 ALLVRGKSALINPLP 176


>gi|167759924|ref|ZP_02432051.1| hypothetical protein CLOSCI_02288 [Clostridium scindens ATCC 35704]
 gi|167662543|gb|EDS06673.1| hypothetical protein CLOSCI_02288 [Clostridium scindens ATCC 35704]
          Length = 257

 Score = 35.6 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 1/117 (0%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           +         L   A  D+ +  I +   I M+    ++ F +     L  L   + + +
Sbjct: 105 ALTVFAFFCILTVVAFLDIETMEIEDGCQIAMVILAAISIFTMPETSLLARLAGALCVSL 164

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            ++          GGGD+KL+ +  ++ GW  + +S    + + GGI   ++L  + 
Sbjct: 165 PMLVLSIVIPGAFGGGDIKLMAACGLFLGWKITLVSAALAI-LFGGIYGCYLLAAQK 220


>gi|148651966|ref|YP_001279059.1| peptidase A24A domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148571050|gb|ABQ93109.1| peptidase A24A domain protein [Psychrobacter sp. PRwf-1]
          Length = 306

 Score = 35.6 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 8/128 (6%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  +  +P+ ++  +     ++ +  + +   L    L++G +   +
Sbjct: 157 LVFLWLLIALVGIDFETQYLPDNLTYPLAILGLMVNSHSVFVSPSLSIWGLILGYLSLWV 216

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSF-LFFVAILGGILSVFILTVRMI 126
               F        MG GD KLL +   W G  P  L F +   ++LG I+ + +L  R  
Sbjct: 217 VVKVFYLFTRKQGMGQGDFKLLAALGAWLG--PFMLPFVILLSSVLGTIMGLILLKERRE 274

Query: 127 TNHIPIFG 134
           +       
Sbjct: 275 SQPFAFGP 282


>gi|218884525|ref|YP_002428907.1| peptidase A24A, prepilin type IV [Desulfurococcus kamchatkensis
           1221n]
 gi|218766141|gb|ACL11540.1| peptidase A24A, prepilin type IV [Desulfurococcus kamchatkensis
           1221n]
          Length = 259

 Score = 35.6 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 39/98 (39%)

Query: 4   SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
           S +V +   +     L+  ++ D     I + +  V  G  ++   L    Y+   L+L 
Sbjct: 6   SNLVEAIKIIYFLGFLLVFSIQDYKRREISDNLVYVFTGGSIVFCSLTIYMYKPPPLYLA 65

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS 101
              +V  +    +   +MG GDV ++ S  + +   P 
Sbjct: 66  FSFMVPALFIAMYLAGLMGEGDVYVIFSLTLLYPVPPH 103


>gi|307571131|emb|CAR84310.1| type IV leader peptidase / N-methyltransferase [Listeria
           monocytogenes L99]
          Length = 211

 Score = 35.6 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           V+ I  + L F  ++D+F   +PN + IV   + ++ AFL            ++    ++
Sbjct: 74  VYCIIYYFLAFFFITDIFYMYVPNSILIVFSCALIILAFLYNQPLIDFIYSSILSCFFYL 133

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           + F  F    +G GD+K+L   + + G+   +  F   + +   IL   +L  R+  N 
Sbjct: 134 LFFIIFRKG-IGLGDIKILIILSSFLGFKTGYYIFFLAIILGTIILFTALLLKRVKKNK 191


>gi|284163393|ref|YP_003401672.1| peptidase A24A prepilin type IV [Haloterrigena turkmenica DSM 5511]
 gi|284013048|gb|ADB58999.1| peptidase A24A prepilin type IV [Haloterrigena turkmenica DSM 5511]
          Length = 349

 Score = 35.6 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 13  LIPPFCLVFAALSDLFSAMIPN--RVSIVMLGSFLL-----TAFLLGMDYELIALHLLVG 65
           L+      + A+ D+ +  + +   + + +LG+ LL      A+  G         L   
Sbjct: 15  LVAVPVFAWVAVRDIKTRRVSSAVWIPLSLLGAVLLVWDGWLAWTTGGTAWTYDFLLPTA 74

Query: 66  LI---VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102
           +    V  I + F+    +GG D K L   A++F   P +
Sbjct: 75  VSLGFVVPIAYLFWWVGGIGGADAKALLVLALFFPVYPEY 114


>gi|332295911|ref|YP_004437834.1| Prepilin peptidase [Thermodesulfobium narugense DSM 14796]
 gi|332179014|gb|AEE14703.1| Prepilin peptidase [Thermodesulfobium narugense DSM 14796]
          Length = 245

 Score = 35.6 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
            +DL + +IP+  S++ L   +  A L G   E +A  +  G+ +            MGG
Sbjct: 112 FTDLETLLIPDSFSLLSLIPAIGIAALRGNLVESLA--VAAGVFLLFYGVSIITNGGMGG 169

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
           GD K   S + + G   S    LF   +LG ++ +    + +I    PI 
Sbjct: 170 GDTKYSASMSCFLGVFHSLFG-LFTAFLLGSVIGIIFRILGIIKRGEPIP 218


>gi|307131907|ref|YP_003883923.1| prepilin peptidase [Dickeya dadantii 3937]
 gi|306529436|gb|ADM99366.1| prepilin peptidase [Dickeya dadantii 3937]
          Length = 283

 Score = 35.6 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 19  LVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77
           L+  A  D  + ++P+ +++ +L G  L       +  E   +  + G +   + +  F 
Sbjct: 142 LLALAAIDARTQLLPDVMTLPLLWGGLLFNLADTFVPLEQAVVGAMAGYLSLWLIYWAFR 201

Query: 78  F----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
                  +G GD KLL +   W GW  +  + +   ++ G   ++    VR I+   P+ 
Sbjct: 202 LLSGREALGQGDFKLLAALGAWLGW-QALPNLVLIASLTGLAATLLWRRVRRISMQQPLA 260


>gi|217958880|ref|YP_002337428.1| late competence protein comC [Bacillus cereus AH187]
 gi|217062953|gb|ACJ77203.1| late competence protein comC [Bacillus cereus AH187]
          Length = 240

 Score = 35.6 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 4/116 (3%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +   + ++     + + + C        +GG
Sbjct: 113 VTDYIYMLIPNRILAWFACLLILECAFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGLGG 172

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135
           GDVKLL+      G    F+             G  L +  + +R      P   +
Sbjct: 173 GDVKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKRMKMRTQIPFGPFISL 228


>gi|307824335|ref|ZP_07654561.1| Prepilin peptidase [Methylobacter tundripaludum SV96]
 gi|307734715|gb|EFO05566.1| Prepilin peptidase [Methylobacter tundripaludum SV96]
          Length = 300

 Score = 35.6 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGL 66
            +   LI  + L+     D+   ++P+ +++ +L     L+ F +  D     +    G 
Sbjct: 142 QAVFALILTWSLIALIFIDVDHQLLPDSITLPLLWLGMCLSLFNVYTDAHASIIGAAAGY 201

Query: 67  IVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
                 F  F        MG GD KLL     W GW    +  +   +++G ++ V ++ 
Sbjct: 202 TALWAVFHLFKLATGKEGMGYGDFKLLALFGAWLGWQYLPI-IILLSSLVGAVIGVGMII 260

Query: 123 VRMITNHIPIF 133
                +++PI 
Sbjct: 261 FVKHDHNVPIP 271


>gi|167041756|gb|ABZ06499.1| putative bacterial peptidase A24 N-terminal domain protein
           [uncultured marine microorganism HF4000_010L19]
          Length = 262

 Score = 35.6 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 26/159 (16%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDY---ELIALHLLVGLIVFIICFCFFAF---- 78
           DL   +IP+ ++  ++    L  FL  ++    + I L L+ G+  F   +         
Sbjct: 120 DLKHFIIPDILNYGIIVIAFLKNFLPDLNLSFIQDIKLSLMGGIAGFFSIWIIIYLYKTF 179

Query: 79  ---NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
                MG GD KL+    + FGW    + F+ F+A + G+L               +   
Sbjct: 180 KKKEGMGLGDAKLMAGVGLLFGW--QSIPFVLFLAAVLGLL--------------MVMPS 223

Query: 136 FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174
              K   +K+++P+G  I   G+I +    +     +G+
Sbjct: 224 LYEKKKSLKSQVPFGPYIITAGVIYFLYGDVLYKMALGI 262


>gi|33600807|ref|NP_888367.1| hypothetical protein BB1822 [Bordetella bronchiseptica RB50]
 gi|33568407|emb|CAE32319.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 174

 Score = 35.6 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 10/106 (9%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS----FLLTAFLLGMDYELIALHLLVG 65
           AV++     +VF    DL +  +PNR+ I    +        A+ +       A      
Sbjct: 12  AVYVAFNLLVVF---YDLRARRVPNRLLIAAALAQCAWLAWHAWGVQATPAAGARGWSDA 68

Query: 66  LIVFIICFC---FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108
            + F++       +   +MG GDVK L    +  G  P  L  +  
Sbjct: 69  GLGFVLGMAFVMLWRMRLMGAGDVKYLAVLGLAIGAWPWLLVLVLA 114


>gi|319940438|ref|ZP_08014783.1| hypothetical protein HMPREF9464_00002 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806064|gb|EFW02813.1| hypothetical protein HMPREF9464_00002 [Sutterella wadsworthensis
           3_1_45B]
          Length = 101

 Score = 35.6 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 16/94 (17%)

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
           MG GDVKL    + W G           ++++GG++ + +  +RMI      +   + ++
Sbjct: 1   MGAGDVKLAAVLSFWAGSDALLFL--ILLSLVGGLMVLGLPLLRMIETKTGFWAERLAEA 58

Query: 141 F--------------LMKNKIPYGIAISMGGLIS 160
           F                +  +PYG+AI+ G    
Sbjct: 59  FGRPLECTPIGLLGGEAQKGLPYGLAIAAGFAAV 92


>gi|326205020|ref|ZP_08194870.1| peptidase A24A prepilin type IV [Clostridium papyrosolvens DSM
           2782]
 gi|325984825|gb|EGD45671.1| peptidase A24A prepilin type IV [Clostridium papyrosolvens DSM
           2782]
          Length = 167

 Score = 35.6 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 55/123 (44%), Gaps = 4/123 (3%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           ++I    L+F+ LSD+ ++ I N  ++  ++    +  +  G+        +   ++  +
Sbjct: 4   YIILFIVLLFSVLSDIRTSKIRNIYTVSAIIAGIGINTYFSGI--YGFKESIKGSIVPVL 61

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           I   FF   ++G GD+KL +S     G     ++   +  ++ G+ S+ IL ++      
Sbjct: 62  ILGVFFCARLIGAGDIKLYSSVGAVLGIDFVIMAA-AYSFLVCGLYSLAILCIKRRVLST 120

Query: 131 PIF 133
            + 
Sbjct: 121 LVP 123


>gi|400693|sp|P31712|LEP4_PECCC RecName: Full=Type 4 prepilin-like proteins leader
           peptide-processing enzyme; AltName: Full=Pectic enzymes
           secretion protein outO; Includes: RecName: Full=Leader
           peptidase; AltName: Full=Prepilin peptidase; Includes:
           RecName: Full=N-methyltransferase
 gi|581154|emb|CAA49656.1| outO [Pectobacterium carotovorum]
          Length = 279

 Score = 35.6 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 24  LSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN--- 79
           + D+ + ++P+ +++ +L    L       +      +  + G +   + +  F +    
Sbjct: 146 VIDIKTLLLPDELTLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGK 205

Query: 80  -IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             +G GD KLL +   W GW  +  + +   A+ G ++++    +R      P+ 
Sbjct: 206 EALGYGDFKLLAALGAWLGW-QALPNLVLVAALSGLVVTLIWRGLRKEDTAKPLA 259


>gi|304438510|ref|ZP_07398450.1| possible type II secretory pathway, prepilin signal peptidase PulO
           and peptidase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368593|gb|EFM22278.1| possible type II secretory pathway, prepilin signal peptidase PulO
           and peptidase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 186

 Score = 35.6 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    L++ +  DL   M+ + +++      L+ + +  +   L+   L     V   C
Sbjct: 43  VLFTAVLLWLSYLDLRDGMLYDCITMPFAVLGLMVSGVDSISDALLGGTL---CGVLFYC 99

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLS 104
               A   +GGGDVKL     +W GW  + ++
Sbjct: 100 LYIAARGGLGGGDVKLAAGLGLWLGWEAAIVA 131


>gi|197123320|ref|YP_002135271.1| peptidase A24A prepilin type IV [Anaeromyxobacter sp. K]
 gi|196173169|gb|ACG74142.1| peptidase A24A prepilin type IV [Anaeromyxobacter sp. K]
          Length = 170

 Score = 35.6 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 53/163 (32%), Gaps = 11/163 (6%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M     F    F L  AA SD     I NR+++ +    +    + G         +   
Sbjct: 2   MASPLAFGTFGFLLAVAAASDAAGRRISNRITVPLAVGGIALQAVAGGLAGAAGALVATA 61

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT--- 122
            +   + +  ++   +GGGD KL  + A W G               GG+ +V  L    
Sbjct: 62  AVG-ALLWVPWSRGWLGGGDWKLAVAAAPWVGLGSLASYLTTSAVAAGGLATVAWLASGG 120

Query: 123 -------VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
                    +             ++   +  +P G A ++G L
Sbjct: 121 AARRDIGANLRAAAAGRPVSIPARAAGDRVSVPAGAAFAVGAL 163


>gi|30261407|ref|NP_843784.1| late competence protein comC [Bacillus anthracis str. Ames]
 gi|47526583|ref|YP_017932.1| late competence protein comC [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184237|ref|YP_027489.1| late competence protein comC [Bacillus anthracis str. Sterne]
 gi|165870403|ref|ZP_02215058.1| late competence protein comC [Bacillus anthracis str. A0488]
 gi|167634416|ref|ZP_02392737.1| late competence protein comC [Bacillus anthracis str. A0442]
 gi|167639212|ref|ZP_02397484.1| late competence protein comC [Bacillus anthracis str. A0193]
 gi|170686641|ref|ZP_02877861.1| late competence protein comC [Bacillus anthracis str. A0465]
 gi|170706232|ref|ZP_02896693.1| late competence protein comC [Bacillus anthracis str. A0389]
 gi|177651410|ref|ZP_02934199.1| late competence protein comC [Bacillus anthracis str. A0174]
 gi|190568727|ref|ZP_03021631.1| late competence protein comC [Bacillus anthracis Tsiankovskii-I]
 gi|196035388|ref|ZP_03102793.1| late competence protein comC [Bacillus cereus W]
 gi|218902512|ref|YP_002450346.1| late competence protein comC [Bacillus cereus AH820]
 gi|227815854|ref|YP_002815863.1| late competence protein comC [Bacillus anthracis str. CDC 684]
 gi|229603371|ref|YP_002865823.1| late competence protein comC [Bacillus anthracis str. A0248]
 gi|254682535|ref|ZP_05146396.1| late competence protein comC [Bacillus anthracis str. CNEVA-9066]
 gi|254726197|ref|ZP_05187979.1| late competence protein comC [Bacillus anthracis str. A1055]
 gi|254733953|ref|ZP_05191667.1| late competence protein comC [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740359|ref|ZP_05198050.1| late competence protein comC [Bacillus anthracis str. Kruger B]
 gi|254753747|ref|ZP_05205782.1| late competence protein comC [Bacillus anthracis str. Vollum]
 gi|254758843|ref|ZP_05210870.1| late competence protein comC [Bacillus anthracis str. Australia 94]
 gi|30255261|gb|AAP25270.1| late competence protein comC [Bacillus anthracis str. Ames]
 gi|47501731|gb|AAT30407.1| late competence protein comC [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178164|gb|AAT53540.1| late competence protein comC [Bacillus anthracis str. Sterne]
 gi|164713898|gb|EDR19420.1| late competence protein comC [Bacillus anthracis str. A0488]
 gi|167512651|gb|EDR88025.1| late competence protein comC [Bacillus anthracis str. A0193]
 gi|167530304|gb|EDR93030.1| late competence protein comC [Bacillus anthracis str. A0442]
 gi|170128766|gb|EDS97632.1| late competence protein comC [Bacillus anthracis str. A0389]
 gi|170669164|gb|EDT19907.1| late competence protein comC [Bacillus anthracis str. A0465]
 gi|172082688|gb|EDT67751.1| late competence protein comC [Bacillus anthracis str. A0174]
 gi|190560143|gb|EDV14124.1| late competence protein comC [Bacillus anthracis Tsiankovskii-I]
 gi|195992065|gb|EDX56028.1| late competence protein comC [Bacillus cereus W]
 gi|218540179|gb|ACK92577.1| late competence protein comC [Bacillus cereus AH820]
 gi|227006947|gb|ACP16690.1| late competence protein comC [Bacillus anthracis str. CDC 684]
 gi|229267779|gb|ACQ49416.1| late competence protein comC [Bacillus anthracis str. A0248]
          Length = 240

 Score = 35.6 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +     ++     + + + C        +GG
Sbjct: 113 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 172

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KLL+                    I G      IL +    +        V K   M
Sbjct: 173 GDIKLLSLLGF----------------IAGLKGVFMILFLSSFFSLCFFGAGLVLKRMKM 216

Query: 144 KNKIPYGIAISMGGL 158
           + +IP+G  IS+G +
Sbjct: 217 RTQIPFGPFISLGAI 231


>gi|325678263|ref|ZP_08157891.1| peptidase, A24 family [Ruminococcus albus 8]
 gi|324110026|gb|EGC04214.1| peptidase, A24 family [Ruminococcus albus 8]
          Length = 277

 Score = 35.6 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 22  AALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFIICFCFF---- 76
           AAL+D     IPN +      S  +   L    D + I   L   LI F++ F       
Sbjct: 142 AALTDFKRRKIPNALIACGAVSRGIIYVLEFIFDRDEILFTLKNDLIGFLLGFVMLFVVA 201

Query: 77  --AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
             +   +G GDVKL     V  G T  +++ L    I+  + ++ ++  R  T
Sbjct: 202 IISKGGIGYGDVKLFGVLGVMAGSTGLYMT-LLISLIINSVTALGLMAARKKT 253


>gi|229102004|ref|ZP_04232717.1| Peptidase A24A domain protein [Bacillus cereus Rock3-28]
 gi|228681391|gb|EEL35555.1| Peptidase A24A domain protein [Bacillus cereus Rock3-28]
          Length = 249

 Score = 35.6 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 44/115 (38%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IP+R+ I      +L    + +   + ++     ++  + C        +GG
Sbjct: 122 VTDYIYMLIPDRILISFAFLLILECIFVPLVTWIDSIVGSGVILFLLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           GD+KLL+      G    F+              + IL  R+  +    FG F+ 
Sbjct: 182 GDIKLLSLLGFIVGLKGVFIILFLASYFSLCFFGMGILLKRIEASKPIPFGPFIS 236


>gi|152980010|ref|YP_001354688.1| leader peptidase (prepilin peptidase) / N-methyltransferase
           [Janthinobacterium sp. Marseille]
 gi|151280087|gb|ABR88497.1| leader peptidase (prepilin peptidase) / N-methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 286

 Score = 35.6 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 21/154 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P+ +++ +L   LL       +      +    G +    
Sbjct: 135 LLFTYLLIALTFIDADTQLLPDDLTLSLLWLGLLINLNATFVPLHEAVIGAAAGYLSLWS 194

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W GW    +  +   +++G ++ + ++ +    
Sbjct: 195 IYWLFKLLTGKEGMGYGDFKLLAALGAWLGWKMLPV-IILLSSLVGAVVGIALIVLAKRG 253

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
             IP               IP+G  ++  GLI+ 
Sbjct: 254 RDIP---------------IPFGPYLAAAGLIAL 272


>gi|134095953|ref|YP_001101028.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Herminiimonas arsenicoxydans]
 gi|133739856|emb|CAL62907.1| type 4 prepilin-like proteins leader peptide processing enzyme
           (Protein secretion protein XCPA)[Includes: Leader
           peptidase (Prepilin peptidase); N-methyltransferase ]
           [Herminiimonas arsenicoxydans]
          Length = 286

 Score = 35.6 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65
           +     L+  + L+     D  + ++P+ +++ +L   LL       +  E   +    G
Sbjct: 129 LLGLATLVFAYLLIAMTFIDADTQLLPDDLTLSLLWLGLLLNLNATFVPLEEAVIGATAG 188

Query: 66  LIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   W GW    +  +   +++G ++ + ++
Sbjct: 189 YMSLWSIYWLFKLATGKEGMGYGDFKLLAALGAWLGWKMLPV-IILLSSLVGAVVGIALI 247

Query: 122 TVRMITNHIPIF 133
            +      IPI 
Sbjct: 248 MLAKRGRDIPIP 259


>gi|118476879|ref|YP_894030.1| N-methyltransferase) [Bacillus thuringiensis str. Al Hakam]
 gi|229183597|ref|ZP_04310820.1| Peptidase A24A domain protein [Bacillus cereus BGSC 6E1]
 gi|118416104|gb|ABK84523.1| late competence protein (includes: leader peptidase,
           N-methyltransferase) [Bacillus thuringiensis str. Al
           Hakam]
 gi|228599840|gb|EEK57437.1| Peptidase A24A domain protein [Bacillus cereus BGSC 6E1]
          Length = 249

