BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus str. psy62] (176 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus str. psy62] gi|254040406|gb|ACT57202.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus str. psy62] Length = 176 Score = 341 bits (875), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 176/176 (100%), Positives = 176/176 (100%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL Sbjct: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI Sbjct: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA Sbjct: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 >gi|315121893|ref|YP_004062382.1| peptidase A24A prepilin type IV [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495295|gb|ADR51894.1| peptidase A24A prepilin type IV [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 178 Score = 224 bits (571), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 117/176 (66%), Positives = 144/176 (81%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 MKE KMVFS +FL+ PFCL+ A LSDLFS MIPNR+S+V+LGSFLL A +G+ YE IAL Sbjct: 1 MKEDKMVFSVIFLVLPFCLISAGLSDLFSTMIPNRISVVLLGSFLLIAPFVGLGYEEIAL 60 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 H+LVGL VFI CF FF+ NIMGGGD KLLT+ ++WFGW S L FLF+VAI GGIL++ + Sbjct: 61 HVLVGLFVFIACFFFFSVNIMGGGDAKLLTTASLWFGWNISLLYFLFYVAIFGGILALVV 120 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 L +R IT +IP+ FVP+SF MKNKIPYG+AIS+GGL+SYPDS+LFK+AL G+S Sbjct: 121 LLIREITRYIPLLDKFVPRSFHMKNKIPYGVAISIGGLVSYPDSHLFKIALEGIST 176 >gi|150398539|ref|YP_001329006.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419] gi|150030054|gb|ABR62171.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419] Length = 170 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/170 (47%), Positives = 114/170 (67%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M +A+F++ PFCL FAA SDLF+ IPNR+S ++L SF++ + L G+D LH+ Sbjct: 1 MTIAAIFVVFPFCLAFAAFSDLFTMTIPNRISAIVLVSFVVISPLAGLDASKACLHVAAA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 ++VF CFC FA N+MGGGD KLLT++A+WFG+ S + FL +V+ GG+L++ +L +R Sbjct: 61 VLVFGACFCLFAVNVMGGGDAKLLTASAIWFGFEASLIDFLLYVSAFGGLLTIAVLLLRS 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 N I + VP+ L KIPYGIAI++GG +YP S L K+AL S Sbjct: 121 QENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMKLALTQFS 170 >gi|15887575|ref|NP_353256.1| components of type IV pilus, prepilin peptidase [Agrobacterium tumefaciens str. C58] gi|15155114|gb|AAK86041.1| components of type IV pilus, prepilin peptidase [Agrobacterium tumefaciens str. C58] Length = 170 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 81/166 (48%), Positives = 112/166 (67%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ +A+FLI P CL FAAL+DLFS IPN +++V+L SF A GMD++ L L G Sbjct: 1 MIVAAIFLILPLCLCFAALNDLFSMTIPNVITVVLLLSFAFIAPFAGMDFQTFGLSLAGG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 LIVF+ CF FA N+MGGGD KLLT AVW+G+ S + FL V ++GG L+V IL +R Sbjct: 61 LIVFLGCFALFAANVMGGGDAKLLTGAAVWYGFNISLVEFLLAVTLVGGALTVGILLLRS 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 + I FG+ +P S ++ KIPYGI I++ GL++Y ++ L K A+ Sbjct: 121 RSQEIMAFGIPIPDSLMVAQKIPYGIGIAIAGLLTYGEAPLVKAAI 166 >gi|209551757|ref|YP_002283674.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537513|gb|ACI57448.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 170 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 82/170 (48%), Positives = 111/170 (65%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ +AVF+I P CL A SDLF+ IPNRVS++++ SF + A L G+ + I +HL Sbjct: 1 MIAAAVFMILPLCLAMAGFSDLFTMTIPNRVSLILIVSFFVLAPLSGLGLQAIGMHLAAA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IVF CF FAFN+MGGGD KLL++TA+WFG S L + VAI+GG +++ IL VR Sbjct: 61 AIVFSACFALFAFNVMGGGDAKLLSATALWFGLNESLLFLMSDVAIIGGFITLLILMVRA 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 + I G+ VP S L+ KIPYGIAI++GG +++P S LF L L Sbjct: 121 QADTILAIGLPVPNSILIAKKIPYGIAIAIGGFMAFPSSPLFLTTLESLK 170 >gi|222084467|ref|YP_002542996.1| prepilin peptidase protein [Agrobacterium radiobacter K84] gi|221721915|gb|ACM25071.1| prepilin peptidase protein [Agrobacterium radiobacter K84] Length = 170 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 76/165 (46%), Positives = 112/165 (67%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ +A LI P CL AA+SDL + IPNRVS+++LG+F++ A +G+ I +H+ Sbjct: 1 MLEAATLLIFPLCLSVAAISDLLTMTIPNRVSLILLGAFIVLAPFVGLTLPEIGMHVAGA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IVF CF FA N+MGGGD KLL ++A+WFG+ PS L+FL +VA +GG +++ IL +R Sbjct: 61 AIVFCACFALFALNVMGGGDAKLLAASALWFGFDPSLLAFLVYVAFIGGAVTIAILMIRS 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170 ++ I G+ +P S L+ KIPYGIAI++GG +++P S L A Sbjct: 121 QSSAIMAMGLPLPNSLLIAKKIPYGIAIAIGGFLAFPSSPLVVAA 165 >gi|241207155|ref|YP_002978251.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861045|gb|ACS58712.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 170 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/170 (50%), Positives = 114/170 (67%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ +AVFLI P CL AA SDLF+ IPNR+S+++ SFL+ A G+ E+I +HL Sbjct: 1 MIAAAVFLILPLCLAMAAFSDLFTMTIPNRISVILTASFLVLAPFSGLGLEMIGMHLAGA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IVF CF FAFN+MGGGD KLL++TA+WFG S L + VA +GG++++ IL VR Sbjct: 61 AIVFSACFALFAFNVMGGGDAKLLSATALWFGLNESLLFLMTDVAAIGGLITLLILLVRT 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 +N I G+ VP S L+ KIPYGIAI++GG +++P S LF AL L Sbjct: 121 QSNTILAIGLPVPNSVLLAKKIPYGIAIAIGGFMAFPSSPLFLAALESLK 170 >gi|222147184|ref|YP_002548141.1| component of type IV pilus prepilin peptidase protein [Agrobacterium vitis S4] gi|221734174|gb|ACM35137.1| component of type IV pilus prepilin peptidase protein [Agrobacterium vitis S4] Length = 172 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/163 (46%), Positives = 105/163 (64%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 LI P CL AA +DLF IPN + +V+L F A +LG+ L LHL GLIVF C Sbjct: 8 LIMPLCLALAAFTDLFEMKIPNAIPLVLLIGFAALALVLGLPIGLAGLHLTAGLIVFFGC 67 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F FA N+MGGGD KLLT+ AVW+G+ S + FL VA+ GG+L++ IL +R N + Sbjct: 68 FTLFAVNVMGGGDAKLLTAAAVWYGFNISLVEFLIEVAMFGGVLTLMILALRSQANTVMA 127 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 G+ +P+S +++ KIPYGIAI++GG S+ + + +AL +S Sbjct: 128 LGLRLPRSLIVEKKIPYGIAIAIGGFCSFLSAPVVTLALATVS 170 >gi|116249979|ref|YP_765817.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254627|emb|CAK05701.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 170 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/170 (47%), Positives = 112/170 (65%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ +AVF+I P CL AA SDLF+ IPNR+S+++ SF + A L G+ I +HL Sbjct: 1 MIAAAVFVILPLCLAMAAFSDLFTMTIPNRISVILTASFFVLAPLSGLGLAEIGMHLAGA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IVF CF FAFN+MGGGD KL+++ A+WFG S L + VA++GG++++ IL VR Sbjct: 61 AIVFSACFALFAFNVMGGGDAKLMSAAALWFGLNESLLFLMTDVAMIGGLITLLILLVRG 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 ++ I G+ VP S L+ KIPYGIAI++GG +++P S LF AL L Sbjct: 121 QSDTILAIGLPVPNSVLLAKKIPYGIAIAIGGFMAFPSSPLFLAALESLK 170 >gi|325291661|ref|YP_004277525.1| components of type IV pilus, prepilin peptidase [Agrobacterium sp. H13-3] gi|325059514|gb|ADY63205.1| components of type IV pilus, prepilin peptidase [Agrobacterium sp. H13-3] Length = 170 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/170 (45%), Positives = 111/170 (65%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 MV +A+FLI PFCL FAAL+DLFS IPNR+++ +L SF++ A GMD + A+ + Sbjct: 1 MVIAAIFLILPFCLAFAALNDLFSMTIPNRITLFLLLSFIVVAPFSGMDLQTFAMSIAAA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 VF CF FA N MGGGD KLLT+ VW+G+ S + FL V +GG+L++ IL +R Sbjct: 61 AAVFFACFILFAANAMGGGDAKLLTAVTVWYGFNISLIEFLLAVTFIGGVLTLGILLLRS 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 + I G+ +P S ++ KIPYGI I++ GL++Y ++ L K A+ L+ Sbjct: 121 RSQEILAIGIPIPDSLMVVKKIPYGIGIAIAGLLTYGETPLVKAAIASLT 170 >gi|190889879|ref|YP_001976421.1| prepilin peptidase [Rhizobium etli CIAT 652] gi|190695158|gb|ACE89243.1| prepilin peptidase protein [Rhizobium etli CIAT 652] Length = 170 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 79/170 (46%), Positives = 111/170 (65%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + VF++ P CL AA SDLF+ IPNRVS++++ SFL+ A LG + I +HL Sbjct: 1 MIATGVFVVLPLCLAMAAFSDLFTMTIPNRVSLILIVSFLVLAPFLGFGLQAIGMHLAAA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IV CF FAFN+MGGGD KLL++TA+WFG S + VA +GG++++ IL VR Sbjct: 61 AIVLAACFALFAFNVMGGGDAKLLSATALWFGLNQSLTLLMADVAAVGGLITLLILLVRT 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 +N I G+ +P S L+ KIPYGIAI++GG +++P S +F AL L Sbjct: 121 QSNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESLK 170 >gi|327194696|gb|EGE61542.1| prepilin peptidase protein [Rhizobium etli CNPAF512] Length = 170 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 79/170 (46%), Positives = 111/170 (65%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + VF++ P CL AA SDLF+ IPNRVS++++ SFL+ A LG + I +HL Sbjct: 1 MIAAGVFVVLPLCLAMAAFSDLFTMTIPNRVSLILIVSFLVLAPFLGFGLQAIGMHLAAA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IV CF FAFN+MGGGD KLL++TA+WFG S + VA +GG++++ IL VR Sbjct: 61 AIVLAACFALFAFNVMGGGDAKLLSATALWFGLNQSLTLLMADVAAVGGLITLLILLVRT 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 +N I G+ +P S L+ KIPYGIAI++GG +++P S +F AL L Sbjct: 121 QSNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESLK 170 >gi|227823969|ref|YP_002827942.1| type IV prepilin peptidase CpaA [Sinorhizobium fredii NGR234] gi|227342971|gb|ACP27189.1| type IV prepilin peptidase CpaA [Sinorhizobium fredii NGR234] Length = 174 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 78/165 (47%), Positives = 110/165 (66%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M + + +I PFCL AA SDLF+ IPNR+S ++L +F++ A L G I+LH+ Sbjct: 1 MTIACILVILPFCLALAAFSDLFTMTIPNRISAILLAAFIVVAPLAGFGMGEISLHIAAA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +VF++CFC FA ++MGGGD KLLT++AVWFG S + FL +V+I GG+L++ +L +R Sbjct: 61 AVVFVVCFCLFAASVMGGGDAKLLTASAVWFGLDASLVDFLVYVSIFGGLLTLAVLLLRR 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170 N I G+ VP+ L KIPYGIAI+MGG +YP S L + A Sbjct: 121 QENAILASGIPVPQLLLTAKKIPYGIAIAMGGFAAYPSSPLMEAA 165 >gi|86355862|ref|YP_467754.1| prepilin peptidase protein [Rhizobium etli CFN 42] gi|86279964|gb|ABC89027.1| prepilin peptidase protein [Rhizobium etli CFN 42] Length = 170 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 87/170 (51%), Positives = 114/170 (67%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ +AVF+I P CL AA SDLF+ IPNR+S++++ SFL A G+ + I HL G Sbjct: 1 MIAAAVFVILPLCLAMAAFSDLFTMTIPNRISLILVVSFLALAPFFGLGLQAIGTHLAAG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IVF CF FAFN+MGGGD KLLT+TA+WFG S L + VAI+GG+L++ IL VR Sbjct: 61 AIVFAACFALFAFNVMGGGDAKLLTATALWFGLNESLLFLMTDVAIIGGLLTLLILLVRG 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 +N I G+ VP S L+ KIPYGIAI++GG +++P S LF AL L Sbjct: 121 QSNTILAIGLPVPNSLLLAKKIPYGIAIAIGGFMAFPSSPLFIAALESLK 170 >gi|15963892|ref|NP_384245.1| putative pilus assembly transmembrane protein [Sinorhizobium meliloti 1021] gi|15073067|emb|CAC41526.1| Putative pilus assembly transmembrane protein [Sinorhizobium meliloti 1021] Length = 174 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/173 (43%), Positives = 110/173 (63%) Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62 E +M+ + + ++ PF L AALSDL + IPNRVS+V+L SF A L G+D + LH Sbjct: 2 ELEMINATILVVFPFSLALAALSDLLTMTIPNRVSLVLLVSFFFVAPLAGLDLAQLGLHT 61 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + ++F + F FA N+MGGGD KLLT++A WFG+ S ++FL +V+ GG L++ +L Sbjct: 62 VAAGLIFAVSFALFAANVMGGGDAKLLTASAAWFGFNESLVTFLVYVSFFGGFLTLIVLL 121 Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 +R N I + VP+ L KIPYGIAI++GG +YP S L ++A LS Sbjct: 122 LRSKENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMQLAFAQLS 174 >gi|307315789|ref|ZP_07595303.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C] gi|307320424|ref|ZP_07599841.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83] gi|306893990|gb|EFN24759.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83] gi|306898557|gb|EFN29230.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C] Length = 170 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 75/170 (44%), Positives = 108/170 (63%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + + ++ PF L AALSDL + IPNRVS+V+L SF A L G+D + LH + Sbjct: 1 MINATILVVFPFSLALAALSDLLTMTIPNRVSLVLLVSFFFVAPLAGLDLAQLGLHTVAA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 ++F + F FA N+MGGGD KLLT++A WFG+ S ++FL +V+ GG L++ +L +R Sbjct: 61 GLIFAVSFALFAANVMGGGDAKLLTASAAWFGFNESLVTFLVYVSFFGGFLTLIVLLLRS 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 N I + VP+ L KIPYGIAI++GG +YP S L ++A LS Sbjct: 121 KENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMQLAFAQLS 170 >gi|307943143|ref|ZP_07658488.1| peptidase A24A prepilin type IV [Roseibium sp. TrichSKD4] gi|307773939|gb|EFO33155.1| peptidase A24A prepilin type IV [Roseibium sp. TrichSKD4] Length = 169 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 67/154 (43%), Positives = 100/154 (64%), Gaps = 2/154 (1%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 PF ++ AA+SDL + IPN++SIV+ F L A ++G+ ++ I LHL G +VF++CFC Sbjct: 10 PFLVIRAAVSDLLTMTIPNKISIVLCVLFALYAPIVGLGWQDIGLHLAGGAVVFVVCFCM 69 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FA N MGGGD KLLT+ A+WFGW+ L+FLF A+ G +L++F++ +R + Sbjct: 70 FAMNWMGGGDAKLLTAVALWFGWSADLLNFLFATAVFGMLLTLFLILIRPVLVLPERLAR 129 Query: 136 FVPKSFLM--KNKIPYGIAISMGGLISYPDSYLF 167 + L+ K IPYG+AI+ G L+ YP S L+ Sbjct: 130 IEWLTHLLHPKTGIPYGLAIAAGALLVYPTSPLY 163 >gi|90419762|ref|ZP_01227671.1| putative peptidase A24A, prepilin type IV [Aurantimonas manganoxydans SI85-9A1] gi|90335803|gb|EAS49551.1| putative peptidase A24A, prepilin type IV [Aurantimonas manganoxydans SI85-9A1] Length = 170 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 68/162 (41%), Positives = 98/162 (60%), Gaps = 3/162 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 A+ +I PF +++AA SDL S I NRVSI++ +F + A+ GM I HL +GL+ Sbjct: 5 AILVIFPFAMLYAAASDLVSMTIANRVSILLALAFPVVAYAAGMAPGAIGAHLGIGLVCL 64 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 +CF FA MGGGD KLL +TAVWFG TP L ++ F +I GG+L++ +LT+R Sbjct: 65 TVCFGMFAAGWMGGGDAKLLAATAVWFGPTPMLLEYILFASIYGGLLTIGLLTIRAFLQ- 123 Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170 P+ G+ F+ + + IPYGIA+ + GL Y S +A Sbjct: 124 -PVTGVAFIDRLLERETGIPYGIALGLAGLTVYSGSVWIDIA 164 >gi|315497467|ref|YP_004086271.1| peptidase a24a prepilin type IV [Asticcacaulis excentricus CB 48] gi|315415479|gb|ADU12120.1| peptidase A24A prepilin type IV [Asticcacaulis excentricus CB 48] Length = 171 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 3/166 (1%) Query: 6 MVFSAVF-LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64 M+ A+F L+ P CLV+AA+SDL S IPNR+S+++ G F A L+G+ A+H+ + Sbjct: 1 MLIPALFCLVYPACLVWAAVSDLRSMTIPNRLSLILAGVFFPAAVLMGLTPVGFAIHVGI 60 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 GL + +I F FAF ++GGGD KLL +TA+WF T L+FL + A++GG ++ +L R Sbjct: 61 GLGILVIGFAAFAFKVLGGGDAKLLAATALWFH-TDGVLAFLVYTALVGGGFTLLLLLAR 119 Query: 125 MITN-HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 ++P ++ K IPYG+AI GGL++ P S L+ + Sbjct: 120 QTLQIYLPTLPQWLQTLLKPKGDIPYGVAICAGGLLAIPYSDLWPL 165 >gi|110636418|ref|YP_676626.1| peptidase A24A, prepilin type IV [Mesorhizobium sp. BNC1] gi|110287402|gb|ABG65461.1| peptidase A24A, prepilin type IV [Chelativorans sp. BNC1] Length = 173 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 111/177 (62%), Gaps = 11/177 (6%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 MV +A+ +I PFC+ FAA+SD+ S I NRVSI+++ SF + A L+GM I +H L+G Sbjct: 1 MVEAAILVIFPFCMAFAAVSDMISLTIANRVSILLVLSFAVLAPLVGMPVAEIGMHFLLG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR- 124 V + F FA MGGGD KL+ ++AVWFG+ P + +L A+LGG L++ +++ R Sbjct: 61 GTVLLATFAVFAIGGMGGGDAKLMAASAVWFGFNPGLMDYLLATALLGGALTLALVSFRR 120 Query: 125 -----MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 ++ +H+ + F + K+ IPYG+A+ +GGLI +P + L + A+ L+A Sbjct: 121 SAFSPLVAHHV-LLRHFAEE----KSGIPYGVALGLGGLICFPQTPLMQWAMERLAA 172 >gi|328545281|ref|YP_004305390.1| peptidase A24A, prepilin type IV [polymorphum gilvum SL003B-26A1] gi|326415023|gb|ADZ72086.1| Peptidase A24A, prepilin type IV [Polymorphum gilvum SL003B-26A1] Length = 170 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 101/173 (58%), Gaps = 8/173 (4%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ +A+ ++ P + FAA SDL + IPNRVS+++ G+F++ A GM IALH + G Sbjct: 1 MLEAALLVVFPVLVAFAAASDLLTMTIPNRVSLLLAGAFVVLAVATGMSVAEIALHAVAG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 V +CF FA MGGGD K+ ++ +W G + ++FL I G +L++ +L+ R Sbjct: 61 GTVLAVCFFLFAMGWMGGGDAKIASAIGLWLGLSSHLVAFLMLTTIYGMVLTIVLLSFRR 120 Query: 126 ITNHIPIFGMFVPKSFLM-----KNKIPYGIAISMGGLISYPDSYLFKVALMG 173 + ++P G + +++ + IPYGIAI+ L +YP ++ F +A +G Sbjct: 121 L-PYLP--GGLGRQEWMLRLHDTRTGIPYGIAIAAAALQTYPTTHWFALAALG 170 >gi|163757625|ref|ZP_02164714.1| putative pilus assembly transmembrane protein [Hoeflea phototrophica DFL-43] gi|162285127|gb|EDQ35409.1| putative pilus assembly transmembrane protein [Hoeflea phototrophica DFL-43] Length = 147 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 86/141 (60%), Gaps = 1/141 (0%) Query: 32 IPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTS 91 IPNRVSIV+ SF + A L GMD ++ LIVF +CF FA N+MGGGD K+L++ Sbjct: 3 IPNRVSIVLGLSFFVVAPLSGMDLATFGWSIVAALIVFAVCFALFAVNVMGGGDAKILSA 62 Query: 92 TAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM-KNKIPYG 150 A+W+G++ + FL F I GG+L++ +L +R N + + + +P F + IPYG Sbjct: 63 AALWYGFSSDLVVFLGFTGIYGGLLALVVLMLRANQNILLVSPVPIPMHFFKDRAGIPYG 122 Query: 151 IAISMGGLISYPDSYLFKVAL 171 +AI +YPDS +F A+ Sbjct: 123 VAIGAAAFSTYPDSRIFIEAI 143 >gi|254502136|ref|ZP_05114287.1| peptidase, A24 (type IV prepilin peptidase) family [Labrenzia alexandrii DFL-11] gi|222438207|gb|EEE44886.1| peptidase, A24 (type IV prepilin peptidase) family [Labrenzia alexandrii DFL-11] Length = 170 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/166 (39%), Positives = 100/166 (60%), Gaps = 3/166 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + V ++ P + FA SDL + I NRVSI+++ F++ A + GM +H L Sbjct: 1 MIEAVVLVLFPMLVAFAGASDLLTMKIGNRVSILLIIGFIVLAAVNGMPVNDWGMHGLGL 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR- 124 ++VF+ CF FFA MGGGDVKL++S +WFG+ P + FLF VA+LG +L++ ++ +R Sbjct: 61 VVVFLPCFAFFAAGWMGGGDVKLISSVGLWFGFGPILIDFLFLVALLGCVLTLSLVVIRS 120 Query: 125 -MITNHIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168 ++ P+ G + + K+ IPYGIAIS LI YP S F Sbjct: 121 SLVVLPAPLRGQEWALRLHDAKSGIPYGIAISAAALIVYPRSDWFS 166 >gi|209886529|ref|YP_002290386.1| peptidase A24A, prepilin type IV [Oligotropha carboxidovorans OM5] gi|209874725|gb|ACI94521.1| peptidase A24A, prepilin type IV [Oligotropha carboxidovorans OM5] Length = 174 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 10/166 (6%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P + FAA+SD+ + I NRVS++++G F + A L GM+ E I H G V ++ F Sbjct: 12 PALMAFAAVSDILTMTISNRVSLLLIGGFFVLAGLTGMNLETIGWHAAAGATVLVVAFTC 71 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FAF +GGGD K+ S A+WFG+ L +L +I+GG L++ IL +R P+ Sbjct: 72 FAFGWIGGGDAKIAASAALWFGFA-HLLDYLVAASIVGGALTLIILQLR----RWPMPAF 126 Query: 136 FVPKSFLMK-----NKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 + +L++ IPYG+A++ G ++ YP++ ++A SA Sbjct: 127 LTSQDWLVRLHDKATGIPYGVALAAGAMLVYPNTEWVRLAAFATSA 172 >gi|114705459|ref|ZP_01438367.1| type IV prepilin peptidase, cpaA [Fulvimarina pelagi HTCC2506] gi|114540244|gb|EAU43364.1| type IV prepilin peptidase, cpaA [Fulvimarina pelagi HTCC2506] Length = 169 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 60/157 (38%), Positives = 92/157 (58%), Gaps = 4/157 (2%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P C++FAA+SD+ + IPNR+ +++ +F + A L M IA+HL GL F++ F Sbjct: 11 PLCMIFAAVSDIMTMTIPNRLCLLLALAFPVAALLSNMSTSDIAIHLGFGLAAFLLGFAM 70 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FAF ++GGGD KLL +TA W G + L +L LGG++++ I+ R + +PI G Sbjct: 71 FAFGLVGGGDAKLLAATAFWIGPAGA-LPYLLVATGLGGLMAIGIIYARNMA--VPITGY 127 Query: 136 FVPKSFLMKNK-IPYGIAISMGGLISYPDSYLFKVAL 171 L +N +PYG+A+ + GL SY DS A+ Sbjct: 128 VFADRLLSQNTGVPYGVALGIAGLYSYADSVYLTAAI 164 >gi|300021852|ref|YP_003754463.1| peptidase A24A prepilin type IV [Hyphomicrobium denitrificans ATCC 51888] gi|299523673|gb|ADJ22142.1| peptidase A24A prepilin type IV [Hyphomicrobium denitrificans ATCC 51888] Length = 169 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 93/156 (59%), Gaps = 4/156 (2%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P + FAA +DLF+ IPN +S+ ++G F+ A L M E +H++ L V ++ F Sbjct: 13 PIAMAFAAANDLFTMRIPNVISLALIGGFVALAVLTRMPLETFGMHVVCALGVLLLTFAL 72 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI--TNHIPIF 133 FAFN++GGGD KL+ + A+W G + L F+ F + GG+L + IL+ R + + +P+ Sbjct: 73 FAFNLLGGGDAKLMAAGALWMG-SAQILPFIAFTTMFGGVLCLLILSYRRMVPADLLPLP 131 Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 G + + +PYGIAI+ GL+ +P + LF++ Sbjct: 132 G-WAQRLHTAGGPVPYGIAIAASGLMVFPTTELFRM 166 >gi|118589701|ref|ZP_01547106.1| peptidase A24A, prepilin type IV [Stappia aggregata IAM 12614] gi|118437787|gb|EAV44423.1| peptidase A24A, prepilin type IV [Stappia aggregata IAM 12614] Length = 168 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 2/166 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 MV +A+ +I P + F SDL + I NRVS++++ F + A G+ + +H L Sbjct: 1 MVQAAILVIFPMLVAFGGASDLLTMTIQNRVSLLLIAGFAILAVATGLPLQAWGMHALAF 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +VF CF FFAF MGGGDVK +++ A+W G++ L F+ FVAI G L+ +L +R Sbjct: 61 AVVFAPCFLFFAFGWMGGGDVKFISAIALWIGFSQELLMFVLFVAIYGMFLTFGLLIMRQ 120 Query: 126 --ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + + + + K+ IPYGIAI++ GL Y +Y F + Sbjct: 121 QSVVPSVLYRQEWFARLHDSKSGIPYGIAIAIAGLQVYSSTYWFDL 166 >gi|148258233|ref|YP_001242818.1| putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp. BTAi1] gi|146410406|gb|ABQ38912.1| Putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp. BTAi1] Length = 174 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 10/165 (6%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 A L+ P + FAA SDLF+ I NRVS +L FL+ A L GM + + H+ G ++ Sbjct: 6 ARLLLFPALMAFAAASDLFTMTISNRVSFALLAGFLVLAPLSGMGMQDMLSHVGAGALLL 65 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ F FAF +GGGD K+ ++ A+WFG+ +++L + +I GG+L++ ++ R Sbjct: 66 VVAFACFAFGWIGGGDAKVASAAALWFGFA-HLMNYLLYASIFGGVLTLLLMQFR----Q 120 Query: 130 IPIFGMFVPKSFLMK-----NKIPYGIAISMGGLISYPDSYLFKV 169 P+ M + +L + + +PYGIA+++G L+ YPD+ K Sbjct: 121 WPLPYMLAGQPWLARLHARESGVPYGIALALGALMVYPDTDWVKT 165 >gi|319785610|ref|YP_004145086.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171498|gb|ADV15036.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 172 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 102/176 (57%), Gaps = 9/176 (5%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + +F++ PFC++FAA+SD+ S I NRV ++++ F L A L GMD+ H G Sbjct: 1 MLEALIFVVFPFCMLFAAISDMLSMTIANRVPVLLVVVFALVAPLTGMDWAAYGGHFAAG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR- 124 +V + F FA MGGGD KLL +TA+W G + + +L I+GG+L++ I+ R Sbjct: 61 ALVLAVTFGLFAIGGMGGGDAKLLAATAMWMGLNVNLVEYLVASTIIGGLLTLAIILYRK 120 Query: 125 ----MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 +T P F ++ +PYG+A+ +GGL++YPDS L AL L+A Sbjct: 121 SMLAAVTGQNPFLRHFADEA----KGVPYGVALGLGGLLTYPDSPLMIWALARLAA 172 >gi|299132285|ref|ZP_07025480.1| peptidase A24A prepilin type IV [Afipia sp. 1NLS2] gi|298592422|gb|EFI52622.1| peptidase A24A prepilin type IV [Afipia sp. 1NLS2] Length = 174 Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 87/150 (58%), Gaps = 2/150 (1%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P + FAA SDL + I NRVS++++ F + A + GM +E I H L GL V II F Sbjct: 12 PALMAFAAASDLLTMTISNRVSLLLIAGFFVLAIVTGMGWEAIGWHALAGLSVLIIAFAC 71 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FAF +GGGD K+ +TA+WFG L +L ++LGG+L++ IL R T + G Sbjct: 72 FAFGWIGGGDAKVAAATALWFG-FGYLLDYLLLASVLGGVLTLAILQFRNWTLPTWLLGQ 130 Query: 136 -FVPKSFLMKNKIPYGIAISMGGLISYPDS 164 ++ + IPYGIA++ L+ YPD+ Sbjct: 131 DWLVRLHGKDTGIPYGIALAAAALLIYPDT 160 >gi|254473700|ref|ZP_05087095.1| peptidase A24A, prepilin type IV [Pseudovibrio sp. JE062] gi|211957086|gb|EEA92291.1| peptidase A24A, prepilin type IV [Pseudovibrio sp. JE062] Length = 170 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 101/169 (59%), Gaps = 10/169 (5%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + + +I P L AA DLF+ IPN+++++++ +F+ AFLL + + + + +G Sbjct: 1 MIANGLLIIFPLLLAVAAFFDLFTMTIPNKLNLLLVVAFVAMAFLLQLPLQQVGMSFALG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 V +I F FA +MGGGDVK L + ++W G + + L F+ +I GG L++ IL +R Sbjct: 61 FGVMVIGFGLFALGVMGGGDVKFLAAISLWLGLSMNMLDFILLTSIYGGALTLVILALR- 119 Query: 126 ITNHIPIFGMFVP-KSFLM-----KNKIPYGIAISMGGLISYPDSYLFK 168 +P F F+ +++L+ K+ +PYGIAI++ G+ YP++ F Sbjct: 120 ---KVPYFPQFMHGQAWLLKLHDKKSGVPYGIAIAIAGIQVYPNTLWFS 165 >gi|239833239|ref|ZP_04681568.1| peptidase A24A prepilin type IV [Ochrobactrum intermedium LMG 3301] gi|239825506|gb|EEQ97074.1| peptidase A24A prepilin type IV [Ochrobactrum intermedium LMG 3301] Length = 187 Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 81/151 (53%), Gaps = 9/151 (5%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 +V A ++DL S I NRVSI + FLL A L G+ HL VG I II F F Sbjct: 25 LAMVTAMVTDLTSMTIRNRVSIGLTLGFLLLAPLCGISLSDFGWHLAVGGIALIITFALF 84 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI-----TNHIP 131 MGGGD KL+ +TA+W+G PS + +L V+ILGG+L++ I+ RM+ + Sbjct: 85 CLRAMGGGDAKLIAATALWYGPDPSLMDYLVMVSILGGVLTLTIILYRMVPRPLLADRFA 144 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162 G K IPYGIA+ GL ++P Sbjct: 145 FMGTLARKDV----GIPYGIALGAAGLWTFP 171 >gi|220922777|ref|YP_002498079.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS 2060] gi|219947384|gb|ACL57776.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS 2060] Length = 168 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 6/156 (3%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 PF + +AA SDL + IPN +S+V++ F L A LG+ + + LHL G + + F Sbjct: 11 PFLMAYAAASDLLTMTIPNALSLVLVAVFPLAALALGLSWSEVGLHLGAGGLTLALTFTL 70 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 F F ++GGGD KL +TA+W G+ P ++ ++ GG+L++ IL VR+ + +P + Sbjct: 71 FCFGLIGGGDAKLAAATALWLGFEP-LADYVLAASLAGGVLTLLILQVRI--HPLPRIAV 127 Query: 136 FVPKSFLMKNK---IPYGIAISMGGLISYPDSYLFK 168 P + + ++ +PYGIA++ L+ P + ++ Sbjct: 128 SWPWALRLHDRRTGVPYGIALAFAALVVCPAAPMWH 163 >gi|323137423|ref|ZP_08072501.1| peptidase A24A prepilin type IV [Methylocystis sp. ATCC 49242] gi|322397410|gb|EFX99933.1| peptidase A24A prepilin type IV [Methylocystis sp. ATCC 49242] Length = 168 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 95/165 (57%), Gaps = 6/165 (3%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + ++ P +VFAA SDLF+ IPNRVS +++ +L A L + + LH+ G Sbjct: 1 MIEALALIVFPTMMVFAAFSDLFTMTIPNRVSALLVLVYLALAVYLPIPLQTFGLHVSSG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 L + + F F F +GGGD KL ++TA+W GW L + +I GG+L+V I+ +R Sbjct: 61 LAMLALTFVLFQFGWVGGGDAKLASATALWLGWE-HLLDYGLVASIAGGVLTVIIIELR- 118 Query: 126 ITNHIP---IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167 + +P + F+ + N +PYGIA+++ GL+ YP + LF Sbjct: 119 -RHDLPRRVLSVAFIARLAEKTNGVPYGIALAVAGLLVYPQTGLF 162 >gi|92116015|ref|YP_575744.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14] gi|91798909|gb|ABE61284.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14] Length = 174 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 93/165 (56%), Gaps = 10/165 (6%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 A L+ P + FAA SDL + I NRVS++++ FL+ A L GM + LH GL V Sbjct: 6 ARLLLFPALMAFAAASDLLTMTISNRVSLLLVAGFLVVAALSGMSLHDMLLHAGAGLAVL 65 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ F FA +GGGD K+ + A+WFG+ L +L + ++ GG L++ +L R Sbjct: 66 LVAFTCFAMGWVGGGDAKVAAAAALWFGFG-HLLEYLVYASLFGGALTLLLLQFR----Q 120 Query: 130 IPIFGMFVPKSFLMK-----NKIPYGIAISMGGLISYPDSYLFKV 169 P+ +F + +L++ IPYGIA+++G L+ YP++ K Sbjct: 121 WPLPALFYSQDWLLRLHGKDTGIPYGIALALGALLIYPETGWIKA 165 >gi|146338125|ref|YP_001203173.1| putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp. ORS278] gi|146190931|emb|CAL74936.1| Putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp. ORS278] Length = 174 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 92/161 (57%), Gaps = 2/161 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 A LI P + FAA SDL + I NRVS+ ++ FL+ A L GM + +H G + Sbjct: 6 ARLLIFPALMAFAAASDLLTMTISNRVSLALVAGFLVMAPLSGMSMADMLMHCGAGASLL 65 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 +I F FAF +GGGD K+ ++ A+WFG+ +++L + +I GG+L++ ++ R Sbjct: 66 VIAFTCFAFGWIGGGDAKVASAAALWFGFA-HLMNYLLYASIFGGVLTLALMQFRQWPLP 124 Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + G ++ + + +PYGIA+++G L+ YP++ K Sbjct: 125 YGLAGQPWLARLHAKDSGVPYGIALALGALMVYPETEWVKA 165 >gi|260461951|ref|ZP_05810196.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum WSM2075] gi|259032198|gb|EEW33464.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum WSM2075] Length = 172 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 9/176 (5%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + +F++ PFC++FAA+SD+ S I NRVS++++ F L A L GM++ H G Sbjct: 1 MLEALIFVVFPFCMLFAAISDMLSMTIANRVSVLLVIVFALVAPLTGMEWATYGWHFAAG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR- 124 ++ + F FA MGGGD KLL +TAVW G + +L +GG+L++ I+ R Sbjct: 61 ALILAVTFGLFAMGGMGGGDAKLLAATAVWMGLNVHLVEYLVVSTFIGGLLTLAIVLYRK 120 Query: 125 ----MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 +IT P F +S +PYGIA+ +GGL++YPDS L AL L++ Sbjct: 121 SPLAVITGRNPFLRHFAEES----AGVPYGIALGLGGLLTYPDSPLMVWALARLAS 172 >gi|153008057|ref|YP_001369272.1| peptidase A24A prepilin type IV [Ochrobactrum anthropi ATCC 49188] gi|151559945|gb|ABS13443.1| peptidase A24A prepilin type IV [Ochrobactrum anthropi ATCC 49188] Length = 174 Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M +A+ I +V A ++DL S I NRVSI + F+L A G+ HL VG Sbjct: 1 MTAAAMTAIFALAMVTAMITDLTSMTIRNRVSIGLTLGFVLLAPFCGISLADYGWHLAVG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IV II F F MGGGD KL+ +TA+WFG S + ++ V+ILGG+L++ I+ RM Sbjct: 61 GIVLIITFSLFCLRAMGGGDAKLIAATALWFGPNASLMDYIVMVSILGGVLTLTIILYRM 120 Query: 126 I-----TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164 I + G K IPYGIA+ GL ++P S Sbjct: 121 IPRPLLADRYAFLGTLARKDV----GIPYGIALGAAGLWTFPLS 160 >gi|90425195|ref|YP_533565.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB18] gi|90107209|gb|ABD89246.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB18] Length = 174 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 2/155 (1%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P + FAA SDLF+ I NRVS++++ FL A L GM + I H+ G V I F Sbjct: 12 PALMAFAAASDLFTMTISNRVSLLLIVGFLALAGLGGMGLQEILSHIAAGGSVLAIAFAC 71 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FAF +GGGD K+ ++ A+WFG+ L +L + ++ GG L++ +L R + G Sbjct: 72 FAFGWVGGGDAKVASAAALWFGFD-HLLEYLVYASLFGGALTLLLLQFRQWPLPYALCGQ 130 Query: 136 -FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 ++ + + IPYGIA++ G L+ YP++ + Sbjct: 131 PWLLRLHAKETGIPYGIALATGALMIYPETEWIRA 165 >gi|91977983|ref|YP_570642.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB5] gi|91684439|gb|ABE40741.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB5] Length = 174 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 10/154 (6%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P + FAA SDLF+ I NRVS++++ F++ A L GM IA H GL V + F Sbjct: 12 PALMAFAAASDLFTMTISNRVSLLLVAGFIVLAPLTGMGLYEIASHFGAGLAVLAVAFGC 71 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FA +GGGD K+ + A+WFG+ L +L + ++ GG L++ +L+ R P+ Sbjct: 72 FAMGWVGGGDAKVAAAAALWFGFG-HLLDYLVYASLFGGALTLLLLSFR----QWPLPYQ 126 Query: 136 FVPKSFLMK-----NKIPYGIAISMGGLISYPDS 164 + +LM+ IPYGIA++MG L YP + Sbjct: 127 LAGQGWLMRLHAKETGIPYGIALAMGALAVYPQT 160 >gi|220922526|ref|YP_002497828.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS 2060] gi|219947133|gb|ACL57525.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS 2060] Length = 168 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 5/154 (3%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P + +AA SDL + IPN +S+ ++ F A L+G+D+ +A H G + ++CF Sbjct: 9 PAIMAYAAASDLLTMRIPNFISVALIVIFFGLAILVGVDWSTVAWHAAAGATMLVVCFLM 68 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 +A +GGGD KL +T +W G+TP L +L V ++GG++ V L++R +P F + Sbjct: 69 YALGWIGGGDAKLAAATVLWLGFTPVLLDYLLIVGLVGGMMGVLFLSIRRFP--LPAFAL 126 Query: 136 ---FVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166 ++ + K +PYGIA++ GL YPDS L Sbjct: 127 TWEWLVRLHDKKAGVPYGIALAAAGLAVYPDSLL 160 >gi|27376552|ref|NP_768081.1| pilus assembly protein prepilin peptidase subunit [Bradyrhizobium japonicum USDA 110] gi|27349693|dbj|BAC46706.1| pilus assembly protein prepilin peptidase subunit [Bradyrhizobium japonicum USDA 110] Length = 174 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 91/162 (56%), Gaps = 4/162 (2%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIV 68 A L+ P + FAA SDLF+ I NRVS+ ++ F A GM YE++ H+ G +V Sbjct: 6 ARLLLFPALMAFAAASDLFTMTISNRVSLALVAGFFALALSGGMAPYEMLG-HVGAGALV 64 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 ++ F FA +GGGD K+ S A+WFG+ ++FL + ++ GG L++ +L R Sbjct: 65 LVVAFTCFAMGWVGGGDAKVAASVALWFGFA-QLMNFLLYASLFGGALTLLLLQFRQWPL 123 Query: 129 HIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + G ++ + ++ IPYGIA+++ L+ YP++ K Sbjct: 124 PYGLAGQAWLARLHAKESGIPYGIALALSALMVYPETEWVKA 165 >gi|115525747|ref|YP_782658.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisA53] gi|115519694|gb|ABJ07678.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisA53] Length = 174 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 10/159 (6%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P + FAA SDL + I NRVS++++ F A L GM ++ + +H G V ++ F Sbjct: 12 PALMAFAAASDLLTMTISNRVSLLLVLGFFGMALLSGMGWQAVLMHASAGGTVLLVAFGC 71 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FA +GGGD K+ ++ A+WFG+ L +L + ++ GG L++ +L R P+ G+ Sbjct: 72 FAMGWIGGGDAKVASAAALWFGFD-QLLQYLVYASLFGGALTLMLLQFR----QWPLPGV 126 Query: 136 FVPKSFLMK-----NKIPYGIAISMGGLISYPDSYLFKV 169 + +L++ IPYGIA++ G L+ YP + + Sbjct: 127 LRGQPWLLRLHSNATGIPYGIALATGALMIYPHTAWIRA 165 >gi|296444398|ref|ZP_06886363.1| peptidase A24A prepilin type IV [Methylosinus trichosporium OB3b] gi|296258045|gb|EFH05107.1| peptidase A24A prepilin type IV [Methylosinus trichosporium OB3b] Length = 167 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 7/167 (4%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + ++ P +VFAA +DL + IPNRVSI ++ F A M + H G Sbjct: 1 MIEAVALVLFPTLMVFAAFTDLLTMTIPNRVSIALVVIFAALAAYTQMPLAIALSHASCG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +++ I+ F F +GGGD KL ++TA+W GW L + +++GG L++ IL +R Sbjct: 61 MVMLIVTFAMFQLGWIGGGDAKLASATALWLGWD-HLLDYGLAASLIGGALTLVILELR- 118 Query: 126 ITNHIPIFGMFVPK-SFLMKN--KIPYGIAISMGGLISYPDSYLFKV 169 P P+ + L + +PYGIA+++GGL+ YP S ++ + Sbjct: 119 --RREPRAVADSPRFAHLCDSMAGVPYGIALAIGGLLIYPQSRVWTL 163 >gi|13474658|ref|NP_106227.1| type IV prepilin peptidase, cpaA [Mesorhizobium loti MAFF303099] gi|14025413|dbj|BAB52013.1| type IV prepilin peptidase; CpaA [Mesorhizobium loti MAFF303099] Length = 175 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 104/178 (58%), Gaps = 9/178 (5%) Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63 + M+ + +F++ PFC++FAA+SD+ S I NRVS++++ F L A L GM++ H Sbjct: 2 APMLEALIFVVFPFCMLFAAISDMLSMTIANRVSVLLVVVFALVAPLTGMEWAAYGWHFA 61 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 G +V + F FA MGGGD KLL +TAVW G + +L ++GG+L++ IL Sbjct: 62 AGALVLAVTFGLFAMGGMGGGDAKLLAATAVWMGLNIHLVEYLVVSTLIGGLLTIAILLY 121 Query: 124 R-----MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 R +IT P F +S IPYGIA+ +GGL++YPDS L AL L++ Sbjct: 122 RKSPLAVITGRNPFLRHFAEESV----GIPYGIALGLGGLLTYPDSPLMVWALASLAS 175 >gi|167648154|ref|YP_001685817.1| peptidase A24A prepilin type IV [Caulobacter sp. K31] gi|167350584|gb|ABZ73319.1| peptidase A24A prepilin type IV [Caulobacter sp. K31] Length = 170 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 11/163 (6%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 A+ L+ P +V AAL D+ S IPN +S+ ++ +F+ A + G I L L GL Sbjct: 7 ALLLVFPALVVIAALKDVTSFTIPNWISLALIAAFVPAALVSGASLSSIGLCLATGLGAL 66 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR----- 124 ++ FA +GGGD KL ++A+W GW P+ L F+ + GG L++ IL++R Sbjct: 67 VVGMGMFAAGWIGGGDAKLFAASALWLGW-PATLPFMLTTGLAGGALTLGILSLRSGWFE 125 Query: 125 -MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166 ++ P +V K IPYG+AI++G L+++P L Sbjct: 126 PILAGSPP----WVRKLGANGGDIPYGVAIAVGALVTFPQGAL 164 >gi|114568968|ref|YP_755648.1| peptidase A24A, prepilin type IV [Maricaulis maris MCS10] gi|114339430|gb|ABI64710.1| peptidase A24A, prepilin type IV [Maricaulis maris MCS10] Length = 165 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 2/140 (1%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85 D +IPN + ++L +F + A G+ + + HLL G + +I F FA +GGGD Sbjct: 21 DATKFIIPNWLCGLVLLTFPIAAVAAGLGWAEVGNHLLGGALALVIGFALFAPGWVGGGD 80 Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145 KL + A+WFGW P FL+FL + GG+L V +L +R + +P+ + L N Sbjct: 81 AKLFAAAALWFGW-PEFLAFLIHTVLAGGVLVVILLALRWLAPRLPVLATRTEGTALAVN 139 Query: 146 K-IPYGIAISMGGLISYPDS 164 +PYGIAI+ G S P++ Sbjct: 140 APVPYGIAIAAGVFWSLPNT 159 >gi|295690800|ref|YP_003594493.1| peptidase A24A prepilin type IV [Caulobacter segnis ATCC 21756] gi|295432703|gb|ADG11875.1| peptidase A24A prepilin type IV [Caulobacter segnis ATCC 21756] Length = 170 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 3/155 (1%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P + AL DL S IPN VS+ ++ +F+ A + G+ I + L VGL ++ Sbjct: 13 PALAIVGALKDLTSYTIPNWVSLALIAAFVPAALISGVSLPQIGVCLAVGLGALVLGMGM 72 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR--MITNHIPIF 133 FA +GGGD KLL + A+W GW P+ L FL + + GG L+ IL +R + + Sbjct: 73 FAAGWIGGGDGKLLAACALWMGW-PAVLPFLLYTGLAGGALTFAILALRSGWVAPMVAGG 131 Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168 +V + +PYG+AI+ G LI++P + L + Sbjct: 132 PAWVRRLGQSGGDLPYGVAIAAGALIAFPKALLAQ 166 >gi|170740623|ref|YP_001769278.1| peptidase A24A prepilin type IV [Methylobacterium sp. 4-46] gi|168194897|gb|ACA16844.1| peptidase A24A prepilin type IV [Methylobacterium sp. 4-46] Length = 168 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 7/161 (4%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 PF + +AA SDL + IPN +S+ +L F + A LLG+ + HL G I + F Sbjct: 11 PFLMAYAAASDLLTMTIPNALSLALLAVFPVAALLLGLSWGEFGEHLAAGGITLAVTFAL 70 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 F F ++GGGD KL +TA+W G+ P ++ ++ GG+L++ IL R +P Sbjct: 71 FCFGLIGGGDAKLAAATALWLGFEP-LADYVLAASLAGGVLTLLILQAR--AYPLPRIAA 127 Query: 136 FVPKSFLM---KNKIPYGIAISMGGLISYPDSYLFKVALMG 173 P + + + +PYGIA++ L+ P + L++ AL+G Sbjct: 128 SWPWALRLHDTRTGVPYGIALAAAALVVCPSAPLWR-ALLG 167 >gi|170749894|ref|YP_001756154.1| peptidase A24A prepilin type IV [Methylobacterium radiotolerans JCM 2831] gi|170656416|gb|ACB25471.1| peptidase A24A prepilin type IV [Methylobacterium radiotolerans JCM 2831] Length = 187 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 6/161 (3%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 PF + +AA SDL + +IPNR+S+ +L F L A M + I H G +V ++ F Sbjct: 30 PFLMAYAAASDLLTMLIPNRISLALLAGFALLALTSAMSWTEIGFHCAAGAVVLLVTFTL 89 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FAF I+GGGD KL +TA+W G+ +L ++ GG L++ IL R T+ +P+ Sbjct: 90 FAFGIIGGGDAKLAAATALWLGFD-GLGDYLLVASVFGGALTLAILLAR--THPLPVRIA 146 Query: 136 FVPKSFLM---KNKIPYGIAISMGGLISYPDSYLFKVALMG 173 +P + + K IPYGIA++ L+ P++ ++ AL G Sbjct: 147 RMPFALHLHDAKTGIPYGIALAAAALLVLPETEVWTRALAG 187 >gi|75674501|ref|YP_316922.1| peptidase A24A, prepilin type IV [Nitrobacter winogradskyi Nb-255] gi|74419371|gb|ABA03570.1| peptidase A24A, prepilin type IV [Nitrobacter winogradskyi Nb-255] Length = 174 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 A L+ P + FAA SDL + I NRVS++++ FL+ A L GM + H GL V Sbjct: 6 ARLLLFPALMAFAAASDLLTMTISNRVSLLLVAGFLVLAPLSGMGLHEMLSHAGAGLAVL 65 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ F FA +GGGD K+ + A+WFG+ + L +L + ++ GG L++ +L R Sbjct: 66 VVAFSCFAMGWVGGGDAKVAAAAALWFGFGHT-LEYLVYASLFGGALTLLLLQFRQWPLP 124 Query: 130 IPIFGMFVPKSFLMKNK-IPYGIAISMGGLISYPDS 164 ++G KN IPYGIA++ L+ YP++ Sbjct: 125 ASLYGQDWLLRLHGKNTGIPYGIALAFAALLIYPET 160 >gi|16127177|ref|NP_421741.1| pilus assembly protein CpaA [Caulobacter crescentus CB15] gi|221235978|ref|YP_002518415.1| pilus assembly prepilin peptidase CpaA [Caulobacter crescentus NA1000] gi|7208423|gb|AAF40190.1|AF229646_2 CpaA [Caulobacter crescentus CB15] gi|13424575|gb|AAK24909.1| pilus assembly protein CpaA [Caulobacter crescentus CB15] gi|220965151|gb|ACL96507.1| pilus assembly prepilin peptidase CpaA [Caulobacter crescentus NA1000] Length = 170 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 + LI P + AL DL S IPN +S+ ++ +F+ A + G I L L VGL + Sbjct: 8 LLLIFPALAIVGALKDLTSYTIPNWISLALIAAFVPAALVSGAPLSQIGLCLAVGLGALV 67 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + FA +GGGD KL A+W GW P+ L+F+ + + GG+L+ IL +R Sbjct: 68 LGMGMFAAGWIGGGDGKLFAVCALWLGW-PAALTFMLYTGLAGGVLTFAILGLRSGWLAP 126 Query: 131 PIFG--MFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166 + G ++ K +PYG+AI++G L ++P L Sbjct: 127 AVAGGPAWLRKLGTTGGDLPYGVAIAVGALAAFPQGAL 164 >gi|254419519|ref|ZP_05033243.1| peptidase, A24 (type IV prepilin peptidase) family [Brevundimonas sp. BAL3] gi|196185696|gb|EDX80672.1| peptidase, A24 (type IV prepilin peptidase) family [Brevundimonas sp. BAL3] Length = 173 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 16/160 (10%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P ++ L DL + IPN +S+V+L +F A L+G+ +A+H+ VG I+ Sbjct: 13 PILMIATGLHDLTTMRIPNWISLVLLATFFPAALLVGLSPVEVAIHVGVGFAALIVGMIM 72 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FA +GGGD K L + +W G T L + AI+GG + +L VR + P M Sbjct: 73 FALRWIGGGDAKALAAACLWMGLT-GLAPLLLWTAIVGGGFCLLLLLVR---QYYP---M 125 Query: 136 FVPKSFLM---------KNKIPYGIAISMGGLISYPDSYL 166 P +F + K IPYG+AI++G LI++P+ L Sbjct: 126 VAPAAFRIGWLARLMEPKGDIPYGVAIAIGALIAFPEGDL 165 >gi|329847251|ref|ZP_08262279.1| type IV leader peptidase family protein [Asticcacaulis biprosthecum C19] gi|328842314|gb|EGF91883.1| type IV leader peptidase family protein [Asticcacaulis biprosthecum C19] Length = 172 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 2/153 (1%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P L++AA+SDL I NR+++++ G+F A LLG+ I +H V ++ Sbjct: 12 PAYLLWAAVSDLVRMTISNRLNLILAGAFFPAALLLGLSLGDIGIHTAVAAGGLVLGMVL 71 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI-PIFG 134 FA MGGGD KL+ +TA+W G F++ LF+ A+ GG L++ I+ R + P Sbjct: 72 FALRFMGGGDAKLIAATALWLG-LDGFIALLFYTALAGGALTLGIVIARKFFWALAPKLP 130 Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167 ++ + K IPYGIAI GGL++ P L+ Sbjct: 131 KWLGQHLEAKTGIPYGIAICAGGLLAIPHGDLW 163 >gi|188581658|ref|YP_001925103.1| peptidase A24A prepilin type IV [Methylobacterium populi BJ001] gi|179345156|gb|ACB80568.1| peptidase A24A prepilin type IV [Methylobacterium populi BJ001] Length = 172 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/138 (39%), Positives = 76/138 (55%), Gaps = 4/138 (2%) Query: 16 PFCLVFAALSDLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 PF + +AA SDL + I NRV S+V LG F+L A GM + ++ HL G + +I F Sbjct: 15 PFLMAYAAASDLLTMRISNRVTSLVSLG-FVLYAVASGMAWADLSRHLAAGALTLLITFF 73 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 FFA +GGGD KL STA+W G L +L ++LGG L++ IL+ R P+ Sbjct: 74 FFARGWIGGGDAKLAASTALWIGLG-HLLDYLLMASLLGGPLTLTILSARTYPLPKPVLK 132 Query: 135 M-FVPKSFLMKNKIPYGI 151 + F + IPYGI Sbjct: 133 LPFAVHLHDARTGIPYGI 150 >gi|86748909|ref|YP_485405.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris HaA2] gi|86571937|gb|ABD06494.1| Peptidase A24A, prepilin type IV [Rhodopseudomonas palustris HaA2] Length = 173 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 10/163 (6%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P + FAA SDLF+ I NRVS++++ FL A + GM LHL G+ V I F Sbjct: 12 PALMAFAAASDLFTMTISNRVSLLLVAGFLALAPMSGMSLADFGLHLGAGMTVLAIAFGC 71 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FA +GGGD K+ + A+WFG+ + FL + ++ GG L++ +L R P+ G Sbjct: 72 FAMGWIGGGDAKVAAAAALWFGFA-HLMDFLLYASLFGGALTLLLLGFRQWPLPYPLAG- 129 Query: 136 FVPKSFLMK-----NKIPYGIAISMGGLISYPDSYLFKVALMG 173 +S+L++ IPYGIA+++G L YP + K +G Sbjct: 130 ---QSWLLRLHAKETGIPYGIALAIGALAVYPQTEWIKAVDLG 169 >gi|254561619|ref|YP_003068714.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens DM4] gi|254268897|emb|CAX24858.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens DM4] Length = 172 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 6/152 (3%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 PF + +AA SDL + I NRV+ ++ FLL A + GMD+ ++ HL G + +I F Sbjct: 15 PFLMAYAAASDLLTMRISNRVTGLVFVGFLLYALVSGMDWSDLSRHLAAGSLTLVITFAL 74 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FA +GGGD KL STA+W G + +L +ILG L++ I++ R +P + Sbjct: 75 FARGWIGGGDAKLAASTALWIGLA-NLPEYLILASILGAPLTLSIVSARKYP--LPKLAL 131 Query: 136 FVPKSFLM---KNKIPYGIAISMGGLISYPDS 164 P + + K +PYGIA++ L+ P+S Sbjct: 132 KFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 163 >gi|163851901|ref|YP_001639944.1| peptidase A24A prepilin type IV [Methylobacterium extorquens PA1] gi|163663506|gb|ABY30873.1| peptidase A24A prepilin type IV [Methylobacterium extorquens PA1] Length = 169 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 6/152 (3%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 PF + +AA SDL + I NRV+ ++ FLL A + GMD+ ++ HL G + +I F Sbjct: 12 PFLMAYAAASDLLTMRISNRVTGLVFVGFLLYAMVSGMDWSDLSRHLAAGSLTLVITFAL 71 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FA +GGGD KL STA+W G + +L +ILG L++ I++ R +P + Sbjct: 72 FARGWIGGGDAKLAASTALWIGLA-NLPEYLILASILGAPLTLSIVSARKYP--LPKLAL 128 Query: 136 FVPKSFLM---KNKIPYGIAISMGGLISYPDS 164 P + + K +PYGIA++ L+ P+S Sbjct: 129 KFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 160 >gi|240139024|ref|YP_002963499.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens AM1] gi|240008996|gb|ACS40222.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens AM1] Length = 172 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 6/152 (3%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 PF + +AA SDL + I NRV+ ++ FLL A + GMD+ ++ HL G + +I F Sbjct: 15 PFLMAYAAASDLLTMRISNRVTGLVFVGFLLYAMVSGMDWSDLSRHLAAGSLTLVITFAL 74 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FA +GGGD KL STA+W G + +L +ILG L++ I++ R +P + Sbjct: 75 FARGWIGGGDAKLAASTALWIGLA-NLPEYLILASILGAPLTLSIVSARKYP--LPKLAL 131 Query: 136 FVPKSFLM---KNKIPYGIAISMGGLISYPDS 164 P + + K +PYGIA++ L+ P+S Sbjct: 132 KFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 163 >gi|85713503|ref|ZP_01044493.1| peptidase A24A, prepilin type IV [Nitrobacter sp. Nb-311A] gi|85699407|gb|EAQ37274.1| peptidase A24A, prepilin type IV [Nitrobacter sp. Nb-311A] Length = 174 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 10/160 (6%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 A L+ P + FAA SDL + I NRVS++++ FLL A L GM + H GL V Sbjct: 6 ARLLLFPALMAFAAASDLLTMTISNRVSLLLIAGFLLLAPLSGMGLHEMLSHAGAGLAVL 65 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ F FA +GGGD K+ ++A+WFG+ + L +L + ++ GG L++ +L R Sbjct: 66 VVAFSCFAMGWIGGGDAKVAAASALWFGFGHT-LEYLVYASLFGGALTLLLLQFR----Q 120 Query: 130 IPIFGMFVPKSFLMK-----NKIPYGIAISMGGLISYPDS 164 P+ + +L++ IPYGIA++ L+ YP++ Sbjct: 121 WPLPASLYSQDWLLRLHGRNAGIPYGIALAFAALLIYPET 160 >gi|39936738|ref|NP_949014.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris CGA009] gi|192292564|ref|YP_001993169.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris TIE-1] gi|39650594|emb|CAE29117.1| putative type IV prepilin peptidase, cpaA [Rhodopseudomonas palustris CGA009] gi|192286313|gb|ACF02694.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris TIE-1] Length = 174 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 4/156 (2%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P + FAA SDL + I NR+S++++ FL+ A L G+ I LH G +V + F Sbjct: 12 PALMAFAATSDLLTMTISNRISLLLVAGFLVLAPLTGLGAYDILLHFGAGALVLAVAFGC 71 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM--ITNHIPIF 133 FA +GGGD K++ + A+WFG+ L +L + ++ GG L++ +L R + + Sbjct: 72 FAMGWIGGGDAKVVAAAALWFGFD-HLLDYLLYASLFGGALTLLLLGFRQWPLPYRLACQ 130 Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 G +V + + IPYGIA++MG L+ YP + K Sbjct: 131 G-WVLRLHDQQTGIPYGIALAMGALVIYPHTEWIKA 165 >gi|307293448|ref|ZP_07573294.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1] gi|306881514|gb|EFN12730.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1] Length = 150 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 14/150 (9%) Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNI 80 A+++DL S +I NR+++ + L G+ + +A+ LLV LIVFI+ FA Sbjct: 14 ASVTDLRSRIISNRLNLTVAALAPLWWLACGLPLWPGMAVQLLVALIVFIVFAALFALGC 73 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140 MGGGDVKLL + A+WF W + LS L +A+LGGI+++ + +T Sbjct: 74 MGGGDVKLLGALALWFPWQAT-LSMLMLMAVLGGIVTIVTVVHHRMTRR----------- 121 Query: 141 FLMKNKIPYGIAISMGGLISYPDSYLFKVA 170 L + +IPYGIAIS L + Y+ + A Sbjct: 122 -LGQPQIPYGIAISFAALWLLGERYINQFA 150 >gi|294012431|ref|YP_003545891.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum UT26S] gi|292675761|dbj|BAI97279.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum UT26S] Length = 157 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 14/150 (9%) Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNI 80 A+++DL S +I NR+++ + G L G+ + +A+ LL GLIVF+ FA Sbjct: 21 ASVTDLRSRIISNRLNLTVAGLAPLWWLACGLPLWPGMAVQLLAGLIVFMAFAVLFALGC 80 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140 MGGGDVKLL + A+WF W + LS L +A+LGGI+++ + +T Sbjct: 81 MGGGDVKLLGALALWFPWQAT-LSMLMLMAVLGGIVTIVTVVHHRMTRR----------- 128 Query: 141 FLMKNKIPYGIAISMGGLISYPDSYLFKVA 170 L + +IPYGIAIS L + Y+ + A Sbjct: 129 -LGQPQIPYGIAISFAALWLLGERYINQFA 157 >gi|316933041|ref|YP_004108023.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris DX-1] gi|315600755|gb|ADU43290.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris DX-1] Length = 174 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 10/154 (6%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P +VFAA SDL + I NRVS+++L FL+ A + GM + +H+ G V + F Sbjct: 12 PALMVFAATSDLLTMTISNRVSLLLLAGFLVLAPMSGMSLAVFGMHVGAGAAVLAVAFGC 71 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FA +GGGD K+ + A+WFG+ L FL + ++ GG L++ +L+ R P+ + Sbjct: 72 FAMGWIGGGDAKVAAAAALWFGFG-DLLDFLLYASLFGGALTLLLLSFR----QWPLPYV 126 Query: 136 FVPKSFLMK-----NKIPYGIAISMGGLISYPDS 164 F +++L++ IPYGIA++MG L YP + Sbjct: 127 FAGQTWLLRLHAQETGIPYGIALAMGALAVYPQT 160 >gi|254293212|ref|YP_003059235.1| peptidase A24A prepilin type IV [Hirschia baltica ATCC 49814] gi|254041743|gb|ACT58538.1| peptidase A24A prepilin type IV [Hirschia baltica ATCC 49814] Length = 169 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 18/165 (10%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 LV+AA D+F IPN VSI++ FL TA+ + E H LVG I II F Sbjct: 14 LVYAACHDVFDRTIPNWVSILIAILFLPTAYFAELSLEQFGWHALVGAIALIIGIALFYL 73 Query: 79 NIMGGGDVKLLTSTAVWFGWT--PSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 I GGGD KL+ + ++W G P+FL+ AI GG++++ ++ +R + F Sbjct: 74 RIWGGGDAKLVAAVSLWMGLQAEPTFLAAF---AIAGGLIALPLIIIRRMK--------F 122 Query: 137 VPKS-----FLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 PK+ L K+PYG+AI+ G + P S++ A+ + A Sbjct: 123 EPKNDRLAKMLDTKKVPYGVAIAAGAFWAAPQSFVLMQAINSIGA 167 >gi|83312838|ref|YP_423102.1| Flp pilus assembly protein, protease CpaA [Magnetospirillum magneticum AMB-1] gi|82947679|dbj|BAE52543.1| Flp pilus assembly protein, protease CpaA [Magnetospirillum magneticum AMB-1] Length = 160 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 81/151 (53%), Gaps = 14/151 (9%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 +AVF++ L+ AA DL + I NRV + +L +F+ A G+ E LHL G+ Sbjct: 10 AAVFVV---ALLDAAWGDLRALRIRNRVPLALLAAFVPAALAGGLSGEDWLLHLGTGMAC 66 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL-SFLFFVAILGGILSVFILTVRMIT 127 F++ F+ + GGGD KL+ + +W G P+ L FL +A++GG++++ L R Sbjct: 67 FVVAAILFSLGVWGGGDAKLVPAVTLWLG--PAALPRFLLVMAVVGGLVALAALVRRRAE 124 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 G P ++ +PYGIAI+ GGL Sbjct: 125 A-----GSLRPA---LRTHVPYGIAIAAGGL 147 >gi|23016177|ref|ZP_00055936.1| COG4960: Flp pilus assembly protein, protease CpaA [Magnetospirillum magnetotacticum MS-1] Length = 160 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 77/156 (49%), Gaps = 18/156 (11%) Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63 S MVF A L AA DL S I NRV + +L +F+ A G D HL Sbjct: 9 SAMVFVAALL-------DAAWGDLRSLRIRNRVPLTILAAFVPWALCAGYDGGQWLAHLG 61 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL-SFLFFVAILGGILSVFILT 122 G++ F+ F+ + GGGD KL+ + +W G PS L FL +A+ GG++++ L Sbjct: 62 TGVLCFVAAAILFSLGLWGGGDAKLVPAVVLWVG--PSDLPRFLLIMAVAGGLVALAALV 119 Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 VR P +M+ IPYGIAI+ GGL Sbjct: 120 VRRAEAGGP--------HPVMRGHIPYGIAIAAGGL 147 >gi|114800034|ref|YP_761693.1| pilus assembly protein CpaA [Hyphomonas neptunium ATCC 15444] gi|114740208|gb|ABI78333.1| pilus assembly protein CpaA [Hyphomonas neptunium ATCC 15444] Length = 171 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 5/146 (3%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 MV +A FL C+V AAL D+ IPN +++ + G F+ A + G+ E+I HL+ G Sbjct: 4 MVLAAFFL--SLCVV-AALYDINQLKIPNWLNLTIAGLFIPAAAVSGLPLEIIGGHLMAG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + F++ F FAF I GGGD K++ + +W G + +F F +AI GGI ++ IL VR Sbjct: 61 GLAFVVAFGLFAFRIFGGGDAKMIPAVVLWMG-PEAAFAFAFKMAIAGGICAMLILAVRR 119 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGI 151 T + G F+ F K +PYG+ Sbjct: 120 TTPAEAVPG-FMRAPFQDKASVPYGV 144 >gi|304392386|ref|ZP_07374327.1| peptidase A24A prepilin type IV [Ahrensia sp. R2A130] gi|303295490|gb|EFL89849.1| peptidase A24A prepilin type IV [Ahrensia sp. R2A130] Length = 181 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 4/153 (2%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 AV + P C+++A SDL S I N V++ F + A L GM ++ IA+H V + Sbjct: 14 AVLTVFPLCVIYATFSDLLSMKISNLTCGVLVLGFFILAPLSGMGWQAIAIHSSVAVAAL 73 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ FF+ +MGGGD KL+ + ++W G + L ++ ++LG ++++ I+ +R Sbjct: 74 VMGMSFFSMGVMGGGDAKLIAAVSLWLGLGLT-LPYILAASLLGAVVTLVIVGLRKAKPR 132 Query: 130 IPIF---GMFVPKSFLMKNKIPYGIAISMGGLI 159 +P + K K IPYG+A+ L+ Sbjct: 133 LPQAFRDWRVMAKVLDRKEGIPYGLALGPAALV 165 >gi|83859355|ref|ZP_00952876.1| pilus assembly protein CpaA [Oceanicaulis alexandrii HTCC2633] gi|83852802|gb|EAP90655.1| pilus assembly protein CpaA [Oceanicaulis alexandrii HTCC2633] Length = 172 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 2/170 (1%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M+ M+ + L F ++ A D+ S IPN V ++ ++L A LG+ + Sbjct: 1 MRAPAMISNIALLGFAFLMLCAVWYDVRSFTIPNWVPGALIAGWVLAAPFLGLSWMDAGF 60 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 LL GL V + +A +GGGDVKLL + A+WFGW P L+F+ GG+L+V + Sbjct: 61 SLLTGLGVLALGMALWAPGWVGGGDVKLLAAGALWFGW-PDGLAFVLIAVAAGGVLAVIL 119 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNK-IPYGIAISMGGLISYPDSYLFKV 169 + +R + + +PI + + L + +PY IAI+ G L+ P + +F V Sbjct: 120 VILRQMAHLLPISSDRLGSTALAQGAPVPYAIAIAAGALLVLPQAQMFAV 169 >gi|218530652|ref|YP_002421468.1| peptidase A24A prepilin type IV [Methylobacterium chloromethanicum CM4] gi|218522955|gb|ACK83540.1| peptidase A24A prepilin type IV [Methylobacterium chloromethanicum CM4] Length = 165 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 14/155 (9%) Query: 6 MVFSAVFLIP----PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61 M SA +L+ PF + +AA+SDL + I NRV+ ++L +F+L A GM +ALH Sbjct: 1 MSGSAAYLLSCFGFPFLMAYAAVSDLLTMRISNRVTSLVLFTFVLYALADGMMLAELALH 60 Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + G +V F FA +GGGD KL +W G +L ++ GG+L++ IL Sbjct: 61 IAAGCLVLAAAFVMFARGWIGGGDAKLAAGATLWLG-IEYVAEYLIAASVFGGVLTLVIL 119 Query: 122 TVR-----MITNHIPIFGMFVPKSFLMKNKIPYGI 151 R M T +P F + + S + IPYGI Sbjct: 120 FARAYPLPMATLRLP-FAVNLHDS---RTGIPYGI 150 >gi|302381758|ref|YP_003817581.1| peptidase A24A prepilin type IV [Brevundimonas subvibrioides ATCC 15264] gi|302192386|gb|ADK99957.1| peptidase A24A prepilin type IV [Brevundimonas subvibrioides ATCC 15264] Length = 170 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 8/153 (5%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 ++ AALSDL + IPN +S +++ F AF +G+ + L++ V + ++ FA Sbjct: 16 VIVAALSDLTTMKIPNWISGLLIVGFFPAAFAVGLSPAEVGLNVAVAVGALLVGMGLFAG 75 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR----MITNHIPIFG 134 I+GGGD K++ +T +W G+ + + FL + + GG+L + ++ R + + P Sbjct: 76 RIIGGGDAKVMAATCLWLGFGGAGM-FLLYTGLFGGLLCLALIAARKSVVLPAHATP--- 131 Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167 +V + +PYG+AI G L ++P S L Sbjct: 132 GWVATLMEPRGDLPYGVAICAGALAAFPSSPLL 164 >gi|94497252|ref|ZP_01303824.1| type IV prepilin peptidase, cpaA [Sphingomonas sp. SKA58] gi|94423357|gb|EAT08386.1| type IV prepilin peptidase, cpaA [Sphingomonas sp. SKA58] Length = 157 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 14/147 (9%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMGG 83 +D+ S +I NR+++ + L G+D + +A LL+G IVF++ FA +MGG Sbjct: 24 TDMRSRIISNRLNMTVALLAPLWWLACGLDVWPGMATQLLLGAIVFVLFAALFALGMMGG 83 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GDVKLL + A+WF W ++ + +A+LGG +++ +L I Sbjct: 84 GDVKLLGALALWFPWQ-VLMALVMLMAVLGGAVTLVVLIHHRIAKKAG------------ 130 Query: 144 KNKIPYGIAISMGGLISYPDSYLFKVA 170 + +IPYG+AIS+ L + YL + A Sbjct: 131 QPEIPYGVAISLAALWVIGERYLNQFA 157 >gi|304320645|ref|YP_003854288.1| pilus assembly protein prepilin peptidase subunit [Parvularcula bermudensis HTCC2503] gi|303299547|gb|ADM09146.1| pilus assembly protein prepilin peptidase subunit [Parvularcula bermudensis HTCC2503] Length = 164 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 8/163 (4%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M S + L+ P L AA+ DL S IPNRV+ + ++ L A +G+ + + + Sbjct: 1 MFSSVISLVYPALLSVAAVYDLTSFKIPNRVTAALAVAWPLCALAVGIPFTMALSSVAFA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVFILTVR 124 + F FA +GGGDVKLL +T +W G P+ L F+ + I GG L+ +L+ R Sbjct: 61 FGILAAGFALFAIGKLGGGDVKLLAATTLWVG--PALALEFVLWTMIFGGGLAFALLSFR 118 Query: 125 MITNHIPIFGMFVPKSFLMKNK---IPYGIAISMGGLISYPDS 164 + +P+ M F + N+ +PYG+AI+ GL+ + + Sbjct: 119 RL--PLPVNVMSTGWLFDLYNRKKDMPYGVAIAASGLMLWSKT 159 >gi|154250687|ref|YP_001411511.1| peptidase A24A prepilin type IV [Parvibaculum lavamentivorans DS-1] gi|154154637|gb|ABS61854.1| peptidase A24A prepilin type IV [Parvibaculum lavamentivorans DS-1] Length = 187 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 90/160 (56%), Gaps = 11/160 (6%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P ++F AL DL + IPN +SI ++ F L +G+ + IALH+ GL++ + Sbjct: 30 PLAMIFGALWDLTTMTIPNLLSIALVAMFALLVPFVGLALQDIALHVAAGLVMLALGMGL 89 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FA +GGGD K +++ A+W GW+ L +L +I GG+L++ +L R + +P Sbjct: 90 FALGWIGGGDAKFVSAIALWIGWS-ELLGYLLLASIFGGVLTLLLLGFRKMP--LP---S 143 Query: 136 FVPKSFLM-----KNKIPYGIAISMGGLISYPDSYLFKVA 170 F+ + +L+ K+ IPYG+A++ L+ + + FK A Sbjct: 144 FMHREWLLRLHDRKSGIPYGVALAAAALVMFERTVWFKFA 183 >gi|312115330|ref|YP_004012926.1| peptidase A24A prepilin type IV [Rhodomicrobium vannielii ATCC 17100] gi|311220459|gb|ADP71827.1| peptidase A24A prepilin type IV [Rhodomicrobium vannielii ATCC 17100] Length = 161 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 49/82 (59%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 P LV+AA DL + +IPNR+ +V+ F + A L G+D IA H L+V + + Sbjct: 14 PVLLVWAAAVDLLTRVIPNRLVLVLAACFAVFALLAGLDAARIASHAGCALLVLVCAYGL 73 Query: 76 FAFNIMGGGDVKLLTSTAVWFG 97 FA +++GGGD KLL ++W G Sbjct: 74 FAASLLGGGDAKLLAVASLWIG 95 >gi|85373133|ref|YP_457195.1| type IV prepilin peptidase, cpaA [Erythrobacter litoralis HTCC2594] gi|84786216|gb|ABC62398.1| type IV prepilin peptidase, cpaA [Erythrobacter litoralis HTCC2594] Length = 167 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 20/138 (14%) Query: 25 SDLFSAMIPNRVS-IVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82 +DL S I N ++ + LG+ L + G+D + +A L V LI F IC FA MG Sbjct: 24 TDLRSRQIGNWLNGAIALGAPLFW-WSSGLDLWPGVAWQLGVALITFAICAGLFAMRWMG 82 Query: 83 GGDVKLLTSTAVWFGWTPS-FLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF-VPKS 140 GGDVKLLT+ A+W P+ F + + +A+LGG+L++ +FGM+ + + Sbjct: 83 GGDVKLLTALALWI--APALFFNLIVIMALLGGVLTL-------------LFGMWHLIRR 127 Query: 141 FLMKNKIPYGIAISMGGL 158 + IPYG+AIS GL Sbjct: 128 QRERLAIPYGVAISAAGL 145 >gi|294012228|ref|YP_003545688.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum UT26S] gi|292675558|dbj|BAI97076.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum UT26S] Length = 176 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 84/156 (53%), Gaps = 5/156 (3%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLV 64 M+ V L F LV AA+ D+ I N ++++G L A++ +E I + V Sbjct: 1 MMKDLVLLAVSFVLVAAAVEDMARLRISNIFPLLVIG--LYAAWVAAAGWENDIWRNGTV 58 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 L +F + FA MGGGDVKL+++ A+WF W + + +L +V + GG+L++ ++ R Sbjct: 59 FLGMFALGCGLFAMRAMGGGDVKLMSACALWFDWAGA-VPWLVYVTVGGGVLALVLMAGR 117 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + G + F K IPYG+AI++G +++ Sbjct: 118 RLVPQSWREGSSI-ALFDKKGPIPYGVAIALGTIMA 152 >gi|162147489|ref|YP_001601950.1| hypothetical protein GDI_1705 [Gluconacetobacter diazotrophicus PAl 5] gi|209545596|ref|YP_002277825.1| peptidase A24A prepilin type IV [Gluconacetobacter diazotrophicus PAl 5] gi|161786066|emb|CAP55648.