 Score = 35.6 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +     ++     + + + C        +GG
Sbjct: 122 VTDYIYMLIPNRILAWFCCLLILECVFVPLVTWTESIVGSGVIFILLYCMRKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KLL+      G    F+              V ++  RM                 M
Sbjct: 182 GDIKLLSLLGFIVGLKGIFMILFLSSFFSLCFFGVGLVLKRM----------------KM 225

Query: 144 KNKIPYGIAISMGGL 158
           + +IP+G  IS+G +
Sbjct: 226 RTQIPFGPFISLGAI 240


>gi|161506004|ref|YP_001573116.1| hypothetical protein SARI_04185 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867351|gb|ABX23974.1| hypothetical protein SARI_04185 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 197

 Score = 35.6 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 6/134 (4%)

Query: 6   MVFSAVFLIPPFCL-VFAALSDLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHLL 63
           M  +  FLI      +   + D  + ++P+R    ++ G  L     L           +
Sbjct: 43  MFAALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAI 102

Query: 64  VGLIVFIICFCFFAFNI----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
            G   F + +  +        +G GDVK L +   W  W    L       +  G   V 
Sbjct: 103 AGYSGFALIYWSYRLRYQKEGLGYGDVKYLAALGAWHCWESLPLLVFLAAMLACGGFGVA 162

Query: 120 ILTVRMITNHIPIF 133
           +L         P+ 
Sbjct: 163 LLVRGKSALINPLP 176


>gi|134046468|ref|YP_001097953.1| peptidase A24-like protein [Methanococcus maripaludis C5]
 gi|132664093|gb|ABO35739.1| Peptidase A24-like protein [Methanococcus maripaludis C5]
          Length = 346

 Score = 35.6 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 7  VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
          +   V+L     ++ A  +D+   +IP+ V I+ML   L   + L   ++ I       +
Sbjct: 7  LILGVYLFNFLLILTATFTDIKERIIPHFVIILMLIVNLPVGYYL-FGFDAITSFFATLI 65

Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTA 93
          +  I+         MGGGDVK+ T+ +
Sbjct: 66 LCLILGVG------MGGGDVKMFTALS 86


>gi|84515632|ref|ZP_01002994.1| hypothetical protein SKA53_03201 [Loktanella vestfoldensis SKA53]
 gi|84510915|gb|EAQ07370.1| hypothetical protein SKA53_03201 [Loktanella vestfoldensis SKA53]
          Length = 151

 Score = 35.6 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 7/148 (4%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    L+ A + ++    +PN ++++    F+    +   D  + A  L+   +VF++  
Sbjct: 8   LMSLILIAAMVIEMRDGRLPNLLTMLPFVVFMAL-IVTAPDPAVFAGRLVGAAMVFVVGL 66

Query: 74  CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             FA    G G VKLLT  A++     +  +F  F      I+++F  T  ++  H    
Sbjct: 67  VLFAVAGFGAGAVKLLTGLALFIPPEDALATFAIF------IVTMFAGTFIILQLHKRFA 120

Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISY 161
                   L K  +P  + I + GL ++
Sbjct: 121 AQGSKWVILNKRVLPMSLPIGIAGLCAF 148


>gi|285017459|ref|YP_003375170.1| type II secretory pathway prepilin signal peptidase [Xanthomonas
           albilineans GPE PC73]
 gi|283472677|emb|CBA15182.1| probable type II secretory pathway prepilin signal peptidase
           protein [Xanthomonas albilineans]
          Length = 287

 Score = 35.6 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 21/154 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
           ++    LV  +  DL + ++P+++++ ++   L+ +   L M  +   L   VG +    
Sbjct: 133 IVLSCFLVALSGIDLRTRLLPDQLTLPLMWLGLIGSMDNLYMPAKPALLGAAVGYVSLWS 192

Query: 72  CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   +++G IL           
Sbjct: 193 VWWLFKQITGKEGMGHGDFKLLAAIGAWCGL-KGILPVILISSLVGAILG---------- 241

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                      K       IP+G  +++ G I++
Sbjct: 242 -----SAWLAAKGRDRATPIPFGPYLAIAGWITF 270


>gi|237807311|ref|YP_002891751.1| Prepilin peptidase [Tolumonas auensis DSM 9187]
 gi|237499572|gb|ACQ92165.1| Prepilin peptidase [Tolumonas auensis DSM 9187]
          Length = 286

 Score = 35.6 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 53  MDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108
           +      +  + G +V    +  F        MG GD KLL +   W GW    L  L  
Sbjct: 175 VPLADAVIGAIAGYMVLWSIYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPL-ILIL 233

Query: 109 VAILGGILSVFILTVRMITNHIPIF 133
            + +G IL + ++ +R      P+ 
Sbjct: 234 SSCVGAILGITLVVMRRHQQSKPMP 258


>gi|317487399|ref|ZP_07946187.1| bacterial Peptidase A24 domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316921331|gb|EFV42629.1| bacterial Peptidase A24 domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 270

 Score = 35.6 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVF 69
           V+L+    L+ A+  DL   ++P+ +++      +  A F LGMD+    L  LVG   F
Sbjct: 112 VYLVFTGMLIVASGIDLECFILPDGITLGGTVLAVPAAVFALGMDWTDALLGGLVGGGTF 171

Query: 70  IICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           +     F      + MG GDVKL+    +     P  L  +  VA +   L+ F+L   +
Sbjct: 172 LAVLLVFKRLRGVDGMGFGDVKLM--LMLGVLCGPLGLPLITLVAGV-SALAAFLLIACL 228

Query: 126 ITNHIPIFGMFVP 138
           +    P+  M +P
Sbjct: 229 MPREAPLREMPIP 241


>gi|330828057|ref|YP_004391009.1| N-methyltransferase [Aeromonas veronii B565]
 gi|328803193|gb|AEB48392.1| N-methyltransferase [Aeromonas veronii B565]
          Length = 290

 Score = 35.6 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67
           +   L+  + LV     DL   ++P+++++ +L   LL     G        +  + G +
Sbjct: 134 ALAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLASGFVPLADAVIGAMAGYL 193

Query: 68  VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
           V    +  F        MG GD KLL +   W GW    +  L    + G ++ + ++ +
Sbjct: 194 VLWSLYWAFKLLTSKEGMGYGDFKLLAALGAWLGWQALPIILLLSSLV-GAVIGISLIAL 252

Query: 124 RMITNHIPIF 133
           +      PI 
Sbjct: 253 QKHHQGKPIP 262


>gi|152983320|ref|YP_001355009.1| A24A family peptidase [Janthinobacterium sp. Marseille]
 gi|151283397|gb|ABR91807.1| peptidase A24A family [Janthinobacterium sp. Marseille]
          Length = 172

 Score = 35.6 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL--HLLVGLIVFIICFC 74
              +     D+    +PN + ++ L          G  Y  + +   LL  +I  I+   
Sbjct: 7   LLCIAIIAYDVLFRRVPNSLLLLALLVHTGYMIATGSGYAGLGVTQSLLAVVIALIVFVP 66

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP--- 131
            +A  +MG GDVK L       G    F++  F  +++ G+ ++   + +M    +P   
Sbjct: 67  LYALRVMGAGDVKFLAIVGALLGLKALFVA-CFIGSLVAGLHALMFYSAQMWLAMMPSGL 125

Query: 132 ----------IFGMFVPKSFLMKNKIPYGIAISMG 156
                          V  +   +  IPY   +++G
Sbjct: 126 HRLMQQVGGSSMYQRVLNARQGRKGIPYAAYLAIG 160


>gi|292491516|ref|YP_003526955.1| peptidase A24A prepilin type IV [Nitrosococcus halophilus Nc4]
 gi|291580111|gb|ADE14568.1| peptidase A24A prepilin type IV [Nitrosococcus halophilus Nc4]
          Length = 175

 Score = 35.3 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 15/161 (9%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
            F +  F L  A+  DL S  IPN ++       L+          L++    + L + +
Sbjct: 9   AFSLLGFLLAAASYRDLKSHRIPNVLTFGGALLGLILQVWFLGLEGLLSGLGGLTLGLLL 68

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
               +     MG GDVKLL +   + G        +  + + G ++ + +L VR I   +
Sbjct: 69  YLPFYLLGG-MGAGDVKLLAAVGAFLGAKAILWVAILSL-LAGSVIGMGVLLVRGIFLEV 126

Query: 131 PIFGMFVPKSFLMKNK-------------IPYGIAISMGGL 158
                   K  L+                 PY +AI+ G L
Sbjct: 127 WRPYATTAKFLLLAGTYIPPEINRTLNTRFPYAVAIAAGTL 167


>gi|257386920|ref|YP_003176693.1| peptidase A24B, FlaK domain protein [Halomicrobium mukohataei DSM
           12286]
 gi|257169227|gb|ACV46986.1| Peptidase A24B, FlaK domain protein [Halomicrobium mukohataei DSM
           12286]
          Length = 334

 Score = 35.3 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 13/139 (9%)

Query: 21  FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC------ 74
           +AA  D+ +  +P R  + +    +      G    +    L        + F       
Sbjct: 35  WAAYRDVKTRRVPTRAWLPLAALAIALLAWDGYGAYVGGDRLFFVQAAISLGFIVPLVTA 94

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI-----LGGILSVFILTVRMITNH 129
           F+     GG D K     A+ F   P  + +L    +       G+ S+ IL+  ++   
Sbjct: 95  FWYMGSFGGADTKAFYVLALLFPAYP--IYYLPTTTVPTFQPAIGVFSLTILSNTVVAGA 152

Query: 130 IPIFGMFVPKSFLMKNKIP 148
           +   G+        +  +P
Sbjct: 153 LYPVGVAASNLARGRVGLP 171


>gi|228920117|ref|ZP_04083466.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839573|gb|EEM84865.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 249

 Score = 35.3 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 42/115 (36%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IP+ + I      +L +  + +     ++     + + + C        +GG
Sbjct: 122 VTDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           GD+KLL+      G    F+            L + I   R+       FG F+ 
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFLGIGIGLKRIEVRKPIPFGPFIS 236


>gi|114331043|ref|YP_747265.1| prepilin peptidase [Nitrosomonas eutropha C91]
 gi|114308057|gb|ABI59300.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Nitrosomonas eutropha C91]
          Length = 286

 Score = 35.3 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71
           LI  + ++     DL + ++P+ ++  +L + L+     G  D     +  + G +    
Sbjct: 135 LIFIWAMIILTFIDLNTQLLPDSITQPLLWAGLIVNLHNGFVDIHSAVIGAVAGYLTLWS 194

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W GW    L  L    +   I ++ IL      
Sbjct: 195 VYWLFKLITGKEGMGYGDFKLLAAVGAWLGWQLLPLVILLSSVMGAAIGTILILAANR-- 252

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                              +P+G  ++ GGLI+ 
Sbjct: 253 --------------SKGTTLPFGPYLAGGGLIAL 272


>gi|33596965|ref|NP_884608.1| hypothetical protein BPP2372 [Bordetella parapertussis 12822]
 gi|33566416|emb|CAE37669.1| putative membrane protein [Bordetella parapertussis]
          Length = 176

 Score = 35.3 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS----FLLTAFLLGMDYELIALHLLVG 65
           AV++     +VF    DL    +PNR+ I    +        A+ +       A      
Sbjct: 12  AVYVAFNLLVVF---YDLRVRRVPNRLLIAAALAQCAWLAWHAWGVQATPAAGARGWSDA 68

Query: 66  LIVFIICFCF---FAFNIMGGGDVKLLTSTAVWFGWTP 100
            + F++   F   +   +MG GDVK L    +  G  P
Sbjct: 69  GLGFVLGMAFVLVWRMRLMGAGDVKYLAVLGLAIGACP 106


>gi|254786984|ref|YP_003074413.1| type 4 prepilin-like protein leader peptide-processing enz
           [Teredinibacter turnerae T7901]
 gi|237683637|gb|ACR10901.1| Type 4 prepilin-like protein leader peptide-processing enz
           [Teredinibacter turnerae T7901]
          Length = 294

 Score = 35.3 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 68/161 (42%), Gaps = 23/161 (14%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           +   +  +  +CL+   + D+   ++P+ +++ +L    L A   G+  +L +       
Sbjct: 134 LEGLLVAVFTWCLISLTMIDIDHKLLPDTITLPLLWL-GLLANSGGLFVDLHSALYGAAA 192

Query: 67  IVFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
               +   ++ F +      MG GD KLL +   W GW    L  +   +++G ++ +  
Sbjct: 193 GYLSLWSVYWVFKMLTGKEGMGFGDFKLLAALGAWMGWQMLPL-VIILSSLVGAVIGIAG 251

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
           + ++    ++P               IP+G  +++ G I++
Sbjct: 252 ILIQGRDKNVP---------------IPFGPYLAIAGWIAF 277


>gi|160913561|ref|ZP_02076252.1| hypothetical protein EUBDOL_00037 [Eubacterium dolichum DSM 3991]
 gi|158434113|gb|EDP12402.1| hypothetical protein EUBDOL_00037 [Eubacterium dolichum DSM 3991]
          Length = 248

 Score = 35.3 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 11  VFLIPPFCLVFAALS--DLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELIALHLLVGL 66
           V L+    +V   +S  D  + +IPNR+ ++     +  A +  +    E I   L+V  
Sbjct: 109 VVLVFLLGMVLLCISCIDFDTMLIPNRILVIFGILVIALAEIEPLPSFKERIGGMLIVSG 168

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
            + ++      F   GGGD+KL+       G      +FL  V + GG+ ++
Sbjct: 169 FMLVMNQLIECF---GGGDIKLMFLVGYLLGGRACVFAFLIAV-LTGGVYAI 216


>gi|302384574|ref|YP_003820396.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1]
 gi|302195202|gb|ADL02773.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1]
          Length = 171

 Score = 35.3 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 35/93 (37%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           +++    L   A  D     IPN + +  +    L             L LL  LIV ++
Sbjct: 4   YVVLLLILGTGAFFDAQEHRIPNGLVLWGVIIGFLLEIAGSGKPLAGLLFLLRLLIVTMV 63

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLS 104
            F  F   ++G GD+KL      + G     L+
Sbjct: 64  FFLLFLCRMIGAGDIKLAALICGFLGLRAGALA 96


>gi|210608611|ref|ZP_03287928.1| hypothetical protein CLONEX_00107 [Clostridium nexile DSM 1787]
 gi|210152966|gb|EEA83972.1| hypothetical protein CLONEX_00107 [Clostridium nexile DSM 1787]
          Length = 152

 Score = 35.3 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI----IC 72
             L+  A+ D     IPN    ++LG     A L G  +  I+    +   + +    + 
Sbjct: 12  VILISIAVVDARKKKIPN----ILLGILFFCAVLSGFIFPEISWPDRIAGGILVSVVFLT 67

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
             +      G GDVKL+  + +  G   +  +F F +A+        IL           
Sbjct: 68  VIWIRPGAFGAGDVKLMAISGLMLGVGRNLTAFGFAIALAALYCLPGILRRDRKKESEIA 127

Query: 133 FGMFV 137
           FG F+
Sbjct: 128 FGPFL 132


>gi|114321230|ref|YP_742913.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227624|gb|ABI57423.1| type 4 prepilin peptidase 1 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 293

 Score = 35.3 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 21/159 (13%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGL 66
            +A  L+  + LV  +  DL   ++P+ +++ +L    L+ +  L  +         +G 
Sbjct: 134 ETAAALLLTWTLVALSGIDLDHQLLPDSLTLPLLWAGLLVNSTGLFAELTDAVWGAALGY 193

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +V    F  F        MG GD KLL +   W GW    L  L    + G  + + ++ 
Sbjct: 194 LVLWGVFHAFRLLTGKEGMGYGDFKLLAALGAWLGWQALPLIILLSSLV-GAAVGIALIA 252

Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
           ++     +P               IP+G  I+  G I+ 
Sbjct: 253 LKGRGREVP---------------IPFGPYIAAAGFITL 276


>gi|222530416|ref|YP_002574298.1| peptidase A24A prepilin type IV [Caldicellulosiruptor bescii DSM
           6725]
 gi|222457263|gb|ACM61525.1| peptidase A24A prepilin type IV [Caldicellulosiruptor bescii DSM
           6725]
          Length = 147

 Score = 35.3 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M    + ++    L FAA+ D     IPN   +++L        +L  ++  + +  +  
Sbjct: 1   MSKVILSVLLILILSFAAVYDFKKREIPNIAVVLLLFV-AAVKVILNRNFGNVIIFAIYT 59

Query: 66  LIVFIICFCFFAFNI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
           L +    F      I  +G GD+KLL++ +++FG+   FL  L    I G
Sbjct: 60  LFLLATYFFSEKRGIYLLGEGDIKLLSALSLYFGFD--FLKVLLLTCISG 107


>gi|313884755|ref|ZP_07818510.1| bacterial peptidase A24, N-terminal domain protein [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312620016|gb|EFR31450.1| bacterial peptidase A24, N-terminal domain protein [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 225

 Score = 35.3 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 5/136 (3%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           S  + +    L      DL    IP+   I +        F   + +  I+ H    L +
Sbjct: 94  SLYYYLFYSILFLMICFDLSYQYIPDLFQIGLFILLFYNYFTFRLLF--ISYHHFFILFI 151

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
             I + FF  N +GG D+KL+    V   +   F+ + FF+A   G+    I  VR I  
Sbjct: 152 LTILYFFFT-NYIGGADLKLIGILCVCLPFE--FIPYFFFLAASSGLCCCLITKVRQIPF 208

Query: 129 HIPIFGMFVPKSFLMK 144
              +   F+P   L++
Sbjct: 209 VPFLVLAFLPLHILLQ 224


>gi|325111213|ref|YP_004272281.1| peptidase A24A prepilin type IV [Planctomyces brasiliensis DSM
           5305]
 gi|324971481|gb|ADY62259.1| peptidase A24A prepilin type IV [Planctomyces brasiliensis DSM
           5305]
          Length = 188

 Score = 35.3 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 10/143 (6%)

Query: 8   FSAVFLIPPFCLVFAA-LSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65
            + VF++       AA   D     IPN++++ +    ++      G+    +A   L  
Sbjct: 5   EAIVFVVFVTAYTLAATWWDQVYWKIPNKLTLPMFFAGWVYQGVFNGLP--GLADGALGF 62

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
           LI F   F  +     GGGDVKL+ + +VW G+  S   F+    +      V +L + +
Sbjct: 63  LIGFGFLFIIWIIGSGGGGDVKLMGALSVWLGFQWSIYVFVISTFL------VSVLAIGI 116

Query: 126 ITNHIPIFGMFVPKSFLMKNKIP 148
           +  +I   G    K  L+    P
Sbjct: 117 VGWNIMSKGTKATKKKLLATGKP 139


>gi|167902902|ref|ZP_02490107.1| family A24A unassigned peptidase [Burkholderia pseudomallei NCTC
           13177]
          Length = 109

 Score = 35.3 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 1/88 (1%)

Query: 62  LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
           ++ G +  +  F FFA  +MG  DVK+      W G  P+        ++  G+ ++ ++
Sbjct: 1   MIGGAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGL-PALPRLWVVASVAAGVHALALM 59

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPY 149
            +          G     +   +   PY
Sbjct: 60  LLTRTPPGSLGRGDAPAFALGARRAAPY 87


>gi|313895200|ref|ZP_07828757.1| peptidase, A24 family [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976095|gb|EFR41553.1| peptidase, A24 family [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 189

 Score = 35.3 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +    L++ A  D+    + +   I +  +F    F  G     +   +L G +  ++ +
Sbjct: 44  LFSAVLLWLAFLDVRDGFLYD--CITLPFAFAGVVFSAGGLTMPLIDAILGGTLCGVLFY 101

Query: 74  CFF--AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
           C +  A   MGGGDVK      +W GW  + ++ ++   ++GG+++ F+L  R       
Sbjct: 102 CLYIAARGGMGGGDVKFALGIGLWLGWESAIIA-VWTAFLIGGMMAAFLLLTRRKGRRDA 160

Query: 132 IF 133
           + 
Sbjct: 161 LP 162


>gi|196040651|ref|ZP_03107950.1| late competence protein comC [Bacillus cereus NVH0597-99]
 gi|196046431|ref|ZP_03113656.1| late competence protein comC [Bacillus cereus 03BB108]
 gi|225863267|ref|YP_002748645.1| late competence protein comC [Bacillus cereus 03BB102]
 gi|196022615|gb|EDX61297.1| late competence protein comC [Bacillus cereus 03BB108]
 gi|196028441|gb|EDX67049.1| late competence protein comC [Bacillus cereus NVH0597-99]
 gi|225787313|gb|ACO27530.1| late competence protein comC [Bacillus cereus 03BB102]
          Length = 240

 Score = 35.3 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +     ++     + + + C        +GG
Sbjct: 113 VTDYIYMLIPNRILAWFCCLLILECVFVPLVTWTESIVGSGVIFILLYCMRKIYPEGLGG 172

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KLL+      G    F+              V ++  RM                 M
Sbjct: 173 GDIKLLSLLGFIVGLKGIFMILFLSSFFSLCFFGVGLVLKRM----------------KM 216

Query: 144 KNKIPYGIAISMGGL 158
           + +IP+G  IS+G +
Sbjct: 217 RTQIPFGPFISLGAI 231


>gi|297201611|ref|ZP_06919008.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC
           29083]
 gi|297147933|gb|EDY55052.2| radical SAM domain-containing protein [Streptomyces sviceus ATCC
           29083]
          Length = 391

 Score = 35.3 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 11/115 (9%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLLVGLIVFIICF-CFFAF--NI 80
           DL    +P+ +++ +  + L    ++    E      H L G +     +   +      
Sbjct: 257 DLRVRRLPDPLTLPLAAAALALLGVVSFVPEHTGSWSHALFGALALGAGYWVLWRVNPGG 316

Query: 81  MGGGDVKL---LTSTAVWFGWTPSFLSF---LFFVAILGGILSVFILTVRMITNH 129
           MG GDVKL     +   W+GW    L         A+ GG L +     R     
Sbjct: 317 MGFGDVKLALGAGAVLGWYGWDTVLLGTFAGFLLGALYGGALVLVGKAGRKTAIP 371


>gi|217964303|ref|YP_002349981.1| type IV leader peptidase family protein [Listeria monocytogenes
           HCC23]
 gi|217333573|gb|ACK39367.1| type IV leader peptidase family protein [Listeria monocytogenes
           HCC23]
          Length = 236

 Score = 35.3 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           V+ I  + L F  ++D+F   +PN + IV   + ++ AFL            ++    ++
Sbjct: 99  VYCIIYYFLAFFFITDIFYMYVPNSILIVFSCALIILAFLYNQPLIDFIYSSILSCFFYL 158

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           + F  F    +G GD+K+L   + + G+   +  F   + +   IL   +L  R+  N 
Sbjct: 159 LFFIIFRKG-IGLGDIKILIILSSFLGFKTGYYIFFLAIILGTIILFTALLLKRVKKNK 216


>gi|71064643|ref|YP_263370.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Psychrobacter arcticus 273-4]
 gi|71037628|gb|AAZ17936.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Psychrobacter arcticus 273-4]
          Length = 299

 Score = 35.3 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           LI  + LV     D  + ++P+R++  + G    + +    +        LL+G +   I
Sbjct: 149 LILVWTLVVLTGIDFDTQLLPDRLTFPLAGLGLAVNSQGWFVSPTQSIWGLLLGFLSLWI 208

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
               F      + MG GD KLL     W G     L  +   ++LG I+ + ++
Sbjct: 209 VVKIFYLITKKHGMGQGDFKLLAVLGAWLGPVMLPL-VILLSSLLGSIVGLILI 261


>gi|206577659|ref|YP_002236278.1| peptidase, A24 (type IV prepilin peptidase) family [Klebsiella
           pneumoniae 342]
 gi|288933264|ref|YP_003437323.1| peptidase A24A prepilin type IV [Klebsiella variicola At-22]
 gi|290512067|ref|ZP_06551435.1| leader peptidase HopD [Klebsiella sp. 1_1_55]
 gi|206566717|gb|ACI08493.1| peptidase, A24 (type IV prepilin peptidase) family [Klebsiella
           pneumoniae 342]
 gi|288887993|gb|ADC56311.1| peptidase A24A prepilin type IV [Klebsiella variicola At-22]
 gi|289775857|gb|EFD83857.1| leader peptidase HopD [Klebsiella sp. 1_1_55]
          Length = 161

 Score = 35.3 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 16/160 (10%)

Query: 6   MVFSAVFLI-PPFCLVFAALSDLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHLL 63
           M+ +  FL+      +     DL   ++P+R    ++    L    L            L
Sbjct: 1   MLAALPFLLCYSGLTLALCQQDLRYGLLPDRFTCPLLWSGLLFYLCLAPHQLNEAVWGAL 60

Query: 64  VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
            G + F   +  +        +G GD+K L +   W GW       L    + G    + 
Sbjct: 61  AGYLSFAALYWLYRRVRGHEGLGYGDIKYLAALGAWHGWRMLPQLVLVASLLAGMTWVIL 120

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
            L+ R   N          + +   N +P+G  ++  G  
Sbjct: 121 GLSARCGGN----------RKWEKNNPLPFGPFLAAAGFW 150


>gi|325276681|ref|ZP_08142407.1| peptidase A24A prepilin type IV [Pseudomonas sp. TJI-51]
 gi|324098188|gb|EGB96308.1| peptidase A24A prepilin type IV [Pseudomonas sp. TJI-51]
          Length = 156

 Score = 35.3 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL--VGLIVFI 70
           ++    L   +  D+    I N +++ +    LL  F  G  +             IV +
Sbjct: 4   IVLLLWLALCSEQDVRQRQISNLLTLGVASCALLWLFATGHSWMGADASDAGWALAIVML 63

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
           +    + +   G  DVKL+ + A+  G      +F+
Sbjct: 64  LTLPGYMYGHFGADDVKLMGALALASGTQYVLGTFI 99


>gi|119472645|ref|ZP_01614636.1| Type 4 prepilin-like proteins leader peptide processing enzyme
           [Alteromonadales bacterium TW-7]
 gi|119444849|gb|EAW26150.1| Type 4 prepilin-like proteins leader peptide processing enzyme
           [Alteromonadales bacterium TW-7]
          Length = 297

 Score = 35.3 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGL 66
            + ++++  + LV     D+   ++P+++++ ++   L  A   + +      +    G 
Sbjct: 139 QALLYIVITWALVALTFIDIDHMLLPDQLTLPLVWLALTAAVAGITITPSDAIMGAAFGY 198

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
           +     F  F        MG GD KLL       GW  S L+ +   +++G I+ + +L+
Sbjct: 199 LSLWSVFWLFKLLTGKEGMGHGDFKLLALFGALLGW-QSLLTIILLSSVVGAIIGIALLS 257

Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            +      P               IP+G  +++ G I+ 
Sbjct: 258 TQGKDKATP---------------IPFGPYLAIAGWITL 281


>gi|294338833|emb|CAZ87167.1| Type 4 prepilin-like proteins leader peptide-processing enzyme
           (Protein secretion protein XCPA) (Protein pilD)
           [Includes: Leader peptidase (Prepilin peptidase);
           N-methyltransferase] [Thiomonas sp. 3As]
          Length = 289

 Score = 35.3 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLI 67
           S  +++  + L+  AL D  + ++P+ +++ +L   LL    L  +          VG +
Sbjct: 131 SLAYIVLLWALITLALIDFDTTLLPDSITLPLLWLGLLWHAWLHPEQLSSAVWGAAVGYL 190

Query: 68  VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
                +  F        MG GD KLL +   WFG   + L  +   +I G ++ + +  +
Sbjct: 191 ALWTVYQGFKLLTGKEGMGFGDFKLLAALGAWFGVA-ALLPIILLSSICGAVIGIALQLL 249

Query: 124 RMITNHIPIF 133
           ++     PI 
Sbjct: 250 KLTERGRPIP 259


>gi|296134879|ref|YP_003642121.1| Prepilin peptidase [Thiomonas intermedia K12]
 gi|295795001|gb|ADG29791.1| Prepilin peptidase [Thiomonas intermedia K12]
          Length = 289

 Score = 35.3 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLI 67
           S  +++  + L+  AL D  + ++P+ +++ +L   LL    L  +          VG +
Sbjct: 131 SLAYIVLLWALITLALIDFDTTLLPDSITLPLLWLGLLWHAWLHPEQLSSAVWGAAVGYL 190

Query: 68  VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
                +  F        MG GD KLL +   WFG   + L  +   +I G ++ + +  +
Sbjct: 191 ALWTVYQGFKLLTGKEGMGFGDFKLLAALGAWFGVA-ALLPIILLSSICGAVIGIALQLL 249

Query: 124 RMITNHIPIF 133
           ++     PI 
Sbjct: 250 KLTERGRPIP 259


>gi|227328706|ref|ZP_03832730.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 281

 Score = 35.3 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 24  LSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN--- 79
           + D+ + ++P+ +++ +L    L       +      +  + G +   + +  F +    
Sbjct: 148 VIDIKTLLLPDVLTLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGK 207

Query: 80  -IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             +G GD KLL +   W GW  +  + +   A+ G ++++    +R      P+ 
Sbjct: 208 EALGYGDFKLLAALGAWLGW-QALPNLVLVAALSGLVVTLIWRGLRKEDTAKPLA 261


>gi|229195601|ref|ZP_04322367.1| Peptidase A24A domain protein [Bacillus cereus m1293]
 gi|228587850|gb|EEK45902.1| Peptidase A24A domain protein [Bacillus cereus m1293]
          Length = 249

 Score = 35.3 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 4/116 (3%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +   + ++     + + + C        +GG
Sbjct: 122 VTDYIYMLIPNRILAWFACLLILECAFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135
           GD+KLL+      G    F+             G  L +  + +R      P   +
Sbjct: 182 GDIKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKRMKMRTQIPFGPFISL 237


>gi|303239392|ref|ZP_07325920.1| peptidase A24A prepilin type IV [Acetivibrio cellulolyticus CD2]
 gi|302593178|gb|EFL62898.1| peptidase A24A prepilin type IV [Acetivibrio cellulolyticus CD2]
          Length = 208

 Score = 35.3 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 4/132 (3%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLI 67
           S  ++I    L  A++ D+ + +IPN++ ++ ++   +L            +L   V   
Sbjct: 68  SLSYMILTAILFAASIKDIQNRIIPNKLIVLGLILGVILNCLFFSFGRIADSLTTFVLAG 127

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL---FFVAILGGILSVFILTVR 124
             ++   F +   +G GD KL+  T +  G   +    +      A+ G    +F    R
Sbjct: 128 GILLSISFVSKGGLGIGDAKLIACTGMLLGAQKTISVMIISFLASALFGVFSVLFKKLNR 187

Query: 125 MITNHIPIFGMF 136
                   F +F
Sbjct: 188 KSAMAFAPFVLF 199


>gi|218887829|ref|YP_002437150.1| peptidase A24A prepilin type IV [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758783|gb|ACL09682.1| peptidase A24A prepilin type IV [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 196

 Score = 35.3 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 8/139 (5%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVS-----IVMLGSFLLTAFLLGMD--YELIALHLLVGLI 67
               L+ A  +DL +  IPN ++       +  +  L A+  G+   ++ +   L    +
Sbjct: 9   LAVVLLVAVTTDLRAMRIPNWLTFPAMLAGVAANAALGAWTGGLSGAWDGLLFSLSGFGL 68

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
              +    F   +MG GDVKLL +   + G    F +F+ + ++ GG+ ++ +L   +  
Sbjct: 69  GLGLMLIPFLLRVMGAGDVKLLAAAGAFLGAETVFRAFI-WTSLAGGVYALGVLAFHLPQ 127

Query: 128 NHIPIFGMFVPKSFLMKNK 146
               +  + V    L    
Sbjct: 128 LRAVLRSLRVSVELLAVTG 146


>gi|110833473|ref|YP_692332.1| leaderpeptidase and N-methyltransferase [Alcanivorax borkumensis
           SK2]
 gi|110646584|emb|CAL16060.1| Leaderpeptidase and N-methyltransferase [Alcanivorax borkumensis
           SK2]
          Length = 291

 Score = 35.3 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67
           A  L   + L+ AA+ D  + ++P+ ++  +L + LL A   +  +      +  ++G +
Sbjct: 135 AFTLFATWVLLAAAMIDADTTLLPDTLNYWLLWAGLLAAVTGVSPVSLNDAVIGAMMGYL 194

Query: 68  VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
                +  F        MG GD KLL +   W GW       +   +I+G + ++ ++  
Sbjct: 195 SLWSIYWLFKLITGKEGMGYGDFKLLAALGAWVGW-QYLPVIILLSSIVGLVFAIAMMIF 253


>gi|94263266|ref|ZP_01287082.1| Prepilin peptidase [delta proteobacterium MLMS-1]
 gi|93456349|gb|EAT06473.1| Prepilin peptidase [delta proteobacterium MLMS-1]
          Length = 270

 Score = 35.3 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           V+ I    L+     DL   +IP+ +S+  +   F       G+ ++   L +L+G   F
Sbjct: 115 VYFIFSAALLAIFFIDLDHQLIPDVISLPGIALGFAAALLPGGIGWQAAGLGILLGGGSF 174

Query: 70  IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +    +        MGGGD+KLL     + GW    L F+   + L G++      VR 
Sbjct: 175 YLVALGYYLITRREGMGGGDIKLLAMLGAFLGW--QALPFIILASSLLGLVVGVGAMVRQ 232


>gi|117918874|ref|YP_868066.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Shewanella sp. ANA-3]
 gi|117611206|gb|ABK46660.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Shewanella sp. ANA-3]
          Length = 309

 Score = 35.3 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVGLIVFIIC 72
           +  F L+     DL   ++P+++++ +L   LL              +    G +     
Sbjct: 159 VLTFVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTTPTDAVIGAAAGYLSLWSV 218

Query: 73  FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           F  F        MG GD KLL     W GW    L  +   +++G ++ + ++ ++    
Sbjct: 219 FWLFKLLTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGALVGITLIVLKRNQL 277

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
             P               IP+G  I+  G I+ 
Sbjct: 278 ANP---------------IPFGPYIAAAGWIAL 295


>gi|42780493|ref|NP_977740.1| late competence protein comC [Bacillus cereus ATCC 10987]
 gi|42736412|gb|AAS40348.1| late competence protein comC [Bacillus cereus ATCC 10987]
          Length = 240

 Score = 35.3 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 4/116 (3%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +   + ++     + + + C        +GG
Sbjct: 113 VTDYIYMLIPNRILAWFACLLILECVFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGLGG 172

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135
           GD+KLL+      G    F+             G  L +  + +R      P   +
Sbjct: 173 GDIKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKRMKMRTQIPFGPFISL 228


>gi|290893951|ref|ZP_06556927.1| comC protein [Listeria monocytogenes FSL J2-071]
 gi|290556489|gb|EFD90027.1| comC protein [Listeria monocytogenes FSL J2-071]
          Length = 236

 Score = 35.3 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           V+ I  + L F  ++D+F   +PN + IV   + ++ AFL            ++    ++
Sbjct: 99  VYCIIYYFLAFFLITDIFYMYVPNSILIVFSCALIILAFLYNQPLIDFIYSSMLSCFFYL 158

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           + F  F    +G GD+K+L   + + G+   +  F   + +   IL   +L  R+  N 
Sbjct: 159 LFFIIFRKG-IGLGDIKILIILSSFLGFKTGYYIFFLAIILGTIILFTALLLKRVKKNK 216


>gi|113968762|ref|YP_732555.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Shewanella sp. MR-4]
 gi|113883446|gb|ABI37498.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Shewanella sp. MR-4]
          Length = 308

 Score = 35.3 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVGLIVFIIC 72
           +  F L+     DL   ++P+++++ +L   LL              +    G +     
Sbjct: 158 VLTFVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTTPTDAVIGAAAGYLSLWSV 217

Query: 73  FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           F  F        MG GD KLL     W GW    L  +   +++G ++ + ++ ++    
Sbjct: 218 FWLFKLLTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGALVGITLIVLKRNQL 276

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
             P               IP+G  I+  G I+ 
Sbjct: 277 ANP---------------IPFGPYIAAAGWIAL 294


>gi|110666997|ref|YP_656808.1| prepilin signal peptidase [Haloquadratum walsbyi DSM 16790]
 gi|109624744|emb|CAJ51151.1| probable prepilin signal peptidase [Haloquadratum walsbyi DSM
           16790]
          Length = 345

 Score = 34.9 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 18/122 (14%)

Query: 18  CLVFAALSDLFSAMIPNRV------SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
            LV+AA  D+ +  +P+ +        V+L  +  + +  G+      + +     V + 
Sbjct: 16  ILVWAAWRDVKTRRLPSYLWPPLVMLGVVLLVWDTSVYFSGLSPIYTPIAIAFLFRVSVS 75

Query: 72  C-------FCFFAFNIMGGGDVKLLTSTAVWFGWTPSF----LSFLFFVAILGGILSVFI 120
           C       +  +A    GG D K+L + A+     P +    ++F    A LG + S+ I
Sbjct: 76  CLIIIPLSYGLWAIGGFGGADAKVLMTLAILIPTVPIYQFLGMTFPVVTAPLG-VFSLTI 134

Query: 121 LT 122
           LT
Sbjct: 135 LT 136


>gi|326939029|gb|AEA14925.1| ComC protein [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 222

 Score = 34.9 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IP+ + I      +L +  + +     ++     + + + C        +GG
Sbjct: 95  VTDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 154

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KLL+      G    F+              V I+  R                  +
Sbjct: 155 GDIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGVGIVLKR----------------IEV 198

Query: 144 KNKIPYGIAISMGGL 158
           +  IP+G  IS+G +
Sbjct: 199 RKPIPFGPFISLGAI 213


>gi|253996772|ref|YP_003048836.1| peptidase A24A prepilin type IV [Methylotenera mobilis JLW8]
 gi|253983451|gb|ACT48309.1| peptidase A24A prepilin type IV [Methylotenera mobilis JLW8]
          Length = 191

 Score = 34.9 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 26/158 (16%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE---------LIALHLLVGLIVFIICFCFF 76
           D+ S  I N++ +V +   L+   LL                   L    +   +    +
Sbjct: 25  DVNSHRISNKLVLVGVFIGLVLNGLLPEGLGFNSQVPGALGWLAALKGLAVAMAVFLPLY 84

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF----------------I 120
               MG GDVKL+     + G     L  +    + GG++++                 +
Sbjct: 85  LLRAMGAGDVKLMGMVGTFIGPND-VLGAVLATLVAGGVMALLVTMWSKQLGAMLQNVKL 143

Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158
           +               +    +   K+PY +AI++G  
Sbjct: 144 IFYGSAVKLSIGQAPLMNDLPVSVRKLPYALAITLGTF 181


>gi|154503359|ref|ZP_02040419.1| hypothetical protein RUMGNA_01183 [Ruminococcus gnavus ATCC 29149]
 gi|153796026|gb|EDN78446.1| hypothetical protein RUMGNA_01183 [Ruminococcus gnavus ATCC 29149]
          Length = 153

 Score = 34.9 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%)

Query: 6   MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
           M+   +  I  F  V  ++SD  +  IP+R +  +L   +L A +         +  +  
Sbjct: 1   MMTMLLKSILIFIFVVISISDWRTHKIPDRWNAGILLVAVLLALVDPSVSWQERILGMFA 60

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
           + V + C  FF     GGGD+K + +  V  G     +     + + G
Sbjct: 61  VSVPMACLLFFVPGSFGGGDIKFVAAVGVAIGVKLVVMGSAAAILLAG 108


>gi|206576910|ref|YP_002240378.1| pullulanase secretion protein PulO [Klebsiella pneumoniae 342]
 gi|288937083|ref|YP_003441142.1| prepilin peptidase [Klebsiella variicola At-22]
 gi|290512504|ref|ZP_06551870.1| general secretion pathway protein O [Klebsiella sp. 1_1_55]
 gi|206565968|gb|ACI07744.1| pullulanase secretion protein PulO [Klebsiella pneumoniae 342]
 gi|288891792|gb|ADC60110.1| Prepilin peptidase [Klebsiella variicola At-22]
 gi|289774845|gb|EFD82847.1| general secretion pathway protein O [Klebsiella sp. 1_1_55]
          Length = 266

 Score = 34.9 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 8/127 (6%)

Query: 26  DLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NI 80
           D  + ++P+R+++ +L    L     + +         + G +     +  F        
Sbjct: 136 DARTQLLPDRLTLPLLWAGLLFNLNEVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEA 195

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140
           +G GD KLL +   W GW       L   +  G + ++        +   P+   F P  
Sbjct: 196 LGYGDFKLLAALGAWCGW-QVLPQVLLLASACGLVWTLLQRLWTRQSLQQPLA--FGPWL 252

Query: 141 FLMKNKI 147
            L    I
Sbjct: 253 ALAGGGI 259


>gi|49479782|ref|YP_035532.1| late competence protein (includes: leader peptidase;
           N-methyltransferase) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49331338|gb|AAT61984.1| late competence protein (includes: leader peptidase;
           N-methyltransferase) [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 240

 Score = 34.9 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 4/116 (3%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +     ++     + + + C        +GG
Sbjct: 113 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 172

Query: 84  GDVKLLTSTAVWFG----WTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135
           GD+KLL+      G    +   FLS  F +   G  L++  + +R      P   +
Sbjct: 173 GDIKLLSLLGFIAGLKGVFMILFLSSFFSLCFFGAGLALKRIKMRTQIPFGPFISL 228


>gi|167036507|ref|YP_001664085.1| peptidase A24A, prepilin type IV [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|320114936|ref|YP_004185095.1| peptidase A24A prepilin type IV [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
 gi|166855341|gb|ABY93749.1| peptidase A24A, prepilin type IV [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|319928027|gb|ADV78712.1| peptidase A24A prepilin type IV [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
          Length = 128

 Score = 34.9 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
          ++    L FAA+ D+    +       +L    +   L    Y  +   LL  L++FI+ 
Sbjct: 3  ILILLILFFAAVEDIKKMEVGYIYPASILILSFINVLLN--PYINLNFMLLNSLLIFIVL 60

Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGW 98
          F F+    +GGGDVK+LT+ A + G+
Sbjct: 61 FLFWLLGGIGGGDVKILTALAFYAGF 86


>gi|313106813|ref|ZP_07793026.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa 39016]
 gi|310879528|gb|EFQ38122.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa 39016]
          Length = 140

 Score = 34.9 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 42/132 (31%), Gaps = 2/132 (1%)

Query: 30  AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF--FAFNIMGGGDVK 87
             + N + +       +  ++         +++ +  +   +C     +    +G  DVK
Sbjct: 1   MRVSNWLILGGFLISFVYLYVKESSLTGATVNMAMTALFIGVCLSLPGYLLGRLGAADVK 60