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533273|gb|ACI53210.1| peptidase A24A prepilin type IV [Gluconacetobacter diazotrophicus PAl 5] Length = 162 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 82/146 (56%), Gaps = 14/146 (9%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 LV+AAL D+ IP++V +V LG T +L + I +LV + VF +CF + F Sbjct: 16 LVYAALHDVAVRTIPDQV-VVALGGLGATIAIL---HGHIVGSILVAICVFGLCFAIWWF 71 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFL-SFLFFVAILGGILSVFILTVRMITNHIPI----F 133 +GGGDVKLL++ ++ F P+ + S++ +A+ GG+L+ F L VR P+ F Sbjct: 72 GAIGGGDVKLLSAASLLF--PPAAVPSWILTIAMSGGVLAGFYLMVRHRVTVGPVRHGCF 129 Query: 134 GMFV-PKSFLMKNK--IPYGIAISMG 156 G V + + M+ +PY +AI+ G Sbjct: 130 GRIVRSERWRMRRGGPLPYAVAIAAG 155 >gi|220918101|ref|YP_002493405.1| peptidase A24A prepilin type IV [Anaeromyxobacter dehalogenans 2CP-1] gi|219955955|gb|ACL66339.1| peptidase A24A prepilin type IV [Anaeromyxobacter dehalogenans 2CP-1] Length = 151 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 21/154 (13%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF--- 75 + AA SDL S IPN +S LT + G+ L GL+ IC Sbjct: 1 MAVAAASDLASRRIPNALS--------LTVAVAGLAASTGPLQAASGLVASAICLALMLP 52 Query: 76 -FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT------VRMI-T 127 + +GGGDVKLL + A W F+ F VA+ GG+L++ +L +R++ Sbjct: 53 LWRRRAIGGGDVKLLAAAAAWVRLEHLFV-FGLAVALCGGLLALIVLARASAAELRLVRA 111 Query: 128 NHIPIFGMFVPK-SFLMKNKIPYGIAISMGGLIS 160 N + M P + IPYG+AI++G I+ Sbjct: 112 NAVASLAMSRPAVARSAGTSIPYGVAIALGAAIA 145 >gi|197106457|ref|YP_002131834.1| Flp pilus assembly protein, protease CpaA [Phenylobacterium zucineum HLK1] gi|196479877|gb|ACG79405.1| Flp pilus assembly protein, protease CpaA [Phenylobacterium zucineum HLK1] Length = 164 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 8/141 (5%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 LV+AA SD F +IPNRV ++ G++LL L + + L VG+ + FA Sbjct: 19 SLVWAAASDFFRYLIPNRVCALIAGAYLLAFPALALSAWVGGLG--VGIAALALGTILFA 76 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLS-FLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 +GGGDVKL + ++W G P+ LS F F ++ G L+V +L+ P Sbjct: 77 RGWVGGGDVKLAAALSLWAG--PALLSGFAFVTSLAGAALAVAMLSPLRRLMPRPAGETL 134 Query: 137 VPKSFLMKNKIPYGIAISMGG 157 ++ +P+G+ ++ GG Sbjct: 135 AEG---LRQPMPFGVPLAAGG 152 >gi|296284550|ref|ZP_06862548.1| type IV prepilin peptidase, cpaA [Citromicrobium bathyomarinum JL354] Length = 164 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 71/145 (48%), Gaps = 24/145 (16%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL-----IALHLLVGLIVFIICFC 74 V AA++DL S I N ++ G L A L L +AL V + F I Sbjct: 19 VTAAITDLRSRRIANWLT----GGVALGAPLFWWASSLSLWPGVALQFAVAVAAFAILAV 74 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 FA MGGGDVKLLT+ A+W P FL +F +AILGG+L++ FG Sbjct: 75 LFALRAMGGGDVKLLTALALWIAPLP-FLQLVFVMAILGGVLTL-------------AFG 120 Query: 135 MF-VPKSFLMKNKIPYGIAISMGGL 158 + + + + IPYG+AIS GL Sbjct: 121 AWHIMRRRKERLAIPYGVAISAAGL 145 >gi|307294435|ref|ZP_07574279.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1] gi|306880586|gb|EFN11803.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1] Length = 176 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 77/142 (54%), Gaps = 5/142 (3%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVGLIVFIICFCFFAF 78 + AA+ D+ I N ++++G L A++ +E I + V L +F + FA Sbjct: 15 IAAAVEDMARLRISNIFPLLVIG--LYAAWVAAAGWENDIWRNGTVFLGMFALGCGLFAL 72 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 MGGGD+KL+++ A+WF W + +L +V + GG+L++ ++ R + G + Sbjct: 73 RWMGGGDIKLMSTCALWFDWQ-GVVPWLVYVTVGGGVLALVLMIGRRLVPQAVREGSSI- 130 Query: 139 KSFLMKNKIPYGIAISMGGLIS 160 F K IPYG+AI++G +++ Sbjct: 131 ALFDKKGPIPYGVAIALGTIMA 152 >gi|238762405|ref|ZP_04623376.1| hypothetical protein ykris0001_26500 [Yersinia kristensenii ATCC 33638] gi|238699390|gb|EEP92136.1| hypothetical protein ykris0001_26500 [Yersinia kristensenii ATCC 33638] Length = 127 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 20/143 (13%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L+F SD+ I N I + + +LG+ A+++++ L +I + F F Sbjct: 3 LLFVCYSDIRHRTISNNFII----TIAINTVVLGLATHQ-AVNIIIPLSALLIGYIIFYF 57 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 +++GGGDVKL+T T S L+F+ + AI+GG+ + I GMFV Sbjct: 58 DLIGGGDVKLITVLLFALTTTQS-LNFILYTAIMGGV--------------VMIIGMFVN 102 Query: 139 KSFLMKNKIPYGIAISMGGLISY 161 + + + +PY +AIS G L+S+ Sbjct: 103 REDIKQRGVPYAVAISAGFLLSF 125 >gi|149186253|ref|ZP_01864567.1| type IV prepilin peptidase, cpaA [Erythrobacter sp. SD-21] gi|148830284|gb|EDL48721.1| type IV prepilin peptidase, cpaA [Erythrobacter sp. SD-21] Length = 237 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 2/94 (2%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMGG 83 +DL S I N++++ + L + G+D + + + L + F IC FFA MGG Sbjct: 24 TDLKSRTIGNKLNLAIAAGAPLFWWTTGLDLWPGVGIQLGIAAATFAICTLFFAIRQMGG 83 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117 GDVKLLT+ A+WF T +FL + +A+LG +L+ Sbjct: 84 GDVKLLTALALWFPPT-NFLGLVLVMAMLGWVLT 116 >gi|153949206|ref|YP_001399596.1| type IV prepilin peptidase family protein [Yersinia pseudotuberculosis IP 31758] gi|152960701|gb|ABS48162.1| type IV prepilin peptidase family [Yersinia pseudotuberculosis IP 31758] Length = 132 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 28/146 (19%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF--- 75 L+F SD+ +I N+ I S A +L ++ H V +I+ I+ F Sbjct: 8 LLFVCYSDIRHRIISNKFVI----SIAFNAIIL-----ILVTHHTVSIIIPIVALFFGYI 58 Query: 76 -FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 F FN+MGGGDVKL+T + S L+F+ + AI+GG+ + + G Sbjct: 59 IFHFNVMGGGDVKLITVLLLALTAEQS-LNFIIYTAIMGGV--------------VMLVG 103 Query: 135 MFVPKSFLMKNKIPYGIAISMGGLIS 160 + + ++ + K IPY IAI+ G L+S Sbjct: 104 LLINRADIQKRGIPYAIAITAGFLLS 129 >gi|326388866|ref|ZP_08210448.1| type IV prepilin peptidase, cpaA [Novosphingobium nitrogenifigens DSM 19370] gi|326206466|gb|EGD57301.1| type IV prepilin peptidase, cpaA [Novosphingobium nitrogenifigens DSM 19370] Length = 161 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 19/104 (18%) Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS--FLSFLFFVAILGGI 115 +AL L + + F + FA MGGGDVKLLT+ A+W P FL L +A+ GG+ Sbjct: 58 VALQLALAVGTFAVLAGLFALRAMGGGDVKLLTALALWL---PVVLFLRLLLIMALAGGL 114 Query: 116 LSVFILTVRMITNHIPIFGMF-VPKSFLMKNKIPYGIAISMGGL 158 L++ + GM+ V + + +IPYG+AI+ GL Sbjct: 115 LTI-------------VLGMWHVTRRRKNRLQIPYGVAIAGAGL 145 >gi|326797325|ref|YP_004315145.1| peptidase A24A prepilin type IV [Marinomonas mediterranea MMB-1] gi|326548089|gb|ADZ93309.1| peptidase A24A prepilin type IV [Marinomonas mediterranea MMB-1] Length = 182 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 26/166 (15%) Query: 16 PFCLVFAAL----SDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIAL-----HLLV 64 P L FA+L +DLF I NR+ +++L +L++A L+ D AL + + Sbjct: 7 PVILTFASLWVIVTDLFYRRIHNRLVLMLLVLWLVSAALSLITSDENRSALLADFGYTSL 66 Query: 65 GLI-VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 G + V ++ FC F MG GDVKL++ +W G L+FL A+ GG+L++F+ + Sbjct: 67 GAVGVLLVGFCLFLVGQMGAGDVKLMSILCLWVG-VEQQLTFLVVTALAGGVLALFLPFI 125 Query: 124 RMI-----------TNHIPIFGMFVPKSFLMK--NKIPYGIAISMG 156 +I + P F + P +F + +PYG+AIS+G Sbjct: 126 SLIELAGAKAILQLSERYPSFKIPAPIAFSREGVKGLPYGLAISVG 171 >gi|227818613|ref|YP_002822584.1| CpaA2 pilus assembly protein [Sinorhizobium fredii NGR234] gi|227337612|gb|ACP21831.1| CpaA2 pilus assembly protein [Sinorhizobium fredii NGR234] Length = 170 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 6/157 (3%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 + +A + D+ + I NR+ +L +F + A L G+D +I +LV V F FFA Sbjct: 17 TMTYAGIKDVMTMTISNRLVGFLLVAFAVLAPLAGVDLPMIWSSILVASAVLAFTFTFFA 76 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF---G 134 +GGGD KLL +W G L F+ ++LG +L++ ++ R + +P+ Sbjct: 77 LGWIGGGDAKLLPVAVLWLG-AGLALPFVVCASVLGAVLTLSLMQFRKMP--LPVLLQKR 133 Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 + + + IPYG A++ L+ P+S+ F L Sbjct: 134 AWSSRLHTPQTGIPYGAAMAPAALLLLPESHWFAALL 170 >gi|16263310|ref|NP_436103.1| CpaA2 pilus assembly protein [Sinorhizobium meliloti 1021] gi|14523989|gb|AAK65515.1| CpaA2 prepilin peptidase [Sinorhizobium meliloti 1021] Length = 170 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 FL+ + +A + D+ + I NRV + ++ +F + A G++ + ++V V Sbjct: 11 FLLFAGAMTYAGIRDVATMTISNRVVVFLVIAFAILAPAAGLNLATVMSSVVVASAVLAC 70 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 F FA +GGGD KLL +W G L F+ + +++G L+V +L +R + + Sbjct: 71 TFVLFAAGWIGGGDAKLLPVAVLWLG-ADLALPFILYTSVIGAALTVGLLQLRRVPLPLA 129 Query: 132 IFGMFVPKSFLMKNK-IPYG 150 + K L + IPYG Sbjct: 130 LKKNAWAKRLLDRETGIPYG 149 >gi|36958869|gb|AAQ87294.1| CpaA [Sinorhizobium fredii NGR234] Length = 194 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 6/153 (3%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 + +A + D+ + I NR+ +L +F + A L G+D +I +LV V F FFA Sbjct: 41 TMTYAGIKDVMTMTISNRLVGFLLVAFAVLAPLAGVDLPMIWSSILVASAVLAFTFTFFA 100 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF---G 134 +GGGD KLL +W G L F+ ++LG +L++ ++ R + +P+ Sbjct: 101 LGWIGGGDAKLLPVAVLWLG-AGLALPFVVCASVLGAVLTLSLMQFRKMP--LPVLLQKR 157 Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167 + + + IPYG A++ L+ P+S+ F Sbjct: 158 AWSSRLHTPQTGIPYGAAMAPAALLLLPESHWF 190 >gi|251789644|ref|YP_003004365.1| peptidase A24A prepilin type IV [Dickeya zeae Ech1591] gi|247538265|gb|ACT06886.1| peptidase A24A prepilin type IV [Dickeya zeae Ech1591] Length = 185 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 82/172 (47%), Gaps = 25/172 (14%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-----TAFLLGMDYELIA-- 59 V SA L+ CLV+ SDL IPNR + +L +L TA + G L Sbjct: 7 VQSAYNLLLVVCLVWCIGSDLLLRRIPNRAVLALLLGWLALSALATAGVTGPLPRLSGSL 66 Query: 60 LHLLVG-LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS- 117 L L G L+VF++ F F +G GDVKL++ +W G+ +SF+ AI GGIL+ Sbjct: 67 LQALPGALLVFVVGFLLFLTGRLGAGDVKLMSVLCLWVGYGHQ-ISFVMVTAIAGGILAL 125 Query: 118 -----------VFILTVRMITNHIPIFGMFVPK--SFLMKNKIPYGIAISMG 156 V +L RM NH+ + P S + IPYGIAI+ G Sbjct: 126 SLPLLNTCSTGVALLIERM--NHLLKINITPPPMLSAELSQGIPYGIAIAFG 175 >gi|167836691|ref|ZP_02463574.1| peptidase A24A, prepilin type IV [Burkholderia thailandensis MSMB43] Length = 166 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 2/136 (1%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82 A+SDL +PN + + + AFL G +A H + G I F + + F + Sbjct: 17 AVSDLRFRRLPNLSVAALAALYCVHAFLAGSHAPELAAHAVAGGIAFAVAAVMWRFGWIA 76 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142 GGD K L + W+ F V++ G ++ + +LT + + +++ S Sbjct: 77 GGDAK-LAAVVFWWAGLAHAAGVFFTVSVCGLVIGLAVLTAGAMLRRVAHAPLWL-TSLA 134 Query: 143 MKNKIPYGIAISMGGL 158 +PYGIA+++GGL Sbjct: 135 PSRGVPYGIALALGGL 150 >gi|150377242|ref|YP_001313837.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419] gi|150031789|gb|ABR63904.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419] Length = 170 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 2/133 (1%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 + +A + D+ + I NR+ + ++ +F + A +G+ ++ I ++V +V F FA Sbjct: 18 MTYAGIRDVATMTISNRLVVFLVIAFAVLAPAVGLSFDTITSSIVVASVVLACTFVLFAA 77 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 +GGGD KLL +W G L F+ + +++G L++ +L +R + + Sbjct: 78 GWIGGGDAKLLPVAVLWLG-ADLALPFVLYTSVIGAALTLGLLQLRRAPLPLVLKKNAWS 136 Query: 139 KSFLMKNK-IPYG 150 K L + IPYG Sbjct: 137 KRLLDRETGIPYG 149 >gi|154244239|ref|YP_001415197.1| peptidase A24A prepilin type IV [Xanthobacter autotrophicus Py2] gi|154158324|gb|ABS65540.1| peptidase A24A prepilin type IV [Xanthobacter autotrophicus Py2] Length = 158 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 11/144 (7%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +D+ +IPN V +L F A L + ++L LLV + V + F FA N++G G Sbjct: 22 TDIARRIIPNTVIAALLIGFATLAILTPLPD--LSLRLLVAVAVTALGFSLFAENVVGAG 79 Query: 85 DVKLLTSTAVWFGWTPSFLS-FLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 D KL +W P+ L F+ ++GG+L++ L + + + + + VP Sbjct: 80 DAKLAGVLMLWT--EPAQLPLFVLACGLIGGVLTLAALAMHRPADRL-VGTIAVP----- 131 Query: 144 KNKIPYGIAISMGGLISYPDSYLF 167 IPYG+A++ GL+ +P S L Sbjct: 132 GQTIPYGVALAGAGLLLHPYSSLL 155 >gi|332162952|ref|YP_004299529.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604225|emb|CBY25723.1| type IV prepilin peptidase TadV/CpaA [Yersinia enterocolitica subsp. palearctica Y11] gi|325667182|gb|ADZ43826.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862297|emb|CBX72458.1| hypothetical protein YEW_HH31900 [Yersinia enterocolitica W22703] Length = 128 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 24/145 (16%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG--MDYELIALHLLVGLIVFIICFCFF 76 L+F SD+ I N+ I + + A LG M++ A+++++ +I + F Sbjct: 4 LLFVCYSDIRYRTISNKFII----TIAINAVALGFTMNH---AINIVIPFSALLIGYSLF 56 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 F+++GGGDVKL+T + S L F+ + A++GG+ + I GM Sbjct: 57 HFHLIGGGDVKLITVLLLALTTAKS-LDFILYTAMMGGV--------------VMIIGML 101 Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161 V + + + +PY +AIS G L+S+ Sbjct: 102 VNREDIQQRGVPYAVAISAGFLLSF 126 >gi|238789146|ref|ZP_04632934.1| hypothetical protein yfred0001_29860 [Yersinia frederiksenii ATCC 33641] gi|238722678|gb|EEQ14330.1| hypothetical protein yfred0001_29860 [Yersinia frederiksenii ATCC 33641] Length = 127 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 20/136 (14%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 SD+ + NR I + L LG+ +++++ L ++ + F FN +GGG Sbjct: 9 SDILHRTVSNRFII----TITLNTIALGLTIHN-TVNIIIPLCSLLVGYIIFHFNFIGGG 63 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVKL+T+ S L F+ + AI+GG+ ++T+ M+ N + I K Sbjct: 64 DVKLITALLFSLNLQES-LDFIIYTAIMGGV----VMTIGMLINQVDI----------KK 108 Query: 145 NKIPYGIAISMGGLIS 160 +PY +AIS G L+S Sbjct: 109 RGVPYAVAISGGFLLS 124 >gi|307304371|ref|ZP_07584122.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C] gi|306902573|gb|EFN33167.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C] Length = 170 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 FL+ + +A + D+ + I NR+ + ++ +F + A G++ + ++V V Sbjct: 11 FLLFAGAMTYAGIRDVATMTISNRLVVFLVIAFAILAPAAGLNLATVMSSVVVASAVLAC 70 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 F FA +GGGD KLL +W G L F+ + +++G L+V +L +R + + Sbjct: 71 TFVLFAAGWIGGGDAKLLPVAVLWLG-ADLALPFILYTSVIGAALTVGLLQLRRVPLPLA 129 Query: 132 IFGMFVPKSFLMKNK-IPYG 150 + K L + IPYG Sbjct: 130 LKKNAWAKRLLDRETGIPYG 149 >gi|255597443|ref|XP_002536775.1| conserved hypothetical protein [Ricinus communis] gi|223518589|gb|EEF25609.1| conserved hypothetical protein [Ricinus communis] Length = 169 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 3/136 (2%) Query: 23 ALSDLFSAMIPNRVSIVMLGS-FLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81 A+ D+ + +P R S++ LG F A ++ + H+ + +VF IC FA M Sbjct: 20 AVVDVRARRLPTR-SVLALGLLFFADALVVHRSASDVLSHVALAGVVFAICAVLFALGWM 78 Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141 GGGD KL + +W G P L +++ G ++++ L + + + F Sbjct: 79 GGGDAKLAAAIFLWAG-LPLSWPALVLISVSGTVVALVSLATQRLDPQHRARAVRALAMF 137 Query: 142 LMKNKIPYGIAISMGG 157 +PYG+A++ GG Sbjct: 138 SGTRGVPYGVALAAGG 153 >gi|307318078|ref|ZP_07597514.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83] gi|306896119|gb|EFN26869.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83] Length = 170 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 2/140 (1%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 FL+ + +A + D+ + I NR+ + ++ +F + A G+ + ++V V Sbjct: 11 FLLFAGAMTYAGIRDVATMTISNRLVVFLVIAFAILAPAAGLSLATVMSSVVVASAVLAC 70 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 F FA +GGGD KLL +W G L F+ + +++G L+V +L +R + + Sbjct: 71 TFVLFAAGWIGGGDAKLLPVAVLWLG-ADLALPFILYTSVIGAALTVGLLQLRRVPLPLA 129 Query: 132 IFGMFVPKSFLMKNK-IPYG 150 + K L + IPYG Sbjct: 130 LKKNAWAKRLLDRETGIPYG 149 >gi|123443819|ref|YP_001007790.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090780|emb|CAL13662.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 140 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 27/163 (16%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG--MDYELI 58 M ++ SA+ ++ L+F SD+ I N+ I + + A LG M++ Sbjct: 1 MDTLNILISALLMLQ---LLFVCYSDIRYRTISNKFII----TIAINALALGFTMNH--- 50 Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 +++++ +I + F F+++GGGDVKL+T + S L F+ + A++GG+ Sbjct: 51 TVNIVIPFSALLIGYSLFHFHLIGGGDVKLITVLLLALTTAKS-LDFILYTAMMGGV--- 106 Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + I GM V + + + +PY +AIS G L+S+ Sbjct: 107 -----------VMIIGMLVNREDIQQRGVPYAVAISAGFLLSF 138 >gi|220923696|ref|YP_002498998.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS 2060] gi|219948303|gb|ACL58695.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS 2060] Length = 171 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 81/152 (53%), Gaps = 6/152 (3%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 F +++A ++DL + I N + +V+L + + A L G I + V + F FF Sbjct: 17 FTVIYAGITDLTTMKIRNGLVLVLLLGYGILAPLAGFSLPQIGWSAALSFGVLLAAFIFF 76 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF--- 133 AF +GGGD K +T +W G S + +L + A+LGG+ ++ +L R T +P F Sbjct: 77 AFGWIGGGDAKFAAATVLWLGIDHSPV-YLVYTALLGGLFTLLLLQFR--TRALPAFLNG 133 Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165 ++ + + +PYG+A+++ L+ +P ++ Sbjct: 134 STWLVRLHSPTSGVPYGVAMALAALVVFPQTH 165 >gi|85707704|ref|ZP_01038770.1| putative type IV prepilin peptidase, cpaA [Erythrobacter sp. NAP1] gi|85689238|gb|EAQ29241.1| putative type IV prepilin peptidase, cpaA [Erythrobacter sp. NAP1] Length = 165 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 37/155 (23%) Query: 25 SDLFSAMIPNRVSIVML----------GSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 +D+ S I N ++I + GS L + + + L+ +LVG + + Sbjct: 24 TDIRSRTISNWLNIAIAAGAPVFWWASGSSLWPDVVWQIGFALVVCAILVG-----VAYI 78 Query: 75 FFAFNI--MGGGDVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSV-FILTVRMITNHI 130 + NI +GGGD+KLL + A+WF TP S+L L+++A+ GG++++ F+L + Sbjct: 79 GYRLNIVILGGGDIKLLGALALWF--TPMSYLGMLWYMALCGGVMAILFVLRL------- 129 Query: 131 PIFGMFV-PKSFLMKNKIPYGIAISMGG-LISYPD 163 MF+ PK+ + +PYG+AI+ G L+ YP Sbjct: 130 ----MFLRPKT---RGVLPYGVAIAGGALLVLYPK 157 >gi|51597668|ref|YP_071859.1| hypothetical protein YPTB3370 [Yersinia pseudotuberculosis IP 32953] gi|51590950|emb|CAH22608.1| Putative membrane protein [Yersinia pseudotuberculosis IP 32953] Length = 140 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 28/142 (19%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC----FC 74 L+F SD+ +I N+ I S A +L + +H V +I+ I+ + Sbjct: 16 LLFVCYSDIRHRIISNKFVI----SIAFNAIILSL-----VMHHTVSIIIPIVALFIGYI 66 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 F FN+MGGGDVKL+T+ + S L+F+ + A++GGI+ V G Sbjct: 67 IFHFNVMGGGDVKLITALLLALTAEQS-LNFIIYTAVMGGIVMV--------------VG 111 Query: 135 MFVPKSFLMKNKIPYGIAISMG 156 + + + + K +PY +AI+ G Sbjct: 112 LLINRVDIQKRGVPYAVAITAG 133 >gi|238759120|ref|ZP_04620289.1| hypothetical protein yaldo0001_3380 [Yersinia aldovae ATCC 35236] gi|238702668|gb|EEP95216.1| hypothetical protein yaldo0001_3380 [Yersinia aldovae ATCC 35236] Length = 130 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 15/87 (17%) Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 +I + F ++GGGDVKL+T + T S L F+ + AI+GG Sbjct: 52 LIGYIIFHLKLIGGGDVKLITVLLLALTATQS-LDFILYTAIMGG--------------A 96 Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMG 156 + I G+FV K + + +PY +AIS+G Sbjct: 97 VMIIGLFVNKKDIQQRGVPYAVAISLG 123 >gi|238750894|ref|ZP_04612391.1| hypothetical protein yrohd0001_16460 [Yersinia rohdei ATCC 43380] gi|238710808|gb|EEQ03029.1| hypothetical protein yrohd0001_16460 [Yersinia rohdei ATCC 43380] Length = 140 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 20/136 (14%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 SD+ +I N+ + + + L+ +F+ Y +++ ++ LI + + F FN +GGG Sbjct: 22 SDIRYRIISNKFVVTIAITALVLSFI---TYNTVSI--VIPLIALLTGYIIFHFNFIGGG 76 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVKL+ + S L+F+ + AI+GG+ + I GM + + + + Sbjct: 77 DVKLIAVLLLTLNSGQS-LNFILYTAIMGGV--------------VMIIGMLINRDDIQQ 121 Query: 145 NKIPYGIAISMGGLIS 160 +PY +AIS G L+S Sbjct: 122 RGVPYAVAISGGFLLS 137 >gi|209515949|ref|ZP_03264810.1| peptidase A24A prepilin type IV [Burkholderia sp. H160] gi|209503607|gb|EEA03602.1| peptidase A24A prepilin type IV [Burkholderia sp. H160] Length = 161 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 12/149 (8%) Query: 18 CLVFAALS--DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 CLV A+L+ D+ S +P R +++ + + A + G+ +A HL I F + Sbjct: 10 CLVLASLAVGDIRSRRLPTRAVLLVACLYGVDAAVTGVSIVSLAAHLGAAAIGFALFALL 69 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFL----SFLFFVAILGGILSVFILTVRMITNHIP 131 F MGGGDVKL + +W G P++ S + F ++ G++++ + R H Sbjct: 70 FRCGWMGGGDVKLAAAVFLWAG--PAYAWPVFSIVSFCGLVLGLMALIMGLFRRHATHTF 127 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 M +PYG+A+++GG+ + Sbjct: 128 RASM----QLASPRGVPYGVALALGGIAA 152 >gi|153834037|ref|ZP_01986704.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio harveyi HY01] gi|148869592|gb|EDL68582.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio harveyi HY01] Length = 162 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%) Query: 19 LVFAALSDLFSAMIPNRVSIVML----GSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 L+ +SD IPN+ +++L + A G+D HL GL+ F CF Sbjct: 11 LIAIGVSDAQKHRIPNKAVLLLLTAVTANLAFNANSDGLD------HLYGGLVTFAACFV 64 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 + F +M GGDVKLL W G + + + + GG++ +F L + + ++ + Sbjct: 65 LYLFKVMAGGDVKLLAVIGAWLGLS-NIGEATVGIILAGGVVGLFYLALYVCSSTTSLTE 123 Query: 135 MFVPKSFLMKNKIP 148 F K + ++ P Sbjct: 124 QF--KGYCLEKVTP 135 >gi|119566855|gb|ABL84263.1| TadV [Yersinia ruckeri] Length = 140 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 22/137 (16%) Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80 +A +D+ +I N + + S L TA Y ++ L+ LI+ I F F F + Sbjct: 18 WACYTDIRYRIIGNDLIV----SMLFTAMAFSFSYRG-SISLIFPLIILTIGFIIFIFGL 72 Query: 81 MGGGDVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139 +GGGDVK++T A TP F+ + AI+GG+ + I G+ + + Sbjct: 73 IGGGDVKMITVLACTL--TPMQTYHFITYTAIMGGV--------------VMIIGLVISR 116 Query: 140 SFLMKNKIPYGIAISMG 156 S + + +PYG+AI+ G Sbjct: 117 SDIKERGVPYGVAIASG 133 >gi|27378602|ref|NP_770131.1| hypothetical protein blr3491 [Bradyrhizobium japonicum USDA 110] gi|27351750|dbj|BAC48756.1| blr3491 [Bradyrhizobium japonicum USDA 110] Length = 171 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 31/156 (19%) Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL-----IALHLLVGLIVFIICFCF 75 + A D+ + +I N + +V+ AFL G+ +L IA L+ I+F++ F Sbjct: 21 YVATIDVATRLIRNEICLVL-------AFL-GIVTQLPNAIQIAESLIAAAILFLLLFVL 72 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 + +GGGDVKLLT+ A+ F T + L A+ GGIL++ L +R+ +P + Sbjct: 73 YTRGGIGGGDVKLLTALAIGFPLT-GVIQLLTVTALAGGILALVHLLMRL----LPYPRL 127 Query: 136 FVPKSFLMKN-------------KIPYGIAISMGGL 158 S LM+ +PYG+A++ GG+ Sbjct: 128 APAGSSLMRRVYAVERWRHLRHAPLPYGVAVACGGI 163 >gi|238782883|ref|ZP_04626912.1| hypothetical protein yberc0001_35150 [Yersinia bercovieri ATCC 43970] gi|238716306|gb|EEQ08289.1| hypothetical protein yberc0001_35150 [Yersinia bercovieri ATCC 43970] Length = 140 Score = 47.4 bits (111), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 20/136 (14%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 SD+ +I NR + + + L F ++ + +++ L + + F F ++GGG Sbjct: 22 SDIRHRIISNRFIMTIAINTLALGF-----FQYHRVSIIIPLFALVTGYILFNFKLIGGG 76 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVKL+T + S L+F+ + AI+GG+ + I GM + ++ + + Sbjct: 77 DVKLITVLLLALTAEQS-LNFILYTAIMGGV--------------VMIIGMLINRADIQQ 121 Query: 145 NKIPYGIAISMGGLIS 160 +PY +AI+ G L+S Sbjct: 122 RGVPYAVAITGGFLLS 137 >gi|52425836|ref|YP_088973.1| hypothetical protein MS1781 [Mannheimia succiniciproducens MBEL55E] gi|52307888|gb|AAU38388.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 166 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 24/148 (16%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 ++LI L++ + +D+ S +I NRV I + + + ++L YE + +L G I Sbjct: 31 LYLIAVLQLIYLSWTDIKSRIIGNRVIISLFFTMVALSWL---KYE--QVFVLQGAIGLA 85 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTP--SFLSFLFFVAILGGILSVFILTVRMITN 128 +CF F +MGGGD KL+ AV P +SF F A+ G +L Sbjct: 86 VCFILFMLKVMGGGDAKLI---AVLMLSIPPAQLISFFFLTAVFGLLL------------ 130 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMG 156 I G + + + +PYG+AIS G Sbjct: 131 --IIIGWLFFRQSIKQKGLPYGVAISSG 156 >gi|103486619|ref|YP_616180.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256] gi|98976696|gb|ABF52847.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256] Length = 162 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 20/161 (12%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--GMD-YELIALHLLVGLIVFIICFCF 75 ++ AA+SD+ S I N +++ M + L F + G+ + + + L+VF++ Sbjct: 18 MIAAAVSDIRSRTISNELNVAM--AILAVPFWVVSGLTLWPDVPIQFGAALLVFLVFALL 75 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS-VFILTVRMITNHIPIFG 134 FA MGGGDVK++ + +W P L L +AI GGILS + ++ +++ + P+ Sbjct: 76 FAIGAMGGGDVKMICAVMLWIP-LPLVLPMLMVMAIGGGILSLIMLIHMKLRPSERPV-- 132 Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 ++PYG+AI+ GL + YL + +GLS Sbjct: 133 -----------EVPYGVAIAAAGLWALHQHYLNQFQAIGLS 162 >gi|186896806|ref|YP_001873918.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis PB1/+] gi|186699832|gb|ACC90461.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis PB1/+] Length = 140 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 15/86 (17%) Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 I + F FN+MGGGDVKL+T+ + S L+F+ + A++GGI + Sbjct: 63 IGYIIFHFNVMGGGDVKLITALLLALTAEQS-LNFIIYTAVMGGI--------------V 107 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMG 156 + G+ + + + K +PY +AI+ G Sbjct: 108 MVVGLLINRVDIQKRGVPYAVAITAG 133 >gi|110632967|ref|YP_673175.1| peptidase A24A, prepilin type IV [Mesorhizobium sp. BNC1] gi|110283951|gb|ABG62010.1| peptidase A24A, prepilin type IV [Chelativorans sp. BNC1] Length = 170 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 56/107 (52%), Gaps = 1/107 (0%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 +++A + D+ + I NR+ +++ ++++ A L G+ + + ++ F FA Sbjct: 17 TMIYAGIKDVATMTITNRLVLLLAAAYVVLAPLAGLGVDEMLAAAAAASLMLAGTFLLFA 76 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 +GGGD KL +W G L ++F+V++ G +L++ ++ R Sbjct: 77 LGWIGGGDAKLAAVAVLWLG-ADQTLPYIFYVSVAGALLTLALIQFR 122 >gi|238755448|ref|ZP_04616788.1| Flp pilus assembly protein, protease CpaA [Yersinia ruckeri ATCC 29473] gi|238706289|gb|EEP98666.1| Flp pilus assembly protein, protease CpaA [Yersinia ruckeri ATCC 29473] Length = 104 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 15/98 (15%) Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 ++ L+ LI+ I F F F ++GGGDVK++T A ++ F+ + AI+GG+ Sbjct: 15 SISLIFPLIILTIGFIIFIFGLIGGGDVKMITVLACTLTPMQTY-HFITYTAIMGGV--- 70 Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156 + I G+ + +S + + +PYG+AI+ G Sbjct: 71 -----------VMIIGLVISRSDIKERGVPYGVAIASG 97 >gi|144898051|emb|CAM74915.1| membrane protein [Magnetospirillum gryphiswaldense MSR-1] Length = 155 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 17/141 (12%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 LV A++SD+ + I +R S+ ++ +F+L G + +A H+ + VF FA Sbjct: 19 ALVDASISDVRALRIADRDSVAVVAAFILLGAN-GWPVQELAWHVAAAVAVFAAGAALFA 77 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 + GGGDVKL + A+ G+ FLF +A++GGI+++ +L +R Sbjct: 78 LGVWGGGDVKLCAALALLTGFV-GLPRFLFVMAMVGGIVALAVLALR------------- 123 Query: 138 PKSFLMKNKIPYGIAISMGGL 158 ++PYG+AI+ G+ Sbjct: 124 --GRAAGGQVPYGLAIAAAGM 142 >gi|328474267|gb|EGF45072.1| hypothetical protein VP10329_16210 [Vibrio parahaemolyticus 10329] Length = 162 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 11/118 (9%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L+ +SD IPN+ +++L +TA +L + H GL+ F +CF + Sbjct: 11 LIAIGVSDAQKHRIPNKAVLLLL--VAVTANVLYSPSVSLLDHAYGGLVAFAVCFALYLV 68 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI----LGGILSVFILTVRMITNHIPI 132 M GGDVKLL W G LS L+ +I GGI+ +F L + + + + + Sbjct: 69 KAMAGGDVKLLAVIGTWLG-----LSNLWEASIGIILAGGIVGIFYLMLHIASTSVAL 121 >gi|238796998|ref|ZP_04640502.1| hypothetical protein ymoll0001_34110 [Yersinia mollaretii ATCC 43969] gi|238719258|gb|EEQ11070.1| hypothetical protein ymoll0001_34110 [Yersinia mollaretii ATCC 43969] Length = 124 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 15/84 (17%) Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 + F FN++GGGDVKL+T + S L F+ + AI+GG+ + I Sbjct: 49 YIIFHFNLIGGGDVKLITVLLLTLTPGQS-LDFILYTAIMGGV--------------VMI 93 Query: 133 FGMFVPKSFLMKNKIPYGIAISMG 156 GM + +S + + +PY +AIS+G Sbjct: 94 IGMLINRSDIQQRGVPYAVAISIG 117 >gi|28899196|ref|NP_798801.1| hypothetical protein VP2422 [Vibrio parahaemolyticus RIMD 2210633] gi|260361566|ref|ZP_05774593.1| peptidase, A24 family [Vibrio parahaemolyticus K5030] gi|260876723|ref|ZP_05889078.1| peptidase, A24 family [Vibrio parahaemolyticus AN-5034] gi|260898198|ref|ZP_05906694.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio parahaemolyticus Peru-466] gi|260900394|ref|ZP_05908789.1| peptidase, A24 family [Vibrio parahaemolyticus AQ4037] gi|28807420|dbj|BAC60685.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308089056|gb|EFO38751.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio parahaemolyticus Peru-466] gi|308091369|gb|EFO41064.1| peptidase, A24 family [Vibrio parahaemolyticus AN-5034] gi|308109134|gb|EFO46674.1| peptidase, A24 family [Vibrio parahaemolyticus AQ4037] gi|308114018|gb|EFO51558.1| peptidase, A24 family [Vibrio parahaemolyticus K5030] Length = 162 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 11/118 (9%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L+ +SD IPN+ +++L +TA +L + H GL+ F +CF + Sbjct: 11 LIAIGVSDAQKHRIPNKAVLLLL--VAVTANVLYSPSVSLLDHAYGGLVAFAVCFALYLV 68 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI----LGGILSVFILTVRMITNHIPI 132 M GGDVKLL W G LS L+ +I GGI+ +F L + + + + + Sbjct: 69 KAMAGGDVKLLAVIGAWLG-----LSNLWEASIGIILAGGIVGIFYLMLHIASTSVAL 121 >gi|153836819|ref|ZP_01989486.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio parahaemolyticus AQ3810] gi|149749965|gb|EDM60710.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio parahaemolyticus AQ3810] Length = 162 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 11/118 (9%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L+ +SD IPN+ +++L +TA +L + H GL+ F +CF + Sbjct: 11 LIAIGVSDAQKHRIPNKAVLLLL--VAVTANVLYSPSVSLLDHAYGGLVAFAVCFALYLV 68 Query: 79 NIMGGGDVKLLTSTAVWFG----WTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 M GGDVKLL W G W S + + GGI+ +F L + + + + + Sbjct: 69 KAMAGGDVKLLAVIGAWLGMSNLWEAS-----IGIILAGGIVGIFYLMLHIASTSVAL 121 >gi|323491529|ref|ZP_08096708.1| hypothetical protein VIBR0546_18006 [Vibrio brasiliensis LMG 20546] gi|323314105|gb|EGA67190.1| hypothetical protein VIBR0546_18006 [Vibrio brasiliensis LMG 20546] Length = 172 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 23 ALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81 A+SD IPN + + V+L SF+ AF++ DY + + G+ FI C + +M Sbjct: 13 AVSDAKEHRIPNYLLLLVILISFINKAFVI-QDYNFLLWSFVSGITCFIAALCLYFLKVM 71 Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 GDVKLL W G + L ++++AI ++ F +R+ + Sbjct: 72 APGDVKLLGVIGFWLG-SEHILGAVYWIAISSVVIGGFYALLRLAES 117 >gi|148557763|ref|YP_001265345.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1] gi|148502953|gb|ABQ71207.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1] Length = 157 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 17/103 (16%) Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTP--SFLSFLFFVAILGGI 115 +AL + V L +F + F +MGGGDVK++ + A+W P + + L +A+ GG Sbjct: 57 VALRIGVALAIFALFAVLFMLRMMGGGDVKMIGALALWL---PFHALIVMLTVMALAGGA 113 Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 +++ +L I + P + + ++PYG+AI++GGL Sbjct: 114 ITLGLL----------IRQRWRPNAD--RPEVPYGVAIAIGGL 144 >gi|159043670|ref|YP_001532464.1| peptidase A24A prepilin type IV [Dinoroseobacter shibae DFL 12] gi|157911430|gb|ABV92863.1| peptidase A24A prepilin type IV [Dinoroseobacter shibae DFL 12] Length = 169 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 17/162 (10%) Query: 7 VFSAVFLIP---PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL--GMDYELIALH 61 V A++ +P P CL F A SD+ IPNR +++LG F + L +DY +H Sbjct: 5 VSQALWFLPFILPICL-FVAWSDMKFMRIPNRSVLLLLGMFAIVGLLALPLLDYAWRWVH 63 Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 ++ V + F + ++G GD K + A + + L + F AIL G + L Sbjct: 64 VIA---VLAVGFVMSSAGLVGAGDAKFAAAMAPFVALQDALLVVVLFSAILLGAFATHRL 120 Query: 122 TVRMITNHIPIFGMFVP--KSFLMKNKIPYGIAISMGGLISY 161 RM +P P +S+ K P G+A+S G LI Y Sbjct: 121 A-RM----LPAVRRLTPDWESWTRKRDFPMGLALS-GTLIFY 156 >gi|147677479|ref|YP_001211694.1| type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Pelotomaculum thermopropionicum SI] gi|146273576|dbj|BAF59325.1| type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Pelotomaculum thermopropionicum SI] Length = 250 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 16/147 (10%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L+ AA D +IP++++++ + + L A+L+ D L + ++ + Sbjct: 109 LITAAFIDFKHQIIPDKLAVLGIIAGLPLAWLVSADRLKSGLLGFLAAGAIMLAIALASR 168 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 MGGGDVKL ++ GW P+ L LF + GG + +F+L + Sbjct: 169 GGMGGGDVKLSAVMGLFLGW-PAVLVALFLAFLAGGAVGLFLLATGRKSR---------- 217 Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSY 165 K+ +P+G +++GG++S + Y Sbjct: 218 -----KDAVPFGPYLALGGVVSAFEGY 239 >gi|329890998|ref|ZP_08269341.1| peptidase A24A prepilin type IV [Brevundimonas diminuta ATCC 11568] gi|328846299|gb|EGF95863.1| peptidase A24A prepilin type IV [Brevundimonas diminuta ATCC 11568] Length = 73 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%) Query: 105 FLFFVAILGGILSVFILTVRMITNHIPIFGMFVP----KSFLMKNKIPYGIAISMGGLIS 160 F+ + A+ GG + ++T R +H+P F P + K IPYG+AI++G L++ Sbjct: 4 FILYTALAGGGFCLLLMTAR---SHLPFFAQTGPGWVMRLMQPKGDIPYGVAIAIGALLA 60 Query: 161 YPDSYLFKVALMG 173 YP S L + G Sbjct: 61 YPSSPLMTAYITG 73 >gi|218509312|ref|ZP_03507190.1| prepilin peptidase protein [Rhizobium etli Brasil 5] Length = 51 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 32/49 (65%) Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 +N I G+ +P S L+ KIPYGIAI++GG +++P S +F AL L Sbjct: 3 SNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESLK 51 >gi|126735711|ref|ZP_01751456.1| hypothetical protein RCCS2_17586 [Roseobacter sp. CCS2] gi|126714898|gb|EBA11764.1| hypothetical protein RCCS2_17586 [Roseobacter sp. CCS2] Length = 152 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 13/146 (8%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV--FIICFCF 75 LV A + ++ + IPN +++V F L A LL M + L+ +GL V FI Sbjct: 13 VLVVAMVLEIKTGRIPNWLTLV---PFALFAVLLVMVEDRTPLYWQMGLAVGTFIFGLVL 69 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 FA G G VKLL TA++ + +F +FL F+AI G S+ I+ +R +FG Sbjct: 70 FAIGGSGAGAVKLLAGTALFVPFENAFFTFLLFLAIFFGS-SIIIVALR------KVFGS 122 Query: 136 FVPKSFLMKNKI-PYGIAISMGGLIS 160 +M N + P +I M GL+ Sbjct: 123 EDSSWHVMANAVLPLSFSIGMAGLLG 148 >gi|326405524|ref|YP_004285606.1| putative peptidase A24A [Acidiphilium multivorum AIU301] gi|325052386|dbj|BAJ82724.1| putative peptidase A24A [Acidiphilium multivorum AIU301] Length = 167 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 7/109 (6%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFA 77 L FA DL IP+ V M L FL D ++ + + L V ++F + F + Sbjct: 13 LAFACWQDLLLRRIPDGVPAAM---ALAGIFLRLRDGFQPLGVSLAVAAVLFAVLFAVYL 69 Query: 78 FNIMGGGDVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTVRM 125 +GGGDVKL+ + A G+ P + FLF + GGIL++ L +R+ Sbjct: 70 RRSIGGGDVKLIVALA--LGYGPLALAGFLFATVLAGGILALAYLALRV 116 >gi|171317757|ref|ZP_02906939.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5] gi|171097107|gb|EDT41960.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5] Length = 159 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 7/150 (4%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 V L F LV A DL + NR + +L+ A L+ A H+ + + Sbjct: 5 VQLAATFVLVSIAAQDLRERRVSNRAVLAFAMLYLVAAALVREGLAPFAGHVATAAAMLV 64 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + +GGGDVKL + +W G T + L L V G + +L I Sbjct: 65 VFGGLRHAGWLGGGDVKLAAAVFLWAGPTLA-LPVLTIVGASGAACGLAMLAAVARQRRI 123 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 P + +PYG+A+++GG+++ Sbjct: 124 ------APAHTMATRGVPYGVALALGGVLA 147 >gi|269962014|ref|ZP_06176369.1| hypothetical protein VME_27530 [Vibrio harveyi 1DA3] gi|269833337|gb|EEZ87441.1| hypothetical protein VME_27530 [Vibrio harveyi 1DA3] Length = 161 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 HL GL+ F +CF + +M GGDVKLL W G + + + + + GG++S+F Sbjct: 50 HLYGGLVAFAVCFVLYLCKVMAGGDVKLLAVLGAWIGLS-NLGAASTGIVLAGGVVSLFY 108 Query: 121 LTVRMITNHI 130 L + + ++ I Sbjct: 109 LALHIGSSTI 118 >gi|54309658|ref|YP_130678.1| hypothetical protein PBPRA2494 [Photobacterium profundum SS9] gi|46914096|emb|CAG20876.1| Hypothetical membrane protein [Photobacterium profundum SS9] Length = 145 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 12/130 (9%) Query: 28 FSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVK 87 +S + R+S ++ + + L +A ++ +I+F+I F FNI+ GD K Sbjct: 17 YSDIRYRRISNIVCAAVFSLSLTLAFSQHQLADGIISSIIMFLISLLLFYFNIVAAGDGK 76 Query: 88 LLTSTAVWFGWTPSFLSFLFFVAILGGILSV-FILTVRMITNHIPIFGMFVPKSFLMKNK 146 L ++ AV +S L+F + GG+++V +++ ++I P K+ Sbjct: 77 LASAFAVALS-PQQLISALYFTLLFGGVVAVIYLIKYQLIQRRSP------EKA----RG 125 Query: 147 IPYGIAISMG 156 +PYG+AI+ G Sbjct: 126 LPYGVAIACG 135 >gi|297581606|ref|ZP_06943528.1| predicted protein [Vibrio cholerae RC385] gi|297534013|gb|EFH72852.1| predicted protein [Vibrio cholerae RC385] Length = 138 Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 9/100 (9%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 LV+ ALSDL +PN + +L A ++G L ++L+ ++V + F F Sbjct: 9 LVWVALSDLQQRKVPNI-------AVILFAVVVGAVTPLSQGNVLISVVVLSLGMLAFHF 61 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 + G GD KLL A +G + S +F A+ GG+LSV Sbjct: 62 RLFGAGDSKLLAVCA--YGAGDQWTSLIFITALFGGVLSV 99 >gi|158421905|ref|YP_001523197.1| prepilin peptidase [Azorhizobium caulinodans ORS 571] gi|158328794|dbj|BAF86279.1| prepilin peptidase [Azorhizobium caulinodans ORS 571] Length = 155 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 16/152 (10%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY-ELIALHLLVGLIVFIICFC 74 P LV A SDL IPN IV+L L A L + Y + + L L++ V + F Sbjct: 16 PVALVAALASDLSRRTIPN---IVVLALLLGFAALAFLGYVDDLPLRLVLAGAVLCVGFA 72 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 F+ +++G GD KL +TA+W T F +V +L G + ++ + G Sbjct: 73 LFSEDVIGAGDAKLAAATALWLDPT----QFPLYV-LLCGAMGALLVAAATVARQQGWGG 127 Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166 + +PYG+A++ GL +P S L Sbjct: 128 R-------LARGLPYGVALATAGLALFPYSSL 152 >gi|332188358|ref|ZP_08390083.1| type IV leader peptidase family protein [Sphingomonas sp. S17] gi|332011587|gb|EGI53667.1| type IV leader peptidase family protein [Sphingomonas sp. S17] Length = 161 Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 11/100 (11%) Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 L + V + +F++ F +MGGGDVK++ + A+W P + L ++I GG Sbjct: 60 LQIGVAIGLFLLFALAFRVGMMGGGDVKMIAALALWLPLGP-LMRMLLLMSIAGG----- 113 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 I+T+ M+ +H ++PYG+AI+M GL+ Sbjct: 114 IVTLAMLIDH-----RLRRSGSDGAIEVPYGVAIAMAGLL 148 >gi|32477846|ref|NP_870840.1| signal peptide [Rhodopirellula baltica SH 1] gi|32448403|emb|CAD77918.1| hypothetical protein-signal peptide and transmembrane prediction [Rhodopirellula baltica SH 1] Length = 141 Score = 42.4 bits (98), Expect = 0.026, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 2/99 (2%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 LV+A+L DL + IP+ +S V++G + + LLG I L G++ +I F F Sbjct: 13 LVWASLHDLRTREIPDWIS-VLIGVVAIVSSLLGWLGLSIVWVLAGGVVGLVIASALFRF 71 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117 +GGGD KL+ + A+ G L LF +AI GG+LS Sbjct: 72 AKLGGGDGKLIIALAMLVG-PVGILIVLFGMAITGGVLS 109 >gi|323700357|ref|ZP_08112269.1| peptidase A24A prepilin type IV [Desulfovibrio sp. ND132] gi|323460289|gb|EGB16154.1| peptidase A24A prepilin type IV [Desulfovibrio desulfuricans ND132] Length = 182 Score = 42.4 bits (98), Expect = 0.027, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 16/97 (16%) Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT------VRMITNHIPI 132 +MG GDVKL+ W G +F +FL F I GG+ ++ +L R++ N Sbjct: 72 GVMGAGDVKLMAGVGAWLGVEATFTAFL-FTCIAGGVYALAVLAFHREILKRVLRNITAT 130 Query: 133 FGMFVPKS------FLMKNKIP---YGIAISMGGLIS 160 F +F+ +N +P YG+AI++G +++ Sbjct: 131 FSVFMASRKFDFAPVTAENAMPRLCYGVAIAVGTVVA 167 >gi|148262015|ref|YP_001236142.1| peptidase A24A, prepilin type IV [Acidiphilium cryptum JF-5] gi|146403696|gb|ABQ32223.1| peptidase A24A, prepilin type IV [Acidiphilium cryptum JF-5] Length = 167 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 7/109 (6%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFA 77 L FA DL IP+ V M L FL D ++ + L V ++F + F + Sbjct: 13 LAFACWQDLLLRRIPDGVPAAMA---LAGIFLRLRDGFQPFGVSLAVAAVLFAVLFAVYL 69 Query: 78 FNIMGGGDVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTVRM 125 +GGGDVKL+ + A G+ P + FLF + GGIL++ L +R+ Sbjct: 70 RRSIGGGDVKLIVALA--LGYGPLALAGFLFATVLAGGILALAYLALRV 116 >gi|209546486|ref|YP_002278404.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537730|gb|ACI57664.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 178 Score = 42.0 bits (97), Expect = 0.033, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 14/142 (9%) Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV----------GLIVFI 70 +AA +D + IPN V + ++ ++L A + + E + L GL++F+ Sbjct: 18 YAAWTDFRTWKIPNTVVLALVTLYVLRAVAVILSSEDVGAALFASSGIGGDVGAGLLMFM 77 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI-LSVFILTVRMITNH 129 + +A + G GD KL ++ GW S L F FF+ +LG + L L V + H Sbjct: 78 LGVVLWALRLFGAGDAKLFLPIGLFVGWH-SMLPFSFFLLVLGIVTLLALRLPVPLPVAH 136 Query: 130 IPIFGMFVPKSFLMKNKIPYGI 151 + F K+PYG+ Sbjct: 137 LAFFMRI--AEIRASRKVPYGV 156 >gi|254255252|ref|ZP_04948568.1| Type II secretory pathway prepilin signal peptidase PulO [Burkholderia dolosa AUO158] gi|124900989|gb|EAY71739.1| Type II secretory pathway prepilin signal peptidase PulO [Burkholderia dolosa AUO158] Length = 200 Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 26/165 (15%) Query: 16 PFCL----VFAALSDLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-F 69 P C+ + AA +D+ S IPNRV ++ ++G+ + L G+ AL L G Sbjct: 32 PLCVTLLAIVAASTDIASRRIPNRVVAVGLVGALIAQCALHGIAAG--ALQWLAGAATGL 89 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVFILTVRMITN 128 + F+ M GDVKL+ + W G +F ++ FV LGGI ++ + +R Sbjct: 90 ALLLPFYLLRGMAAGDVKLMLAIGAWVGAEMTFYIALATFV--LGGIGAIVLALLRGRVR 147 Query: 129 H--IPIFGMFVPKSFLMKNK-------------IPYGIAISMGGL 158 + + M +SF + + +PYG+AI+ G L Sbjct: 148 DLCVNVCRMVARRSFALHGESADGSAPVASAGALPYGVAIAAGTL 192 >gi|116255767|ref|YP_771600.1| putative transmembrane pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260415|emb|CAK03519.1| putative transmembrane pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 187 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 20/155 (12%) Query: 18 CLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALH-LLVGLIVFIICFCF 75 C + AA+ D IPN V+ +LG F+L A G+ +A LL ++FII F Sbjct: 20 CTMTAAVLDHRHGHIPNAVTYPCLLGGFMLAAVSGGLAGIGLAFAGLLAAGLIFIIAF-- 77 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR----MITNHIP 131 A GGGDVKL+ + G P+ + + GG+++VF + R ++ + Sbjct: 78 -AAGSCGGGDVKLMAALGAILGLWPA-IDVTLASLMAGGVIAVFSMARRVQWSVLARTVG 135 Query: 132 IFGMFVPKSFL----------MKNKIPYGIAISMG 156 +F + +P F + + +G+A ++G Sbjct: 136 LFALLLPAGFRDAASVLKPRETHHTVRFGVAAALG 170 >gi|167767555|ref|ZP_02439608.1| hypothetical protein CLOSS21_02074 [Clostridium sp. SS2/1] gi|167710847|gb|EDS21426.1| hypothetical protein CLOSS21_02074 [Clostridium sp. SS2/1] gi|291558487|emb|CBL37287.1| Flp pilus assembly protein, protease CpaA [butyrate-producing bacterium SSC/2] Length = 167 Score = 41.6 bits (96), Expect = 0.045, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 10/130 (7%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG-LIVFIICFCFFA 77 L+ AA+ D IPN+++ G+ L +L + A +++G L+V I C F Sbjct: 9 LIMAAIYDYRDFKIPNKLN----GAGALITLVLAGVSGMKAADMMIGVLVVLISCGLLFY 64 Query: 78 FNIMGGGDVKLLTSTAVWFGWT-PSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 +GGGDVKLL A+ G P FL F I GI +V L R H+ +F +F Sbjct: 65 IGCLGGGDVKLLMVCAISIGRAMPRFLILSF---ICNGIYAVIFLWKRK-NFHLRLFRLF 120 Query: 137 VPKSFLMKNK 146 + NK Sbjct: 121 QYVTQCKDNK 130 >gi|317498627|ref|ZP_07956920.1| type IV leader peptidase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894114|gb|EFV16303.1| type IV leader peptidase [Lachnospiraceae bacterium 5_1_63FAA] Length = 167 Score = 41.6 bits (96), Expect = 0.048, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 10/130 (7%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG-LIVFIICFCFFA 77 L+ AA+ D IPN+++ G+ L +L + A +++G L+V I C F Sbjct: 9 LIMAAIYDYRDFKIPNKLN----GAGALITLVLAGVSGMKAADMMIGVLVVLISCGLLFY 64 Query: 78 FNIMGGGDVKLLTSTAVWFGWT-PSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 +GGGDVKLL A+ G P FL F I GI +V L R H+ +F +F Sbjct: 65 IGCLGGGDVKLLMVCAISIGRAMPRFLILSF---ICNGIYAVIFLWKRK-NFHLRLFRLF 120 Query: 137 VPKSFLMKNK 146 + NK Sbjct: 121 QYVTQCKDNK 130 >gi|288956967|ref|YP_003447308.1| hypothetical protein AZL_001260 [Azospirillum sp. B510] gi|288909275|dbj|BAI70764.1| hypothetical protein AZL_001260 [Azospirillum sp. B510] Length = 155 Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 8/144 (5%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79 +A +SD+ IPN +S+ + F + ++ + GL I+ F A Sbjct: 14 AWAMVSDIRRRTIPNWISLALAVLFAVATAADPGRFDPVLAATAAGLTFAILLAAFLA-G 72 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFF-VAILGGILSVFILTVRMITNHIPIFGMFVP 138 ++GGGDVKL+T+ A+W G S L LF A++GG+++ L +R + + Sbjct: 73 LVGGGDVKLMTAAALWTGL--SGLPGLFLGTALIGGLMAFGALALRGLRRLG----LLSR 126 Query: 139 KSFLMKNKIPYGIAISMGGLISYP 162 + + +PYG+AI L+S P Sbjct: 127 EGAGEMDGLPYGVAIGAAALLSIP 150 >gi|322434102|ref|YP_004216314.1| peptidase A24A prepilin type IV [Acidobacterium sp. MP5ACTX9] gi|321161829|gb|ADW67534.1| peptidase A24A prepilin type IV [Acidobacterium sp. MP5ACTX9] Length = 182 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 15/158 (9%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 C +L DL S IPNR++ + LL L + + L L GLI I FF Sbjct: 16 CASIGSLHDLRSRRIPNRLTGPAILCGLLLHLAL-GGWTQLGLSALAGLIAGGIFLVFFV 74 Query: 78 FNIMGGGDVKLLTSTAVWFGWT---PSFLSFLFFVAILG-------GILSVFILTVRMIT 127 MG GDVKL+T+ G ++ + A++G G L +L V + Sbjct: 75 AGGMGAGDVKLMTAVGCLAGTAYIKEVLIATVLIGALMGVALALYRGRLRETMLNVITLV 134 Query: 128 NHIPIFGMFVPKSFLMKN----KIPYGIAISMGGLISY 161 H G+ ++N ++PY + I+ G L+++ Sbjct: 135 QHHGAEGLAAHPELNVRNVATLRLPYALPIAAGCLLTF 172 >gi|238793620|ref|ZP_04637243.1| Flp pilus assembly protein, protease CpaA [Yersinia intermedia ATCC 29909] gi|238727035|gb|EEQ18566.1| Flp pilus assembly protein, protease CpaA [Yersinia intermedia ATCC 29909] Length = 154 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 15/84 (17%) Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 + F F ++GGGDVKL+T+ + S L F+ + AI+GG+ + I Sbjct: 79 YIIFHFKLIGGGDVKLITALLLALTAEQS-LDFIIYTAIMGGV--------------VMI 123 Query: 133 FGMFVPKSFLMKNKIPYGIAISMG 156 G+ + K + + +PY +AI+MG Sbjct: 124 IGLLINKHDIQQRGVPYAVAITMG 147 >gi|86360578|ref|YP_472466.1| putative cpaA pilus assembly protein [Rhizobium etli CFN 42] gi|86284680|gb|ABC93739.1| putative cpaA pilus assembly protein [Rhizobium etli CFN 42] Length = 181 Score = 41.2 bits (95), Expect = 0.057, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 14/143 (9%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV----------GLIVF 69 ++AA +D S IPN V + ++ + L A + E + L GL++F Sbjct: 20 LYAAWTDFRSWKIPNAVVLALMTVYALRAVAAMLGSEDLGAALFASSGIGGDVGAGLLMF 79 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI-LSVFILTVRMITN 128 ++ +AF + G GD KL ++ GW L F F + +LG + L L V + Sbjct: 80 MLGVALWAFRLFGAGDAKLFLPIGLFVGWH-GMLPFSFLLLVLGVMTLLALRLPVPLSVA 138 Query: 129 HIPIFGMFVPKSFLMKNKIPYGI 151 H+ F + KIPYG+ Sbjct: 139 HLAFFMRI--EEIRASRKIPYGV 159 >gi|148642206|ref|YP_001272719.1| type IV leader peptidase [Methanobrevibacter smithii ATCC 35061] gi|148551223|gb|ABQ86351.1| type IV leader peptidase [Methanobrevibacter smithii ATCC 35061] Length = 289 Score = 41.2 bits (95), Expect = 0.058, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 11/109 (10%) Query: 6 MVFSAVFLIPP-----FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYEL 57 M FS +FL+ FC + AA+ D+ + +I NR+++ +L L++ L + + + Sbjct: 1 MDFSIIFLVQIIVTSLFCCL-AAIFDVKTGIISNRLNLSLLIFGLISNLFLSVLSANIKY 59 Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLT--STAVWFGWTPSFLS 104 I ++ + +I+ F F+ I GGGDVKLLT +T + FG FL+ Sbjct: 60 ILCSIISMFVTYIVTFLFWKLKIWGGGDVKLLTAIATVIPFGINLDFLN 108 >gi|51246869|ref|YP_066753.1| type IV prepilin leader peptidase [Desulfotalea psychrophila LSv54] gi|50877906|emb|CAG37746.1| related to type IV prepilin leader peptidase [Desulfotalea psychrophila LSv54] Length = 263 Score = 41.2 bits (95), Expect = 0.061, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 31/160 (19%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-----FIICFCFFAFNI 80 D + +IP+ +S+ + L +F+ + E+ L L+GL+V + I + +F Sbjct: 120 DFYHQIIPDLISLPGIALGFLFSFI---NPEISWLSSLIGLLVGGGALYAIAWGYFTLRK 176 Query: 81 ---MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 MGGGD+KLL W GW S + +F ++ G I+ + L ++ N Sbjct: 177 QEGMGGGDIKLLAMLGAWLGWQ-SLVFIVFTSSLFGAIIGLIALRIQNKGN--------- 226 Query: 138 PKSFLMKNKIPYGIAISMGGLI----SYPDSYLFKVALMG 173 + KIP+G + + L+ S Y F++ L G Sbjct: 227 ------QTKIPFGPFLCLAALVYLFYSVEIQYFFQLYLNG 260 >gi|115358169|ref|YP_775307.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD] gi|115283457|gb|ABI88973.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD] Length = 159 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 7/150 (4%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 V L LV A+ DL + NR + +L+ A L+ A H+ + + Sbjct: 5 VQLTATLVLVSIAMQDLRERRVSNRAVLAFAMLYLIAAALVREGLAPFAGHVATAAAMLV 64 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + +GGGDVKL + +W G P L L V G + +L + Sbjct: 65 VFGALRHAGWLGGGDVKLAAAVFLWAG-PPLALPVLTIVGASGAACGLAMLAGLARQRRV 123 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 P + +PYG+A++ GG ++ Sbjct: 124 ------APAHPMATRGVPYGVALAFGGALA 147 >gi|291533367|emb|CBL06480.1| Type IV leader peptidase family [Megamonas hypermegale ART12/1] Length = 135 Score = 40.8 bits (94), Expect = 0.079, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 4/98 (4%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVFIICFCFFAFNIM 81 A D + I N+ S++ LG L+ ++ +D E I LL+ LI+F + + F+ +M Sbjct: 19 AWVDFKTLKIKNK-SLLYLGLILVVRLMIFNIDLEKIIYALLINLIIFCVIY-FYPKQLM 76 Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 G GD+KL A+W + P + ++ I GGI++++ Sbjct: 77 GAGDLKLALVLALWCNY-PQCIVAIYVSFIFGGIVAIY 113 >gi|241667108|ref|YP_002985192.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862565|gb|ACS60230.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 187 Score = 40.4 bits (93), Expect = 0.098, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 20/155 (12%) Query: 18 CLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALH-LLVGLIVFIICFCF 75 C + AA+ D IPN V+ +LG F+L A G+ +A L ++FII F Sbjct: 20 CTMTAAVLDHRHGHIPNAVTYPCLLGGFMLAAVSGGLAGIGLAFAGLFAAGLIFIIAF-- 77 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR----MITNHIP 131 A GGGDVKL+ + G P+ + ++GG+++VF + R ++ + Sbjct: 78 -AAGSCGGGDVKLMAALGAILGLWPA-IDVTLASLMVGGVIAVFSMARRVQWSVLARTVG 135 Query: 132 IFGMFVPKSFL----------MKNKIPYGIAISMG 156 +F + +P F + + +G+A ++G Sbjct: 136 LFALLLPAGFRDAASVLKPRETHHTVRFGVAAALG 170 >gi|296121062|ref|YP_003628840.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776] gi|296013402|gb|ADG66641.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776] Length = 183 Score = 40.4 bits (93), Expect = 0.099, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 4/107 (3%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC-FFA 77 L+ AA D +PN ++ M+ S L+ F++G L L+G++V + C +A Sbjct: 20 LILAAWIDGKELRVPNWITFPMVLSGLIYGFVMGGWAGL--GDSLIGMVVGLACLLPLYA 77 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 MG GDVKL+ W G ++ +F+ V ++G I+++ + R Sbjct: 78 VGGMGAGDVKLMAGMGAWLGAAITWQAFMVSV-VVGAIMAIIMACYR 123 >gi|86138001|ref|ZP_01056577.1| membrane protein, putative [Roseobacter sp. MED193] gi|85825593|gb|EAQ45792.1| membrane protein, putative [Roseobacter sp. MED193] Length = 168 Score = 40.4 bits (93), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 13/84 (15%) Query: 16 PFCLVFAALSDLFSAMIPNRVS------IVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 P C AA +DL S IPN ++ V+LG F++ ++ DY LHL +G+ Sbjct: 20 PLCFA-AAYTDLSSMRIPNWITDSLGAVYVILGLFIMPSW---ADYGWQLLHLPIGVA-- 73 Query: 70 IICFCFFAFNIMGGGDVKLLTSTA 93 I F F++ +MG GD K + + A Sbjct: 74 -IGFLFYSAGVMGAGDAKFIGAAA 96 >gi|197103823|ref|YP_002129200.1| prepilin peptidase CpaA [Phenylobacterium zucineum HLK1] gi|196477243|gb|ACG76771.1| prepilin peptidase CpaA [Phenylobacterium zucineum HLK1] Length = 172 Score = 40.4 bits (93), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82 A+ D+ S IPN + + + G+F+ A G+ +A H +G+ ++ FA +G Sbjct: 21 AVKDVASFTIPNWIPLALAGAFVPAALAAGLPPAALAAHAGLGVGALVLGMVLFAVRAIG 80 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111 GGD KL+ + +W GW P+ +FL I Sbjct: 81 GGDGKLMAAAVLWLGW-PALPTFLLVTVI 108 >gi|152994345|ref|YP_001339180.1| peptidase A24A prepilin type IV [Marinomonas sp. MWYL1] gi|150835269|gb|ABR69245.1| peptidase A24A prepilin type IV [Marinomonas sp. MWYL1] Length = 186 Score = 40.4 bits (93), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 14/102 (13%) Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI------- 120 V I+ F F MG GDVKL++ +W G+ L FL A++GG+L++ + Sbjct: 75 VLIVGFGLFLIGQMGAGDVKLMSVLCLWVGYDNQ-LVFLVVTALVGGMLALLMPVLSLLE 133 Query: 121 ----LTVRMITNHIPIFGMFVPKSFLMK--NKIPYGIAISMG 156 + I++ P + P F + +PYG+AIS G Sbjct: 134 IAGAKVIVQISSRFPRLKIPAPLVFSREGVKGLPYGLAISGG 175 >gi|170703399|ref|ZP_02894176.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10] gi|170131688|gb|EDT00239.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10] Length = 159 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 7/150 (4%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 V L LV A+ DL + NR + +L+ A L+ A H+ + + Sbjct: 5 VQLTATLVLVSIAMQDLRERRVSNRAVLAFAMLYLVAAALVREGLASFAGHVATAAAMLV 64 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + +GGGDVKL + +W G P L L V G + ++ + Sbjct: 65 VFGGMRHAGWLGGGDVKLAAAVFLWAG-PPLALPVLTIVGASGAACGLAMIAAVARQRRV 123 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 P + +PYG+A++ GG ++ Sbjct: 124 ------APAHPMATRGVPYGVALAFGGALA 147 >gi|320101690|ref|YP_004177281.1| peptidase A24A prepilin type IV [Isosphaera pallida ATCC 43644] gi|319748972|gb|ADV60732.1| peptidase A24A prepilin type IV [Isosphaera pallida ATCC 43644] Length = 269 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 11/115 (9%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLL----TAFLLGMDYELIALHLLVGLIVFIICFC 74 ++ AA+ D + +PN ++ LG+ +L T+ G + + L L G +++ +C Sbjct: 26 MIEAAIIDGWKLKVPNWLTYNFLGAGILYWTVTSGWAGFQFAM--LGFLAGFVLYPLCL- 82 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 MG GDVKLL W GW + + F A++GGI++V ++ H Sbjct: 83 ---VGGMGAGDVKLLFGIGAWTGWYATLVIFA-LCAVVGGIMAVIMMAREGQLAH 133 >gi|85859141|ref|YP_461343.1| flp pilus assembly protein, protease [Syntrophus aciditrophicus SB] gi|85722232|gb|ABC77175.1| flp pilus assembly protein, protease [Syntrophus aciditrophicus SB] Length = 180 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 26/161 (16%) Query: 19 LVFAALSDLFSAMIPNRV--SIVMLGS--FLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 L+ A+++DL + I NR+ S ++ G + LTA G L L L GL + I+ Sbjct: 20 LITASVTDLRAHRISNRLTYSTMLFGLIFYSLTAGFFGFLQSLSGLFL--GLALLIV--- 74 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-MITNHIPIF 133 F+ MG GDVKL+ + G F +FL A++GGI ++ IL + + + + F Sbjct: 75 FYLVGGMGAGDVKLMAAVGSLLGPQGVFAAFL-GTALIGGIYALIILAAKGYLMDTMKRF 133 Query: 134 GMFVPKSFLMKNK---IP-----------YGIAISMGGLIS 160 + + K+F M K IP YG+AIS+G L S Sbjct: 134 -VLMLKTFFMTKKFIYIPPPRPEKAPLLCYGVAISLGTLAS 173 >gi|223984525|ref|ZP_03634657.1| hypothetical protein HOLDEFILI_01952 [Holdemania filiformis DSM 12042] gi|223963511|gb|EEF67891.1| hypothetical protein HOLDEFILI_01952 [Holdemania filiformis DSM 12042] Length = 247 Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 19/138 (13%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L+ A+ DL + IP+R+S+ +L +L L ++ I +L LI+ + + Sbjct: 110 LIVIAMIDLDTMEIPDRLSVFIL---ILAVIALALEPSSIPSRILGALIISVPFWILSRL 166 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 N MGGGDVK++ + + G P L+ + +G I +++++ + Sbjct: 167 NAMGGGDVKIMCAAGFYLG-APLVLTAFVLSSFIGAIAALYLMICKKKDR---------- 215 Query: 139 KSFLMKNKIPYGIAISMG 156 K++IP+G +++G Sbjct: 216 -----KSEIPFGPFLAIG 228 >gi|296133253|ref|YP_003640500.1| peptidase A24A domain protein [Thermincola sp. JR] gi|296031831|gb|ADG82599.1| peptidase A24A domain protein [Thermincola potens JR] Length = 250 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 16/80 (20%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140 MGGGD+KL +W GW +FL FF+A L G +V I G+ Sbjct: 171 MGGGDIKLAAMLGLWLGWQQAFLG--FFLAFLSGT-AVGI-------------GLMATGQ 214 Query: 141 FLMKNKIPYGIAISMGGLIS 160 K+ IP+G IS+G L+S Sbjct: 215 KSRKDAIPFGPFISLGALLS 234 >gi|258405294|ref|YP_003198036.1| peptidase A24A prepilin type IV [Desulfohalobium retbaense DSM 5692] gi|257797521|gb|ACV68458.1| peptidase A24A prepilin type IV [Desulfohalobium retbaense DSM 5692] Length = 189 Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 32/164 (19%) Query: 18 CLVFAALSDLFSAMIPNRVS--IVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFIICF 73 L+FAAL DL IPN ++ + + TAF L G+ + + + L+G +F+ + Sbjct: 17 ALIFAALYDLRYQKIPNLLNFPLALFALIYHTAFTGLNGLAFGVTGM--LLGTALFLPPY 74 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR--------- 124 F MG GD KL+ + G F+S L F AI GG+ +V +L V Sbjct: 75 IFGG---MGAGDTKLMGAIGAVLGAKGVFVSAL-FTAIFGGLYAVLLLLVHRGYARTLMQ 130 Query: 125 ----------MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 ++ +IP P+S ++ YGIAI++G L Sbjct: 131 RTWEGLKTLVLVRRYIPDSS---PQSTNTSPRLCYGIAIALGTL 171 >gi|116621340|ref|YP_823496.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus Ellin6076] gi|116224502|gb|ABJ83211.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus Ellin6076] Length = 184 Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 5/105 (4%) Query: 22 AALSDLFSAMIPNRVSI--VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79 AA+ D+ IPN +++ V+ G + T G+ + AL L + F + +A + Sbjct: 21 AAIYDIRYRRIPNWLNMFGVLAGIAMNTFLYQGLPGLVFALKGL--FLAFAVYVVLYALH 78 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 MG GDVKL+ + GW F F+ A++GGI+S+ ++ R Sbjct: 79 AMGAGDVKLMAAVGAIVGWENWFGIFI-VTAVIGGIMSLILVASR 122 >gi|22127356|ref|NP_670779.1| hypothetical protein y3482 [Yersinia pestis KIM 10] gi|45442770|ref|NP_994309.1| hypothetical protein YP_3009 [Yersinia pestis biovar Microtus str. 91001] gi|108809088|ref|YP_653004.1| hypothetical protein YPA_3097 [Yersinia pestis Antiqua] gi|108810718|ref|YP_646485.1| hypothetical protein YPN_0553 [Yersinia pestis Nepal516] gi|145597789|ref|YP_001161865.1| hypothetical protein YPDSF_0479 [Yersinia pestis Pestoides F] gi|150260277|ref|ZP_01917005.1| putative prepilin peptidase [Yersinia pestis CA88-4125] gi|165939084|ref|ZP_02227636.1| type IV prepilin peptidase family [Yersinia pestis biovar Orientalis str. IP275] gi|166212075|ref|ZP_02238110.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua str. B42003004] gi|167419298|ref|ZP_02311051.1| type IV prepilin peptidase family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425122|ref|ZP_02316875.1| type IV prepilin peptidase family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466372|ref|ZP_02331076.1| membrane protein [Yersinia pestis FV-1] gi|218927884|ref|YP_002345759.1| hypothetical protein YPO0695 [Yersinia pestis CO92] gi|229837377|ref|ZP_04457540.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Pestoides A] gi|229840589|ref|ZP_04460748.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842861|ref|ZP_04463013.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar Orientalis str. India 195] gi|229900913|ref|ZP_04516037.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Nepal516] gi|270487707|ref|ZP_06204781.1| peptidase, A24 (type IV prepilin peptidase) family protein [Yersinia pestis KIM D27] gi|294502761|ref|YP_003566823.1| hypothetical protein YPZ3_0651 [Yersinia pestis Z176003] gi|21960440|gb|AAM87030.1|AE013951_5 hypothetical [Yersinia pestis KIM 10] gi|45437636|gb|AAS63186.1| putative membrane protein [Yersinia pestis biovar Microtus str. 91001] gi|108774366|gb|ABG16885.1| membrane protein [Yersinia pestis Nepal516] gi|108781001|gb|ABG15059.1| putative membrane protein [Yersinia pestis Antiqua] gi|115346495|emb|CAL19370.1| putative membrane protein [Yersinia pestis CO92] gi|145209485|gb|ABP38892.1| membrane protein [Yersinia pestis Pestoides F] gi|149289685|gb|EDM39762.1| putative prepilin peptidase [Yersinia pestis CA88-4125] gi|165913040|gb|EDR31665.1| type IV prepilin peptidase family [Yersinia pestis biovar Orientalis str. IP275] gi|166206821|gb|EDR51301.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua str. B42003004] gi|166963292|gb|EDR59313.1| type IV prepilin peptidase family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055885|gb|EDR65666.1| type IV prepilin peptidase family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682252|gb|EEO78344.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Nepal516] gi|229690128|gb|EEO82185.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar Orientalis str. India 195] gi|229696955|gb|EEO87002.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705500|gb|EEO91510.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Pestoides A] gi|262360793|gb|ACY57514.1| hypothetical protein YPD4_0605 [Yersinia pestis D106004] gi|262364738|gb|ACY61295.1| hypothetical protein YPD8_0605 [Yersinia pestis D182038] gi|270336211|gb|EFA46988.1| peptidase, A24 (type IV prepilin peptidase) family protein [Yersinia pestis KIM D27] gi|294353220|gb|ADE63561.1| hypothetical protein YPZ3_0651 [Yersinia pestis Z176003] gi|320016742|gb|ADW00314.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 140 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 20/138 (14%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L+F SD+ +I N+ I + SF F L M + + +++ ++ I + F F Sbjct: 16 LLFVCYSDIRHRIISNKFIISI--SFNAIIFSLVMHH---TVSIIIPIVALFIGYIIFHF 70 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 N+MGGGDVKL+T + S L+F+ + A++GG++ V L + + Sbjct: 71 NVMGGGDVKLITVLLLALTAEQS-LNFIIYTAVMGGVVMVVGLLINRVD----------- 118 Query: 139 KSFLMKNKIPYGIAISMG 156 + K +PY +AI+ G Sbjct: 119 ---IQKRGVPYAVAITAG 133 >gi|149200855|ref|ZP_01877830.1| peptidase A24A, prepilin type IV [Roseovarius sp. TM1035] gi|149145188|gb|EDM33214.1| peptidase A24A, prepilin type IV [Roseovarius sp. TM1035] Length = 166 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 19/159 (11%) Query: 9 SAVFLIP---PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLL 63 SA++ +P P C ++ ALSDL IPN + ++G FL+ L +DY HL Sbjct: 9 SALWFLPFVLPVC-IWVALSDLRRMKIPNTAVLTLVGIFLVIGLMTLPLVDYAWRLSHLA 67 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTA--VWFGWTPSFLSFLFFVAILGGILSVFIL 121 V L+ I A +MG GD K + + A V G + L+F+F +LG ++ + Sbjct: 68 VMLVAGI---AMNAVRLMGAGDAKFIAAAAPFVALG-DAATLAFIFAATLLGAFVTHRAI 123 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + P + +S+ K P G A +GG ++ Sbjct: 124 MYSPLRRLAPDW-----QSWHAGKKFPMGFA--LGGTLA 155 >gi|149185490|ref|ZP_01863806.1| peptidase A24A, prepilin type IV [Erythrobacter sp. SD-21] gi|148830710|gb|EDL49145.1| peptidase A24A, prepilin type IV [Erythrobacter sp. SD-21] Length = 163 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 15/132 (11%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82 AL D+ + +PN + +ML + L AF+ G + +AL L F++ + F+ G Sbjct: 21 ALLDVCTRKLPNILCAIMLATGLTFAFV-GGGWPALALGLAHVAAAFLLGYLFYLVGTFG 79 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG---ILSVFILTVRMITNHIPIFGMFVPK 139 GD K T+TA +F P + FVAI G +L V++ R + PK Sbjct: 80 AGDAKFYTATAGFF---PLWDMLGLFVAITGAGFLLLLVWVFMKRSLRTR--------PK 128 Query: 140 SFLMKNKIPYGI 151 K+PYG+ Sbjct: 129 DRSDFAKLPYGV 140 >gi|260893560|ref|YP_003239657.1| peptidase A24A domain protein [Ammonifex degensii KC4] gi|260865701|gb|ACX52807.1| peptidase A24A domain protein [Ammonifex degensii KC4] Length = 250 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 22/137 (16%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF- 76 CL+ A+ DL +IPNR+ +L AFL G+ L+A + + + Sbjct: 107 CLLVASFIDLEHCLIPNRL--------VLVAFLGGVPLGLLARDVGLLSALLGAGAAGGF 158 Query: 77 -------AFNIMGGGDVKLLTSTAVWFGWTPSFL-SFL-FFVAILGGILSVFILTVRM-I 126 + MGGGD+KL T ++ GW S L +FL FVA + GI V +LT R Sbjct: 159 LLLLALASRGGMGGGDIKLATVAGLFLGWPLSLLGTFLGCFVAGIWGI--VLLLTRRKGR 216 Query: 127 TNHIPIFGMFVPKSFLM 143 +HIP FG F+ FL+ Sbjct: 217 KDHIP-FGPFLSLGFLI 232 >gi|311031471|ref|ZP_07709561.1| peptidase A24A domain protein [Bacillus sp. m3-13] Length = 180 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 20/145 (13%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L+ +SDL +IPN++ + LG F++ F + ++ I HL+ + F+I Sbjct: 39 LIIIVISDLHYMIIPNKILLFFLGLFIIERFFI--PFQTIPDHLIGMAVGFLIPLLVAVI 96 Query: 79 NI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 + MGGGDVKL GW L+F F +++G I ++ + + + +P Sbjct: 97 SKGGMGGGDVKLFAVLGFVLGWELVILTF-FLSSLIGMIAALIGMLLGKVKRGVP----- 150 Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161 P+G +I++ LI+Y Sbjct: 151 ----------FPFGPSIALAALITY 165 >gi|307261007|ref|ZP_07542689.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869309|gb|EFN01104.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 131 Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 22/133 (16%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +DL +I NRV + +L + ++L+ Y L L ++ +I F F N++G G Sbjct: 11 TDLRYRLISNRVIMALLLVIIPFSYLM---YG--TLSWLPAVLCLVIGFVLFLLNVIGAG 65 Query: 85 DVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 DVKLL AV P SF F F+ G+L I I G + + Sbjct: 66 DVKLL---AVLMLAVPSSFAIFFLFLTACSGLL-------------IIIIGWLFYRQTIR 109 Query: 144 KNKIPYGIAISMG 156 + +PYGIAISMG Sbjct: 110 EKGLPYGIAISMG 122 >gi|323702111|ref|ZP_08113779.1| peptidase A24A prepilin type IV [Desulfotomaculum nigrificans DSM 574] gi|323532993|gb|EGB22864.1| peptidase A24A prepilin type IV [Desulfotomaculum nigrificans DSM 574] Length = 167 Score = 39.3 bits (90), Expect = 0.23, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 46/95 (48%), Gaps = 16/95 (16%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFF-VAILGGILSVFIL--TVRMITNHIPIFGMFV 137 MG GDVKLL W G P F+ F F AI+GGI++ F L T ++ I V Sbjct: 72 MGAGDVKLLAVIGAWQG--PQFVWFCFLCTAIVGGIIATFQLVRTGKLRPTFKFILFTLV 129 Query: 138 PKS-------FLMKNKI----PYGIAISMGGLISY 161 P S L K+ PYG+AI+ G L +Y Sbjct: 130 PGSPKVNAFGTLATAKVGEAFPYGVAIAAGTLATY 164 >gi|253687066|ref|YP_003016256.1| peptidase A24A prepilin type IV [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753644|gb|ACT11720.1| peptidase A24A prepilin type IV [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 183 Score = 39.3 bits (90), Expect = 0.23, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 21/161 (13%) Query: 18 CLVFAALSDLFSAMIPNRVSIVML-------GSFLLTAFLLGMDYELIALHLLVGLI-VF 69 CL++ +DL I NR +++L S +L + L M L L G V Sbjct: 16 CLLWCISTDLLVRKITNRAVLILLLGWLFFSASHVLQSGALDMLALRKTLWALPGAAAVL 75 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI--- 126 ++ F F +G GDVKL++ +W G + F+ A+ GG+L++ + + + Sbjct: 76 VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLNTVPTA 134 Query: 127 -------TNHIPIFGMFVPKSFL--MKNKIPYGIAISMGGL 158 TN I + +P + + IPYG+AI+ G + Sbjct: 135 VAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAM 175 >gi|87199544|ref|YP_496801.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans DSM 12444] gi|87135225|gb|ABD25967.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans DSM 12444] Length = 157 Score = 39.3 bits (90), Expect = 0.23, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 26/168 (15%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPN----RVSIVMLGSFLLTAFLLGMDYE 56 M ES A L+ F V +SD+ + +PN ++ LG+ L FLL Sbjct: 1 MIESHQQAIAFLLLLGFA-VAGTISDVRNRRLPNWLCLATAVTGLGASL---FLLEYGDP 56 Query: 57 LIAL--HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL-- 112 + A H G I+ FA +GGGD K + A WF P L+ L V + Sbjct: 57 IWAFPAH---GAASLIVGMALFALRWIGGGDAKFYAAVACWF---PLRLAALLLVTVTLS 110 Query: 113 GGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 G +L + +R +P S +PYG+AI GGL++ Sbjct: 111 GVLLLILFFAIRRFRG--------LPISRKDGASLPYGVAIGTGGLVA 150 >gi|292670460|ref|ZP_06603886.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292647870|gb|EFF65842.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 188 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 17/103 (16%) Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 V C A +GGGDVKL +W GW + ++ L+ +LGG + +L Sbjct: 97 VLFYCLYIAARGGLGGGDVKLAAGLGLWLGWEAAVIA-LWIAFMLGGTAAAVLLITGRRK 155 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY-PDSYLFKV 169 H + IP+G +++GG I + YL+++ Sbjct: 156 RH---------------DGIPFGPFLALGGYIGFIAGDYLWRL 183 >gi|148976665|ref|ZP_01813352.1| hypothetical protein VSWAT3_19736 [Vibrionales bacterium SWAT-3] gi|145964016|gb|EDK29274.1| hypothetical protein VSWAT3_19736 [Vibrionales bacterium SWAT-3] Length = 176 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 4/125 (3%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC-FCFFAFNIMGGG 84 D+ +IPNR+ I+++ + ++ G ++ +A+ GL+VF + M G Sbjct: 19 DVKENIIPNRILILLVFIYFISLINGGFTWDSLAVSFF-GLVVFFFSGLALYFLRAMSPG 77 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH-IPIFGMFVPKSFLM 143 DVKLL ++ GW S L +F+ I G++ F L + N + + G F K L+ Sbjct: 78 DVKLLGVIGLYIGWG-SLLDVSYFILISSGVIGTFYLLYNLANNSALTVKGYFQEKLMLI 136 Query: 144 KNKIP 148 P Sbjct: 137 SGMSP 141 >gi|325525575|gb|EGD03365.1| peptidase A24A prepilin type IV [Burkholderia sp. TJI49] Length = 168 Score = 38.9 bits (89), Expect = 0.28, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 20/154 (12%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79 + AA +DL S IPNRV V L L+ L A L F + F+ Sbjct: 8 IVAASTDLASRRIPNRVVAVGLAGALIAQCALHGVAAGTAGWLAGAATGFGLLLPFYLLR 67 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA--ILGGILSV-FILT---VRMITNHIPIF 133 M GDVKL+ + W G P+ ++F +A +LGGI +V F + +R + ++ Sbjct: 68 GMAAGDVKLMLAVGAWVG--PA-MAFRIVLAAFVLGGIGAVGFAIAHGRLRQMAANVRAL 124 Query: 134 GMFVPKS-----------FLMKNKIPYGIAISMG 156 M P F +PYG+AI+ G Sbjct: 125 IMRRPGRPRAATADGHGPFESVGTLPYGVAIAAG 158 >gi|78062908|ref|YP_372816.1| peptidase A24A, prepilin type IV [Burkholderia sp. 383] gi|77970793|gb|ABB12172.1| Peptidase A24A, prepilin type IV [Burkholderia sp. 383] Length = 157 Score = 38.9 bits (89), Expect = 0.28, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 11/150 (7%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82 A DL + NR + + + A L + +A H+ G + ++ +G Sbjct: 17 AAQDLRDRRLSNRGVLAFAALYFVAAALARDGFAPLAGHVATGAAMLLLFGGMRHAGWIG 76 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAI-LGGILSVFILTVRMITNHIPIFGMFVPKSF 141 GGDVKL + +W G P+ L+F + GG+L L P+ Sbjct: 77 GGDVKLAAAVFLWAG--PA-LAFPVLTGVGAGGVLCGVALLASRPRRAAPV-------RA 126 Query: 142 LMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 + +PYG+A+++GG ++ S+ V+L Sbjct: 127 VATRGVPYGVALALGGTLAVWASFPHTVSL 156 >gi|22298019|ref|NP_681266.1| type 4 prepilin-like proteins leader peptide processing enzyme [Thermosynechococcus elongatus BP-1] gi|22294197|dbj|BAC08028.1| type 4 prepilin-like proteins leader peptide processing enzyme [Thermosynechococcus elongatus BP-1] Length = 248 Score = 38.9 bits (89), Expect = 0.30, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Query: 46 LTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN--IMGGGDVKLLTSTAVWFGWTPSFL 103 LT L G+ +IA + + L I AFN +MGGGD KL W GW + Sbjct: 126 LTTGLGGITEGIIAAVIGIWLFDLIRWGGAIAFNQEVMGGGDGKLAAMIGAWLGWQGLLV 185 Query: 104 SFLFFVAILGGILSVFILTVRMITNHIPI-FGMFV 137 +F F LGG++ F + + I PI FG F+ Sbjct: 186 TF-FLACALGGLMGGFGIALGWIQRRQPIPFGPFL 219 >gi|189485485|ref|YP_001956426.1| A24A-like peptidase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287444|dbj|BAG13965.1| A24A-like peptidase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 218 Score = 38.9 bits (89), Expect = 0.32, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 29/164 (17%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL---LGMDYELIALHLLVG-------- 65 F L+ + +D F +IP V I ++ + + +F+ LG Y ++ ++G Sbjct: 57 FSLISVSTTDYFHRIIPAIVPIFLIITGFIFSFMNSALGETYPSRFINSVLGILTGGGVL 116 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 L+ + + +GGGD+KL+ V+ GW + + +F A++GGI + +L + Sbjct: 117 LVAGFLGQLIYKKEAIGGGDIKLMAGVGVFIGWEKALFA-VFIAAVMGGIAGLILLAAKK 175 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY--PDSYLF 167 I K IP+G +S I+ P Y+F Sbjct: 176 IEK---------------KGYIPFGPFLSAASFITLFIPQPYIF 204 >gi|160897517|ref|YP_001563099.1| peptidase A24A prepilin type IV [Delftia acidovorans SPH-1] gi|160363101|gb|ABX34714.1| peptidase A24A prepilin type IV [Delftia acidovorans SPH-1] Length = 189 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 11/111 (9%) Query: 55 YELIALHLLVGLIV-FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113 +++ A + L GL+ F++ F+A MG GDVK +WFG + L ++L Sbjct: 51 FQVSAWNALAGLLAGFVVLLPFYALRWMGAGDVKFGAVAGLWFGLSFDLLLIWTGGSLLA 110 Query: 114 GILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG--GLISYP 162 G+ + +L++R +++ P ++ ++P A + G S P Sbjct: 111 GLHGLLVLSLRHLSHS--------PTGLWLQARLPLAWAARLAPLGAASQP 153 >gi|327538083|gb|EGF24773.1| hypothetical protein RBWH47_03140 [Rhodopirellula baltica WH47] Length = 234 Score = 38.5 bits (88), Expect = 0.37, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L A DL + IP+ +S V++G + + LLG I L G++ +I F F Sbjct: 106 LAIATACDLRTREIPDWIS-VLIGVVAIVSSLLGWLGLSIVWVLAGGVVGLVIASALFRF 164 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117 +GGGD KL+ + A+ G L LF +AI GG+LS Sbjct: 165 AKLGGGDGKLIIALAMLVGPV-GILIVLFGMAITGGVLS 202 >gi|261402262|ref|YP_003246486.1| Peptidase A24A domain protein [Methanocaldococcus vulcanius M7] gi|261369255|gb|ACX72004.1| Peptidase A24A domain protein [Methanocaldococcus vulcanius M7] Length = 340 Score = 38.5 bits (88), Expect = 0.38, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 17/132 (12%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL-I 67 AV++I L+ A+++D+ +IP++ I+M L + Y ++ ++ Sbjct: 5 DAVYIINFILLILASITDIKERIIPHKYVIIM------AVLNLIVGYHYFGINAVIAFFT 58 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF-----LFFVAI---LGGILSVF 119 FI+C MGGGDVKL T+ A F + SF+ + L+ +AI + + ++ Sbjct: 59 TFILCLILSIG--MGGGDVKLFTALAPIFAYPDSFIFYVPKYILYLIAISMFIAAVFPMY 116 Query: 120 ILTVRMITNHIP 131 + VR + IP Sbjct: 117 KILVRYWKDIIP 128 >gi|303239929|ref|ZP_07326452.1| peptidase A24A domain protein [Acetivibrio cellulolyticus CD2] gi|302592639|gb|EFL62364.1| peptidase A24A domain protein [Acetivibrio cellulolyticus CD2] Length = 267 Score = 38.5 bits (88), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 19/100 (19%) Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 L+VGLI +I + + MGGGD+K+ ++ GW +F++ L + +L G++S+ ++ Sbjct: 171 LVVGLIGMLI---YKTDDAMGGGDIKIFAPIGIFLGWKMTFIALLASI-VLAGLISLILV 226 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 +++ K+ IP+G I MG LI+Y Sbjct: 227 IIKVKGR---------------KSTIPFGPFIVMGTLITY 251 >gi|115361030|ref|YP_778167.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD] gi|115286358|gb|ABI91833.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD] Length = 180 Score = 38.5 bits (88), Expect = 0.39, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 23/174 (13%) Query: 6 MVFSAVFLIP-PFCL----VFAALSDLFSAMIPNR-VSIVMLGSFLLTAFLLGMDYELIA 59 MV A P P C+ + AA +D+ S IPNR V++ ++G+ + L G+ +A Sbjct: 1 MVLPAALPYPVPLCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCTLHGIQAGALA 60 Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILS 117 F + F+ M GDVKL+ + W G +F L F V +G I Sbjct: 61 WLAGA-ATGFGLLLPFYLLRGMAAGDVKLMLAIGAWVGAQMTFYIVLATFLVGGIGAI-G 118 Query: 118 VFILTVRMITNHIPIFGMFV-------------PKSFLMKNKIPYGIAISMGGL 158 +L RM ++ + P F +PYG+AI+ G L Sbjct: 119 FALLRGRMRQMCANVWALIAHRSTGAYAGATDGPVEFASVGALPYGVAIAAGTL 172 >gi|92116345|ref|YP_576074.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14] gi|91799239|gb|ABE61614.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14] Length = 159 Score = 38.5 bits (88), Expect = 0.40, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 6/84 (7%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIAL--HLLVGLIVFIICFCFF 76 V+ A DL +IP+R+++++ + ++ A L G + L +++G +V+++ + +F Sbjct: 18 VWLAWIDLRDGIIPDRLNLLVAATGVVRMAALAGWEPAGARLCEGVVIGAVVWLLRWLYF 77 Query: 77 AFNIMGG---GDVKLLTSTAVWFG 97 + + G GDVKLL ++AVW G Sbjct: 78 KWRKLQGLGLGDVKLLAASAVWIG 101 >gi|295700372|ref|YP_003608265.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1002] gi|295439585|gb|ADG18754.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1002] Length = 180 Score = 38.5 bits (88), Expect = 0.41, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 18/155 (11%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELI-ALHLLVGLIV-FIICFCFFA 77 + AA +DL + IPNR +++LG + A + + L AL L G F + F+ Sbjct: 20 IVAASTDLTARRIPNR--LIVLGLSVALAVQMSIHGPLAGALDWLSGAACGFALLMPFYL 77 Query: 78 FNIMGGGDVKLLTSTAVWFG----WTPSFLSFL------FFVAILGGILSVFILTVRMIT 127 M GDVKLL W G W + +FL + + G + + +R + Sbjct: 78 LRGMAAGDVKLLMMIGAWVGPALTWRIALATFLIGGLWSLLIVLCRGRFARLLANLRQLI 137 Query: 128 NHIPIFGMFVPKSFLMKN----KIPYGIAISMGGL 158 + + + P ++ IPYG+AI+ G L Sbjct: 138 GGLAVAPLRRPSLIDARSGSVGSIPYGVAIAAGTL 172 >gi|261820212|ref|YP_003258318.1| peptidase A24A prepilin type IV [Pectobacterium wasabiae WPP163] gi|261604225|gb|ACX86711.1| peptidase A24A prepilin type IV [Pectobacterium wasabiae WPP163] Length = 183 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 21/161 (13%) Query: 18 CLVFAALSDLFSAMIPNR-VSIVMLGSFLLTAF--LLGMDYELIALHLLV-----GLIVF 69 CL++ +DL I N+ V I++LG +A L +++AL ++ V Sbjct: 16 CLLWCISTDLLVRKITNQAVLILLLGWLFFSALYVLQSGALDMVALRKMLWALPGAAAVL 75 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI--- 126 ++ F F +G GDVKL++ +W G + F+ A+ GG+L++ + + + Sbjct: 76 VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FIMVTALAGGVLALSLPLLNTVPTA 134 Query: 127 -------TNHIPIFGMFVPKSF--LMKNKIPYGIAISMGGL 158 TN I + +P + + IPYG+AI+ G + Sbjct: 135 VALGVQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAI 175 >gi|258515846|ref|YP_003192068.1| peptidase A24A domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257779551|gb|ACV63445.1| peptidase A24A domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 248 Score = 38.1 bits (87), Expect = 0.48, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 5/116 (4%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA-LHLLVGLIVFIICFCFFA 77 LV AA DL +IP++V + L + FL Y+LI+ L + ++ A Sbjct: 108 LVVAAFIDLEHGIIPDQVVVAALVLGVPVLFL-ASPYKLISGLTGFAAAGIIMLVIALLA 166 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT--VRMITNHIP 131 MGGGDVKL ++ GW P+ L+ LF + GG++ + +L + +H+P Sbjct: 167 PGGMGGGDVKLSAVIGLYLGW-PNVLAGLFLAFLSGGLVGIVLLCSGRKKRKDHVP 221 >gi|313895200|ref|ZP_07828757.1| peptidase, A24 family [Selenomonas sp. oral taxon 137 str. F0430] gi|312976095|gb|EFR41553.1| peptidase, A24 family [Selenomonas sp. oral taxon 137 str. F0430] Length = 189 Score = 38.1 bits (87), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 18/102 (17%) Query: 62 LLVGLIVFIICFCFF--AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 +L G + ++ +C + A MGGGDVK +W GW + ++ ++ ++GG+++ F Sbjct: 90 ILGGTLCGVLFYCLYIAARGGMGGGDVKFALGIGLWLGWESAIIA-VWTAFLIGGMMAAF 148 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 +L R ++ +P+G ++ GG +++ Sbjct: 149 LLLTRRKGR---------------RDALPFGPCLAAGGYLAF 175 >gi|332982938|ref|YP_004464379.1| peptidase A24A prepilin type IV [Mahella australiensis 50-1 BON] gi|332700616|gb|AEE97557.1| peptidase A24A prepilin type IV [Mahella australiensis 50-1 BON] Length = 145 Score = 38.1 bits (87), Expect = 0.52, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 23/131 (17%) Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-----LLVGLIVFIICFCF 75 +AA +DL I + V LT + G Y+L+ H L+ VF + F Sbjct: 18 YAAATDLKRREIDHWVP--------LTVAVYGTLYQLLYAHRLPEALICTAAVFAVLFAV 69 Query: 76 FAFNI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF--ILTVRMITNHIP 131 FA + GGGDVKLLTS A+++G + +F I+G I V I+T R + P Sbjct: 70 FAVSNGGFGGGDVKLLTSLALFYG--SNIFVVVFASCIIGAIYGVIRAIVTRRGLKTESP 127 Query: 132 IFGMFVPKSFL 142 F P FL Sbjct: 128 ----FAPAVFL 134 >gi|89053480|ref|YP_508931.1| peptidase A24A, prepilin type IV [Jannaschia sp. CCS1] gi|88863029|gb|ABD53906.1| peptidase A24A prepilin type IV [Jannaschia sp. CCS1] Length = 167 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 21/173 (12%) Query: 9 SAVFLIP---PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLV 64 A++ +P P C ++ ALSDL IPN + + G FL+T F L MD L L L Sbjct: 9 EALWFLPFAIPIC-IWVALSDLRQMRIPNVAVLALTGGFLITGLFALPMDAYLWRLAALG 67 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 IV + F + ++G GD K + A + P +LFF+A+ +L +T R Sbjct: 68 --IVLLAGFVITSLGLVGAGDSKFAAAMAPFI--APG--DYLFFLALFSLVLIGSWITHR 121 Query: 125 MITNHIPIFGMFVPKSFLMKNKI-PYGIAISMGGLISYPDSYLFKVALMGLSA 176 + S + K+ P G+A++ G L+ Y +MGLSA Sbjct: 122 SAGRVPAVRRATAHWSSWEQGKLFPMGVALA-GALVIY--------LMMGLSA 165 >gi|300704928|ref|YP_003746531.1| prepilin peptidase transmembrane protein [Ralstonia solanacearum CFBP2957] gi|299072592|emb|CBJ43942.1| putative prepilin peptidase transmembrane protein [Ralstonia solanacearum CFBP2957] Length = 176 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 34/165 (20%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI-------- 70 + AA SD+ + IPN ++GS L+ A + + +A L G + ++ Sbjct: 16 IAIAAASDVRARRIPNW----LVGSGLVAALI----GQCLAQGLAAGGMAWLGGTAVGMG 67 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVFILTVRMITNH 129 +C +A MG GDVKL+ + + G +F ++F+ F+A GG+L++ ++ +R Sbjct: 68 MCIGIYALGGMGAGDVKLMGAIGAFMGPFGAFHVAFVSFLA--GGVLALVMVLLRREGQR 125 Query: 130 -----------IPIFGMFVPKSFLMKN----KIPYGIAISMGGLI 159 +P G +P K ++PY +A + G L+ Sbjct: 126 SLAGVSTLLLSLPFGGKAMPSQHGEKRSSTIQLPYAVAFAAGTLL 170 >gi|320529765|ref|ZP_08030843.1| peptidase, A24 family protein [Selenomonas artemidis F0399] gi|320138004|gb|EFW29908.1| peptidase, A24 family protein [Selenomonas artemidis F0399] Length = 196 Score = 37.7 bits (86), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 18/102 (17%) Query: 62 LLVGLIVFIICFCFF--AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 +L G + ++ +C + A MGGGDVK +W GW + ++ ++ ++GG+++ F Sbjct: 97 ILGGTLCGVLFYCLYIAARGGMGGGDVKFALGIGLWLGWESAIIA-VWTAFLIGGMMAAF 155 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 +L R ++ +P+G ++ GG +++ Sbjct: 156 LLLTRRKGR---------------RDALPFGPCLAAGGDLAF 182 >gi|227326300|ref|ZP_03830324.1| hypothetical protein PcarcW_02894 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 183 Score = 37.7 bits (86), Expect = 0.63, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 21/161 (13%) Query: 18 CLVFAALSDLFSAMIPNRVSIVML-------GSFLLTAFLLGMDYELIALHLLVGLI-VF 69 CL++ +DL I N+ +++L S +L A L M L L G V Sbjct: 16 CLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQAGALDMLALRKMLWALPGAAAVL 75 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI--- 126 ++ F F +G GDVKL++ +W G + F+ A+ GG+L++ + + + Sbjct: 76 VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLNTVPTA 134 Query: 127 -------TNHIPIFGMFVPKSFL--MKNKIPYGIAISMGGL 158 TN I + +P + + IPYG+AI+ G + Sbjct: 135 VAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAM 175 >gi|261251284|ref|ZP_05943858.1| type IV prepilin peptidase TadV/CpaA [Vibrio orientalis CIP 102891] gi|260938157|gb|EEX94145.1| type IV prepilin peptidase TadV/CpaA [Vibrio orientalis CIP 102891] Length = 152 Score = 37.7 bits (86), Expect = 0.65, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 18/159 (11%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M ++ V +I C V + +SD +PN++ S +T F+ + Sbjct: 1 MNLDNIIEITVVIINIVCAVQSCISDHKHRTLPNKIC----KSLFITNFIASFYFGYFIQ 56 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVF 119 + I+F++ + G GD+KLL + ++ G P ++ L V LGG V Sbjct: 57 SATITSIIFLVLLIVWLIGGFGAGDIKLLCAFSI--GIKPELTIACLVLVGFLGGFQLVV 114 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + V ++T K+ L + IPYGI IS+ G+ Sbjct: 115 MYLVGLMT-----------KTNLFEKGIPYGIPISISGV 142 >gi|172065270|ref|YP_001815982.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6] gi|171997512|gb|ACB68429.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6] Length = 179 Score = 37.7 bits (86), Expect = 0.66, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 22/163 (13%) Query: 16 PFCL----VFAALSDLFSAMIPNR-VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 P C+ + AA +D+ S IPNR V++ ++G+ + L G+ +A F Sbjct: 11 PLCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCALHGIQAGALAWLAGA-ATGFG 69 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGI------------- 115 + F+ M GDVKL+ + W G +F L F V +G I Sbjct: 70 LLLPFYLLRGMAAGDVKLMLAIGAWVGAQMTFYIVLATFLVGGIGAIGFALLRGRMRQMC 129 Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 +V+ L R T P F +PYG+AI+ G L Sbjct: 130 ANVWTLIARRSTGAYA-GATDGPVEFASVGALPYGVAIAAGTL 171 >gi|298674644|ref|YP_003726394.1| peptidase A24B, FlaK domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287632|gb|ADI73598.1| Peptidase A24B, FlaK domain protein [Methanohalobium evestigatum Z-7303] Length = 255 Score = 37.7 bits (86), Expect = 0.69, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 13/87 (14%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL---HLLVGL 66 +F PF L+++ SDL + +PN+ L SF+L ++ + Y+LI HL+ L Sbjct: 6 KIFFFLPF-LLYSCYSDLKTRRVPNK-----LWSFMLVPGMIFVIYDLINYGFAHLVHLL 59 Query: 67 IVFIICFCF----FAFNIMGGGDVKLL 89 I F+ F F F+FN GG D KL+ Sbjct: 60 ISFVFIFGFVYVLFSFNAFGGADAKLM 86 >gi|171920999|gb|ACB59182.1| TadV [Actinobacillus suis ATCC 33415] Length = 143 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 22/137 (16%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +DL +I NR+ + +L + ++L+ L L L+ I F F FNI+G G Sbjct: 22 TDLRYRLISNRIIMALLLVTIPFSYLVHG-----TLFWLPALLCLAIGFILFMFNIIGAG 76 Query: 85 DVKLLTSTAVWFGWTPS-FLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 DVKLL AV PS F F F+ G+L + I G + + Sbjct: 77 DVKLL---AVLMLAIPSHFAVFFLFLTACAGLLLI-------------IIGWLFYRQSIR 120 Query: 144 KNKIPYGIAISMGGLIS 160 + +PYGIAIS+G L + Sbjct: 121 EKGLPYGIAISVGFLTT 137 >gi|198282505|ref|YP_002218826.1| peptidase A24A domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665857|ref|YP_002424695.1| type IV pilus prepilin peptidase PilD [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247026|gb|ACH82619.1| peptidase A24A domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518070|gb|ACK78656.1| type IV pilus prepilin peptidase PilD [Acidithiobacillus ferrooxidans ATCC 23270] Length = 266 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 19/118 (16%) Query: 13 LIPPFCLVFAALS----DLFSAMIPNRVSIV-MLGSFLLTA---FLLGMDYELIALHLLV 64 L+P +A L+ DL + ++P+R++ ML LL F G+ + L L+ Sbjct: 104 LLPALVFTWALLALTMIDLETQLLPDRLTKPGMLAGLLLNGSALFWPGLAL-VTPLDALL 162 Query: 65 GLIV-----FIICFCFF---AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114 G+I+ +++ ++ + MGGGD+KLL W GW FL+ F+A LGG Sbjct: 163 GMIIGYGSLWLLATVYYRIAGRHGMGGGDLKLLGMIGAWLGWQAVFLT--LFIAALGG 218 >gi|172062957|ref|YP_001810608.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6] gi|171995474|gb|ACB66392.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6] Length = 159 Score = 37.4 bits (85), Expect = 0.81, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 7/150 (4%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 V L LV A+ DL + NR + + + A L A H+ + + Sbjct: 5 VQLTATLVLVSIAMQDLRERRVSNRAVLAFAMLYPVAAALGREGLAPFAGHVATAAAMLV 64 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + +GGGDVKL + +W G P L L V G + +L + Sbjct: 65 VFGALRHAGWLGGGDVKLAAAVFLWAG-PPLALPVLTIVGTSGAACGLAMLAGVARQRRV 123 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 P + +PYG+A++ GG ++ Sbjct: 124 ------APAHPMATRGVPYGVALAFGGALA 147 >gi|289192798|ref|YP_003458739.1| Peptidase A24A domain protein [Methanocaldococcus sp. FS406-22] gi|288939248|gb|ADC70003.1| Peptidase A24A domain protein [Methanocaldococcus sp. FS406-22] Length = 339 Score = 37.4 bits (85), Expect = 0.86, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 32/126 (25%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 S V++I L+ A+++D+ +IP++ +I M I ++L+VG Sbjct: 5 SVVYIINFILLILASITDIKERIIPHKYTIAM-----------------IIMNLVVGYYY 47 Query: 69 F----IICF------CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF-----LFFVAILG 113 F II F C MGGGDVKL T+ A F + SF+ + L+ +AI Sbjct: 48 FGFNAIIAFFSTLILCLILSVGMGGGDVKLFTALAPIFAYPNSFVFYIPKYILYLIAISM 107 Query: 114 GILSVF 119 I +VF Sbjct: 108 FIAAVF 113 >gi|227114874|ref|ZP_03828530.1| hypothetical protein PcarbP_18015 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 183 Score = 37.4 bits (85), Expect = 0.90, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 21/161 (13%) Query: 18 CLVFAALSDLFSAMIPNRVSIVML-------GSFLLTAFLLGMDYELIALHLLVGLI-VF 69 CL++ +DL I N+ +++L S +L + L M AL L G V Sbjct: 16 CLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQSGALDMLALQKALWALPGAAAVL 75 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ F F +G GDVKL++ +W G + F+ A+ GG+L++ + + + Sbjct: 76 VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLNTVPTA 134 Query: 130 IP--------IFGMFVPKSFL----MKNKIPYGIAISMGGL 158 + IF +P + IPYG+AI+ G + Sbjct: 135 VAMGIQTANRIFKSRLPMPPALPADLSQGIPYGVAIAFGAM 175 >gi|221197778|ref|ZP_03570824.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2M] gi|221204664|ref|ZP_03577681.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2] gi|221175521|gb|EEE07951.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2] gi|221181710|gb|EEE14111.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2M] Length = 166 Score = 37.4 bits (85), Expect = 0.93, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 6/117 (5%) Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC-FFAFN 79 F A SD+ +PN + + L L+AFL + + L +G+++ +I F FF Sbjct: 16 FVAASDVRVRRVPNSLVLGGLALAFLSAFLNANPFGISPLSATIGMLIGLIAFVPFFLLR 75 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 +MG D+K+ W G L +L+ VA L + +L M+ + PI ++ Sbjct: 76 VMGAADLKVFAVLGAWCG--AHALLWLWIVASLAAGIHALVL---MLVSRTPIRALW 127 >gi|126208039|ref|YP_001053264.1| flp operon protein B [Actinobacillus pleuropneumoniae L20] gi|126096831|gb|ABN73659.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 142 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 22/133 (16%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +DL +I NRV + +L + ++L+ Y L L ++ +I F F N++G G Sbjct: 22 TDLRYRLISNRVIMALLLVIIPFSYLM---YG--TLSWLPAVLCLVIGFVLFLLNVIGAG 76 Query: 85 DVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 DVKLL AV P SF F F+ G+L I I G + + Sbjct: 77 DVKLL---AVLMLAVPSSFAIFFLFLTACSGLL-------------IIIIGWLFYRQTIR 120 Query: 144 KNKIPYGIAISMG 156 + +PYGIAIS G Sbjct: 121 EKGLPYGIAISTG 133 >gi|307256576|ref|ZP_07538357.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864986|gb|EFM96888.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 131 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 22/133 (16%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +DL +I NRV + +L + ++L+ Y L L ++ +I F F N++G G Sbjct: 11 TDLRYRLISNRVIMALLLVIIPFSYLM---YG--TLSWLPAVLCLVIGFVLFLLNVIGAG 65 Query: 85 DVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 DVKLL AV P SF F F+ G+L I I G + + Sbjct: 66 DVKLL---AVLMLAVPSSFAIFFLFLTACSGLL-------------IIIIGWLFYRQTIR 109 Query: 144 KNKIPYGIAISMG 156 + +PYGIAIS G Sbjct: 110 EKGLPYGIAISTG 122 >gi|11498541|ref|NP_069769.1| hypothetical protein AF0936 [Archaeoglobus fulgidus DSM 4304] gi|2649660|gb|AAB90302.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 240 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 4/91 (4%) Query: 19 LVFAALSDLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII---CFC 74 L++A DL S ++PNRV ++L S +T + L + LI +++ G+ V ++ + Sbjct: 14 LLYACKLDLESRIVPNRVWKRMLLVSLPITVYQLFLGKHLIFEYMIAGIFVVMVIALSYA 73 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105 + GG D K + + AV F + P+F F Sbjct: 74 LYLIGAYGGADAKAIMALAVIFPFYPTFNGF 104 >gi|322831057|ref|YP_004211084.1| Prepilin peptidase [Rahnella sp. Y9602] gi|321166258|gb|ADW71957.1| Prepilin peptidase [Rahnella sp. Y9602] Length = 277 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 29/144 (20%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI----- 80 DL + ++P+R+++ +L + LL L G + + L G + + F +++ Sbjct: 142 DLATYLLPDRLTLPLLWAGLLVHSLYG---SVTLQNALYGAVAGYLALWFLYWSVKLVSG 198 Query: 81 ---MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 MG GD KLL + W GW L +L +A L GI VF L I Sbjct: 199 KEGMGYGDFKLLAALGAWVGW--QMLPYLCILAALAGI--VFTLVRVSI----------- 243 Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161 + M + P+G +++ G + Y Sbjct: 244 ---YKMSEQTPFGPCLALAGALIY 264 >gi|156975626|ref|YP_001446533.1| prepilin peptidase CpaA [Vibrio harveyi ATCC BAA-1116] gi|156527220|gb|ABU72306.1| hypothetical protein VIBHAR_03359 [Vibrio harveyi ATCC BAA-1116] Length = 147 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 8/79 (10%) Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 ++GGGDVKL+ + ++ T S L L FV I GGIL+V L + + +H+ G + Sbjct: 66 LGVLGGGDVKLIAAFSLSLP-TQSLLEALIFVGIYGGILAVIYL-ILLRPSHVTGEGD-I 122 Query: 138 PKSFLMKNKIPYGIAISMG 156 P+ L PYG+AI G Sbjct: 123 PQIGL-----PYGVAICCG 136 >gi|87199103|ref|YP_496360.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans DSM 12444] gi|87134784|gb|ABD25526.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans DSM 12444] Length = 166 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 17/105 (16%) Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS-FLSFLFFVAILGGIL 116 IA+ + + F++ FA +MGGGDVKLL++ A+W P F+ L +++LGG L Sbjct: 62 IAMQVGLAAATFLVLAGLFALRLMGGGDVKLLSALALWL--APGMFVKLLVIMSLLGGFL 119 Query: 117 S-VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + VF +T KIPYG+AI+ GLI+ Sbjct: 120 TIVFAAWHYTVTRR-------------RDAKIPYGVAIACAGLIT 151 >gi|218710409|ref|YP_002418030.1| hypothetical protein VS_2446 [Vibrio splendidus LGP32] gi|218323428|emb|CAV19605.1| hypothetical protein VS_2446 [Vibrio splendidus LGP32] Length = 176 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 1/103 (0%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L+ ++ D+ IPN++ I+ + L+ F ++ + L ++ F F+ Sbjct: 12 LIAVSVYDVEKHRIPNKILILFFVFYFLSMFNSNYTFDSFLMSLFGSVVFFCFGLLFYFL 71 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 M GDVKLL ++ GW L +F+ + G++ VF L Sbjct: 72 RAMSAGDVKLLGVVGMYLGWG-QLLDASYFILVSSGVVGVFYL 113 >gi|163814846|ref|ZP_02206234.1| hypothetical protein COPEUT_00996 [Coprococcus eutactus ATCC 27759] gi|158449785|gb|EDP26780.1| hypothetical protein COPEUT_00996 [Coprococcus eutactus ATCC 27759] Length = 169 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 18/163 (11%) Query: 11 VFLIPPFCLV-FAALSDLFSAMIPNR-VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 +FLIP V A ++D S IPN+ V++ ++ F+++A + G+ L L G ++ Sbjct: 15 IFLIPLIATVSMAVVTDFRSWKIPNKLVAVGLIQGFVVSAVVRGLPEGL--LSSAKGCVI 72 Query: 69 -FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV------FIL 121 +I + F +G GD+KLL + G + F+A GG++S+ FIL Sbjct: 73 PVVILYVLFLIKALGAGDIKLLAVAGSFVGLDIYRVMIYSFLA--GGVISIIYLLKEFIL 130 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164 + ITN + S + K ++ + AI +GG++ Y + Sbjct: 131 S---ITNRKKLSDR-TECSRVGKRRVHFSAAI-LGGILYYATT 168 >gi|225174802|ref|ZP_03728800.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1] gi|225169929|gb|EEG78725.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1] Length = 185 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 17/102 (16%) Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV------RMITNH 129 F F +G GDVK+L + G+ P + L AI+GG+ +++ + R+ T Sbjct: 68 FVFGGLGAGDVKMLGMIGAFTGY-PVVIQVLLVSAIVGGVFALYTMLRQGKMFKRLKTFF 126 Query: 130 IPIFGMFVPKSFLM----------KNKIPYGIAISMGGLISY 161 + IF + + KN IPYG+A+S+G +I Y Sbjct: 127 LGIFCAAAARKTVHMNNLDEKDAGKNAIPYGVALSVGVIIVY 168 >gi|24114271|ref|NP_708781.1| hypothetical protein SF3007 [Shigella flexneri 2a str. 301] gi|24053425|gb|AAN44488.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|281602357|gb|ADA75341.1| putative tight adherance operon protein [Shigella flexneri 2002017] Length = 155 Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 20/144 (13%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L+F + D+ +I +R +V+ L L L+A V ++ F F+ Sbjct: 26 LIFISWGDILLRIISHRYLLVLTVLIFLALILQHQKPNLVA-----AGSVLLVGFFLFSA 80 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 I+GGGDVKLLT + +AI L+ F++ + + + G+ Sbjct: 81 GIIGGGDVKLLTVLS---------------LAIDEHELANFLVAMTFCGALVVLAGLLFF 125 Query: 139 KSFLMKNKIPYGIAISMGGLISYP 162 + + +N +PY + IS+ L++YP Sbjct: 126 RKSIRENGVPYAVPISLAFLLTYP 149 >gi|90412178|ref|ZP_01220184.1| Hypothetical membrane protein [Photobacterium profundum 3TCK] gi|90326902|gb|EAS43287.1| Hypothetical membrane protein [Photobacterium profundum 3TCK] Length = 145 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 12/82 (14%) Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV-FILTVRMITNHIPIFG 134 F FNI+ GD KL ++ AV +S L+F ++ GG+++V +++ ++I P Sbjct: 65 FYFNIVAAGDGKLASAFAVALS-PQQLISALYFTSLFGGVVAVIYLIKYQLIQRSSP--- 120 Query: 135 MFVPKSFLMKNKIPYGIAISMG 156 +PYG+AI+ G Sbjct: 121 -------EKARGLPYGVAIACG 135 >gi|296110011|ref|YP_003616960.1| Peptidase A24A domain protein [Methanocaldococcus infernus ME] gi|295434825|gb|ADG13996.1| Peptidase A24A domain protein [Methanocaldococcus infernus ME] Length = 331 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 11/90 (12%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI-VFI 70 ++I F L+ A+++D+ +IP++ I M FL+ L + Y ++G+I FI Sbjct: 8 YIINFFILILASITDIKEKIIPHKYVIAM---FLIN---LPIGYYFFGFDAIIGMISTFI 61 Query: 71 ICFCFFAFNI-MGGGDVKLLTSTAVWFGWT 99 +C +I MGGGDVKL T+ A F + Sbjct: 62 LCLIL---SIGMGGGDVKLFTALAPIFSYD 88 >gi|313648076|gb|EFS12522.1| type IV leader peptidase family protein [Shigella flexneri 2a str. 2457T] Length = 147 Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 15/95 (15%) Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 V ++ F F+ I+GGGDVKLLT + +AI L+ F++ + Sbjct: 62 VLLVGFFLFSAGIIGGGDVKLLTVLS---------------LAIDEHELANFLVAMTFCG 106 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162 + + G+ + + +N +PY + IS+ L++YP Sbjct: 107 ALVVLAGLLFFRKSIRENGVPYAVPISLAFLLTYP 141 >gi|300788935|ref|YP_003769226.1| leader peptidase (prepilin peptidase)/N-methyltransferase [Amycolatopsis mediterranei U32] gi|299798449|gb|ADJ48824.1| leader peptidase (prepilin peptidase)/N-methyltransferase [Amycolatopsis mediterranei U32] Length = 206 Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 24/137 (17%) Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAF---LLGMDYELIALHLLVGLIVF--IICFCFF 76 AA D IP+R+S+ + G+ +L A + G D L L G V+ + + Sbjct: 70 AAAVDAVEHRIPDRLSLPLCGASILAAVGAAIAGHDVG-SGLRALAGGAVWGAALLVSYL 128 Query: 77 AFNIMGGGDVKLLTSTAV---WFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 G GDVKL S + WFGW +LGG L+ +ILT + Sbjct: 129 VTGQPGPGDVKLTPSVGILLGWFGWA----------WVLGGFLAAYILTAVA-----GVV 173 Query: 134 GMFVPKSFLMKNKIPYG 150 G+ + + + ++P G Sbjct: 174 GVLLRRYSFREGQVPMG 190 >gi|302391025|ref|YP_003826845.1| peptidase A24A prepilin type IV [Acetohalobium arabaticum DSM 5501] gi|302203102|gb|ADL11780.1| peptidase A24A prepilin type IV [Acetohalobium arabaticum DSM 5501] Length = 160 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 14/141 (9%) Query: 26 DLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLL-VGLIVFIICFCFFAFNIMGG 83 D+ +IPN ++ +ML ++ + G L +L L VGL +F+I F +G Sbjct: 16 DIKDKIIPNWLTFSLMLLGLIINLSIDGWSGLLFSLQGLGVGLAIFLIPFVLGG---LGA 72 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV-----RMITN---HIPIFGM 135 GDVKL+ G L L +AI+GGI+S+FIL RMI +P + Sbjct: 73 GDVKLVAGIGAVKGVKFVLLDSLV-IAIVGGIISLFILIQEKKLGRMIKKVIYRLPFKSL 131 Query: 136 FVPKSFLMKNKIPYGIAISMG 156 + + PYG+A++ G Sbjct: 132 SDREDQEGNDAFPYGVAVAFG 152 >gi|162421658|ref|YP_001604874.1| type IV prepilin peptidase family protein [Yersinia pestis Angola] gi|165925130|ref|ZP_02220962.1| type IV prepilin peptidase family [Yersinia pestis biovar Orientalis str. F1991016] gi|166008875|ref|ZP_02229773.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua str. E1979001] gi|167398990|ref|ZP_02304514.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|162354473|gb|ABX88421.1| type IV prepilin peptidase family [Yersinia pestis Angola] gi|165923330|gb|EDR40481.1| type IV prepilin peptidase family [Yersinia pestis biovar Orientalis str. F1991016] gi|165992214|gb|EDR44515.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua str. E1979001] gi|167051494|gb|EDR62902.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 93 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 15/95 (15%) Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 +++ ++ I + F FN+MGGGDVKL+T + S L+F+ + A++GG++ V L Sbjct: 7 IIIPIVALFIGYIIFHFNVMGGGDVKLITVLLLALTAEQS-LNFIIYTAVMGGVVMVVGL 65 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156 + + + K +PY +AI+ G Sbjct: 66 LINRVD--------------IQKRGVPYAVAITAG 86 >gi|51245389|ref|YP_065273.1| hypothetical protein DP1537 [Desulfotalea psychrophila LSv54] gi|50876426|emb|CAG36266.1| unknown protein [Desulfotalea psychrophila LSv54] Length = 191 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 22/161 (13%) Query: 18 CLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALH-LLVGLIVFIICFCF 75 L + ++DL + IPN +++ +ML + L+ L G L +L + G+ + +I Sbjct: 20 ALSVSTVTDLRARRIPNFITLSMMLIALLVHGLLSGFAGVLFSLQGIACGMGLLLIPHLL 79 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR---MITNH--- 129 MG GDVKLL + G +F +FL +AILGG+ S+ +L +R +IT Sbjct: 80 GG---MGAGDVKLLAAVGAALGAAHTFYAFL-VIAILGGLTSIVMLIIRSTCLITLQRMG 135 Query: 130 ---------IPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + + V +S L + IPYG I+ GG ++Y Sbjct: 136 NAFLAAFGGVGAAALRVDRSTLQREGIPYGAVIA-GGTLAY 175 >gi|15669025|ref|NP_247829.1| hypothetical protein MJ_0835.2 [Methanocaldococcus jannaschii DSM 2661] gi|3219922|sp|P81324|Y83C_METJA RecName: Full=Uncharacterized protein MJ0835.2 gi|2826330|gb|AAB98835.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 339 Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 32/126 (25%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 + V++I L+ AA++D+ +IP++ +I M I ++L+VG Sbjct: 5 NVVYIINFILLLLAAITDIKERIIPHKYTIAM-----------------IIINLVVGYYY 47 Query: 69 F----IICF------CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF-----LFFVAILG 113 F II F C MGGGDVKL T+ A F + SF+ + L+ +AI Sbjct: 48 FGFNAIIAFFSTLILCLILSIGMGGGDVKLFTALAPIFAYPNSFVFYIPKYILYLIAISM 107 Query: 114 GILSVF 119 I +VF Sbjct: 108 FIAAVF 113 >gi|323529416|ref|YP_004231568.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001] gi|323386418|gb|ADX58508.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001] Length = 176 Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 14/150 (9%) Query: 19 LVFAALSDLFSAMIPNR-VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC-FF 76 +V AA +DL IPN V + G+ L+ +L G A+ L G +V + F F+ Sbjct: 19 VVAAASTDLQCRRIPNLLVGAGLFGALLVQCWLKGTGAG--AMAWLTGAVVGLALFLPFY 76 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN-------- 128 M GDVKLL W G F + L I G + V I+ + Sbjct: 77 LVRGMAAGDVKLLAMVGAWIGPLLVFYAALATCVIGGAWMLVLIVRRHQLGKVWANLRVI 136 Query: 129 -HIPIFGMFVPKSFLMK-NKIPYGIAISMG 156 H + G + + +PYG+AI+ G Sbjct: 137 AHPALQGSGSARDSIDSVGSVPYGVAIAAG 166 >gi|283779852|ref|YP_003370607.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068] gi|283438305|gb|ADB16747.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068] Length = 189 Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust. Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 25/158 (15%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYELIALHLLVGLIVFIICFCF 75 L+ AA+ D F +PN ++ F+++ ++ + +E + L+ ++ + Sbjct: 25 LILAAVIDGFELKVPNWITF----PFIISGWIYSVAAFGWEGLGWSLVGTVVGLALLLPA 80 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV-FILTVRMITNHIPIFG 134 ++ MG GDVKLL W T +F +F A++G + +V +L R H F Sbjct: 81 YSIGGMGAGDVKLLAGVGAWMYGTHTFYAFC-ASAVVGALCAVIMVLAKRAWKKHSDQFW 139 Query: 135 MFVPKSFLMKNK----------------IPYGIAISMG 156 + + + ++ N +PYGI I++G Sbjct: 140 LILNEIMVIGNPEKLAVIAAKRKPSMLLLPYGIPIAIG 177 >gi|171317110|ref|ZP_02906313.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5] gi|171097744|gb|EDT42571.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5] Length = 166 Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 5/116 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +FSAVFL+ A SD+ S I N + + L S +AF + + LVG+ Sbjct: 5 IFSAVFLV---WATLVAASDIRSRRISNGLVLAGLASGFASAFFDAGPFGISLPQALVGM 61 Query: 67 IVFII-CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 ++ ++ F FF MG DVK+ W G S L +++ G+ +V ++ Sbjct: 62 LIGLVGLFPFFLLRAMGAADVKVFAVLGAWCG-AHSLLGLWVIASLVAGLHAVVLM 116 >gi|84385707|ref|ZP_00988738.1| putative membrane protein [Vibrio splendidus 12B01] gi|84379687|gb|EAP96539.1| putative membrane protein [Vibrio splendidus 12B01] Length = 147 Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 14/93 (15%) Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVFILTVR 124 LI+F + F + NI+GGGDVKL+ A++ G P + + L ILGG+ + + Sbjct: 59 LIIFCVFFMLWMMNIIGGGDVKLI--GALFIGIAPEYSIIALATAGILGGVQILLMWVSS 116 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157 +IT+ P N IPY I + + G Sbjct: 117 LITHKDP-----------FSNGIPYTIPLGLSG 138 >gi|320170355|gb|EFW47254.1| hypothetical protein CAOG_05198 [Capsaspora owczarzaki ATCC 30864] Length = 1753 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 19/111 (17%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 FCL F +P+ + +V+L L +F L + EL+A V I C Sbjct: 1555 FCLRF----------VPSTIVVVVLFFLTLNSFCLHLSSELLASGTAV-----ISCNALL 1599 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 ++ L T T W GW+ S + L+F +++F+L + +T Sbjct: 1600 GPTVVSPSTFSLTTGTKQWNGWSSSLSTGLYFAQ----NVALFLLVLYFVT 1646 >gi|50119732|ref|YP_048899.1| hypothetical protein ECA0787 [Pectobacterium atrosepticum SCRI1043] gi|49610258|emb|CAG73701.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043] Length = 183 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 21/161 (13%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLL---TAFLLGMDYELIALH-----LLVGLIVF 69 CL++ +DL I N+ +++L +L + L + +AL L V Sbjct: 16 CLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQSGGLDRLALQKTLWALPGAAAVL 75 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI--- 126 ++ F F +G GDVKL++ +W G + F+ A+ GG+L++ + + + Sbjct: 76 VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLNTVPTA 134 Query: 127 -------TNHIPIFGMFVPKSFL--MKNKIPYGIAISMGGL 158 TN I + +P + + IPYG+AI+ G + Sbjct: 135 VAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAM 175 >gi|330890705|gb|EGH23366.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. mori str. 301020] Length = 290 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + +PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESSMPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|319941904|ref|ZP_08016225.1| hypothetical protein HMPREF9464_01444 [Sutterella wadsworthensis 3_1_45B] gi|319804557|gb|EFW01427.1| hypothetical protein HMPREF9464_01444 [Sutterella wadsworthensis 3_1_45B] Length = 151 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 19/132 (14%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF-NIMGG 83 SDL IPN ++++ + ++ A++ G + L + + ++ F A+ ++G Sbjct: 28 SDLTKREIPNAAAVLLGLTAVVDAWIGGSPLQAGWLGCIS---ILLVGFPVSAYLGLIGA 84 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KLL + A+W + L L A GG+L++ L + ++ Sbjct: 85 GDIKLLAAAALWT--SARTLDLLLITAWAGGVLALLYLCLNLVRTR-------------R 129 Query: 144 KNKIPYGIAISM 155 +IPYG+A+S+ Sbjct: 130 TTEIPYGVAVSL 141 >gi|134295592|ref|YP_001119327.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4] gi|134138749|gb|ABO54492.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4] Length = 166 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC-FFAF 78 + A SD+ IPN + + + +A + + LH L+G++V + C FF Sbjct: 15 ILVAASDIRYRRIPNSLVFGGVAAAFASALCGASPFGIAPLHALLGMLVGMACLLPFFVA 74 Query: 79 NIMGGGDVKLLTSTAVWFG 97 +MG DVK+ + W G Sbjct: 75 RVMGAADVKVFAALGAWCG 93 >gi|332765440|gb|EGJ95658.1| putative membrane protein [Shigella flexneri 2930-71] Length = 110 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 15/95 (15%) Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 V ++ F F+ I+GGGDVKLLT + +AI L+ F++ + Sbjct: 25 VLLVGFFLFSAGIIGGGDVKLLTVLS---------------LAIDEHELANFLVAMTFCG 69 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162 + + G+ + + +N +PY + IS+ L++YP Sbjct: 70 ALVVLAGLLFFRKSIRENGVPYAVPISLAFLLTYP 104 >gi|296122070|ref|YP_003629848.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776] gi|296014410|gb|ADG67649.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776] Length = 218 Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 48/106 (45%), Gaps = 20/106 (18%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M MVF A L+ AA +DL I N ++ L AF LG Y+ +A Sbjct: 4 MNPQTMVFLAGVLV---LTTTAAYTDLRYFRIYNWLT--------LPAFALGWIYQ-VAF 51 Query: 61 HLLVGL--------IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW 98 + L GL I F + F FA GGGD KL+ + +VW GW Sbjct: 52 YGLPGLADAGLGFAIGFGLFFLLFAIGASGGGDTKLMGALSVWLGW 97 >gi|103488243|ref|YP_617804.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256] gi|98978320|gb|ABF54471.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256] Length = 163 Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 13/132 (9%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE----LIALHLLVGLIVFIICFCFFAFNI 80 SDL IPN + +++ F++ +LLG + H + L+V ++ F F Sbjct: 22 SDLRYRRIPNLIPALIVLLFIV-GWLLGFPFTGPWWAHGFHFVAALLVGML---LFRFGW 77 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI---PIFGMFV 137 GGGD KL + A+WF ++ + L L FV G + V + + ++ I P Sbjct: 78 FGGGDAKLYAACALWFSFSDALL--LMFVTTASGAVIVLVRALAIVARSIFGSPGAPPDG 135 Query: 138 PKSFLMKNKIPY 149 P+ IPY Sbjct: 136 PRQKRAPRTIPY 147 >gi|258593733|emb|CBE70074.1| Type 4 prepilin-like proteins leader peptide processing enzyme [NC10 bacterium 'Dutch sediment'] Length = 249 Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 18/98 (18%) Query: 65 GLIVFIICFCFFAFNI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 GL+ + + AF MGGGDV LL+ + GW +SF V I G LS+ ++ Sbjct: 152 GLVYLVAVYAEVAFQQESMGGGDVNLLSMIGAFLGWRLMLVSFGVAV-IAGACLSLALIA 210 Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 R+++ K++IP+G +++G +++ Sbjct: 211 SRVLSR---------------KDRIPFGPFLALGAVVA 233 >gi|46143343|ref|ZP_00135452.2| COG4960: Flp pilus assembly protein, protease CpaA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 131 Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 22/133 (16%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +DL +I NRV + +L + ++L+ Y L L ++ +I F F N++G G Sbjct: 11 TDLRYRLISNRVIMALLLVIIPFSYLM---YG--TLSWLPAVLWLVIGFVLFLLNVIGAG 65 Query: 85 DVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 DVKLL AV P SF F F+ G+L I I G + + Sbjct: 66 DVKLL---AVLMLAVPSSFAIFFLFLTACTGLL-------------IIIIGWLFYRQTIR 109 Query: 144 KNKIPYGIAISMG 156 + +PYGIAIS G Sbjct: 110 EKGLPYGIAISTG 122 >gi|87312295|ref|ZP_01094393.1| type IV prepilin peptidase CpaA-like protein [Blastopirellula marina DSM 3645] gi|87284999|gb|EAQ76935.1| type IV prepilin peptidase CpaA-like protein [Blastopirellula marina DSM 3645] Length = 238 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 33/165 (20%) Query: 18 CLVFAALSDLFSAMIPNRVS---IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 L+ AA+ D F +PN ++ I+ ++ + AF +E + +L ++ + Sbjct: 73 TLIVAAVIDGFQLKVPNWITFPFIIAGWTYSVIAF----GWEGLGWSMLGTVVGLALLLP 128 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV---------------- 118 +A MG GDVKLL W T +F +F A++G +L++ Sbjct: 129 AYAIGGMGAGDVKLLAGVGAWMYGTHTFYAFC-ISAVVGAVLAIGMVLFRGAWEKHSNQA 187 Query: 119 -----FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 ILT+R I P L+ PYGI I++G + Sbjct: 188 WMILNEILTIRDPNQLSAIAAERKPTMMLL----PYGIPIAIGSI 228 >gi|187250653|ref|YP_001875135.1| type II secretion system subunit O [Elusimicrobium minutum Pei191] gi|186970813|gb|ACC97798.1| Type II secretion system subunit [Elusimicrobium minutum Pei191] Length = 260 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 27/165 (16%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM----LGSFLLTAFLLGMDYELIALHL 62 +++ V L+ + L+ +++ D+ +IP+R SI + L F G ++ L Sbjct: 98 IWTGVVLVVVYSLIISSVIDIKIMIIPDRFSIGLIVWGLAFFWCNPNFSGTTLQMFGQSL 157 Query: 63 L---VG----LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115 L VG L V ++ + F MGGGD+KL+ GW ++ L ++G + Sbjct: 158 LGAAVGFGGLLAVALLGYALFRKEAMGGGDIKLMGGVGALLGWQ-GVITTLVIACLIGLV 216 Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 S+F++ V K + IP+G +S G L++ Sbjct: 217 YSIFLM---------------VTKRADKGSAIPFGPFLSFGALVN 246 >gi|84387248|ref|ZP_00990269.1| hypothetical protein V12B01_22501 [Vibrio splendidus 12B01] gi|84377895|gb|EAP94757.1| hypothetical protein V12B01_22501 [Vibrio splendidus 12B01] Length = 179 Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L+ ++ D+ IPN++ I+ L + L+ F +++ + + ++ F + Sbjct: 15 LIAVSVYDVEKHRIPNKILILFLFVYFLSMFNRNYSFDVFLMSFVGFVVFFCFGLLLYFL 74 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI-TNHIPIFGMFV 137 M GDVKLL ++ GW L +F+ + G++ F L +N++ I G F Sbjct: 75 RAMSAGDVKLLGIVGMYLGWG-QLLGASYFILLSAGVIGTFYLLYNFSNSNNLSIRGYFE 133 Query: 138 PK 139 K Sbjct: 134 NK 135 >gi|328952533|ref|YP_004369867.1| Prepilin peptidase [Desulfobacca acetoxidans DSM 11109] gi|328452857|gb|AEB08686.1| Prepilin peptidase [Desulfobacca acetoxidans DSM 11109] Length = 260 Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 24/153 (15%) Query: 16 PFCLVFAALS--DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 PF L LS DL ++P+ +++ +G LL++ + EL LVG + F Sbjct: 103 PFALALLTLSVIDLEQGLLPDVITLPGIGFGLLSSLVF---QELSFFSALVGALTGAAVF 159 Query: 74 CFFAF--------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 A+ MGGGDVKLL + G L ++ F++ G L+ IL +R Sbjct: 160 QGIAWIYAKWAGKQGMGGGDVKLLAMIGAFLG--IQSLPWVIFLSASLGTLTGIILVLRK 217 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + PK L IP+G +++GGL Sbjct: 218 GRH---------PKETLRSLPIPFGPFLAIGGL 241 >gi|323694366|ref|ZP_08108539.1| hypothetical protein HMPREF9475_03403 [Clostridium symbiosum WAL-14673] gi|323501606|gb|EGB17495.1| hypothetical protein HMPREF9475_03403 [Clostridium symbiosum WAL-14673] Length = 180 Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 10/137 (7%) Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--------YELIALHLLVGLIVFIICF 73 +AL D +PN + + +F + F+ G + +IAL + II F Sbjct: 13 SALCDFRKGRVPNVLILFGTAAFGIAGFIRGPSPGDGSGAVFTVIALFFIRTFFTVIIFF 72 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF-ILTVRMITNHIPI 132 F F +MG GD+K++ A + G + +F+ + S+F +L ++ I Sbjct: 73 PLFLFRMMGAGDIKVMAVIAGYMGMDRG-VEIIFYGLAAAAVWSLFYMLKQHILAERIKY 131 Query: 133 FGMFVPKSFLMKNKIPY 149 F ++ F + +PY Sbjct: 132 FLNYIKHLFQSEQILPY 148 >gi|330966321|gb|EGH66581.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 290 Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLMGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|323486493|ref|ZP_08091816.1| hypothetical protein HMPREF9474_03567 [Clostridium symbiosum WAL-14163] gi|323400196|gb|EGA92571.1| hypothetical protein HMPREF9474_03567 [Clostridium symbiosum WAL-14163] Length = 180 Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 10/137 (7%) Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--------YELIALHLLVGLIVFIICF 73 +AL D +PN + + +F + F+ G + +IAL + II F Sbjct: 13 SALCDFRKGRVPNVLILFGTAAFGIAGFIRGPSPGDGSGAVFTVIALFFIRTFFTVIIFF 72 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF-ILTVRMITNHIPI 132 F F +MG GD+K++ A + G + +F+ + S+F +L ++ I Sbjct: 73 PLFLFRMMGAGDIKVMAVIAGYMGMDRG-VEIIFYGLAAAAVWSLFYMLKQHILAERIKY 131 Query: 133 FGMFVPKSFLMKNKIPY 149 F ++ F + +PY Sbjct: 132 FLNYIKHLFQSEQILPY 148 >gi|225872752|ref|YP_002754209.1| type IV prepilin leader peptidase family protein [Acidobacterium capsulatum ATCC 51196] gi|225791712|gb|ACO31802.1| type IV prepilin leader peptidase family protein [Acidobacterium capsulatum ATCC 51196] Length = 191 Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 16/101 (15%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-----------MITNH 129 MG GDVKL+T+ A G + L AI GG++++ + R M+ +H Sbjct: 90 MGAGDVKLMTAVACVAG-NHFVIELLVTTAIAGGVMALGLALARGRFKQTLGNVAMLMSH 148 Query: 130 IPIFGMFVPKSFLMKN----KIPYGIAISMGGLISYPDSYL 166 G+ ++N ++PYG+AI+ G + + +Y+ Sbjct: 149 HRHAGLQPHPELNVRNQQSLRLPYGLAIAAGCIFTLASTYV 189 >gi|328952517|ref|YP_004369851.1| peptidase A24A prepilin type IV [Desulfobacca acetoxidans DSM 11109] gi|328452841|gb|AEB08670.1| peptidase A24A prepilin type IV [Desulfobacca acetoxidans DSM 11109] Length = 168 Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 MGGGDVKLL + W G F FL + A+ GGI S+ +L ++ Sbjct: 74 MGGGDVKLLAALGAWVGPGRVFNIFL-YAALAGGIASIIMLALQ 116 >gi|307263191|ref|ZP_07544812.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871553|gb|EFN03276.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 131 Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 20/132 (15%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +DL +I NRV + +L + ++L+ Y L L ++ +I F F N +G G Sbjct: 11 TDLRYRLISNRVIMALLLVIIPFSYLM---YG--TLSWLPAVLCLVIGFVLFLLNAIGAG 65 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVKLLT + +P + FLF A G +L I G + + + Sbjct: 66 DVKLLTVLMLAIP-SPLAIFFLFLTACSGLLLI--------------IIGWLFYRKTIRE 110 Query: 145 NKIPYGIAISMG 156 +PYGIAIS G Sbjct: 111 KGLPYGIAISTG 122 >gi|66044051|ref|YP_233892.1| prepilin peptidase [Pseudomonas syringae pv. syringae B728a] gi|63254758|gb|AAY35854.1| Prepilin peptidase [Pseudomonas syringae pv. syringae B728a] Length = 290 Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQVLPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|300697745|ref|YP_003748406.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia solanacearum CFBP2957] gi|299074469|emb|CBJ54019.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia solanacearum CFBP2957] Length = 183 Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 19/152 (12%) Query: 25 SDLFSAMIPNR-VSIVMLGSFLLTAF----LLGMDYELIALHLLVGLIVFIICFCFFAFN 79 SDL S +PN V++ ++ S +L F L D+ + L + L F+ +A Sbjct: 23 SDLRSRRVPNWLVAVGLVLSIVLVKFGTVMALAYDWRDVWLGGAIALASFL---PLYALG 79 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV-- 137 MG GDVK T + GW ++ ++L G+ ++ IL +R + P M + Sbjct: 80 WMGAGDVKFFTVAGLLAGWH-GLVAIWLVSSVLAGVHALAILLLRRVDASAPSAWMLMRV 138 Query: 138 -------PKSFLMKNKIPYGIAISMGGLISYP 162 + IPY +++ GL+S P Sbjct: 139 CPALARWDPGHAGRRGIPYAAYMAI-GLLSLP 169 >gi|257484000|ref|ZP_05638041.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013019|gb|EGH93075.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 290 Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|85705160|ref|ZP_01036260.1| membrane protein, putative [Roseovarius sp. 217] gi|85670482|gb|EAQ25343.1| membrane protein, putative [Roseovarius sp. 217] Length = 166 Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 19/159 (11%) Query: 9 SAVFLIP---PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLL 63 +A++ +P P C V+ A SDL IPN + ++G FL+ L DY HL Sbjct: 9 AALWFLPFVLPVC-VWVAWSDLSRMKIPNTAVLTLVGIFLVVGLIALPISDYPWRLAHLA 67 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTA--VWFGWTPSFLSFLFFVAILGGILSVFIL 121 V L+ I A +MG GD K + + A V G + L +F +LG ++ ++ Sbjct: 68 VMLVAGI---AMNAAGLMGAGDAKFIAAAAPFVALG-DAATLCLIFAATLLGAFVTHRVI 123 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + P + +S+ K P G A +GG ++ Sbjct: 124 KYSPLRRLAPDW-----QSWNTGKKFPMGFA--LGGTLA 155 >gi|323495635|ref|ZP_08100706.1| type IV leader peptidase [Vibrio sinaloensis DSM 21326] gi|323319270|gb|EGA72210.1| type IV leader peptidase [Vibrio sinaloensis DSM 21326] Length = 134 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 17/133 (12%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +DL ++ N+ +++ G + FL +HL+ +V I C + + G G Sbjct: 11 NDLQHRVVKNKSVLLLAGILAFSIFLFDSK-----IHLIQASLVLISGMCLWKVGVFGAG 65 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 D+KL + A++ S L LF + ++GG+ ++ L +R H+ + Sbjct: 66 DIKLASVFAIFIAPDYSLL-VLFLMLVIGGVEALLYLLIRTTYPHL-----------IRH 113 Query: 145 NKIPYGIAISMGG 157 IP+ I I + G Sbjct: 114 GGIPFAIPIVISG 126 >gi|221213142|ref|ZP_03586118.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD1] gi|221167355|gb|EED99825.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD1] Length = 166 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 6/113 (5%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC-FFAFNIMGG 83 SD+ +PN + + L L+AFL + + L +G+++ +I F FF +MG Sbjct: 20 SDVRVRRVPNSLVLGGLALAFLSAFLNANPFGISPLSATIGMLIGLIAFVPFFLLRVMGA 79 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 D+K+ W G L +L+ VA L + +L M+ + PI ++ Sbjct: 80 ADLKVFAVLGAWCG--AHALLWLWIVASLAAGIHALVL---MLVSRTPIRALW 127 >gi|254488438|ref|ZP_05101643.1| peptidase A24A, prepilin type IV [Roseobacter sp. GAI101] gi|214045307|gb|EEB85945.1| peptidase A24A, prepilin type IV [Roseobacter sp. GAI101] Length = 164 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 5/91 (5%) Query: 4 SKMVFSAVFLIP---PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 S V++A++ +P P CL + A +D+ S I N I + F++ ++ + +E Sbjct: 2 SITVYAALWFLPFVLPLCL-YTAYTDIASMRITNPTVITLAAVFVIIGPVV-LPFETYLW 59 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTS 91 HLL +I ++ A +MG GD K + + Sbjct: 60 HLLAMVIALVVGIILNAGGVMGAGDAKFIAA 90 >gi|330987705|gb|EGH85808.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. lachrymans str. M301315] Length = 290 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|283787706|ref|YP_003367571.1| prepilin peptidase TadV [Citrobacter rodentium ICC168] gi|282951160|emb|CBG90851.1| putative prepilin peptidase TadV [Citrobacter rodentium ICC168] Length = 132 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 20/132 (15%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +DLF I N+ +++L L++ + Y + ++ + ++ ++ F +F+++G G Sbjct: 8 TDLFYRKIKNKTVVLILIVSLVSGII---QYGIPSI--IFPCVILLVGFLLSSFSLVGAG 62 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVKLL + + + L F+ A L G+L V IP+ + + K K Sbjct: 63 DVKLLVALSFSLS-SEDILRFITTTA-LCGLLVV-----------IPVIYICIVKR--KK 107 Query: 145 NKIPYGIAISMG 156 +PYGIAISMG Sbjct: 108 TTVPYGIAISMG 119 >gi|71735543|ref|YP_273100.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556096|gb|AAZ35307.