Query: 88  LLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKI 147
            L +  +         S  F   +   +  +  L  R +        + + ++       
Sbjct: 61  YLAALGLASDPLTVLYSLAFGCLLCIALFILVKLFKRSVEKSAMNEEVRLRRAPSKNKSF 120

Query: 148 PYGIAISMGGLI 159
           P+  A+S G L 
Sbjct: 121 PFIFAMSAGLLA 132


>gi|300088227|ref|YP_003758749.1| prepilin peptidase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527960|gb|ADJ26428.1| Prepilin peptidase [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 256

 Score = 34.9 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 7/128 (5%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-----MDYELIALHLLVG 65
           + L     +V   + D+   +I N + +  +   L+ +   G            +  + G
Sbjct: 102 LSLFYAALMVVIFVIDMEHQVILNNILLPAIIIALVVSLFSGQIETVPSVLNAIIGAVAG 161

Query: 66  LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
             +F++ +   +   MG GDVKL        GW P+ ++ +    I  G++++ +L  R 
Sbjct: 162 FGIFLVVYIV-SRGGMGEGDVKLGALAGAITGW-PNIMAAVILSWIASGLVAIALLAFRR 219

Query: 126 ITNHIPIF 133
                 I 
Sbjct: 220 KGRREAIA 227


>gi|56477531|ref|YP_159120.1| Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
 gi|56313574|emb|CAI08219.1| hypothetical protein, Flp pilus assembly protein, protease
           [Aromatoleum aromaticum EbN1]
          Length = 188

 Score = 34.9 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 10/130 (7%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLT---------AFLLGMDYELIALHLLVGLIVFIICFC 74
           ++DL +  IPNR+ +  L S  +           F      + +++      +       
Sbjct: 16  ITDLLTRRIPNRLILAGLVSGFVLHMADLPGAALFATADSIDGVSVAFGGLAVGLAGMLP 75

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
            +    MG GDVKL+     + G   +F   +      GGIL++ +   +     + +  
Sbjct: 76  LYFLRAMGAGDVKLMMMVGAFLGPLQTF-GVVVLTFAAGGILALGMALWQRSFAQLALNL 134

Query: 135 MFVPKSFLMK 144
            F+  +  ++
Sbjct: 135 RFMLTTSAVR 144


>gi|219558555|ref|ZP_03537631.1| shikimate 5-dehydrogenase [Mycobacterium tuberculosis T17]
          Length = 412

 Score = 34.9 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           +    + D+    +PN +++   G  LL A L G     +A    +  +  ++     A 
Sbjct: 283 MGVLCVCDVRQRRLPNWLTLPGAGVILLFAGLAGRGVPALAGAAALAGVYLLVHLALPA- 341

Query: 79  NIMGGGDVKLL 89
             MG GDVKL 
Sbjct: 342 -AMGAGDVKLA 351


>gi|320101399|ref|YP_004176991.1| peptidase A24A prepilin type IV [Desulfurococcus mucosus DSM 2162]
 gi|319753751|gb|ADV65509.1| peptidase A24A prepilin type IV [Desulfurococcus mucosus DSM 2162]
          Length = 264

 Score = 34.9 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 54/147 (36%), Gaps = 11/147 (7%)

Query: 2   KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
               ++ +   +     L   +L D  S  I +R+  +  G   +      M +    ++
Sbjct: 6   DPVNLLEAVKAVYTLVFLGVFSLQDYRSREISDRLVYLFTGGSAVFLAATLMLHGFDPVY 65

Query: 62  LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG-----------WTPSFLSFLFFVA 110
           ++   +V +     +   +MG GDV ++ S  + +              P  +  + +  
Sbjct: 66  MVFSAVVPLTFTLLYYTGLMGEGDVYVVASLFMLYPSPPRAGFLPRSLLPPLIPIVLYST 125

Query: 111 ILGGILSVFILTVRMITNHIPIFGMFV 137
           +   ++S+   +  +I +   + GM +
Sbjct: 126 VSVVLISLLYASYTVIVHRNLLKGMPL 152


>gi|218961045|ref|YP_001740820.1| putative bifunctional prepilin leader peptidase and methylase
           [Candidatus Cloacamonas acidaminovorans]
 gi|167729702|emb|CAO80614.1| putative bifunctional prepilin leader peptidase and methylase
           [Candidatus Cloacamonas acidaminovorans]
          Length = 242

 Score = 34.9 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 8/101 (7%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM---- 81
           D    +IPN +SI +L + ++  F+ G D  +I   +   ++  ++ F  +A+  +    
Sbjct: 107 DALHQIIPNVLSIPLLITGIIFVFIPGNDVGIINGLVTGAVVFCLLLFLAWAYQKIRGTE 166

Query: 82  --GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
             GGGD+ L T+ A +FG T   + ++F ++ L GI+   I
Sbjct: 167 GLGGGDIWLFTALATYFGLTG--IPYIFLLSALMGIIYFLI 205


>gi|150398940|ref|YP_001322707.1| peptidase A24B, FlaK-like protein [Methanococcus vannielii SB]
 gi|150011643|gb|ABR54095.1| Peptidase A24B, FlaK-like protein [Methanococcus vannielii SB]
          Length = 234

 Score = 34.9 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL---IALHLLVGLIV 68
          ++I    L+ A+  DL    I + + I M     + A  L         +   +   +I 
Sbjct: 8  YIIGAVGLLLASFQDLKKREIEDYIWISMSVIGFIYAIYLSYTLSDYNFLLNSVSGFVIC 67

Query: 69 FIICFCFFAFNIMGGGDVKLL 89
          F++ +  F    +GGGD K+L
Sbjct: 68 FVLGYLMFLLG-IGGGDGKIL 87


>gi|45357795|ref|NP_987352.1| hypothetical protein MMP0232 [Methanococcus maripaludis S2]
 gi|45047355|emb|CAF29788.1| Conserved Hypthetical Protein [Methanococcus maripaludis S2]
          Length = 346

 Score = 34.9 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 7  VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
          +   V+L     ++ A  +D+   +IP+ V I+ML   L   +     ++ I       +
Sbjct: 7  LILGVYLFNFLLILTATYTDIKERIIPHFVIILMLIVNLPIGYYF-FGFDAITSFFATLI 65

Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTA 93
          +  I+         MGGGDVK+ T+ +
Sbjct: 66 LCLILGVG------MGGGDVKMFTALS 86


>gi|150403154|ref|YP_001330448.1| peptidase A24A prepilin type IV [Methanococcus maripaludis C7]
 gi|150034184|gb|ABR66297.1| peptidase A24A prepilin type IV [Methanococcus maripaludis C7]
          Length = 346

 Score = 34.9 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 7  VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
          +   V+L+    ++ A  +D+   +IP+ V I+ML   L       + Y       ++  
Sbjct: 7  LILGVYLLNFLLILTATFTDIKERIIPHFVIILMLIVNLP------IGYYFFGFDAIISF 60

Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTA 93
             +I         MGGGDVK+ T+ +
Sbjct: 61 FATLILCLILGVG-MGGGDVKMFTAIS 86


>gi|194366950|ref|YP_002029560.1| Prepilin peptidase [Stenotrophomonas maltophilia R551-3]
 gi|194349754|gb|ACF52877.1| Prepilin peptidase [Stenotrophomonas maltophilia R551-3]
          Length = 287

 Score = 34.9 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
           ++    L+  +  DL + ++P+++++ ++   L+ +   L M  +   +   VG +    
Sbjct: 133 IVLTCFLIALSGIDLRTQLLPDQLTLPLMWLGLIGSIDNLYMPAKPALVGAAVGYLSLWT 192

Query: 72  CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   ++LG I+    L  R   
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILLSSVLGAIIGSIWLYSRGRD 251

Query: 128 NHIPIF 133
              PI 
Sbjct: 252 RATPIP 257


>gi|91204076|emb|CAJ71729.1| similar to type IV prepilin-like proteins leader peptide processing
           enzyme [Candidatus Kuenenia stuttgartiensis]
          Length = 262

 Score = 34.9 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 43/172 (25%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-------------------- 51
           +L     L+ +A  DL   +IPN ++ + +  F++ + +                     
Sbjct: 82  YLALCCALIISAFVDLELRIIPNEITFIGIPVFVVLSIVCPDLHHAQNTLRRFTFIDIHR 141

Query: 52  --GMDYELIALHLLVGLIVF--IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLF 107
                  LI +    GLI    ++    F  + MG GDVKL+                  
Sbjct: 142 LDSFIASLIGIFTGGGLIFLCGVMGKLLFKKDAMGFGDVKLMG----------------M 185

Query: 108 FVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
             A++G  L+V +  V      +    +FV K   +   IPYG  +S+  L+
Sbjct: 186 IGAVVGWKLAVAVFFVAPFFGLLMAIPVFVFKKSHL---IPYGPFLSIAALV 234


>gi|258620022|ref|ZP_05715062.1| Type 4 prepilin-like protein leader peptide-processing enzyme
           [Vibrio mimicus VM573]
 gi|258587755|gb|EEW12464.1| Type 4 prepilin-like protein leader peptide-processing enzyme
           [Vibrio mimicus VM573]
          Length = 533

 Score = 34.9 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           + S V L   F L    + D  S ++PN ++  +    L   ++       +   ++ G 
Sbjct: 383 IDSFVLLGLYFILFNLFVIDFKSMLLPNLLTYPIF--MLAFIYVQQNPALTVESSIMGGF 440

Query: 67  IVFIICFC------FFA-FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
             FII +       FF   ++MG GD+KL T+     G    F+ +LF ++
Sbjct: 441 AAFIISYVSNVIVRFFKKIDVMGAGDIKLYTALGTLIGVE--FVPYLFLLS 489


>gi|238562620|ref|ZP_04610142.1| peptidase A24A, prepilin type IV [Burkholderia mallei GB8 horse 4]
 gi|238522206|gb|EEP85652.1| peptidase A24A, prepilin type IV [Burkholderia mallei GB8 horse 4]
          Length = 135

 Score = 34.9 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 57  LIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116
            ++  L+ G +  +  F FFA  +MG  DVK+      W G + +        ++  G+ 
Sbjct: 22  TLSGALIGGAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGLS-ALPRLWVVASVAAGVH 80

Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149
           ++ ++ +          G     +   +   PY
Sbjct: 81  ALALMLLTRTPPGSLGRGGAPAFALGARRAAPY 113


>gi|20807715|ref|NP_622886.1| Signal peptidase, cleaves prepilin-like proteins
           [Thermoanaerobacter tengcongensis MB4]
 gi|20516267|gb|AAM24490.1| Signal peptidase, cleaves prepilin-like proteins
           [Thermoanaerobacter tengcongensis MB4]
          Length = 252

 Score = 34.9 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 38/92 (41%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           V +  ++     L+ A+  DL   +IPN + I      L+   L+     L  +   +  
Sbjct: 98  VKAFSYMFLSSVLISASFIDLEHKIIPNSIIIAGFIGALIFRLLMYSYGFLDYILGFLLG 157

Query: 67  IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW 98
              ++     +   MGGGDVKL+     + GW
Sbjct: 158 GGILLLISLLSGGEMGGGDVKLMALIGFFIGW 189


>gi|37680847|ref|NP_935456.1| hypothetical protein VV2663 [Vibrio vulnificus YJ016]
 gi|37199596|dbj|BAC95427.1| hypothetical protein [Vibrio vulnificus YJ016]
          Length = 172

 Score = 34.9 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 2/130 (1%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
           FCL+  A+ D     IPN   + +     L     G D+  + L +  G+I F      F
Sbjct: 9   FCLLVVAVYDARDNRIPNAWLLPLTLLACLHWVAKG-DFSQLFLAIGAGVIYFSSGLVLF 67

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
               M  GDVKLL    V  GW  +  +  +++ +  G++++F + +        +  + 
Sbjct: 68  FLRAMSPGDVKLLGVVGVVIGWD-AMGTVAYWITLSAGLVALFFMMLHYAQYPDSLQKLV 126

Query: 137 VPKSFLMKNK 146
              SF   + 
Sbjct: 127 GRYSFQAMSG 136


>gi|220927965|ref|YP_002504874.1| peptidase A24A prepilin type IV [Clostridium cellulolyticum H10]
 gi|219998293|gb|ACL74894.1| peptidase A24A prepilin type IV [Clostridium cellulolyticum H10]
          Length = 167

 Score = 34.9 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 6/116 (5%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGM-DYELIALHLLVGLIVF 69
           ++I    ++F+ +SD+ ++ I N  +   ML   ++   L GM  ++     +++ + +F
Sbjct: 4   YIILFLLVLFSVVSDIRTSKIRNIHTASAMLAGLVINTHLSGMYGFKESMEGIILPVFLF 63

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            I   FF   ++G GD+KL +S    FG     +  + +  ++ G+ S+ +L ++ 
Sbjct: 64  GI---FFYARLIGAGDIKLFSSIGAVFGIDFVIM-VIAYSFLICGLYSLVMLCIKR 115


>gi|188586700|ref|YP_001918245.1| peptidase A24A domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351387|gb|ACB85657.1| peptidase A24A domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 245

 Score = 34.9 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+    LV + ++DL   ++ N++        LLT  ++    E +  HL+ GL  F++ 
Sbjct: 105 LLLGSLLVISVITDLLKGIVLNKMIFFFGILILLTRIVI---IEELFYHLISGLFSFLLL 161

Query: 73  FCFFAFNI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           F     +   MGGGDVKL     +  G   S  S LFF +++G  + +  L    I+   
Sbjct: 162 FAVMVLSGHKMGGGDVKLYGIIGLGVGLLDSLAS-LFFASLIGLAVMLPGLISGRISRKT 220

Query: 131 PIFGMFVPKS 140
            I  +    +
Sbjct: 221 EIPFVPFIWA 230


>gi|238019097|ref|ZP_04599523.1| hypothetical protein VEIDISOL_00959 [Veillonella dispar ATCC 17748]
 gi|237864352|gb|EEP65642.1| hypothetical protein VEIDISOL_00959 [Veillonella dispar ATCC 17748]
          Length = 193

 Score = 34.9 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 2   KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61
           +    +  A++ +    ++  A  D+   ++P+  ++V++   ++ +F+      +  + 
Sbjct: 31  RAISFIHVALYAVFSLIIIAGATIDMHYYILPDEGALVLVLGGIVYSFINDKSMLVTIIS 90

Query: 62  LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
           ++  +          +    G GDVK  ++ A+W   TP  +   F+VA   G L + + 
Sbjct: 91  VM-SVGAITYGLRLMSHKGFGLGDVKWFSAIAMWL--TPWEIVCFFYVAFCVGSLYLLLT 147

Query: 122 TVR 124
           + R
Sbjct: 148 SYR 150


>gi|160877166|ref|YP_001556482.1| prepilin peptidase [Shewanella baltica OS195]
 gi|160862688|gb|ABX51222.1| Prepilin peptidase [Shewanella baltica OS195]
 gi|315269370|gb|ADT96223.1| Prepilin peptidase [Shewanella baltica OS678]
          Length = 304

 Score = 34.9 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 53/153 (34%), Gaps = 21/153 (13%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           I  F LV     DL   ++P+++++ +L    ++    +        +    G +     
Sbjct: 154 ILTFVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHIFASPTDAIIGAAAGYLSLWSI 213

Query: 73  FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           F  F        MG GD KLL     W GW    L                ++ +  +  
Sbjct: 214 FWLFKILTGKEGMGYGDFKLLAVFGAWLGWQMLPL----------------VILLSSLVA 257

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
            +    M V K     N IP+G  I+  G I+ 
Sbjct: 258 AVVGITMIVSKRLKQGNPIPFGPYIAAAGWIAL 290


>gi|170079198|ref|YP_001735836.1| type 4 prepilin peptidase [Synechococcus sp. PCC 7002]
 gi|169886867|gb|ACB00581.1| type 4 prepilin peptidase [Synechococcus sp. PCC 7002]
          Length = 275

 Score = 34.9 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 14/146 (9%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPN-----RVSIVMLGSFLLTAFLLGMDYELIALH 61
           + +       F LV  AL D  +  +PN      + + +L    L     G    +  L 
Sbjct: 107 LEAIAAFTLLFWLVALALIDYDTFTLPNPLTQSGLVLGLLFQMGLGFQANGFPGAIYGLM 166

Query: 62  LLVGLIVF---------IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
             +G  V          +I         MGGGD KLL     W GW    L+ +   A+ 
Sbjct: 167 GGIGAAVLGLWLLDGIGVIGSAVLGQEAMGGGDPKLLAMIGAWLGWQNVLLTVILACALG 226

Query: 113 GGILSVFILTVRMITNHIPIFGMFVP 138
             I+   +   +        FG F+ 
Sbjct: 227 TMIIGGAMGLGKHQRGQHLPFGPFLA 252


>gi|261402230|ref|YP_003246454.1| Peptidase A24B, FlaK domain protein [Methanocaldococcus vulcanius
          M7]
 gi|261369223|gb|ACX71972.1| Peptidase A24B, FlaK domain protein [Methanocaldococcus vulcanius
          M7]
          Length = 237

 Score = 34.9 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVM-LGSFLLTAFLLGMDYE--LIALHLLVGLIV 68
          +LI    L+ A++ DL    I + + I + +  FL   +   + +    I   ++  LI 
Sbjct: 5  YLIGLVGLIIASICDLKDREINDCIWIFITIFGFLYWGYFSFLMHNFIYIGYSVVGFLIC 64

Query: 69 FIICFCFFAFNIMGGGDVKLL 89
          F I +  F F + GGGD KLL
Sbjct: 65 FAIGYIMFLFGV-GGGDGKLL 84


>gi|319786264|ref|YP_004145739.1| prepilin peptidase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464776|gb|ADV26508.1| Prepilin peptidase [Pseudoxanthomonas suwonensis 11-1]
          Length = 287

 Score = 34.9 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
           ++  + LV  +  DL + ++P+++++ ++   L+ +   L M  +   L  + G +    
Sbjct: 133 MLLTWYLVALSGIDLRTRLLPDQLTLPLMWLGLIASLDNLYMPAKPALLGAVAGYVSLWS 192

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   +++G ++    L  +   
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILLSSVVGAVIGSVWLAYKGRD 251

Query: 128 NHIPIF 133
              PI 
Sbjct: 252 RATPIP 257


>gi|88801097|ref|ZP_01116644.1| Prepilin cysteine protease (C20), type IV [Reinekea sp. MED297]
 gi|88776176|gb|EAR07404.1| Prepilin cysteine protease (C20), type IV [Reinekea sp. MED297]
          Length = 291

 Score = 34.9 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65
           + +   ++  + ++   + D  + ++P+ +++ +L + LL              +  + G
Sbjct: 133 LEAFALIVFMWLMISLTMIDFDTHLLPDSMTLPLLWAGLLLNLNDTFVSINDSVIGAVAG 192

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KL  +   WFGW    +  +   +++G ++ + ++
Sbjct: 193 YLTLWSVYWLFKLTTGKEGMGFGDFKLFAAFGAWFGWIALPM-IILLSSLVGAVVGITMI 251

Query: 122 TVRMITNHIPIF 133
                   IPI 
Sbjct: 252 LALGRDRQIPIP 263


>gi|220933965|ref|YP_002512864.1| type IV pilus prepilin peptidase PilD [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995275|gb|ACL71877.1| type IV pilus prepilin peptidase PilD [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 288

 Score = 34.9 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 10/133 (7%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
            S   L+  + L+  A+ DL + ++P+  SI +   ++     LG  +      L+  + 
Sbjct: 134 QSGAALLLTWALIALAVIDLRTTLLPD--SITLPFLWIGLLLNLGGLFTDATSSLIGAVA 191

Query: 68  VFIICFCFFA-------FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
            ++  +  +           MG GD KL      W GW    L  +   +++G ++ + +
Sbjct: 192 GYLSLWLVYHGFKLLTGKEGMGFGDFKLFALIGAWLGWQLLPL-VILLSSLVGAVVGIAL 250

Query: 121 LTVRMITNHIPIF 133
           +  R      P+ 
Sbjct: 251 ILFRGRDRAHPMP 263


>gi|117923339|ref|YP_863956.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Magnetococcus sp. MC-1]
 gi|117607095|gb|ABK42550.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A
           [Magnetococcus sp. MC-1]
          Length = 265

 Score = 34.9 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 26  DLFSAMIPNRV--SIVMLGSFLLTAFLLGMDYELIA---LHLLVGLIVFIICFCFFAFN- 79
           D+   ++PN +   ++++G       +LG  +  +    L ++VG    ++    +    
Sbjct: 120 DMEKRILPNIITYPLLVVGVVCSALPMLGSPFPSMGDALLGMVVGAGGLLVLIEVWYRVT 179

Query: 80  ---IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
               MG GDVKL+   + W GW  +    +F  A+LG ++    L         PI 
Sbjct: 180 GRVAMGLGDVKLVGVLSAWLGW-QALYFIIFGSALLGVVVGGGWLIWGGKEKQTPIP 235


>gi|149909374|ref|ZP_01898029.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Moritella sp. PE36]
 gi|149807484|gb|EDM67433.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Moritella sp. PE36]
          Length = 299

 Score = 34.9 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVG 65
           +  A  LI  + LV     D+   ++P+++++ +L   L        +      +  +VG
Sbjct: 140 IQLAGALILTWTLVALTFIDIDKMLLPDQMTLPLLWLGLFLNVNYAWVTPSDAIIGAIVG 199

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL +   WFGW  S L+ +   +  G I+ +  +
Sbjct: 200 YLSLWSVYWGFKLLTGKEGMGYGDFKLLAAFGAWFGW-QSILAIVLLSSFAGAIIGITQI 258

Query: 122 TVRMITNHIPIF 133
            ++      PI 
Sbjct: 259 ALKKHAKGNPIP 270


>gi|168703132|ref|ZP_02735409.1| hypothetical protein GobsU_26616 [Gemmata obscuriglobus UQM 2246]
          Length = 262

 Score = 34.9 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 42/188 (22%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
            ++    +V AA+ D ++  +PN +++ ++ S  +   L  +   + A    + L V   
Sbjct: 63  LVVICVGMVLAAVIDGWALKVPNWLTMPLVLSGWMLGGLHDLGVPVDAGTGGLALAVLGT 122

Query: 72  CFC------FFAFNIMGGGDVKLLTSTAVWFGW-----------------TPSFLSFLFF 108
            F         A   +G GDVK+      W G                           F
Sbjct: 123 VFGFALLLPMLAIGGVGAGDVKMQMGFGAWVGAFFGTGGTTAVTGTPLHGMSVVFGAFCF 182

Query: 109 VAILGGILSVFILTVRMI-------------------TNHIPIFGMFVPKSFLMKNKIPY 149
            A++GG   + I+ +R                     T  +               K+PY
Sbjct: 183 GAVVGGAFGLIIILIRRQFKQNAGIVREIMSDLHMFGTGQVSAASKRAHDRRSRWTKLPY 242

Query: 150 GIAISMGG 157
           GI + +G 
Sbjct: 243 GIPLCVGF 250


>gi|116623255|ref|YP_825411.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226417|gb|ABJ85126.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 138

 Score = 34.9 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 20/136 (14%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
           DL    +PN ++   +   +  A   G  +  + +     +  F++   F     MGGGD
Sbjct: 18  DLRRRQVPNWLTAAGVAVGVACAAPGG--WRGLGMAAAGAVAGFLLLVPFHWLGAMGGGD 75

Query: 86  VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145
           VKL+       G     L+ +F   ++GG+ +   L +R  T                  
Sbjct: 76  VKLMAVYGALLGPAGILLAAVF-AGVIGGMCAAGTLLLRPRTAA---------------- 118

Query: 146 KIPYGIAISMGGLISY 161
            IPY  AI +G  +S 
Sbjct: 119 -IPYAPAIVLGAWVSL 133


>gi|219667520|ref|YP_002457955.1| phage tail tape measure protein, TP901 family [Desulfitobacterium
           hafniense DCB-2]
 gi|219537780|gb|ACL19519.1| phage tail tape measure protein, TP901 family [Desulfitobacterium
           hafniense DCB-2]
          Length = 1092

 Score = 34.9 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 58  IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117
           + L +  G I+ I          + GG  KL T+     G   +        ++ GG+  
Sbjct: 564 VGLTVAFGGILKIGGGAISTVGSIAGGLGKLSTALG---GAKLATAGIGTAASVAGGVSG 620

Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGI 151
           +  LT  + +  + +    +    +      YGI
Sbjct: 621 LGALTAGLGSAAVAVAPFVLAAGGIAAVG--YGI 652


>gi|146351313|ref|YP_001210540.1| putative type IV leader peptidase [Arthrobacter nitroguajacolicus]
 gi|146218877|emb|CAL09948.1| putative type IV leader peptidase [Arthrobacter nitroguajacolicus]
          Length = 196

 Score = 34.9 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 20  VFAALSDLFSAMIPN---RVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
           +  A++D  +  +PN     S  +LG+ L++  ++  ++  +A   LV      + F   
Sbjct: 60  LVLAVTDFKTHRLPNAFIWPSYGILGALLVSQGVITQEWSDVARAGLVAAATLAVFFLLH 119

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105
            +  +G GDVKL    A+  GW+     +
Sbjct: 120 RYTSLGLGDVKLAGMLAIPLGWSSWTAGY 148


>gi|77461043|ref|YP_350550.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Pseudomonas fluorescens Pf0-1]
 gi|77385046|gb|ABA76559.1| type IV pilus prepilin peptidase PilD [Pseudomonas fluorescens
           Pf0-1]
          Length = 290

 Score = 34.9 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 45  LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100
           ++ +F L +         ++G +     F  F      + +G GD KLL     W GW  
Sbjct: 169 IVNSFELFVPLHDALWGAVLGYMALWSVFWLFKLITGKDGIGHGDFKLLALLGAWGGWQI 228

Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
             L+ +   +++G +L V +L +R      PI 
Sbjct: 229 LPLT-ILLSSLVGAVLGVILLKLRDQKTSTPIP 260


>gi|221133816|ref|ZP_03560121.1| prepilin peptidase [Glaciecola sp. HTCC2999]
          Length = 311

 Score = 34.9 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVG 65
           + + V ++  F L+   + D    ++P+ +++ +L   LL A   + +      +  ++G
Sbjct: 145 IQTLVLIVVSFFLISMIMIDCKHLLLPDDLTLGLLWLGLLVAIWDVFIPLPDAIIGAMLG 204

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            ++    +  F      + MG GD KLL +   + GW    +  +   +I+G +L + I 
Sbjct: 205 YLILWSIYWGFKLVTGKDGMGYGDFKLLAALGAFVGWY-HLIIVILLASIVGLVLGLLIP 263

Query: 122 TVRMITN 128
            +     
Sbjct: 264 QITRKLP 270


>gi|229095891|ref|ZP_04226869.1| Peptidase A24A domain protein [Bacillus cereus Rock3-29]
 gi|229114843|ref|ZP_04244256.1| Peptidase A24A domain protein [Bacillus cereus Rock1-3]
 gi|228668535|gb|EEL23964.1| Peptidase A24A domain protein [Bacillus cereus Rock1-3]
 gi|228687515|gb|EEL41415.1| Peptidase A24A domain protein [Bacillus cereus Rock3-29]
          Length = 249

 Score = 34.9 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 44/115 (38%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IP+R+ I      +L    + +   + ++     ++  + C        +GG
Sbjct: 122 VTDYIYMLIPDRILISFAFLLILECIFVPLVTWIDSIVGSGVILFLLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           GD+KLL+      G    F+              + IL  R+  +    FG F+ 
Sbjct: 182 GDIKLLSLLGFIVGLKGVFIILFLASYCSLCFFGMGILLKRIEASKPIPFGPFIS 236


>gi|76801289|ref|YP_326297.1| preflagellin peptidase [Natronomonas pharaonis DSM 2160]
 gi|76557154|emb|CAI48729.1| probable preflagellin peptidase [Natronomonas pharaonis DSM 2160]
          Length = 356

 Score = 34.9 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 32/148 (21%)

Query: 24  LSDLFSAMIPN--RVSIVMLGSFLLTA---FLLGMDYEL----------IALHLLVGLIV 68
             D+ +  IPN   + ++ +G   L      + G               +   LL    V
Sbjct: 51  YRDIETRRIPNRTWLPLLAVGIIALLWDTVAVTGFVTPTEVPTFERRRFVVQTLLSVGFV 110

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF-----------------LFFVAI 111
             + + F+     GG D K + + AV F   P++  F                 +   A+
Sbjct: 111 APLGYIFWRIGGFGGADAKAIITLAVAFPVYPTYYVFQSAYPLYEAPLGVFSFTILSNAV 170

Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPK 139
           + G+    +L VR +        MF+ +
Sbjct: 171 VVGLAYPLVLAVRNLPRGEITPAMFIGR 198


>gi|254499403|ref|ZP_05112069.1| type IV prepilin peptidase PilD [Legionella drancourtii LLAP12]
 gi|254351382|gb|EET10251.1| type IV prepilin peptidase PilD [Legionella drancourtii LLAP12]
          Length = 286

 Score = 34.9 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 6/111 (5%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
            L+     D+   ++P+ +++ +L    +     L        L      I   +    F
Sbjct: 139 LLICLFFIDVDHQLLPDSITLSLLWLGLIANTENLFAPLPEAVLSAAGAYIGLWLFIKLF 198

Query: 77  AFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
                   MG GD KL  +   WFGW    L  L F +I G I+ +  L +
Sbjct: 199 YLVTGKIGMGNGDFKLFAAFGAWFGWKFLPL-ILLFSSIAGTIIGLLYLYL 248


>gi|170720027|ref|YP_001747715.1| peptidase A24A prepilin type IV [Pseudomonas putida W619]
 gi|169758030|gb|ACA71346.1| peptidase A24A prepilin type IV [Pseudomonas putida W619]
          Length = 146

 Score = 34.9 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL--VGLIVFIICFCFF 76
           L   +  D+    I N +++ +    L+   + G  +             IV ++    +
Sbjct: 12  LALCSGQDVRERQISNLLTLGVAACALVWLAVTGHSWIGARASDAGWALAIVLLLTLPGY 71

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
                G GDVKLL +  +         +F+
Sbjct: 72  VMGRFGAGDVKLLAALGLATSQDYVLGTFI 101


>gi|547850|sp|P36642|LEP4_PSEPU RecName: Full=Type 4 prepilin-like proteins leader
           peptide-processing enzyme; AltName: Full=Protein pilD;
           AltName: Full=Protein secretion protein XCPA; Includes:
           RecName: Full=Leader peptidase; AltName: Full=Prepilin
           peptidase; Includes: RecName: Full=N-methyltransferase
 gi|396265|emb|CAA52334.1| prepilin peptidase [Pseudomonas putida]
          Length = 288

 Score = 34.9 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65
           V + V L   + L+  +L D    ++P+ + +  +    ++  F + +         +VG
Sbjct: 129 VEALVLLPLTWSLLALSLIDHDQQLLPDAIVLPGLWLGLIVNYFGVWVPLPDAVCGAVVG 188

Query: 66  LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +     +  F        MG GD KLL     W GW    L+ L   ++LG ++ V++L
Sbjct: 189 YLSLWTVYWLFKLVTGKEGMGYGDFKLLALLGAWGGWQVLPLTLLL-SSVLGALVGVYLL 247

Query: 122 TVR 124
            VR
Sbjct: 248 RVR 250


>gi|182418647|ref|ZP_02949924.1| bacterial Peptidase A24 N- domain family [Clostridium butyricum
           5521]
 gi|237668589|ref|ZP_04528573.1| bacterial Peptidase A24 N-terminal domain family protein
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377509|gb|EDT75063.1| bacterial Peptidase A24 N- domain family [Clostridium butyricum
           5521]
 gi|237656937|gb|EEP54493.1| bacterial Peptidase A24 N-terminal domain family protein
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 250

 Score = 34.9 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 4/155 (2%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           MK   M+++  F I    L+  ++ D  +  +    ++      ++   +    Y    +
Sbjct: 89  MKYGFMIYTVEFCILISLLIVISMIDYNTQEVYTSTTVFGAIVGVIFILINKFVYGENVM 148

Query: 61  HLLVGLI--VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
           +LL+G +    II    +    MG GD+++     ++ G     L+    + + G +  V
Sbjct: 149 NLLMGGLTGAAIIGAIVYLTKGMGEGDIEIAGVCGLFLGVKQIILALFLAIMLGGAVGVV 208

Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAI 153
            IL           FG F+    L+   I YG A+
Sbjct: 209 VILLNLKNIKDKIAFGPFIAIGTLIA--ILYGNAL 241


>gi|300309697|ref|YP_003773789.1| bifunctional leader peptidase/N-methyltransferase transmembrane
           protein [Herbaspirillum seropedicae SmR1]
 gi|300072482|gb|ADJ61881.1| bifunctional enzyme: leader peptidase/N-methyltransferase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score = 34.9 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 53  MDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108
           +  +   L    G  V  + F  F      + +G GD KL+ +   W GW  +    L  
Sbjct: 177 VPLQDAVLGAAAGYGVLWLIFWLFKLITGKDGLGYGDFKLMAALGAWLGW-QALPVILLL 235

Query: 109 VAILGGILSVFILTVRMITNHIPIF 133
            + +G +L V ++          I 
Sbjct: 236 ASAMGAVLGVVLMAAGRHRRGQAIP 260


>gi|324325422|gb|ADY20682.1| late competence protein comC [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 240

 Score = 34.5 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 4/116 (3%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +   + ++     + + + C        +GG
Sbjct: 113 VTDYIYMLIPNRILAWFACLLILECAFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGLGG 172

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135
           GD+KLL+      G    F+             G  L +  + +R      P   +
Sbjct: 173 GDIKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKRMKMRTQIPFGPFISL 228


>gi|312126636|ref|YP_003991510.1| peptidase a24a prepilin type iv [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776655|gb|ADQ06141.1| peptidase A24A prepilin type IV [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 146

 Score = 34.5 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 6  MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65
          M      L        A+  D+ +  IP+ +  +     +       +       +L++ 
Sbjct: 1  MQSLLALLGATVLAAIASYYDIKTRQIPDWIWALAAVLAVAIWQKNILKNG----NLMIA 56

Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG 97
          +++FI  F    + ++GGGD+KL+++ A+  G
Sbjct: 57 ILIFICLFLLAYYRLLGGGDLKLISALALLVG 88


>gi|126696026|ref|YP_001090912.1| leader peptidase (prepilin peptidase) / N-methyltransferase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543069|gb|ABO17311.1| leader peptidase (prepilin peptidase) / N-methyltransferase
           [Prochlorococcus marinus str. MIT 9301]
          Length = 267

 Score = 34.5 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 28/160 (17%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV-GLIVFIIC 72
           I    L   A+ D     +P  ++     S ++T+  + +  +L   + ++  L+  ++ 
Sbjct: 111 IFSVILFTLAILDFKYFWLPQVLTSGGFVSGIITSLYIDLSNDLYQFNYVIYTLLASLLG 170

Query: 73  FCFFAF-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
           F FF              ++GGGD KL      W G    F+S ++   I  GI  +  L
Sbjct: 171 FTFFNLLSRIGKKIYNKPVIGGGDAKLGAMIGSWLGIQGLFIS-IWLAFISAGIFVIVGL 229

Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
             + I  +                KIP+GI +++ GL+ +
Sbjct: 230 IFKKIKRN---------------QKIPFGIFLALSGLLVW 254


>gi|224370124|ref|YP_002604288.1| PilD [Desulfobacterium autotrophicum HRM2]
 gi|223692841|gb|ACN16124.1| PilD [Desulfobacterium autotrophicum HRM2]
          Length = 258

 Score = 34.5 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 7/141 (4%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGL 66
            +  +      LV  +  D+   +IP+ +S+  +  F   +  +  MD+    L ++ G 
Sbjct: 101 ATLFYFTFAATLVVISFIDIDFQIIPDIISLPGILVFASASVFIPRMDFMDTILGIVAGG 160

Query: 67  IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLF--FVAILGGILSVFI 120
               +    +        MGGGD+KLL       GW     +      +   GG++ + +
Sbjct: 161 GTLYLVALVYYLIRKEEGMGGGDIKLLAMIGGVVGWQGVAFTLFAGSLMGTAGGVIIMVL 220

Query: 121 LTVRMITNHIPIFGMFVPKSF 141
             +  +   IP        S 
Sbjct: 221 TRLGDVKLKIPFGPFLSAGSL 241


>gi|254412692|ref|ZP_05026465.1| Bacterial Peptidase A24 N-terminal domain family [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180427|gb|EDX75418.1| Bacterial Peptidase A24 N-terminal domain family [Microcoleus
           chthonoplastes PCC 7420]
          Length = 276

 Score = 34.5 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 15/106 (14%)

Query: 19  LVFAALSDLFSAMIPNRVS----IVMLGSFLLTAFLLGMDYELIALHLLVGL-------- 66
           L+  +L DL +  +PN ++    +V +      AF        I+  L+ G+        
Sbjct: 114 LLALSLIDLDTMTLPNSLTQSGLVVGIVFQGAFAFFQTAQLSDISAQLMTGISGAVLGIW 173

Query: 67  ---IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
              I+ ++    F    MGGGD KL      W GW    L+     
Sbjct: 174 LFDIITLVGSIVFGQTAMGGGDAKLAAMMGAWLGWKYLLLAGFLAC 219


>gi|94272432|ref|ZP_01292123.1| Prepilin peptidase [delta proteobacterium MLMS-1]
 gi|93450134|gb|EAT01466.1| Prepilin peptidase [delta proteobacterium MLMS-1]
          Length = 270

 Score = 34.5 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
           V+ I    L+     DL   +IP+ +S+  +   F       G+ ++   L +L+G   F
Sbjct: 115 VYFIFSAALLAIFFIDLDHQLIPDVISLPGIALGFTAALLPGGIGWQAAGLGILLGGGSF 174

Query: 70  IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125
            +    +        MGGGD+KLL     + GW    L F+   + L G++      VR 
Sbjct: 175 YLVALGYYLITRREGMGGGDIKLLAMLGAFLGW--QALPFIILASSLLGLVVGVGAMVRQ 232


>gi|255026816|ref|ZP_05298802.1| hypothetical protein LmonocytFSL_11676 [Listeria monocytogenes FSL
           J2-003]
          Length = 193

 Score = 34.5 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 1/97 (1%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            ++ I  + L F  ++D+F   +PN + IV        A L       +     +  + +
Sbjct: 98  LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLATIAILYNQTLMDLIYSGGISCLFY 157

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106
           ++ F  F    +G GD+K+L   + + G+   +  F 
Sbjct: 158 LLFFIIFRKG-IGLGDIKILIILSTFLGFKIGYYIFF 193


>gi|170723699|ref|YP_001751387.1| prepilin peptidase [Pseudomonas putida W619]
 gi|169761702|gb|ACA75018.1| Prepilin peptidase [Pseudomonas putida W619]
          Length = 288

 Score = 34.5 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 21/151 (13%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
             + L+  +L D    ++P+ + +  +    ++  F   +         + G +     +
Sbjct: 137 FTWSLLALSLVDHDKQILPDVLVLPTLWLGLIVNVFDTVVPLSDAIWGAVAGYLSLWTVY 196

Query: 74  CFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
             F        MG GD KLL     W GW    L+ L   +++G ++ + +L +R     
Sbjct: 197 WLFKLITGKEGMGYGDFKLLALIGAWGGWQVVPLT-LMLSSLVGAVVGLCMLRLR----- 250

Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160
                     S  M   IP+G  +++ G I+
Sbjct: 251 ----------SHSMGTAIPFGPYLAIAGWIA 271


>gi|42522434|ref|NP_967814.1| leader peptidase (prepilin peptidase) [Bdellovibrio bacteriovorus
           HD100]
 gi|39574966|emb|CAE78807.1| leader peptidase (prepilin peptidase) [Bdellovibrio bacteriovorus
           HD100]
          Length = 259

 Score = 34.5 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           +LI  F LV     DL   ++P+  ++  +   L+ A L      L AL  ++    F+ 
Sbjct: 103 YLIFIFGLVVCTFIDLDHMILPDEFTLSGIVIGLVGAALNPQREFLDALFGVLMGGGFLW 162

Query: 72  CFC----FFAFN-IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
                   F  N  MGGGD+KLL       GW  +    +   AI+G ++ + 
Sbjct: 163 GMAYVYYMFTKNEGMGGGDIKLLAWIGAIVGW-KAIPFVIMTSAIVGSVIGLI 214


>gi|184156663|ref|YP_001845002.1| Type II secretory pathway, prepilin signal peptidase PulO
           [Acinetobacter baumannii ACICU]
 gi|332873071|ref|ZP_08441028.1| type 4 prepilin-like protein leader peptide-processing enzyme
           [Acinetobacter baumannii 6014059]
 gi|183208257|gb|ACC55655.1| Type II secretory pathway, prepilin signal peptidase PulO
           [Acinetobacter baumannii ACICU]
 gi|322506550|gb|ADX02004.1| pilD [Acinetobacter baumannii 1656-2]
 gi|323516429|gb|ADX90810.1| Type II secretory pathway, prepilin signal peptidase PulO
           [Acinetobacter baumannii TCDC-AB0715]
 gi|332738583|gb|EGJ69453.1| type 4 prepilin-like protein leader peptide-processing enzyme
           [Acinetobacter baumannii 6014059]
          Length = 286

 Score = 34.5 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71
           LI  + L+     D  + ++P+R ++ +      +  F +           L+G +   I
Sbjct: 138 LILTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110
            +  F        MG GD KLL +   W G  P  L  +  ++
Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMG--PLMLPLIVLLS 238


>gi|283788029|ref|YP_003367894.1| T2SS leader peptidase GspO [Citrobacter rodentium ICC168]
 gi|282951483|emb|CBG91182.1| putative T2SS leader peptidase GspO [Citrobacter rodentium ICC168]
          Length = 257

 Score = 34.5 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 10/139 (7%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV- 68
           A+FL   F L    + DL   ++P+++++ +L   LL     G+     A+         
Sbjct: 113 ALFLYFWFALAL-CIIDLRHLLLPDKLTLPLLWCGLLFNSYTGLISCEEAITGAAAGYAS 171

Query: 69  --FIICFC--FFAFNIMGGGDVKLLTSTAVWFGWT--PSFLSFLFFVAILGGILSVFILT 122
              +  F    +    +G GD+KL  +   W GW   P  +     ++I  G+  + IL 
Sbjct: 172 LWLLNAFVRLLWRKEGIGYGDLKLFAAVGAWTGWQSLPPVIYIAAMMSIFYGL--LMILR 229