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 290 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|330977426|gb|EGH77373.1| prepilin peptidase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 290 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|330900442|gb|EGH31861.1| prepilin peptidase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 290 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|320326052|gb|EFW82109.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. glycinea str. B076] gi|320330217|gb|EFW86202.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. glycinea str. race 4] gi|330880436|gb|EGH14585.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. glycinea str. race 4] Length = 290 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|289674984|ref|ZP_06495874.1| prepilin peptidase [Pseudomonas syringae pv. syringae FF5] Length = 290 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|237802034|ref|ZP_04590495.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024890|gb|EGI04946.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 290 Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|302189196|ref|ZP_07265869.1| prepilin peptidase [Pseudomonas syringae pv. syringae 642] Length = 290 Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|298485507|ref|ZP_07003590.1| Leader peptidase (Prepilin peptidase) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159971|gb|EFI01009.1| Leader peptidase (Prepilin peptidase) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 290 Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|23098072|ref|NP_691538.1| leader peptide processing enzyme [Oceanobacillus iheyensis HTE831] gi|22776297|dbj|BAC12573.1| leader peptide processing enzyme (late competence protein) [Oceanobacillus iheyensis HTE831] Length = 251 Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 16/139 (11%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82 +SD +IPN++ + L F++ LL +D I + MG Sbjct: 114 CISDFIYMVIPNKLLLFFLPIFIILRLLLPLDPWWSMFTGAAIGFGIIFLIILISRGGMG 173 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142 GD+KLL + G L+F F I+G ++S+ +L+V +I + P Sbjct: 174 AGDMKLLGLAGIVLGVEKIILAF-FLACIIGSVISIVLLSVHLIQRNKP----------- 221 Query: 143 MKNKIPYGIAISMGGLISY 161 P+G I++G LISY Sbjct: 222 ----FPFGPFIAIGILISY 236 >gi|330960770|gb|EGH61030.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. maculicola str. ES4326] Length = 290 Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ +R + + PI FG ++ Sbjct: 209 MGHGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRIRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|289650991|ref|ZP_06482334.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. aesculi str. 2250] Length = 290 Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|170701160|ref|ZP_02892133.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10] gi|170133941|gb|EDT02296.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10] Length = 180 Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 22/163 (13%) Query: 16 PFCL----VFAALSDLFSAMIPNR-VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 P C+ + AA +D+ S IPNR V++ ++G+ + L G+ +A F Sbjct: 12 PLCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCALHGIQAGALAWLAGA-ATGFG 70 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFILTVRMITN 128 + F+ M GDVKL+ + W G +F L F V +G I +L RM Sbjct: 71 LLLPFYLLRGMAAGDVKLMLAIGAWVGAQMTFYIVLATFLVGGIGAI-GFALLRGRMRQM 129 Query: 129 HIPIFGMFV-------------PKSFLMKNKIPYGIAISMGGL 158 ++ + P +PYG+AI+ G L Sbjct: 130 CANVWALIAHRSTGAYAGATDGPVEVASVGALPYGVAIAAGTL 172 >gi|256832572|ref|YP_003161299.1| peptidase A24A domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686103|gb|ACV08996.1| peptidase A24A domain protein [Jonesia denitrificans DSM 20603] Length = 274 Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 14/114 (12%) Query: 26 DLFSAMIPNRVSI----VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81 DL + +PN++ + V+ L+G ++ + L GLI++I+ F M Sbjct: 131 DLDTHKLPNKIVLPAYPVVAVLVCFATLLMGWEWTSVIRAALGGLILYILYFVLCVIGGM 190 Query: 82 GGGDVK---LLTSTAVWFGWTPSFL---SFLFFVAILGGILSVFILTVRMITNH 129 G GDVK LL + W GW S+L FL FV LGG+ ++ +L +R + Sbjct: 191 GFGDVKLAGLLGISLGWLGW--SYLIVGGFLPFV--LGGLYAIVLLVLRRVGRK 240 >gi|190149867|ref|YP_001968392.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914998|gb|ACE61250.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 142 Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 20/132 (15%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +DL +I NRV + +L + ++L+ Y L L ++ +I F F N +G G Sbjct: 22 TDLRYRLISNRVIMALLLVIIPFSYLM---YG--TLSWLPAVLCLVIGFVLFLLNAIGAG 76 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVKLLT + +P + FLF A G +L I G + + + Sbjct: 77 DVKLLTVLMLAIP-SPLAIFFLFLTACSGLLLI--------------IIGWLFYRKTIRE 121 Query: 145 NKIPYGIAISMG 156 +PYGIAIS G Sbjct: 122 KGLPYGIAISTG 133 >gi|149188848|ref|ZP_01867138.1| Hypothetical membrane protein [Vibrio shilonii AK1] gi|148837268|gb|EDL54215.1| Hypothetical membrane protein [Vibrio shilonii AK1] Length = 113 Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 14/83 (16%) Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSF--LFFVAILGGILSVFILTVRMITNHIPIF 133 F F MGGGDVKL+ A+ PS ++ L+ I GG+L+V L+ F Sbjct: 33 FYFGWMGGGDVKLIAILALAL---PSVITVVALWLTMIFGGVLAVARLSQYR-------F 82 Query: 134 GMFVPKSFLMKNKIPYGIAISMG 156 + K + +PYG+AISMG Sbjct: 83 SLISAKK--DQRGLPYGVAISMG 103 >gi|330973677|gb|EGH73743.1| prepilin peptidase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 290 Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|218133640|ref|ZP_03462444.1| hypothetical protein BACPEC_01509 [Bacteroides pectinophilus ATCC 43243] gi|217991015|gb|EEC57021.1| hypothetical protein BACPEC_01509 [Bacteroides pectinophilus ATCC 43243] Length = 256 Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 8/68 (11%) Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI---TNHIPIFGM 135 + GGGD+KL+ + ++ GW L+FL G IL I +VRM NH+ FG Sbjct: 177 DCFGGGDIKLMAAAGLFLGWKCIILAFL-----AGCILGAVIHSVRMRMSGDNHMLAFGP 231 Query: 136 FVPKSFLM 143 ++ ++ Sbjct: 232 YLAAGIMI 239 >gi|330872528|gb|EGH06677.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 290 Score = 35.0 bits (79), Expect = 4.4, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|213970188|ref|ZP_03398319.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato T1] gi|301385924|ref|ZP_07234342.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato Max13] gi|302063131|ref|ZP_07254672.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato K40] gi|302134157|ref|ZP_07260147.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925069|gb|EEB58633.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato T1] Length = 290 Score = 35.0 bits (79), Expect = 4.4, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|289626921|ref|ZP_06459875.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330867359|gb|EGH02068.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 290 Score = 35.0 bits (79), Expect = 4.4, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AITGWIALLWGGQIT--DSYM 284 >gi|28868144|ref|NP_790763.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato str. DC3000] gi|28851381|gb|AAO54458.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato str. DC3000] gi|331018825|gb|EGH98881.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 290 Score = 35.0 bits (79), Expect = 4.4, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFVPK 139 MG GD KLL W GW L+ L +++G +L V ++ VR + + PI FG ++ Sbjct: 209 MGYGDFKLLAMLGAWGGWQILPLTIL-LSSLVGAVLGVIMMRVRRVESGTPIPFGPYL-- 265 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYL 166 I IA+ GG I+ DSY+ Sbjct: 266 ------AIAGWIALLWGGQIT--DSYM 284 >gi|323493937|ref|ZP_08099054.1| hypothetical protein VIBR0546_01886 [Vibrio brasiliensis LMG 20546] gi|323311878|gb|EGA65025.1| hypothetical protein VIBR0546_01886 [Vibrio brasiliensis LMG 20546] Length = 152 Score = 35.0 bits (79), Expect = 4.5, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 18/159 (11%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M ++ + +I C + +SD I NR+ +++ + + AF G + + + Sbjct: 1 MNLDNIIAVTIVIINIACAFHSCISDHQHRTISNRICKLLIITNTIAAFYYGYGIQSVTI 60 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVF 119 ++ I+ I + G GD+KLL + +V G P L+ L V ++GG+ V Sbjct: 61 TSVIFFILII----IWLIGAFGAGDIKLLCAFSV--GIKPELTLACLVLVGLIGGLQLVV 114 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + + ++T K+ + + IPYGI IS+ G+ Sbjct: 115 MFLIGLMT-----------KTNIFEKGIPYGIPISISGV 142 >gi|288869776|ref|ZP_06409495.1| conserved hypothetical protein [Methanobrevibacter smithii DSM 2374] gi|288860463|gb|EFC92761.1| conserved hypothetical protein [Methanobrevibacter smithii DSM 2374] Length = 223 Score = 35.0 bits (79), Expect = 4.5, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Query: 67 IVFIICFCFFAFNIMGGGDVKLLT--STAVWFGWTPSFLS 104 + +II F F+ I GGGDVKLLT +T + FG +FL+ Sbjct: 3 VTYIITFLFWKLKIWGGGDVKLLTAIATVIPFGINLNFLN 42 >gi|83338398|gb|ABC11883.1| PilD [Aliivibrio fischeri] Length = 295 Score = 35.0 bits (79), Expect = 4.6, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 13/118 (11%) Query: 17 FCLVFAALS--DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG-----LIVF 69 F LV AL+ D+ + ++P+++++ +L S L A + L+ +VG LI++ Sbjct: 140 FTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWNSVSLV--DSVVGAMAGYLILW 197 Query: 70 IICFCF---FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 I +CF MG GD KLL + W GW L + +++G I+ V +LT + Sbjct: 198 SIYWCFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-IILLSSVVGAIIGVIMLTAQ 254 >gi|257784114|ref|YP_003179331.1| peptidase A24A prepilin type IV [Atopobium parvulum DSM 20469] gi|257472621|gb|ACV50740.1| peptidase A24A prepilin type IV [Atopobium parvulum DSM 20469] Length = 162 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 12/105 (11%) Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA---- 77 A++SD+ IPNR+ I+++ + + + E+I L L F+IC Sbjct: 13 ASISDMRDRTIPNRIPIMLVFLWPIWLAVNKNRAEMIMSSLWSEL--FVICVLILVSIVT 70 Query: 78 -----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117 + +GGGD+KL+ ST ++ +F+ FLF ILG + S Sbjct: 71 KFIGHMSSIGGGDIKLILSTCLYLEIKETFV-FLFLANILGVMFS 114 >gi|170022936|ref|YP_001719441.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis YPIII] gi|169749470|gb|ACA66988.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis YPIII] Length = 140 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 26/141 (18%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH---LLVGLIVFIICFCF 75 L+F SD+ +I N+ I S A +L L+ H +++ ++ I + Sbjct: 16 LLFVCYSDIRHRIISNKFVI----SIACNAIIL----SLVTHHTVSIIIPIVALFIGYII 67 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 F FN+MGGGDVKL+T+ + S L+F+ + A++GG++ V L + + Sbjct: 68 FHFNVMGGGDVKLITALLLALTAEQS-LNFIIYTAVMGGVVMVVGLLINRVD-------- 118 Query: 136 FVPKSFLMKNKIPYGIAISMG 156 + K +PY +AI+ G Sbjct: 119 ------IQKRGVPYAVAITAG 133 >gi|319789518|ref|YP_004151151.1| Prepilin peptidase [Thermovibrio ammonificans HB-1] gi|317114020|gb|ADU96510.1| Prepilin peptidase [Thermovibrio ammonificans HB-1] Length = 255 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 65 GLIVFIIC--FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 G+I+FII + F MG GD ++ + GW L+ LFF ++ G +L V ++ Sbjct: 157 GVILFIIETYYVFTGKEGMGYGDANIMAVIGAFLGWKKVLLT-LFFASLTGAVLGVTLMA 215 Query: 123 VRMITNHIPI-FGMF 136 +R + P+ FG F Sbjct: 216 LRKSSKEQPLPFGPF 230 >gi|290559758|gb|EFD93082.1| peptidase A24A prepilin type IV [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 276 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 17/147 (11%) Query: 6 MVFSAVFLIPPFC---LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62 MV+S +LI F L+ A+++D+ +P+ +S V++ L + I+ + Sbjct: 1 MVYSINYLIFIFVIGVLILASITDIKKREVPDSISYVLIAGSSLLVLAYSISNNTISNLV 60 Query: 63 LVGL-IVFIICFCFFAFNI--MGGGDVKLLTSTAVWF---------GWTPSFLSFLFFVA 110 + L I+ + F +F + GGGDVK+L ++ F + F++ L F Sbjct: 61 YMPLSILLVTGFSYFMYKAGQWGGGDVKILFGISIVFTSINLFSNRSFIALFINILLFGG 120 Query: 111 ILG--GILSVFILTVRMITNHIPIFGM 135 I G G ++V ++ ++ + NH ++ + Sbjct: 121 IYGILGTIAVGVIKIKKLKNHFKVYDI 147 >gi|326795296|ref|YP_004313116.1| prepilin peptidase [Marinomonas mediterranea MMB-1] gi|326546060|gb|ADZ91280.1| Prepilin peptidase [Marinomonas mediterranea MMB-1] Length = 256 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 9/141 (6%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 + S + F+++FLI L AA+ D+ + IP+ S++++ S + L L Sbjct: 107 LTSSPLQFASLFLIF-LSLFIAAVIDIENKWIPDECSLMIIASSFVALLLNAQPLADNVL 165 Query: 61 HLLVG--LIVFIICF--CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116 L+ G L+ F+ F F +G GD KLL + W G++ + + F A LG I Sbjct: 166 GLICGYALVYFLRLFYLHFRQIEAIGLGDAKLLAAIGAWLGFS-NLPYVIMFAASLGMIG 224 Query: 117 SVFILTVRMITNHIPIFGMFV 137 ++ I R + IP FG F+ Sbjct: 225 ALIIRATR--STRIP-FGPFL 242 >gi|288560490|ref|YP_003423976.1| type IV leader peptidase family protein [Methanobrevibacter ruminantium M1] gi|288543200|gb|ADC47084.1| type IV leader peptidase family protein [Methanobrevibacter ruminantium M1] Length = 302 Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVML--GSFLLTAFLLGMDYELIALHLLVGLIV-FIICF 73 F L+ A DL +IPN++S+ ++ G + L+ ++ L A+ + LI+ FII F Sbjct: 27 FTLLLANYYDLKYGIIPNKLSVFLMTFGILINVLILIVLNNRLYAIFYVSYLIIIFIISF 86 Query: 74 CFFAFNIMGGGDVKLLTS 91 + + GGGD+KL S Sbjct: 87 VLWKISFWGGGDLKLFCS 104 >gi|317154607|ref|YP_004122655.1| peptidase A24A prepilin type IV [Desulfovibrio aespoeensis Aspo-2] gi|316944858|gb|ADU63909.1| peptidase A24A prepilin type IV [Desulfovibrio aespoeensis Aspo-2] Length = 181 Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 F +MG GDVKL+ W G +F +FL F + GG +V +L Sbjct: 69 FFLGLMGAGDVKLMAGVGAWLGAQAAFTAFL-FTCLAGGFYAVVVL 113 >gi|134299957|ref|YP_001113453.1| peptidase A24A, prepilin type IV [Desulfotomaculum reducens MI-1] gi|134052657|gb|ABO50628.1| peptidase A24A, prepilin type IV [Desulfotomaculum reducens MI-1] Length = 167 Score = 34.7 bits (78), Expect = 5.2, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 16/95 (16%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFF-VAILGGILSVFILTV--RMITNHIPIFGMFV 137 MG GDVKLL W G P F+ F AI+GGI++ L+ R++ + I F+ Sbjct: 72 MGAGDVKLLAVIGAWQG--PQFVWLCFLCTAIVGGIIAAVQLSKSGRLLQSLKYILFTFL 129 Query: 138 P-----------KSFLMKNKIPYGIAISMGGLISY 161 P + PYG+AI+ G +Y Sbjct: 130 PGAPKAHAFGTLTTAKAGEAFPYGVAIASGTFATY 164 >gi|282899579|ref|ZP_06307543.1| pilD (Peptidase A24A, prepilin type IV) [Cylindrospermopsis raciborskii CS-505] gi|281195458|gb|EFA70391.1| pilD (Peptidase A24A, prepilin type IV) [Cylindrospermopsis raciborskii CS-505] Length = 271 Score = 34.7 bits (78), Expect = 5.2, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 16/88 (18%) Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F F+ +MGGGD KL W GW +L F+A G+L Sbjct: 181 FLFYGKPVMGGGDGKLAAMMGAWLGW--QYLLVASFIACFSGVLVG-------------- 224 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 FG + M+ K+P+G ++ G +IS Sbjct: 225 FGAIIVCDGQMEQKMPFGPFLAWGSVIS 252 >gi|152992433|ref|YP_001358154.1| C4-dicarboxylate transporter permease [Sulfurovum sp. NBC37-1] gi|151424294|dbj|BAF71797.1| C4-dicarboxylate transporter, permease [Sulfurovum sp. NBC37-1] Length = 623 Score = 34.7 bits (78), Expect = 5.4, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 12/97 (12%) Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIP--NRVSIVMLGSFLLTAFLLGMDYELI- 58 K +K F A+ +PP L+ A L +F+ + +I +LG+F L A+ +D+EL+ Sbjct: 407 KVAKAAFKAI--LPPLLLIAAVLGSIFAGIASPTESAAIGVLGAFALAAYNRVLDFELVR 464 Query: 59 -----ALHLLVGLIVFIICFCFFA--FNIMGGGDVKL 88 + L + + +I F+ FN +GGGD+ L Sbjct: 465 YAAVETVKLTAMIFMILIGATAFSLVFNELGGGDMAL 501 >gi|170724968|ref|YP_001758994.1| peptidase A24A prepilin type IV [Shewanella woodyi ATCC 51908] gi|169810315|gb|ACA84899.1| peptidase A24A prepilin type IV [Shewanella woodyi ATCC 51908] Length = 164 Score = 34.7 bits (78), Expect = 5.7, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 12/124 (9%) Query: 34 NRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTA 93 R+S + + L+ L +L+ L G ++F + F F + GD KL ++ A Sbjct: 22 RRISNIGCFATLIICVWLAASQQLLIEGFLTGSLIFALSLVLFRFRWLAAGDGKLASALA 81 Query: 94 VWFGWTPSFLSFLFFVAILGGILSV-FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIA 152 V + ++ L I GG+L+V +++ R+I +P+ + +PYGIA Sbjct: 82 VALPLSQLPVA-LMLTLICGGVLAVIYLIKYRVIQK--------IPRGEDL--GLPYGIA 130 Query: 153 ISMG 156 IS+G Sbjct: 131 ISLG 134 >gi|158320666|ref|YP_001513173.1| peptidase A24A domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158140865|gb|ABW19177.1| peptidase A24A domain protein [Alkaliphilus oremlandii OhILAs] Length = 252 Score = 34.7 bits (78), Expect = 5.9, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 22/143 (15%) Query: 17 FCLVFA-----ALSDLFSAMIPNRVSIVMLGSFLLT------AFLLGMD----YELIALH 61 +C++F+ AL DL +IP+ +++L F+L+ A++L M+ + I Sbjct: 99 YCILFSILMVVALIDLKHMIIPD---VLILCIFILSILYKIAAYVLWMEPFNIVQSIGGL 155 Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 +L GL F + F + MG GDV L++S G FL+ +F ++G I+SVF+L Sbjct: 156 ILSGL--FFVLIIFLSKGGMGEGDVTLISSLGFILGIKDIFLT-IFLSFVVGAIISVFLL 212 Query: 122 TVRMITNHIPI-FGMFVPKSFLM 143 ++ PI FG F+ SF M Sbjct: 213 ITKIKGRKDPIPFGPFIIFSFFM 235 >gi|302875179|ref|YP_003843812.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B] gi|307688856|ref|ZP_07631302.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B] gi|302578036|gb|ADL52048.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B] Length = 159 Score = 34.7 bits (78), Expect = 6.0, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L++ +LSD+ +IP++V I++L L++ + + L+ L L+ I FII + Sbjct: 33 LLYVSLSDIKIRIIPDKVHIMIL---LVSLININLKDSLLGLFLVS--IPFIIT-ALISE 86 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLS 104 N +GGGD+KL+ ++ G FL+ Sbjct: 87 NGIGGGDIKLMGASGFLLGVKGGFLA 112 >gi|307245414|ref|ZP_07527502.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254369|ref|ZP_07536207.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306853755|gb|EFM85972.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862668|gb|EFM94624.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] Length = 142 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 17/93 (18%) Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS-FLSFLFFVAILGGILSVFILTV 123 ++ +I F F N++G GDVKLL AV PS F F F+ G+L + Sbjct: 57 AILCLVIGFVLFLLNVIGAGDVKLL---AVLMLAVPSPFAVFFLFLTACAGLLLI----- 108 Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156 I G + + + +PYGIAIS G Sbjct: 109 --------IIGWLFYRKAIREKGLPYGIAISAG 133 >gi|90411209|ref|ZP_01219222.1| hypothetical protein P3TCK_06572 [Photobacterium profundum 3TCK] gi|90328055|gb|EAS44376.1| hypothetical protein P3TCK_06572 [Photobacterium profundum 3TCK] Length = 168 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 33/171 (19%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTA------FLLGMDYELIALHLL---VGLIVF 69 ++++AL DL IPN ++V+L F LT F+ +D+ + L+ VGL+V Sbjct: 9 VIYSALYDLRENKIPNS-AVVILALFGLTQAIISSLFIGSLDFHHLTDALIGFIVGLLVS 67 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 II + G GD KLL + + G+ P+ L + I G+LS+ + MI H Sbjct: 68 II---LHYLGLFGAGDAKLLAALGIVVGF-PNILLLISMSVIFSGVLSLLL----MICKH 119 Query: 130 --IPIFGMFV----------PKS-FLMKNKIPYGIAISMGGLISYPDSYLF 167 IP F + P+S + N +P G AI + L Y + Y+F Sbjct: 120 EFIPNFRRWANIIFYQFYQSPQSDSIAVNAVPMGGAILLATL--YCEFYMF 168 >gi|283850944|ref|ZP_06368229.1| peptidase A24A prepilin type IV [Desulfovibrio sp. FW1012B] gi|283573590|gb|EFC21565.1| peptidase A24A prepilin type IV [Desulfovibrio sp. FW1012B] Length = 165 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 16/97 (16%) Query: 26 DLFSAMIPNRVS-------IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 D+ S IPNR++ + + G+F + L G+ AL LL G +VF+I F Sbjct: 25 DMRSRRIPNRITFPAMLVLVALHGAF---SGLPGLGEA--ALGLLGGFLVFLIPHLF--- 76 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115 ++G GDVKL+ G + + L+ + F ++ GG+ Sbjct: 77 GLLGAGDVKLMAVVGAGLG-SQALLTAVLFTSVAGGL 112 >gi|163788857|ref|ZP_02183302.1| hypothetical protein FBALC1_11487 [Flavobacteriales bacterium ALC-1] gi|159876094|gb|EDP70153.1| hypothetical protein FBALC1_11487 [Flavobacteriales bacterium ALC-1] Length = 623 Score = 34.3 bits (77), Expect = 6.6, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 13/90 (14%) Query: 44 FLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWF---GW-- 98 F F+LG+ LI +LLV +VF + FF ++ G L+ VW GW Sbjct: 75 FFKRTFILGILKFLIEAYLLVS-VVFYLGLAFFNVDVNYTGFKALIVKALVWLQDSGWIV 133 Query: 99 -TPS-FLSFLFFVAILGGILSVFILTVRMI 126 PS F +FF+ IL +F +VR I Sbjct: 134 KVPSLFYKLVFFILIL-----IFFKSVRNI 158 >gi|218441560|ref|YP_002379889.1| peptidase A24A domain protein [Cyanothece sp. PCC 7424] gi|218174288|gb|ACK73021.1| peptidase A24A domain protein [Cyanothece sp. PCC 7424] Length = 270 Score = 34.3 bits (77), Expect = 6.7, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 16/129 (12%) Query: 23 ALSDLFSAMIPNRV--SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF-- 78 +L DL + +PN + S ++LG + A G D +A++L++G+I ++ F Sbjct: 118 SLIDLDTMTLPNSLTESGLVLG-LIFQATRSGFDGSEMAINLILGIIGAVLGLWLFDIIR 176 Query: 79 ---------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS-VFILTVRMITN 128 MGGGD KL W GW L+ F LG V IL+ +M Sbjct: 177 WVGTIIFQQEAMGGGDPKLAAMIGAWLGWKYLLLTG-FLACALGAFFGIVAILSTQMGRR 235 Query: 129 HIPIFGMFV 137 H FG F+ Sbjct: 236 HPIRFGPFL 244 >gi|134291860|ref|YP_001115629.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4] gi|134135049|gb|ABO59374.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4] Length = 179 Score = 34.3 bits (77), Expect = 6.9, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 22/163 (13%) Query: 16 PFCL----VFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIV-F 69 P C+ + AA +DL S IPNR+ + L G+ + L G+ ++A L G Sbjct: 11 PLCVTLLVIVAASTDLASRRIPNRLVVAGLAGALVAQCALHGVPAGVLAW--LAGAATGL 68 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFV---------AILGGILSVF 119 + F+ M GDVKL+ + W G +F + FV A+L G + Sbjct: 69 GLLLPFYLLRGMAAGDVKLMLAIGAWVGAQMTFYIVLATFVAGGIGALGFALLRGRMRRM 128 Query: 120 ILTVRMITNH---IPIFGMFV-PKSFLMKNKIPYGIAISMGGL 158 V M+ H P+ G P +PYG+AI++G L Sbjct: 129 WTNVWMLVAHRAAAPLAGATDGPVESASVGALPYGVAIAVGTL 171 >gi|260062510|ref|YP_003195590.1| putative transmembrane HD family protein [Robiginitalea biformata HTCC2501] gi|88784075|gb|EAR15245.1| putative transmembrane HD family protein [Robiginitalea biformata HTCC2501] Length = 682 Score = 34.3 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 33/151 (21%) Query: 10 AVFLIPPFCLVFAALSDLFSA----------------MIPNRVSIVMLG--SFLLTAFLL 51 A+ + P C++ L F A ++PN + L + ++T + Sbjct: 322 ALVFVVPLCILPLILKTFFDARLGLFVHVLTVLILGFVVPNSFEYIFLQIIAGIVTILTV 381 Query: 52 GMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111 Y+ L + VG I I +FAFNI+ GG + VW ++F FF + Sbjct: 382 SELYKRANLFISVGQITLIYILGYFAFNIIQGGSL----DNVVW-------VNFGFF--L 428 Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPKSFL 142 L G++++F+ +I + +FGM S L Sbjct: 429 LNGMITLFVQP--LIYIYEKMFGMVSDVSLL 457 >gi|73669011|ref|YP_305026.1| hypothetical protein Mbar_A1491 [Methanosarcina barkeri str. Fusaro] gi|72396173|gb|AAZ70446.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 254 Score = 34.3 bits (77), Expect = 7.6, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 6/116 (5%) Query: 16 PFCLVFAALSDLFSAMIPNRVSIVMLGS---FLLTAFLLGMDYELIALHLLVGLIVFIIC 72 PF L+++ SDL S + N+V ML S F+ L G L+ L +L G++VF Sbjct: 12 PF-LLYSCYSDLNSRRVSNKVWKYMLASGSGFVFYEILTGGLSYLMPL-ILSGVLVFTAV 69 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 + F GGGD K L ++ F P F SF + L G+ + I T ++ N Sbjct: 70 YLLFQVGAFGGGDAKGLIVLSILFPSYPVF-SFSEKIYPLLGVPPIGIFTFTVLGN 124 >gi|107022591|ref|YP_620918.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054] gi|116689540|ref|YP_835163.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424] gi|170732844|ref|YP_001764791.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3] gi|105892780|gb|ABF75945.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054] gi|116647629|gb|ABK08270.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424] gi|169816086|gb|ACA90669.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3] Length = 164 Score = 34.3 bits (77), Expect = 7.6, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 7/95 (7%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVG-LIVFIICFCFFA 77 V AL D+ IPN + I G F+ L G + + L+G LI F+ F FF Sbjct: 15 VLVALEDIRHRRIPNSLVI---GGFVSAFVLAGHSPFGISVNQALIGVLIGFLSLFPFFV 71 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112 +MG DVK+ W G P L +L+ +A L Sbjct: 72 LRVMGAADVKVFAVLGAWCG--PHALLWLWIIASL 104 >gi|113476284|ref|YP_722345.1| type 4 prepilin peptidase 1 [Trichodesmium erythraeum IMS101] gi|110167332|gb|ABG51872.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Trichodesmium erythraeum IMS101] Length = 273 Score = 34.3 bits (77), Expect = 7.6, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 17/128 (13%) Query: 26 DLFSAMIPNRVS----IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--- 78 DL + +PN ++ IV L +LT F + +L++G+I ++ F Sbjct: 121 DLDTMTLPNPLTQSGLIVGLFFQMLTTFEENFQVNNLVNYLIIGIIGAVVGLWLFDLISI 180 Query: 79 --------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 +MGGGD KL W GW L+ F +G ++ + +R++ Sbjct: 181 FGSIAFGQTVMGGGDAKLAAMIGAWLGWKYLLLT-CFLACAMGALVGGGAIALRLLDRRQ 239 Query: 131 PI-FGMFV 137 PI FG F+ Sbjct: 240 PIPFGPFL 247 >gi|32452621|gb|AAP43983.1| TadV [Aggregatibacter actinomycetemcomitans] gi|109727127|gb|ABG45871.1| TadV [Aggregatibacter actinomycetemcomitans] Length = 142 Score = 34.3 bits (77), Expect = 7.8, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 20/152 (13%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 +A+ +I L+ +++D+ S +I NR+ + +L F + F L + Y+ I ++ L Sbjct: 6 NALVIITLSLLITLSITDIRSRLISNRIVLFLL--FAIIPFSL-LKYQTI--FVMPALCT 60 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 II F F+ +G GD+KL + + +AI G + F Sbjct: 61 LIIGFLLFSLRFIGAGDIKLAS---------------VLMLAIPSGEVFSFFFFTTFAGL 105 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + I G + + +N +PYG+AIS+G +I+ Sbjct: 106 GLIIIGWLFFRKSIKENGLPYGVAISLGFMIN 137 >gi|218961045|ref|YP_001740820.1| putative bifunctional prepilin leader peptidase and methylase [Candidatus Cloacamonas acidaminovorans] gi|167729702|emb|CAO80614.1| putative bifunctional prepilin leader peptidase and methylase [Candidatus Cloacamonas acidaminovorans] Length = 242 Score = 34.3 bits (77), Expect = 7.8, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 24/116 (20%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 FLIP F + D +IPN +SI +L + ++ F+ G D +I GL+ + Sbjct: 99 FLIPIFFI------DALHQIIPNVLSIPLLITGIIFVFIPGNDVGIIN-----GLVTGAV 147 Query: 72 CFCFFAF-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116 FC F +GGGD+ L T+ A +FG T + ++F ++ L GI+ Sbjct: 148 VFCLLLFLAWAYQKIRGTEGLGGGDIWLFTALATYFGLTG--IPYIFLLSALMGII 201 >gi|206559891|ref|YP_002230655.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia J2315] gi|198035932|emb|CAR51824.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia J2315] Length = 164 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 7/95 (7%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LLVGLIVFIICFCFFA 77 V AL D+ IPN + I G F+ L G + I+++ L+ L+ F+ F FF Sbjct: 15 VLVALEDIRHRRIPNSLVI---GGFVSAFVLAGHNPFGISVNQALIGALVGFLSLFPFFV 71 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112 +MG DVK+ W G P L +L+ +A L Sbjct: 72 LRVMGAADVKVFAVLGAWCG--PYALLWLWIIASL 104 >gi|197117919|ref|YP_002138346.1| type IV prepilin-like proteins leader peptide processing enzyme [Geobacter bemidjiensis Bem] gi|197087279|gb|ACH38550.1| type IV prepilin-like proteins leader peptide processing enzyme [Geobacter bemidjiensis Bem] Length = 274 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 68/132 (51%), Gaps = 15/132 (11%) Query: 17 FC--LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI-----VF 69 FC LV DL +IP+ +++ + + +F + +L L+ L+G++ +F Sbjct: 124 FCSALVVVTFIDLEHQIIPDAITLPGIVAGFAASFFIP---QLGWLNSLIGILAGGGSLF 180 Query: 70 IICFCFFAF---NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 ++ + + A + MGGGD+KLL + GW + L +F +++G ++ V ++ R Sbjct: 181 LVAYIYQAIAKKDGMGGGDIKLLAMMGAFLGWK-AILFIIFTASLIGSVIGVSVMLARKE 239 Query: 127 TNHIPI-FGMFV 137 + + I FG F+ Sbjct: 240 NSSLAIPFGPFL 251 >gi|84687269|ref|ZP_01015149.1| hypothetical protein 1099457000225_RB2654_21338 [Maritimibacter alkaliphilus HTCC2654] gi|84664702|gb|EAQ11186.1| hypothetical protein RB2654_21338 [Rhodobacterales bacterium HTCC2654] Length = 171 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 21/152 (13%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFL---LTAFLLGM----DYELIALHLLVGLIVFIIC 72 V+ A+SD+ IPN+ + + G + L A + + DY +HL V + ++ Sbjct: 22 VWVAISDMSRMKIPNKAVMALFGVYAVVGLAAVAMSVITLPDYLWRYVHLAV---ILLVG 78 Query: 73 FCFFAFNIMGGGDVKLLTSTA--VWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 F A ++G GD K + A V G S +F+F AILGG F+L I + Sbjct: 79 FVMNAAGLLGAGDAKFAAAMAPFVALG-DLSVFAFIFAAAILGG----FVL--HRIAKRV 131 Query: 131 PIFGMFVPK-SFLMKNKIPYGIAISMGGLISY 161 VP ++ P G+ + + GL++Y Sbjct: 132 SFVRAAVPGWESWERDDFPMGLCLGI-GLVAY 162 >gi|134281870|ref|ZP_01768577.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305] gi|134246932|gb|EBA47019.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305] Length = 179 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 20/162 (12%) Query: 16 PFCL----VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 P C+ V AA DL S IPNR+ + L L+ L + A L + Sbjct: 11 PLCVTLLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAGL 70 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-----MI 126 F+ M GDVKL+ + W G T + L ++GG ++ ++ R ++ Sbjct: 71 LLPFYLVRGMAAGDVKLMLAIGAWVGPTLA-LHIALATFVVGGAWALAVVARRGRFRKLL 129 Query: 127 TNHIPIF-GMFVPKSFLMKNK---------IPYGIAISMGGL 158 N +F G +P+ +PYG+AI++G L Sbjct: 130 ANLRHLFAGAALPRVASAARAAPEIDSVGMLPYGVAIAIGTL 171 >gi|59711118|ref|YP_203894.1| hypothetical protein VF_0511 [Vibrio fischeri ES114] gi|59479219|gb|AAW85006.1| hypothetical protein VF_0511 [Vibrio fischeri ES114] Length = 145 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 18/140 (12%) Query: 20 VFAALSDLFSAMIPNRVS-IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 ++A D+ + I N + I+M+ F GM Y LL LI+ + F F F Sbjct: 16 IYAVFHDIKNRKISNNIVFIIMIIGFFSIFVKGGMSY------LLSPLIILFVGFILFKF 69 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 NI+ GD+K + ++ L + LGG+ + ++ +T + Sbjct: 70 NIIAAGDIKYYAAMSLMIE-QQYLLLVTCIILCLGGLQAYCQYSIYKLTGN--------- 119 Query: 139 KSFLMKNKIPYGIAISMGGL 158 ++ +PYG+AIS+G L Sbjct: 120 -ERWIERGVPYGVAISIGSL 138 >gi|170734871|ref|YP_001773985.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3] gi|169820909|gb|ACA95490.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3] Length = 179 Score = 33.9 bits (76), Expect = 8.8, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 26/165 (15%) Query: 16 PFCL----VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FI 70 P C+ V AA +D+ S IPNR+ ++ L L+ LL L L G F Sbjct: 11 PLCVTLLAVAAASTDIASRRIPNRLVLLGLAGALVAQCLL-HGVPAGVLGWLAGAATGFG 69 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA--ILGGI--LSVFILTVRMI 126 + F+ M GDVKL+ + W G + ++F +A + GGI ++ +L RM Sbjct: 70 LLLPFYLLRGMAAGDVKLMLAIGAWVG---AEMTFYIVLATFLAGGIGAIAYALLRGRMR 126 Query: 127 TNHIPIFGMFVPKSFLMKNK-------------IPYGIAISMGGL 158 + + V +S + + +PYG+AI++G L Sbjct: 127 QVWTNVRTLIVRRSQAARAEADDGPVEIASVGTLPYGVAIAVGTL 171 >gi|289209346|ref|YP_003461412.1| prepilin peptidase [Thioalkalivibrio sp. K90mix] gi|288944977|gb|ADC72676.1| Prepilin peptidase [Thioalkalivibrio sp. K90mix] Length = 296 Score = 33.9 bits (76), Expect = 8.9, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI-FGMFV 137 MG GD KLL + W GW + L +++G ++ + ++ +R +IPI FG ++ Sbjct: 217 MGYGDFKLLAALGAWLGWQ-ALPVILLLASLVGAVVGILLILLRGRDRNIPIPFGPYL 273 >gi|107028251|ref|YP_625346.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054] gi|116687162|ref|YP_840409.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424] gi|105897415|gb|ABF80373.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054] gi|116652877|gb|ABK13516.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424] Length = 179 Score = 33.9 bits (76), Expect = 8.9, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 26/165 (15%) Query: 16 PFCL----VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FI 70 P C+ V AA +D+ + IPNR+ ++ L L+ LL L L G F Sbjct: 11 PLCVTLLAVAAASTDIATRRIPNRLVLLGLAGALVAQCLL-QGVPAGVLGWLAGAATGFG 69 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA--ILGGI--LSVFILTVRMI 126 + F+ M GDVKL+ + W G + ++F +A + GGI ++ +L RM Sbjct: 70 LLLPFYLLRGMAAGDVKLMLAIGAWVG---AEMTFYIVLATFLAGGIGAIAYALLRGRMR 126 Query: 127 TNHIPIFGMFVPKSFLMKNK-------------IPYGIAISMGGL 158 + + V +S + + +PYG+AI++G L Sbjct: 127 QMWTNVRTLIVRRSQAARAEADDGPVEIASVGTLPYGVAIAVGTL 171 >gi|86147470|ref|ZP_01065782.1| hypothetical protein MED222_21489 [Vibrio sp. MED222] gi|85834763|gb|EAQ52909.1| hypothetical protein MED222_21489 [Vibrio sp. MED222] Length = 176 Score = 33.9 bits (76), Expect = 9.0, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 13/157 (8%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL----GMDYELIALHLLVGLIVFIICFC 74 L+ ++ D+ + IPN+V I+ F+L F+L G ++ + + L+ + +F Sbjct: 12 LIIVSVFDVKESRIPNKVLIL----FVLLYFILLINGGFSWDSLVISLMGAITLFFSGLF 67 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 + M GDVK L ++ GW + L +++ I GI++ F L + N+ Sbjct: 68 LYLLKAMSAGDVKFLGVIGLYVGW-GNLLDTSYYILISSGIIATFYL----LYNNANSES 122 Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 + V F K + G++ L + Y KV + Sbjct: 123 LTVRNYFEEKLMLVSGMSTRTKNLSTVHSRYSNKVTM 159 >gi|307249761|ref|ZP_07531739.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858176|gb|EFM90254.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 108 Score = 33.9 bits (76), Expect = 9.1, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 17/93 (18%) Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTP-SFLSFLFFVAILGGILSVFILTV 123 ++ +I F F N++G GDVKLL AV P SF F F+ G+L Sbjct: 23 AILCLVIGFVLFLLNVIGAGDVKLL---AVLMLAVPSSFAIFFLFLTACSGLL------- 72 Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156 I I G + + + +PYGIAIS G Sbjct: 73 ------IIIIGWLFYRQTIREKGLPYGIAISAG 99 >gi|152974831|ref|YP_001374348.1| peptidase A24A domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023583|gb|ABS21353.1| peptidase A24A domain protein [Bacillus cytotoxicus NVH 391-98] Length = 240 Score = 33.9 bits (76), Expect = 9.2, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 12/78 (15%) Query: 19 LVFAALSDLFSAMIPNRV----SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 LV L+DLF MIPN V S + L ++++ F+ +D +L G I+F + + Sbjct: 108 LVMITLTDLFYMMIPNAVLLSFSCIFLIEYMISPFIFWLD------SVLGGGIIFCVLYI 161 Query: 75 FFAF--NIMGGGDVKLLT 90 N +GGGDVKLL+ Sbjct: 162 LRMIYPNGLGGGDVKLLS 179 >gi|83749640|ref|ZP_00946623.1| Prepilin Peptidase; cpaA1 [Ralstonia solanacearum UW551] gi|207728108|ref|YP_002256502.1| prepilin peptidase protein [Ralstonia solanacearum MolK2] gi|207744156|ref|YP_002260548.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609] gi|83723701|gb|EAP70896.1| Prepilin Peptidase; cpaA1 [Ralstonia solanacearum UW551] gi|206591353|emb|CAQ56965.1| prepilin peptidase protein [Ralstonia solanacearum MolK2] gi|206595560|emb|CAQ62487.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609] Length = 177 Score = 33.9 bits (76), Expect = 9.5, Method: Compositional matrix adjust. Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 35/166 (21%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI-------- 70 + AA SD+ + IPN ++GS L+ A + + +A L G + ++ Sbjct: 16 IAIAAASDVRARRIPNW----LVGSGLVAALI----GQCVAQGLAAGGMAWLGGTAVGMG 67 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVFILTVRMITNH 129 +C + MG GDVKL+ + + G +F ++F+ F+A GG+L++ ++ +R Sbjct: 68 MCIGIYVLGGMGAGDVKLMGAIGAFMGPFGAFHVAFVSFLA--GGVLALVMVLLRREGQR 125 Query: 130 -----------IPIFGMFVPKSFLMKNK-----IPYGIAISMGGLI 159 +P G +P + + +PY +A + G L+ Sbjct: 126 SLAGVSTLLLSLPFGGKAMPSQQHGEKRSGTIQLPYAVAFAAGTLL 171 Searching..................................................done Results from round 2 >gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus str. psy62] gi|254040406|gb|ACT57202.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus str. psy62] Length = 176 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 176/176 (100%), Positives = 176/176 (100%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL Sbjct: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI Sbjct: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA Sbjct: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 >gi|315121893|ref|YP_004062382.1| peptidase A24A prepilin type IV [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495295|gb|ADR51894.1| peptidase A24A prepilin type IV [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 178 Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 117/176 (66%), Positives = 144/176 (81%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 MKE KMVFS +FL+ PFCL+ A LSDLFS MIPNR+S+V+LGSFLL A +G+ YE IAL Sbjct: 1 MKEDKMVFSVIFLVLPFCLISAGLSDLFSTMIPNRISVVLLGSFLLIAPFVGLGYEEIAL 60 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 H+LVGL VFI CF FF+ NIMGGGD KLLT+ ++WFGW S L FLF+VAI GGIL++ + Sbjct: 61 HVLVGLFVFIACFFFFSVNIMGGGDAKLLTTASLWFGWNISLLYFLFYVAIFGGILALVV 120 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 L +R IT +IP+ FVP+SF MKNKIPYG+AIS+GGL+SYPDS+LFK+AL G+S Sbjct: 121 LLIREITRYIPLLDKFVPRSFHMKNKIPYGVAISIGGLVSYPDSHLFKIALEGIST 176 >gi|150398539|ref|YP_001329006.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419] gi|150030054|gb|ABR62171.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419] Length = 170 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 80/170 (47%), Positives = 114/170 (67%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M +A+F++ PFCL FAA SDLF+ IPNR+S ++L SF++ + L G+D LH+ Sbjct: 1 MTIAAIFVVFPFCLAFAAFSDLFTMTIPNRISAIVLVSFVVISPLAGLDASKACLHVAAA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 ++VF CFC FA N+MGGGD KLLT++A+WFG+ S + FL +V+ GG+L++ +L +R Sbjct: 61 VLVFGACFCLFAVNVMGGGDAKLLTASAIWFGFEASLIDFLLYVSAFGGLLTIAVLLLRS 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 N I + VP+ L KIPYGIAI++GG +YP S L K+AL S Sbjct: 121 QENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMKLALTQFS 170 >gi|209551757|ref|YP_002283674.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537513|gb|ACI57448.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 170 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 82/170 (48%), Positives = 111/170 (65%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ +AVF+I P CL A SDLF+ IPNRVS++++ SF + A L G+ + I +HL Sbjct: 1 MIAAAVFMILPLCLAMAGFSDLFTMTIPNRVSLILIVSFFVLAPLSGLGLQAIGMHLAAA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IVF CF FAFN+MGGGD KLL++TA+WFG S L + VAI+GG +++ IL VR Sbjct: 61 AIVFSACFALFAFNVMGGGDAKLLSATALWFGLNESLLFLMSDVAIIGGFITLLILMVRA 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 + I G+ VP S L+ KIPYGIAI++GG +++P S LF L L Sbjct: 121 QADTILAIGLPVPNSILIAKKIPYGIAIAIGGFMAFPSSPLFLTTLESLK 170 >gi|118589701|ref|ZP_01547106.1| peptidase A24A, prepilin type IV [Stappia aggregata IAM 12614] gi|118437787|gb|EAV44423.1| peptidase A24A, prepilin type IV [Stappia aggregata IAM 12614] Length = 168 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 2/166 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 MV +A+ +I P + F SDL + I NRVS++++ F + A G+ + +H L Sbjct: 1 MVQAAILVIFPMLVAFGGASDLLTMTIQNRVSLLLIAGFAILAVATGLPLQAWGMHALAF 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +VF CF FFAF MGGGDVK +++ A+W G++ L F+ FVAI G L+ +L +R Sbjct: 61 AVVFAPCFLFFAFGWMGGGDVKFISAIALWIGFSQELLMFVLFVAIYGMFLTFGLLIMRQ 120 Query: 126 IT--NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + + + + K+ IPYGIAI++ GL Y +Y F + Sbjct: 121 QSVVPSVLYRQEWFARLHDSKSGIPYGIAIAIAGLQVYSSTYWFDL 166 >gi|90425195|ref|YP_533565.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB18] gi|90107209|gb|ABD89246.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB18] Length = 174 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 2/165 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ L+ P + FAA SDLF+ I NRVS++++ FL A L GM + I H+ G Sbjct: 2 MLDLLRVLLFPALMAFAAASDLFTMTISNRVSLLLIVGFLALAGLGGMGLQEILSHIAAG 61 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 V I F FAF +GGGD K+ ++ A+WFG+ L +L + ++ GG L++ +L R Sbjct: 62 GSVLAIAFACFAFGWVGGGDAKVASAAALWFGFD-HLLEYLVYASLFGGALTLLLLQFRQ 120 Query: 126 ITNHIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + G ++ + + IPYGIA++ G L+ YP++ + Sbjct: 121 WPLPYALCGQPWLLRLHAKETGIPYGIALATGALMIYPETEWIRA 165 >gi|148258233|ref|YP_001242818.1| putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp. BTAi1] gi|146410406|gb|ABQ38912.1| Putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp. BTAi1] Length = 174 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 95/160 (59%), Gaps = 2/160 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 A L+ P + FAA SDLF+ I NRVS +L FL+ A L GM + + H+ G ++ Sbjct: 6 ARLLLFPALMAFAAASDLFTMTISNRVSFALLAGFLVLAPLSGMGMQDMLSHVGAGALLL 65 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ F FAF +GGGD K+ ++ A+WFG+ +++L + +I GG+L++ ++ R Sbjct: 66 VVAFACFAFGWIGGGDAKVASAAALWFGFA-HLMNYLLYASIFGGVLTLLLMQFRQWPLP 124 Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168 + G ++ + ++ +PYGIA+++G L+ YPD+ K Sbjct: 125 YMLAGQPWLARLHARESGVPYGIALALGALMVYPDTDWVK 164 >gi|15963892|ref|NP_384245.1| putative pilus assembly transmembrane protein [Sinorhizobium meliloti 1021] gi|15073067|emb|CAC41526.1| Putative pilus assembly transmembrane protein [Sinorhizobium meliloti 1021] Length = 174 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 76/173 (43%), Positives = 110/173 (63%) Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62 E +M+ + + ++ PF L AALSDL + IPNRVS+V+L SF A L G+D + LH Sbjct: 2 ELEMINATILVVFPFSLALAALSDLLTMTIPNRVSLVLLVSFFFVAPLAGLDLAQLGLHT 61 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + ++F + F FA N+MGGGD KLLT++A WFG+ S ++FL +V+ GG L++ +L Sbjct: 62 VAAGLIFAVSFALFAANVMGGGDAKLLTASAAWFGFNESLVTFLVYVSFFGGFLTLIVLL 121 Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 +R N I + VP+ L KIPYGIAI++GG +YP S L ++A LS Sbjct: 122 LRSKENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMQLAFAQLS 174 >gi|222084467|ref|YP_002542996.1| prepilin peptidase protein [Agrobacterium radiobacter K84] gi|221721915|gb|ACM25071.1| prepilin peptidase protein [Agrobacterium radiobacter K84] Length = 170 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 76/169 (44%), Positives = 113/169 (66%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ +A LI P CL AA+SDL + IPNRVS+++LG+F++ A +G+ I +H+ Sbjct: 1 MLEAATLLIFPLCLSVAAISDLLTMTIPNRVSLILLGAFIVLAPFVGLTLPEIGMHVAGA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IVF CF FA N+MGGGD KLL ++A+WFG+ PS L+FL +VA +GG +++ IL +R Sbjct: 61 AIVFCACFALFALNVMGGGDAKLLAASALWFGFDPSLLAFLVYVAFIGGAVTIAILMIRS 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174 ++ I G+ +P S L+ KIPYGIAI++GG +++P S L A + Sbjct: 121 QSSAIMAMGLPLPNSLLIAKKIPYGIAIAIGGFLAFPSSPLVVAAASHI 169 >gi|75674501|ref|YP_316922.1| peptidase A24A, prepilin type IV [Nitrobacter winogradskyi Nb-255] gi|74419371|gb|ABA03570.1| peptidase A24A, prepilin type IV [Nitrobacter winogradskyi Nb-255] Length = 174 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 2/164 (1%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + A L+ P + FAA SDL + I NRVS++++ FL+ A L GM + H GL Sbjct: 3 LDVARLLLFPALMAFAAASDLLTMTISNRVSLLLVAGFLVLAPLSGMGLHEMLSHAGAGL 62 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 V ++ F FA +GGGD K+ + A+WFG+ L +L + ++ GG L++ +L R Sbjct: 63 AVLVVAFSCFAMGWVGGGDAKVAAAAALWFGFG-HTLEYLVYASLFGGALTLLLLQFRQW 121 Query: 127 TNHIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 ++G ++ + IPYGIA++ L+ YP++ + Sbjct: 122 PLPASLYGQDWLLRLHGKNTGIPYGIALAFAALLIYPETDWVRA 165 >gi|209886529|ref|YP_002290386.1| peptidase A24A, prepilin type IV [Oligotropha carboxidovorans OM5] gi|209874725|gb|ACI94521.1| peptidase A24A, prepilin type IV [Oligotropha carboxidovorans OM5] Length = 174 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 2/168 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 A + P + FAA+SD+ + I NRVS++++G F + A L GM+ E I H G V Sbjct: 6 ARLFLFPALMAFAAVSDILTMTISNRVSLLLIGGFFVLAGLTGMNLETIGWHAAAGATVL 65 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ F FAF +GGGD K+ S A+WFG+ L +L +I+GG L++ IL +R Sbjct: 66 VVAFTCFAFGWIGGGDAKIAASAALWFGFA-HLLDYLVAASIVGGALTLIILQLRRWPMP 124 Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 + ++ + IPYG+A++ G ++ YP++ ++A SA Sbjct: 125 AFLTSQDWLVRLHDKATGIPYGVALAAGAMLVYPNTEWVRLAAFATSA 172 >gi|254502136|ref|ZP_05114287.1| peptidase, A24 (type IV prepilin peptidase) family [Labrenzia alexandrii DFL-11] gi|222438207|gb|EEE44886.1| peptidase, A24 (type IV prepilin peptidase) family [Labrenzia alexandrii DFL-11] Length = 170 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 98/167 (58%), Gaps = 3/167 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + V ++ P + FA SDL + I NRVSI+++ F++ A + GM +H L Sbjct: 1 MIEAVVLVLFPMLVAFAGASDLLTMKIGNRVSILLIIGFIVLAAVNGMPVNDWGMHGLGL 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 ++VF+ CF FFA MGGGDVKL++S +WFG+ P + FLF VA+LG +L++ ++ +R Sbjct: 61 VVVFLPCFAFFAAGWMGGGDVKLISSVGLWFGFGPILIDFLFLVALLGCVLTLSLVVIRS 120 Query: 126 ITNHIPIF---GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 +P + + K+ IPYGIAIS LI YP S F + Sbjct: 121 SLVVLPAPLRGQEWALRLHDAKSGIPYGIAISAAALIVYPRSDWFSM 167 >gi|146338125|ref|YP_001203173.1| putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp. ORS278] gi|146190931|emb|CAL74936.1| Putative type IV prepilin peptidase, cpaA [Bradyrhizobium sp. ORS278] Length = 174 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 92/161 (57%), Gaps = 2/161 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 A LI P + FAA SDL + I NRVS+ ++ FL+ A L GM + +H G + Sbjct: 6 ARLLIFPALMAFAAASDLLTMTISNRVSLALVAGFLVMAPLSGMSMADMLMHCGAGASLL 65 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 +I F FAF +GGGD K+ ++ A+WFG+ +++L + +I GG+L++ ++ R Sbjct: 66 VIAFTCFAFGWIGGGDAKVASAAALWFGFA-HLMNYLLYASIFGGVLTLALMQFRQWPLP 124 Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + G ++ + + +PYGIA+++G L+ YP++ K Sbjct: 125 YGLAGQPWLARLHAKDSGVPYGIALALGALMVYPETEWVKA 165 >gi|328545281|ref|YP_004305390.1| peptidase A24A, prepilin type IV [polymorphum gilvum SL003B-26A1] gi|326415023|gb|ADZ72086.1| Peptidase A24A, prepilin type IV [Polymorphum gilvum SL003B-26A1] Length = 170 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 97/170 (57%), Gaps = 2/170 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ +A+ ++ P + FAA SDL + IPNRVS+++ G+F++ A GM IALH + G Sbjct: 1 MLEAALLVVFPVLVAFAAASDLLTMTIPNRVSLLLAGAFVVLAVATGMSVAEIALHAVAG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 V +CF FA MGGGD K+ ++ +W G + ++FL I G +L++ +L+ R Sbjct: 61 GTVLAVCFFLFAMGWMGGGDAKIASAIGLWLGLSSHLVAFLMLTTIYGMVLTIVLLSFRR 120 Query: 126 ITNHIPIFGM--FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173 + G ++ + + IPYGIAI+ L +YP ++ F +A +G Sbjct: 121 LPYLPGGLGRQEWMLRLHDTRTGIPYGIAIAAAALQTYPTTHWFALAALG 170 >gi|91977983|ref|YP_570642.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB5] gi|91684439|gb|ABE40741.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB5] Length = 174 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 2/161 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 + P + FAA SDLF+ I NRVS++++ F++ A L GM IA H GL V Sbjct: 6 LRLSLFPALMAFAAASDLFTMTISNRVSLLLVAGFIVLAPLTGMGLYEIASHFGAGLAVL 65 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 + F FA +GGGD K+ + A+WFG+ L +L + ++ GG L++ +L+ R Sbjct: 66 AVAFGCFAMGWVGGGDAKVAAAAALWFGFG-HLLDYLVYASLFGGALTLLLLSFRQWPLP 124 Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + G ++ + + IPYGIA++MG L YP + + Sbjct: 125 YQLAGQGWLMRLHAKETGIPYGIALAMGALAVYPQTEWIQA 165 >gi|325291661|ref|YP_004277525.1| components of type IV pilus, prepilin peptidase [Agrobacterium sp. H13-3] gi|325059514|gb|ADY63205.1| components of type IV pilus, prepilin peptidase [Agrobacterium sp. H13-3] Length = 170 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 77/170 (45%), Positives = 111/170 (65%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 MV +A+FLI PFCL FAAL+DLFS IPNR+++ +L SF++ A GMD + A+ + Sbjct: 1 MVIAAIFLILPFCLAFAALNDLFSMTIPNRITLFLLLSFIVVAPFSGMDLQTFAMSIAAA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 VF CF FA N MGGGD KLLT+ VW+G+ S + FL V +GG+L++ IL +R Sbjct: 61 AAVFFACFILFAANAMGGGDAKLLTAVTVWYGFNISLIEFLLAVTFIGGVLTLGILLLRS 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 + I G+ +P S ++ KIPYGI I++ GL++Y ++ L K A+ L+ Sbjct: 121 RSQEILAIGIPIPDSLMVVKKIPYGIGIAIAGLLTYGETPLVKAAIASLT 170 >gi|85713503|ref|ZP_01044493.1| peptidase A24A, prepilin type IV [Nitrobacter sp. Nb-311A] gi|85699407|gb|EAQ37274.1| peptidase A24A, prepilin type IV [Nitrobacter sp. Nb-311A] Length = 174 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 2/161 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 A L+ P + FAA SDL + I NRVS++++ FLL A L GM + H GL V Sbjct: 6 ARLLLFPALMAFAAASDLLTMTISNRVSLLLIAGFLLLAPLSGMGLHEMLSHAGAGLAVL 65 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ F FA +GGGD K+ ++A+WFG+ L +L + ++ GG L++ +L R Sbjct: 66 VVAFSCFAMGWIGGGDAKVAAASALWFGFG-HTLEYLVYASLFGGALTLLLLQFRQWPLP 124 Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 ++ ++ + IPYGIA++ L+ YP++ Sbjct: 125 ASLYSQDWLLRLHGRNAGIPYGIALAFAALLIYPETDWVSA 165 >gi|307315789|ref|ZP_07595303.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C] gi|307320424|ref|ZP_07599841.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83] gi|306893990|gb|EFN24759.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83] gi|306898557|gb|EFN29230.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C] Length = 170 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 108/170 (63%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + + ++ PF L AALSDL + IPNRVS+V+L SF A L G+D + LH + Sbjct: 1 MINATILVVFPFSLALAALSDLLTMTIPNRVSLVLLVSFFFVAPLAGLDLAQLGLHTVAA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 ++F + F FA N+MGGGD KLLT++A WFG+ S ++FL +V+ GG L++ +L +R Sbjct: 61 GLIFAVSFALFAANVMGGGDAKLLTASAAWFGFNESLVTFLVYVSFFGGFLTLIVLLLRS 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 N I + VP+ L KIPYGIAI++GG +YP S L ++A LS Sbjct: 121 KENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAYPSSPLMQLAFAQLS 170 >gi|15887575|ref|NP_353256.1| components of type IV pilus, prepilin peptidase [Agrobacterium tumefaciens str. C58] gi|15155114|gb|AAK86041.1| components of type IV pilus, prepilin peptidase [Agrobacterium tumefaciens str. C58] Length = 170 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 81/169 (47%), Positives = 113/169 (66%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ +A+FLI P CL FAAL+DLFS IPN +++V+L SF A GMD++ L L G Sbjct: 1 MIVAAIFLILPLCLCFAALNDLFSMTIPNVITVVLLLSFAFIAPFAGMDFQTFGLSLAGG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 LIVF+ CF FA N+MGGGD KLLT AVW+G+ S + FL V ++GG L+V IL +R Sbjct: 61 LIVFLGCFALFAANVMGGGDAKLLTGAAVWYGFNISLVEFLLAVTLVGGALTVGILLLRS 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174 + I FG+ +P S ++ KIPYGI I++ GL++Y ++ L K A+ + Sbjct: 121 RSQEIMAFGIPIPDSLMVAQKIPYGIGIAIAGLLTYGEAPLVKAAIASI 169 >gi|307943143|ref|ZP_07658488.1| peptidase A24A prepilin type IV [Roseibium sp. TrichSKD4] gi|307773939|gb|EFO33155.1| peptidase A24A prepilin type IV [Roseibium sp. TrichSKD4] Length = 169 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 67/163 (41%), Positives = 104/163 (63%), Gaps = 2/163 (1%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + + + L PF ++ AA+SDL + IPN++SIV+ F L A ++G+ ++ I LHL G Sbjct: 1 MLAIMSLAFPFLVIRAAVSDLLTMTIPNKISIVLCVLFALYAPIVGLGWQDIGLHLAGGA 60 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-- 124 +VF++CFC FA N MGGGD KLLT+ A+WFGW+ L+FLF A+ G +L++F++ +R Sbjct: 61 VVFVVCFCMFAMNWMGGGDAKLLTAVALWFGWSADLLNFLFATAVFGMLLTLFLILIRPV 120 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167 ++ ++ K IPYG+AI+ G L+ YP S L+ Sbjct: 121 LVLPERLARIEWLTHLLHPKTGIPYGLAIAAGALLVYPTSPLY 163 >gi|241207155|ref|YP_002978251.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861045|gb|ACS58712.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 170 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 85/170 (50%), Positives = 114/170 (67%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ +AVFLI P CL AA SDLF+ IPNR+S+++ SFL+ A G+ E+I +HL Sbjct: 1 MIAAAVFLILPLCLAMAAFSDLFTMTIPNRISVILTASFLVLAPFSGLGLEMIGMHLAGA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IVF CF FAFN+MGGGD KLL++TA+WFG S L + VA +GG++++ IL VR Sbjct: 61 AIVFSACFALFAFNVMGGGDAKLLSATALWFGLNESLLFLMTDVAAIGGLITLLILLVRT 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 +N I G+ VP S L+ KIPYGIAI++GG +++P S LF AL L Sbjct: 121 QSNTILAIGLPVPNSVLLAKKIPYGIAIAIGGFMAFPSSPLFLAALESLK 170 >gi|116249979|ref|YP_765817.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254627|emb|CAK05701.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 170 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 80/170 (47%), Positives = 112/170 (65%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ +AVF+I P CL AA SDLF+ IPNR+S+++ SF + A L G+ I +HL Sbjct: 1 MIAAAVFVILPLCLAMAAFSDLFTMTIPNRISVILTASFFVLAPLSGLGLAEIGMHLAGA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IVF CF FAFN+MGGGD KL+++ A+WFG S L + VA++GG++++ IL VR Sbjct: 61 AIVFSACFALFAFNVMGGGDAKLMSAAALWFGLNESLLFLMTDVAMIGGLITLLILLVRG 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 ++ I G+ VP S L+ KIPYGIAI++GG +++P S LF AL L Sbjct: 121 QSDTILAIGLPVPNSVLLAKKIPYGIAIAIGGFMAFPSSPLFLAALESLK 170 >gi|110636418|ref|YP_676626.1| peptidase A24A, prepilin type IV [Mesorhizobium sp. BNC1] gi|110287402|gb|ABG65461.1| peptidase A24A, prepilin type IV [Chelativorans sp. BNC1] Length = 173 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 69/172 (40%), Positives = 107/172 (62%), Gaps = 1/172 (0%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 MV +A+ +I PFC+ FAA+SD+ S I NRVSI+++ SF + A L+GM I +H L+G Sbjct: 1 MVEAAILVIFPFCMAFAAVSDMISLTIANRVSILLVLSFAVLAPLVGMPVAEIGMHFLLG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 V + F FA MGGGD KL+ ++AVWFG+ P + +L A+LGG L++ +++ R Sbjct: 61 GTVLLATFAVFAIGGMGGGDAKLMAASAVWFGFNPGLMDYLLATALLGGALTLALVSFRR 120 Query: 126 ITNHIPIFGMFVPKSF-LMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 + + + F K+ IPYG+A+ +GGLI +P + L + A+ L+A Sbjct: 121 SAFSPLVAHHVLLRHFAEEKSGIPYGVALGLGGLICFPQTPLMQWAMERLAA 172 >gi|254473700|ref|ZP_05087095.1| peptidase A24A, prepilin type IV [Pseudovibrio sp. JE062] gi|211957086|gb|EEA92291.1| peptidase A24A, prepilin type IV [Pseudovibrio sp. JE062] Length = 170 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 95/165 (57%), Gaps = 2/165 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + + +I P L AA DLF+ IPN+++++++ +F+ AFLL + + + + +G Sbjct: 1 MIANGLLIIFPLLLAVAAFFDLFTMTIPNKLNLLLVVAFVAMAFLLQLPLQQVGMSFALG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 V +I F FA +MGGGDVK L + ++W G + + L F+ +I GG L++ IL +R Sbjct: 61 FGVMVIGFGLFALGVMGGGDVKFLAAISLWLGLSMNMLDFILLTSIYGGALTLVILALRK 120 Query: 126 IT--NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168 + ++ K K+ +PYGIAI++ G+ YP++ F Sbjct: 121 VPYFPQFMHGQAWLLKLHDKKSGVPYGIAIAIAGIQVYPNTLWFS 165 >gi|227823969|ref|YP_002827942.1| type IV prepilin peptidase CpaA [Sinorhizobium fredii NGR234] gi|227342971|gb|ACP27189.1| type IV prepilin peptidase CpaA [Sinorhizobium fredii NGR234] Length = 174 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 78/166 (46%), Positives = 110/166 (66%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M + + +I PFCL AA SDLF+ IPNR+S ++L +F++ A L G I+LH+ Sbjct: 1 MTIACILVILPFCLALAAFSDLFTMTIPNRISAILLAAFIVVAPLAGFGMGEISLHIAAA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +VF++CFC FA ++MGGGD KLLT++AVWFG S + FL +V+I GG+L++ +L +R Sbjct: 61 AVVFVVCFCLFAASVMGGGDAKLLTASAVWFGLDASLVDFLVYVSIFGGLLTLAVLLLRR 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 N I G+ VP+ L KIPYGIAI+MGG +YP S L + A Sbjct: 121 QENAILASGIPVPQLLLTAKKIPYGIAIAMGGFAAYPSSPLMEAAF 166 >gi|115525747|ref|YP_782658.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisA53] gi|115519694|gb|ABJ07678.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisA53] Length = 174 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 2/161 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 + P + FAA SDL + I NRVS++++ F A L GM ++ + +H G V Sbjct: 6 LRLFLFPALMAFAAASDLLTMTISNRVSLLLVLGFFGMALLSGMGWQAVLMHASAGGTVL 65 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ F FA +GGGD K+ ++ A+WFG+ L +L + ++ GG L++ +L R Sbjct: 66 LVAFGCFAMGWIGGGDAKVASAAALWFGFD-QLLQYLVYASLFGGALTLMLLQFRQWPLP 124 Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + G ++ + IPYGIA++ G L+ YP + + Sbjct: 125 GVLRGQPWLLRLHSNATGIPYGIALATGALMIYPHTAWIRA 165 >gi|92116015|ref|YP_575744.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14] gi|91798909|gb|ABE61284.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14] Length = 174 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 2/164 (1%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + A L+ P + FAA SDL + I NRVS++++ FL+ A L GM + LH GL Sbjct: 3 LDVARLLLFPALMAFAAASDLLTMTISNRVSLLLVAGFLVVAALSGMSLHDMLLHAGAGL 62 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 V ++ F FA +GGGD K+ + A+WFG+ L +L + ++ GG L++ +L R Sbjct: 63 AVLLVAFTCFAMGWVGGGDAKVAAAAALWFGFG-HLLEYLVYASLFGGALTLLLLQFRQW 121 Query: 127 TNHIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + ++ + IPYGIA+++G L+ YP++ K Sbjct: 122 PLPALFYSQDWLLRLHGKDTGIPYGIALALGALLIYPETGWIKA 165 >gi|323137423|ref|ZP_08072501.1| peptidase A24A prepilin type IV [Methylocystis sp. ATCC 49242] gi|322397410|gb|EFX99933.1| peptidase A24A prepilin type IV [Methylocystis sp. ATCC 49242] Length = 168 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 2/163 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + ++ P +VFAA SDLF+ IPNRVS +++ +L A L + + LH+ G Sbjct: 1 MIEALALIVFPTMMVFAAFSDLFTMTIPNRVSALLVLVYLALAVYLPIPLQTFGLHVSSG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 L + + F F F +GGGD KL ++TA+W GW L + +I GG+L+V I+ +R Sbjct: 61 LAMLALTFVLFQFGWVGGGDAKLASATALWLGW-EHLLDYGLVASIAGGVLTVIIIELRR 119 Query: 126 ITNHIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167 + + F+ + N +PYGIA+++ GL+ YP + LF Sbjct: 120 HDLPRRVLSVAFIARLAEKTNGVPYGIALAVAGLLVYPQTGLF 162 >gi|299132285|ref|ZP_07025480.1| peptidase A24A prepilin type IV [Afipia sp. 1NLS2] gi|298592422|gb|EFI52622.1| peptidase A24A prepilin type IV [Afipia sp. 1NLS2] Length = 174 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 2/161 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 A + P + FAA SDL + I NRVS++++ F + A + GM +E I H L GL V Sbjct: 6 ARLFLFPALMAFAAASDLLTMTISNRVSLLLIAGFFVLAIVTGMGWEAIGWHALAGLSVL 65 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 II F FAF +GGGD K+ +TA+WFG+ L +L ++LGG+L++ IL R T Sbjct: 66 IIAFACFAFGWIGGGDAKVAAATALWFGFG-YLLDYLLLASVLGGVLTLAILQFRNWTLP 124 Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + G ++ + IPYGIA++ L+ YPD+ + Sbjct: 125 TWLLGQDWLVRLHGKDTGIPYGIALAAAALLIYPDTDWTRA 165 >gi|296444398|ref|ZP_06886363.1| peptidase A24A prepilin type IV [Methylosinus trichosporium OB3b] gi|296258045|gb|EFH05107.1| peptidase A24A prepilin type IV [Methylosinus trichosporium OB3b] Length = 167 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 1/164 (0%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + ++ P +VFAA +DL + IPNRVSI ++ F A M + H G Sbjct: 1 MIEAVALVLFPTLMVFAAFTDLLTMTIPNRVSIALVVIFAALAAYTQMPLAIALSHASCG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +++ I+ F F +GGGD KL ++TA+W GW L + +++GG L++ IL +R Sbjct: 61 MVMLIVTFAMFQLGWIGGGDAKLASATALWLGWD-HLLDYGLAASLIGGALTLVILELRR 119 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 +PYGIA+++GGL+ YP S ++ + Sbjct: 120 REPRAVADSPRFAHLCDSMAGVPYGIALAIGGLLIYPQSRVWTL 163 >gi|190889879|ref|YP_001976421.1| prepilin peptidase [Rhizobium etli CIAT 652] gi|190695158|gb|ACE89243.1| prepilin peptidase protein [Rhizobium etli CIAT 652] Length = 170 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 111/170 (65%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + VF++ P CL AA SDLF+ IPNRVS++++ SFL+ A LG + I +HL Sbjct: 1 MIATGVFVVLPLCLAMAAFSDLFTMTIPNRVSLILIVSFLVLAPFLGFGLQAIGMHLAAA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IV CF FAFN+MGGGD KLL++TA+WFG S + VA +GG++++ IL VR Sbjct: 61 AIVLAACFALFAFNVMGGGDAKLLSATALWFGLNQSLTLLMADVAAVGGLITLLILLVRT 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 +N I G+ +P S L+ KIPYGIAI++GG +++P S +F AL L Sbjct: 121 QSNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESLK 170 >gi|222147184|ref|YP_002548141.1| component of type IV pilus prepilin peptidase protein [Agrobacterium vitis S4] gi|221734174|gb|ACM35137.1| component of type IV pilus prepilin peptidase protein [Agrobacterium vitis S4] Length = 172 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 108/170 (63%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + LI P CL AA +DLF IPN + +V+L F A +LG+ L LHL G Sbjct: 1 MLAVTLSLIMPLCLALAAFTDLFEMKIPNAIPLVLLIGFAALALVLGLPIGLAGLHLTAG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 LIVF CF FA N+MGGGD KLLT+ AVW+G+ S + FL VA+ GG+L++ IL +R Sbjct: 61 LIVFFGCFTLFAVNVMGGGDAKLLTAAAVWYGFNISLVEFLIEVAMFGGVLTLMILALRS 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 N + G+ +P+S +++ KIPYGIAI++GG S+ + + +AL +S Sbjct: 121 QANTVMALGLRLPRSLIVEKKIPYGIAIAIGGFCSFLSAPVVTLALATVS 170 >gi|327194696|gb|EGE61542.1| prepilin peptidase protein [Rhizobium etli CNPAF512] Length = 170 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 111/170 (65%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + VF++ P CL AA SDLF+ IPNRVS++++ SFL+ A LG + I +HL Sbjct: 1 MIAAGVFVVLPLCLAMAAFSDLFTMTIPNRVSLILIVSFLVLAPFLGFGLQAIGMHLAAA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IV CF FAFN+MGGGD KLL++TA+WFG S + VA +GG++++ IL VR Sbjct: 61 AIVLAACFALFAFNVMGGGDAKLLSATALWFGLNQSLTLLMADVAAVGGLITLLILLVRT 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 +N I G+ +P S L+ KIPYGIAI++GG +++P S +F AL L Sbjct: 121 QSNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESLK 170 >gi|27376552|ref|NP_768081.1| pilus assembly protein prepilin peptidase subunit [Bradyrhizobium japonicum USDA 110] gi|27349693|dbj|BAC46706.1| pilus assembly protein prepilin peptidase subunit [Bradyrhizobium japonicum USDA 110] Length = 174 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 2/165 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 ++ A L+ P + FAA SDLF+ I NRVS+ ++ F A GM + H+ G Sbjct: 2 ILDLARLLLFPALMAFAAASDLFTMTISNRVSLALVAGFFALALSGGMAPYEMLGHVGAG 61 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +V ++ F FA +GGGD K+ S A+WFG+ ++FL + ++ GG L++ +L R Sbjct: 62 ALVLVVAFTCFAMGWVGGGDAKVAASVALWFGFA-QLMNFLLYASLFGGALTLLLLQFRQ 120 Query: 126 ITNHIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + G ++ + ++ IPYGIA+++ L+ YP++ K Sbjct: 121 WPLPYGLAGQAWLARLHAKESGIPYGIALALSALMVYPETEWVKA 165 >gi|39936738|ref|NP_949014.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris CGA009] gi|192292564|ref|YP_001993169.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris TIE-1] gi|39650594|emb|CAE29117.1| putative type IV prepilin peptidase, cpaA [Rhodopseudomonas palustris CGA009] gi|192286313|gb|ACF02694.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris TIE-1] Length = 174 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + P + FAA SDL + I NR+S++++ FL+ A L G+ I LH G +V + F Sbjct: 10 LFPALMAFAATSDLLTMTISNRISLLLVAGFLVLAPLTGLGAYDILLHFGAGALVLAVAF 69 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 FA +GGGD K++ + A+WFG+ L +L + ++ GG L++ +L R + Sbjct: 70 GCFAMGWIGGGDAKVVAAAALWFGFD-HLLDYLLYASLFGGALTLLLLGFRQWPLPYRLA 128 Query: 134 GM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 +V + + IPYGIA++MG L+ YP + K Sbjct: 129 CQGWVLRLHDQQTGIPYGIALAMGALVIYPHTEWIKA 165 >gi|86748909|ref|YP_485405.1| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris HaA2] gi|86571937|gb|ABD06494.1| Peptidase A24A, prepilin type IV [Rhodopseudomonas palustris HaA2] Length = 173 Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 2/165 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 L+ P + FAA SDLF+ I NRVS++++ FL A + GM LHL G+ V Sbjct: 6 LRLLLFPALMAFAAASDLFTMTISNRVSLLLVAGFLALAPMSGMSLADFGLHLGAGMTVL 65 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 I F FA +GGGD K+ + A+WFG+ + FL + ++ GG L++ +L R Sbjct: 66 AIAFGCFAMGWIGGGDAKVAAAAALWFGFA-HLMDFLLYASLFGGALTLLLLGFRQWPLP 124 Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173 P+ G ++ + + IPYGIA+++G L YP + K +G Sbjct: 125 YPLAGQSWLLRLHAKETGIPYGIALAIGALAVYPQTEWIKAVDLG 169 >gi|153008057|ref|YP_001369272.1| peptidase A24A prepilin type IV [Ochrobactrum anthropi ATCC 49188] gi|151559945|gb|ABS13443.1| peptidase A24A prepilin type IV [Ochrobactrum anthropi ATCC 49188] Length = 174 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 1/162 (0%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M +A+ I +V A ++DL S I NRVSI + F+L A G+ HL VG Sbjct: 1 MTAAAMTAIFALAMVTAMITDLTSMTIRNRVSIGLTLGFVLLAPFCGISLADYGWHLAVG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IV II F F MGGGD KL+ +TA+WFG S + ++ V+ILGG+L++ I+ RM Sbjct: 61 GIVLIITFSLFCLRAMGGGDAKLIAATALWFGPNASLMDYIVMVSILGGVLTLTIILYRM 120 Query: 126 ITNHIPIFG-MFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166 I + F+ IPYGIA+ GL ++P S + Sbjct: 121 IPRPLLADRYAFLGTLARKDVGIPYGIALGAAGLWTFPLSPV 162 >gi|239833239|ref|ZP_04681568.1| peptidase A24A prepilin type IV [Ochrobactrum intermedium LMG 3301] gi|239825506|gb|EEQ97074.1| peptidase A24A prepilin type IV [Ochrobactrum intermedium LMG 3301] Length = 187 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 84/154 (54%), Gaps = 1/154 (0%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 I +V A ++DL S I NRVSI + FLL A L G+ HL VG I II F Sbjct: 22 IFALAMVTAMVTDLTSMTIRNRVSIGLTLGFLLLAPLCGISLSDFGWHLAVGGIALIITF 81 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 F MGGGD KL+ +TA+W+G PS + +L V+ILGG+L++ I+ RM+ + Sbjct: 82 ALFCLRAMGGGDAKLIAATALWYGPDPSLMDYLVMVSILGGVLTLTIILYRMVPRPLLAD 141 Query: 134 G-MFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166 F+ IPYGIA+ GL ++P + + Sbjct: 142 RFAFMGTLARKDVGIPYGIALGAAGLWTFPLTPV 175 >gi|90419762|ref|ZP_01227671.1| putative peptidase A24A, prepilin type IV [Aurantimonas manganoxydans SI85-9A1] gi|90335803|gb|EAS49551.1| putative peptidase A24A, prepilin type IV [Aurantimonas manganoxydans SI85-9A1] Length = 170 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 1/168 (0%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M A+ +I PF +++AA SDL S I NRVSI++ +F + A+ GM I HL +G Sbjct: 1 MTALAILVIFPFAMLYAAASDLVSMTIANRVSILLALAFPVVAYAAGMAPGAIGAHLGIG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 L+ +CF FA MGGGD KLL +TAVWFG TP L ++ F +I GG+L++ +LT+R Sbjct: 61 LVCLTVCFGMFAAGWMGGGDAKLLAATAVWFGPTPMLLEYILFASIYGGLLTIGLLTIRA 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173 + F+ + + IPYGIA+ + GL Y S +A Sbjct: 121 FLQPVTGVA-FIDRLLERETGIPYGIALGLAGLTVYSGSVWIDIAARS 167 >gi|316933041|ref|YP_004108023.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris DX-1] gi|315600755|gb|ADU43290.1| peptidase A24A prepilin type IV [Rhodopseudomonas palustris DX-1] Length = 174 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 P +VFAA SDL + I NRVS+++L FL+ A + GM + +H+ G V + F Sbjct: 11 FPALMVFAATSDLLTMTISNRVSLLLLAGFLVLAPMSGMSLAVFGMHVGAGAAVLAVAFG 70 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 FA +GGGD K+ + A+WFG+ L FL + ++ GG L++ +L+ R G Sbjct: 71 CFAMGWIGGGDAKVAAAAALWFGFGD-LLDFLLYASLFGGALTLLLLSFRQWPLPYVFAG 129 Query: 135 M-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167 ++ + + IPYGIA++MG L YP + Sbjct: 130 QTWLLRLHAQETGIPYGIALAMGALAVYPQTDWI 163 >gi|86355862|ref|YP_467754.1| prepilin peptidase protein [Rhizobium etli CFN 42] gi|86279964|gb|ABC89027.1| prepilin peptidase protein [Rhizobium etli CFN 42] Length = 170 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 87/170 (51%), Positives = 114/170 (67%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ +AVF+I P CL AA SDLF+ IPNR+S++++ SFL A G+ + I HL G Sbjct: 1 MIAAAVFVILPLCLAMAAFSDLFTMTIPNRISLILVVSFLALAPFFGLGLQAIGTHLAAG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 IVF CF FAFN+MGGGD KLLT+TA+WFG S L + VAI+GG+L++ IL VR Sbjct: 61 AIVFAACFALFAFNVMGGGDAKLLTATALWFGLNESLLFLMTDVAIIGGLLTLLILLVRG 120 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 +N I G+ VP S L+ KIPYGIAI++GG +++P S LF AL L Sbjct: 121 QSNTILAIGLPVPNSLLLAKKIPYGIAIAIGGFMAFPSSPLFIAALESLK 170 >gi|319785610|ref|YP_004145086.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171498|gb|ADV15036.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 172 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 64/172 (37%), Positives = 99/172 (57%), Gaps = 1/172 (0%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + +F++ PFC++FAA+SD+ S I NRV ++++ F L A L GMD+ H G Sbjct: 1 MLEALIFVVFPFCMLFAAISDMLSMTIANRVPVLLVVVFALVAPLTGMDWAAYGGHFAAG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +V + F FA MGGGD KLL +TA+W G + + +L I+GG+L++ I+ R Sbjct: 61 ALVLAVTFGLFAIGGMGGGDAKLLAATAMWMGLNVNLVEYLVASTIIGGLLTLAIILYRK 120 Query: 126 ITNHIPIFGMFVPKSFLMK-NKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 + F + +PYG+A+ +GGL++YPDS L AL L+A Sbjct: 121 SMLAAVTGQNPFLRHFADEAKGVPYGVALGLGGLLTYPDSPLMIWALARLAA 172 >gi|315497467|ref|YP_004086271.1| peptidase a24a prepilin type IV [Asticcacaulis excentricus CB 48] gi|315415479|gb|ADU12120.1| peptidase A24A prepilin type IV [Asticcacaulis excentricus CB 48] Length = 171 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 3/166 (1%) Query: 6 MVFSAVF-LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64 M+ A+F L+ P CLV+AA+SDL S IPNR+S+++ G F A L+G+ A+H+ + Sbjct: 1 MLIPALFCLVYPACLVWAAVSDLRSMTIPNRLSLILAGVFFPAAVLMGLTPVGFAIHVGI 60 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 GL + +I F FAF ++GGGD KLL +TA+WF T L+FL + A++GG ++ +L R Sbjct: 61 GLGILVIGFAAFAFKVLGGGDAKLLAATALWFH-TDGVLAFLVYTALVGGGFTLLLLLAR 119 Query: 125 MITN-HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 ++P ++ K IPYG+AI GGL++ P S L+ + Sbjct: 120 QTLQIYLPTLPQWLQTLLKPKGDIPYGVAICAGGLLAIPYSDLWPL 165 >gi|260461951|ref|ZP_05810196.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum WSM2075] gi|259032198|gb|EEW33464.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum WSM2075] Length = 172 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 1/172 (0%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + +F++ PFC++FAA+SD+ S I NRVS++++ F L A L GM++ H G Sbjct: 1 MLEALIFVVFPFCMLFAAISDMLSMTIANRVSVLLVIVFALVAPLTGMEWATYGWHFAAG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 ++ + F FA MGGGD KLL +TAVW G + +L +GG+L++ I+ R Sbjct: 61 ALILAVTFGLFAMGGMGGGDAKLLAATAVWMGLNVHLVEYLVVSTFIGGLLTLAIVLYRK 120 Query: 126 ITNHIPIFGMFVPKSFLMKN-KIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 + + F ++ +PYGIA+ +GGL++YPDS L AL L++ Sbjct: 121 SPLAVITGRNPFLRHFAEESAGVPYGIALGLGGLLTYPDSPLMVWALARLAS 172 >gi|163757625|ref|ZP_02164714.1| putative pilus assembly transmembrane protein [Hoeflea phototrophica DFL-43] gi|162285127|gb|EDQ35409.1| putative pilus assembly transmembrane protein [Hoeflea phototrophica DFL-43] Length = 147 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 59/146 (40%), Positives = 87/146 (59%), Gaps = 1/146 (0%) Query: 30 AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLL 89 IPNRVSIV+ SF + A L GMD ++ LIVF +CF FA N+MGGGD K+L Sbjct: 1 MKIPNRVSIVLGLSFFVVAPLSGMDLATFGWSIVAALIVFAVCFALFAVNVMGGGDAKIL 60 Query: 90 TSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM-KNKIP 148 ++ A+W+G++ + FL F I GG+L++ +L +R N + + + +P F + IP Sbjct: 61 SAAALWYGFSSDLVVFLGFTGIYGGLLALVVLMLRANQNILLVSPVPIPMHFFKDRAGIP 120 Query: 149 YGIAISMGGLISYPDSYLFKVALMGL 174 YG+AI +YPDS +F A+ L Sbjct: 121 YGVAIGAAAFSTYPDSRIFIEAIGRL 146 >gi|13474658|ref|NP_106227.1| type IV prepilin peptidase, cpaA [Mesorhizobium loti MAFF303099] gi|14025413|dbj|BAB52013.1| type IV prepilin peptidase; CpaA [Mesorhizobium loti MAFF303099] Length = 175 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 102/174 (58%), Gaps = 1/174 (0%) Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63 + M+ + +F++ PFC++FAA+SD+ S I NRVS++++ F L A L GM++ H Sbjct: 2 APMLEALIFVVFPFCMLFAAISDMLSMTIANRVSVLLVVVFALVAPLTGMEWAAYGWHFA 61 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 G +V + F FA MGGGD KLL +TAVW G + +L ++GG+L++ IL Sbjct: 62 AGALVLAVTFGLFAMGGMGGGDAKLLAATAVWMGLNIHLVEYLVVSTLIGGLLTIAILLY 121 Query: 124 RMITNHIPIFGMFVPKSFLMKN-KIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 R + + F ++ IPYGIA+ +GGL++YPDS L AL L++ Sbjct: 122 RKSPLAVITGRNPFLRHFAEESVGIPYGIALGLGGLLTYPDSPLMVWALASLAS 175 >gi|220922777|ref|YP_002498079.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS 2060] gi|219947384|gb|ACL57776.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS 2060] Length = 168 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 2/169 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M + ++ PF + +AA SDL + IPN +S+V++ F L A LG+ + + LHL G Sbjct: 1 MASVILLVVFPFLMAYAAASDLLTMTIPNALSLVLVAVFPLAALALGLSWSEVGLHLGAG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + + F F F ++GGGD KL +TA+W G+ P ++ ++ GG+L++ IL VR+ Sbjct: 61 GLTLALTFTLFCFGLIGGGDAKLAAATALWLGFEP-LADYVLAASLAGGVLTLLILQVRI 119 Query: 126 IT-NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173 I + + + + +PYGIA++ L+ P + ++ L Sbjct: 120 HPLPRIAVSWPWALRLHDRRTGVPYGIALAFAALVVCPAAPMWHPLLSA 168 >gi|304392386|ref|ZP_07374327.1| peptidase A24A prepilin type IV [Ahrensia sp. R2A130] gi|303295490|gb|EFL89849.1| peptidase A24A prepilin type IV [Ahrensia sp. R2A130] Length = 181 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 4/171 (2%) Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63 +V AV + P C+++A SDL S I N V++ F + A L GM ++ IA+H Sbjct: 8 DHIVAFAVLTVFPLCVIYATFSDLLSMKISNLTCGVLVLGFFILAPLSGMGWQAIAIHSS 67 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 V + ++ FF+ +MGGGD KL+ + ++W G L ++ ++LG ++++ I+ + Sbjct: 68 VAVAALVMGMSFFSMGVMGGGDAKLIAAVSLWLGLG-LTLPYILAASLLGAVVTLVIVGL 126 Query: 124 RMITNHIPIF---GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 R +P + K K IPYG+A+ L+ + S A Sbjct: 127 RKAKPRLPQAFRDWRVMAKVLDRKEGIPYGLALGPAALVVFTISPWVTSAA 177 >gi|300021852|ref|YP_003754463.1| peptidase A24A prepilin type IV [Hyphomicrobium denitrificans ATCC 51888] gi|299523673|gb|ADJ22142.1| peptidase A24A prepilin type IV [Hyphomicrobium denitrificans ATCC 51888] Length = 169 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 91/161 (56%), Gaps = 2/161 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 + I P + FAA +DLF+ IPN +S+ ++G F+ A L M E +H++ L V Sbjct: 7 LLVAIFPIAMAFAAANDLFTMRIPNVISLALIGGFVALAVLTRMPLETFGMHVVCALGVL 66 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ F FAFN++GGGD KL+ + A+W G + L F+ F + GG+L + IL+ R + Sbjct: 67 LLTFALFAFNLLGGGDAKLMAAGALWMG-SAQILPFIAFTTMFGGVLCLLILSYRRMVPA 125 Query: 130 -IPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + + + +PYGIAI+ GL+ +P + LF++ Sbjct: 126 DLLPLPGWAQRLHTAGGPVPYGIAIAASGLMVFPTTELFRM 166 >gi|188581658|ref|YP_001925103.1| peptidase A24A prepilin type IV [Methylobacterium populi BJ001] gi|179345156|gb|ACB80568.1| peptidase A24A prepilin type IV [Methylobacterium populi BJ001] Length = 172 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ PF + +AA SDL + I NRV+ ++ F+L A GM + ++ HL G + +I Sbjct: 12 VVFPFLMAYAAASDLLTMRISNRVTSLVSLGFVLYAVASGMAWADLSRHLAAGALTLLIT 71 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F FFA +GGGD KL STA+W G L +L ++LGG L++ IL+ R P+ Sbjct: 72 FFFFARGWIGGGDAKLAASTALWIGLG-HLLDYLLMASLLGGPLTLTILSARTYPLPKPV 130 Query: 133 FGM-FVPKSFLMKNKIPYGIAISMGGLISYPDS 164 + F + IPYGIA++ L+ P++ Sbjct: 131 LKLPFAVHLHDARTGIPYGIALAAAALLVLPNA 163 >gi|163851901|ref|YP_001639944.1| peptidase A24A prepilin type IV [Methylobacterium extorquens PA1] gi|163663506|gb|ABY30873.1| peptidase A24A prepilin type IV [Methylobacterium extorquens PA1] Length = 169 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 2/153 (1%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ PF + +AA SDL + I NRV+ ++ FLL A + GMD+ ++ HL G + +I Sbjct: 9 VVFPFLMAYAAASDLLTMRISNRVTGLVFVGFLLYAMVSGMDWSDLSRHLAAGSLTLVIT 68 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F FA +GGGD KL STA+W G + +L +ILG L++ I++ R Sbjct: 69 FALFARGWIGGGDAKLAASTALWIGLA-NLPEYLILASILGAPLTLSIVSARKYPLPKLA 127 Query: 133 FGM-FVPKSFLMKNKIPYGIAISMGGLISYPDS 164 F K +PYGIA++ L+ P+S Sbjct: 128 LKFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 160 >gi|170740623|ref|YP_001769278.1| peptidase A24A prepilin type IV [Methylobacterium sp. 4-46] gi|168194897|gb|ACA16844.1| peptidase A24A prepilin type IV [Methylobacterium sp. 4-46] Length = 168 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 2/167 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M + ++ PF + +AA SDL + IPN +S+ +L F + A LLG+ + HL G Sbjct: 1 MASMFLLVVFPFLMAYAAASDLLTMTIPNALSLALLAVFPVAALLLGLSWGEFGEHLAAG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 I + F F F ++GGGD KL +TA+W G+ P ++ ++ GG+L++ IL R Sbjct: 61 GITLAVTFALFCFGLIGGGDAKLAAATALWLGFEP-LADYVLAASLAGGVLTLLILQARA 119 Query: 126 IT-NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 I + + + +PYGIA++ L+ P + L++ L Sbjct: 120 YPLPRIAASWPWALRLHDTRTGVPYGIALAAAALVVCPSAPLWRALL 166 >gi|170749894|ref|YP_001756154.1| peptidase A24A prepilin type IV [Methylobacterium radiotolerans JCM 2831] gi|170656416|gb|ACB25471.1| peptidase A24A prepilin type IV [Methylobacterium radiotolerans JCM 2831] Length = 187 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 2/164 (1%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 + ++ PF + +AA SDL + +IPNR+S+ +L F L A M + I H G +V + Sbjct: 25 LLILFPFLMAYAAASDLLTMLIPNRISLALLAGFALLALTSAMSWTEIGFHCAAGAVVLL 84 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + F FAF I+GGGD KL +TA+W G+ +L ++ GG L++ IL R + Sbjct: 85 VTFTLFAFGIIGGGDAKLAAATALWLGFD-GLGDYLLVASVFGGALTLAILLARTHPLPV 143 Query: 131 PIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173 I M F K IPYGIA++ L+ P++ ++ AL G Sbjct: 144 RIARMPFALHLHDAKTGIPYGIALAAAALLVLPETEVWTRALAG 187 >gi|240139024|ref|YP_002963499.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens AM1] gi|240008996|gb|ACS40222.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens AM1] Length = 172 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 2/152 (1%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + PF + +AA SDL + I NRV+ ++ FLL A + GMD+ ++ HL G + +I F Sbjct: 13 VFPFLMAYAAASDLLTMRISNRVTGLVFVGFLLYAMVSGMDWSDLSRHLAAGSLTLVITF 72 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 FA +GGGD KL STA+W G + +L +ILG L++ I++ R Sbjct: 73 ALFARGWIGGGDAKLAASTALWIGLA-NLPEYLILASILGAPLTLSIVSARKYPLPKLAL 131 Query: 134 GM-FVPKSFLMKNKIPYGIAISMGGLISYPDS 164 F K +PYGIA++ L+ P+S Sbjct: 132 KFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 163 >gi|220922526|ref|YP_002497828.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS 2060] gi|219947133|gb|ACL57525.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS 2060] Length = 168 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 1/158 (0%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 + L+ P + +AA SDL + IPN +S+ ++ F A L+G+D+ +A H G + Sbjct: 3 LLSLVFPAIMAYAAASDLLTMRIPNFISVALIVIFFGLAILVGVDWSTVAWHAAAGATML 62 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT-N 128 ++CF +A +GGGD KL +T +W G+TP L +L V ++GG++ V L++R Sbjct: 63 VVCFLMYALGWIGGGDAKLAAATVLWLGFTPVLLDYLLIVGLVGGMMGVLFLSIRRFPLP 122 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166 + ++ + K +PYGIA++ GL YPDS L Sbjct: 123 AFALTWEWLVRLHDKKAGVPYGIALAAAGLAVYPDSLL 160 >gi|254561619|ref|YP_003068714.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens DM4] gi|254268897|emb|CAX24858.1| type IV prepilin peptidase, cpaA [Methylobacterium extorquens DM4] Length = 172 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 2/153 (1%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ PF + +AA SDL + I NRV+ ++ FLL A + GMD+ ++ HL G + +I Sbjct: 12 VVFPFLMAYAAASDLLTMRISNRVTGLVFVGFLLYALVSGMDWSDLSRHLAAGSLTLVIT 71 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F FA +GGGD KL STA+W G + +L +ILG L++ I++ R Sbjct: 72 FALFARGWIGGGDAKLAASTALWIGLA-NLPEYLILASILGAPLTLSIVSARKYPLPKLA 130 Query: 133 FGM-FVPKSFLMKNKIPYGIAISMGGLISYPDS 164 F K +PYGIA++ L+ P+S Sbjct: 131 LKFPFAVHLHDTKTGVPYGIALAAAALLVLPNS 163 >gi|114705459|ref|ZP_01438367.1| type IV prepilin peptidase, cpaA [Fulvimarina pelagi HTCC2506] gi|114540244|gb|EAU43364.1| type IV prepilin peptidase, cpaA [Fulvimarina pelagi HTCC2506] Length = 169 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 2/166 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M + + + P C++FAA+SD+ + IPNR+ +++ +F + A L M IA+HL G Sbjct: 1 MSYLFLTTVFPLCMIFAAVSDIMTMTIPNRLCLLLALAFPVAALLSNMSTSDIAIHLGFG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 L F++ F FAF ++GGGD KLL +TA W G + L +L LGG++++ I+ R Sbjct: 61 LAAFLLGFAMFAFGLVGGGDAKLLAATAFWIGPAGA-LPYLLVATGLGGLMAIGIIYARN 119 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 + I +F + +PYG+A+ + GL SY DS A+ Sbjct: 120 MAVPI-TGYVFADRLLSQNTGVPYGVALGIAGLYSYADSVYLTAAI 164 >gi|329847251|ref|ZP_08262279.1| type IV leader peptidase family protein [Asticcacaulis biprosthecum C19] gi|328842314|gb|EGF91883.1| type IV leader peptidase family protein [Asticcacaulis biprosthecum C19] Length = 172 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L P L++AA+SDL I NR+++++ G+F A LLG+ I +H V ++ Sbjct: 9 LTYPAYLLWAAVSDLVRMTISNRLNLILAGAFFPAALLLGLSLGDIGIHTAVAAGGLVLG 68 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI-P 131 FA MGGGD KL+ +TA+W G F++ LF+ A+ GG L++ I+ R + P Sbjct: 69 MVLFALRFMGGGDAKLIAATALWLGLD-GFIALLFYTALAGGALTLGIVIARKFFWALAP 127 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168 ++ + K IPYGIAI GGL++ P L+ Sbjct: 128 KLPKWLGQHLEAKTGIPYGIAICAGGLLAIPHGDLWA 164 >gi|167648154|ref|YP_001685817.1| peptidase A24A prepilin type IV [Caulobacter sp. K31] gi|167350584|gb|ABZ73319.1| peptidase A24A prepilin type IV [Caulobacter sp. K31] Length = 170 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 86/159 (54%), Gaps = 3/159 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 A+ L+ P +V AAL D+ S IPN +S+ ++ +F+ A + G I L L GL Sbjct: 7 ALLLVFPALVVIAALKDVTSFTIPNWISLALIAAFVPAALVSGASLSSIGLCLATGLGAL 66 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR--MIT 127 ++ FA +GGGD KL ++A+W GW P+ L F+ + GG L++ IL++R Sbjct: 67 VVGMGMFAAGWIGGGDAKLFAASALWLGW-PATLPFMLTTGLAGGALTLGILSLRSGWFE 125 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166 + +V K IPYG+AI++G L+++P L Sbjct: 126 PILAGSPPWVRKLGANGGDIPYGVAIAVGALVTFPQGAL 164 >gi|254419519|ref|ZP_05033243.1| peptidase, A24 (type IV prepilin peptidase) family [Brevundimonas sp. BAL3] gi|196185696|gb|EDX80672.1| peptidase, A24 (type IV prepilin peptidase) family [Brevundimonas sp. BAL3] Length = 173 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 4/159 (2%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 + P ++ L DL + IPN +S+V+L +F A L+G+ +A+H+ VG I+ Sbjct: 9 LAVFPILMIATGLHDLTTMRIPNWISLVLLATFFPAALLVGLSPVEVAIHVGVGFAALIV 68 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 FA +GGGD K L + +W G T L + AI+GG + +L VR + Sbjct: 69 GMIMFALRWIGGGDAKALAAACLWMGLT-GLAPLLLWTAIVGGGFCLLLLLVRQYYPMVA 127 Query: 132 IFGM---FVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167 ++ + K IPYG+AI++G LI++P+ L Sbjct: 128 PAAFRIGWLARLMEPKGDIPYGVAIAIGALIAFPEGDLV 166 >gi|154250687|ref|YP_001411511.1| peptidase A24A prepilin type IV [Parvibaculum lavamentivorans DS-1] gi|154154637|gb|ABS61854.1| peptidase A24A prepilin type IV [Parvibaculum lavamentivorans DS-1] Length = 187 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 1/169 (0%) Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62 S ++ + ++ P ++F AL DL + IPN +SI ++ F L +G+ + IALH+ Sbjct: 17 ASSVMNMLLLVVFPLAMIFGALWDLTTMTIPNLLSIALVAMFALLVPFVGLALQDIALHV 76 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 GL++ + FA +GGGD K +++ A+W GW+ L +L +I GG+L++ +L Sbjct: 77 AAGLVMLALGMGLFALGWIGGGDAKFVSAIALWIGWSE-LLGYLLLASIFGGVLTLLLLG 135 Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 R + + ++ + K+ IPYG+A++ L+ + + FK A Sbjct: 136 FRKMPLPSFMHREWLLRLHDRKSGIPYGVALAAAALVMFERTVWFKFAA 184 >gi|295690800|ref|YP_003594493.1| peptidase A24A prepilin type IV [Caulobacter segnis ATCC 21756] gi|295432703|gb|ADG11875.1| peptidase A24A prepilin type IV [Caulobacter segnis ATCC 21756] Length = 170 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 3/167 (1%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + ++ ++ P + AL DL S IPN VS+ ++ +F+ A + G+ I + L VGL Sbjct: 4 LQISLLMVFPALAIVGALKDLTSYTIPNWVSLALIAAFVPAALISGVSLPQIGVCLAVGL 63 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 ++ FA +GGGD KLL + A+W GW P+ L FL + + GG L+ IL +R Sbjct: 64 GALVLGMGMFAAGWIGGGDGKLLAACALWMGW-PAVLPFLLYTGLAGGALTFAILALRSG 122 Query: 127 TNHIPIFG--MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 + G +V + +PYG+AI+ G LI++P + L + L Sbjct: 123 WVAPMVAGGPAWVRRLGQSGGDLPYGVAIAAGALIAFPKALLAQGVL 169 >gi|220923696|ref|YP_002498998.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS 2060] gi|219948303|gb|ACL58695.1| peptidase A24A prepilin type IV [Methylobacterium nodulans ORS 2060] Length = 171 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 2/169 (1%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M S + ++ F +++A ++DL + I N + +V+L + + A L G I Sbjct: 1 MTVSDLAAPCGMILFAFTVIYAGITDLTTMKIRNGLVLVLLLGYGILAPLAGFSLPQIGW 60 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 + V + F FFAF +GGGD K +T +W G S + +L + A+LGG+ ++ + Sbjct: 61 SAALSFGVLLAAFIFFAFGWIGGGDAKFAAATVLWLGIDHSPV-YLVYTALLGGLFTLLL 119 Query: 121 LTVRMITNHIPIFG-MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168 L R + G ++ + + +PYG+A+++ L+ +P ++ Sbjct: 120 LQFRTRALPAFLNGSTWLVRLHSPTSGVPYGVAMALAALVVFPQTHWMT 168 >gi|294012228|ref|YP_003545688.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum UT26S] gi|292675558|dbj|BAI97076.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum UT26S] Length = 176 Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 3/157 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ V L F LV AA+ D+ I N ++++G + G + I + V Sbjct: 1 MMKDLVLLAVSFVLVAAAVEDMARLRISNIFPLLVIGLYAAWVAAAGWE-NDIWRNGTVF 59 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 L +F + FA MGGGDVKL+++ A+WF W + + +L +V + GG+L++ ++ R Sbjct: 60 LGMFALGCGLFAMRAMGGGDVKLMSACALWFDWAGA-VPWLVYVTVGGGVLALVLMAGRR 118 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162 + G + F K IPYG+AI++G +++ Sbjct: 119 LVPQSWREGSSIA-LFDKKGPIPYGVAIALGTIMALH 154 >gi|302381758|ref|YP_003817581.1| peptidase A24A prepilin type IV [Brevundimonas subvibrioides ATCC 15264] gi|302192386|gb|ADK99957.1| peptidase A24A prepilin type IV [Brevundimonas subvibrioides ATCC 15264] Length = 170 Score = 99.6 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 2/156 (1%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 ++ AALSDL + IPN +S +++ F AF +G+ + L++ V + ++ FA Sbjct: 16 VIVAALSDLTTMKIPNWISGLLIVGFFPAAFAVGLSPAEVGLNVAVAVGALLVGMGLFAG 75 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM-ITNHIPIFGMFV 137 I+GGGD K++ +T +W G+ + + FL + + GG+L + ++ R + +V Sbjct: 76 RIIGGGDAKVMAATCLWLGFGGAGM-FLLYTGLFGGLLCLALIAARKSVVLPAHATPGWV 134 Query: 138 PKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173 + +PYG+AI G L ++P S L G Sbjct: 135 ATLMEPRGDLPYGVAICAGALAAFPSSPLLLTYAAG 170 >gi|254293212|ref|YP_003059235.1| peptidase A24A prepilin type IV [Hirschia baltica ATCC 49814] gi|254041743|gb|ACT58538.1| peptidase A24A prepilin type IV [Hirschia baltica ATCC 49814] Length = 169 Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 4/171 (2%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ I LV+AA D+F IPN VSI++ FL TA+ + E H LVG Sbjct: 1 MIIPISAGIFAALLVYAACHDVFDRTIPNWVSILIAILFLPTAYFAELSLEQFGWHALVG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 I II F I GGGD KL+ + ++W G +FL AI GG++++ ++ +R Sbjct: 61 AIALIIGIALFYLRIWGGGDAKLVAAVSLWMGLQAEP-TFLAAFAIAGGLIALPLIIIRR 119 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 + L K+PYG+AI+ G + P S++ A+ + A Sbjct: 120 MKFE---PKNDRLAKMLDTKKVPYGVAIAAGAFWAAPQSFVLMQAINSIGA 167 >gi|304320645|ref|YP_003854288.1| pilus assembly protein prepilin peptidase subunit [Parvularcula bermudensis HTCC2503] gi|303299547|gb|ADM09146.1| pilus assembly protein prepilin peptidase subunit [Parvularcula bermudensis HTCC2503] Length = 164 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 2/161 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M S + L+ P L AA+ DL S IPNRV+ + ++ L A +G+ + + + Sbjct: 1 MFSSVISLVYPALLSVAAVYDLTSFKIPNRVTAALAVAWPLCALAVGIPFTMALSSVAFA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + F FA +GGGDVKLL +T +W G + L F+ + I GG L+ +L+ R Sbjct: 61 FGILAAGFALFAIGKLGGGDVKLLAATTLWVGPALA-LEFVLWTMIFGGGLAFALLSFRR 119 Query: 126 ITNHIPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSY 165 + + + ++ + K +PYG+AI+ GL+ + + Sbjct: 120 LPLPVNVMSTGWLFDLYNRKKDMPYGVAIAASGLMLWSKTP 160 >gi|150377242|ref|YP_001313837.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419] gi|150031789|gb|ABR63904.1| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419] Length = 170 Score = 96.9 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 78/158 (49%), Gaps = 2/158 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 F + + +A + D+ + I NR+ + ++ +F + A +G+ ++ I ++V +V Sbjct: 9 LAFFLFAGVMTYAGIRDVATMTISNRLVVFLVIAFAVLAPAVGLSFDTITSSIVVASVVL 68 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 F FA +GGGD KLL +W G L F+ + +++G L++ +L +R Sbjct: 69 ACTFVLFAAGWIGGGDAKLLPVAVLWLG-ADLALPFVLYTSVIGAALTLGLLQLRRAPLP 127 Query: 130 IPIFG-MFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166 + + + + + IPYG A++ L+ P+S+ Sbjct: 128 LVLKKNAWSKRLLDRETGIPYGAAMAPAALLLLPESHW 165 >gi|218530652|ref|YP_002421468.1| peptidase A24A prepilin type IV [Methylobacterium chloromethanicum CM4] gi|218522955|gb|ACK83540.1| peptidase A24A prepilin type IV [Methylobacterium chloromethanicum CM4] Length = 165 Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 2/151 (1%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 PF + +AA+SDL + I NRV+ ++L +F+L A GM +ALH+ G +V F Sbjct: 14 FPFLMAYAAVSDLLTMRISNRVTSLVLFTFVLYALADGMMLAELALHIAAGCLVLAAAFV 73 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 FA +GGGD KL +W G +L ++ GG+L++ IL R + Sbjct: 74 MFARGWIGGGDAKLAAGATLWLGI-EYVAEYLIAASVFGGVLTLVILFARAYPLPMATLR 132 Query: 135 M-FVPKSFLMKNKIPYGIAISMGGLISYPDS 164 + F + IPYGIA++ L P + Sbjct: 133 LPFAVNLHDSRTGIPYGIALAAAALTVLPHA 163 >gi|307294435|ref|ZP_07574279.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1] gi|306880586|gb|EFN11803.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1] Length = 176 Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 3/156 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ V L L+ AA+ D+ I N ++++G + G + I + V Sbjct: 1 MMKDVVLLAVSLVLIAAAVEDMARLRISNIFPLLVIGLYAAWVAAAGWE-NDIWRNGTVF 59 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 L +F + FA MGGGD+KL+++ A+WF W + +L +V + GG+L++ ++ R Sbjct: 60 LGMFALGCGLFALRWMGGGDIKLMSTCALWFDW-QGVVPWLVYVTVGGGVLALVLMIGRR 118 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + G + F K IPYG+AI++G +++ Sbjct: 119 LVPQAVREGSSIA-LFDKKGPIPYGVAIALGTIMAL 153 >gi|16127177|ref|NP_421741.1| pilus assembly protein CpaA [Caulobacter crescentus CB15] gi|221235978|ref|YP_002518415.1| pilus assembly prepilin peptidase CpaA [Caulobacter crescentus NA1000] gi|7208423|gb|AAF40190.1|AF229646_2 CpaA [Caulobacter crescentus CB15] gi|13424575|gb|AAK24909.1| pilus assembly protein CpaA [Caulobacter crescentus CB15] gi|220965151|gb|ACL96507.1| pilus assembly prepilin peptidase CpaA [Caulobacter crescentus NA1000] Length = 170 Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 + LI P + AL DL S IPN +S+ ++ +F+ A + G I L L VGL + Sbjct: 8 LLLIFPALAIVGALKDLTSYTIPNWISLALIAAFVPAALVSGAPLSQIGLCLAVGLGALV 67 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR--MITN 128 + FA +GGGD KL A+W GW P+ L+F+ + + GG+L+ IL +R + Sbjct: 68 LGMGMFAAGWIGGGDGKLFAVCALWLGW-PAALTFMLYTGLAGGVLTFAILGLRSGWLAP 126 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166 + ++ K +PYG+AI++G L ++P L Sbjct: 127 AVAGGPAWLRKLGTTGGDLPYGVAIAVGALAAFPQGAL 164 >gi|227818613|ref|YP_002822584.1| CpaA2 pilus assembly protein [Sinorhizobium fredii NGR234] gi|227337612|gb|ACP21831.1| CpaA2 pilus assembly protein [Sinorhizobium fredii NGR234] Length = 170 Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 2/163 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 FL+ + +A + D+ + I NR+ +L +F + A L G+D +I +LV V Sbjct: 9 LAFLLFAGTMTYAGIKDVMTMTISNRLVGFLLVAFAVLAPLAGVDLPMIWSSILVASAVL 68 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 F FFA +GGGD KLL +W G + L F+ ++LG +L++ ++ R + Sbjct: 69 AFTFTFFALGWIGGGDAKLLPVAVLWLGAGLA-LPFVVCASVLGAVLTLSLMQFRKMPLP 127 Query: 130 IPI-FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 + + + + + IPYG A++ L+ P+S+ F L Sbjct: 128 VLLQKRAWSSRLHTPQTGIPYGAAMAPAALLLLPESHWFAALL 170 >gi|16263310|ref|NP_436103.1| CpaA2 pilus assembly protein [Sinorhizobium meliloti 1021] gi|14523989|gb|AAK65515.1| CpaA2 prepilin peptidase [Sinorhizobium meliloti 1021] Length = 170 Score = 94.2 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 2/162 (1%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 FL+ + +A + D+ + I NRV + ++ +F + A G++ + ++V V Sbjct: 10 AFLLFAGAMTYAGIRDVATMTISNRVVVFLVIAFAILAPAAGLNLATVMSSVVVASAVLA 69 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 F FA +GGGD KLL +W G L F+ + +++G L+V +L +R + + Sbjct: 70 CTFVLFAAGWIGGGDAKLLPVAVLWLG-ADLALPFILYTSVIGAALTVGLLQLRRVPLPL 128 Query: 131 PIFG-MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 + + + + IPYG A++ L+ P+S+ V L Sbjct: 129 ALKKNAWAKRLLDRETGIPYGAAMAPAALLLLPESHWCSVLL 170 >gi|307304371|ref|ZP_07584122.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C] gi|306902573|gb|EFN33167.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti BL225C] Length = 170 Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 2/162 (1%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 FL+ + +A + D+ + I NR+ + ++ +F + A G++ + ++V V Sbjct: 10 AFLLFAGAMTYAGIRDVATMTISNRLVVFLVIAFAILAPAAGLNLATVMSSVVVASAVLA 69 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 F FA +GGGD KLL +W G L F+ + +++G L+V +L +R + + Sbjct: 70 CTFVLFAAGWIGGGDAKLLPVAVLWLG-ADLALPFILYTSVIGAALTVGLLQLRRVPLPL 128 Query: 131 PIFG-MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 + + + + IPYG A++ L+ P+S+ V L Sbjct: 129 ALKKNAWAKRLLDRETGIPYGAAMAPAALLLLPESHWCSVLL 170 >gi|36958869|gb|AAQ87294.1| CpaA [Sinorhizobium fredii NGR234] Length = 194 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 2/163 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 FL+ + +A + D+ + I NR+ +L +F + A L G+D +I +LV V Sbjct: 33 LAFLLFAGTMTYAGIKDVMTMTISNRLVGFLLVAFAVLAPLAGVDLPMIWSSILVASAVL 92 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 F FFA +GGGD KLL +W G L F+ ++LG +L++ ++ R + Sbjct: 93 AFTFTFFALGWIGGGDAKLLPVAVLWLG-AGLALPFVVCASVLGAVLTLSLMQFRKMPLP 151 Query: 130 IPI-FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 + + + + + IPYG A++ L+ P+S+ F L Sbjct: 152 VLLQKRAWSSRLHTPQTGIPYGAAMAPAALLLLPESHWFAALL 194 >gi|307318078|ref|ZP_07597514.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83] gi|306896119|gb|EFN26869.1| peptidase A24A prepilin type IV [Sinorhizobium meliloti AK83] Length = 170 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 2/162 (1%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 FL+ + +A + D+ + I NR+ + ++ +F + A G+ + ++V V Sbjct: 10 AFLLFAGAMTYAGIRDVATMTISNRLVVFLVIAFAILAPAAGLSLATVMSSVVVASAVLA 69 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 F FA +GGGD KLL +W G L F+ + +++G L+V +L +R + + Sbjct: 70 CTFVLFAAGWIGGGDAKLLPVAVLWLG-ADLALPFILYTSVIGAALTVGLLQLRRVPLPL 128 Query: 131 PIFG-MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVAL 171 + + + + IPYG A++ L+ P+S+ V L Sbjct: 129 ALKKNAWAKRLLDRETGIPYGAAMAPAALLLLPESHWCSVLL 170 >gi|83859355|ref|ZP_00952876.1| pilus assembly protein CpaA [Oceanicaulis alexandrii HTCC2633] gi|83852802|gb|EAP90655.1| pilus assembly protein CpaA [Oceanicaulis alexandrii HTCC2633] Length = 172 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 2/170 (1%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M+ M+ + L F ++ A D+ S IPN V ++ ++L A LG+ + Sbjct: 1 MRAPAMISNIALLGFAFLMLCAVWYDVRSFTIPNWVPGALIAGWVLAAPFLGLSWMDAGF 60 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 LL GL V + +A +GGGDVKLL + A+WFGW P L+F+ GG+L+V + Sbjct: 61 SLLTGLGVLALGMALWAPGWVGGGDVKLLAAGALWFGW-PDGLAFVLIAVAAGGVLAVIL 119 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKN-KIPYGIAISMGGLISYPDSYLFKV 169 + +R + + +PI + + L + +PY IAI+ G L+ P + +F V Sbjct: 120 VILRQMAHLLPISSDRLGSTALAQGAPVPYAIAIAAGALLVLPQAQMFAV 169 >gi|114568968|ref|YP_755648.1| peptidase A24A, prepilin type IV [Maricaulis maris MCS10] gi|114339430|gb|ABI64710.1| peptidase A24A, prepilin type IV [Maricaulis maris MCS10] Length = 165 Score = 92.3 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 2/165 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ L ++ AA+ D +IPN + ++L +F + A G+ + + HLL G Sbjct: 1 MLIQITILALAGLMLAAAIFDATKFIIPNWLCGLVLLTFPIAAVAAGLGWAEVGNHLLGG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + +I F FA +GGGD KL + A+WFGW P FL+FL + GG+L V +L +R Sbjct: 61 ALALVIGFALFAPGWVGGGDAKLFAAAALWFGW-PEFLAFLIHTVLAGGVLVVILLALRW 119 Query: 126 ITNHIPIFGMFVP-KSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + +P+ + + +PYGIAI+ G S P++ + Sbjct: 120 LAPRLPVLATRTEGTALAVNAPVPYGIAIAAGVFWSLPNTVFWAA 164 >gi|294012431|ref|YP_003545891.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum UT26S] gi|292675761|dbj|BAI97279.1| Flp pilus assembly protein protease CpaA [Sphingobium japonicum UT26S] Length = 157 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 14/151 (9%) Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFN 79 A+++DL S +I NR+++ + G L G+ + +A+ LL GLIVF+ FA Sbjct: 20 VASVTDLRSRIISNRLNLTVAGLAPLWWLACGLPLWPGMAVQLLAGLIVFMAFAVLFALG 79 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139 MGGGDVKLL + A+WF W + LS L +A+LGGI+++ + +T + Sbjct: 80 CMGGGDVKLLGALALWFPW-QATLSMLMLMAVLGGIVTIVTVVHHRMTRRL--------- 129 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170 + +IPYGIAIS L + Y+ + A Sbjct: 130 ---GQPQIPYGIAISFAALWLLGERYINQFA 157 >gi|23016177|ref|ZP_00055936.1| COG4960: Flp pilus assembly protein, protease CpaA [Magnetospirillum magnetotacticum MS-1] Length = 160 Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 9/146 (6%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L+ AA DL S I NRV + +L +F+ A G D HL G++ F+ Sbjct: 11 MVFVAALLDAAWGDLRSLRIRNRVPLTILAAFVPWALCAGYDGGQWLAHLGTGVLCFVAA 70 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F+ + GGGD KL+ + +W G + FL +A+ GG++++ L VR P Sbjct: 71 AILFSLGLWGGGDAKLVPAVVLWVGPSD-LPRFLLIMAVAGGLVALAALVVRRAEAGGPH 129 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGL 158 M + IPYGIAI+ GGL Sbjct: 130 PVM--------RGHIPYGIAIAAGGL 147 >gi|238762405|ref|ZP_04623376.1| hypothetical protein ykris0001_26500 [Yersinia kristensenii ATCC 33638] gi|238699390|gb|EEP92136.1| hypothetical protein ykris0001_26500 [Yersinia kristensenii ATCC 33638] Length = 127 Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 20/145 (13%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+F SD+ I N I + + ++ A+++++ L +I + F Sbjct: 1 MQLLFVCYSDIRHRTISNNFIITIAINTVVLGLAT-----HQAVNIIIPLSALLIGYIIF 55 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 F+++GGGDVKL+T T S L+F+ + AI+GG+ + I GMF Sbjct: 56 YFDLIGGGDVKLITVLLFALTTTQS-LNFILYTAIMGGV--------------VMIIGMF 100 Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161 V + + + +PY +AIS G L+S+ Sbjct: 101 VNREDIKQRGVPYAVAISAGFLLSF 125 >gi|123443819|ref|YP_001007790.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090780|emb|CAL13662.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 140 Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 23/161 (14%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M ++ SA+ ++ L+F SD+ I N+ I + + L F + + Sbjct: 1 MDTLNILISALLMLQ---LLFVCYSDIRYRTISNKFIITIAINALALGFTM-----NHTV 52 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 ++++ +I + F F+++GGGDVKL+T + S L F+ + A++GG+ Sbjct: 53 NIVIPFSALLIGYSLFHFHLIGGGDVKLITVLLLALTTAKS-LDFILYTAMMGGV----- 106 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + I GM V + + + +PY +AIS G L+S+ Sbjct: 107 ---------VMIIGMLVNREDIQQRGVPYAVAISAGFLLSF 138 >gi|307293448|ref|ZP_07573294.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1] gi|306881514|gb|EFN12730.1| peptidase A24A prepilin type IV [Sphingobium chlorophenolicum L-1] Length = 150 Score = 84.6 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 14/151 (9%) Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFN 79 A+++DL S +I NR+++ + L G+ + +A+ LLV LIVFI+ FA Sbjct: 13 VASVTDLRSRIISNRLNLTVAALAPLWWLACGLPLWPGMAVQLLVALIVFIVFAALFALG 72 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139 MGGGDVKLL + A+WF W + LS L +A+LGGI+++ + +T + Sbjct: 73 CMGGGDVKLLGALALWFPW-QATLSMLMLMAVLGGIVTIVTVVHHRMTRRL--------- 122 Query: 140 SFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170 + +IPYGIAIS L + Y+ + A Sbjct: 123 ---GQPQIPYGIAISFAALWLLGERYINQFA 150 >gi|238750894|ref|ZP_04612391.1| hypothetical protein yrohd0001_16460 [Yersinia rohdei ATCC 43380] gi|238710808|gb|EEQ03029.1| hypothetical protein yrohd0001_16460 [Yersinia rohdei ATCC 43380] Length = 140 Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 20/157 (12%) Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64 + S + L+ SD+ +I N+ + + + L+ +F+ + +++ Sbjct: 2 NIFQSLLITFLVMQLLLICYSDIRYRIISNKFVVTIAITALVLSFIT-----YNTVSIVI 56 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 LI + + F FN +GGGDVKL+ + S L+F+ + AI+GG+ Sbjct: 57 PLIALLTGYIIFHFNFIGGGDVKLIAVLLLTLNSGQS-LNFILYTAIMGGV--------- 106 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + I GM + + + + +PY +AIS G L+S Sbjct: 107 -----VMIIGMLINRDDIQQRGVPYAVAISGGFLLSL 138 >gi|110632967|ref|YP_673175.1| peptidase A24A, prepilin type IV [Mesorhizobium sp. BNC1] gi|110283951|gb|ABG62010.1| peptidase A24A, prepilin type IV [Chelativorans sp. BNC1] Length = 170 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 77/161 (47%), Gaps = 2/161 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 L+ +++A + D+ + I NR+ +++ ++++ A L G+ + + ++ Sbjct: 9 VALLLFAGTMIYAGIKDVATMTITNRLVLLLAAAYVVLAPLAGLGVDEMLAAAAAASLML 68 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 F FA +GGGD KL +W G + L ++F+V++ G +L++ ++ R Sbjct: 69 AGTFLLFALGWIGGGDAKLAAVAVLWLGADQT-LPYIFYVSVAGALLTLALIQFRRFPLP 127 Query: 130 IPIFGM-FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + + + + +PYG A++ L+ P++ LF Sbjct: 128 AVLQRLTWTERLHSAAAGVPYGAALAGAALLLLPETALFAA 168 >gi|238789146|ref|ZP_04632934.1| hypothetical protein yfred0001_29860 [Yersinia frederiksenii ATCC 33641] gi|238722678|gb|EEQ14330.1| hypothetical protein yfred0001_29860 [Yersinia frederiksenii ATCC 33641] Length = 127 Score = 82.2 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 20/145 (13%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+ SD+ + NR I + L LG+ +++++ L ++ + F Sbjct: 1 MQLLAICYSDILHRTVSNRFIITIT----LNTIALGLTIHN-TVNIIIPLCSLLVGYIIF 55 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 FN +GGGDVKL+T+ S L F+ + AI+GG+ + GM Sbjct: 56 HFNFIGGGDVKLITALLFSLNLQES-LDFIIYTAIMGGV--------------VMTIGML 100 Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161 + + + K +PY +AIS G L+S Sbjct: 101 INQVDIKKRGVPYAVAISGGFLLSL 125 >gi|332162952|ref|YP_004299529.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604225|emb|CBY25723.1| type IV prepilin peptidase TadV/CpaA [Yersinia enterocolitica subsp. palearctica Y11] gi|325667182|gb|ADZ43826.1| putative tight adherance operon protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862297|emb|CBX72458.1| hypothetical protein YEW_HH31900 [Yersinia enterocolitica W22703] Length = 128 Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 20/145 (13%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+F SD+ I N+ I + + + F + A+++++ +I + F Sbjct: 2 LQLLFVCYSDIRYRTISNKFIITIAINAVALGFTM-----NHAINIVIPFSALLIGYSLF 56 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 F+++GGGDVKL+T + S L F+ + A++GG+ + I GM Sbjct: 57 HFHLIGGGDVKLITVLLLALTTAKS-LDFILYTAMMGGV--------------VMIIGML 101 Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161 V + + + +PY +AIS G L+S+ Sbjct: 102 VNREDIQQRGVPYAVAISAGFLLSF 126 >gi|94497252|ref|ZP_01303824.1| type IV prepilin peptidase, cpaA [Sphingomonas sp. SKA58] gi|94423357|gb|EAT08386.1| type IV prepilin peptidase, cpaA [Sphingomonas sp. SKA58] Length = 157 Score = 81.9 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIV 68 A+ + L+ AA++D+ S +I NR+++ + L G+D + +A LL+G IV Sbjct: 9 ALMIALCALLIAAAITDMRSRIISNRLNMTVALLAPLWWLACGLDVWPGMATQLLLGAIV 68 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 F++ FA +MGGGDVKLL + A+WF W ++ + +A+LGG +++ +L I Sbjct: 69 FVLFAALFALGMMGGGDVKLLGALALWFPW-QVLMALVMLMAVLGGAVTLVVLIHHRIAK 127 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVA 170 + +IPYG+AIS+ L + YL + A Sbjct: 128 K------------AGQPEIPYGVAISLAALWVIGERYLNQFA 157 >gi|83312838|ref|YP_423102.1| Flp pilus assembly protein, protease CpaA [Magnetospirillum magneticum AMB-1] gi|82947679|dbj|BAE52543.1| Flp pilus assembly protein, protease CpaA [Magnetospirillum magneticum AMB-1] Length = 160 Score = 81.1 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 9/145 (6%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L+ AA DL + I NRV + +L +F+ A G+ E LHL G+ F++ Sbjct: 12 VFVVALLDAAWGDLRALRIRNRVPLALLAAFVPAALAGGLSGEDWLLHLGTGMACFVVAA 71 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 F+ + GGGD KL+ + +W G + FL +A++GG++++ L R Sbjct: 72 ILFSLGVWGGGDAKLVPAVTLWLGPA-ALPRFLLVMAVVGGLVALAALVRRRAEAGSLRP 130 Query: 134 GMFVPKSFLMKNKIPYGIAISMGGL 158 + + +PYGIAI+ GGL Sbjct: 131 AL--------RTHVPYGIAIAAGGL 147 >gi|85373133|ref|YP_457195.1| type IV prepilin peptidase, cpaA [Erythrobacter litoralis HTCC2594] gi|84786216|gb|ABC62398.1| type IV prepilin peptidase, cpaA [Erythrobacter litoralis HTCC2594] Length = 167 Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 15/154 (9%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82 +DL S I N ++ + L + G+D + +A L V LI F IC FA MG Sbjct: 23 FTDLRSRQIGNWLNGAIALGAPLFWWSSGLDLWPGVAWQLGVALITFAICAGLFAMRWMG 82 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142 GGDVKLLT+ A+W F + + +A+LGG+L++ +I + Sbjct: 83 GGDVKLLTALALWIAPA-LFFNLIVIMALLGGVLTLLFGMWHLI------------RRQR 129 Query: 143 MKNKIPYGIAISMGGLISYPDSYLFKVALMGLSA 176 + IPYG+AIS GL ++ F +A ++A Sbjct: 130 ERLAIPYGVAISAAGLWIL-TTHYFPLAQASIAA 162 >gi|103486619|ref|YP_616180.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256] gi|98976696|gb|ABF52847.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256] Length = 162 Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 14/170 (8%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVG 65 + + + ++ AA+SD+ S I N +++ M + + G+ + + + Sbjct: 6 IALGLMAVLGLMMIAAAVSDIRSRTISNELNVAMAILAVPFWVVSGLTLWPDVPIQFGAA 65 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 L+VF++ FA MGGGDVK++ + +W P L L +AI GGILS+ +L Sbjct: 66 LLVFLVFALLFAIGAMGGGDVKMICAVMLWIPL-PLVLPMLMVMAIGGGILSLIMLIHMK 124 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 + + ++PYG+AI+ GL + YL + +GLS Sbjct: 125 L------------RPSERPVEVPYGVAIAAAGLWALHQHYLNQFQAIGLS 162 >gi|114800034|ref|YP_761693.1| pilus assembly protein CpaA [Hyphomonas neptunium ATCC 15444] gi|114740208|gb|ABI78333.1| pilus assembly protein CpaA [Hyphomonas neptunium ATCC 15444] Length = 171 Score = 80.3 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 5/163 (3%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 MV +A FL V AAL D+ IPN +++ + G F+ A + G+ E+I HL+ G Sbjct: 4 MVLAAFFL---SLCVVAALYDINQLKIPNWLNLTIAGLFIPAAAVSGLPLEIIGGHLMAG 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + F++ F FAF I GGGD K++ + +W G +F F +AI GGI ++ IL VR Sbjct: 61 GLAFVVAFGLFAFRIFGGGDAKMIPAVVLWMGPEAAFAF-AFKMAIAGGICAMLILAVRR 119 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168 T + G F+ F K +PYG+AI+ G +++ S L Sbjct: 120 TTPAEAVPG-FMRAPFQDKASVPYGVAIAAGAILAGSASPLLA 161 >gi|255597443|ref|XP_002536775.1| conserved hypothetical protein [Ricinus communis] gi|223518589|gb|EEF25609.1| conserved hypothetical protein [Ricinus communis] Length = 169 Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 1/169 (0%) Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64 ++ A+ + L A+ D+ + +P R + + F A ++ + H+ + Sbjct: 2 PLLSLALRAVALAVLFSLAVVDVRARRLPTRSVLALGLLFFADALVVHRSASDVLSHVAL 61 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 +VF IC FA MGGGD KL + +W G P L +++ G ++++ L + Sbjct: 62 AGVVFAICAVLFALGWMGGGDAKLAAAIFLWAGL-PLSWPALVLISVSGTVVALVSLATQ 120 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173 + + F +PYG+A++ GG F + + Sbjct: 121 RLDPQHRARAVRALAMFSGTRGVPYGVALAAGGTAVIGLPAWFSLVAVR 169 >gi|238782883|ref|ZP_04626912.1| hypothetical protein yberc0001_35150 [Yersinia bercovieri ATCC 43970] gi|238716306|gb|EEQ08289.1| hypothetical protein yberc0001_35150 [Yersinia bercovieri ATCC 43970] Length = 140 Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 20/139 (14%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82 SD+ +I NR + + + L F ++ + +++ L + + F F ++G Sbjct: 20 CYSDIRHRIISNRFIMTIAINTLALGF-----FQYHRVSIIIPLFALVTGYILFNFKLIG 74 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142 GGDVKL+T + S L+F+ + AI+GG+ + I GM + ++ + Sbjct: 75 GGDVKLITVLLLALTAEQS-LNFILYTAIMGGV--------------VMIIGMLINRADI 119 Query: 143 MKNKIPYGIAISMGGLISY 161 + +PY +AI+ G L+S Sbjct: 120 QQRGVPYAVAITGGFLLSL 138 >gi|153949206|ref|YP_001399596.1| type IV prepilin peptidase family protein [Yersinia pseudotuberculosis IP 31758] gi|152960701|gb|ABS48162.1| type IV prepilin peptidase family [Yersinia pseudotuberculosis IP 31758] Length = 132 Score = 77.6 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 20/149 (13%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 ++ L+F SD+ +I N+ I + + ++ + + +++ ++ Sbjct: 1 MVLIVSQLLFVCYSDIRHRIISNKFVISIAFNAIILILVT-----HHTVSIIIPIVALFF 55 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 + F FN+MGGGDVKL+T + S L+F+ + AI+GG++ + Sbjct: 56 GYIIFHFNVMGGGDVKLITVLLLALTAEQS-LNFIIYTAIMGGVVMLV------------ 102 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 G+ + ++ + K IPY IAI+ G L+S Sbjct: 103 --GLLINRADIQKRGIPYAIAITAGFLLS 129 >gi|186896806|ref|YP_001873918.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis PB1/+] gi|186699832|gb|ACC90461.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis PB1/+] Length = 140 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 76/153 (49%), Gaps = 20/153 (13%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 ++ ++ ++ L+F SD+ +I N+ I + + ++ + + + +++ Sbjct: 3 IIRFSLMVLIVSQLLFVCYSDIRHRIISNKFVISIACNAIILSLVT-----HHTVSIIIP 57 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +I I + F FN+MGGGDVKL+T+ + S L+F+ + A++GGI Sbjct: 58 IIALFIGYIIFHFNVMGGGDVKLITALLLALTAEQS-LNFIIYTAVMGGI---------- 106 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + + G+ + + + K +PY +AI+ G L Sbjct: 107 ----VMVVGLLINRVDIQKRGVPYAVAITAGFL 135 >gi|154244239|ref|YP_001415197.1| peptidase A24A prepilin type IV [Xanthobacter autotrophicus Py2] gi|154158324|gb|ABS65540.1| peptidase A24A prepilin type IV [Xanthobacter autotrophicus Py2] Length = 158 Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 9/153 (5%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 P L +D+ +IPN V +L F A L ++L LLV + V + F Sbjct: 12 YPTALCTCIGTDIARRIIPNTVIAALLIGFATLAILT--PLPDLSLRLLVAVAVTALGFS 69 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 FA N++G GD KL +W L F+ ++GG+L++ L + + + Sbjct: 70 LFAENVVGAGDAKLAGVLMLWTEPAQLPL-FVLACGLIGGVLTLAALAMHRPADRL---- 124 Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167 V + IPYG+A++ GL+ +P S L Sbjct: 125 --VGTIAVPGQTIPYGVALAGAGLLLHPYSSLL 155 >gi|326388866|ref|ZP_08210448.1| type IV prepilin peptidase, cpaA [Novosphingobium nitrogenifigens DSM 19370] gi|326206466|gb|EGD57301.1| type IV prepilin peptidase, cpaA [Novosphingobium nitrogenifigens DSM 19370] Length = 161 Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 14/147 (9%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82 +DL I N ++ + L + G+ + +AL L + + F + FA MG Sbjct: 23 FTDLRRRQIDNWLNATVALGAPLFWWASGLSLWPGVALQLALAVGTFAVLAGLFALRAMG 82 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142 GGDVKLLT+ A+W FL L +A+ GG+L++ + V + Sbjct: 83 GGDVKLLTALALWLPVV-LFLRLLLIMALAGGLLTIVLGMWH------------VTRRRK 129 Query: 143 MKNKIPYGIAISMGGLISYPDSYLFKV 169 + +IPYG+AI+ GL + Sbjct: 130 NRLQIPYGVAIAGAGLWILASTDWTHA 156 >gi|51597668|ref|YP_071859.1| hypothetical protein YPTB3370 [Yersinia pseudotuberculosis IP 32953] gi|51590950|emb|CAH22608.1| Putative membrane protein [Yersinia pseudotuberculosis IP 32953] Length = 140 Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 20/153 (13%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 ++ ++ ++ L+F SD+ +I N+ I + + ++ + ++ + +++ Sbjct: 3 IIRFSLMVLIVSQLLFVCYSDIRHRIISNKFVISIAFNAIILSLVM-----HHTVSIIIP 57 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 ++ I + F FN+MGGGDVKL+T+ + S L+F+ + A++GGI Sbjct: 58 IVALFIGYIIFHFNVMGGGDVKLITALLLALTAEQS-LNFIIYTAVMGGI---------- 106 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + + G+ + + + K +PY +AI+ G L Sbjct: 107 ----VMVVGLLINRVDIQKRGVPYAVAITAGFL 135 >gi|167836691|ref|ZP_02463574.1| peptidase A24A, prepilin type IV [Burkholderia thailandensis MSMB43] Length = 166 Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 2/142 (1%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 ++ A+SDL +PN + + + AFL G +A H + G I F + + F Sbjct: 13 VIALAVSDLRFRRLPNLSVAALAALYCVHAFLAGSHAPELAAHAVAGGIAFAVAAVMWRF 72 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 + GGD KL + W+ F V++ G ++ + +LT + + +++ Sbjct: 73 GWIAGGDAKL-AAVVFWWAGLAHAAGVFFTVSVCGLVIGLAVLTAGAMLRRVAHAPLWL- 130 Query: 139 KSFLMKNKIPYGIAISMGGLIS 160 S +PYGIA+++GGL + Sbjct: 131 TSLAPSRGVPYGIALALGGLQA 152 >gi|119566855|gb|ABL84263.1| TadV [Yersinia ruckeri] Length = 140 Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 20/141 (14%) Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80 +A +D+ +I N ++ S L TA Y ++ L+ LI+ I F F F + Sbjct: 18 WACYTDIRYRIIGND----LIVSMLFTAMAFSFSYRG-SISLIFPLIILTIGFIIFIFGL 72 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140 +GGGDVK++T A ++ F+ + AI+GG+ + I G+ + +S Sbjct: 73 IGGGDVKMITVLACTLTPMQTY-HFITYTAIMGGV--------------VMIIGLVISRS 117 Query: 141 FLMKNKIPYGIAISMGGLISY 161 + + +PYG+AI+ G +S Sbjct: 118 DIKERGVPYGVAIASGFSLSL 138 >gi|148557763|ref|YP_001265345.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1] gi|148502953|gb|ABQ71207.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1] Length = 157 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 71/144 (49%), Gaps = 14/144 (9%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82 +D+ + I N ++ + ++ ++ G + +AL + V L +F + F +MG Sbjct: 22 WTDIRTRTISNELNAAIALLAIVFWWIAGEALWPDVALRIGVALAIFALFAVLFMLRMMG 81 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142 GGDVK++ + A+W + + + L +A+ GG +++ +L + + Sbjct: 82 GGDVKMIGALALWLPF-HALIVMLTVMALAGGAITLGLLIRQRW------------RPNA 128 Query: 143 MKNKIPYGIAISMGGLISYPDSYL 166 + ++PYG+AI++GGL + L Sbjct: 129 DRPEVPYGVAIAIGGLWVIANGLL 152 >gi|162147489|ref|YP_001601950.1| hypothetical protein GDI_1705 [Gluconacetobacter diazotrophicus PAl 5] gi|209545596|ref|YP_002277825.1| peptidase A24A prepilin type IV [Gluconacetobacter diazotrophicus PAl 5] gi|161786066|emb|CAP55648.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533273|gb|ACI53210.1| peptidase A24A prepilin type IV [Gluconacetobacter diazotrophicus PAl 5] Length = 162 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 12/157 (7%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 V + +I LV+AAL D+ IP++V + + G A L G I +LV + Sbjct: 4 VVDGLVVISTIFLVYAALHDVAVRTIPDQVVVALGGLGATIAILHG----HIVGSILVAI 59 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 VF +CF + F +GGGDVKLL++ ++ F + S++ +A+ GG+L+ F L VR Sbjct: 60 CVFGLCFAIWWFGAIGGGDVKLLSAASLLFPPA-AVPSWILTIAMSGGVLAGFYLMVRHR 118 Query: 127 TNHIPI-------FGMFVPKSFLMKNKIPYGIAISMG 156 P+ +PY +AI+ G Sbjct: 119 VTVGPVRHGCFGRIVRSERWRMRRGGPLPYAVAIAAG 155 >gi|326797325|ref|YP_004315145.1| peptidase A24A prepilin type IV [Marinomonas mediterranea MMB-1] gi|326548089|gb|ADZ93309.1| peptidase A24A prepilin type IV [Marinomonas mediterranea MMB-1] Length = 182 Score = 74.2 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 22/177 (12%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--------YEL 57 M A+ +I F ++ ++DLF I NR+ +++L +L++A L + Sbjct: 1 MFDFAMPVILTFASLWVIVTDLFYRRIHNRLVLMLLVLWLVSAALSLITSDENRSALLAD 60 Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117 L + V ++ FC F MG GDVKL++ +W G L+FL A+ GG+L+ Sbjct: 61 FGYTSLGAVGVLLVGFCLFLVGQMGAGDVKLMSILCLWVGVEQQ-LTFLVVTALAGGVLA 119 Query: 118 VFIL-----------TVRMITNHIPIFGMFVPKSFLMK--NKIPYGIAISMGGLISY 161 +F+ + ++ P F + P +F + +PYG+AIS+G Sbjct: 120 LFLPFISLIELAGAKAILQLSERYPSFKIPAPIAFSREGVKGLPYGLAISVGYFYVL 176 >gi|251789644|ref|YP_003004365.1| peptidase A24A prepilin type IV [Dickeya zeae Ech1591] gi|247538265|gb|ACT06886.1| peptidase A24A prepilin type IV [Dickeya zeae Ech1591] Length = 185 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 21/171 (12%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--------ELI 58 V SA L+ CLV+ SDL IPNR + +L +L + L + Sbjct: 7 VQSAYNLLLVVCLVWCIGSDLLLRRIPNRAVLALLLGWLALSALATAGVTGPLPRLSGSL 66 Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 L L+VF++ F F +G GDVKL++ +W G+ +SF+ AI GGIL++ Sbjct: 67 LQALPGALLVFVVGFLLFLTGRLGAGDVKLMSVLCLWVGYGHQ-ISFVMVTAIAGGILAL 125 Query: 119 FILTVRMITNHIPIFGMFVPKSF------------LMKNKIPYGIAISMGG 157 + + + + + + + IPYGIAI+ G Sbjct: 126 SLPLLNTCSTGVALLIERMNHLLKINITPPPMLSAELSQGIPYGIAIAFGA 176 >gi|152994345|ref|YP_001339180.1| peptidase A24A prepilin type IV [Marinomonas sp. MWYL1] gi|150835269|gb|ABR69245.1| peptidase A24A prepilin type IV [Marinomonas sp. MWYL1] Length = 186 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 26/181 (14%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL------------LGM 53 M + + F V+ L+DLF I N + + +L + A L G Sbjct: 1 MTDLLISSVLMFTSVWVILTDLFYRRIHNILIVGLLLGWCGIAILSFWSVGPYSNIHSGD 60 Query: 54 DYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113 + + V I+ F F MG GDVKL++ +W G+ + FL A++G Sbjct: 61 LLSYLGYSIAGAAGVLIVGFGLFLIGQMGAGDVKLMSVLCLWVGYDNQLV-FLVVTALVG 119 Query: 114 GILSVFILTVR-----------MITNHIPIFGMFVPKSFLMK--NKIPYGIAISMGGLIS 160 G+L++ + + I++ P + P F + +PYG+AIS G Sbjct: 120 GMLALLMPVLSLLEIAGAKVIVQISSRFPRLKIPAPLVFSREGVKGLPYGLAISGGAFYL 179 Query: 161 Y 161 Sbjct: 180 L 180 >gi|238759120|ref|ZP_04620289.1| hypothetical protein yaldo0001_3380 [Yersinia aldovae ATCC 35236] gi|238702668|gb|EEP95216.1| hypothetical protein yaldo0001_3380 [Yersinia aldovae ATCC 35236] Length = 130 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 22/149 (14%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ F L+ +D+ +I N + I + + + F + +++++ L +I Sbjct: 1 MLVFQFLLI--CYTDIRYRVISNGIIITIALNSIGLGFAV-----NNTVNVIIPLFSLLI 53 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 + F ++GGGDVKL+T + T S L F+ + AI+GG + Sbjct: 54 GYIIFHLKLIGGGDVKLITVLLLALTATQS-LDFILYTAIMGGA--------------VM 98 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 I G+FV K + + +PY +AIS+G L+ Sbjct: 99 IIGLFVNKKDIQQRGVPYAVAISLGFLLV 127 >gi|209515949|ref|ZP_03264810.1| peptidase A24A prepilin type IV [Burkholderia sp. H160] gi|209503607|gb|EEA03602.1| peptidase A24A prepilin type IV [Burkholderia sp. H160] Length = 161 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 6/146 (4%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L A+ D+ S +P R +++ + + A + G+ +A HL I F + F Sbjct: 11 LVLASLAVGDIRSRRLPTRAVLLVACLYGVDAAVTGVSIVSLAAHLGAAAIGFALFALLF 70 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPS--FLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 MGGGDVKL + +W G + S + F ++ G++++ + R H Sbjct: 71 RCGWMGGGDVKLAAAVFLWAGPAYAWPVFSIVSFCGLVLGLMALIMGLFRRHATHTFRAS 130 Query: 135 MFVPKSFLMKNKIPYGIAISMGGLIS 160 M +PYG+A+++GG+ + Sbjct: 131 M----QLASPRGVPYGVALALGGIAA 152 >gi|238796998|ref|ZP_04640502.1| hypothetical protein ymoll0001_34110 [Yersinia mollaretii ATCC 43969] gi|238719258|gb|EEQ11070.1| hypothetical protein ymoll0001_34110 [Yersinia mollaretii ATCC 43969] Length = 124 Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 20/139 (14%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82 SD+ ++ N++ I + + L F + + +++ L + + F FN++G Sbjct: 4 CYSDIRHRIVSNKLIITVAITTLALGFA-----KNNTVSIVIPLFALLAGYIIFHFNLIG 58 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142 GGDVKL+T + S L F+ + AI+GG+ + I GM + +S + Sbjct: 59 GGDVKLITVLLLTLTPGQS-LDFILYTAIMGGV--------------VMIIGMLINRSDI 103 Query: 143 MKNKIPYGIAISMGGLISY 161 + +PY +AIS+G L++ Sbjct: 104 QQRGVPYAVAISIGFLLAL 122 >gi|50119732|ref|YP_048899.1| hypothetical protein ECA0787 [Pectobacterium atrosepticum SCRI1043] gi|49610258|emb|CAG73701.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043] Length = 183 Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 21/164 (12%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--------LLGMDYELIALHLLVGLIVF 69 CL++ +DL I N+ +++L +L + L + + L V Sbjct: 16 CLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQSGGLDRLALQKTLWALPGAAAVL 75 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ F F +G GDVKL++ +W G + F+ A+ GG+L++ + + + Sbjct: 76 VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLNTVPTA 134 Query: 130 IP------------IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + M + IPYG+AI+ G + Sbjct: 135 VAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAMYVL 178 >gi|52425836|ref|YP_088973.1| hypothetical protein MS1781 [Mannheimia succiniciproducens MBEL55E] gi|52307888|gb|AAU38388.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 166 Score = 71.1 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 20/151 (13%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 ++LI L++ + +D+ S +I NRV I + + + ++L + + +L G I Sbjct: 31 LYLIAVLQLIYLSWTDIKSRIIGNRVIISLFFTMVALSWL-----KYEQVFVLQGAIGLA 85 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 +CF F +MGGGD KL+ + +SF F A+ G +L Sbjct: 86 VCFILFMLKVMGGGDAKLIAVLMLSIPPA-QLISFFFLTAVFGLLL-------------- 130 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 I G + + + +PYG+AIS G L + Sbjct: 131 IIIGWLFFRQSIKQKGLPYGVAISSGYLATL 161 >gi|22127356|ref|NP_670779.1| hypothetical protein y3482 [Yersinia pestis KIM 10] gi|45442770|ref|NP_994309.1| hypothetical protein YP_3009 [Yersinia pestis biovar Microtus str. 91001] gi|108809088|ref|YP_653004.1| hypothetical protein YPA_3097 [Yersinia pestis Antiqua] gi|108810718|ref|YP_646485.1| hypothetical protein YPN_0553 [Yersinia pestis Nepal516] gi|145597789|ref|YP_001161865.1| hypothetical protein YPDSF_0479 [Yersinia pestis Pestoides F] gi|150260277|ref|ZP_01917005.1| putative prepilin peptidase [Yersinia pestis CA88-4125] gi|165939084|ref|ZP_02227636.1| type IV prepilin peptidase family [Yersinia pestis biovar Orientalis str. IP275] gi|166212075|ref|ZP_02238110.