Query: 123 VRMITNHIPIFGMFVPKSF 141
            R   + IP         +
Sbjct: 230 TRRRISVIPFGPGLAVSGW 248


>gi|297545408|ref|YP_003677710.1| stage II sporulation protein E, protein serine/threonine
           phosphatase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843183|gb|ADH61699.1| stage II sporulation protein E, protein serine/threonine
           phosphatase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 783

 Score = 34.5 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 16/171 (9%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
            +A+ ++  F    + + ++   +I N   I +  S  L  F+LG+++  +    L G++
Sbjct: 149 ITAMLMVFIFNHAVSFILNVNRKIISNEELISL--SIFLGLFILGLNHLNVWKFTLNGIL 206

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI----LGGILSVFILTV 123
             +I F       +G G      S     G   S   F   V+I      G+L+  +  +
Sbjct: 207 GTLIIFLASYIGGVGVG-----ASIGTTIGLIGSLSFFQMPVSIGLFGFAGLLAGSLKKL 261

Query: 124 RMITNHIPIFGMFVPKSFLMKNKI-----PYGIAISMGGLISYPDSYLFKV 169
             I   I         +F + + I     PY I ++     + P  Y+ KV
Sbjct: 262 HRIGVIIGFLTAIFIITFYVTSSIDMLINPYDIVLASLMFAALPKKYIVKV 312


>gi|170724673|ref|YP_001758699.1| prepilin peptidase [Shewanella woodyi ATCC 51908]
 gi|169810020|gb|ACA84604.1| Prepilin peptidase [Shewanella woodyi ATCC 51908]
          Length = 303

 Score = 34.5 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 6/134 (4%)

Query: 5   KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLL 63
             +  A+     F L+     DL   ++P+++++ +L    ++      +      +   
Sbjct: 144 PTIEFALATTLTFGLIVLTGIDLDEMLLPDQITLPLLWLGLIINLNGTFVSPTDAIIGAA 203

Query: 64  VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
            G +     F  F        MG GD KLL     W GW    +  +   +++G I+ + 
Sbjct: 204 AGYMSLWSVFWGFKLLTGKEGMGYGDFKLLAVFGAWLGWQLLPI-IVLLSSLVGAIIGIG 262

Query: 120 ILTVRMITNHIPIF 133
           ++  + I +  PI 
Sbjct: 263 LIVTKKINHTNPIP 276


>gi|332970969|gb|EGK09943.1| leader peptide processing enzyme [Desmospora sp. 8437]
          Length = 152

 Score = 34.5 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 22  AALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80
           A ++DL   +I +R  ++ +  +  +  +     +    L  L       +       + 
Sbjct: 21  ATVTDLRERLIYDRFVLIGLAFALGIHLYSRHYSWTEYILTSLGAFFALALIAILTKGSA 80

Query: 81  MGGGDVKLLTSTAVWFGWTPSFLSFLF 107
           +GGGD+KL        G     L F+ 
Sbjct: 81  IGGGDIKLFAMIGFATGLEDFILIFMV 107


>gi|322834636|ref|YP_004214663.1| Prepilin peptidase [Rahnella sp. Y9602]
 gi|321169837|gb|ADW75536.1| Prepilin peptidase [Rahnella sp. Y9602]
          Length = 276

 Score = 34.5 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 20/155 (12%)

Query: 17  FCLVFA-ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
           FCL+++  + D    ++P+ +  ++L S LL + L G+        +   +I++++ +  
Sbjct: 127 FCLLYSLTVIDFNHLILPDSLVSLLLWSGLLCSVL-GITDIGPRSAICGAVIIWLVLYAV 185

Query: 76  FAF-------NIMGGGDVKLLTSTAVWFGWT--PSFLSFLFFVAILGGILSVFILTVRMI 126
            A          +G GDVKL+ +  VW G    P  + +     I+  +L   +   R +
Sbjct: 186 MAAYEKWRGREGLGYGDVKLMAAITVWVGMEKIPELIMWSAASGIMVYVLCTVLNQRRTL 245

Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
             + P            K+ IP+G +ISM GL+ +
Sbjct: 246 DENHPAAE---------KHYIPFGPSISMAGLVIF 271


>gi|332978026|gb|EGK14767.1| leader peptidase (prepilin peptidase)/N-methyltransferase
           [Desmospora sp. 8437]
          Length = 228

 Score = 34.5 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 30  AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLL 89
            +IPNR++ +    FLL   L G +        L G  +  +     +   +GGGD+K+ 
Sbjct: 99  RLIPNRLNGMAALGFLLVRLLSGQEVLSPLGAGLFGGGIL-LAISLLSRGGVGGGDMKMA 157

Query: 90  TSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
            +  +  GW P   + +    + GG+ + F+L    +    P+ 
Sbjct: 158 AAAGLALGW-PKVATGVGLAVLSGGLWASFLLMTGKVDRKTPLP 200


>gi|167039389|ref|YP_001662374.1| peptidase A24A, prepilin type IV [Thermoanaerobacter sp. X514]
 gi|300914031|ref|ZP_07131348.1| peptidase A24A prepilin type IV [Thermoanaerobacter sp. X561]
 gi|307725284|ref|YP_003905035.1| peptidase A24A prepilin type IV [Thermoanaerobacter sp. X513]
 gi|166853629|gb|ABY92038.1| peptidase A24A, prepilin type IV [Thermoanaerobacter sp. X514]
 gi|300890716|gb|EFK85861.1| peptidase A24A prepilin type IV [Thermoanaerobacter sp. X561]
 gi|307582345|gb|ADN55744.1| peptidase A24A prepilin type IV [Thermoanaerobacter sp. X513]
          Length = 128

 Score = 34.5 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 4/122 (3%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    L FAA+ D+    +       +L    +   L    Y  +   LL  L++FI+ 
Sbjct: 3   ILILLILFFAAVEDIKKMEVGYIYPASILILSFINVLLN--PYINLNFMLLNSLLIFIVL 60

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
           F F+    +GGGDVK+LT+ + + G+       L F +++  + S+ +   +     +P 
Sbjct: 61  FLFWLLGGIGGGDVKILTALSFYAGFR--IWDILLFSSMIFLLYSLILCRFKAKLPFMPA 118

Query: 133 FG 134
             
Sbjct: 119 VA 120


>gi|254525344|ref|ZP_05137399.1| type II secretory pathway prepilin signal peptidase
           [Stenotrophomonas sp. SKA14]
 gi|219722935|gb|EED41460.1| type II secretory pathway prepilin signal peptidase
           [Stenotrophomonas sp. SKA14]
          Length = 287

 Score = 34.5 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    L+  +  DL + ++P+++++ ++   L+ + +  +        +   L    + 
Sbjct: 133 IVLTCFLIALSGIDLRTQLLPDQLTLPLMWLGLIGS-IDNLYMPAKPALIGAALGYLSLW 191

Query: 73  FCFFAFN------IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
             ++ F        MG GD KLL +   W G     L  +   ++LG I+    L  R  
Sbjct: 192 AVWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILLSSVLGAIIGSIWLYSRGR 250

Query: 127 TNHIPIF 133
               PI 
Sbjct: 251 DRATPIP 257


>gi|238790278|ref|ZP_04634052.1| Flp pilus assembly protein, protease CpaA [Yersinia frederiksenii
           ATCC 33641]
 gi|238721628|gb|EEQ13294.1| Flp pilus assembly protein, protease CpaA [Yersinia frederiksenii
           ATCC 33641]
          Length = 79

 Score = 34.5 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 14/87 (16%)

Query: 75  FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
               NI+G GD+KLL   A+ F      L +L  ++ILG  L++                
Sbjct: 1   MVTINIVGAGDIKLLAVLALTFP-DGIILGYLLVMSILGCGLAIIEFIRLRFEKR----- 54

Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISY 161
                       +PYG+AI+   L   
Sbjct: 55  --------QSRGLPYGVAIAGSYLFVL 73


>gi|119505107|ref|ZP_01627183.1| Peptidase A24A, prepilin type IV:Peptidase A24A, N-terminal [marine
           gamma proteobacterium HTCC2080]
 gi|119459089|gb|EAW40188.1| Peptidase A24A, prepilin type IV:Peptidase A24A, N-terminal [marine
           gamma proteobacterium HTCC2080]
          Length = 288

 Score = 34.5 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 20/125 (16%)

Query: 54  DYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
                 +    G +     +  F      + MG GD KLL +   WFGW    L  +   
Sbjct: 177 SLNDAVIGAAAGYLTLWSVYWIFKLTTGKDGMGFGDFKLLAALGAWFGWQAIPL-IIILS 235

Query: 110 AILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169
           + +G  + + ++ ++     +P               +P+G  ++  GL++         
Sbjct: 236 SFVGAFIGILLILLKKQGREVP---------------MPFGPYLAGAGLLTLFYGDQLTA 280

Query: 170 ALMGL 174
               L
Sbjct: 281 TYFSL 285


>gi|146294510|ref|YP_001184934.1| prepilin peptidase [Shewanella putrefaciens CN-32]
 gi|145566200|gb|ABP77135.1| Prepilin peptidase [Shewanella putrefaciens CN-32]
          Length = 308

 Score = 34.5 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 23/154 (14%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +  F L+     DL   ++P+++++ +L   LL            A+ +        +  
Sbjct: 158 LLTFVLIALTGIDLDEMLLPDQLTLPLLWLGLLLNLHHTFASPTDAI-IGAAAGYLSLWS 216

Query: 74  CFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            F+ F +      MG GD KLL     W GW    L  +   +++G ++ +         
Sbjct: 217 IFWVFKLLTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGAVVGI--------- 266

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                 GM + K   M N IP+G  I+  G I+ 
Sbjct: 267 ------GMIISKRNQMDNPIPFGPYIAAAGWIAL 294


>gi|319427875|gb|ADV55949.1| type IV prepilin peptidase, PilD [Shewanella putrefaciens 200]
          Length = 308

 Score = 34.5 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 23/154 (14%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +  F L+     DL   ++P+++++ +L   LL            A+ +        +  
Sbjct: 158 LLTFVLIALTGIDLDEMLLPDQLTLPLLWLGLLLNLHHTFASPTDAI-IGAAAGYLSLWS 216

Query: 74  CFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            F+ F +      MG GD KLL     W GW    L  +   +++G ++ +         
Sbjct: 217 IFWVFKLLTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGAVVGI--------- 266

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                 GM + K   M N IP+G  I+  G I+ 
Sbjct: 267 ------GMIISKRNQMDNPIPFGPYIAAAGWIAL 294


>gi|289667055|ref|ZP_06488130.1| type II secretory pathway prepilin signal peptidase [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 287

 Score = 34.5 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 21/154 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
           ++    LV  +  DL   ++P+++++ ++   L+ +   L M  +   L   VG +    
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192

Query: 72  CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   +++G IL           
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILISSLVGAILG---------- 241

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                    V K       IP+G  +++ G + +
Sbjct: 242 -----SAWLVAKGRDRATPIPFGPYLAIAGWVVF 270


>gi|320531949|ref|ZP_08032852.1| hypothetical protein HMPREF9057_00720 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135842|gb|EFW27887.1| hypothetical protein HMPREF9057_00720 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 225

 Score = 34.5 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 15/141 (10%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRV-------SIVMLGSFLLTAFLLGMDYELIAL 60
              V L     L  A   D     +PNR+       +     + +L   + G        
Sbjct: 67  EVIVALPLVALLGAACSVDAVCHRLPNRILGPAALWTGAATTTLVLLNVVTGTPLSEAGW 126

Query: 61  HL------LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF--LFFVAIL 112
            L       V   V +        + MG GD KL     +W G+     +   +     +
Sbjct: 127 ALLRSVLCAVSAGVIVGAMALLPGSGMGLGDAKLCAVLGLWLGYFGGTYTAMGIILGFFI 186

Query: 113 GGILSVFILTVRMITNHIPIF 133
           GG++++ ++  R+ +    I 
Sbjct: 187 GGLVAIALMISRLASRKTLIA 207


>gi|220931445|ref|YP_002508353.1| Prepilin peptidase [Halothermothrix orenii H 168]
 gi|219992755|gb|ACL69358.1| Prepilin peptidase [Halothermothrix orenii H 168]
          Length = 246

 Score = 34.5 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 18/136 (13%)

Query: 26  DLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           D+   +IPN ++   M+   + +  L  + +    L +L+  I   I    F    +G G
Sbjct: 113 DIREKIIPNVITFPGMVTGLISSIILKHIGFWNSLLGILIPGIFLFIIALIFK-GGLGMG 171

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVKL+     + G   + ++   F     G ++  IL               V      K
Sbjct: 172 DVKLVAMIGAFTGVRWALMA--LFTGAFLGAITGIILI--------------VSGVLDRK 215

Query: 145 NKIPYGIAISMGGLIS 160
             +P+G  IS+GGL+S
Sbjct: 216 KPVPFGPFISIGGLVS 231


>gi|75759993|ref|ZP_00740060.1| ComC protein [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228899985|ref|ZP_04064222.1| Peptidase A24A domain protein [Bacillus thuringiensis IBL 4222]
 gi|228964364|ref|ZP_04125479.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|74492512|gb|EAO55661.1| ComC protein [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228795304|gb|EEM42795.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228859651|gb|EEN04074.1| Peptidase A24A domain protein [Bacillus thuringiensis IBL 4222]
          Length = 249

 Score = 34.5 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 16/134 (11%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +D    +IP+ + I      +L +  + +     ++     + + + C        +GGG
Sbjct: 123 TDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGGG 182

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           D+KLL+      G    F+              + I+  R                  ++
Sbjct: 183 DIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGIGIVLKR----------------IEVR 226

Query: 145 NKIPYGIAISMGGL 158
             IP+G  IS+G +
Sbjct: 227 KPIPFGPFISLGAI 240


>gi|240136823|ref|YP_002961290.1| putative prepilin peptidase (fragment) [Methylobacterium extorquens
           AM1]
 gi|240006787|gb|ACS38013.1| putative prepilin peptidase (fragment) [Methylobacterium extorquens
           AM1]
          Length = 158

 Score = 34.5 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF------- 78
           DL   +IP++V++ +L      + L G+    I   L+     F++ +   A        
Sbjct: 25  DLRRRIIPDQVNLALLILGAGASALRGLALPQILASLVAAAGAFLLAWSLRAAYARLRGR 84

Query: 79  NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
             +G GDVK + + A W G     L  L           + +L  R +
Sbjct: 85  TGLGLGDVKFMGAAAAWTGLAGLPLMILVASLSALAAFGLAVLAGRRL 132


>gi|222151542|ref|YP_002560698.1| hypothetical protein MCCL_1295 [Macrococcus caseolyticus JCSC5402]
 gi|222120667|dbj|BAH18002.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 245

 Score = 34.5 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 19  LVFAALSDLFSAMIPNRV------SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+  ++ D+ +  IPN++       +++  ++L       +        ++  LI+ ++ 
Sbjct: 100 LIPLSIIDIETYTIPNQLLTLFFSCLMIGYTYLFIFHSETISEIKFEHIMIKLLIILLLH 159

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
             FF    +G GD+KL     + F   P +++  F   ++GG  S+  L+ +     IP+
Sbjct: 160 IFFFVTKSIGYGDIKLF-VILLIFLPIPYYIAMFFMTYLIGGFASMVFLSYKRNLKKIPL 218

Query: 133 FG 134
             
Sbjct: 219 VP 220


>gi|228907036|ref|ZP_04070900.1| Peptidase A24A domain protein [Bacillus thuringiensis IBL 200]
 gi|228852540|gb|EEM97330.1| Peptidase A24A domain protein [Bacillus thuringiensis IBL 200]
          Length = 249

 Score = 34.5 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 16/134 (11%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +D    +IP+ + I      +L +  + +     ++     + + + C        +GGG
Sbjct: 123 TDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGGG 182

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           D+KLL+      G    F+              + I+  R                  ++
Sbjct: 183 DIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGIGIVLKR----------------IEVR 226

Query: 145 NKIPYGIAISMGGL 158
             IP+G  IS+G +
Sbjct: 227 KPIPFGPFISLGAI 240


>gi|88859014|ref|ZP_01133655.1| Type 4 prepilin-like proteins leader peptide processing enzyme
           [Pseudoalteromonas tunicata D2]
 gi|88819240|gb|EAR29054.1| Type 4 prepilin-like proteins leader peptide processing enzyme
           [Pseudoalteromonas tunicata D2]
          Length = 305

 Score = 34.5 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 56/132 (42%), Gaps = 8/132 (6%)

Query: 8   FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
            + ++L   + L+     D+   ++P+++++ +L    L A + G+  E     +   L 
Sbjct: 147 QTVLYLGVTWALIALIFIDIDHMLLPDQITLPLLWL-GLLASIFGLTIEPAQAIIGAALG 205

Query: 68  VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
                  ++ F +      MG GD KL+       GW  +    +   +++G ++ + +L
Sbjct: 206 YLSFWSVYWLFKLATGKEGMGYGDFKLMAVFGALLGW-QALPMIILLSSLVGAVIGITLL 264

Query: 122 TVRMITNHIPIF 133
           +++      PI 
Sbjct: 265 SIQGKDKATPIP 276


>gi|254253321|ref|ZP_04946639.1| Type II secretory pathway prepilin signal peptidase PulO
           [Burkholderia dolosa AUO158]
 gi|124895930|gb|EAY69810.1| Type II secretory pathway prepilin signal peptidase PulO
           [Burkholderia dolosa AUO158]
          Length = 303

 Score = 34.5 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 10  AVFLIPPFCLVFAALS--DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67
           A       C    A+S  D+ ++ +P+ +++ +L +  L A L G    L +  +     
Sbjct: 149 AALAAFGLCAALLAMSAIDIRTSYLPDSMTLPLLWA-GLAANLGGTFTSLRSAVIGAMAG 207

Query: 68  VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
              +   ++ F        +G GD+KLL +   W GW  +    + F A+ G I+ +  +
Sbjct: 208 YLFLWAIYWLFKWLRGIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAIVGLVAM 266

Query: 122 TVRMITNHIPIF 133
               +    PI 
Sbjct: 267 WRGRMRFEEPIP 278


>gi|281417571|ref|ZP_06248591.1| peptidase A24A domain protein [Clostridium thermocellum JW20]
 gi|281408973|gb|EFB39231.1| peptidase A24A domain protein [Clostridium thermocellum JW20]
          Length = 281

 Score = 34.5 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGS---------FLLTAFLLGMDYELIALHLLVG---- 65
           L+     DL   +IPN++ +V L           F      +   +    L   +G    
Sbjct: 124 LIAVFFIDLDHMIIPNKLVVVALVGGVLPFVYNIFRPMDIYVDRKWWNPLLGAFIGFGFL 183

Query: 66  LIVFIICFCFFAFN-IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           L+V I+ +  +  +  MGGGDVKL     ++ GW  + ++        G +  V +L  +
Sbjct: 184 LLVAIVGYLVYKTDEAMGGGDVKLFAPIGLFLGWKMTIVALFISFVSAGIVSIVLLLLKK 243

Query: 125 MITNHIPIFGMFV 137
                  +FG F+
Sbjct: 244 KERRSTFVFGPFI 256


>gi|114564937|ref|YP_752451.1| prepilin peptidase [Shewanella frigidimarina NCIMB 400]
 gi|114336230|gb|ABI73612.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Shewanella frigidimarina NCIMB 400]
          Length = 308

 Score = 34.5 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           I  F LV     DL   ++P+++++ ++    ++    +    E   +    G +     
Sbjct: 158 ILTFVLVALTGIDLDEMLLPDQLTLPILWLGLIINLKGIYTSPEDAIIGAAAGYLSLWSV 217

Query: 73  FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           F  F        MG GD KLL     W GW    L  L    + G ++ + ++       
Sbjct: 218 FWLFKLVTGKEGMGYGDFKLLAVFGAWLGWQMLPLIILLSSLV-GAVVGITMI------- 269

Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                   + K     N IP+G  I+  G I+ 
Sbjct: 270 --------MAKQLNKGNPIPFGPYIAAAGWIAL 294


>gi|228938520|ref|ZP_04101128.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971399|ref|ZP_04132025.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978012|ref|ZP_04138391.1| Peptidase A24A domain protein [Bacillus thuringiensis Bt407]
 gi|228781673|gb|EEM29872.1| Peptidase A24A domain protein [Bacillus thuringiensis Bt407]
 gi|228788266|gb|EEM36219.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821118|gb|EEM67135.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 249

 Score = 34.1 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IP+ + I      +L +  + +     ++     + + + C        +GG
Sbjct: 122 VTDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KLL+      G    F+              V I+  R                  +
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGVGIVLKR----------------IEV 225

Query: 144 KNKIPYGIAISMGGL 158
           +  IP+G  IS+G +
Sbjct: 226 RKPIPFGPFISLGAI 240


>gi|91785277|ref|YP_560483.1| Type 4 prepilin-like peptidase, leader peptide processing enzyme
           [Burkholderia xenovorans LB400]
 gi|91689231|gb|ABE32431.1| Type 4 prepilin-like peptidase, leader peptide processing enzyme
           [Burkholderia xenovorans LB400]
          Length = 318

 Score = 34.1 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 4   SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHL 62
             +   A F +    L  +A+ D+ + ++P+ +++ +L    ++    +  +     L  
Sbjct: 161 PTLTALAAFGLCAALLAMSAI-DIDTHLLPDSLTLPLLWAGIIVNFNGMFANLHDAVLGA 219