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua str. B42003004] gi|167419298|ref|ZP_02311051.1| type IV prepilin peptidase family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425122|ref|ZP_02316875.1| type IV prepilin peptidase family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466372|ref|ZP_02331076.1| membrane protein [Yersinia pestis FV-1] gi|218927884|ref|YP_002345759.1| hypothetical protein YPO0695 [Yersinia pestis CO92] gi|229837377|ref|ZP_04457540.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Pestoides A] gi|229840589|ref|ZP_04460748.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842861|ref|ZP_04463013.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar Orientalis str. India 195] gi|229900913|ref|ZP_04516037.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Nepal516] gi|270487707|ref|ZP_06204781.1| peptidase, A24 (type IV prepilin peptidase) family protein [Yersinia pestis KIM D27] gi|294502761|ref|YP_003566823.1| hypothetical protein YPZ3_0651 [Yersinia pestis Z176003] gi|21960440|gb|AAM87030.1|AE013951_5 hypothetical [Yersinia pestis KIM 10] gi|45437636|gb|AAS63186.1| putative membrane protein [Yersinia pestis biovar Microtus str. 91001] gi|108774366|gb|ABG16885.1| membrane protein [Yersinia pestis Nepal516] gi|108781001|gb|ABG15059.1| putative membrane protein [Yersinia pestis Antiqua] gi|115346495|emb|CAL19370.1| putative membrane protein [Yersinia pestis CO92] gi|145209485|gb|ABP38892.1| membrane protein [Yersinia pestis Pestoides F] gi|149289685|gb|EDM39762.1| putative prepilin peptidase [Yersinia pestis CA88-4125] gi|165913040|gb|EDR31665.1| type IV prepilin peptidase family [Yersinia pestis biovar Orientalis str. IP275] gi|166206821|gb|EDR51301.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua str. B42003004] gi|166963292|gb|EDR59313.1| type IV prepilin peptidase family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055885|gb|EDR65666.1| type IV prepilin peptidase family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682252|gb|EEO78344.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Nepal516] gi|229690128|gb|EEO82185.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar Orientalis str. India 195] gi|229696955|gb|EEO87002.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705500|gb|EEO91510.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis Pestoides A] gi|262360793|gb|ACY57514.1| hypothetical protein YPD4_0605 [Yersinia pestis D106004] gi|262364738|gb|ACY61295.1| hypothetical protein YPD8_0605 [Yersinia pestis D182038] gi|270336211|gb|EFA46988.1| peptidase, A24 (type IV prepilin peptidase) family protein [Yersinia pestis KIM D27] gi|294353220|gb|ADE63561.1| hypothetical protein YPZ3_0651 [Yersinia pestis Z176003] gi|320016742|gb|ADW00314.1| Type IV prepilin peptidase TadV/CpaA [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 140 Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 70/148 (47%), Gaps = 20/148 (13%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 + ++ L+F SD+ +I N+ I + + ++ + ++ + +++ ++ Sbjct: 8 LIVLIVSQLLFVCYSDIRHRIISNKFIISISFNAIIFSLVM-----HHTVSIIIPIVALF 62 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 I + F FN+MGGGDVKL+T + S L+F+ + A+ + + Sbjct: 63 IGYIIFHFNVMGGGDVKLITVLLLALTAEQS-LNFIIYTAV--------------MGGVV 107 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + G+ + + + K +PY +AI+ G L Sbjct: 108 MVVGLLINRVDIQKRGVPYAVAITAGFL 135 >gi|253687066|ref|YP_003016256.1| peptidase A24A prepilin type IV [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753644|gb|ACT11720.1| peptidase A24A prepilin type IV [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 183 Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 21/164 (12%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--------LLGMDYELIALHLLVGLIVF 69 CL++ +DL I NR +++L +L + L + L V Sbjct: 16 CLLWCISTDLLVRKITNRAVLILLLGWLFFSASHVLQSGALDMLALRKTLWALPGAAAVL 75 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ F F +G GDVKL++ +W G + F+ A+ GG+L++ + + + Sbjct: 76 VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLNTVPTA 134 Query: 130 IP------------IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + M + IPYG+AI+ G + Sbjct: 135 VAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAMYVL 178 >gi|170022936|ref|YP_001719441.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis YPIII] gi|169749470|gb|ACA66988.1| peptidase A24A prepilin type IV [Yersinia pseudotuberculosis YPIII] Length = 140 Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 70/148 (47%), Gaps = 20/148 (13%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 + ++ L+F SD+ +I N+ I + + ++ + + + +++ ++ Sbjct: 8 LMVLIVSQLLFVCYSDIRHRIISNKFVISIACNAIILSLVT-----HHTVSIIIPIVALF 62 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 I + F FN+MGGGDVKL+T+ + S L+F+ + A+ + + Sbjct: 63 IGYIIFHFNVMGGGDVKLITALLLALTAEQS-LNFIIYTAV--------------MGGVV 107 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + G+ + + + K +PY +AI+ G L Sbjct: 108 MVVGLLINRVDIQKRGVPYAVAITAGFL 135 >gi|332188358|ref|ZP_08390083.1| type IV leader peptidase family protein [Sphingomonas sp. S17] gi|332011587|gb|EGI53667.1| type IV leader peptidase family protein [Sphingomonas sp. S17] Length = 161 Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 12/140 (8%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIM 81 + D + I +R + + L + G+ + L + V + +F++ F +M Sbjct: 22 GIEDARTREIADRKNAAIALIAPLWWWASGVPLWPDAMLQIGVAIGLFLLFALAFRVGMM 81 Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141 GGGDVK++ + A+W P + L ++I GGI+++ +L + + Sbjct: 82 GGGDVKMIAALALWLPLGP-LMRMLLLMSIAGGIVTLAMLIDHRLRRSGSDGAI------ 134 Query: 142 LMKNKIPYGIAISMGGLISY 161 ++PYG+AI+M GL+ Sbjct: 135 ----EVPYGVAIAMAGLLIL 150 >gi|238793620|ref|ZP_04637243.1| Flp pilus assembly protein, protease CpaA [Yersinia intermedia ATCC 29909] gi|238727035|gb|EEQ18566.1| Flp pilus assembly protein, protease CpaA [Yersinia intermedia ATCC 29909] Length = 154 Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 20/140 (14%) Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81 SD+ + +I N+ I ++ S + + +++ + L ++ + F F ++ Sbjct: 33 VCYSDICNRIISNKFIISIIFSSIAWGYTT-----NSTVNITIPLFSLLMGYIIFHFKLI 87 Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141 GGGDVKL+T+ + S L F+ + AI+GG+ + I G+ + K Sbjct: 88 GGGDVKLITALLLALTAEQS-LDFIIYTAIMGGV--------------VMIIGLLINKHD 132 Query: 142 LMKNKIPYGIAISMGGLISY 161 + + +PY +AI+MG +S Sbjct: 133 IQQRGVPYAVAITMGFALSL 152 >gi|227114874|ref|ZP_03828530.1| hypothetical protein PcarbP_18015 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 183 Score = 68.8 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 21/169 (12%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--------LLGMDYELIALHLLV 64 ++ CL++ +DL I N+ +++L +L + L + + L Sbjct: 11 VLLMGCLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQSGALDMLALQKALWALPG 70 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 V ++ F F +G GDVKL++ +W G + F+ A+ GG+L++ + + Sbjct: 71 AAAVLVVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLN 129 Query: 125 MITNHIP------------IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + + M + IPYG+AI+ G + Sbjct: 130 TVPTAVAMGIQTANRIFKSRLPMPPALPADLSQGIPYGVAIAFGAMYVL 178 >gi|312115330|ref|YP_004012926.1| peptidase A24A prepilin type IV [Rhodomicrobium vannielii ATCC 17100] gi|311220459|gb|ADP71827.1| peptidase A24A prepilin type IV [Rhodomicrobium vannielii ATCC 17100] Length = 161 Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 52/96 (54%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + S V P LV+AA DL + +IPNR+ +V+ F + A L G+D IA H L Sbjct: 5 LTSTVAAALPVLLVWAAAVDLLTRVIPNRLVLVLAACFAVFALLAGLDAARIASHAGCAL 64 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102 +V + + FA +++GGGD KLL ++W G Sbjct: 65 LVLVCAYGLFAASLLGGGDAKLLAVASLWIGPNALL 100 >gi|261820212|ref|YP_003258318.1| peptidase A24A prepilin type IV [Pectobacterium wasabiae WPP163] gi|261604225|gb|ACX86711.1| peptidase A24A prepilin type IV [Pectobacterium wasabiae WPP163] Length = 183 Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 21/164 (12%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM--------DYELIALHLLVGLIVF 69 CL++ +DL I N+ +++L +L + L + + L V Sbjct: 16 CLLWCISTDLLVRKITNQAVLILLLGWLFFSALYVLQSGALDMVALRKMLWALPGAAAVL 75 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ F F +G GDVKL++ +W G + F+ A+ GG+L++ + + + Sbjct: 76 VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FIMVTALAGGVLALSLPLLNTVPTA 134 Query: 130 IPI------------FGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + + M + IPYG+AI+ G + Sbjct: 135 VALGVQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAIYVL 178 >gi|227326300|ref|ZP_03830324.1| hypothetical protein PcarcW_02894 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 183 Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 21/164 (12%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--------LLGMDYELIALHLLVGLIVF 69 CL++ +DL I N+ +++L +L + L + + L V Sbjct: 16 CLLWCISTDLLVRKITNQAVLILLLGWLFFSASHVLQAGALDMLALRKMLWALPGAAAVL 75 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ F F +G GDVKL++ +W G + F+ A+ GG+L++ + + + Sbjct: 76 VVGFLLFLTGRLGAGDVKLMSVLCLWVGQGHQIV-FVMVTALAGGVLALSLPLLNTVPTA 134 Query: 130 IP------------IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + M + IPYG+AI+ G + Sbjct: 135 VAMGIQTTNRIFKSRLPMPPALPADLSQGIPYGVAIAFGAMYVL 178 >gi|149186253|ref|ZP_01864567.1| type IV prepilin peptidase, cpaA [Erythrobacter sp. SD-21] gi|148830284|gb|EDL48721.1| type IV prepilin peptidase, cpaA [Erythrobacter sp. SD-21] Length = 237 Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 2/98 (2%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82 +DL S I N++++ + L + G+D + + + L + F IC FFA MG Sbjct: 23 FTDLKSRTIGNKLNLAIAAGAPLFWWTTGLDLWPGVGIQLGIAAATFAICTLFFAIRQMG 82 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 GGDVKLLT+ A+WF T +FL + +A+LG +L++ + Sbjct: 83 GGDVKLLTALALWFPPT-NFLGLVLVMAMLGWVLTLVM 119 >gi|296284550|ref|ZP_06862548.1| type IV prepilin peptidase, cpaA [Citromicrobium bathyomarinum JL354] Length = 164 Score = 67.2 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 14/143 (9%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAF 78 V AA++DL S I N ++ + L + + + +AL V + F I FA Sbjct: 19 VTAAITDLRSRRIANWLTGGVALGAPLFWWASSLSLWPGVALQFAVAVAAFAILAVLFAL 78 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 MGGGDVKLLT+ A+W P FL +F +AILGG+L++ ++ Sbjct: 79 RAMGGGDVKLLTALALWIAPLP-FLQLVFVMAILGGVLTLAFGAWHIM------------ 125 Query: 139 KSFLMKNKIPYGIAISMGGLISY 161 + + IPYG+AIS GL Sbjct: 126 RRRKERLAIPYGVAISAAGLWIL 148 >gi|54309658|ref|YP_130678.1| hypothetical protein PBPRA2494 [Photobacterium profundum SS9] gi|46914096|emb|CAG20876.1| Hypothetical membrane protein [Photobacterium profundum SS9] Length = 145 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 14/146 (9%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 + P +++ SD+ I N V + L AF +A ++ +I+F+I Sbjct: 5 LQLMPLLMLWVTYSDIRYRRISNIVCAAVFSLSLTLAF----SQHQLADGIISSIIMFLI 60 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 F FNI+ GD KL ++ AV +S L+F + GG+++V L + Sbjct: 61 SLLLFYFNIVAAGDGKLASAFAVALSP-QQLISALYFTLLFGGVVAVIYLIKYQLIQR-- 117 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGG 157 +S +PYG+AI+ G Sbjct: 118 -------RSPEKARGLPYGVAIACGF 136 >gi|27378602|ref|NP_770131.1| hypothetical protein blr3491 [Bradyrhizobium japonicum USDA 110] gi|27351750|dbj|BAC48756.1| blr3491 [Bradyrhizobium japonicum USDA 110] Length = 171 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 13/169 (7%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M + L+ L++ A D+ + +I N + +V+ ++T + IA Sbjct: 1 MHLMNWIAPTASLLQILLLLYVATIDVATRLIRNEICLVLAFLGIVTQLPNAI---QIAE 57 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 L+ I+F++ F + +GGGDVKLLT+ A+ F T + L A+ GGIL++ Sbjct: 58 SLIAAAILFLLLFVLYTRGGIGGGDVKLLTALAIGFPLT-GVIQLLTVTALAGGILALVH 116 Query: 121 LTVRMITNHIPIFG---------MFVPKSFLMKNKIPYGIAISMGGLIS 160 L +R++ L +PYG+A++ GG+ + Sbjct: 117 LLMRLLPYPRLAPAGSSLMRRVYAVERWRHLRHAPLPYGVAVACGGIWT 165 >gi|327538083|gb|EGF24773.1| hypothetical protein RBWH47_03140 [Rhodopirellula baltica WH47] Length = 234 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +F+ + ++ L A DL + IP+ +S+++ ++++ L + ++ + L G+ Sbjct: 94 LFAIITIVVFSLLAIATACDLRTREIPDWISVLIGVVAIVSSLLGWLGLSIVWV-LAGGV 152 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + +I F F +GGGD KL+ + A+ G + LF +AI GG+LS+ + Sbjct: 153 VGLVIASALFRFAKLGGGDGKLIIALAMLVGPVGILI-VLFGMAITGGVLSLIAML 207 >gi|197106457|ref|YP_002131834.1| Flp pilus assembly protein, protease CpaA [Phenylobacterium zucineum HLK1] gi|196479877|gb|ACG79405.1| Flp pilus assembly protein, protease CpaA [Phenylobacterium zucineum HLK1] Length = 164 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 6/156 (3%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 + ++ LV+AA SD F +IPNRV ++ G++LL L + + L VG+ Sbjct: 10 AFALVLFAASLVWAAASDFFRYLIPNRVCALIAGAYLLAFPALALSAWVGG--LGVGIAA 67 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 + FA +GGGDVKL + ++W G F F ++ G L+V +L+ Sbjct: 68 LALGTILFARGWVGGGDVKLAAALSLWAGPA-LLSGFAFVTSLAGAALAVAMLSPLRRLM 126 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164 P + +P+G+ ++ GG Sbjct: 127 PRPAGETLAEGL---RQPMPFGVPLAAGGGWVLTQH 159 >gi|103488243|ref|YP_617804.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256] gi|98978320|gb|ABF54471.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256] Length = 163 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 3/127 (2%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 SDL IPN + +++ F++ L H + ++ F F GGG Sbjct: 22 SDLRYRRIPNLIPALIVLLFIVGWLLGFPFTGPWWAHGFHFVAALLVGMLLFRFGWFGGG 81 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV--FILTVRMITNHIPIFGMFVPKSFL 142 D KL + A+WF ++ + L +F G ++ + + V P P+ Sbjct: 82 DAKLYAACALWFSFSDALL-LMFVTTASGAVIVLVRALAIVARSIFGSPGAPPDGPRQKR 140 Query: 143 MKNKIPY 149 IPY Sbjct: 141 APRTIPY 147 >gi|87199544|ref|YP_496801.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans DSM 12444] gi|87135225|gb|ABD25967.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans DSM 12444] Length = 157 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 9/154 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 + FL+ V +SD+ + +PN + + + L + L + I G Sbjct: 7 QAIAFLLLLGFAVAGTISDVRNRRLPNWLCLATAVTGLGASLFLLEYGDPIWAFPAHGAA 66 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 I+ FA +GGGD K + A WF + L L V + G +L + +R Sbjct: 67 SLIVGMALFALRWIGGGDAKFYAAVACWFPLRLAAL-LLVTVTLSGVLLLILFFAIRRFR 125 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 +P S +PYG+AI GGL++ Sbjct: 126 G--------LPISRKDGASLPYGVAIGTGGLVAL 151 >gi|172062957|ref|YP_001810608.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6] gi|171995474|gb|ACB66392.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6] Length = 159 Score = 63.8 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 7/148 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L LV A+ DL + NR + + + A L A H+ + ++ Sbjct: 7 LTATLVLVSIAMQDLRERRVSNRAVLAFAMLYPVAAALGREGLAPFAGHVATAAAMLVVF 66 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 +GGGDVKL + +W G P L L V G + +L + Sbjct: 67 GALRHAGWLGGGDVKLAAAVFLWAGP-PLALPVLTIVGTSGAACGLAMLA------GVAR 119 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 P + +PYG+A++ GG ++ Sbjct: 120 QRRVAPAHPMATRGVPYGVALAFGGALA 147 >gi|87199103|ref|YP_496360.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans DSM 12444] gi|87134784|gb|ABD25526.1| peptidase A24A, prepilin type IV [Novosphingobium aromaticivorans DSM 12444] Length = 166 Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 14/139 (10%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFNIMG 82 +D+ I N ++ + + + G+ + IA+ + + F++ FA +MG Sbjct: 27 FTDIRRRQIDNWLNAAIALAAPAYWWAAGLSLWPDIAMQVGLAAATFLVLAGLFALRLMG 86 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142 GGDVKLL++ A+ + F+ L +++LGG L++ Sbjct: 87 GGDVKLLSALAL-WLAPGMFVKLLVIMSLLGGFLTIVFAAWHYTVTR------------R 133 Query: 143 MKNKIPYGIAISMGGLISY 161 KIPYG+AI+ GLI+ Sbjct: 134 RDAKIPYGVAIACAGLITL 152 >gi|85707704|ref|ZP_01038770.1| putative type IV prepilin peptidase, cpaA [Erythrobacter sp. NAP1] gi|85689238|gb|EAQ29241.1| putative type IV prepilin peptidase, cpaA [Erythrobacter sp. NAP1] Length = 165 Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 20/145 (13%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLIVFIICFCFFAFN--- 79 +D+ S I N ++I + + + G + + + L+V I Sbjct: 23 FTDIRSRTISNWLNIAIAAGAPVFWWASGSSLWPDVVWQIGFALVVCAILVGVAYIGYRL 82 Query: 80 ---IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 I+GGGD+KLL + A+WF S+L L+++A+ GG++++ + M Sbjct: 83 NIVILGGGDIKLLGALALWFTPM-SYLGMLWYMALCGGVMAILFVLRLMFLRP------- 134 Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161 + +PYG+AI+ G L+ Sbjct: 135 -----KTRGVLPYGVAIAGGALLVL 154 >gi|78062908|ref|YP_372816.1| peptidase A24A, prepilin type IV [Burkholderia sp. 383] gi|77970793|gb|ABB12172.1| Peptidase A24A, prepilin type IV [Burkholderia sp. 383] Length = 157 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 9/147 (6%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L A DL + NR + + + A L + +A H+ G + ++ Sbjct: 8 VATVLLASLAAQDLRDRRLSNRGVLAFAALYFVAAALARDGFAPLAGHVATGAAMLLLFG 67 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 +GGGDVKL + +W G P+ + GG+L L P+ Sbjct: 68 GMRHAGWIGGGDVKLAAAVFLWAG--PALAFPVLTGVGAGGVLCGVALLASRPRRAAPVR 125 Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLIS 160 + +PYG+A+++GG ++ Sbjct: 126 AV-------ATRGVPYGVALALGGTLA 145 >gi|170703399|ref|ZP_02894176.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10] gi|170131688|gb|EDT00239.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10] Length = 159 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 7/148 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L LV A+ DL + NR + +L+ A L+ A H+ + ++ Sbjct: 7 LTATLVLVSIAMQDLRERRVSNRAVLAFAMLYLVAAALVREGLASFAGHVATAAAMLVVF 66 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 +GGGDVKL + +W G P L L V G + ++ + Sbjct: 67 GGMRHAGWLGGGDVKLAAAVFLWAGP-PLALPVLTIVGASGAACGLAMIA------AVAR 119 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 P + +PYG+A++ GG ++ Sbjct: 120 QRRVAPAHPMATRGVPYGVALAFGGALA 147 >gi|158421905|ref|YP_001523197.1| prepilin peptidase [Azorhizobium caulinodans ORS 571] gi|158328794|dbj|BAF86279.1| prepilin peptidase [Azorhizobium caulinodans ORS 571] Length = 155 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 14/166 (8%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M + + ++ P LV A SDL IPN V + +L F AFL +D + L Sbjct: 1 MSPVLLAEAFASILVPVALVAALASDLSRRTIPNIVVLALLLGFAALAFLGYVD--DLPL 58 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 L++ V + F F+ +++G GD KL +TA+W T L ++ +G +L Sbjct: 59 RLVLAGAVLCVGFALFSEDVIGAGDAKLAAATALWLDPTQFPL-YVLLCGAMGALLVAAA 117 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYL 166 R + +PYG+A++ GL +P S L Sbjct: 118 TVARQQ-----------GWGGRLARGLPYGVALATAGLALFPYSSL 152 >gi|84385686|ref|ZP_00988717.1| hypothetical protein V12B01_26169 [Vibrio splendidus 12B01] gi|84379666|gb|EAP96518.1| hypothetical protein V12B01_26169 [Vibrio splendidus 12B01] Length = 146 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 14/150 (9%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 LI V+ + +D I N +++L + L + ++ L+V Sbjct: 2 YLLILVIVCVYVSATDFLYRKIQNHTLLILLFLQCFLSPLD--------IQIMSFLLVLG 53 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 +A +G GD+K ++ +F+ A GG L+V L + Sbjct: 54 GGLIVYALIWIGAGDIKYAAVLSLTIPLNDLLWAFVM-TAFAGGFLAVIYLVYNKL---- 108 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 I V K+ + IPYGIAIS+G + Sbjct: 109 -ISKRLVRKTSNGQQGIPYGIAISVGFYLV 137 >gi|153834037|ref|ZP_01986704.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio harveyi HY01] gi|148869592|gb|EDL68582.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio harveyi HY01] Length = 162 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 3/124 (2%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ L+ +SD IPN+ +++L +TA L HL GL+ F C Sbjct: 5 LVIWSLLIAIGVSDAQKHRIPNKAVLLLLT--AVTANLAFNANSDGLDHLYGGLVTFAAC 62 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F + F +M GGDVKLL W G + + + + GG++ +F L + + ++ + Sbjct: 63 FVLYLFKVMAGGDVKLLAVIGAWLGLS-NIGEATVGIILAGGVVGLFYLALYVCSSTTSL 121 Query: 133 FGMF 136 F Sbjct: 122 TEQF 125 >gi|288956967|ref|YP_003447308.1| hypothetical protein AZL_001260 [Azospirillum sp. B510] gi|288909275|dbj|BAI70764.1| hypothetical protein AZL_001260 [Azospirillum sp. B510] Length = 155 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 6/152 (3%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 + ++ +A +SD+ IPN +S+ + F + A L + F Sbjct: 5 LSVVLCGLFAWAMVSDIRRRTIPNWISLALAVLFAV-ATAADPGRFDPVLAATAAGLTFA 63 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 I F ++GGGDVKL+T+ A+W G + A++GG+++ L +R + Sbjct: 64 ILLAAFLAGLVGGGDVKLMTAAALWTGLS-GLPGLFLGTALIGGLMAFGALALRGLRRLG 122 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISYP 162 + + +PYG+AI L+S P Sbjct: 123 LLSREGAGEMD----GLPYGVAIGAAALLSIP 150 >gi|115358169|ref|YP_775307.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD] gi|115283457|gb|ABI88973.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD] Length = 159 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 7/148 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L LV A+ DL + NR + +L+ A L+ A H+ + ++ Sbjct: 7 LTATLVLVSIAMQDLRERRVSNRAVLAFAMLYLIAAALVREGLAPFAGHVATAAAMLVVF 66 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 +GGGDVKL + +W G P L L V G + +L + Sbjct: 67 GALRHAGWLGGGDVKLAAAVFLWAGP-PLALPVLTIVGASGAACGLAMLA------GLAR 119 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 P + +PYG+A++ GG ++ Sbjct: 120 QRRVAPAHPMATRGVPYGVALAFGGALA 147 >gi|171317757|ref|ZP_02906939.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5] gi|171097107|gb|EDT41960.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5] Length = 159 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 7/148 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L F LV A DL + NR + +L+ A L+ A H+ + ++ Sbjct: 7 LAATFVLVSIAAQDLRERRVSNRAVLAFAMLYLVAAALVREGLAPFAGHVATAAAMLVVF 66 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 +GGGDVKL + +W G T L L V G + +L + Sbjct: 67 GGLRHAGWLGGGDVKLAAAVFLWAGPT-LALPVLTIVGASGAACGLAMLA------AVAR 119 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 P + +PYG+A+++GG+++ Sbjct: 120 QRRIAPAHTMATRGVPYGVALALGGVLA 147 >gi|15602719|ref|NP_245791.1| hypothetical protein PM0854 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721163|gb|AAK02938.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 143 Score = 61.4 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 20/142 (14%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+ + +D+ S +I N++ ++L + A++ + + L L+ +I F F Sbjct: 15 ILLIILSWTDIKSRIISNKIVFLLLLVMVPLAWI-----QHKQIFFLPALLTLVIGFLLF 69 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 F +MG GD+KL++ + + + F F A G L I G Sbjct: 70 TFGVMGAGDIKLMSVLMLTIPHS-QIIYFFLFTAFSGLFL--------------IIIGFL 114 Query: 137 VPKSFLMKNKIPYGIAISMGGL 158 + + ++ +PYG+AIS G + Sbjct: 115 FFRHSIRQHGLPYGVAISCGFI 136 >gi|197103823|ref|YP_002129200.1| prepilin peptidase CpaA [Phenylobacterium zucineum HLK1] gi|196477243|gb|ACG76771.1| prepilin peptidase CpaA [Phenylobacterium zucineum HLK1] Length = 172 Score = 61.1 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 3/149 (2%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 ++ A+ D+ S IPN + + + G+F+ A G+ +A H +G+ ++ FA Sbjct: 17 VIAGAVKDVASFTIPNWIPLALAGAFVPAALAAGLPPAALAAHAGLGVGALVLGMVLFAV 76 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF--GMF 136 +GGGD KL+ + +W GW P+ +FL I GG LS+ +L +R + + + Sbjct: 77 RAIGGGDGKLMAAAVLWLGW-PALPTFLLVTVIAGGALSLGLLALRAPALRVLVLSGPAW 135 Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSY 165 + K +PYG+AI+ G L ++P S Sbjct: 136 FVRLAEPKEGVPYGLAIAAGALAAFPLSP 164 >gi|90412178|ref|ZP_01220184.1| Hypothetical membrane protein [Photobacterium profundum 3TCK] gi|90326902|gb|EAS43287.1| Hypothetical membrane protein [Photobacterium profundum 3TCK] Length = 145 Score = 61.1 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 14/146 (9%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 + P +++ D+ I N V + L+ AF +A ++ +I+ +I Sbjct: 5 LQLMPLLMLWVTYLDIRYRRISNIVCAAVFSLSLILAF----SQHQLADGIISSIIMLLI 60 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 F FNI+ GD KL ++ AV +S L+F ++ GG+++V L + Sbjct: 61 SLLLFYFNIVAAGDGKLASAFAVALSP-QQLISALYFTSLFGGVVAVIYLIKYQLIQR-- 117 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGG 157 S +PYG+AI+ G Sbjct: 118 -------SSPEKARGLPYGVAIACGF 136 >gi|163801679|ref|ZP_02195577.1| hypothetical protein 1103602000597_AND4_09502 [Vibrio sp. AND4] gi|159174596|gb|EDP59398.1| hypothetical protein AND4_09502 [Vibrio sp. AND4] Length = 145 Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 20/154 (12%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 S FL+ CL + ++ D I N ++L + + + + + Sbjct: 4 ESYFFLLFIVCL-YVSVVDFLHRKIHNLTLFILLVFQCFLSPID--------IQIASFFL 54 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + I ++ N +G GD+K ++ SF+ A GG L+V L + + Sbjct: 55 ILGIGLILYSQNWIGAGDIKYAAVLSLTIVPNDLLWSFVM-TAYAGGFLAVMYLLGQKLP 113 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 ++ + IPYGIAIS+G + Sbjct: 114 INVS----------NTQEGIPYGIAISIGFYLII 137 >gi|24114271|ref|NP_708781.1| hypothetical protein SF3007 [Shigella flexneri 2a str. 301] gi|24053425|gb|AAN44488.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|281602357|gb|ADA75341.1| putative tight adherance operon protein [Shigella flexneri 2002017] Length = 155 Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 20/156 (12%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 L L+F + D+ +I +R +V+ L + + +L+ V ++ Sbjct: 19 LLFVALFLIFISWGDILLRIISHRYLLVLTVLIFLA-----LILQHQKPNLVAAGSVLLV 73 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 F F+ I+GGGDVKLLT ++ +FL + G ++ + Sbjct: 74 GFFLFSAGIIGGGDVKLLTVLSLAID-EHELANFLVAMTFCGALVVLA------------ 120 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167 G+ + + +N +PY + IS+ L++YP LF Sbjct: 121 --GLLFFRKSIRENGVPYAVPISLAFLLTYPVFPLF 154 >gi|313648076|gb|EFS12522.1| type IV leader peptidase family protein [Shigella flexneri 2a str. 2457T] Length = 147 Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 20/156 (12%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 L L+F + D+ +I +R +V+ L + + +L+ V ++ Sbjct: 11 LLFVALFLIFISWGDILLRIISHRYLLVLTVLIFLA-----LILQHQKPNLVAAGSVLLV 65 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 F F+ I+GGGDVKLLT ++ +FL + G ++ + Sbjct: 66 GFFLFSAGIIGGGDVKLLTVLSLAID-EHELANFLVAMTFCGALVVLA------------ 112 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167 G+ + + +N +PY + IS+ L++YP LF Sbjct: 113 --GLLFFRKSIRENGVPYAVPISLAFLLTYPVFPLF 146 >gi|328474267|gb|EGF45072.1| hypothetical protein VP10329_16210 [Vibrio parahaemolyticus 10329] Length = 162 Score = 59.1 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ L+ +SD IPN+ +++L +TA +L + H GL+ F +C Sbjct: 5 LVIWSLLIAIGVSDAQKHRIPNKAVLLLLV--AVTANVLYSPSVSLLDHAYGGLVAFAVC 62 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F + M GGDVKLL W G + + + + GGI+ +F L + + + + + Sbjct: 63 FALYLVKAMAGGDVKLLAVIGTWLGLS-NLWEASIGIILAGGIVGIFYLMLHIASTSVAL 121 >gi|28899196|ref|NP_798801.1| hypothetical protein VP2422 [Vibrio parahaemolyticus RIMD 2210633] gi|260361566|ref|ZP_05774593.1| peptidase, A24 family [Vibrio parahaemolyticus K5030] gi|260876723|ref|ZP_05889078.1| peptidase, A24 family [Vibrio parahaemolyticus AN-5034] gi|260898198|ref|ZP_05906694.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio parahaemolyticus Peru-466] gi|260900394|ref|ZP_05908789.1| peptidase, A24 family [Vibrio parahaemolyticus AQ4037] gi|28807420|dbj|BAC60685.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308089056|gb|EFO38751.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio parahaemolyticus Peru-466] gi|308091369|gb|EFO41064.1| peptidase, A24 family [Vibrio parahaemolyticus AN-5034] gi|308109134|gb|EFO46674.1| peptidase, A24 family [Vibrio parahaemolyticus AQ4037] gi|308114018|gb|EFO51558.1| peptidase, A24 family [Vibrio parahaemolyticus K5030] Length = 162 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ L+ +SD IPN+ +++L +TA +L + H GL+ F +C Sbjct: 5 LVIWSLLIAIGVSDAQKHRIPNKAVLLLLV--AVTANVLYSPSVSLLDHAYGGLVAFAVC 62 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F + M GGDVKLL W G + + + + GGI+ +F L + + + + + Sbjct: 63 FALYLVKAMAGGDVKLLAVIGAWLGLS-NLWEASIGIILAGGIVGIFYLMLHIASTSVAL 121 >gi|153836819|ref|ZP_01989486.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio parahaemolyticus AQ3810] gi|149749965|gb|EDM60710.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio parahaemolyticus AQ3810] Length = 162 Score = 58.4 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ L+ +SD IPN+ +++L +TA +L + H GL+ F +C Sbjct: 5 LVIWSLLIAIGVSDAQKHRIPNKAVLLLLV--AVTANVLYSPSVSLLDHAYGGLVAFAVC 62 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F + M GGDVKLL W G + + + + GGI+ +F L + + + + + Sbjct: 63 FALYLVKAMAGGDVKLLAVIGAWLGMS-NLWEASIGIILAGGIVGIFYLMLHIASTSVAL 121 >gi|33152388|ref|NP_873741.1| flp operon protein B [Haemophilus ducreyi 35000HP] gi|21326705|gb|AAL92465.1| unknown [Haemophilus ducreyi] gi|33148611|gb|AAP96130.1| flp operon protein B [Haemophilus ducreyi 35000HP] Length = 144 Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 63/151 (41%), Gaps = 20/151 (13%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 +F L++ + +D+ S +I N+V + + + L ++ ++ + LI Sbjct: 8 VLFSFIVLLLIWLSYTDIRSRIITNKVVLALFCAILPFSWFT-----QGMVYPMPALICL 62 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 +I F F ++G GD KL+ + + F G++ + L R + Sbjct: 63 VIGFVLFMLGVIGAGDAKLMAVLMLAVPPEYTIFFLFFTTCAGLGLIIIGGLFFRQV--- 119 Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 ++K +PYG+AIS+G + + Sbjct: 120 ------------IVKKGLPYGVAISVGFIAT 138 >gi|297581606|ref|ZP_06943528.1| predicted protein [Vibrio cholerae RC385] gi|297534013|gb|EFH72852.1| predicted protein [Vibrio cholerae RC385] Length = 138 Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 16/151 (10%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ LV+ ALSDL +PN I+ A ++G L ++L+ ++V + Sbjct: 3 IVTVLLLVWVALSDLQQRKVPNIAVIL-------FAVVVGAVTPLSQGNVLISVVVLSLG 55 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F F + G GD KLL A +G + S +F A+ GG+LSV Sbjct: 56 MLAFHFRLFGAGDSKLLAVCA--YGAGDQWTSLIFITALFGGVLSVMCWIHNWGVQTGFS 113 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163 V +PY +AI + Sbjct: 114 SKPPV-------KTVPYAVAICGAAFATLHY 137 >gi|147677479|ref|YP_001211694.1| type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Pelotomaculum thermopropionicum SI] gi|146273576|dbj|BAF59325.1| type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Pelotomaculum thermopropionicum SI] Length = 250 Score = 57.6 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 A ++ L+ AA D +IP++++++ + + L A+L+ D L + Sbjct: 98 QGAAMVLFFALLITAAFIDFKHQIIPDKLAVLGIIAGLPLAWLVSADRLKSGLLGFLAAG 157 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 ++ + MGGGDVKL ++ GW P+ L LF + GG + +F+L + Sbjct: 158 AIMLAIALASRGGMGGGDVKLSAVMGLFLGW-PAVLVALFLAFLAGGAVGLFLLATGRKS 216 Query: 128 NHIPIF 133 + Sbjct: 217 RKDAVP 222 >gi|238755448|ref|ZP_04616788.1| Flp pilus assembly protein, protease CpaA [Yersinia ruckeri ATCC 29473] gi|238706289|gb|EEP98666.1| Flp pilus assembly protein, protease CpaA [Yersinia ruckeri ATCC 29473] Length = 104 Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 15/103 (14%) Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 ++ L+ LI+ I F F F ++GGGDVK++T A ++ F+ + AI+GG+ Sbjct: 15 SISLIFPLIILTIGFIIFIFGLIGGGDVKMITVLACTLTPMQTY-HFITYTAIMGGV--- 70 Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + I G+ + +S + + +PYG+AI+ G +S Sbjct: 71 -----------VMIIGLVISRSDIKERGVPYGVAIASGFSLSL 102 >gi|87312295|ref|ZP_01094393.1| type IV prepilin peptidase CpaA-like protein [Blastopirellula marina DSM 3645] gi|87284999|gb|EAQ76935.1| type IV prepilin peptidase CpaA-like protein [Blastopirellula marina DSM 3645] Length = 238 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 19/165 (11%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L+ AA+ D F +PN ++ + + T ++ +E + +L ++ + Sbjct: 69 VVTVTLIVAAVIDGFQLKVPNWITFPFIIA-GWTYSVIAFGWEGLGWSMLGTVVGLALLL 127 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 +A MG GDVKLL W T +F +F A++G +L++ ++ R Sbjct: 128 PAYAIGGMGAGDVKLLAGVGAWMYGTHTFYAFCI-SAVVGAVLAIGMVLFRGAWEKHSNQ 186 Query: 134 GMFVPKSFLMKNK-----------------IPYGIAISMGGLISY 161 + L +PYGI I++G + + Sbjct: 187 AWMILNEILTIRDPNQLSAIAAERKPTMMLLPYGIPIAIGSIAYF 231 >gi|148262015|ref|YP_001236142.1| peptidase A24A, prepilin type IV [Acidiphilium cryptum JF-5] gi|146403696|gb|ABQ32223.1| peptidase A24A, prepilin type IV [Acidiphilium cryptum JF-5] Length = 167 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L FA DL IP+ V M + + G ++ + L V ++F + F + Sbjct: 13 LAFACWQDLLLRRIPDGVPAAMALAGIFLRLRDG--FQPFGVSLAVAAVLFAVLFAVYLR 70 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 +GGGDVKL+ + A+ +G + FLF + GGIL++ L +R+ G Sbjct: 71 RSIGGGDVKLIVALALGYGPL-ALAGFLFATVLAGGILALAYLALRVAAPPPRPAGH 126 >gi|296133253|ref|YP_003640500.1| peptidase A24A domain protein [Thermincola sp. JR] gi|296031831|gb|ADG82599.1| peptidase A24A domain protein [Thermincola potens JR] Length = 250 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 16/153 (10%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 + V+L+ L+ + DL +IPN + I+ L L + + L Sbjct: 98 EAVVYLVLISLLIVISFIDLRLKIIPNGLIIIGLVVGLAINIIRPLTTFSGGLVGFFSAG 157 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + + MGGGD+KL +W GW +FL F + G + + ++ + Sbjct: 158 CLFLAIAVLSKGGMGGGDIKLAAMLGLWLGWQQAFLGFFL-AFLSGTAVGIGLMATGQKS 216 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 K+ IP+G IS+G L+S Sbjct: 217 R---------------KDAIPFGPFISLGALLS 234 >gi|326405524|ref|YP_004285606.1| putative peptidase A24A [Acidiphilium multivorum AIU301] gi|325052386|dbj|BAJ82724.1| putative peptidase A24A [Acidiphilium multivorum AIU301] Length = 167 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L FA DL IP+ V M + + G ++ + + L V ++F + F + Sbjct: 13 LAFACWQDLLLRRIPDGVPAAMALAGIFLRLRDG--FQPLGVSLAVAAVLFAVLFAVYLR 70 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 +GGGDVKL+ + A+ +G + FLF + GGIL++ L +R+ G Sbjct: 71 RSIGGGDVKLIVALALGYGPL-ALAGFLFATVLAGGILALAYLALRVAAPPPRPAGH 126 >gi|116621340|ref|YP_823496.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus Ellin6076] gi|116224502|gb|ABJ83211.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus Ellin6076] Length = 184 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 1/133 (0%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + ++ AA+ D+ IPN +++ + + + L + L + F + Sbjct: 13 LLLAVVLGAAIYDIRYRRIPNWLNMFGVLAGIAMNTFLYQGLPGLVFALKGLFLAFAVYV 72 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 +A + MG GDVKL+ + GW F F+ A++GGI+S+ ++ R Sbjct: 73 VLYALHAMGAGDVKLMAAVGAIVGWENWFGIFIV-TAVIGGIMSLILVASRGRVKKTLFN 131 Query: 134 GMFVPKSFLMKNK 146 F+ Sbjct: 132 VSFILSEMKSGRP 144 >gi|190149867|ref|YP_001968392.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914998|gb|ACE61250.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 142 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 20/156 (12%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 + S + I L+ +DL +I NRV + +L + ++L+ L L Sbjct: 3 LFISTLIAIMVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGTLSWLPA 57 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 ++ +I F F N +G GDVKLLT + +P + FLF A G +L Sbjct: 58 VLCLVIGFVLFLLNAIGAGDVKLLTVLMLAIP-SPLAIFFLFLTACSGLLL--------- 107 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 I G + + + +PYGIAIS G L + Sbjct: 108 -----IIIGWLFYRKTIREKGLPYGIAISTGFLTTL 138 >gi|307263191|ref|ZP_07544812.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871553|gb|EFN03276.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 131 Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 20/144 (13%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 L+ +DL +I NRV + +L + ++L+ L L ++ +I F F Sbjct: 4 LLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGTLSWLPAVLCLVIGFVLFL 58 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 N +G GDVKLLT + +P + FLF A G +L I G Sbjct: 59 LNAIGAGDVKLLTVLMLAIP-SPLAIFFLFLTACSGLLL--------------IIIGWLF 103 Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161 + + + +PYGIAIS G L + Sbjct: 104 YRKTIREKGLPYGIAISTGFLTTL 127 >gi|322434102|ref|YP_004216314.1| peptidase A24A prepilin type IV [Acidobacterium sp. MP5ACTX9] gi|321161829|gb|ADW67534.1| peptidase A24A prepilin type IV [Acidobacterium sp. MP5ACTX9] Length = 182 Score = 55.3 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 17/160 (10%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 C +L DL S IPNR++ L L + + L L GLI I FF Sbjct: 15 VCASIGSLHDLRSRRIPNRLTGP-AILCGLLLHLALGGWTQLGLSALAGLIAGGIFLVFF 73 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 MG GDVKL+T+ G T L ++G ++ V + R + + Sbjct: 74 VAGGMGAGDVKLMTAVGCLAG-TAYIKEVLIATVLIGALMGVALALYRGRLRETMLNVIT 132 Query: 137 VPKSFLMKN---------------KIPYGIAISMGGLISY 161 + + + ++PY + I+ G L+++ Sbjct: 133 LVQHHGAEGLAAHPELNVRNVATLRLPYALPIAAGCLLTF 172 >gi|307256576|ref|ZP_07538357.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864986|gb|EFM96888.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 131 Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 20/144 (13%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 L+ +DL +I NRV + +L + ++L+ L L ++ +I F F Sbjct: 4 LLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGTLSWLPAVLCLVIGFVLFL 58 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 N++G GDVKLL + SF F F+ G+L + I G Sbjct: 59 LNVIGAGDVKLLAVLMLAVP--SSFAIFFLFLTACSGLLIIII-------------GWLF 103 Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161 + + + +PYGIAIS G L + Sbjct: 104 YRQTIREKGLPYGIAISTGFLTTL 127 >gi|86147470|ref|ZP_01065782.1| hypothetical protein MED222_21489 [Vibrio sp. MED222] gi|85834763|gb|EAQ52909.1| hypothetical protein MED222_21489 [Vibrio sp. MED222] Length = 176 Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 59/135 (43%), Gaps = 1/135 (0%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ L+ ++ D+ + IPN+V I+ + + + G ++ + + L+ + +F Sbjct: 6 LVFWVLLIIVSVFDVKESRIPNKVLILFVLLYFILLINGGFSWDSLVISLMGAITLFFSG 65 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 + M GDVK L ++ GW + L +++ I GI++ F L + Sbjct: 66 LFLYLLKAMSAGDVKFLGVIGLYVGWG-NLLDTSYYILISSGIIATFYLLYNNANSESLT 124 Query: 133 FGMFVPKSFLMKNKI 147 + + ++ + + Sbjct: 125 VRNYFEEKLMLVSGM 139 >gi|126208039|ref|YP_001053264.1| flp operon protein B [Actinobacillus pleuropneumoniae L20] gi|126096831|gb|ABN73659.1| flp operon protein B [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 142 Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 20/156 (12%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 + S + I L+ +DL +I NRV + +L + ++L+ L L Sbjct: 3 LFISTLIAIMVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGTLSWLPA 57 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 ++ +I F F N++G GDVKLL + SF F F+ G+L + I Sbjct: 58 VLCLVIGFVLFLLNVIGAGDVKLLAVLMLAVP--SSFAIFFLFLTACSGLLIIII----- 110 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 G + + + +PYGIAIS G L + Sbjct: 111 --------GWLFYRQTIREKGLPYGIAISTGFLTTL 138 >gi|32452621|gb|AAP43983.1| TadV [Aggregatibacter actinomycetemcomitans] gi|109727127|gb|ABG45871.1| TadV [Aggregatibacter actinomycetemcomitans] Length = 142 Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 20/152 (13%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 +A+ +I L+ +++D+ S +I NR+ + +L + + + L + + ++ L Sbjct: 5 INALVIITLSLLITLSITDIRSRLISNRIVLFLLFAIIPFSLL-----KYQTIFVMPALC 59 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 II F F+ +G GD+KL + + F F F G++ + L R Sbjct: 60 TLIIGFLLFSLRFIGAGDIKLASVLMLAIPSGEVFSFFFFTTFAGLGLIIIGWLFFRK-- 117 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 + +N +PYG+AIS+G +I Sbjct: 118 -------------SIKENGLPYGVAISLGFMI 136 >gi|307245414|ref|ZP_07527502.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254369|ref|ZP_07536207.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306853755|gb|EFM85972.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862668|gb|EFM94624.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] Length = 142 Score = 54.9 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 20/156 (12%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 + S + + L+ +DL +I NRV + +L + ++L+ ++ Sbjct: 3 LFISTLIAVMVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGSISWFPA 57 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 ++ +I F F N++G GDVKLL + +P + FLF A G +L Sbjct: 58 ILCLVIGFVLFLLNVIGAGDVKLLAVLMLAVP-SPFAVFFLFLTACAGLLL--------- 107 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 I G + + + +PYGIAIS G L + Sbjct: 108 -----IIIGWLFYRKAIREKGLPYGIAISAGFLTTL 138 >gi|307261007|ref|ZP_07542689.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869309|gb|EFN01104.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 131 Score = 54.9 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 20/144 (13%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 L+ +DL +I NRV + +L + ++L+ L L ++ +I F F Sbjct: 4 LLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGTLSWLPAVLCLVIGFVLFL 58 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 N++G GDVKLL + SF F F+ G+L + I G Sbjct: 59 LNVIGAGDVKLLAVLMLAVP--SSFAIFFLFLTACSGLLIIII-------------GWLF 103 Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161 + + + +PYGIAISMG L + Sbjct: 104 YRQTIREKGLPYGIAISMGFLTTL 127 >gi|296122070|ref|YP_003629848.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776] gi|296014410|gb|ADG67649.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776] Length = 218 Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 8/128 (6%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIA 59 M MVF A L+ AA +DL I N +++ ++ G+ +A Sbjct: 4 MNPQTMVFLAGVLV---LTTTAAYTDLRYFRIYNWLTLPAFALGWIYQVAFYGLP--GLA 58 Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV--AILGGILS 117 L I F + F FA GGGD KL+ + +VW GW + + + + +G ++ Sbjct: 59 DAGLGFAIGFGLFFLLFAIGASGGGDTKLMGALSVWLGWKLTLYTVVLTILFVAIGSVVM 118 Query: 118 VFILTVRM 125 + +R Sbjct: 119 LIWSVLRR 126 >gi|312882142|ref|ZP_07741891.1| prepilin peptidase CpaA [Vibrio caribbenthicus ATCC BAA-2122] gi|309370188|gb|EFP97691.1| prepilin peptidase CpaA [Vibrio caribbenthicus ATCC BAA-2122] Length = 145 Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 19/155 (12%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M FL+ F + SD F I N +++L + + L ++ Sbjct: 1 MSLEVYFLVLAFICLCICFSDYFYRKIHNSALLILLIFQVFFSPLD--------IYFTSF 52 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +V I +A +G D+K + ++ + +++ + GG L+VF R Sbjct: 53 ALVLGIGLILYALIYIGASDIKYASVMSLTVAFDDILWAYI-TTSFAGGFLAVFYFLSRK 111 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + K + IP+GIAIS+G + Sbjct: 112 ----------LLSKKRFNQEGIPFGIAISIGFYLI 136 >gi|260914314|ref|ZP_05920783.1| flp operon protein B [Pasteurella dagmatis ATCC 43325] gi|260631415|gb|EEX49597.1| flp operon protein B [Pasteurella dagmatis ATCC 43325] Length = 143 Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 20/132 (15%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82 + +D+ +I N++ +++L L +++ + + ++ LI FII F F +G Sbjct: 21 SYTDIKHRIISNKIVLILLLVILPLSWI-----KYGEIFVVPALISFIIGFILFNLKTVG 75 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142 GDVKL++ + +SF FF A + I G + + Sbjct: 76 AGDVKLVSVLMLAIP-QEQIMSFFFFTA--------------CSGLILIIIGWIFFRESI 120 Query: 143 MKNKIPYGIAIS 154 +KN +PYG+AIS Sbjct: 121 LKNHLPYGVAIS 132 >gi|225872752|ref|YP_002754209.1| type IV prepilin leader peptidase family protein [Acidobacterium capsulatum ATCC 51196] gi|225791712|gb|ACO31802.1| type IV prepilin leader peptidase family protein [Acidobacterium capsulatum ATCC 51196] Length = 191 Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 17/158 (10%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 + D + IPN+++ L + LL F + + + L L+ F++ FF MG Sbjct: 34 VHDARTRRIPNKLTGPALLAGLLLHFAFD-GWRGMGMAALAALLAFVVFLVFFLAGGMGA 92 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GDVKL+T+ A + L AI GG++++ + R + Sbjct: 93 GDVKLMTAVAC-VAGNHFVIELLVTTAIAGGVMALGLALARGRFKQTLGNVAMLMSHHRH 151 Query: 144 KN---------------KIPYGIAISMGGLISYPDSYL 166 ++PYG+AI+ G + + +Y+ Sbjct: 152 AGLQPHPELNVRNQQSLRLPYGLAIAAGCIFTLASTYV 189 >gi|320158380|ref|YP_004190758.1| type IV prepilin peptidase TadV/CpaA [Vibrio vulnificus MO6-24/O] gi|319933692|gb|ADV88555.1| type IV prepilin peptidase TadV/CpaA [Vibrio vulnificus MO6-24/O] Length = 146 Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 17/146 (11%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 A+ LI F ++A+ +D S +I N + + AFL G LL+ + F Sbjct: 4 AITLIF-FTALYASFTDAKSRVISNHTVVFAFLCCFIFAFLNGYLLH----SLLIATLCF 58 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 F + GGGD K V + + ++ + GGI + + Sbjct: 59 AFSFILWLLGFWGGGDAKYFPVMMVGVKPD-YAIEAICYIGLFGGITVIGVYVY------ 111 Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISM 155 + K + K IPYGI IS Sbjct: 112 -----CLIAKKEIKKIGIPYGIPISA 132 >gi|26000710|gb|AAN75206.1| TadV [Aggregatibacter actinomycetemcomitans] Length = 142 Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 20/153 (13%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 V +A+ +I L+ +++D+ S +I NRV + +L + + L + + ++ L Sbjct: 4 VINALVIITLLLLITLSVTDIRSRLISNRVVLFLLFVIVPFSLL-----KYQTIFVIPAL 58 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 II F F+ + +G GDVKL++ + F F F G++ + L R Sbjct: 59 CTLIIGFLLFSLHFIGAGDVKLVSVLMLAVPSDEIFSFFFFTTFAGLGLIIIGWLFFRK- 117 Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 + +N +PYG+AIS+G +I Sbjct: 118 --------------SIKENGLPYGVAISLGFMI 136 >gi|171920999|gb|ACB59182.1| TadV [Actinobacillus suis ATCC 33415] Length = 143 Score = 54.1 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 20/138 (14%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 +DL +I NR+ + +L + ++L+ L L L+ I F F FNI+G Sbjct: 21 WTDLRYRLISNRIIMALLLVTIPFSYLV-----HGTLFWLPALLCLAIGFILFMFNIIGA 75 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GDVKLL + + + FLF A G +L I G + + Sbjct: 76 GDVKLLAVLMLAIP-SHFAVFFLFLTACAGLLL--------------IIIGWLFYRQSIR 120 Query: 144 KNKIPYGIAISMGGLISY 161 + +PYGIAIS+G L + Sbjct: 121 EKGLPYGIAISVGFLTTL 138 >gi|307133494|dbj|BAJ19006.1| TadV [Aggregatibacter actinomycetemcomitans] gi|307548785|dbj|BAJ19107.1| TadV [Aggregatibacter actinomycetemcomitans] gi|307548800|dbj|BAJ19121.1| TadV [Aggregatibacter actinomycetemcomitans] Length = 142 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 20/134 (14%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85 D+ S +I NRV + +L + + L + + ++ L II F F+ + +G GD Sbjct: 23 DIRSRLISNRVVLFLLFVIVPFSLL-----KYQTIFVIPALCTLIIGFLLFSLHFIGAGD 77 Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145 VKL++ + F F F G++ + L R + +N Sbjct: 78 VKLVSVLMLAVPSDEIFSFFFFTTFAGLGLIIIGWLFFRK---------------SIKEN 122 Query: 146 KIPYGIAISMGGLI 159 +PYG+AIS+G +I Sbjct: 123 GLPYGVAISLGFMI 136 >gi|172087796|ref|YP_001816738.1| hypothetical protein VF_A1179 [Vibrio fischeri ES114] gi|171902380|gb|ACB55706.1| hypothetical protein VF_A1179 [Vibrio fischeri ES114] Length = 144 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 18/136 (13%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82 D+ I NR+ +++L + G L +I+F+ F F ++ Sbjct: 20 CYQDITRRTISNRMCLIVLIICIFLVIKNG-----NYSSLYYSVIIFLGGFILFIKKVIA 74 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142 GDVKL++S + L+F + + GG++S+ +L ++I Sbjct: 75 AGDVKLISSFFIAINQNYQLLTFTIIL-LAGGVISIVLLIHKIINKEN------------ 121 Query: 143 MKNKIPYGIAISMGGL 158 +PYG+ I +G L Sbjct: 122 TTMTVPYGVPICIGCL 137 >gi|283787706|ref|YP_003367571.1| prepilin peptidase TadV [Citrobacter rodentium ICC168] gi|282951160|emb|CBG90851.1| putative prepilin peptidase TadV [Citrobacter rodentium ICC168] Length = 132 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 20/143 (13%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 L+ +DLF I N+ +++L L++ + + ++ ++ ++ F + Sbjct: 1 MLLRVCYTDLFYRKIKNKTVVLILIVSLVSGII-----QYGIPSIIFPCVILLVGFLLSS 55 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 F+++G GDVKLL + + + L F+ A+ G ++ + ++ + ++ Sbjct: 56 FSLVGAGDVKLLVALSFSL-SSEDILRFITTTALCGLLVVIPVIYICIVKR--------- 105 Query: 138 PKSFLMKNKIPYGIAISMGGLIS 160 K +PYGIAISMG I Sbjct: 106 -----KKTTVPYGIAISMGYFIV 123 >gi|296121062|ref|YP_003628840.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776] gi|296013402|gb|ADG66641.1| peptidase A24A prepilin type IV [Planctomyces limnophilus DSM 3776] Length = 183 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 19/168 (11%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+ AA D +PN ++ M+ S L+ F++G + + L+ ++ + Sbjct: 18 LVLILAAWIDGKELRVPNWITFPMVLSGLIYGFVMG-GWAGLGDSLIGMVVGLACLLPLY 76 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 A MG GDVKL+ W G ++ +F+ V ++G I+++ + R + M Sbjct: 77 AVGGMGAGDVKLMAGMGAWLGAAITWQAFMVSV-VVGAIMAIIMACYRKDLHKHVGQAML 135 Query: 137 VPKSFLMKNK-----------------IPYGIAISMGGLISYPDSYLF 167 + + +PYGI I +G + + + L Sbjct: 136 IWTEWTTIRDPRKLSEIAAERKPRMLLLPYGIPICIGSIAYFVYAGLI 183 >gi|261867457|ref|YP_003255379.1| TadV [Aggregatibacter actinomycetemcomitans D11S-1] gi|8096200|dbj|BAA25888.2| unnamed protein product [Actinobacillus actinomycetemcomitans] gi|109727129|gb|ABG45872.1| TadV [Aggregatibacter actinomycetemcomitans] gi|261412789|gb|ACX82160.1| TadV [Aggregatibacter actinomycetemcomitans D11S-1] Length = 142 Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 20/135 (14%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +D+ S +I NRV + +L + + L + + ++ L II F F+ +G G Sbjct: 22 TDIRSRLISNRVVLFLLLVIIPFSLL-----KYQTIFVIPALCTLIIGFLLFSLRFIGAG 76 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 D+KL + + F F F G++ + L R + + Sbjct: 77 DIKLASVLMLAVPSDEVFSFFFFTTFAGLGLIIIGWLFFRK---------------SIKE 121 Query: 145 NKIPYGIAISMGGLI 159 N +PYG+AIS+G +I Sbjct: 122 NGLPYGVAISLGFMI 136 >gi|258405294|ref|YP_003198036.1| peptidase A24A prepilin type IV [Desulfohalobium retbaense DSM 5692] gi|257797521|gb|ACV68458.1| peptidase A24A prepilin type IV [Desulfohalobium retbaense DSM 5692] Length = 189 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 19/163 (11%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ P L+FAAL DL IPN ++ + F L +A + L+ + Sbjct: 12 LLLFPA-LIFAALYDLRYQKIPNLLNFPLAL-FALIYHTAFTGLNGLAFGVTGMLLGTAL 69 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 + F MG GD KL+ + G F+S LF AI GG+ +V +L V Sbjct: 70 FLPPYIFGGMGAGDTKLMGAIGAVLGAKGVFVSALF-TAIFGGLYAVLLLLVHRGYARTL 128 Query: 132 IFGMF--VPKSFLMKNKIP--------------YGIAISMGGL 158 + + + L++ IP YGIAI++G L Sbjct: 129 MQRTWEGLKTLVLVRRYIPDSSPQSTNTSPRLCYGIAIALGTL 171 >gi|148974888|ref|ZP_01811868.1| hypothetical protein VSWAT3_25224 [Vibrionales bacterium SWAT-3] gi|145965397|gb|EDK30646.1| hypothetical protein VSWAT3_25224 [Vibrionales bacterium SWAT-3] Length = 152 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 16/138 (11%) Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81 D IPN ++ + L L+ A G +A L + ++ F+I + ++ Sbjct: 22 VCFFDWKHRKIPNNLNKIALVVNLVVALSNGY----LASSLPISIVCFVIGVLLWYLKVI 77 Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141 G GDVKLLT+ + ++ L + +GG L + + + + + Sbjct: 78 GAGDVKLLTALVIGIQPD-LVIATLISIGFMGGGLVLIMYIIGK-----------IKRFN 125 Query: 142 LMKNKIPYGIAISMGGLI 159 K IPYGI I++ I Sbjct: 126 SYKKGIPYGIPIALSCFI 143 >gi|269962014|ref|ZP_06176369.1| hypothetical protein VME_27530 [Vibrio harveyi 1DA3] gi|269833337|gb|EEZ87441.1| hypothetical protein VME_27530 [Vibrio harveyi 1DA3] Length = 161 Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 3/113 (2%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 LV +SD IPN+ +++L + L HL GL+ F +CF + Sbjct: 9 LLVAIGVSDAQKHKIPNKAVLLLLVVVAASVVLG--PNSNGLDHLYGGLVAFAVCFVLYL 66 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 +M GGDVKLL W G + + + + + GG++S+F L + + ++ I Sbjct: 67 CKVMAGGDVKLLAVLGAWIGLS-NLGAASTGIVLAGGVVSLFYLALHIGSSTI 118 >gi|241662167|ref|YP_002980527.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12D] gi|240864194|gb|ACS61855.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12D] Length = 179 Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 17/168 (10%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 S L ++ AA D+ + IPN + + L S L+ + L + Sbjct: 8 SLANLALILLVLTAAAYDVRTRRIPNWLVGMGLVSALVAQGMAIGVGAGCLAWLGGAAVG 67 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 +CF FF MG GDVKL+ + + G +F + GG+L++ ++ +R Sbjct: 68 IGLCFGFFVLGGMGAGDVKLMGAIGAFMGPFGAF-HVALVSFLAGGVLALVMVLLRREAR 126 Query: 129 HIPIFGMFVPKSFLMKNK----------------IPYGIAISMGGLIS 160 + S +K +PY +A + G L+ Sbjct: 127 RSAAGVSALLLSIPFGSKTVHAEGQGPKHGGTIQLPYAVAFAAGTLLV 174 >gi|221066741|ref|ZP_03542846.1| peptidase A24A prepilin type IV [Comamonas testosteroni KF-1] gi|220711764|gb|EED67132.1| peptidase A24A prepilin type IV [Comamonas testosteroni KF-1] Length = 189 Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 1/104 (0%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL-IVFIICFCFFAFNIMGGG 84 DL + N + ++ L + L F +++ + LVG+ + F+ F+A MG G Sbjct: 19 DLRIRKVRNWMVLLGLIAGLAVLFSSKQPFQVSVWNGLVGMCLAFVALMPFYALRWMGAG 78 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 DVK +WFG++ L ++L G+ + +L + Sbjct: 79 DVKFAAVIGLWFGFSHHLLVIWLGGSLLAGLHGLLVLAWHSVWR 122 >gi|170724968|ref|YP_001758994.1| peptidase A24A prepilin type IV [Shewanella woodyi ATCC 51908] gi|169810315|gb|ACA84899.1| peptidase A24A prepilin type IV [Shewanella woodyi ATCC 51908] Length = 164 Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 14/133 (10%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +D+ I N L + A + E L G ++F + F F + G Sbjct: 17 TDICKRRISNIGCFATLIICVWLAASQQLLIEGF----LTGSLIFALSLVLFRFRWLAAG 72 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 D KL ++ AV + ++ L I GG+L+V L + IP Sbjct: 73 DGKLASALAVALPLSQLPVA-LMLTLICGGVLAVIYLIKYRVIQKIPRGEDL-------- 123 Query: 145 NKIPYGIAISMGG 157 +PYGIAIS+G Sbjct: 124 -GLPYGIAISLGF 135 >gi|17545376|ref|NP_518778.1| prepilin peptidase transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427668|emb|CAD14187.1| probable prepilin peptidase transmembrane protein [Ralstonia solanacearum GMI1000] Length = 172 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 59/163 (36%), Gaps = 12/163 (7%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 + L +V AA+ D+ + IPNR+ L + L+ + L Sbjct: 6 ALANLSLLVLVVTAAVHDVRTRRIPNRLVAAGLAAALIAQCAMLGPVAGALAWLGGAAAG 65 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 +C + MG GDVKL+ + + G + L + GG+L+V ++ + N Sbjct: 66 MGLCIGLYLLRGMGAGDVKLMGAIGAFTGPL-AALHVGLASCVAGGVLAVAMVALDARKN 124 Query: 129 HIPIFGMFVPKSFLMKNK-----------IPYGIAISMGGLIS 160 P + +PY +A + G L+ Sbjct: 125 MGMALLFSAPVADRQTQPKESVRRGNAIRLPYAVAFAAGTLLV 167 >gi|156975626|ref|YP_001446533.1| prepilin peptidase CpaA [Vibrio harveyi ATCC BAA-1116] gi|156527220|gb|ABU72306.1| hypothetical protein VIBHAR_03359 [Vibrio harveyi ATCC BAA-1116] Length = 147 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 13/151 (8%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 V++ +LSD+ I N +V+ + A +G+ ++ ++G+ Sbjct: 4 VYITLAIVCFVVSLSDIRERTIKNSHVLVIA----VLAIAIGIADFSLSSLWVIGICWSA 59 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + F ++GGGDVKL+ + ++ T S L L FV I GGIL+V L + ++ Sbjct: 60 LLF-LHVLGVLGGGDVKLIAAFSLSLP-TQSLLEALIFVGIYGGILAVIYLILLRPSHVT 117 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + + + +PYG+AI G + Sbjct: 118 -------GEGDIPQIGLPYGVAICCGFYTAL 141 >gi|46143343|ref|ZP_00135452.2| COG4960: Flp pilus assembly protein, protease CpaA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 131 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 20/144 (13%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 L+ +DL +I NRV + +L + ++L+ L L ++ +I F F Sbjct: 4 LLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGTLSWLPAVLWLVIGFVLFL 58 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 N++G GDVKLL + SF F F+ G+L + I G Sbjct: 59 LNVIGAGDVKLLAVLMLAVP--SSFAIFFLFLTACTGLLIIII-------------GWLF 103 Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161 + + + +PYGIAIS G L + Sbjct: 104 YRQTIREKGLPYGIAISTGFLTTL 127 >gi|309780762|ref|ZP_07675503.1| peptidase A24A, prepilin type IV [Ralstonia sp. 5_7_47FAA] gi|308920444|gb|EFP66100.1| peptidase A24A, prepilin type IV [Ralstonia sp. 5_7_47FAA] Length = 179 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 17/168 (10%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 S L ++ AA D+ + IPN + + L S L+ + L + Sbjct: 8 SLANLALILLVLTAAAYDVRTRRIPNWLVGMGLVSALVAQGMAIGVGAGCLAWLGGAAVG 67 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 +CF FF MG GDVKL+ + + G +F + GG+L++ ++ +R Sbjct: 68 IGLCFGFFVLGGMGAGDVKLMGAIGAFMGPFGAF-HVALVSFLAGGVLALVMVLLRREAR 126 Query: 129 HIPIFGMFVPKSFLMKNK----------------IPYGIAISMGGLIS 160 + S +K +PY +A + G L+ Sbjct: 127 RSAAGVSALLLSIPFGSKAVHAEGQGPKHGGTIQLPYAVAFAAGTLLV 174 >gi|323493937|ref|ZP_08099054.1| hypothetical protein VIBR0546_01886 [Vibrio brasiliensis LMG 20546] gi|323311878|gb|EGA65025.1| hypothetical protein VIBR0546_01886 [Vibrio brasiliensis LMG 20546] Length = 152 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 16/157 (10%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M ++ + +I C + +SD I NR+ +++ + + AF G + Sbjct: 1 MNLDNIIAVTIVIINIACAFHSCISDHQHRTISNRICKLLIITNTIAAFYYGYGIQ---- 56 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 + + ++F I + G GD+KLL + +V L+ L V ++GG+ V + Sbjct: 57 SVTITSVIFFILIIIWLIGAFGAGDIKLLCAFSVGIKP-ELTLACLVLVGLIGGLQLVVM 115 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157 + ++T K+ + + IPYGI IS+ G Sbjct: 116 FLIGLMT-----------KTNIFEKGIPYGIPISISG 141 >gi|299069501|emb|CBJ40770.