Query: 63  LVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
           + G +V  +    F        MG GD KLL +   W GW  +    +   A+ G ++ +
Sbjct: 220 IFGYLVLWVVHWLFRLVRGVEGMGYGDFKLLAALGAWLGWA-ALPQIVLIAAVAGAVIGL 278

Query: 119 FILTVRMITNHIPIF 133
                  +    P+ 
Sbjct: 279 LATWRGRMRFEEPLP 293


>gi|227495464|ref|ZP_03925780.1| prepilin peptidase [Actinomyces coleocanis DSM 15436]
 gi|226831011|gb|EEH63394.1| prepilin peptidase [Actinomyces coleocanis DSM 15436]
          Length = 226

 Score = 34.1 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 9/124 (7%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------DYELIALHLLVGLI-VFII 71
           L  +A  DL    +PNR++ + L  FLL   L  +          IA  +   L+     
Sbjct: 86  LALSAYVDLAVHKLPNRLTFLALVIFLLGLGLRLIILPFENPLPFIASAVFGALVWGLPP 145

Query: 72  CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF--LFFVAILGGILSVFILTVRMITNH 129
              ++    +G GDVKL      W G      ++  L    ++GG ++++++TV+     
Sbjct: 146 ALIYYLMKGIGFGDVKLAPVLGAWLGLYGFETAYVGLTVAFLIGGAVALYLVTVKKQAMK 205

Query: 130 IPIF 133
             I 
Sbjct: 206 TRIA 209


>gi|163857695|ref|YP_001631993.1| putative Flp pilus assembly protease [Bordetella petrii DSM 12804]
 gi|163261423|emb|CAP43725.1| putative Flp pilus assembly protease [Bordetella petrii]
          Length = 142

 Score = 34.1 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 7/120 (5%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-------DYELIALHLLVGLIVFIICFCFF 76
            +D     +PN + +       L A    +                L+G  + ++    +
Sbjct: 3   AADWRHRRVPNVLVVAGASFQGLWAGAAALKVGWHYPPMWTSWGMALLGFAMALLFVPLW 62

Query: 77  AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136
               MG  D+K++ +  +  G        +    + GG   +++   R  T    +  + 
Sbjct: 63  MRRSMGAADIKVIAAYGLMLGPRGLLAVLMLGSLLAGGHALLYLGASRRWTLPHSLGRVP 122


>gi|168335415|ref|ZP_02693506.1| hypothetical protein Epulo_10182 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 137

 Score = 34.1 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 6/103 (5%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    L+  ++SD  + +IP + +  ++   ++      M+   I  H++  LI+  I 
Sbjct: 4   VLMCVYLICISISDAATKIIPPKFTAAIMCLGIIN---TAMNANNIVEHIVGMLIIPSIL 60

Query: 73  FCFFAF---NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
           F    F     MGGGD+KL+T   ++ G +   ++F     I 
Sbjct: 61  FLIIVFTKEQAMGGGDLKLMTGAGLYLGSSKIMIAFSTACYIA 103


>gi|156741688|ref|YP_001431817.1| peptidase A24A prepilin type IV [Roseiflexus castenholzii DSM
           13941]
 gi|156233016|gb|ABU57799.1| peptidase A24A prepilin type IV [Roseiflexus castenholzii DSM
           13941]
          Length = 149

 Score = 34.1 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 11  VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70
           + L     LV+ +++D+    IPNRV    L + LL A      + L+   L+ G++  +
Sbjct: 8   LMLAAAAVLVYVSITDIRERCIPNRVMFPALLTALLVALARPERWSLLLGGLVAGVL-LV 66

Query: 71  ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129
           +    +     GGGDVKL     +  GW P+ L  L    +   + +   + +R ++  
Sbjct: 67  LPTLIYGLEKAGGGDVKLGLFIGLVLGW-PAILPALGLAFVSATLFAAGGMLLRRLSWR 124


>gi|317054337|ref|YP_004118362.1| Prepilin peptidase [Pantoea sp. At-9b]
 gi|316952332|gb|ADU71806.1| Prepilin peptidase [Pantoea sp. At-9b]
          Length = 251

 Score = 34.1 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 9/137 (6%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L     L+  +L D+   ++P+ V++ +L   LL      +   L    L V +    + 
Sbjct: 108 LFFCGSLLVLSLIDIRHYLLPDAVTLPLLWCGLLLHCCAILPGSLSDAVLGVAVGYVSLA 167

Query: 73  FCFFAFNIM------GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126
               A++ +      G GD KLL + A W GW    L  +  +A  GGIL   +++  + 
Sbjct: 168 VLAHAYHWLRQQQGLGMGDAKLLAAIAAWTGW--QALPNVLIIASSGGIL-FALISRNLW 224

Query: 127 TNHIPIFGMFVPKSFLM 143
              +     F P   L 
Sbjct: 225 PQRVRQTIAFGPWLALA 241


>gi|119946931|ref|YP_944611.1| prepilin peptidase [Psychromonas ingrahamii 37]
 gi|119865535|gb|ABM05012.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Psychromonas ingrahamii 37]
          Length = 290

 Score = 34.1 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 6/126 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIP-NRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + L+     D  + ++P N    ++    L+       D     L  + G +    
Sbjct: 138 LVFTWVLISLTFIDFDTMLLPDNLTLPLLWLGLLINISGTFTDISSAVLGAIFGYLTLWS 197

Query: 72  CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   WFGW    L  +   +  G I+ + I+      
Sbjct: 198 IYWGFKIVTGKEGMGYGDFKLLAALGAWFGWQALPL-IILLSSFSGAIIGIAIMLASKDK 256

Query: 128 NHIPIF 133
              P+ 
Sbjct: 257 QSRPMP 262


>gi|163751666|ref|ZP_02158886.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Shewanella benthica KT99]
 gi|161328492|gb|EDP99647.1| type 4 prepilin-like proteins leader peptide processing enzyme
           [Shewanella benthica KT99]
          Length = 303

 Score = 34.1 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 8/126 (6%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73
           +  F L+     DL   ++P+++++ +L  F L   L G         +        +  
Sbjct: 153 LLTFVLMALTGIDLDEMLLPDQLTLPLLW-FGLLINLNGTFTSGSDALIGAAAGYLSLWS 211

Query: 74  CFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            F+AF +      MG GD KLL     WFGW    L  L    + G ++ + ++  + + 
Sbjct: 212 VFWAFKLLTGKDGMGYGDFKLLAVFGAWFGWQLLPLIILLSSIV-GAVVGIMLIISKKLN 270

Query: 128 NHIPIF 133
           +  PI 
Sbjct: 271 HGNPIP 276


>gi|186477405|ref|YP_001858875.1| prepilin peptidase [Burkholderia phymatum STM815]
 gi|184193864|gb|ACC71829.1| Prepilin peptidase [Burkholderia phymatum STM815]
          Length = 309

 Score = 34.1 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 17  FCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75
             L+  +  D+ + ++P+ +++ +L    ++    +        +  + G +        
Sbjct: 164 ATLLAMSAIDIDTHLLPDSMTLPLLWAGLIVNFNAVFATLHDAVVGAIAGYLALWCVHWL 223

Query: 76  FAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131
           F        MG GD KLL++   W GWT +    +   A+ G ++ +F   +  +    P
Sbjct: 224 FKIVRGVEGMGYGDFKLLSALGAWLGWT-ALPQIILIAAVTGAVVGLFATWIGRMRFEEP 282

Query: 132 IF 133
           + 
Sbjct: 283 LP 284


>gi|121610839|ref|YP_998646.1| prepilin peptidase [Verminephrobacter eiseniae EF01-2]
 gi|121555479|gb|ABM59628.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Verminephrobacter eiseniae EF01-2]
          Length = 294

 Score = 34.1 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 7/112 (6%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74
                +  A  D  + ++P+ +++ +L + LL+A L  +D  L    L        +   
Sbjct: 141 FSAASMALACIDWDTTLLPDDITLPLLWAGLLSAALQWIDLPLYDSVLGAVAGYLSLWLV 200

Query: 75  FFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           ++ F +      MG GD KL  +   WFGW  + +  +   +++G  + + +
Sbjct: 201 YWGFKLATGKEGMGYGDFKLFAALGAWFGW-QALVPIILLSSVIGAGVGIAM 251


>gi|238922466|ref|YP_002935979.1| hypothetical protein EUBREC_0040 [Eubacterium rectale ATCC 33656]
 gi|238874138|gb|ACR73845.1| Hypothetical protein EUBREC_0040 [Eubacterium rectale ATCC 33656]
          Length = 162

 Score = 34.1 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
            L  AA+ D  +  I NR+ +  LG   L   + G     I   L   +   +I +  +
Sbjct: 4  ILLTVAAIGDFKNYRISNRLILTGLGCAFLFRLVGG-KVASIIWFLPDIVFPVVILYFLY 62

Query: 77 AFNIMGGGDVKLLTSTA 93
             I+G GD+KL +   
Sbjct: 63 LSGILGAGDIKLFSVVC 79


>gi|52144030|ref|YP_082798.1| late competence protein (includes: leader peptidase;
           N-methyltransferase) [Bacillus cereus E33L]
 gi|51977499|gb|AAU19049.1| late competence protein (includes: leader peptidase;
           N-methyltransferase) [Bacillus cereus E33L]
          Length = 240

 Score = 34.1 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IPNR+        +L    + +     ++     + + + C        +GG
Sbjct: 113 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 172

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KL +      G    F+              V ++  RM                 M
Sbjct: 173 GDIKLFSLLGFIVGLKGIFMILFLSSFFSLCFFGVGLVLKRM----------------KM 216

Query: 144 KNKIPYGIAISMGGL 158
           + +IP+G  IS+G +
Sbjct: 217 RTQIPFGPFISLGAI 231


>gi|218896337|ref|YP_002444748.1| late competence protein comC [Bacillus cereus G9842]
 gi|218545239|gb|ACK97633.1| late competence protein comC [Bacillus cereus G9842]
          Length = 240

 Score = 34.1 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 16/134 (11%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           +D    +IP+ + I      +L +  + +     ++     + + + C        +GGG
Sbjct: 114 TDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGGG 173

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           D+KLL+      G    F+              + I+  R                  ++
Sbjct: 174 DIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGIGIVLKR----------------IEVR 217

Query: 145 NKIPYGIAISMGGL 158
             IP+G  IS+G +
Sbjct: 218 KPIPFGPFISLGAI 231


>gi|159905108|ref|YP_001548770.1| peptidase A24A domain-containing protein [Methanococcus
          maripaludis C6]
 gi|159886601|gb|ABX01538.1| Peptidase A24A domain protein [Methanococcus maripaludis C6]
          Length = 346

 Score = 34.1 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
            ++ A  +D+   +IP+ V I+ML   L   +     ++ +       ++  I+     
Sbjct: 17 LLILTATYTDIKERIIPHFVIILMLIVNLPVGYYF-FGFDAVVSFFATLILCLILGVG-- 73

Query: 77 AFNIMGGGDVKLLTSTA 93
              MGGGDVK+ T+ +
Sbjct: 74 ----MGGGDVKMFTALS 86


>gi|87299153|emb|CAJ76214.1| competence transcription factor C [Bacillus sp. Bt 35]
          Length = 186

 Score = 34.1 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 35/101 (34%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IP+ + I       L +  + +     ++     + + + C        +GG
Sbjct: 79  VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 138

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           GD+KLL+      G    F+              + I   R
Sbjct: 139 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR 179


>gi|87299155|emb|CAJ76215.1| competence transcription factor C [Bacillus sp. Bt 49]
          Length = 186

 Score = 34.1 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 35/101 (34%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IP+ + I       L +  + +     ++     + + + C        +GG
Sbjct: 79  VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 138

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           GD+KLL+      G    F+              + I   R
Sbjct: 139 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR 179


>gi|325845118|ref|ZP_08168429.1| bacterial peptidase A24, N-terminal domain protein [Turicibacter
           sp. HGF1]
 gi|325488860|gb|EGC91258.1| bacterial peptidase A24, N-terminal domain protein [Turicibacter
           sp. HGF1]
          Length = 241

 Score = 34.1 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVF---- 69
               L+   +SD++  +I ++V +      +    L   +D     +  +VG +      
Sbjct: 107 FLSMLIIITVSDIYYQLILDKVLLFWGAIIVFLYVLYPQLDLMSALVSAVVGFLTLYVIG 166

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
           ++    F    +GGGD+KL        G  P+FLS      I    + +F+
Sbjct: 167 LLGQLLFKKEALGGGDIKLYAVVGFVLGIAPTFLSIFIASVIALSYILLFM 217


>gi|228951785|ref|ZP_04113884.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068955|ref|ZP_04202249.1| Peptidase A24A domain protein [Bacillus cereus F65185]
 gi|229078589|ref|ZP_04211147.1| Peptidase A24A domain protein [Bacillus cereus Rock4-2]
 gi|228704733|gb|EEL57161.1| Peptidase A24A domain protein [Bacillus cereus Rock4-2]
 gi|228714239|gb|EEL66120.1| Peptidase A24A domain protein [Bacillus cereus F65185]
 gi|228807907|gb|EEM54427.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 249

 Score = 34.1 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IP+ + I      +L +  + +     ++     + + + C        +GG
Sbjct: 122 VTDYLYMLIPDCILISFAFLLILESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KLL+      G    F+              + I   R+                 +
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKRI----------------EV 225

Query: 144 KNKIPYGIAISMGGL 158
           +  IP+G  IS+G +
Sbjct: 226 RKPIPFGPFISLGAI 240


>gi|188990483|ref|YP_001902493.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732243|emb|CAP50435.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas
           campestris pv. campestris]
          Length = 287

 Score = 34.1 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 21/154 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
           ++    LV  +  DL   ++P+++++ ++   L+ +   L M  +   L   VG +    
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192

Query: 72  CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   +++G +L    L  +   
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILISSLVGAVLGSIWLFAKGRD 251

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
              P               IP+G  +++ G + +
Sbjct: 252 RATP---------------IPFGPYLAIAGWVVF 270


>gi|147828305|emb|CAN66482.1| hypothetical protein VITISV_015389 [Vitis vinifera]
          Length = 385

 Score = 34.1 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 10/16 (62%), Positives = 15/16 (93%)

Query: 146 KIPYGIAISMGGLISY 161
            IPYG+A+S+GGL+S+
Sbjct: 222 GIPYGVALSVGGLLSF 237


>gi|289661859|ref|ZP_06483440.1| type II secretory pathway prepilin signal peptidase [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 287

 Score = 34.1 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 21/154 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
           ++    LV  +  DL   ++P+++++ ++   L+ +   L M  +   L   VG +    
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192

Query: 72  CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   +++G IL           
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILISSLVGAILG---------- 241

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                    V K       IP+G  +++ G + +
Sbjct: 242 -----SAWLVAKGRDRATPIPFGPYLAVAGWVVF 270


>gi|195501439|ref|XP_002097796.1| GE24273 [Drosophila yakuba]
 gi|194183897|gb|EDW97508.1| GE24273 [Drosophila yakuba]
          Length = 1100

 Score = 34.1 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 2   KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40
           K   +    +F I PFC+VF A  D+    I N + +++
Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235


>gi|194900912|ref|XP_001979999.1| GG16891 [Drosophila erecta]
 gi|190651702|gb|EDV48957.1| GG16891 [Drosophila erecta]
          Length = 1097

 Score = 34.1 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 2   KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40
           K   +    +F I PFC+VF A  D+    I N + +++
Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235


>gi|116008008|ref|NP_001036711.1| guanylyl cyclase at 88E, isoform D [Drosophila melanogaster]
 gi|113194781|gb|ABI31167.1| guanylyl cyclase at 88E, isoform D [Drosophila melanogaster]
          Length = 1097

 Score = 34.1 bits (77), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 2   KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40
           K   +    +F I PFC+VF A  D+    I N + +++
Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235


>gi|260718943|ref|YP_003225084.1| putative type II secretion protein EtpN [Escherichia coli O103:H2
           str. 12009]
 gi|257762454|dbj|BAI33950.1| putative type II secretion protein EtpN [Escherichia coli O103:H2
           str. 12009]
          Length = 277

 Score = 34.1 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIIC 72
           +    L+  A+ D  +AM+P+ +++ +L   LL +   G +  E   +  + G +     
Sbjct: 138 LFIAMLLVLAVIDCRTAMLPDVLTLSLLWLGLLFSLQGGRVPLEEAVVGAVSGYLCLWGL 197

Query: 73  FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           +  F F      +G GD KL  +   W GW     S L F ++ G I++V +  V     
Sbjct: 198 YWLFRFVTGREGLGYGDFKLAAALGAWMGW-QVLPSVLLFASVSGLIITVLLRFVTATDF 256

Query: 129 HIPIFGMFVPKS 140
             P+        
Sbjct: 257 TRPLPFGPWLAL 268


>gi|209526138|ref|ZP_03274669.1| peptidase A24A domain protein [Arthrospira maxima CS-328]
 gi|209493394|gb|EDZ93718.1| peptidase A24A domain protein [Arthrospira maxima CS-328]
          Length = 271

 Score = 34.1 bits (77), Expect = 8.2,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF-- 76
           LV  +L D+ +  +PN ++   L   L    LLG+    +   L+VG++  ++    F  
Sbjct: 116 LVALSLIDIDTLTLPNPLTQSGLVVGLCFQGLLGLKTAGVIDQLMVGVLGAVLGLWLFEA 175

Query: 77  -------AFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA----ILGGILSVFILTV 123
                  AF    MG GD KL      W GW    ++          I  G ++V IL  
Sbjct: 176 IAFLGSMAFGQTAMGAGDAKLAALMGAWLGWKMLLVASFIACGLGAFIGAGAMAVGILDR 235

Query: 124 RMITNHIPIFGMFV 137
           R      P   +  
Sbjct: 236 RQPMPFGPFLAIAA 249


>gi|332160543|ref|YP_004297120.1| prepilin peptidase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325664773|gb|ADZ41417.1| prepilin peptidase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330863531|emb|CBX73647.1| type 4 prepilin-like proteins leader peptide-processing enzyme
           [Yersinia enterocolitica W22703]
          Length = 277

 Score = 34.1 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFII 71
           L+  + ++  A  D+   ++P+ +++ +L    ++          L  L  + G +    
Sbjct: 130 LLFLWAIIALAFIDIEHYILPDCITLPLLWCGLVININNSFSPLSLSVLGAVTGYVFLWF 189

Query: 72  CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
            +  F      + MG GD KL+ +   WFG     + FL  ++   GI++  I+
Sbjct: 190 PYWIFKVFKNIDGMGYGDFKLMAALGAWFGVI--AIPFLVLLSSCFGIIAYIII 241


>gi|229177812|ref|ZP_04305185.1| Peptidase A24A domain protein [Bacillus cereus 172560W]
 gi|228605603|gb|EEK63051.1| Peptidase A24A domain protein [Bacillus cereus 172560W]
          Length = 249

 Score = 34.1 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 40/115 (34%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IP+ + I       L +  + +     ++     + + + C        +GG
Sbjct: 122 VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           GD+KLL+      G    F+              + I   R+       FG F+ 
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKRIEVRKPLPFGPFIS 236


>gi|119716638|ref|YP_923603.1| peptidase A24A, prepilin type IV [Nocardioides sp. JS614]
 gi|119537299|gb|ABL81916.1| peptidase A24A, prepilin type IV [Nocardioides sp. JS614]
          Length = 242

 Score = 34.1 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 16/159 (10%)

Query: 20  VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79
           V  A+ DL + ++P  V    L +  + A L G+  +     +  GL   ++   FFA  
Sbjct: 95  VALAVVDLRTRLLPTVVVWPTLAATAVLAVLSGLLDDDQDALVRAGLGGVVVFALFFALW 154

Query: 80  I-----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134
                 MG GDV+L     +  G+          + I GG L+  +           +  
Sbjct: 155 WIHPAGMGYGDVRLSAVLGLALGYLGWAE---LAIGIYGGFLAFSV--------PGLLLA 203

Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173
           +      +++   P+G  +  G L       L+     G
Sbjct: 204 LLRRDRAILRAAYPFGPFLLAGALAGVVLGPLWTGLASG 242


>gi|293375536|ref|ZP_06621810.1| bacterial Peptidase A24 N-terminal domain protein [Turicibacter
           sanguinis PC909]
 gi|292645753|gb|EFF63789.1| bacterial Peptidase A24 N-terminal domain protein [Turicibacter
           sanguinis PC909]
          Length = 252

 Score = 34.1 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 15  PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVF---- 69
               L+   +SD++  +I ++V +      +    L   +D     +  +VG +      
Sbjct: 107 FLSMLIIITVSDIYYQLILDKVLLFWGAIIVFLYVLYPQLDLMSALVSAVVGFLTLYVIG 166

Query: 70  IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
           ++    F    +GGGD+KL        G  P+FLS      I 
Sbjct: 167 LLGQLLFKKEALGGGDIKLYAVVGFVLGIAPTFLSIFIASVIA 209


>gi|260587083|ref|ZP_05852996.1| peptidase A24A, prepilin type IV [Blautia hansenii DSM 20583]
 gi|260542573|gb|EEX23142.1| peptidase A24A, prepilin type IV [Blautia hansenii DSM 20583]
          Length = 152

 Score = 34.1 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 35  RVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC---FCFFAFNIMGGGDVKLLTS 91
           RV    +  F LT F   M    IA  L  GL + + C   F  F F ++G GD+KL + 
Sbjct: 7   RVVNGFIVVFFLTGFFWQMGANGIAGTLSGGLGLLLPCVLLFPLFYFRMLGAGDIKLFSG 66