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia solanacearum CMR15] Length = 185 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 12/145 (8%) Query: 25 SDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHL-LVGLIVFIICFCFFAFNIMG 82 SDL S +PN + V ++ S +L F M + L G I +A MG Sbjct: 25 SDLRSRRVPNWLVAVGLVLSIVLVKFGSVMALAYDWRDVWLGGAIALASFLPLYALGWMG 84 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP---- 138 GDVK + GW ++ ++L G+ ++ IL +R P M + Sbjct: 85 AGDVKFFAVAGLLAGW-HGLVAIWLVSSVLAGVHALAILLLRRADASAPSGWMLMRVCPA 143 Query: 139 -----KSFLMKNKIPYGIAISMGGL 158 + IPY +++G L Sbjct: 144 LARWDAEQAGRRGIPYAAYMAIGLL 168 >gi|332765440|gb|EGJ95658.1| putative membrane protein [Shigella flexneri 2930-71] Length = 110 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 15/124 (12%) Query: 44 FLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL 103 L L + + +L+ V ++ F F+ I+GGGDVKLLT ++ Sbjct: 1 MLTVLIFLALILQHQKPNLVAAGSVLLVGFFLFSAGIIGGGDVKLLTVLSLAID-EHELA 59 Query: 104 SFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPD 163 +FL + G ++ + G+ + + +N +PY + IS+ L++YP Sbjct: 60 NFLVAMTFCGALVVLA--------------GLLFFRKSIRENGVPYAVPISLAFLLTYPV 105 Query: 164 SYLF 167 LF Sbjct: 106 FPLF 109 >gi|163738362|ref|ZP_02145777.1| hypothetical protein RGBS107_10076 [Phaeobacter gallaeciensis BS107] gi|161388283|gb|EDQ12637.1| hypothetical protein RGBS107_10076 [Phaeobacter gallaeciensis BS107] Length = 188 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 8/148 (5%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + P C V AL+DL IPN ++ F++ L M + LL I + F Sbjct: 35 VVPLCCV-VALNDLRHMRIPNWTVDLLGAIFVIVGPFL-MSWTDYGWQLLHLPIGIGLGF 92 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 ++ ++G GD K + A + + V I +L LT R+ Sbjct: 93 LCYSAGMVGAGDAKFAGAAAPFVVFG----DLSVVVIIFSAMLLAGFLTHRIAKYTPLRR 148 Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISY 161 KS+ + +K P G + +GG + + Sbjct: 149 LAPHWKSWDVGSKFPMG--LCLGGTLVF 174 >gi|254255252|ref|ZP_04948568.1| Type II secretory pathway prepilin signal peptidase PulO [Burkholderia dolosa AUO158] gi|124900989|gb|EAY71739.1| Type II secretory pathway prepilin signal peptidase PulO [Burkholderia dolosa AUO158] Length = 200 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 14/160 (8%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L + AA +D+ S IPNRV V L L+ L L + Sbjct: 33 LCVTLLAIVAASTDIASRRIPNRVVAVGLVGALIAQCALHGIAAGALQWLAGAATGLALL 92 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG-GILSVFILTVRMITNHIP 131 F+ M GDVKL+ + W G +F L + G G + + +L R+ + Sbjct: 93 LPFYLLRGMAAGDVKLMLAIGAWVGAEMTFYIALATFVLGGIGAIVLALLRGRVRDLCVN 152 Query: 132 IFGMFVPKSFLM-------------KNKIPYGIAISMGGL 158 + M +SF + +PYG+AI+ G L Sbjct: 153 VCRMVARRSFALHGESADGSAPVASAGALPYGVAIAAGTL 192 >gi|309778772|ref|ZP_07673545.1| prepilin peptidase transmembrane protein [Ralstonia sp. 5_7_47FAA] gi|308922480|gb|EFP68104.1| prepilin peptidase transmembrane protein [Ralstonia sp. 5_7_47FAA] Length = 185 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 12/153 (7%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLVGLIVFIICFC 74 V A D+ S +PN + + + + G+ L G I F Sbjct: 17 VLAVLAIALDIRSRRVPNWLVVAGVMLSIALIKFGGVQDLAYDWQDFWLGGAIAFACFLP 76 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 +A MG GDVK T + GW ++ +++ G+ ++ I+ +R + P Sbjct: 77 LYALGWMGAGDVKFFTVVGLLAGW-HGLVAVWLVSSMISGLHALGIMMLRQLDASSPSAW 135 Query: 135 M---------FVPKSFLMKNKIPYGIAISMGGL 158 + + + IPY +++G L Sbjct: 136 IVMRVCPAVARWDTAQAGRRGIPYAAYMAIGLL 168 >gi|300704928|ref|YP_003746531.1| prepilin peptidase transmembrane protein [Ralstonia solanacearum CFBP2957] gi|299072592|emb|CBJ43942.1| putative prepilin peptidase transmembrane protein [Ralstonia solanacearum CFBP2957] Length = 176 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 16/166 (9%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 L + AA SD+ + IPN + L + L+ L L + Sbjct: 7 LANLSLIVLIAIAAASDVRARRIPNWLVGSGLVAALIGQCLAQGLAAGGMAWLGGTAVGM 66 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 +C +A MG GDVKL+ + + G +F F + GG+L++ ++ +R Sbjct: 67 GMCIGIYALGGMGAGDVKLMGAIGAFMGPFGAF-HVAFVSFLAGGVLALVMVLLRREGQR 125 Query: 130 -----------IPIFGMFVPKSFLMKNK----IPYGIAISMGGLIS 160 +P G +P K +PY +A + G L+ Sbjct: 126 SLAGVSTLLLSLPFGGKAMPSQHGEKRSSTIQLPYAVAFAAGTLLV 171 >gi|299067805|emb|CBJ39016.1| putative prepilin peptidase transmembrane protein (cpaA) [Ralstonia solanacearum CMR15] Length = 172 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 12/163 (7%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 + L +V AA+ D+ + IPNR+ L + L+ + L + Sbjct: 6 ALANLSLLVLVVTAAVHDVRTRRIPNRLVAAGLAAALIAQCAVLGPVAGALAWLGGAAVG 65 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 +C + + MG GDVKL+ + + G + L + GG+L+V ++ + N Sbjct: 66 MGLCIGLYLLHGMGAGDVKLMGAIGAFTGPL-AALHVGLASCVAGGVLAVAMVALDARKN 124 Query: 129 HIPIFGMFVPKSFLMKNK-----------IPYGIAISMGGLIS 160 P + +PY +A + G L+ Sbjct: 125 MGMALLFSAPVADRQTQPKDSVPRGNAIRLPYAVAFAAGTLLV 167 >gi|59711118|ref|YP_203894.1| hypothetical protein VF_0511 [Vibrio fischeri ES114] gi|59479219|gb|AAW85006.1| hypothetical protein VF_0511 [Vibrio fischeri ES114] Length = 145 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 18/140 (12%) Query: 20 VFAALSDLFSAMIPNRVS-IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 ++A D+ + I N + I+M+ F GM Y LL LI+ + F F F Sbjct: 16 IYAVFHDIKNRKISNNIVFIIMIIGFFSIFVKGGMSY------LLSPLIILFVGFILFKF 69 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 NI+ GD+K + ++ L + + + + Sbjct: 70 NIIAAGDIKYYAAMSLMIEQQYLLL-----------VTCIILCLGGLQAYCQYSIYKLTG 118 Query: 139 KSFLMKNKIPYGIAISMGGL 158 ++ +PYG+AIS+G L Sbjct: 119 NERWIERGVPYGVAISIGSL 138 >gi|220918101|ref|YP_002493405.1| peptidase A24A prepilin type IV [Anaeromyxobacter dehalogenans 2CP-1] gi|219955955|gb|ACL66339.1| peptidase A24A prepilin type IV [Anaeromyxobacter dehalogenans 2CP-1] Length = 151 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 13/150 (8%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 + AA SDL S IPN +S+ + + A L+ I + + Sbjct: 1 MAVAAASDLASRRIPNALSLTVA----VAGLAASTGPLQAASGLVASAICLALMLPLWRR 56 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 +GGGDVKLL + A W F+ F VA+ GG+L++ +L + V Sbjct: 57 RAIGGGDVKLLAAAAAWVRLEHLFV-FGLAVALCGGLLALIVLARASAAELRLVRANAVA 115 Query: 139 KSFLMK--------NKIPYGIAISMGGLIS 160 + + IPYG+AI++G I+ Sbjct: 116 SLAMSRPAVARSAGTSIPYGVAIALGAAIA 145 >gi|329890998|ref|ZP_08269341.1| peptidase A24A prepilin type IV [Brevundimonas diminuta ATCC 11568] gi|328846299|gb|EGF95863.1| peptidase A24A prepilin type IV [Brevundimonas diminuta ATCC 11568] Length = 73 Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 104 SFLFFVAILGGILSVFILTVRMITNHIPIFG-MFVPKSFLMKNKIPYGIAISMGGLISYP 162 F+ + A+ GG + ++T R G +V + K IPYG+AI++G L++YP Sbjct: 3 PFILYTALAGGGFCLLLMTARSHLPFFAQTGPGWVMRLMQPKGDIPYGVAIAIGALLAYP 62 Query: 163 DSYLFKVALMG 173 S L + G Sbjct: 63 SSPLMTAYITG 73 >gi|144898051|emb|CAM74915.1| membrane protein [Magnetospirillum gryphiswaldense MSR-1] Length = 155 Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 17/145 (11%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + LV A++SD+ + I +R S+ ++ +F+L G + +A H+ + VF Sbjct: 15 LLVAALVDASISDVRALRIADRDSVAVVAAFILLG-ANGWPVQELAWHVAAAVAVFAAGA 73 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 FA + GGGDVKL + A+ G+ FLF +A++GGI+++ +L +R Sbjct: 74 ALFALGVWGGGDVKLCAALALLTGFV-GLPRFLFVMAMVGGIVALAVLALRGRA------ 126 Query: 134 GMFVPKSFLMKNKIPYGIAISMGGL 158 ++PYG+AI+ G+ Sbjct: 127 ---------AGGQVPYGLAIAAAGM 142 >gi|332754220|gb|EGJ84586.1| type IV leader peptidase family protein [Shigella flexneri 2747-71] gi|333014754|gb|EGK34099.1| type IV leader peptidase family protein [Shigella flexneri K-304] Length = 154 Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 6/112 (5%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 L L+F + D+ +I +R +V+ L + + +L+ V ++ Sbjct: 11 LLFVALFLIFISWGDILLRIISHRYLLVLTVLIFLA-----LILQHQKPNLVAAGSVLLV 65 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 F F+ I+GGGDVKLLT ++ +FL + G ++ + L Sbjct: 66 GFFLFSAGIIGGGDVKLLTVLSLAID-EHELANFLVAMTFCGALVVLAGLLF 116 >gi|167767555|ref|ZP_02439608.1| hypothetical protein CLOSS21_02074 [Clostridium sp. SS2/1] gi|167710847|gb|EDS21426.1| hypothetical protein CLOSS21_02074 [Clostridium sp. SS2/1] gi|291558487|emb|CBL37287.1| Flp pilus assembly protein, protease CpaA [butyrate-producing bacterium SSC/2] Length = 167 Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 5/109 (4%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+ AA+ D IPN+++ L+ A + GM + + + L+V I C F Sbjct: 7 LFLIMAAIYDYRDFKIPNKLNGAGALITLVLAGVSGMKAADMMIGV---LVVLISCGLLF 63 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +GGGDVKLL A+ G + FL I GI +V L R Sbjct: 64 YIGCLGGGDVKLLMVCAISIG--RAMPRFLILSFICNGIYAVIFLWKRK 110 >gi|258516876|ref|YP_003193098.1| peptidase A24A domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780581|gb|ACV64475.1| peptidase A24A domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 250 Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 1/120 (0%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L+ A++ DL+ +IPNR+ + L + L L + L V F++ Sbjct: 105 LFISLLIVASVIDLYHQIIPNRIILAGLIAGLPLTALQSWEVLKSGLMAFVVGGGFLLIV 164 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 + MGGGD+KL ++ G ++F + GG++ + ++ P+ Sbjct: 165 AIVSCGGMGGGDIKLGAMIGLYLGLNNLIVAFFL-AFLTGGVVGLVLMLSGRKGRKDPVP 223 >gi|159043670|ref|YP_001532464.1| peptidase A24A prepilin type IV [Dinoroseobacter shibae DFL 12] gi|157911430|gb|ABV92863.1| peptidase A24A prepilin type IV [Dinoroseobacter shibae DFL 12] Length = 169 Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 9/144 (6%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 I P CL F A SD+ IPNR +++LG F + L + A + + V + F Sbjct: 15 ILPICL-FVAWSDMKFMRIPNRSVLLLLGMFAIVGLLA-LPLLDYAWRWVHVIAVLAVGF 72 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 + ++G GD K + A + + L + F AIL G + + +P Sbjct: 73 VMSSAGLVGAGDAKFAAAMAPFVALQDALLVVVLFSAILLGAFA-----THRLARMLPAV 127 Query: 134 GMFVP--KSFLMKNKIPYGIAISM 155 P +S+ K P G+A+S Sbjct: 128 RRLTPDWESWTRKRDFPMGLALSG 151 >gi|261251284|ref|ZP_05943858.1| type IV prepilin peptidase TadV/CpaA [Vibrio orientalis CIP 102891] gi|260938157|gb|EEX94145.1| type IV prepilin peptidase TadV/CpaA [Vibrio orientalis CIP 102891] Length = 152 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 16/157 (10%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M ++ V +I C V + +SD +PN++ + + + +F G + Sbjct: 1 MNLDNIIEITVVIINIVCAVQSCISDHKHRTLPNKICKSLFITNFIASFYFGYFIQ---- 56 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 + I+F++ + G GD+KLL + ++ ++ L V LGG Sbjct: 57 SATITSIIFLVLLIVWLIGGFGAGDIKLLCAFSIGIKP-ELTIACLVLVGFLGG------ 109 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157 + + K+ L + IPYGI IS+ G Sbjct: 110 -----FQLVVMYLVGLMTKTNLFEKGIPYGIPISISG 141 >gi|126455283|ref|YP_001066148.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a] gi|217421473|ref|ZP_03452977.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576] gi|237812163|ref|YP_002896614.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei MSHR346] gi|126228925|gb|ABN92465.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a] gi|217395215|gb|EEC35233.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576] gi|237503315|gb|ACQ95633.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei MSHR346] Length = 172 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 9/148 (6%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ + L AL+DL + + ++ + A + A H +G F + Sbjct: 20 LVASWTLASLALADLRTRRLATFAVALVGALYAALALVGAPGDGGFASHAALGAAAFALG 79 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F + GGDVKL +W G + + VA G+ + + V + P Sbjct: 80 AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRAPR 134 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + F +PYG+A++ GGL++ Sbjct: 135 VLAW----FAPARGVPYGVALAAGGLLA 158 >gi|251791993|ref|YP_003006713.1| TadV [Aggregatibacter aphrophilus NJ8700] gi|247533380|gb|ACS96626.1| TadV [Aggregatibacter aphrophilus NJ8700] Length = 142 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 20/134 (14%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +D+ S I NR+ +++L + + + L +L L I F F N++G G Sbjct: 22 TDVRSRTIGNRIILLLLITIIPL-----SLLKYQTLFILPSLCALAIGFLLFTLNLVGAG 76 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVKL+ + F F F G++ + L R + Sbjct: 77 DVKLIAVLMLMIPNDEIFPFFFFTTFAGLGLIIISWLFFRKSV---------------KE 121 Query: 145 NKIPYGIAISMGGL 158 N +PYG+AIS+G + Sbjct: 122 NGLPYGVAISLGFM 135 >gi|300697745|ref|YP_003748406.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia solanacearum CFBP2957] gi|299074469|emb|CBJ54019.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia solanacearum CFBP2957] Length = 183 Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 12/153 (7%) Query: 17 FCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHL-LVGLIVFIICFC 74 V SDL S +PN + V ++ S +L F M + L G I Sbjct: 15 VLAVLIITSDLRSRRVPNWLVAVGLVLSIVLVKFGTVMALAYDWRDVWLGGAIALASFLP 74 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 +A MG GDVK T + GW ++ ++L G+ ++ IL +R + P Sbjct: 75 LYALGWMGAGDVKFFTVAGLLAGW-HGLVAIWLVSSVLAGVHALAILLLRRVDASAPSAW 133 Query: 135 MFVP---------KSFLMKNKIPYGIAISMGGL 158 M + + IPY +++G L Sbjct: 134 MLMRVCPALARWDPGHAGRRGIPYAAYMAIGLL 166 >gi|85859141|ref|YP_461343.1| flp pilus assembly protein, protease [Syntrophus aciditrophicus SB] gi|85722232|gb|ABC77175.1| flp pilus assembly protein, protease [Syntrophus aciditrophicus SB] Length = 180 Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 16/166 (9%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 + + + L+ A+++DL + I NR++ + F L + L + L + Sbjct: 10 AIIITLLVGILITASVTDLRAHRISNRLTYSTML-FGLIFYSLTAGFFGFLQSLSGLFLG 68 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 + F+ MG GDVKL+ + G F +FL A++GGI ++ IL + Sbjct: 69 LALLIVFYLVGGMGAGDVKLMAAVGSLLGPQGVFAAFL-GTALIGGIYALIILAAKGYLM 127 Query: 129 HIPIFGMFVPKSFLMKNK---IP-----------YGIAISMGGLIS 160 + + K+F M K IP YG+AIS+G L S Sbjct: 128 DTMKRFVLMLKTFFMTKKFIYIPPPRPEKAPLLCYGVAISLGTLAS 173 >gi|160897517|ref|YP_001563099.1| peptidase A24A prepilin type IV [Delftia acidovorans SPH-1] gi|160363101|gb|ABX34714.1| peptidase A24A prepilin type IV [Delftia acidovorans SPH-1] Length = 189 Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 1/111 (0%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIICFCFFA 77 L A+ DL + N + ++ L + +++ A + L GL+ F++ F+A Sbjct: 15 LATIAVMDLRIRRVRNWMVLLGLATGAAALASGAQPFQVSAWNALAGLLAGFVVLLPFYA 74 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 MG GDVK +WFG + L ++L G+ + +L++R +++ Sbjct: 75 LRWMGAGDVKFGAVAGLWFGLSFDLLLIWTGGSLLAGLHGLLVLSLRHLSH 125 >gi|254297714|ref|ZP_04965167.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e] gi|157807942|gb|EDO85112.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e] Length = 172 Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 9/148 (6%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ + L AL+DL + + ++ + A A H +G F + Sbjct: 20 LVASWTLASLALADLRTRRLATFAVALVGALYAAQALAGAPGDGGFASHAALGAAAFALG 79 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F + GGDVKL +W G + + VA G+ + + V + P Sbjct: 80 AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRAPR 134 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + F +PYG+A++ GGL++ Sbjct: 135 VLAW----FAPARGVPYGVALAAGGLLA 158 >gi|83747920|ref|ZP_00944952.1| PROBABLE PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN; CpaA2 [Ralstonia solanacearum UW551] gi|83725453|gb|EAP72599.1| PROBABLE PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN; CpaA2 [Ralstonia solanacearum UW551] Length = 183 Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 12/153 (7%) Query: 17 FCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC- 74 V SDL S +PN + V ++ S L F M + +G + + F Sbjct: 15 VLAVLIITSDLRSRRVPNWLVAVGLVLSIALVKFGTVMALAYDWRDVWLGGAIALAGFLP 74 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 +A MG GDVK T + GW ++ ++L G+ ++ IL +R P Sbjct: 75 LYALGWMGAGDVKFFTVAGLLAGW-HGLVAIWLVSSVLAGVHALAILLLRRADASAPSAW 133 Query: 135 MFVP---------KSFLMKNKIPYGIAISMGGL 158 M + + IPY +++G L Sbjct: 134 MLMRVCPALARWDPGHAGRRGIPYAAYMAIGLL 166 >gi|317498627|ref|ZP_07956920.1| type IV leader peptidase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894114|gb|EFV16303.1| type IV leader peptidase [Lachnospiraceae bacterium 5_1_63FAA] Length = 167 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 5/109 (4%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+ AA+ D IPN+++ L+ A + GM + + + L+V I C F Sbjct: 7 LFLIMAAIYDYRDFKIPNKLNGAGALITLVLAGVSGMKAADMMIGV---LVVLISCGLLF 63 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +GGGDVKLL A+ G + FL I GI +V L R Sbjct: 64 YIGCLGGGDVKLLMVCAISIG--RAMPRFLILSFICNGIYAVIFLWKRK 110 >gi|148976665|ref|ZP_01813352.1| hypothetical protein VSWAT3_19736 [Vibrionales bacterium SWAT-3] gi|145964016|gb|EDK29274.1| hypothetical protein VSWAT3_19736 [Vibrionales bacterium SWAT-3] Length = 176 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 1/135 (0%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ L+ ++ D+ +IPNR+ I+++ + ++ G ++ +A+ ++ F Sbjct: 6 LVFWALLIVISVFDVKENIIPNRILILLVFIYFISLINGGFTWDSLAVSFFGLVVFFFSG 65 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 + M GDVKLL ++ GW S L +F+ I G++ F L + N Sbjct: 66 LALYFLRAMSPGDVKLLGVIGLYIGWG-SLLDVSYFILISSGVIGTFYLLYNLANNSALT 124 Query: 133 FGMFVPKSFLMKNKI 147 + + ++ + + Sbjct: 125 VKGYFQEKLMLISGM 139 >gi|153833218|ref|ZP_01985885.1| TadV [Vibrio harveyi HY01] gi|148870489|gb|EDL69404.1| TadV [Vibrio harveyi HY01] Length = 139 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 20/150 (13%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 + ++ CL + ++ DL I N ++L + L L + L++ Sbjct: 1 MLVLFIVCL-YVSIVDLLHRKIQNHTLFILLLFQCFLSPLD--------LQFITFLLMLG 51 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 +A +G GD+K ++ S L A GG L++ L R Sbjct: 52 GGLILYALIWVGAGDIKYAAVLSLVIPLKDLPWS-LVMTAFAGGFLAIIYLVSRK----- 105 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 V + + IPYGIAIS+G + Sbjct: 106 -----LVTNTSNTQEGIPYGIAISIGFYLI 130 >gi|162421658|ref|YP_001604874.1| type IV prepilin peptidase family protein [Yersinia pestis Angola] gi|165925130|ref|ZP_02220962.1| type IV prepilin peptidase family [Yersinia pestis biovar Orientalis str. F1991016] gi|166008875|ref|ZP_02229773.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua str. E1979001] gi|167398990|ref|ZP_02304514.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|162354473|gb|ABX88421.1| type IV prepilin peptidase family [Yersinia pestis Angola] gi|165923330|gb|EDR40481.1| type IV prepilin peptidase family [Yersinia pestis biovar Orientalis str. F1991016] gi|165992214|gb|EDR44515.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua str. E1979001] gi|167051494|gb|EDR62902.1| type IV prepilin peptidase family [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 93 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 15/99 (15%) Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 + +++ ++ I + F FN+MGGGDVKL+T + S L+F+ + A+ Sbjct: 5 VSIIIPIVALFIGYIIFHFNVMGGGDVKLITVLLLALTAEQS-LNFIIYTAV-------- 55 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + + + G+ + + + K +PY +AI+ G L Sbjct: 56 ------MGGVVMVVGLLINRVDIQKRGVPYAVAITAGFL 88 >gi|254477437|ref|ZP_05090823.1| peptidase A24A, prepilin type IV [Ruegeria sp. R11] gi|214031680|gb|EEB72515.1| peptidase A24A, prepilin type IV [Ruegeria sp. R11] Length = 168 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 7/154 (4%) Query: 9 SAVFLIPPFCLVFA-ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 + FL L F ALSDL IPN ++ F++ L M + L+ Sbjct: 8 ALWFLPFVAPLCFVVALSDLRQMRIPNWTVDLLAAIFVIVGPFL-MSWSDYGWQLVHLPA 66 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F ++ ++G GD K + A + + V I +L LT R++ Sbjct: 67 GIALGFLCYSAGMVGAGDAKFAGAAAPFVAFG----DLSIVVMIFSAMLLAGFLTHRLVK 122 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 KS+ + +K P G+ + G L+ Y Sbjct: 123 YTPLRRLAPDWKSWDVGSKFPMGLCLG-GTLVVY 155 >gi|163742221|ref|ZP_02149609.1| hypothetical protein RG210_03383 [Phaeobacter gallaeciensis 2.10] gi|161384551|gb|EDQ08932.1| hypothetical protein RG210_03383 [Phaeobacter gallaeciensis 2.10] Length = 168 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 8/148 (5%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + P C V AL+DL IPN ++ F++ L M + LL I + F Sbjct: 15 VVPLCCV-VALNDLRHMRIPNWTVDLLGAIFVIVGPFL-MSWTDYGWQLLHLPIGIGLGF 72 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 ++ ++G GD K + A + + V I +L LT R+ Sbjct: 73 LCYSAGMVGAGDAKFAGAAAPFVVFG----DLSVVVMIFSAMLLAGFLTHRIAKYTPLRR 128 Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISY 161 KS+ + +K P G + +GG + + Sbjct: 129 LAPHWKSWDVGSKFPMG--LCLGGTLVF 154 >gi|261418359|ref|YP_003252041.1| peptidase A24A domain protein [Geobacillus sp. Y412MC61] gi|319767682|ref|YP_004133183.1| prepilin peptidase [Geobacillus sp. Y412MC52] gi|261374816|gb|ACX77559.1| peptidase A24A domain protein [Geobacillus sp. Y412MC61] gi|317112548|gb|ADU95040.1| Prepilin peptidase [Geobacillus sp. Y412MC52] Length = 251 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 18/145 (12%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIICFCFF 76 +SDL +IP+RV +V G FL+ ++ + + + L VG + + Sbjct: 109 LFAIIVVSDLRYMLIPDRVLLVFAGLFLVERLVIPFLPWADMLLGAAVGFSLLWLIAVL- 167 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 + MGGGDVKL GW L+F + G ++ + + + + Sbjct: 168 SKGGMGGGDVKLFAVLGFVLGWKMVLLAFFLAT-LYGTVIGLVGMALGRV---------- 216 Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161 +P+ AI++G L ++ Sbjct: 217 -----RRGKPMPFAPAIALGALTAF 236 >gi|304314578|ref|YP_003849725.1| hypothetical protein MTBMA_c08170 [Methanothermobacter marburgensis str. Marburg] gi|302588037|gb|ADL58412.1| conserved hypothetical protein [Methanothermobacter marburgensis str. Marburg] Length = 382 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 4/105 (3%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRV---SIVMLGSFLLTAFLLGMDYELIALHL 62 M +VF+ C +A+ SD+ +IPNR+ I + +F D + + Sbjct: 3 MELISVFIALIVCF-YASYSDIKRGLIPNRLTFPVIGLGLAFNALRAYTEADPWIFIYTV 61 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLF 107 + +F + + + GGDVKL T+ + PS + + Sbjct: 62 IFTAGIFALGYILWRMGAWAGGDVKLFTAITALLPFQPSIVDYTI 106 >gi|218676246|ref|YP_002395065.1| hypothetical protein VS_II0468 [Vibrio splendidus LGP32] gi|218324514|emb|CAV25986.1| putative membrane protein [Vibrio splendidus LGP32] Length = 152 Score = 50.7 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 16/139 (11%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L F D + IPN ++ + L L A G + L + ++ F++ F + Sbjct: 17 LILSFICFFDGWHRKIPNNLNKIALIFSHLVALNNGY----LMSSLPIAILCFVVFFILW 72 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 ++GGGDVKLL + + ++ L + LGG+L + V Sbjct: 73 YLKVIGGGDVKLLCALIISIQPNLVTIT-LICIGFLGGLLVFAMYIVGK----------- 120 Query: 137 VPKSFLMKNKIPYGIAISM 155 V IPYGI I++ Sbjct: 121 VRGLPSFTKGIPYGIPIAL 139 >gi|294495879|ref|YP_003542372.1| peptidase A24B, FlaK domain protein [Methanohalophilus mahii DSM 5219] gi|292666878|gb|ADE36727.1| Peptidase A24B, FlaK domain protein [Methanohalophilus mahii DSM 5219] Length = 255 Score = 50.7 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-----TAFLLGMDYELIAL 60 M+ A L+ L +A+ D+ + NRV ++ML F A + LI + Sbjct: 1 MIVIAKILLCLGFLSYASYRDIKERRVGNRVWVIMLAVFSPFIIYELATSSSLVTYLIQM 60 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102 + GLI F+ + F GG D KLL ++ F + P+F Sbjct: 61 AISFGLI-FVFSYVLFYLGAFGGADAKLLMVISIVFPFYPAF 101 >gi|323700357|ref|ZP_08112269.1| peptidase A24A prepilin type IV [Desulfovibrio sp. ND132] gi|323460289|gb|EGB16154.1| peptidase A24A prepilin type IV [Desulfovibrio desulfuricans ND132] Length = 182 Score = 50.7 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 17/166 (10%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 + + LV A ++D+ + I N +++ ++ + L+ + G + + + F Sbjct: 4 LIVIALATALVTATVTDIRNQRIYNWLTLPLILTGLVAHTVFG-GFAGLKFSAAGFALGF 62 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 + +MG GDVKL+ W G +F +FLF I GG+ ++ +L Sbjct: 63 AAMALPYFMGVMGAGDVKLMAGVGAWLGVEATFTAFLF-TCIAGGVYALAVLAFHREILK 121 Query: 130 ------------IPIFGMFVPKSFLMKNKIP---YGIAISMGGLIS 160 F +N +P YG+AI++G +++ Sbjct: 122 RVLRNITATFSVFMASRKFDFAPVTAENAMPRLCYGVAIAVGTVVA 167 >gi|302391025|ref|YP_003826845.1| peptidase A24A prepilin type IV [Acetohalobium arabaticum DSM 5501] gi|302203102|gb|ADL11780.1| peptidase A24A prepilin type IV [Acetohalobium arabaticum DSM 5501] Length = 160 Score = 50.7 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 10/154 (6%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 + ++ L A D+ +IPN ++ ++ L+ + + + L + Sbjct: 1 MNILLGIILAVAMWIDIKDKIIPNWLTFSLMLLGLIINLSID-GWSGLLFSLQGLGVGLA 59 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL--------T 122 I F +G GDVKL+ G L L +AI+GGI+S+FIL Sbjct: 60 IFLIPFVLGGLGAGDVKLVAGIGAVKGVKFVLLDSLV-IAIVGGIISLFILIQEKKLGRM 118 Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156 ++ + +P + + + PYG+A++ G Sbjct: 119 IKKVIYRLPFKSLSDREDQEGNDAFPYGVAVAFG 152 >gi|218710409|ref|YP_002418030.1| hypothetical protein VS_2446 [Vibrio splendidus LGP32] gi|218323428|emb|CAV19605.1| hypothetical protein VS_2446 [Vibrio splendidus LGP32] Length = 176 Score = 50.3 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 1/110 (0%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L+ ++ D+ IPN++ I+ + L+ F ++ + L ++ F Sbjct: 7 VFWALLIAVSVYDVEKHRIPNKILILFFVFYFLSMFNSNYTFDSFLMSLFGSVVFFCFGL 66 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 F+ M GDVKLL ++ GW L +F+ + G++ VF L Sbjct: 67 LFYFLRAMSAGDVKLLGVVGMYLGWG-QLLDASYFILVSSGVVGVFYLLY 115 >gi|83749640|ref|ZP_00946623.1| Prepilin Peptidase; cpaA1 [Ralstonia solanacearum UW551] gi|207728108|ref|YP_002256502.1| prepilin peptidase protein [Ralstonia solanacearum MolK2] gi|207744156|ref|YP_002260548.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609] gi|83723701|gb|EAP70896.1| Prepilin Peptidase; cpaA1 [Ralstonia solanacearum UW551] gi|206591353|emb|CAQ56965.1| prepilin peptidase protein [Ralstonia solanacearum MolK2] gi|206595560|emb|CAQ62487.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609] Length = 177 Score = 50.3 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 L + AA SD+ + IPN + L + L+ + L + Sbjct: 7 LANLSLIVLIAIAAASDVRARRIPNWLVGSGLVAALIGQCVAQGLAAGGMAWLGGTAVGM 66 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 +C + MG GDVKL+ + + G +F F + GG+L++ ++ +R Sbjct: 67 GMCIGIYVLGGMGAGDVKLMGAIGAFMGPFGAF-HVAFVSFLAGGVLALVMVLLRREGQR 125 Query: 130 -----------IPIFGMFVPKSFLMKN-----KIPYGIAISMGGLIS 160 +P G +P + ++PY +A + G L+ Sbjct: 126 SLAGVSTLLLSLPFGGKAMPSQQHGEKRSGTIQLPYAVAFAAGTLLV 172 >gi|330830434|ref|YP_004393386.1| Leader peptidase PilD [Aeromonas veronii B565] gi|328805570|gb|AEB50769.1| Leader peptidase PilD [Aeromonas veronii B565] Length = 127 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 21/145 (14%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 + + +SDLF IPN +V+ A +G L L++ ++ ++ + Sbjct: 1 MVCWCLVSDLFERRIPNLAVLVL-------ALWVGWLLPFNPLSLVLAILTLLLGLVAYH 53 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 G GD KLL +G + L +A GG+LS+ L + Sbjct: 54 RGWCGAGDSKLLAVCL--YGAGEQWPELLLLMAFSGGLLSLVCLIHSRL----------- 100 Query: 138 PKSFLMKNKIPYGIAISMGGLISYP 162 + +PYG+AI ++ P Sbjct: 101 -RPSPNPTTVPYGVAILWAAALTTP 124 >gi|17549312|ref|NP_522652.1| prepilin peptidase transmembrane protein [Ralstonia solanacearum GMI1000] gi|17431564|emb|CAD18242.1| probable prepilin peptidase transmembrane protein [Ralstonia solanacearum GMI1000] Length = 168 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 9/119 (7%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTA-----FLLGMDYELIALHLLVGLIVFIICFCFFAFN 79 SDL S +PN + V L ++ L D+ + L G I +A Sbjct: 23 SDLRSRRVPNWLVAVGLVLSIVLVKFGSVVALAYDWRDVWL---GGAIALAGFLPLYALG 79 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 MG GDVK + GW ++ ++L G+ ++ IL +R P M + Sbjct: 80 WMGAGDVKFFAVAGLLAGW-HGLVAIWLVSSVLAGVHALAILLLRRADASAPAGWMLMR 137 >gi|76809350|ref|YP_333433.1| putative fimbriae assembly-like protein [Burkholderia pseudomallei 1710b] gi|254258317|ref|ZP_04949371.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a] gi|76578803|gb|ABA48278.1| putative fimbriae assembly-related protein [Burkholderia pseudomallei 1710b] gi|254217006|gb|EET06390.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a] Length = 176 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 9/148 (6%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ + L AL+DL + + ++ + A A H +G F + Sbjct: 24 LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALG 83 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F + GGDVKL +W G + + VA G+ + + V + +P Sbjct: 84 AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRVPR 138 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + F +PYG+A++ GGL++ Sbjct: 139 VLAW----FAPARGVPYGVALAAGGLLA 162 >gi|209809168|ref|YP_002264706.1| type IV leader peptidase [Aliivibrio salmonicida LFI1238] gi|208010730|emb|CAQ81121.1| type IV leader peptidase [Aliivibrio salmonicida LFI1238] Length = 144 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 18/145 (12%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + F D+ +I NR +++ ++ + ++ I+FI F Sbjct: 11 LLAAISYFICYQDVTKRIISNRACMLVFIICIMIGVVT-----DNYENIFYPAIIFITGF 65 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 F+FNI+ GD+KL + ++ L + + +LGGI+++ L + Sbjct: 66 VLFSFNIIAAGDIKLAAAFSIAVNPKYQLL-VITIILLLGGIIALGQLAWKKC------- 117 Query: 134 GMFVPKSFLMKNKIPYGIAISMGGL 158 K+ + +PYG+ I +G L Sbjct: 118 -----KTNEKIDGVPYGVPICIGYL 137 >gi|86138001|ref|ZP_01056577.1| membrane protein, putative [Roseobacter sp. MED193] gi|85825593|gb|EAQ45792.1| membrane protein, putative [Roseobacter sp. MED193] Length = 168 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 1/97 (1%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + P C AA +DL S IPN ++ + +++ + + LL I I F Sbjct: 18 VLPLCFA-AAYTDLSSMRIPNWITDSLGAVYVILGLFIMPSWADYGWQLLHLPIGVAIGF 76 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110 F++ +MG GD K + + A + + A Sbjct: 77 LFYSAGVMGAGDAKFIGAAAPLVVLADLPALIMIYTA 113 >gi|297529211|ref|YP_003670486.1| prepilin peptidase [Geobacillus sp. C56-T3] gi|297252463|gb|ADI25909.1| Prepilin peptidase [Geobacillus sp. C56-T3] Length = 248 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 18/145 (12%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIICFCFF 76 +SDL +IP+RV +V G FL+ ++ + + + L VG + + Sbjct: 106 LFAIIVVSDLRYMLIPDRVLLVFAGLFLVERLVIPFLPWADMLLGAAVGFSLLWLIAVL- 164 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 + MGGGDVKL GW L+F + G ++ + + + + Sbjct: 165 SKGGMGGGDVKLFAVLGFVLGWKMVLLAFFLAT-LYGTVIGLVGMALGRV---------- 213 Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161 +P+ AI++G L ++ Sbjct: 214 -----RRGKPMPFAPAIALGALTAF 233 >gi|254488438|ref|ZP_05101643.1| peptidase A24A, prepilin type IV [Roseobacter sp. GAI101] gi|214045307|gb|EEB85945.1| peptidase A24A, prepilin type IV [Roseobacter sp. GAI101] Length = 164 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 6/143 (4%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + P CL + A +D+ S I N I + F++ ++ + +E HLL +I ++ Sbjct: 15 VLPLCL-YTAYTDIASMRITNPTVITLAAVFVIIGPVV-LPFETYLWHLLAMVIALVVGI 72 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 A +MG GD K + + + +A+ L LT R+ + + Sbjct: 73 ILNAGGVMGAGDAKFIAAA----TPFIALGDLRLVMALFMATLLAAALTHRIAKHTVARR 128 Query: 134 GMFVPKSFLMKNKIPYGIAISMG 156 S+ K P G+A+ Sbjct: 129 FAPTWTSWQQGKKFPMGLALGPA 151 >gi|323529416|ref|YP_004231568.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001] gi|323386418|gb|ADX58508.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001] Length = 176 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 10/155 (6%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 +V AA +DL IPN + L LL L L ++ + F+ Sbjct: 17 ALVVAAASTDLQCRRIPNLLVGAGLFGALLVQCWLKGTGAGAMAWLTGAVVGLALFLPFY 76 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT----------VRMI 126 M GDVKLL W G F + L I G + V I+ +R+I Sbjct: 77 LVRGMAAGDVKLLAMVGAWIGPLLVFYAALATCVIGGAWMLVLIVRRHQLGKVWANLRVI 136 Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + S +PYG+AI+ G + Sbjct: 137 AHPALQGSGSARDSIDSVGSVPYGVAIAAGTIAVL 171 >gi|187250653|ref|YP_001875135.1| type II secretion system subunit O [Elusimicrobium minutum Pei191] gi|186970813|gb|ACC97798.1| Type II secretion system subunit [Elusimicrobium minutum Pei191] Length = 260 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 27/164 (16%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF----LLGMDYELIALHL 62 +++ V L+ + L+ +++ D+ +IP+R SI ++ L + G ++ L Sbjct: 98 IWTGVVLVVVYSLIISSVIDIKIMIIPDRFSIGLIVWGLAFFWCNPNFSGTTLQMFGQSL 157 Query: 63 LVGLIVF-------IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115 L + F ++ + F MGGGD+KL+ GW ++ L ++G + Sbjct: 158 LGAAVGFGGLLAVALLGYALFRKEAMGGGDIKLMGGVGALLGW-QGVITTLVIACLIGLV 216 Query: 116 LSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 S+F++ V K + IP+G +S G L+ Sbjct: 217 YSIFLM---------------VTKRADKGSAIPFGPFLSFGALV 245 >gi|53719433|ref|YP_108419.1| putative fimbriae assembly-related protein [Burkholderia pseudomallei K96243] gi|126439772|ref|YP_001058906.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668] gi|52209847|emb|CAH35819.1| putative fimbriae assembly-related protein [Burkholderia pseudomallei K96243] gi|126219265|gb|ABN82771.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668] Length = 172 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 9/148 (6%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ + L AL+DL + + ++ + A A H +G F + Sbjct: 20 LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALG 79 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F + GGDVKL +W G + + VA G+ + + V + P Sbjct: 80 AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRAPR 134 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + F +PYG+A++ GGL++ Sbjct: 135 VLAW----FAPARGVPYGVALAAGGLLA 158 >gi|323491529|ref|ZP_08096708.1| hypothetical protein VIBR0546_18006 [Vibrio brasiliensis LMG 20546] gi|323314105|gb|EGA67190.1| hypothetical protein VIBR0546_18006 [Vibrio brasiliensis LMG 20546] Length = 172 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L A+SD IPN + ++++ + + DY + + G+ FI Sbjct: 3 MVVWIVLFAIAVSDAKEHRIPNYLLLLVILISFINKAFVIQDYNFLLWSFVSGITCFIAA 62 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 C + +M GDVKLL W G + L ++++AI ++ F +R+ + Sbjct: 63 LCLYFLKVMAPGDVKLLGVIGFWLG-SEHILGAVYWIAISSVVIGGFYALLRLAESP 118 >gi|307726372|ref|YP_003909585.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1003] gi|307586897|gb|ADN60294.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1003] Length = 176 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 14/155 (9%) Query: 19 LVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 +V AA +D+ IPN + ++ + ++ +L G+ IA L F + F+ Sbjct: 19 VVAAASTDMQCRRIPNLLVGAGLISALIVQCWLKGIGAGAIAW-LAGAGTGFALFLPFYL 77 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT-----------VRMI 126 M GDVKLL W G F + L ++GG+ + ++ +R+I Sbjct: 78 VRGMAAGDVKLLAMVGAWIGPLLVFYAALV-TCVVGGVWMLALIARRHQWGKVWANLRVI 136 Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + S +PYG+AI+ G + Sbjct: 137 AHPALQGPGTARDSIESVGSVPYGVAIAAGTITVL 171 >gi|212635456|ref|YP_002311981.1| peptidase A24A, prepilin type IV [Shewanella piezotolerans WP3] gi|212556940|gb|ACJ29394.1| Peptidase A24A, prepilin type IV [Shewanella piezotolerans WP3] Length = 187 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 18/177 (10%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 +I V A SDL IPN + ++ + F + ++ + + + + + FI+ Sbjct: 11 VIAGVFFVLAISSDLSKERIPNWLCLLAIFLGFAVNSYFAQLS--GLLVSFVGFSLAFIL 68 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV-------- 123 F F I+G GD+KL+ G P+ L++ A++ G L+ +L Sbjct: 69 LFPTFILRILGAGDIKLMMGIGAIMG--PTLLAWSILYAVIAGALTSILLIAWKTGLSGI 126 Query: 124 -----RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 R + K+PY A+++G L + + +S Sbjct: 127 KKTAKRYWDCFYLRTYFKPEQGEAAGEKVPYAPALALGWLWACSLNPQISQLYNSIS 183 >gi|323702303|ref|ZP_08113969.1| Prepilin peptidase [Desulfotomaculum nigrificans DSM 574] gi|323532793|gb|EGB22666.1| Prepilin peptidase [Desulfotomaculum nigrificans DSM 574] Length = 244 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 1/110 (0%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ L+ + DL +IP+++ + +++ + ++Y + L+ ++ Sbjct: 99 LLFIATLIVISFIDLDHYIIPDKILFFFIVAWVAFIPFIPINYINSLIGLVSAGG-LLLF 157 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + MGGGD+KL ++ GW + L+ + G + + IL Sbjct: 158 IALLSKGGMGGGDIKLAAVIGLYLGWPNALLAMFLACFLAGIVGILLILL 207 >gi|239817410|ref|YP_002946320.1| peptidase A24A prepilin type IV [Variovorax paradoxus S110] gi|239803987|gb|ACS21054.1| peptidase A24A prepilin type IV [Variovorax paradoxus S110] Length = 165 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 2/139 (1%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FII 71 + L+ + D IPN + + L G F Sbjct: 3 IAFLLWLILVVVYDFRMRRIPNWLVLAGAALAFAALATGAGPLGQDWQAALFGAGAGFAT 62 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 F+A +MG GDVK + +W G P+ S +++ G S+ L ++ Sbjct: 63 LLLFYATGLMGAGDVKFAGALGLWVGL-PALASIWIVASLVAGAHSILWLALKRWPFFPR 121 Query: 132 IFGMFVPKSFLMKNKIPYG 150 + + S + ++ IP G Sbjct: 122 LALVLAGPSRVPESGIPSG 140 >gi|209546486|ref|YP_002278404.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537730|gb|ACI57664.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 178 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 12/165 (7%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL---- 62 + + + ++AA +D + IPN V + ++ ++L A + + E + L Sbjct: 4 LVVVINYLSVLLFLYAAWTDFRTWKIPNTVVLALVTLYVLRAVAVILSSEDVGAALFASS 63 Query: 63 ------LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116 GL++F++ +A + G GD KL ++ GW S L F FF+ +LG I+ Sbjct: 64 GIGGDVGAGLLMFMLGVVLWALRLFGAGDAKLFLPIGLFVGW-HSMLPFSFFLLVLG-IV 121 Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 ++ L + + + K+PYG+ + L++ Sbjct: 122 TLLALRLPVPLPVAHLAFFMRIAEIRASRKVPYGVVMVFAVLLTL 166 >gi|325108088|ref|YP_004269156.1| peptidase A24A prepilin type IV [Planctomyces brasiliensis DSM 5305] gi|324968356|gb|ADY59134.1| peptidase A24A prepilin type IV [Planctomyces brasiliensis DSM 5305] Length = 182 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 19/171 (11%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L+ AA D +PN ++ M+ S L+ ++ + + L + + Sbjct: 14 VVALILIVAAWIDGKELRVPNWITFPMILSGLVYCSVMN-GWIGLGEGLWGMTVGLLTLL 72 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 +A MG GDVKL+ W G T ++ +F V I+G ++++ ++ R Sbjct: 73 PLYAVGGMGAGDVKLMAGIGAWLGATVTWYAFCVSV-IVGAVMAIIMVLYRRSWEKHYNN 131 Query: 134 GMFVPKSFLMKNK-----------------IPYGIAISMGGLISYPDSYLF 167 + + F+ K +PYGI I +G + + + + Sbjct: 132 FLVIIMEFITVKKPEKLYAIAAERKPNMLLLPYGIPICIGSIAYFFYTGMI 182 >gi|126737246|ref|ZP_01752981.1| hypothetical protein RSK20926_12464 [Roseobacter sp. SK209-2-6] gi|126721831|gb|EBA18534.1| hypothetical protein RSK20926_12464 [Roseobacter sp. SK209-2-6] Length = 168 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 5/149 (3%) Query: 8 FSAVFLIPPFCLVFAA-LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + FL L +AA L+DL IPN ++ + ++L + + LL Sbjct: 10 AALWFLPFVLPLCYAAALTDLRGMRIPNWINDSLAAVYVLVGLFVMPTWADYGWQLLHLP 69 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 I F F++ ++G GD K + A + ++ F A L + T R++ Sbjct: 70 IGIAFGFLFYSSGMIGAGDAKFAGAAAPFIAFSDLPALMTIFCANLLAAFA----THRLV 125 Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISM 155 + KS+ +K P G+ + Sbjct: 126 KHTGLRRLAPGWKSWNTGSKFPMGLCLGA 154 >gi|239827894|ref|YP_002950518.1| peptidase A24A domain protein [Geobacillus sp. WCH70] gi|239808187|gb|ACS25252.1| peptidase A24A domain protein [Geobacillus sp. WCH70] Length = 248 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 16/144 (11%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 L+ +SD+ MIP++V +V FLL + AL + + + Sbjct: 105 LLMIIFVSDVRYMMIPDKVLLVFAAIFLLERLFIPFIPWRDALVGAAAGFLLLFLIAVIS 164 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 MGGGD+KL GW L+F F G ++ + + + + P Sbjct: 165 KGGMGGGDIKLFALLGFVLGWKTVLLAFFFST-FYGTVIGLIGMALGKVRRREP------ 217 Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161 +P+G AI +G L +Y Sbjct: 218 ---------MPFGPAIVLGSLTAY 232 >gi|86360578|ref|YP_472466.1| putative cpaA pilus assembly protein [Rhizobium etli CFN 42] gi|86284680|gb|ABC93739.1| putative cpaA pilus assembly protein [Rhizobium etli CFN 42] Length = 181 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 12/164 (7%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL---- 62 + V + ++AA +D S IPN V + ++ + L A + E + L Sbjct: 7 MIVVVNSLSVLLFLYAAWTDFRSWKIPNAVVLALMTVYALRAVAAMLGSEDLGAALFASS 66 Query: 63 ------LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116 GL++F++ +AF + G GD KL ++ GW + + G++ Sbjct: 67 GIGGDVGAGLLMFMLGVALWAFRLFGAGDAKLFLPIGLFVGWHGMLPFSFLLLVL--GVM 124 Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 ++ L + + + + + KIPYG+ + L++ Sbjct: 125 TLLALRLPVPLSVAHLAFFMRIEEIRASRKIPYGVIMVFATLLT 168 >gi|148979563|ref|ZP_01815594.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrionales bacterium SWAT-3] gi|145961747|gb|EDK27043.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrionales bacterium SWAT-3] Length = 289 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 7/126 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64 +++ + F L+ A DL + ++P+++++ ++ S + A + + + + + Sbjct: 128 LYAIALIFFTFALITATFIDLDTMLLPDQITLPLVWSGIALALFNISPVSLQDSVVGAMA 187 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + +++G + + Sbjct: 188 GYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QHLPMIILLSSLVGLVFGLIQ 246 Query: 121 LTVRMI 126 L ++ Sbjct: 247 LRLKQQ 252 >gi|84393981|ref|ZP_00992720.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio splendidus 12B01] gi|84375375|gb|EAP92283.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio splendidus 12B01] Length = 289 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 7/124 (5%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66 + + F L+ A DL + ++P+++++ ++ S + A + + + + + G Sbjct: 130 AIALIFFTFALITATFIDLDTMLLPDQITLPLVWSGIALALFNISPVSLQDSVIGAMAGY 189 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + + F MG GD KLL + W GW + +++G + + L Sbjct: 190 LALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QHLPMIILLSSLVGLVFGLIQLR 248 Query: 123 VRMI 126 ++ Sbjct: 249 LKQQ 252 >gi|312110054|ref|YP_003988370.1| prepilin peptidase [Geobacillus sp. Y4.1MC1] gi|311215155|gb|ADP73759.1| Prepilin peptidase [Geobacillus sp. Y4.1MC1] Length = 248 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 16/144 (11%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 L+ +SD+ MIP++V +V FL + AL + + + Sbjct: 105 LLMIIFVSDVRYMMIPDKVLLVFAVIFLFERLFIPFLPWRDALIGAAAGFLLLFLIAVIS 164 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 MGGGD+KL GW L+F F I G + + + + + P Sbjct: 165 KGGMGGGDIKLFALLGFVLGWKTVLLAFFFST-IYGTAIGLIGMALGKVRRREP------ 217 Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161 +P+G AI +G L +Y Sbjct: 218 ---------MPFGPAIVLGSLTAY 232 >gi|91772142|ref|YP_564834.1| peptidase A24B, FlaK-like [Methanococcoides burtonii DSM 6242] gi|91711157|gb|ABE51084.1| preflagellin peptidase FlaK [Methanococcoides burtonii DSM 6242] Length = 252 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLL 63 M+ L+ L+++ SD+ + + N++ +MLG+ + + L+ Sbjct: 1 MIELLKVLVCLLFLLYSCYSDIKTRRVTNKLWPIMLGAAAPLIIYDIARYGIPYVKWTLI 60 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102 + +F+ + F F GG D K+L ++ P+ Sbjct: 61 SFIFIFVFVYILFYFGAFGGADAKILMVISLILPIYPAL 99 >gi|294102193|ref|YP_003554051.1| peptidase A24A prepilin type IV [Aminobacterium colombiense DSM 12261] gi|293617173|gb|ADE57327.1| peptidase A24A prepilin type IV [Aminobacterium colombiense DSM 12261] Length = 158 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 15/150 (10%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L +A DL +PN + LL A L Y +++ L I + Sbjct: 7 AVLCWAGFYDLKYKKVPNW----LTYGLLLAAILFHSFYGAVSMSLFGAGIGLGWFLIPY 62 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR----------MI 126 MG GDVKLL + P L + + ++ GGI+ + + R Sbjct: 63 LLGGMGAGDVKLLAAAGA-MAAWPGALYVVLYSSVAGGIVVIALTLKRVDFQDFWVALAG 121 Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156 +++ K K+PY +AI++G Sbjct: 122 GPRRFFKSIWMSGRERRKEKVPYALAIAIG 151 >gi|218710511|ref|YP_002418132.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio splendidus LGP32] gi|218323530|emb|CAV19721.1| Type IV prepilin-like proteins leader peptide processing enzyme [Vibrio splendidus LGP32] Length = 289 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 7/124 (5%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66 + + F L+ A DL + ++P+++++ ++ S + A + + + + + G Sbjct: 130 AIALIFFTFALIAATFIDLDTMLLPDQITLPLVWSGIALALFNISPVSLQDSVVGAMAGY 189 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + + F MG GD KLL + W GW + +++G + + L Sbjct: 190 LALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QHLPMIILLSSLVGLVFGLIQLR 248 Query: 123 VRMI 126 ++ Sbjct: 249 LKQQ 252 >gi|90411987|ref|ZP_01219994.1| putative leader peptidase PilD [Photobacterium profundum 3TCK] gi|90326965|gb|EAS43344.1| putative leader peptidase PilD [Photobacterium profundum 3TCK] Length = 299 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 58/135 (42%), Gaps = 7/135 (5%) Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALH 61 +++ + F L+ D+ + ++P+++++ ++ + + A L + + + Sbjct: 135 PPSLWAVAVIFFSFALIALTFIDIDTMLLPDQITLPLMWAGIAAALVGLSPVSLQDAIIG 194 Query: 62 LLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117 +VG + F F MG GD KLL + W GW S + +++G + Sbjct: 195 AMVGYLSLWSLFWCFKLITGKEGMGYGDFKLLAALGAWLGW-QSLPFVVLLSSLVGAVCG 253 Query: 118 VFILTVRMITNHIPI 132 + +L V+ + P Sbjct: 254 IILLRVQRSDSQTPF 268 >gi|302390457|ref|YP_003826278.1| type 4 prepilin peptidase 1 [Thermosediminibacter oceani DSM 16646] gi|302201085|gb|ADL08655.1| type 4 prepilin peptidase 1 [Thermosediminibacter oceani DSM 16646] Length = 251 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 16/149 (10%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 +L L+ AA DL +IP+R+ + + ++ F +L F+ Sbjct: 102 YLFLGAVLIAAAFIDLEHYLIPDRLVLAGFAAAIVLGFAARDVGVWSSLAGSAAGAGFLF 161 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 F+ MG GDVKL ++ GW P LF I GG+++ +L R+ Sbjct: 162 AIVVFSKGGMGCGDVKLAAVAGLFIGW-PLAALALFLAVITGGLVAAVLLLFRLKGP--- 217 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 K+ IP+G I+ G L + Sbjct: 218 ------------KDAIPFGPFIAAGTLAA 234 >gi|107028251|ref|YP_625346.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054] gi|116687162|ref|YP_840409.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424] gi|105897415|gb|ABF80373.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054] gi|116652877|gb|ABK13516.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424] Length = 179 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 16/161 (9%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L V AA +D+ + IPNR+ ++ L L+ LL + L F + Sbjct: 12 LCVTLLAVAAASTDIATRRIPNRLVLLGLAGALVAQCLLQGVPAGVLGWLAGAATGFGLL 71 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-------- 124 F+ M GDVKL+ + W G +F + + GGI ++ +R Sbjct: 72 LPFYLLRGMAAGDVKLMLAIGAWVGAEMTFY-IVLATFLAGGIGAIAYALLRGRMRQMWT 130 Query: 125 -------MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + P +PYG+AI++G L Sbjct: 131 NVRTLIVRRSQAARAEADDGPVEIASVGTLPYGVAIAVGTL 171 >gi|197295150|ref|YP_002153691.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia J2315] gi|195944629|emb|CAR57233.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia J2315] Length = 179 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 16/161 (9%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L V AA +D+ + IPNR+ ++ L L+ LL + L F + Sbjct: 12 LCVTLLAVAAASTDIATRRIPNRLVLLGLVGALIAQCLLHGVPAGVLGWLAGAATGFGLL 71 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-------- 124 F+ M GDVKL+ + W G +F + + GGI ++ +R Sbjct: 72 LPFYLLRGMAAGDVKLMLAIGAWVGAEMTFY-IVLATFLAGGIGAIAYALLRGRMRQMWA 130 Query: 125 -------MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + P +PYG+AI+ G L Sbjct: 131 NVRTLIVRRSPAARAEADDGPAGITSVGTLPYGVAIAAGTL 171 >gi|170734871|ref|YP_001773985.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3] gi|169820909|gb|ACA95490.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3] Length = 179 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 16/161 (9%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L V AA +D+ S IPNR+ ++ L L+ LL + L F + Sbjct: 12 LCVTLLAVAAASTDIASRRIPNRLVLLGLAGALVAQCLLHGVPAGVLGWLAGAATGFGLL 71 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F+ M GDVKL+ + W G +F + + GGI ++ +R + Sbjct: 72 LPFYLLRGMAAGDVKLMLAIGAWVGAEMTFY-IVLATFLAGGIGAIAYALLRGRMRQVWT 130 Query: 133 FGMFV---------------PKSFLMKNKIPYGIAISMGGL 158 + P +PYG+AI++G L Sbjct: 131 NVRTLIVRRSQAARAEADDGPVEIASVGTLPYGVAIAVGTL 171 >gi|328470515|gb|EGF41426.1| hypothetical protein VP10329_06942 [Vibrio parahaemolyticus 10329] Length = 147 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 16/138 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 D+ ++ +R +++ + LL+ F L V VFI F + NI+GG Sbjct: 21 YGDIRYRIVKHRFLLIIFITSLLSLFFT----PEPLTQLAVSSSVFICFFILWLINIVGG 76 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GDVKL+ + + L+ + + +LGGI + + + + P Sbjct: 77 GDVKLIGALFLGVN-DEYMLAAIVAIGLLGGIQILVMWLMSVYRKKTPF----------- 124 Query: 144 KNKIPYGIAISMGGLISY 161 +N IPY I I + GL + Sbjct: 125 ENGIPYTIPIGISGLFFF 142 >gi|223984525|ref|ZP_03634657.1| hypothetical protein HOLDEFILI_01952 [Holdemania filiformis DSM 12042] gi|223963511|gb|EEF67891.1| hypothetical protein HOLDEFILI_01952 [Holdemania filiformis DSM 12042] Length = 247 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 4/116 (3%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + + + + L+ A+ DL + IP+R+S+ +L L L ++ I +L L Sbjct: 98 LTAVLHCLFLSILIVIAMIDLDTMEIPDRLSVFILI---LAVIALALEPSSIPSRILGAL 154 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 I+ + + N MGGGDVK++ + + G P L+ + +G I +++++ Sbjct: 155 IISVPFWILSRLNAMGGGDVKIMCAAGFYLG-APLVLTAFVLSSFIGAIAALYLMI 209 >gi|319941904|ref|ZP_08016225.1| hypothetical protein HMPREF9464_01444 [Sutterella wadsworthensis 3_1_45B] gi|319804557|gb|EFW01427.1| hypothetical protein HMPREF9464_01444 [Sutterella wadsworthensis 3_1_45B] Length = 151 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 19/140 (13%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA-FNIM 81 + SDL IPN ++++ + ++ A++ G + L + + ++ F A ++ Sbjct: 26 SWSDLTKREIPNAAAVLLGLTAVVDAWIGGSPLQAGWLGCI---SILLVGFPVSAYLGLI 82 Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141 G GD+KLL + A+W + L L A GG+L++ L + ++ Sbjct: 83 GAGDIKLLAAAALW--TSARTLDLLLITAWAGGVLALLYLCLNLVRTR------------ 128 Query: 142 LMKNKIPYGIAISMGGLISY 161 +IPYG+A+S+ L+ Sbjct: 129 -RTTEIPYGVAVSLSLLLML 147 >gi|86144321|ref|ZP_01062653.1| putative membrane protein [Vibrio sp. MED222] gi|85837220|gb|EAQ55332.1| putative membrane protein [Vibrio sp. MED222] Length = 152 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 16/139 (11%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L F D + IPN ++ + L + A G + L + ++ F++ F + Sbjct: 17 LILSFVCFFDGWHRKIPNNLNKIALIFSNIVALNNGY----LMSSLPIAILCFVVFFILW 72 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 ++G GDVKLL A+ G P+ ++ G VF + + +P F Sbjct: 73 YLKVIGAGDVKLL--CALIIGIQPNLVTITLICIGFLGGFLVFAMYIVGKVRGLPSF--- 127 Query: 137 VPKSFLMKNKIPYGIAISM 155 IPYGI I+M Sbjct: 128 -------TKGIPYGIPIAM 139 >gi|86148308|ref|ZP_01066603.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio sp. MED222] gi|85833933|gb|EAQ52096.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio sp. MED222] Length = 289 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 7/124 (5%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66 + + F L+ A DL + ++P+++++ ++ S + A + + + + + G Sbjct: 130 AIALIFFTFALIAATFIDLDTMLLPDQITLPLVWSGIALALFNISPVSLQDSVVGAMAGY 189 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + + F MG GD KLL + W GW + +++G + + L Sbjct: 190 LALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QHLPMIILLSSLVGLVFGLTQLR 248 Query: 123 VRMI 126 ++ Sbjct: 249 LKQQ 252 >gi|23098072|ref|NP_691538.1| leader peptide processing enzyme [Oceanobacillus iheyensis HTE831] gi|22776297|dbj|BAC12573.1| leader peptide processing enzyme (late competence protein) [Oceanobacillus iheyensis HTE831] Length = 251 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 16/139 (11%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82 +SD +IPN++ + L F++ LL +D I + MG Sbjct: 114 CISDFIYMVIPNKLLLFFLPIFIILRLLLPLDPWWSMFTGAAIGFGIIFLIILISRGGMG 173 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142 GD+KLL + G L+F I+G ++S+ +L+V +I + P Sbjct: 174 AGDMKLLGLAGIVLGVEKIILAFFLAC-IIGSVISIVLLSVHLIQRNKPF---------- 222 Query: 143 MKNKIPYGIAISMGGLISY 161 P+G I++G LISY Sbjct: 223 -----PFGPFIAIGILISY 236 >gi|85705160|ref|ZP_01036260.1| membrane protein, putative [Roseovarius sp. 217] gi|85670482|gb|EAQ25343.1| membrane protein, putative [Roseovarius sp. 217] Length = 166 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 8/156 (5%) Query: 3 ESKMVFSAVFLIPPFCL---VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA 59 ++ A PF L V+ A SDL IPN + ++G FL+ + + Sbjct: 2 TLEITAQAALWFLPFVLPVCVWVAWSDLSRMKIPNTAVLTLVGIFLVVGLIA-LPISDYP 60 Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 L ++ + A +MG GD K + + A + + L F A L G Sbjct: 61 WRLAHLAVMLVAGIAMNAAGLMGAGDAKFIAAAAPFVALGDAATLCLIFAATLLGAF--- 117 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155 +T R+I +S+ K P G A+ Sbjct: 118 -VTHRVIKYSPLRRLAPDWQSWNTGKKFPMGFALGG 152 >gi|20091920|ref|NP_617995.1| hypothetical protein MA3102 [Methanosarcina acetivorans C2A] gi|19917119|gb|AAM06475.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 272 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 6/137 (4%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPN--RVSIVMLGSFLLTAFLLGMDYELIALHLL 63 M+ L L+++ SDL + + N +++ GS + L + L Sbjct: 19 MIEILKILFAMAFLLYSCYSDLKARRVSNGVWKYMLVSGSVFVIYELFTGGTPYLKALFL 78 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG----GILSVF 119 G++VFI + F GGGD K L ++ F P F +LG G+ ++ Sbjct: 79 SGVVVFISVYILFHLGAFGGGDAKGLLVLSILFPLYPIFQFSGEAYPLLGRPLIGLFTLT 138 Query: 120 ILTVRMITNHIPIFGMF 136 +L ++ + GMF Sbjct: 139 VLGNALLLTALIPLGMF 155 >gi|296331648|ref|ZP_06874117.1| membrane protease and transmethylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675393|ref|YP_003867065.1| membrane protease and transmethylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151243|gb|EFG92123.1| membrane protease and transmethylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413637|gb|ADM38756.1| membrane protease and transmethylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 248 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 16/149 (10%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L+ A++D+ +IPNR+ I L + +D ++L +F+ Sbjct: 100 VVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYVSLLGAAAGFLFLTL 159 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 +GGGD+KL G +F F V I + +LT R Sbjct: 160 IAAITHGGIGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAATVLTGR-------- 211 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + +P+ AI+ G +++Y Sbjct: 212 --------LAKRQPLPFAPAIAAGSILAY 232 >gi|323495635|ref|ZP_08100706.1| type IV leader peptidase [Vibrio sinaloensis DSM 21326] gi|323319270|gb|EGA72210.1| type IV leader peptidase [Vibrio sinaloensis DSM 21326] Length = 134 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 17/136 (12%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82 +DL ++ N+ +++ G + FL +HL+ +V I C + + G Sbjct: 9 GWNDLQHRVVKNKSVLLLAGILAFSIFLF-----DSKIHLIQASLVLISGMCLWKVGVFG 63 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142 GD+KL + A++ S L LF + ++GG+ ++ L +R H+ + Sbjct: 64 AGDIKLASVFAIFIAPDYSLL-VLFLMLVIGGVEALLYLLIRTTYPHL-----------I 111 Query: 143 MKNKIPYGIAISMGGL 158 IP+ I I + G Sbjct: 112 RHGGIPFAIPIVISGF 127 >gi|126438727|ref|YP_001058804.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668] gi|126218220|gb|ABN81726.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668] Length = 166 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 2/125 (1%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIICFCFFAFNIMGGG 84 D IPN + +V L + ++ + LVG V + F FFA +MG Sbjct: 21 DCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALVGGAVGLVSLFPFFALRVMGAA 80 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVK+ W G P+ +I G+ ++ ++ + G + + Sbjct: 81 DVKVFAVLGAWCGL-PALPRLWVVASIAAGVHALALMLLTRTPPGSLGRGGAPAFALGAR 139 Query: 145 NKIPY 149 PY Sbjct: 140 RAAPY 144 >gi|84501668|ref|ZP_00999840.1| hypothetical protein OB2597_15740 [Oceanicola batsensis HTCC2597] gi|84390289|gb|EAQ02848.1| hypothetical protein OB2597_15740 [Oceanicola batsensis HTCC2597] Length = 163 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 6/151 (3%) Query: 7 VFSAVFLIPPFCL-VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 V + +FL + ++ + +DL IPN + + F++ + + +E+ L+ Sbjct: 7 VAARLFLPFVLLIGLYVSWTDLKGMRIPNASVVTLALVFVVLGPFV-LPFEIYGWRLVHL 65 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 ++V ++ F +MG GD K L + A + L F+ A + + T R Sbjct: 66 VVVLVLGFALTVAGVMGAGDAKFLAAAAPYVALVDLRLMFMLLAATMLAAFA----THRA 121 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156 + +S+ P G A+S Sbjct: 122 AKHTALRRLAPDWESWERSRDFPMGTALSTA 152 >gi|149188866|ref|ZP_01867156.1| hypothetical protein VSAK1_05935 [Vibrio shilonii AK1] gi|148837286|gb|EDL54233.1| hypothetical protein VSAK1_05935 [Vibrio shilonii AK1] Length = 141 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 20/157 (12%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 L+ F + A+ D I N + +V+L + + + L+V Sbjct: 2 YLLVLMFVCLVIAIVDFLYRKIHNYMLLVLLLVQCFLSPSD--------IQITTFLLVLG 53 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 I ++ +G GD+K ++ +++ +GGI+++ Sbjct: 54 IGLLVYSLIWIGAGDIKYAAILSLAIPLDYLPWAYII-TGFVGGIIAM----------TY 102 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGG-LISYPDSYL 166 I + + + IPYGIAIS+G L+ + S L Sbjct: 103 WISKKILGNKYHKQEGIPYGIAISVGFYLVIFTQSAL 139 >gi|28900573|ref|NP_800228.1| hypothetical protein VPA0718 [Vibrio parahaemolyticus RIMD 2210633] gi|28808953|dbj|BAC62061.1| putative membrane protein [Vibrio parahaemolyticus RIMD 2210633] Length = 147 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 16/138 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 D+ ++ +R +++ + LL+ F L V VFI F + NI+GG Sbjct: 21 YGDIRYRIVKHRFLLIIFITSLLSLFFT----PEPLTQLAVSTSVFICFFILWLINIVGG 76 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GDVKL+ + L+ + + +LGGI + + + + P Sbjct: 77 GDVKLIGVLFLGVN-DEYMLAAIVAIGLLGGIQILVMWLMSVYRKKTPF----------- 124 Query: 144 KNKIPYGIAISMGGLISY 161 +N IPY I I + GL + Sbjct: 125 ENGIPYTIPIGISGLFFF 142 >gi|218660281|ref|ZP_03516211.1| putative cpaA pilus assembly protein [Rhizobium etli IE4771] Length = 171 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 12/158 (7%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL----------L 63 + ++AA +D + IPN + + ++ + L A + + E + L Sbjct: 11 LSVLLFLYAAWTDFRTWKIPNTIVLALVTLYALRAVAVMLGSEDVGAALFASSGIGGDVG 70 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 GL++F++ + F + G GD KL ++ GW L F F + +LG + + + Sbjct: 71 AGLLMFMLGVVLWVFRLFGAGDAKLFLPIGLFVGW-HGMLPFSFLLLVLGIVTLLVLRLP 129 Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + F M + + + IPYG+ + L++ Sbjct: 130 VPLRVAHFAFFMRIEEIRASRK-IPYGVLMVFAALLTL 166 >gi|78060317|ref|YP_366892.1| peptidase A24A, prepilin type IV [Burkholderia sp. 383] gi|77964867|gb|ABB06248.1| Peptidase A24A, prepilin type IV [Burkholderia sp. 383] Length = 180 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 17/162 (10%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L V AA +D+ + IPNR+ ++ L L++ +L + L F + Sbjct: 12 LCVTLLAVAAASTDIATRRIPNRLVLLGLAGALVSQCMLHGVLAGVLGWLAGAATGFALL 71 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F+ M GDVKL+ + W G +F + + GGI ++ +R + Sbjct: 72 LPFYLLRGMAAGDVKLMLAIGAWVGAEMTFY-IVLATFLAGGIGAIAYALLRGRMRQMWA 130 Query: 133 FGMFVPKSFLMK----------------NKIPYGIAISMGGL 158 + + +PYG+AI+ G L Sbjct: 131 NVRALIARRRSQGASDEAAGSPVEIASVGTLPYGVAIAAGTL 172 >gi|89098961|ref|ZP_01171841.1| signal peptidase (late competence protein) [Bacillus sp. NRRL B-14911] gi|89086365|gb|EAR65486.1| signal peptidase (late competence protein) [Bacillus sp. NRRL B-14911] Length = 247 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 16/144 (11%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 LV +SD+ +IP++V +V FLL + + + ++ + Sbjct: 105 LLVIVFVSDIKYMIIPDKVLLVFAVIFLLERIFIPLSPWWDSAAGAAAGFFLLLFIAVVS 164 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 MGGGD+KL + G L+F + G + L I Sbjct: 165 KGGMGGGDIKLFAVIGLALGTKLVLLTFFLAT-LFGAFFGIAGLLAGKIE---------- 213 Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161 IP+G I++G L +Y Sbjct: 214 -----KGKPIPFGPYIALGCLTAY 232 >gi|251767752|ref|ZP_04820240.1| peptidase A24A, prepilin type IV [Burkholderia mallei PRL-20] gi|254197207|ref|ZP_04903629.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13] gi|169653948|gb|EDS86641.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13] gi|243061825|gb|EES44011.1| peptidase A24A, prepilin type IV [Burkholderia mallei PRL-20] Length = 183 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL-IALHLLVGLIVFIICFCFFAFNIMGGG 84 D IPN + +V L + ++ + ++ L+ G + + F FFA +MG Sbjct: 38 DCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALIGGAVGLVSLFPFFALRVMGAA 97 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVK+ W G + + ++ G+ ++ ++ + G + + Sbjct: 98 DVKVFAVLGAWCGLS-ALPRLWVVASVAAGVHALALMLLTRTPPGSLGRGGAPAFALGAR 156 Query: 145 NKIPY 149 PY Sbjct: 157 RAAPY 161 >gi|15678449|ref|NP_275564.1| hypothetical protein MTH421 [Methanothermobacter thermautotrophicus str. Delta H] gi|3219875|sp|O26521|Y421_METTH RecName: Full=Uncharacterized protein MTH_421 gi|2621485|gb|AAB84927.1| unknown [Methanothermobacter thermautotrophicus str. Delta H] Length = 385 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 5/107 (4%) Query: 11 VFLIPPFCLV--FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG--- 65 + + L +A+ SD+ +IPNR++ ++G LL + + + Sbjct: 8 LLSVFIALLACFYASYSDIKRGIIPNRLTFPVIGLGLLLNGARALMESDPWIFIYTAIFT 67 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112 +F + + + GGDVKL T+ + PS +S+ F Sbjct: 68 AGIFALGYILWRMVAWAGGDVKLFTAVTSLLPFQPSLVSYSFLGTAF 114 >gi|317129791|ref|YP_004096073.1| prepilin peptidase [Bacillus cellulosilyticus DSM 2522] gi|315474739|gb|ADU31342.1| Prepilin peptidase [Bacillus cellulosilyticus DSM 2522] Length = 250 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 18/152 (11%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVF 69 + L L+ +SDL + +IP++V I+ L F++ + + + L VG V Sbjct: 102 IALAFISLLMIITVSDLKTMLIPDKVLIIFLVIFIVLRLVHPLTPWWDSLLGASVGFGVL 161 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 ++ + MGGGD+KL + G+ ++ LF + +G I+ L + + Sbjct: 162 LLLAIV-SKGGMGGGDIKLFGVIGIILGFYGVLVT-LFLASFIGAIVGGIGLVTKKVRRG 219 Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 P IP+G I++G +ISY Sbjct: 220 NP---------------IPFGPFIAVGAIISY 236 >gi|21227780|ref|NP_633702.1| hypothetical protein MM_1678 [Methanosarcina mazei Go1] gi|20906185|gb|AAM31374.1| conserved protein [Methanosarcina mazei Go1] Length = 258 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 8/144 (5%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS---FLLTAFLLGMDYELIALHL 62 M+ L L++ +DL + N+V ML S F++ G + + Sbjct: 5 MIEILKILFTMPFLLYGCYTDLKERRVSNKVWKYMLASGSVFVIYEVFTG-GLPYVKSLI 63 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG----GILSV 118 L +IVFI + F GGGD K L ++ F P FL +LG G+ + Sbjct: 64 LSSVIVFISIYILFQLGAFGGGDAKGLIVLSILFPLYPVFLFSGKVYPLLGLPPIGLFTF 123 Query: 119 FILTVRMITNHIPIFGMFVPKSFL 142 +L ++ + GMF Sbjct: 124 TVLENALLITVLVPLGMFFYNLLH 147 >gi|229543678|ref|ZP_04432738.1| Prepilin peptidase [Bacillus coagulans 36D1] gi|229328098|gb|EEN93773.1| Prepilin peptidase [Bacillus coagulans 36D1] Length = 253 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 16/149 (10%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ LV +SDL +IP++V + A V + Sbjct: 104 VLFISLLVIITVSDLAYMLIPDKVLFPFAAAIAAVRLFHPASPWWSAWLGAVFGFCLLYL 163 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 FF MGGGD+KL + G + + + Sbjct: 164 IAFFTKGAMGGGDIKLFFVIGLVLGIEK----------------TFLAFFLACFFGALYG 207 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161 G+ F + +P+G I++G L +Y Sbjct: 208 VGLMAAGKFKKRKPVPFGPFIAIGALAAY 236 >gi|121601550|ref|YP_993008.1| A24 family peptidase [Burkholderia mallei SAVP1] gi|124383373|ref|YP_001026340.1| putative fimbriae assembly-related protein [Burkholderia mallei NCTC 10229] gi|126449619|ref|YP_001080386.1| putative fimbriae assembly-related protein [Burkholderia mallei NCTC 10247] gi|134282195|ref|ZP_01768900.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305] gi|242314685|ref|ZP_04813701.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b] gi|254197642|ref|ZP_04904064.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13] gi|254358542|ref|ZP_04974815.1| putative fimbriae assembly-related protein [Burkholderia mallei 2002721280] gi|121230360|gb|ABM52878.1| peptidase, A24 (type IV prepilin peptidase) family [Burkholderia mallei SAVP1] gi|124291393|gb|ABN00662.1| putative fimbriae assembly-related protein [Burkholderia mallei NCTC 10229] gi|126242489|gb|ABO05582.1| putative fimbriae assembly-related protein [Burkholderia mallei NCTC 10247] gi|134246233|gb|EBA46322.