Query: 92  TAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
             ++ G T +    +     LGG+LS   L 
Sbjct: 67  LGIFLGVT-AVFKLILCSLFLGGLLSFAFLI 96


>gi|21232531|ref|NP_638448.1| type IV pre-pilin leader peptidase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767384|ref|YP_242146.1| type IV pre-pilin leader peptidase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|7674104|sp|Q56763|LEP4_XANCP RecName: Full=Type 4 prepilin-like proteins leader
           peptide-processing enzyme; Includes: RecName:
           Full=Leader peptidase; AltName: Full=Prepilin peptidase;
           Includes: RecName: Full=N-methyltransferase
 gi|529683|gb|AAC43571.1| XpsO [Xanthomonas campestris]
 gi|21114323|gb|AAM42372.1| type IV pre-pilin leader peptidase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|37784401|gb|AAP43033.1| PilD [Xanthomonas campestris pv. campestris]
 gi|66572716|gb|AAY48126.1| type IV pre-pilin leader peptidase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|1586804|prf||2204377A type IV pre-pilin leader peptidase
          Length = 287

 Score = 34.1 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 21/154 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
           ++    LV  +  DL   ++P+++++ ++   L+ +   L M  +   L   VG +    
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192

Query: 72  CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   +++G +L    L  +   
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILISSLVGAVLGSIWLFAKGRD 251

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
              P               IP+G  +++ G + +
Sbjct: 252 RATP---------------IPFGPYLAIAGWVVF 270


>gi|17228810|ref|NP_485358.1| type 4 prepilin peptidase [Nostoc sp. PCC 7120]
 gi|17130662|dbj|BAB73272.1| type 4 prepilin peptidase [Nostoc sp. PCC 7120]
          Length = 269

 Score = 34.1 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 30/157 (19%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM----DYELIALHLLVGLIVFIICFC 74
           L+  +L DL +  +PN ++   L   L+   ++G         +  HL++G++  ++   
Sbjct: 114 LLALSLIDLDTMTLPNPLTKSGLVLGLVFQMIVGYAADPTLSGLIRHLMMGIVGAVLGLW 173

Query: 75  FFAF----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
            F              MG GD KL      W GW    L+ L    +   +    IL  +
Sbjct: 174 LFEAIALLGVVFQKEAMGAGDAKLAAMMGAWLGWRYLLLAGLIACTLGALVGVGAILLSK 233

Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                                KIP+G  ++ G LI+ 
Sbjct: 234 RKWGQ----------------KIPFGPFLASGALITL 254


>gi|251788930|ref|YP_003003651.1| Prepilin peptidase [Dickeya zeae Ech1591]
 gi|247537551|gb|ACT06172.1| Prepilin peptidase [Dickeya zeae Ech1591]
          Length = 283

 Score = 34.1 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 18  CLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76
            L+  A  D  + ++P+ +++ +L G  L       +  E   +  + G +   + +  F
Sbjct: 141 ILLALAAIDARTQLLPDVMTLPLLWGGLLFNLADTFVPLEQAVVGAVAGYLSLWLIYWAF 200

Query: 77  AF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132
                   +G GD KLL +   W GW  +  + +   ++ G   ++    +  +    P+
Sbjct: 201 RLLSGREALGHGDFKLLAALGAWLGW-QALPNLVLIASLTGLTATLLWRRIHRLNMQQPL 259

Query: 133 F 133
            
Sbjct: 260 A 260


>gi|195940440|ref|ZP_03085822.1| hypothetical protein EscherichcoliO157_29285 [Escherichia coli
           O157:H7 str. EC4024]
          Length = 211

 Score = 34.1 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 20/145 (13%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           + +  ++ S + ++    L   A  DL S ++P          + +T    G+ Y+    
Sbjct: 59  LNQLSLIQSIIVIVFYAFLTLMACIDLLSFLLP--------RLYTVTFIFSGLLYQTWNN 110

Query: 61  HLLVGLIVFIICFCFFAFNIM-----------GGGDVKLLTSTAVWFGWTPSFLSFLFFV 109
           ++L GL   ++ F    F  +           G GDV L+  T VWF  TP     + F+
Sbjct: 111 NILSGLFCAMLMFFIMLFVRLYFAYKNGTESFGMGDVLLIAGTGVWFP-TPEIACSIVFI 169

Query: 110 AILGGILSVFILTVRMITNHIPIFG 134
           A++GGI+   +  +     +IP   
Sbjct: 170 AVIGGIIFFTLGGLNKQKKYIPFGP 194


>gi|124248382|gb|ABM92811.1| IP15889p [Drosophila melanogaster]
          Length = 1032

 Score = 34.1 bits (77), Expect = 8.7,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 2   KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40
           K   +    +F I PFC+VF A  D+    I N + +++
Sbjct: 134 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 170


>gi|291285884|ref|YP_003502701.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615]
 gi|290765757|gb|ADD59717.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615]
          Length = 277

 Score = 34.1 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 14  IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIIC 72
           +    L+  A+ D  +AM+P+ +++ +L   LL +   G +  E   +  + G +     
Sbjct: 138 LFIAMLLVLAVIDCRTAMLPDVLTLSLLWLGLLFSLQGGSVPLEEAVVGAVSGYLCLWGL 197

Query: 73  FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128
           +  F F      +G GD KL  +   W GW     S L F ++ G I++V +  V     
Sbjct: 198 YWLFRFVTGREGLGYGDFKLAAALGAWMGW-QVLPSVLLFASVSGLIITVLLRFVTATDF 256

Query: 129 HIPIFGMFVPKS 140
             P+        
Sbjct: 257 TRPLPFGPWLAL 268


>gi|238928097|ref|ZP_04659857.1| possible prepilin peptidase [Selenomonas flueggei ATCC 43531]
 gi|238884057|gb|EEQ47695.1| possible prepilin peptidase [Selenomonas flueggei ATCC 43531]
          Length = 192

 Score = 34.1 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           ++    L++ +  DL   M+ + +++      L+ + +  +   L+         V   C
Sbjct: 49  MLFTAVLLWLSYLDLRDGMLYDCITLPFALLGLMASGVGSISDALLG---GALCGVLFYC 105

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLS 104
               A   +GGGDVK      +W GW  + ++
Sbjct: 106 LYIAARGGLGGGDVKFAVGLGLWLGWEAAIIA 137


>gi|229149606|ref|ZP_04277837.1| Peptidase A24A domain protein [Bacillus cereus m1550]
 gi|228633816|gb|EEK90414.1| Peptidase A24A domain protein [Bacillus cereus m1550]
          Length = 249

 Score = 34.1 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 43/115 (37%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D F  +IP+ + I      +L +  + +     ++     + + + C        +GG
Sbjct: 122 VTDYFYMLIPDCILISFAVLLILESIFVQLVTWTDSIVGSGVIFLLLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138
           GD+KLL+      G    F+              + I+  R+       FG F+ 
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIVLKRIEVGKPIPFGPFIS 236


>gi|195570766|ref|XP_002103375.1| GD18990 [Drosophila simulans]
 gi|194199302|gb|EDX12878.1| GD18990 [Drosophila simulans]
          Length = 1092

 Score = 34.1 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 2   KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40
           K   +    +F I PFC+VF A  D+    I N + +++
Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235


>gi|255020186|ref|ZP_05292255.1| Leader peptidase (Prepilin peptidase) / N-methyltransferase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970328|gb|EET27821.1| Leader peptidase (Prepilin peptidase) / N-methyltransferase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 261

 Score = 33.7 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 11/133 (8%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVS-------IVMLGSFLLTAFLLGMDYELIALHLLVG 65
           L   + L+     DL + ++P+R++       +++ G  L    +     E   L +L+G
Sbjct: 103 LCFAWALLALTWIDLETQLLPDRITKPGILAGLLLNGLGLWWPGIALASPESALLGVLLG 162

Query: 66  LIVF---IICFCFFAFN-IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121
             V       + +F     MGGGD+K L     W GW    ++      + G + ++++L
Sbjct: 163 YGVLWLLAAGYFYFTQRPGMGGGDLKFLGMIGAWLGWQGMAMTLFIAAIVGGFVATLYLL 222

Query: 122 TVRMITNHIPIFG 134
             +     IP   
Sbjct: 223 LGKGRDYAIPFGP 235


>gi|87299147|emb|CAJ76211.1| competence transcription factor C [Bacillus sp. Ob 11]
          Length = 185

 Score = 33.7 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 37/107 (34%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IP+ + I       L +  + +     ++     + + + C        +GG
Sbjct: 79  VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 138

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130
           GD+KLL+      G    F+              + I   R+    +
Sbjct: 139 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKRIEVRSL 185


>gi|190575613|ref|YP_001973458.1| putative type 4 prepilin-like proteins leader peptide processing
           enzyme [Stenotrophomonas maltophilia K279a]
 gi|190013535|emb|CAQ47170.1| putative type 4 prepilin-like proteins leader peptide processing
           enzyme [Stenotrophomonas maltophilia K279a]
          Length = 287

 Score = 33.7 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
           ++    L+  +  DL + ++P+++++ ++   L+ +   L M  +   +   VG +    
Sbjct: 133 IVLTCFLIALSGIDLRTQLLPDQLTLPLMWLGLIGSIDNLYMPAKPALVGAAVGYLSLWT 192

Query: 72  CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   ++LG I+    L  R   
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGVLPIILLSSVLGAIIGSIWLYSRGRD 251

Query: 128 NHIPIF 133
              PI 
Sbjct: 252 RATPIP 257


>gi|291557187|emb|CBL34304.1| Type IV leader peptidase family [Eubacterium siraeum V10Sc8a]
          Length = 138

 Score = 33.7 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 13/112 (11%)

Query: 1   MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60
           M  S M F+A+ +     L   ++ D+ +  IPN +S  +L +  L   L  +       
Sbjct: 1   MNGSVMQFAAITI----LLGIGSVMDIKTREIPNWISAAVLITAALNFNLANL------W 50

Query: 61  HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112
            ++V +I F +     A   +GGGDVKL+ + +V  G   SF   LF    +
Sbjct: 51  GIIVAVIFFSVAL---ATGKIGGGDVKLIAALSVVCGLWSSFALLLFAQTAM 99


>gi|37680196|ref|NP_934805.1| hypothetical protein VV2012 [Vibrio vulnificus YJ016]
 gi|37198943|dbj|BAC94776.1| hypothetical protein [Vibrio vulnificus YJ016]
          Length = 143

 Score = 33.7 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 15/131 (11%)

Query: 25  SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84
           SD+    I N    V++  F+ T +   +   +     L  L+  +I    +   ++G G
Sbjct: 21  SDVLKRKIYNANLAVLV--FVSTYYRHQLPDAMWLDATLYALLALLIGMLLWQRRLLGAG 78

Query: 85  DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144
           DVKL     VW  + P++   +   A+  G+L++             +    +  S   +
Sbjct: 79  DVKL-AVICVWMVF-PNWGELILLSALGAGVLAI-----------WQLARQRLAMSNNHQ 125

Query: 145 NKIPYGIAISM 155
             IP G++IS 
Sbjct: 126 GTIPLGVSISA 136


>gi|62484298|ref|NP_650424.3| guanylyl cyclase at 88E, isoform C [Drosophila melanogaster]
 gi|75016128|sp|Q8INF0|GCY8E_DROME RecName: Full=Soluble guanylate cyclase 88E
 gi|34980252|gb|AAQ84039.1| guanylyl cyclase long variant [Drosophila melanogaster]
 gi|61679338|gb|AAN13628.3| guanylyl cyclase at 88E, isoform C [Drosophila melanogaster]
          Length = 947

 Score = 33.7 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 2   KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40
           K   +    +F I PFC+VF A  D+    I N + +++
Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235


>gi|291563704|emb|CBL42520.1| Type II secretory pathway, prepilin signal peptidase PulO and
           related peptidases [butyrate-producing bacterium SS3/4]
          Length = 258

 Score = 33.7 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 29/160 (18%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66
           V S   ++    L+  +L+DL   +IP+R+ I     FL+TA  L    + I   L +GL
Sbjct: 105 VMSLRGILLTVVLMILSLTDLHGWIIPDRLQIAGCVIFLVTALFLPDPIQRIFGGLFLGL 164

Query: 67  I-------VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
           I       V ++         +GGGD+KL   T ++       L +L    + G   +  
Sbjct: 165 ILGGGMLLVSLVFDKLTGKESLGGGDIKLFFMTGLYLSSAWEILFYLILSCLFGLGFA-- 222

Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159
                               SF  + ++P+G AI+    I
Sbjct: 223 --------------------SFRKEKRVPFGPAIAAACFI 242


>gi|34980250|gb|AAQ84038.1| guanylyl cyclase short variant [Drosophila melanogaster]
          Length = 941

 Score = 33.7 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 2   KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40
           K   +    +F I PFC+VF A  D+    I N + +++
Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235


>gi|87299159|emb|CAJ76217.1| competence transcription factor C [Bacillus sp. Ob 14]
          Length = 186

 Score = 33.7 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 35/101 (34%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IP+ + I       L +  + +     ++     + + + C        +GG
Sbjct: 79  VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 138

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124
           GD+KLL+      G    F+              + I   R
Sbjct: 139 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR 179


>gi|229189487|ref|ZP_04316503.1| Peptidase A24A domain protein [Bacillus cereus ATCC 10876]
 gi|228593932|gb|EEK51735.1| Peptidase A24A domain protein [Bacillus cereus ATCC 10876]
          Length = 249

 Score = 33.7 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 16/135 (11%)

Query: 24  LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83
           ++D    +IP+ + I      +L +  + +     ++     + + + C        +GG
Sbjct: 122 VTDYLYMLIPDCILISFAFLLILESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 181

Query: 84  GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143
           GD+KLL+      G    F+              + I   R                  +
Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR----------------IEV 225

Query: 144 KNKIPYGIAISMGGL 158
           +  IP+G  IS+G +
Sbjct: 226 RKPIPFGPFISLGAI 240


>gi|331082854|ref|ZP_08331976.1| hypothetical protein HMPREF0992_00900 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400183|gb|EGG79832.1| hypothetical protein HMPREF0992_00900 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 169

 Score = 33.7 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 35  RVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC---FCFFAFNIMGGGDVKLLTS 91
           RV    +  F LT F   M    IA  L  GL + + C   F  F F ++G GD+KL + 
Sbjct: 24  RVVNGFIVVFFLTGFFWQMGENGIAGTLSGGLGLLLPCVLLFPLFYFRMLGAGDIKLFSG 83

Query: 92  TAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
             ++ G T +    +     LGG+LS   L 
Sbjct: 84  LGIFLGVT-AVFKLILCSLFLGGLLSFAFLI 113


>gi|62484477|ref|NP_731974.3| guanylyl cyclase at 88E, isoform A [Drosophila melanogaster]
 gi|61679339|gb|AAF55135.4| guanylyl cyclase at 88E, isoform A [Drosophila melanogaster]
          Length = 940

 Score = 33.7 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 2   KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40
           K   +    +F I PFC+VF A  D+    I N + +++
Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235


>gi|284053732|ref|ZP_06383942.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
           [Arthrospira platensis str. Paraca]
          Length = 271

 Score = 33.7 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 15/134 (11%)

Query: 19  LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78
           LV  +L D+ +  +PN ++   L   L    LLG+    +   L+VG++  ++    F  
Sbjct: 116 LVALSLIDIDTLTLPNPLTQSGLVLGLCFQGLLGLKTAGVIDQLMVGILGAVLGLWLFEA 175

Query: 79  -----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA----ILGGILSVFILTV 123
                        MG GD KL      W GW    ++          I  G ++V IL  
Sbjct: 176 IAFLGSMAFGQTAMGAGDAKLAALMGAWLGWKMLLVASFIACGLGAFIGAGAMAVGILDR 235

Query: 124 RMITNHIPIFGMFV 137
           R      P   +  
Sbjct: 236 RQPMPFGPFLAIAA 249


>gi|78048911|ref|YP_365086.1| type II secretory pathway prepilin signal peptidase [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325928499|ref|ZP_08189690.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas
           perforans 91-118]
 gi|78037341|emb|CAJ25086.1| type II secretory pathway prepilin signal peptidase [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325541216|gb|EGD12767.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas
           perforans 91-118]
          Length = 287

 Score = 33.7 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 21/154 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
           ++    LV  +  DL   ++P+++++ ++   L+ +   L M  +   L   VG +    
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192

Query: 72  CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   +++G IL    L      
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILISSLVGAILGSIWL------ 245

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                    V K       IP+G  +++ G + +
Sbjct: 246 ---------VAKGRDRATPIPFGPYLAIAGWVVF 270


>gi|195328847|ref|XP_002031123.1| GM24200 [Drosophila sechellia]
 gi|194120066|gb|EDW42109.1| GM24200 [Drosophila sechellia]
          Length = 1094

 Score = 33.7 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 2   KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40
           K   +    +F I PFC+VF A  D+    I N + +++
Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235


>gi|312136405|ref|YP_004003742.1| oligosaccharyl transferase stt3 subunit [Methanothermus fervidus
           DSM 2088]
 gi|311224124|gb|ADP76980.1| Oligosaccharyl transferase STT3 subunit [Methanothermus fervidus
           DSM 2088]
          Length = 854

 Score = 33.7 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 5/111 (4%)

Query: 9   SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68
           +   ++ P  +++     + +     RV   +  +  +   L  + +     +L V  +V
Sbjct: 178 AMFNVLFPILIMWFFAESIVAKTFKRRVIFAVATAISI--ILFSLSWVGYVFYLAVIFVV 235

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119
            ++ F    F  +  G V+ ++    W       L+ L    I GGIL++ 
Sbjct: 236 ALVYFGLRYF--IERGKVEYVSKLD-WIKGQRELLALLIVAIICGGILTIG 283


>gi|294624335|ref|ZP_06703035.1| type II secretory pathway prepilin signal peptidase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292601367|gb|EFF45404.1| type II secretory pathway prepilin signal peptidase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 287

 Score = 33.7 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 21/154 (13%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71
           ++    LV  +  DL   ++P+++++ ++   L+ +   L M  +   L   VG +    
Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192

Query: 72  CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127
            +  F        MG GD KLL +   W G     L  +   +++G IL    L      
Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILISSLVGAILGSIWL------ 245

Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161
                    V K       IP+G  +++ G + +
Sbjct: 246 ---------VAKGRDRATPIPFGPYLAIAGWVVF 270


>gi|78045067|ref|YP_359490.1| type IV prepilin peptidase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997182|gb|ABB16081.1| type IV prepilin peptidase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 249

 Score = 33.7 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 1/108 (0%)

Query: 26  DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85
           DL + ++P++++  +  + +L   +         +  ++     +      +   MGGGD
Sbjct: 114 DLENFLLPDKLTYPLFLAGVLINLITRELSWKSLIFGVITGFGLLFLLALISRGGMGGGD 173

Query: 86  VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133
           +KL      + G+ P  L  LF     GG+  + +L  +       + 
Sbjct: 174 IKLAAGLGAFLGF-PLILETLFLAFFFGGLTGIILLLTKKKARGDMVP 220


>gi|157372474|ref|YP_001480463.1| prepilin peptidase [Serratia proteamaculans 568]
 gi|157324238|gb|ABV43335.1| Prepilin peptidase [Serratia proteamaculans 568]
          Length = 287

 Score = 33.7 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 10  AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69
            + ++    L+  A+ D    ++P+ +++ +L   L   +L   D+   A+ L       
Sbjct: 142 VMMMVSSALLLSLAIIDFRHQILPDILTLTLLWCGLFWHWLEQRDFLGDAV-LGAIAGYL 200

Query: 70  IICFCFFAFNIMGG------GDVKLLTSTAVWFGWT 99
           ++   +++  +M G      GD KLL +   W GW 
Sbjct: 201 VLWLLYWSLRLMTGKEGLGYGDFKLLAALGAWLGWQ 236


>gi|219669543|ref|YP_002459978.1| peptidase A24A domain protein [Desulfitobacterium hafniense DCB-2]
 gi|219539803|gb|ACL21542.1| peptidase A24A domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 253

 Score = 33.7 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 7   VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYELIALHLL 63
           +   +       L+  A+ D  +  +P+  ++ +LG  ++  FLL      +E +A  L 
Sbjct: 100 LELGINFYFISVLLVLAVIDWDTYRLPDVFTLPLLGVGIVAGFLLPQGPSGWESLATALG 159

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
           VG + ++I         MG GD+KL+   + + G+  + ++ +F  +  G I  + +L+ 
Sbjct: 160 VGGVFWMITRL--YPEGMGLGDIKLIAGLSAFLGFPEALIA-VFIASFTGSIGGLIMLSF 216

Query: 124 --RMITNHIPIFGMFVPKSFL 142
             R     IP     V   ++
Sbjct: 217 EKRSFREQIPFGPYLVLGGWI 237


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.322    0.151    0.449 

Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,497,201,673
Number of Sequences: 14124377
Number of extensions: 142627571
Number of successful extensions: 1253962
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 10408
Number of HSP's that attempted gapping in prelim test: 1242419
Number of HSP's gapped (non-prelim): 18068
length of query: 176
length of database: 4,842,793,630
effective HSP length: 129
effective length of query: 47
effective length of database: 3,020,748,997
effective search space: 141975202859
effective search space used: 141975202859
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.9 bits)
S2: 77 (34.1 bits)