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305] gi|148027669|gb|EDK85690.1| putative fimbriae assembly-related protein [Burkholderia mallei 2002721280] gi|169654383|gb|EDS87076.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13] gi|242137924|gb|EES24326.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b] Length = 159 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 9/148 (6%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ + L AL+DL + + ++ + A + A H +G F + Sbjct: 7 LVASWTLASLALADLRTRRLATFAVALVGALYAALALVGAPGDGGFASHAALGAAAFALG 66 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F + GGDVKL +W G + + VA G+ + + V + P Sbjct: 67 AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRAPR 121 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + F +PYG+A++ GGL++ Sbjct: 122 VLAW----FAPARGVPYGVALAAGGLLA 145 >gi|187926424|ref|YP_001892769.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12J] gi|241665911|ref|YP_002984270.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12D] gi|187728178|gb|ACD29342.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12J] gi|240867938|gb|ACS65598.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12D] Length = 183 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 12/163 (7%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLV 64 + A ++ V A D+ +PN + + + G+ L Sbjct: 5 IDIAGWVSVAVLAVLAIALDIRLRRVPNWLVAAGVVLSIALIKFGGVQDLAYDWQDFWLG 64 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 G I F + MG GDVK T + GW ++ +++ G+ ++ I+ +R Sbjct: 65 GAIAFACFLPLYTLGWMGAGDVKFFTVVGLLAGW-HGLVAVWLVSSMISGLHALGIVVLR 123 Query: 125 MITNHIPIFGM---------FVPKSFLMKNKIPYGIAISMGGL 158 + P + + IPY +++G L Sbjct: 124 QLDASSPSAWIVMRVCPAIARWDIAHAGLRGIPYAAYMAIGLL 166 >gi|315649133|ref|ZP_07902224.1| peptidase A24A prepilin type IV [Paenibacillus vortex V453] gi|315275449|gb|EFU38806.1| peptidase A24A prepilin type IV [Paenibacillus vortex V453] Length = 170 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 5/142 (3%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLI 67 + + + L+ A L+DL S IPN +++ ML + L G +E + L Sbjct: 2 AVAYGLCAVYLITAFLTDLRSMKIPNALTVPAMLLGPVYHGILDG--WEGMFFSLKGLGA 59 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 F+I + +G GDVKL W G + L + + + G++ + IL R T Sbjct: 60 GFLILLIMYFIGAVGAGDVKLFGGIGAWTGLWFT-LHAIMYSVLCAGVVGLIILLWRRET 118 Query: 128 -NHIPIFGMFVPKSFLMKNKIP 148 I + F++K+ +P Sbjct: 119 MKRIRKVVGSIAGVFILKSGLP 140 >gi|209696040|ref|YP_002263970.1| type IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD) (leader peptidase PilD) [Aliivibrio salmonicida LFI1238] gi|208009993|emb|CAQ80316.1| type IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD) (leader peptidase PilD) [Aliivibrio salmonicida LFI1238] Length = 295 Score = 48.0 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 F+ ++ L+ D+ + ++P+++++ +L + L + + L+ + Sbjct: 133 FAIAAVLFTLTLIALTFIDIDTMLLPDQITLPLLWTGLYLSLVGWSSVSLMDSVIGAMAG 192 Query: 68 VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 I+ ++AF + MG GD KLL + W GW L + +I+G I+ + +L Sbjct: 193 YLILWSIYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-IVLLSSIVGAIIGIAML 251 >gi|260893560|ref|YP_003239657.1| peptidase A24A domain protein [Ammonifex degensii KC4] gi|260865701|gb|ACX52807.1| peptidase A24A domain protein [Ammonifex degensii KC4] Length = 250 Score = 48.0 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 16/145 (11%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 CL+ A+ DL +IPNR+ +V + L L AL F++ Sbjct: 106 ACLLVASFIDLEHCLIPNRLVLVAFLGGVPLGLLARDVGLLSALLGAGAAGGFLLLLALA 165 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 + MGGGD+KL T ++ GW S L + G I + +L R Sbjct: 166 SRGGMGGGDIKLATVAGLFLGWPLSLLGTFLGCFVAG-IWGIVLLLTRRKGR-------- 216 Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161 K+ IP+G +S+G LI+ Sbjct: 217 -------KDHIPFGPFLSLGFLIAL 234 >gi|295399387|ref|ZP_06809369.1| peptidase A24A domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978853|gb|EFG54449.1| peptidase A24A domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 254 Score = 48.0 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 16/144 (11%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 L+ +SD+ MIP++V +V FL + AL + + + Sbjct: 111 LLMIIFVSDVRYMMIPDKVLLVFAIIFLFERLFIPFLSWRDALIGAAAGFLLLFLIAVIS 170 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 MGGGD+KL GW L+F F I G + + + + + P Sbjct: 171 KGGMGGGDIKLFALLGFVLGWKTVLLAFFFST-IYGTAIGLIGMALGKVRRREP------ 223 Query: 138 PKSFLMKNKIPYGIAISMGGLISY 161 +P+G AI +G L +Y Sbjct: 224 ---------MPFGPAIVLGSLTAY 238 >gi|126443602|ref|YP_001064073.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668] gi|217424146|ref|ZP_03455645.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576] gi|237508476|ref|ZP_04521191.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei MSHR346] gi|126223093|gb|ABN86598.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 668] gi|217392611|gb|EEC32634.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576] gi|235000681|gb|EEP50105.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei MSHR346] Length = 204 Score = 48.0 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 16/161 (9%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L V AA DL S IPNR+ + L L+ L + A L + Sbjct: 37 LCVTLLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAGLL 96 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP- 131 F+ M GDVKL+ + W G T + L ++GG ++ ++ R + Sbjct: 97 LPFYLVRGMAAGDVKLMLAIGAWVGPTLA-LHIALATFVVGGAWALAVVARRGRFRKLLA 155 Query: 132 --------------IFGMFVPKSFLMKNKIPYGIAISMGGL 158 +PYG+AI++G L Sbjct: 156 NLRHLFAGAALLRVASAARAAPEIDSVGMLPYGVAIAIGTL 196 >gi|53719512|ref|YP_108498.1| hypothetical protein BPSL1898 [Burkholderia pseudomallei K96243] gi|76810644|ref|YP_333337.1| hypothetical protein BURPS1710b_1938 [Burkholderia pseudomallei 1710b] gi|254179960|ref|ZP_04886559.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655] gi|254188630|ref|ZP_04895141.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur 52237] gi|254260547|ref|ZP_04951601.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a] gi|52209926|emb|CAH35898.1| family A24A unassigned peptidase [Burkholderia pseudomallei K96243] gi|76580097|gb|ABA49572.1| family A24A unassigned peptidase [Burkholderia pseudomallei 1710b] gi|157936309|gb|EDO91979.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur 52237] gi|184210500|gb|EDU07543.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655] gi|254219236|gb|EET08620.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a] Length = 166 Score = 48.0 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 2/125 (1%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIICFCFFAFNIMGGG 84 D IPN + +V L + ++ + L+G V + F FFA +MG Sbjct: 21 DCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALIGGAVGLVSLFPFFALRVMGAA 80 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVK+ W G P+ ++ G+ ++ ++ + G + + Sbjct: 81 DVKVFAVLGAWCGL-PALPRLWVVASVAAGVHALALMLLTRTPPGSLGRGGAPAFALGAR 139 Query: 145 NKIPY 149 PY Sbjct: 140 RAAPY 144 >gi|328952517|ref|YP_004369851.1| peptidase A24A prepilin type IV [Desulfobacca acetoxidans DSM 11109] gi|328452841|gb|AEB08670.1| peptidase A24A prepilin type IV [Desulfobacca acetoxidans DSM 11109] Length = 168 Score = 48.0 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 1/100 (1%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 +DL IPN +++ + L ++ E + + L ++ + FFA MGG Sbjct: 17 YTDLRWRRIPNVLTVSGALAGLALNMIILGPTEGLRIACLGLVVGLALLLPFFALGGMGG 76 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 GDVKLL + W G + + A+ GGI S+ +L + Sbjct: 77 GDVKLLAALGAWVGPG-RVFNIFLYAALAGGIASIIMLAL 115 >gi|148556402|ref|YP_001263984.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1] gi|148501592|gb|ABQ69846.1| peptidase A24A, prepilin type IV [Sphingomonas wittichii RW1] Length = 151 Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 2/113 (1%) Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY-ELIALHLLVGLIVFIICFCFFAFNI 80 A+ DL S IPNR+ +++ D + +V + I FA Sbjct: 19 CAVVDLRSRTIPNRLVVLVALLAAPYWLAAAPDLLGRVIGQAVVIAVALPILLLLFAIRA 78 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 GGGDVKL + +W + L +A+ G +L++ IL + Sbjct: 79 WGGGDVKLSAALLLWLPGKEA-LEAAAIMAVTGAVLALLILPFGRRATARGVP 130 >gi|156975736|ref|YP_001446643.1| Type II secretory pathway, prepilin signal peptidase PulO [Vibrio harveyi ATCC BAA-1116] gi|156527330|gb|ABU72416.1| hypothetical protein VIBHAR_03471 [Vibrio harveyi ATCC BAA-1116] Length = 289 Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM--LGSFLLTAFLLGMDYELIALHLLVG 65 F+ + F L+ A DL + ++P+++++ + G L A + + + + + G Sbjct: 129 FTVALVFFTFVLIAATFIDLDTMLLPDQLTLPLMWAGIALALAGISPVSLQDSIIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW S + +++G I + L Sbjct: 189 YLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|118579238|ref|YP_900488.1| prepilin peptidase [Pelobacter propionicus DSM 2379] gi|118501948|gb|ABK98430.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Pelobacter propionicus DSM 2379] Length = 255 Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 22/157 (14%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65 F+A+FL LV + DL +IPN++S+ ++ F+L+ FL + L +L G Sbjct: 101 TFAALFLFCSALLVITCI-DLEYRVIPNKISLPGIVIGFVLSFFLPWPGWLNSLLGILAG 159 Query: 66 LIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 ++ C + MGGGD+KL+ + GW + F+ L G+L+ + Sbjct: 160 GGSLLLVACAYEWLTGREGMGGGDIKLVAMMGAFLGWE--AVPFIILAGSLAGLLAGGLP 217 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + + IP+G ++ G L Sbjct: 218 ML--------------IRRRDSGQAIPFGPYLAFGAL 240 >gi|149915634|ref|ZP_01904160.1| peptidase A24A, prepilin type IV [Roseobacter sp. AzwK-3b] gi|149810526|gb|EDM70369.1| peptidase A24A, prepilin type IV [Roseobacter sp. AzwK-3b] Length = 166 Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 6/149 (4%) Query: 7 VFSAVFLIPPF-CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 + +A FL V+ +DL S IPN I + FL+ + + + L+ Sbjct: 8 MQAAWFLPFVLPICVWVIWTDLSSMRIPNASVIALTCVFLVVGLFV-LPLQDYPWRLVNL 66 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +IV +I A IMG GD K L + A + F+ F A L +T R+ Sbjct: 67 VIVLLIGILLNAAGIMGAGDSKFLAAAAPFIDPGDVVPLFVIFSA----NLLACFVTHRL 122 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAIS 154 + S+ + K P G A+ Sbjct: 123 VMKSTLRQLAPDWISWSREGKFPMGFALG 151 >gi|326795296|ref|YP_004313116.1| prepilin peptidase [Marinomonas mediterranea MMB-1] gi|326546060|gb|ADZ91280.1| Prepilin peptidase [Marinomonas mediterranea MMB-1] Length = 256 Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 8/130 (6%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 + S + F+++FLI L AA+ D+ + IP+ S++++ S + L L Sbjct: 107 LTSSPLQFASLFLIF-LSLFIAAVIDIENKWIPDECSLMIIASSFVALLLNAQPLADNVL 165 Query: 61 HLLVGLIVFIICFCFFAFNI-----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115 L+ G + F + +G GD KLL + W G++ + + F A LG I Sbjct: 166 GLICGY-ALVYFLRLFYLHFRQIEAIGLGDAKLLAAIGAWLGFS-NLPYVIMFAASLGMI 223 Query: 116 LSVFILTVRM 125 ++ I R Sbjct: 224 GALIIRATRS 233 >gi|254483259|ref|ZP_05096491.1| peptidase, A24 (type IV prepilin peptidase) family [marine gamma proteobacterium HTCC2148] gi|214036482|gb|EEB77157.1| peptidase, A24 (type IV prepilin peptidase) family [marine gamma proteobacterium HTCC2148] Length = 178 Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 14/147 (9%) Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81 A + D IPN ++ L L A L + + HL+ I F F + Sbjct: 20 ATVMDFTRHRIPNYLTYPALVLGLCLAALS-WGWTGLGNHLIGTFAAGIPLFLIFLSGSL 78 Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR------------MITNH 129 GGGDVKL+ + G+ P+ L+ L ++GG+ + IL + + Sbjct: 79 GGGDVKLMAAVGAIVGF-PNALNALLASIMVGGLCAALILIWQGRLWGLVQYACSTLGYR 137 Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMG 156 I ++ P+G+AI++G Sbjct: 138 AGILSQAPQPPPAHRDSFPFGVAIAIG 164 >gi|327189764|gb|EGE56908.1| putative cpaA pilus assembly protein [Rhizobium etli CNPAF512] Length = 172 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 68/158 (43%), Gaps = 12/158 (7%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL----------L 63 I ++AA +D + IPN + + ++ + L A ++ E + L Sbjct: 11 ISVLLFLYAAWTDFRTWKIPNTIVLALVTLYALRAMVVIFGSEDVGAALFASSGIGGDVG 70 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 GL++F++ +AF + G GD KL ++ GW L F F + +LG + + + Sbjct: 71 AGLLMFMLGVVLWAFRLFGAGDAKLFLPIGLFVGW-HGMLPFSFLLLVLGVVTLLVLRLP 129 Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + F M + + + IPYG+ + L++ Sbjct: 130 VPLRVAHLAFFMRIGEIRASRK-IPYGVLMVFAALLTL 166 >gi|317154607|ref|YP_004122655.1| peptidase A24A prepilin type IV [Desulfovibrio aespoeensis Aspo-2] gi|316944858|gb|ADU63909.1| peptidase A24A prepilin type IV [Desulfovibrio aespoeensis Aspo-2] Length = 181 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 17/162 (10%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L A ++D+ I N ++ ++ S L A L + + L + + Sbjct: 8 MLVAALAVATVTDIRRQRIYNWLTFPLILS-GLAAHTLHAGLDGLLLSSGGFALGLGVMV 66 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 F +MG GDVKL+ W G +F +FLF + GG +V +L + Sbjct: 67 VPFFLGLMGAGDVKLMAGVGAWLGAQAAFTAFLF-TCLAGGFYAVVVLARHFDQFKAVLV 125 Query: 134 GMFVPKSFLMKN---------------KIPYGIAISMGGLIS 160 ++ ++ YG+AI++G + + Sbjct: 126 NIWATFLLAASTRRFEYTPVVEAQSMPRLCYGVAIAVGTVAA 167 >gi|54310291|ref|YP_131311.1| putative leader peptidase PilD [Photobacterium profundum SS9] gi|46914732|emb|CAG21509.1| putative leader peptidase PilD [Photobacterium profundum SS9] Length = 299 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 59/131 (45%), Gaps = 9/131 (6%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 + + F L+ D+ + ++P+++++ ++ + + A L+G+ + ++ ++ Sbjct: 140 AVAVIFFSFALIALTFIDIDTMLLPDQITLPLMWA-GIAAALVGLSPVSLQDAIIGAMVG 198 Query: 69 FIICFCFFAF-------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 ++ + F MG GD KLL + W GW S + +++G + + +L Sbjct: 199 YLSLWSLFWSFKLITGKEGMGYGDFKLLAALGAWLGW-QSLPFVVLLSSLVGAVCGIILL 257 Query: 122 TVRMITNHIPI 132 V+ + P Sbjct: 258 RVQRSDSQTPF 268 >gi|225174963|ref|ZP_03728960.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1] gi|225169603|gb|EEG78400.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1] Length = 193 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 33/178 (18%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 + + AA D+ IPN+++ +M+ ++ FL G+ IA L + Sbjct: 4 VLILFVALAAYFDVRQRRIPNKITFPIMIVGLVIYGFLEGLP--GIAFGFTGLLSGLFVF 61 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS--------------- 117 F FA MG GDVK+ + G L F GGI++ Sbjct: 62 FIPFALGGMGAGDVKMTAAVGALMGM-QFVLHSAIFTIFAGGIMAIGYLIAHKRLLSGLK 120 Query: 118 ----------VFILTVRMITNHIPIFGMFVPKSFLMKNK----IPYGIAISMGGLISY 161 + +L +R I F ++ S + K + +PYG+AI+ G +++ Sbjct: 121 NVVGMIARPLLAMLAIRFRNPLINRFSVYFTPSPVEKKEEAIYLPYGVAIAAGAVLTL 178 >gi|226196296|ref|ZP_03791878.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pakistan 9] gi|254188720|ref|ZP_04895231.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur 52237] gi|157936399|gb|EDO92069.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur 52237] gi|225931513|gb|EEH27518.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pakistan 9] Length = 159 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 9/148 (6%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ + L AL+DL + + ++ + A A H +G F + Sbjct: 7 LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALG 66 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F + GGDVKL +W G + + VA G+ + + V + +P Sbjct: 67 AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRVPR 121 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + F +PYG+A++ GGL++ Sbjct: 122 VLAW----FAPARGVPYGVALAAGGLLA 145 >gi|253576548|ref|ZP_04853876.1| peptidase A24A prepilin type IV [Paenibacillus sp. oral taxon 786 str. D14] gi|251843962|gb|EES71982.1| peptidase A24A prepilin type IV [Paenibacillus sp. oral taxon 786 str. D14] Length = 167 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 1/132 (0%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+ A ++DL + IPN +++ + + L L ++ F + F + Sbjct: 9 LMLLAAFVTDLRTMKIPNVITVTGIFTGLSYHLLTD-GWKGAWFSAAGAATGFGLMFALY 67 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 +GGGDVKL W G + + ++ + G I + ++ R + + Sbjct: 68 LLRAVGGGDVKLFAGIGAWTGIALTLSTMMYSILAAGCIGLILLIWRRETGHRLRRIAGS 127 Query: 137 VPKSFLMKNKIP 148 + + ++++ P Sbjct: 128 LLGAAMLRSPAP 139 >gi|238917901|ref|YP_002931418.1| hypothetical protein EUBELI_01988 [Eubacterium eligens ATCC 27750] gi|238873261|gb|ACR72971.1| Hypothetical protein EUBELI_01988 [Eubacterium eligens ATCC 27750] Length = 156 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 7/155 (4%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 I +V+A D+ + IPNR+ I + ++ + G E I H+ L+ Sbjct: 9 IALILIVWAVSEDVKAFRIPNRLIIAGYIAGVIMLVIRGFSGEHIGNHITGTLVGLSEML 68 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 F+ +G GDVKL + G T L + GGI V L ++ Sbjct: 69 IFYIIKAVGAGDVKLFAVLGLLLGKT-LITQLLIVSLVTGGITGVVELCIKKT------G 121 Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168 + + S + + Y +AI M ++ + ++ Sbjct: 122 RVELGMSHVQMHGFHYAVAILMAYVVVFGYRFVVM 156 >gi|295700372|ref|YP_003608265.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1002] gi|295439585|gb|ADG18754.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1002] Length = 180 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 16/157 (10%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 + AA +DL + IPNR+ ++ L L + L F + F+ Sbjct: 17 VLAIVAASTDLTARRIPNRLIVLGLSVALAVQMSIHGPLAGALDWLSGAACGFALLMPFY 76 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT-----------VRM 125 M GDVKLL W G ++GG+ S+ I+ +R Sbjct: 77 LLRGMAAGDVKLLMMIGAWVGPA-LTWRIALATFLIGGLWSLLIVLCRGRFARLLANLRQ 135 Query: 126 ITNHIPIFGMFVPKSFLMKNK----IPYGIAISMGGL 158 + + + + P ++ IPYG+AI+ G L Sbjct: 136 LIGGLAVAPLRRPSLIDARSGSVGSIPYGVAIAAGTL 172 >gi|51246869|ref|YP_066753.1| type IV prepilin leader peptidase [Desulfotalea psychrophila LSv54] gi|50877906|emb|CAG37746.1| related to type IV prepilin leader peptidase [Desulfotalea psychrophila LSv54] Length = 263 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 21/155 (13%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 + L+ + D + +IP+ +S+ + FL + + + + LLVG Sbjct: 104 LAYFCFSAALLVIIVIDFYHQIIPDLISLPGIALGFLFSFINPEISWLSSLIGLLVGGGA 163 Query: 69 F-IICFCFFAFN---IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 I + +F MGGGD+KLL W GW S + +F ++ G I+ + L ++ Sbjct: 164 LYAIAWGYFTLRKQEGMGGGDIKLLAMLGAWLGW-QSLVFIVFTSSLFGAIIGLIALRIQ 222 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 N + KIP+G + + L+ Sbjct: 223 NKGN---------------QTKIPFGPFLCLAALV 242 >gi|327398770|ref|YP_004339639.1| Prepilin peptidase [Hippea maritima DSM 10411] gi|327181399|gb|AEA33580.1| Prepilin peptidase [Hippea maritima DSM 10411] Length = 256 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 4/120 (3%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + +L+ + L+ A+ DL +IP+R+S+ ++ L+ ++ G + L Sbjct: 102 LDGVFYLVFVYSLIVASFVDLKHYIIPDRISLGLIAVGLVFGYIRGDFLGSLYGFLAGFF 161 Query: 67 IVFIICFC---FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 ++I+ F MGGGD+KLL + G S LF ++ G + + ++ Sbjct: 162 GLYIMAIIGSWVFKKEAMGGGDIKLLGGIGAFLGIKGVLFS-LFSASLFGSFVGIALILF 220 >gi|258515846|ref|YP_003192068.1| peptidase A24A domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257779551|gb|ACV63445.1| peptidase A24A domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 248 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 1/108 (0%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 I LV AA DL +IP++V + L + FL + L + ++ Sbjct: 103 IFLSALVVAAFIDLEHGIIPDQVVVAALVLGVPVLFLASPYKLISGLTGFAAAGIIMLVI 162 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 A MGGGDVKL ++ GW P+ L+ LF + GG++ + +L Sbjct: 163 ALLAPGGMGGGDVKLSAVIGLYLGW-PNVLAGLFLAFLSGGLVGIVLL 209 >gi|269961263|ref|ZP_06175630.1| leader peptidase PilD [Vibrio harveyi 1DA3] gi|269834024|gb|EEZ88116.1| leader peptidase PilD [Vibrio harveyi 1DA3] Length = 289 Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65 F+ + F L+ A DL + ++P+++++ ++ + + A + + + + + G Sbjct: 129 FTVALVFFTFVLIAATFIDLDTMLLPDQLTLPLMWAGIALALSGISPVSLQDSIIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW S + +++G I + L Sbjct: 189 YLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|86147182|ref|ZP_01065498.1| hypothetical protein MED222_18936 [Vibrio sp. MED222] gi|85835066|gb|EAQ53208.1| hypothetical protein MED222_18936 [Vibrio sp. MED222] Length = 145 Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 16/148 (10%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 + + D+ +IPN V + + + + IV + Sbjct: 8 LIPLATMAAIVSYQDIRYRIIPNGVVVAVALLGVFY-----ICQTEKFEQFYNFFIVLAV 62 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 F FN++ GD KLL + ++ L+ + + GG L++ Sbjct: 63 GAVLFYFNVIAAGDSKLLAAFSLMVSPNMMLLA-VNVILFAGGTLAI----------TQW 111 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLI 159 + G S +PYG+ I +G L+ Sbjct: 112 VLGKTTGNSEWTNRGVPYGVPICLGSLL 139 >gi|325518462|gb|EGC98161.1| prepilin peptidase [Burkholderia sp. TJI49] Length = 165 Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 8/155 (5%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 I F + D+ I N + L + + + L+G V +I F Sbjct: 9 IFLVWASFVGIGDVRFRRIQNSLVFAGLIGAFVCGAVNENPFGTSITQALIGASVGLIGF 68 Query: 74 C-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 FF +MG DVK+ W G + L F +I G+ +++++ + + Sbjct: 69 SPFFVLRLMGAADVKVFAVLGAWCG-GQALLWFWVVASIAAGLHALWLMLLSRTSIAALC 127 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167 + + PYG + P + Sbjct: 128 RRGTPAMALGGRRATPYG------AFLVLPAAVWL 156 >gi|167748315|ref|ZP_02420442.1| hypothetical protein ANACAC_03059 [Anaerostipes caccae DSM 14662] gi|167652307|gb|EDR96436.1| hypothetical protein ANACAC_03059 [Anaerostipes caccae DSM 14662] Length = 165 Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 6/138 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ F L A + D + IPN L G + I L L ++ Sbjct: 1 MVLLFYLTAAVIWDFTTFRIPNYFIFFGLILGASLLPFRGYGIQEILLGCLCPVVFL--- 57 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF-ILTVRMITNHIP 131 + F G GD+KL T ++ G +L + F A GG+LS+F +L+ R + + Sbjct: 58 YPLFCMGAFGAGDIKLFAVTGLFLGGLNIYLVAVSFAA--GGVLSLFQMLSDRSLIPRLV 115 Query: 132 IFGMFVPKSFLMKNKIPY 149 F ++ + + Y Sbjct: 116 CFYSYLAGCIHERKFMTY 133 >gi|94309595|ref|YP_582805.1| peptidase A24A, prepilin type IV [Cupriavidus metallidurans CH34] gi|93353447|gb|ABF07536.1| flp pilus assembly leader peptidase CpaA [Cupriavidus metallidurans CH34] Length = 167 Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 4/161 (2%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M + + I ++ AA +DL IPN ++ L + + Sbjct: 1 MTTIPTLSPYIGPIVIAVVLTAAATDLQRRRIPNWLTFGAWLVALPVQMTIHGLAAGAST 60 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 L L I + M GDVKL+ + W G + + ++GG+ ++ + Sbjct: 61 WALGWLTGLGIFLPIYLLRGMAAGDVKLMAAVGAWLGASLAASI-ALASFVIGGVWALTL 119 Query: 121 LTV---RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + + +PYG+AI+ G L Sbjct: 120 VLASGKGRQVVRNLGGIALTGQGGASVGSLPYGVAIAAGTL 160 >gi|163814846|ref|ZP_02206234.1| hypothetical protein COPEUT_00996 [Coprococcus eutactus ATCC 27759] gi|158449785|gb|EDP26780.1| hypothetical protein COPEUT_00996 [Coprococcus eutactus ATCC 27759] Length = 169 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 4/113 (3%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 + + A ++D S IPN++ V ++ F+++A + G+ E + +I Sbjct: 16 FLIPLIATVSMAVVTDFRSWKIPNKLVAVGLIQGFVVSAVVRGLP-EGLLSSAKGCVIPV 74 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 +I + F +G GD+KLL + G + + + GG++S+ L Sbjct: 75 VILYVLFLIKALGAGDIKLLAVAGSFVGLD--IYRVMIYSFLAGGVISIIYLL 125 >gi|84387248|ref|ZP_00990269.1| hypothetical protein V12B01_22501 [Vibrio splendidus 12B01] gi|84377895|gb|EAP94757.1| hypothetical protein V12B01_22501 [Vibrio splendidus 12B01] Length = 179 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 59/135 (43%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L+ ++ D+ IPN++ I+ L + L+ F +++ + + ++ F Sbjct: 10 VFWALLIAVSVYDVEKHRIPNKILILFLFVYFLSMFNRNYSFDVFLMSFVGFVVFFCFGL 69 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 + M GDVKLL ++ GW + F + G I + ++L +N++ I Sbjct: 70 LLYFLRAMSAGDVKLLGIVGMYLGWGQLLGASYFILLSAGVIGTFYLLYNFSNSNNLSIR 129 Query: 134 GMFVPKSFLMKNKIP 148 G F K ++ P Sbjct: 130 GYFENKLIVLGGVAP 144 >gi|251795279|ref|YP_003010010.1| peptidase A24A prepilin type IV [Paenibacillus sp. JDR-2] gi|247542905|gb|ACS99923.1| peptidase A24A prepilin type IV [Paenibacillus sp. JDR-2] Length = 171 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 2/112 (1%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 +DL S IPN +++ L + A G + L + F+ +G Sbjct: 17 YTDLKSMTIPNLLTVPFLAGGFVYALFSG-GGHGLLLAIYGAAAGFVPLLILHLAKGIGA 75 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 GDVKL + W G T + L + + + G++ + +L GM Sbjct: 76 GDVKLFAALGAWIG-TLAVLQLMMYAILYAGLVGLVLLVFHRPFARKMTAGM 126 >gi|167624208|ref|YP_001674502.1| peptidase A24A prepilin type IV [Shewanella halifaxensis HAW-EB4] gi|167354230|gb|ABZ76843.1| peptidase A24A prepilin type IV [Shewanella halifaxensis HAW-EB4] Length = 188 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 18/162 (11%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 +I + A + DL IPN + + + FL+ + + + + + + FII Sbjct: 11 VIAGVFFILAIVVDLTREKIPNWLCLFAIFCGFLVNGYFAHLS--GLMISFIGFSLAFII 68 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV-------- 123 F F F I+G GD+KL+ G P L++ I+ G ++ +L + Sbjct: 69 LFPTFIFKILGAGDIKLMMGIGALMG--PQLLAWSIAYGIIAGAVTSILLIIWKSGFSGC 126 Query: 124 -----RMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 R + ++PY A+++G + + Sbjct: 127 IKTFKRYWDCFYLRTYFKPEEGEAAGQRVPYAPALAIGWVWA 168 >gi|325525575|gb|EGD03365.1| peptidase A24A prepilin type IV [Burkholderia sp. TJI49] Length = 168 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 14/156 (8%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 + AA +DL S IPNRV V L L+ L A L F + F+ Sbjct: 5 LLAIVAASTDLASRRIPNRVVAVGLAGALIAQCALHGVAAGTAGWLAGAATGFGLLLPFY 64 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG-GILSVFILTVRMITNHIPIFGM 135 M GDVKL+ + W G +F L + G G + I R+ + + Sbjct: 65 LLRGMAAGDVKLMLAVGAWVGPAMAFRIVLAAFVLGGIGAVGFAIAHGRLRQMAANVRAL 124 Query: 136 FVPKSFLMK-------------NKIPYGIAISMGGL 158 + + + +PYG+AI+ G L Sbjct: 125 IMRRPGRPRAATADGHGPFESVGTLPYGVAIAAGTL 160 >gi|37680965|ref|NP_935574.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio vulnificus YJ016] gi|37199715|dbj|BAC95545.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio vulnificus YJ016] Length = 306 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 146 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 205 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 206 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 264 Query: 122 TVRMI 126 ++ Sbjct: 265 RLQKQ 269 >gi|317472146|ref|ZP_07931478.1| type IV leader peptidase [Anaerostipes sp. 3_2_56FAA] gi|316900550|gb|EFV22532.1| type IV leader peptidase [Anaerostipes sp. 3_2_56FAA] Length = 165 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 5/110 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ F L A + D + IPN L G + I L L ++ Sbjct: 1 MVLLFYLTAAVIWDFTTFRIPNYFIFFGLILGASLLPFRGYGIQEILLGCLCPVVFL--- 57 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F G GD+KL T ++ G +L+ + F A GG+LS+F + Sbjct: 58 YPLFCMGAFGAGDIKLFAVTGLFLGGLNIYLAAVSFAA--GGVLSLFQML 105 >gi|315179151|gb|ADT86065.1| leader peptidase PilD [Vibrio furnissii NCTC 11218] Length = 289 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 12/154 (7%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML--GSFLLTAFLLGMDYELIALHLLVG 65 F+ L + L+ A D + ++P+++++ ++ G L A + + + + + G Sbjct: 129 FAVALLFFSYVLIAATFIDFDTMLLPDQLTLPLMWGGIALALAGISPITLQDAVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + + +++G + + L Sbjct: 189 YLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPI-IILMSSVVGLVFGLIQL 247 Query: 122 TV--RMITNHIPIFGMFVPKSFLMKNKIPYGIAI 153 + R I P +L YG AI Sbjct: 248 RLQKRGIDKAFPFGPYLAIAGWLSAL---YGQAI 278 >gi|99082194|ref|YP_614348.1| hypothetical protein TM1040_2354 [Ruegeria sp. TM1040] gi|99038474|gb|ABF65086.1| membrane protein; putative [Ruegeria sp. TM1040] Length = 165 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 5/149 (3%) Query: 8 FSAVFLIPPFCLVFA-ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + FL L + AL+DL S IPN + ++L L+ + LL Sbjct: 7 AALWFLPFVVPLCYVVALNDLRSMRIPNWTVDTLGLIYILLGLLVMPTWADYGWQLLHLP 66 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 + I + F+A ++G GD K + A + + + I L L R+ Sbjct: 67 VGIAIGYLFYASGLVGAGDAKFAGAAAPYVAFA----DLKLIMIIFAITLLSGFLAHRLA 122 Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISM 155 + +S+ K P G+ + Sbjct: 123 RHTPLRRLAPHWQSWNTGAKFPMGLCLGA 151 >gi|56421160|ref|YP_148478.1| signal peptidase [Geobacillus kaustophilus HTA426] gi|56381002|dbj|BAD76910.1| signal peptidase (late competence protein) [Geobacillus kaustophilus HTA426] Length = 248 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 3/117 (2%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIICFCFF 76 L +SDL +IP+RV +V G FL+ ++ + + + L VG + + Sbjct: 106 LLAIIVVSDLRYMLIPDRVLLVFAGLFLMERLVIPFLPWVDMLLGAAVGFSLLWLIAVL- 164 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 + MGGGDVKL GW L+F + G I+ + + + + P+ Sbjct: 165 SNGGMGGGDVKLFAVLGFVLGWKMVLLAFFLAT-LYGTIIGLIGMALGRVRRGKPMP 220 >gi|261402262|ref|YP_003246486.1| Peptidase A24A domain protein [Methanocaldococcus vulcanius M7] gi|261369255|gb|ACX72004.1| Peptidase A24A domain protein [Methanocaldococcus vulcanius M7] Length = 340 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 7/100 (7%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + AV++I L+ A+++D+ +IP++ I+M L+ + Y ++ ++ Sbjct: 3 LLDAVYIINFILLILASITDIKERIIPHKYVIIMAVLNLI------VGYHYFGINAVIAF 56 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106 I + MGGGDVKL T+ A F + SF+ ++ Sbjct: 57 FTTFILCLILSIG-MGGGDVKLFTALAPIFAYPDSFIFYV 95 >gi|73669011|ref|YP_305026.1| hypothetical protein Mbar_A1491 [Methanosarcina barkeri str. Fusaro] gi|72396173|gb|AAZ70446.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 254 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 4/100 (4%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRV---SIVMLGSFLLTAFLLGMDYELIALHL 62 M+ L L+++ SDL S + N+V + F+ L G + + Sbjct: 1 MIEILKILFSIPFLLYSCYSDLNSRRVSNKVWKYMLASGSGFVFYEILTG-GLSYLMPLI 59 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102 L G++VF + F GGGD K L ++ F P F Sbjct: 60 LSGVLVFTAVYLLFQVGAFGGGDAKGLIVLSILFPSYPVF 99 >gi|237812064|ref|YP_002896515.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei MSHR346] gi|237505467|gb|ACQ97785.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei MSHR346] Length = 166 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 2/125 (1%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIICFCFFAFNIMGGG 84 D IPN + +V L + ++ + L+G V + F FFA +MG Sbjct: 21 DCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALIGGAVGLVSLFPFFALRVMGAA 80 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVK+ W G + + +I G+ ++ ++ + G + + Sbjct: 81 DVKVFAVLGAWCGLS-ALPRLWVVASIAAGVHALALMLLTRTPPGSLGRGGAPAFALGAR 139 Query: 145 NKIPY 149 PY Sbjct: 140 RAAPY 144 >gi|167751238|ref|ZP_02423365.1| hypothetical protein EUBSIR_02224 [Eubacterium siraeum DSM 15702] gi|167655745|gb|EDR99874.1| hypothetical protein EUBSIR_02224 [Eubacterium siraeum DSM 15702] Length = 352 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62 MV + ++ L+ + D+ IP +I + L A H Sbjct: 107 SLPMVVA---IVFFSLLIVLSCIDIDHMEIPYWCTISIAV--LGIATFFTEPNMPWWEHF 161 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW 98 ++ + F MGGGDV+L+ ++ GW Sbjct: 162 AGAAVIAVPFAILALFGGMGGGDVQLMAASGFVLGW 197 >gi|172060492|ref|YP_001808144.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6] gi|171993009|gb|ACB63928.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6] Length = 165 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 8/149 (5%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC-FFAF 78 F A D+ I N + + L L+ A + + + LVG V ++CF FA Sbjct: 15 AFVAAGDIRFRRIRNSLVVAGLFGALVAAAIGRNPFGISLTQSLVGAAVGLVCFFPLFAL 74 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 +MG DVK+ W G L ++ ++ G+ ++ ++ + + Sbjct: 75 RVMGAADVKVFAVLGAWCGAPMLLLLWIVG-SLAAGVHALCVMLLSRTSVSALYKRATPT 133 Query: 139 KSFLMKNKIPYGIAISMGGLISYPDSYLF 167 + + PY + P + Sbjct: 134 MTLGGRRATPY------AAFLVIPAAVWL 156 >gi|329928977|ref|ZP_08282787.1| peptidase, A24 family [Paenibacillus sp. HGF5] gi|328937229|gb|EGG33656.1| peptidase, A24 family [Paenibacillus sp. HGF5] Length = 170 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 2/119 (1%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 + F I L+ A ++DL S IPN +++ + S + L +E + L Sbjct: 2 AVAFGICAVYLIAAFITDLRSMKIPNALTVSAMLSGPVYHGALD-GWEGLLFSLKGLGAG 60 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 F+I + +G GDVKL W G + + + + G + + IL R T Sbjct: 61 FLILLIMYFIGAVGAGDVKLFGGIGAWTGLWFTLQG-IMYSVLFAGAIGLLILLWRRET 118 >gi|239814524|ref|YP_002943434.1| peptidase A24A prepilin type IV [Variovorax paradoxus S110] gi|239801101|gb|ACS18168.1| peptidase A24A prepilin type IV [Variovorax paradoxus S110] Length = 194 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 57/157 (36%), Gaps = 17/157 (10%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIICFCF 75 LV AA+SD IPN ++ + ++ H L GL F I F Sbjct: 25 VLLVMAAVSDARFYRIPNWLTFGGMAFAIIYGAFAARTPMTGLQHALGGLGTGFAIMLPF 84 Query: 76 FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP---- 131 + IMG GDVKL+ + G + + LF G + R + + + Sbjct: 85 YVLGIMGAGDVKLMAMVGAFIGPYQTLEAILFTCIAGGFAAVAVAIHRRRLGHMLANVKD 144 Query: 132 ---------IFGMFVPKSFLMKNKI---PYGIAISMG 156 I G+ + + I PYGI I +G Sbjct: 145 AAQGIVVSGIAGVRPNGTIDTRQSIGKLPYGICICVG 181 >gi|89053480|ref|YP_508931.1| peptidase A24A, prepilin type IV [Jannaschia sp. CCS1] gi|88863029|gb|ABD53906.1| peptidase A24A prepilin type IV [Jannaschia sp. CCS1] Length = 167 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 7/143 (4%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79 ++ ALSDL IPN + + G FL+T + + L IV + F + Sbjct: 22 IWVALSDLRQMRIPNVAVLALTGGFLITGLFA-LPMDAYLWRLAALGIVLLAGFVITSLG 80 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139 ++G GD K + A + +LFF+A+ +L +T R + Sbjct: 81 LVGAGDSKFAAAMAPFIAPG----DYLFFLALFSLVLIGSWITHRSAGRVPAVRRATAHW 136 Query: 140 SFLMKNKI-PYGIAISMGGLISY 161 S + K+ P G+A++ G L+ Y Sbjct: 137 SSWEQGKLFPMGVALA-GALVIY 158 >gi|320101690|ref|YP_004177281.1| peptidase A24A prepilin type IV [Isosphaera pallida ATCC 43644] gi|319748972|gb|ADV60732.1| peptidase A24A prepilin type IV [Isosphaera pallida ATCC 43644] Length = 269 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 AV ++ ++ AA+ D + +PN ++ LG+ +L + + +L L F Sbjct: 17 AVLVVICAVMIEAAIIDGWKLKVPNWLTYNFLGAGILYWTVTS-GWAGFQFAMLGFLAGF 75 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 ++ + MG GDVKLL W GW + + F A++GGI++V ++ Sbjct: 76 VL-YPLCLVGGMGAGDVKLLFGIGAWTGWYATLVIFAL-CAVVGGIMAVIMMA 126 >gi|156977411|ref|YP_001448317.1| prepilin peptidase CpaA [Vibrio harveyi ATCC BAA-1116] gi|156529005|gb|ABU74090.1| hypothetical protein VIBHAR_06198 [Vibrio harveyi ATCC BAA-1116] Length = 112 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 11/101 (10%) Query: 60 LHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 + L L+V + +AF +G GD+K ++ S L +A +GG L+ Sbjct: 14 IQLTTFLVVLVGGLILYAFIWVGAGDIKYAAVLSLTIPLQDLLWS-LVMMAFVGGFLATA 72 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 L R V + K IPYGIAIS+G + Sbjct: 73 YLVNRK----------LVTNTANTKEGIPYGIAISVGFYLV 103 >gi|114764954|ref|ZP_01444127.1| hypothetical protein 1100011001318_R2601_09083 [Pelagibaca bermudensis HTCC2601] gi|114542666|gb|EAU45690.1| hypothetical protein R2601_09083 [Roseovarius sp. HTCC2601] Length = 165 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 6/142 (4%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + P CL + +D+ I N+ ++ +L + + + + + + + Sbjct: 16 VLPICL-YVCFTDMREMRITNQANLALLLVYAVVGVFV-LPLDAYLWRYAHFGVALVAGI 73 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 A +MG GD K + + A F +A+ + L R+ Sbjct: 74 ALNAGGVMGAGDAKFIAAAA----PFIHVGDLRFLMALGAAVTLAAFLAHRIAKMTPLRR 129 Query: 134 GMFVPKSFLMKNKIPYGIAISM 155 KS+ + P G+A+ Sbjct: 130 LAPDWKSWSSGKRFPMGVALGG 151 >gi|59712795|ref|YP_205571.1| type 4 prepilin peptidase PilD [Vibrio fischeri ES114] gi|59480896|gb|AAW86683.1| type 4 prepilin peptidase PilD [Vibrio fischeri ES114] gi|83338470|gb|ABC11895.1| PilD [Vibrio fischeri ES114] Length = 295 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 7/124 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 F+ ++ L+ D+ + ++P+++++ +L S L A + L+ + Sbjct: 133 FAVAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192 Query: 68 VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 I+ ++ F + MG GD KLL + W GW L + +++G I+ V +L Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-IILLSSVVGAIIGVIML 251 Query: 122 TVRM 125 T + Sbjct: 252 TAQK 255 >gi|260771243|ref|ZP_05880170.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio furnissii CIP 102972] gi|260613840|gb|EEX39032.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio furnissii CIP 102972] Length = 289 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 12/154 (7%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML--GSFLLTAFLLGMDYELIALHLLVG 65 F+ L + L+ A D + ++P+++++ ++ G L A + + + + G Sbjct: 129 FAVALLFFSYVLIAATFIDFDTMLLPDQLTLPLMWGGIALALAGISPITLHDAVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + + +++G + + L Sbjct: 189 YLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPI-IILMSSVVGLVFGLIQL 247 Query: 122 TV--RMITNHIPIFGMFVPKSFLMKNKIPYGIAI 153 + R I P +L YG AI Sbjct: 248 RLQKRGIDKAFPFGPYLAIAGWLSAL---YGQAI 278 >gi|261409005|ref|YP_003245246.1| peptidase A24A prepilin type IV [Paenibacillus sp. Y412MC10] gi|261285468|gb|ACX67439.1| peptidase A24A prepilin type IV [Paenibacillus sp. Y412MC10] Length = 170 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 1/140 (0%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 + F I L+ A ++DL S IPN +++ + S + L +E + L Sbjct: 2 AVAFGICAVYLIAAFITDLRSMKIPNALTVSAMLSGPVYHGALD-GWEGLLFSLKGLGAG 60 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 F+I + +G GDVKL W G + ++ V G I + +L R Sbjct: 61 FLILLIMYFIGAVGAGDVKLFGGIGAWTGLWFTLQGIMYSVLFAGAIGLLILLWRRETMK 120 Query: 129 HIPIFGMFVPKSFLMKNKIP 148 + + F+MK+ +P Sbjct: 121 RVRHVVESIAGVFVMKSWLP 140 >gi|149200855|ref|ZP_01877830.1| peptidase A24A, prepilin type IV [Roseovarius sp. TM1035] gi|149145188|gb|EDM33214.1| peptidase A24A, prepilin type IV [Roseovarius sp. TM1035] Length = 166 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 7/137 (5%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79 ++ ALSDL IPN + ++G FL+ + + A L ++ + A Sbjct: 22 IWVALSDLRRMKIPNTAVLTLVGIFLVIGLMT-LPLVDYAWRLSHLAVMLVAGIAMNAVR 80 Query: 80 IMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 +MG GD K + + A + + L+F+F +LG ++ R I Sbjct: 81 LMGAGDAKFIAAAAPFVALGDAATLAFIFAATLLGAFVT-----HRAIMYSPLRRLAPDW 135 Query: 139 KSFLMKNKIPYGIAISM 155 +S+ K P G A+ Sbjct: 136 QSWHAGKKFPMGFALGG 152 >gi|32477846|ref|NP_870840.1| signal peptide [Rhodopirellula baltica SH 1] gi|32448403|emb|CAD77918.1| hypothetical protein-signal peptide and transmembrane prediction [Rhodopirellula baltica SH 1] Length = 141 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 59/105 (56%), Gaps = 2/105 (1%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 LV+A+L DL + IP+ +S+++ ++++ L + ++ + L G++ +I F Sbjct: 12 LLVWASLHDLRTREIPDWISVLIGVVAIVSSLLGWLGLSIVWV-LAGGVVGLVIASALFR 70 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 F +GGGD KL+ + A+ G + LF +AI GG+LS+ + Sbjct: 71 FAKLGGGDGKLIIALAMLVGPVGILI-VLFGMAITGGVLSLIAML 114 >gi|327441707|dbj|BAK18072.1| type II secretory pathway, prepilin signal peptidase PulO [Solibacillus silvestris StLB046] Length = 250 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 18/153 (11%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIV 68 AV L+ LV +SD+ +IP+++ + L ++ L + + + +G + Sbjct: 101 AVALLFISLLVIINVSDIAYMLIPDKILLFFLPLLIVARILSPLDPWWDSIIGAAIGFSI 160 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 ++ + MGGGD+KL FL +LG ++ L + + Sbjct: 161 LLLIAVI-SKGGMGGGDIKL----------------FLLIGLVLGTFNTLLTLFLASVIG 203 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 I + + K +P+G +I++ +I Y Sbjct: 204 MIVGIIILKVRGKGRKTPVPFGPSIAIAAIIVY 236 >gi|323702111|ref|ZP_08113779.1| peptidase A24A prepilin type IV [Desulfotomaculum nigrificans DSM 574] gi|323532993|gb|EGB22864.1| peptidase A24A prepilin type IV [Desulfotomaculum nigrificans DSM 574] Length = 167 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 55/158 (34%), Gaps = 15/158 (9%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 + +DL I N V + L+ G + L L+ + F Sbjct: 9 AIVTICLYTDLRYRKIFNLVLLPAFLLALVFNLSTG-GIGGLLFSLTGALLGLSLLLIPF 67 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 MG GDVKLL W G + FL AI+GGI++ F L F +F Sbjct: 68 MLGGMGAGDVKLLAVIGAWQGPQFVWFCFL-CTAIVGGIIATFQLVRTGKLRPTFKFILF 126 Query: 137 VPKSFLMK-------------NKIPYGIAISMGGLISY 161 K PYG+AI+ G L +Y Sbjct: 127 TLVPGSPKVNAFGTLATAKVGEAFPYGVAIAAGTLATY 164 >gi|53723522|ref|YP_102956.1| peptidase [Burkholderia mallei ATCC 23344] gi|121599833|ref|YP_993101.1| putative peptidase [Burkholderia mallei SAVP1] gi|124383829|ref|YP_001026122.1| putative peptidase [Burkholderia mallei NCTC 10229] gi|126449329|ref|YP_001080606.1| peptidase A24A, prepilin type IV [Burkholderia mallei NCTC 10247] gi|126454569|ref|YP_001066055.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a] gi|134282228|ref|ZP_01768933.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305] gi|226199664|ref|ZP_03795217.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pakistan 9] gi|242316839|ref|ZP_04815855.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b] gi|254177457|ref|ZP_04884112.1| peptidase A24A, prepilin type IV [Burkholderia mallei ATCC 10399] gi|254199899|ref|ZP_04906265.1| peptidase A24A, prepilin type IV [Burkholderia mallei FMH] gi|254206231|ref|ZP_04912583.1| peptidase A24A, prepilin type IV [Burkholderia mallei JHU] gi|254297796|ref|ZP_04965249.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e] gi|254358352|ref|ZP_04974625.1| peptidase A24A, prepilin type IV [Burkholderia mallei 2002721280] gi|52426945|gb|AAU47538.1| peptidase, putative [Burkholderia mallei ATCC 23344] gi|121228643|gb|ABM51161.1| putative peptidase [Burkholderia mallei SAVP1] gi|124291849|gb|ABN01118.1| putative peptidase [Burkholderia mallei NCTC 10229] gi|126228211|gb|ABN91751.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a] gi|126242199|gb|ABO05292.1| peptidase A24A, prepilin type IV [Burkholderia mallei NCTC 10247] gi|134246266|gb|EBA46355.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305] gi|147749495|gb|EDK56569.1| peptidase A24A, prepilin type IV [Burkholderia mallei FMH] gi|147753674|gb|EDK60739.1| peptidase A24A, prepilin type IV [Burkholderia mallei JHU] gi|148027479|gb|EDK85500.1| peptidase A24A, prepilin type IV [Burkholderia mallei 2002721280] gi|157807103|gb|EDO84273.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e] gi|160698496|gb|EDP88466.1| peptidase A24A, prepilin type IV [Burkholderia mallei ATCC 10399] gi|225928250|gb|EEH24284.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pakistan 9] gi|242140078|gb|EES26480.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b] Length = 166 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 2/125 (1%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIICFCFFAFNIMGGG 84 D IPN + +V L + ++ + L+G V + F FFA +MG Sbjct: 21 DCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALIGGAVGLVSLFPFFALRVMGAA 80 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVK+ W G + + ++ G+ ++ ++ + G + + Sbjct: 81 DVKVFAVLGAWCGLS-ALPRLWVVASVAAGVHALALMLLTRTPPGSLGRGGAPAFALGAR 139 Query: 145 NKIPY 149 PY Sbjct: 140 RAAPY 144 >gi|291531694|emb|CBK97279.1| Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Eubacterium siraeum 70/3] Length = 352 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62 MV + ++ L+ + D+ IP +I + L A H Sbjct: 107 SLPMVVA---IVFFSLLIVLSCIDIDHMEIPYWCTISIAV--LGIATFFTEPNMPWWEHF 161 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW 98 ++ + F MGGGDV+L+ ++ GW Sbjct: 162 AGAAVIAVPFAILALFGGMGGGDVQLMAASGFVLGW 197 >gi|322418888|ref|YP_004198111.1| Prepilin peptidase [Geobacter sp. M18] gi|320125275|gb|ADW12835.1| Prepilin peptidase [Geobacter sp. M18] Length = 274 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 A+ + LV DL +IP+ +++ ++ F+L+ F+ + + + ++ G Sbjct: 119 AILFVFCSALVTITFIDLEHQIIPDVITLPGIVLGFILSFFIPQLGWLNSLIGIVGGGGS 178 Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 ++ + + MGGGDVKLL + GW + + +F ++LG ++ V ++ +R Sbjct: 179 LLLIAWLYQVVAKKDGMGGGDVKLLAMMGAFLGW-KAIIFIVFVSSLLGSVIGVTLMVIR 237 Query: 125 MITNHIPIF 133 + + I Sbjct: 238 KKDSTLAIP 246 >gi|261250240|ref|ZP_05942816.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio orientalis CIP 102891] gi|260939356|gb|EEX95342.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio orientalis CIP 102891] Length = 289 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 7/124 (5%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66 + + F L+ A DL + ++P+++++ + + + A + + + + + G Sbjct: 130 AICLIFFTFVLISATFIDLDTMLLPDQLTLPLTWTGIAIALIDISPVSLQDAVIGAIAGY 189 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + + + F MG GD KLL + W GW + +++G + + L Sbjct: 190 LALWVVYWAFKLTTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSLVGLVFGLIQLR 248 Query: 123 VRMI 126 ++ Sbjct: 249 LKRQ 252 >gi|83338373|gb|ABC11880.1| PilD [Aliivibrio fischeri] Length = 295 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 7/124 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 F+ ++ L+ D+ + ++P+++++ +L S L A + L+ + Sbjct: 133 FAIAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192 Query: 68 VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 I+ ++ F + MG GD KLL + W GW L + +++G I+ V +L Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-IILLSSVVGAIIGVIML 251 Query: 122 TVRM 125 T + Sbjct: 252 TAQK 255 >gi|254179874|ref|ZP_04886473.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655] gi|184210414|gb|EDU07457.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655] Length = 159 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 9/148 (6%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ + L AL+DL + + ++ + A A H +G F + Sbjct: 7 LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAAFALG 66 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F + GGDVKL +W G + + VA G+ + + V + P Sbjct: 67 AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRAPR 121 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + F +PYG+A++ GGL++ Sbjct: 122 VLAW----FAPARGVPYGVALAAGGLLA 145 >gi|291556753|emb|CBL33870.1| Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Eubacterium siraeum V10Sc8a] Length = 352 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62 MV + ++ L+ + D+ IP +I + L A H Sbjct: 107 SLPMVVA---IVFFSLLIVLSCIDIDHMEIPYWCTISIAV--LGIATFFTEPNMPWWEHF 161 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW 98 ++ + F MGGGDV+L+ ++ GW Sbjct: 162 AGAAVIAVPFAILALFGGMGGGDVQLMAASGFVLGW 197 >gi|289192798|ref|YP_003458739.1| Peptidase A24A domain protein [Methanocaldococcus sp. FS406-22] gi|288939248|gb|ADC70003.1| Peptidase A24A domain protein [Methanocaldococcus sp. FS406-22] Length = 339 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 7/100 (7%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + S V++I L+ A+++D+ +IP++ +I M+ L+ + Y + ++ Sbjct: 3 LLSVVYIINFILLILASITDIKERIIPHKYTIAMIIMNLV------VGYYYFGFNAIIAF 56 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106 +I + MGGGDVKL T+ A F + SF+ ++ Sbjct: 57 FSTLILCLILSVG-MGGGDVKLFTALAPIFAYPNSFVFYI 95 >gi|187919322|ref|YP_001888353.1| peptidase A24A prepilin type IV [Burkholderia phytofirmans PsJN] gi|187717760|gb|ACD18983.1| peptidase A24A prepilin type IV [Burkholderia phytofirmans PsJN] Length = 178 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 18/157 (11%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 ++ AAL DL + IPN + + L + + + + + + L + Sbjct: 14 ALVLVAALWDLQTRRIPNWLVVTGLIVAIPVQWFTHGVVDGMTMWMGGMLAGGAFFLPGY 73 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 A +MG GDVKL+ + + G L ++G I S+ I R Sbjct: 74 AMRLMGAGDVKLMAAIGAFCG-AYGALEIGLATCVIGAIGSLAIWLRRRQMRAGLNGAAA 132 Query: 137 V-----------------PKSFLMKNKIPYGIAISMG 156 + +PYGIAI++G Sbjct: 133 LLISCATPGNGALRRSGSVAESSATGTMPYGIAIAIG 169 >gi|83338418|gb|ABC11886.1| PilD [Aliivibrio fischeri] Length = 295 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 7/124 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 F+ ++ L+ D+ + ++P+++++ +L S L A + L+ + Sbjct: 133 FAIAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192 Query: 68 VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 I+ ++ F + MG GD KLL + W GW L + +++G I+ V +L Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-IILLSSVVGAIIGVIML 251 Query: 122 TVRM 125 T + Sbjct: 252 TAQK 255 >gi|167574000|ref|ZP_02366874.1| peptidase A24A, prepilin type IV [Burkholderia oklahomensis C6786] Length = 164 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 16/157 (10%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 V AA DL S IPNR+ + L L+ L + A L + F+ Sbjct: 1 MLAVVAASIDLSSRRIPNRLIALGLAGALVAQCGLPGPHNGFAAWLAGAATGAGLLLPFY 60 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI---- 132 M GDVKL+ + W G + + L + I+GG ++ ++ R + Sbjct: 61 LLRGMAAGDVKLMLAIGAWVGPSLA-LRIVLATFIVGGAWALAVVLRRGQFRKLLANLRH 119 Query: 133 -----------FGMFVPKSFLMKNKIPYGIAISMGGL 158 + F +PYG+AI++G L Sbjct: 120 LFASAALLRNPSAVRATPEFDSVGMLPYGVAIAIGTL 156 >gi|296156487|ref|ZP_06839325.1| peptidase A24A prepilin type IV [Burkholderia sp. Ch1-1] gi|295893086|gb|EFG72866.1| peptidase A24A prepilin type IV [Burkholderia sp. Ch1-1] Length = 178 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 18/156 (11%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 + AAL D+ + IPN + L + + + E + + L L I +A Sbjct: 15 LVFVAALWDMQTRRIPNWLVAAGLIAAMPVQWFTHGAVEGMTMWLGGMLAGGAIFLPGYA 74 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI----------- 126 ++G GDVKL+ + + G L ++G I S+ I R Sbjct: 75 MRLLGAGDVKLMAAIGAFCG-AYGALEIGLATCVIGAIGSLAIWLRRRQMCAGLSGMAAL 133 Query: 127 ------TNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156 + +PYG+AI++G Sbjct: 134 LIDCATPGNGARRRSGSVAESSATGTMPYGVAIAIG 169 >gi|197117919|ref|YP_002138346.1| type IV prepilin-like proteins leader peptide processing enzyme [Geobacter bemidjiensis Bem] gi|197087279|gb|ACH38550.1| type IV prepilin-like proteins leader peptide processing enzyme [Geobacter bemidjiensis Bem] Length = 274 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 6/128 (4%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 V + LV DL +IP+ +++ ++ F + F+ + + + +L G Sbjct: 120 VLFVFCSALVVVTFIDLEHQIIPDAITLPGIVAGFAASFFIPQLGWLNSLIGILAGGGSL 179 Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + + + MGGGD+KLL + GW + L +F +++G ++ V ++ R Sbjct: 180 FLVAYIYQAIAKKDGMGGGDIKLLAMMGAFLGW-KAILFIIFTASLIGSVIGVSVMLARK 238 Query: 126 ITNHIPIF 133 + + I Sbjct: 239 ENSSLAIP 246 >gi|134299957|ref|YP_001113453.1| peptidase A24A, prepilin type IV [Desulfotomaculum reducens MI-1] gi|134052657|gb|ABO50628.1| peptidase A24A, prepilin type IV [Desulfotomaculum reducens MI-1] Length = 167 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 51/151 (33%), Gaps = 15/151 (9%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 +DL I N V L F+ G I + + + F MG Sbjct: 16 YTDLRYRKIYNAVLFPTFLLALTYWFVSG-GLGGILFSIKGATLGLALLLIPFMLGGMGA 74 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS-------------VFILTVRMITNHI 130 GDVKLL W G +L FL AI+GGI++ + + + Sbjct: 75 GDVKLLAVIGAWQGPQFVWLCFL-CTAIVGGIIAAVQLSKSGRLLQSLKYILFTFLPGAP 133 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + PYG+AI+ G +Y Sbjct: 134 KAHAFGTLTTAKAGEAFPYGVAIASGTFATY 164 >gi|186474100|ref|YP_001861442.1| peptidase A24A prepilin type IV [Burkholderia phymatum STM815] gi|184196432|gb|ACC74396.1| peptidase A24A prepilin type IV [Burkholderia phymatum STM815] Length = 178 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 16/161 (9%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 + AA+ DL + IPN + ++ LG L L ++L ++ L + + Sbjct: 14 ALVAIAAIYDLHARRIPNWLVVIGLGVGLAVQAALHGMASGMSLWVVGALTGGAMLMPGY 73 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 ++G GDVKL+ + + G +F + L A+ G V +L + + Sbjct: 74 LLRMLGAGDVKLMAAVGCFCGGAGAFQAALAVCAVGGVWALVELLRHGQMRAGLQNMTAA 133 Query: 137 VPKSFLMKNK----------------IPYGIAISMGGLISY 161 + ++ +PYG+AI++G +++ Sbjct: 134 LTDVWMPSGGTPHAGSTRTRRPTAGSLPYGVAIAVGTMLAL 174 >gi|269966288|ref|ZP_06180376.1| leader peptidase PilD [Vibrio alginolyticus 40B] gi|269829085|gb|EEZ83331.1| leader peptidase PilD [Vibrio alginolyticus 40B] Length = 289 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 F+ L F L+ A DL + ++P+++++ + + ++ A + + + + + G Sbjct: 129 FTVALLFFTFILIAATFIDLDTMLLPDQLTLPLTWTGIVLALVEISPVTLQDSVIGAIAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW S + +++G + + L Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGIVFGIIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|163803452|ref|ZP_02197325.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio sp. AND4] gi|159172753|gb|EDP57601.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio sp. AND4] Length = 289 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65 F+ + L+ A DL + ++P+++++ ++ + A + + + + + G Sbjct: 129 FTVALIFFTLLLIAATFIDLDTMLLPDQLTLPLMWGGITLALIGVSPISLQDSVIGAMTG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW S + +++G I + L Sbjct: 189 YLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|171317110|ref|ZP_02906313.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5] gi|171097744|gb|EDT42571.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MEX-5] Length = 166 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 2/146 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M + A SD+ S I N + + L S +AF + + LVG Sbjct: 1 MAHPIFSAVFLVWATLVAASDIRSRRISNGLVLAGLASGFASAFFDAGPFGISLPQALVG 60 Query: 66 LIVFIIC-FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 +++ ++ F FF MG DVK+ W G S L +++ G+ +V ++ + Sbjct: 61 MLIGLVGLFPFFLLRAMGAADVKVFAVLGAWCG-AHSLLGLWVIASLVAGLHAVVLMLLS 119 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYG 150 + + + PY Sbjct: 120 RTSPGVLWHRREPTLALGRYRATPYA 145 >gi|325958918|ref|YP_004290384.1| peptidase A24A domain-containing protein [Methanobacterium sp. AL-21] gi|325330350|gb|ADZ09412.1| Peptidase A24A domain protein [Methanobacterium sp. AL-21] Length = 391 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 4/113 (3%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL---LVGLIVF 69 +I ++A+ SDL +I N+++ ++ ++ + + I L L V +VF Sbjct: 11 IIAVVACIYASYSDLKFGLIKNKLTFPLIAIGIILNGIYVLITNDIFLFLEGCFVTGLVF 70 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGW-TPSFLSFLFFVAILGGILSVFIL 121 I+ + F+ GGDVKL T+ A + S+ + ILG + L Sbjct: 71 IVGYVFWKMGAWAGGDVKLFTAVAALIPFYATSYYPTIVTYQILGWQFPLLSL 123 >gi|83720453|ref|YP_443062.1| peptidase [Burkholderia thailandensis E264] gi|83654278|gb|ABC38341.1| peptidase, putative [Burkholderia thailandensis E264] Length = 166 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 2/125 (1%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIICFCFFAFNIMGGG 84 D IPN + + L + ++ +E + L+G V + F FFA +MG Sbjct: 21 DCRDRRIPNELVLAGLAAVIIFTVCRQNPFETTLVGALIGGAVGLVSLFPFFALRLMGAA 80 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVK+ W G P+ ++ GI ++ +L + + + Sbjct: 81 DVKVFAVLGAWCGL-PALPRLWIVASVAAGIHALGLLLLTRTPLGSLGRNGAPAFALGAR 139 Query: 145 NKIPY 149 PY Sbjct: 140 RSAPY 144 >gi|212638474|ref|YP_002314994.1| type II secretory pathway, prepilin signal peptidase PulO [Anoxybacillus flavithermus WK1] gi|212559954|gb|ACJ33009.1| Type II secretory pathway, prepilin signal peptidase PulO [Anoxybacillus flavithermus WK1] Length = 249 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 19/140 (13%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLL--TAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81 +SD+ +IPNRV + + L+ +F + L VG + + + M Sbjct: 112 VSDVHYMIIPNRVLLFLAPLLLIERLSFAPLTPWWDSLLGSFVGFTMLFV-IALLSKGGM 170 Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141 GGGD+KL + G + L+F ++G + + + + + P Sbjct: 171 GGGDIKLFAVIGLALGAKLTVLAFFLST-LVGTVFGLIGMALGRVRRGQP---------- 219 Query: 142 LMKNKIPYGIAISMGGLISY 161 +P+G AI +G LI+Y Sbjct: 220 -----MPFGPAIVVGTLIAY 234 >gi|20089408|ref|NP_615483.1| hypothetical protein MA0519 [Methanosarcina acetivorans C2A] gi|19914306|gb|AAM03963.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 254 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 8/149 (5%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS---FLLTAFLLGMDYELIALHL 62 M+ L L++A +DL + + N+V ML S F++ G + + Sbjct: 1 MIEILKILFTMPFLLYACYTDLKARRVSNKVWKYMLASGSVFIIYEVFTG-GVPCLKALI 59 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG----GILSV 118 G+IVF+ + F GGGD K L ++ F P F +LG G+ + Sbjct: 60 FSGVIVFLSVYILFQLGAFGGGDAKGLIVLSILFPLYPVFQFSGKVYPLLGLPPIGLFAF 119 Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKI 147 +L ++ + GMF + + Sbjct: 120 TVLENALLVTVLVPLGMFCYNLLHFSSGM 148 >gi|167566931|ref|ZP_02359847.1| peptidase A24A, prepilin type IV [Burkholderia oklahomensis EO147] Length = 164 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 16/157 (10%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 V AA DL S IPNR+ + L L+ L + A L + F+ Sbjct: 1 MLAVVAASIDLSSRRIPNRLIALGLAGALVAQCGLPGPHNGFAAWLAGAATGAGLLLPFY 60 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI---- 132 M GDVKL+ + W G + L + I+GG ++ ++ R + Sbjct: 61 LLRGMAAGDVKLMLAIGAWVGPS-LALRIVLATFIVGGAWALAVVLRRGQFRKLLANLRH 119 Query: 133 -----------FGMFVPKSFLMKNKIPYGIAISMGGL 158 + F +PYG+AI++G L Sbjct: 120 LFASAALLRNPSAVRAAPEFDSVGMLPYGVAIAIGTL 156 >gi|172065270|ref|YP_001815982.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6] gi|171997512|gb|ACB68429.1| peptidase A24A prepilin type IV [Burkholderia ambifaria MC40-6] Length = 179 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L + AA +D+ S IPNR+ + L L+ L L F + Sbjct: 12 LCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCALHGIQAGALAWLAGAATGFGLL 71 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-------- 124 F+ M GDVKL+ + W G +F + ++GGI ++ +R Sbjct: 72 LPFYLLRGMAAGDVKLMLAIGAWVGAQMTFY-IVLATFLVGGIGAIGFALLRGRMRQMCA 130 Query: 125 -------MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + P F +PYG+AI+ G L Sbjct: 131 NVWTLIARRSTGAYAGATDGPVEFASVGALPYGVAIAAGTL 171 >gi|46580522|ref|YP_011330.1| hypothetical protein DVU2117 [Desulfovibrio vulgaris str. Hildenborough] gi|46449941|gb|AAS96590.1| membrane protein, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311234261|gb|ADP87115.1| peptidase A24A prepilin type IV [Desulfovibrio vulgaris RCH1] Length = 188 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 19/159 (11%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 + L+ A ++D+ S IPN ++ ML + G+D + + + Sbjct: 8 VLGVILLIAVVTDIRSMRIPNWLTFPAMLMGLGYHTAMRGLD--GLLFSAGGLALGGALM 65 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F +MG GDVKL+ + + G T LS + ++ GG+ ++ +L + + Sbjct: 66 LLPFILRVMGAGDVKLMAAAGAFLG-TRGVLSAFIWTSLAGGLYALVVLLFHLPQLMAIL 124 Query: 133 FGMFVPKSFLMKNK----IP-----------YGIAISMG 156 + F+ IP YG+AI+ G Sbjct: 125 RAVVASVRFMSVTGKLSYIPATKDARLPRLCYGVAIAAG 163 >gi|297617366|ref|YP_003702525.1| prepilin peptidase [Syntrophothermus lipocalidus DSM 12680] gi|297145203|gb|ADI01960.1| Prepilin peptidase [Syntrophothermus lipocalidus DSM 12680] Length = 250 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 16/148 (10%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + CL ++DL +IP+ V I L + + +L L +G F+ Sbjct: 103 VLVSCLTVITVADLKHMVIPDEVIIFALVTGGILLYLDSWARLKWGLASGLGAANFLALV 162 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 + MG GDVKL ++ G + + LF + G ++ + ++ Sbjct: 163 ILVSRGGMGWGDVKLAGVLGLFLGVGGTLVG-LFVAFVAGALVGLSLVVAGRKGAKDL-- 219 Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISY 161 IP+G +S+GGL+++ Sbjct: 220 -------------IPFGPFLSLGGLVAF 234 >gi|296134300|ref|YP_003641547.1| peptidase A24A prepilin type IV [Thermincola sp. JR] gi|296032878|gb|ADG83646.1| peptidase A24A prepilin type IV [Thermincola potens JR] Length = 176 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 18/165 (10%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 LI L +DL I N+ + F L F + L + + Sbjct: 11 LILVLLLTVCLYTDLKERKIYNKF-VFPAIVFGLLYFTYIKGGSGLIFSLKGFGLGIALL 69 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-------- 124 F FA G GDVKLL + G F +F+ A+ GG++++ L + Sbjct: 70 FIPFALGGFGAGDVKLLGAVGALKGPAFVFAAFVL-TALAGGLIALGFLICQGRFFITLK 128 Query: 125 --------MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 ++ I + + PYGIAI G + +Y Sbjct: 129 RIVISLYILVGTRFKINSLNSLEKAEYHRAFPYGIAIVAGTVAAY 173 >gi|148642206|ref|YP_001272719.1| type IV leader peptidase [Methanobrevibacter smithii ATCC 35061] gi|148551223|gb|ABQ86351.1| type IV leader peptidase [Methanobrevibacter smithii ATCC 35061] Length = 289 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 7/104 (6%) Query: 6 MVFSAVFLIP----PFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---DYELI 58 M FS +FL+ AA+ D+ + +I NR+++ +L L++ L + + + I Sbjct: 1 MDFSIIFLVQIIVTSLFCCLAAIFDVKTGIISNRLNLSLLIFGLISNLFLSVLSANIKYI 60 Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102 ++ + +I+ F F+ I GGGDVKLLT+ A + + Sbjct: 61 LCSIISMFVTYIVTFLFWKLKIWGGGDVKLLTAIATVIPFGINL 104 >gi|255767643|ref|NP_390685.2| membrane protease and transmethylase [Bacillus subtilis subsp. subtilis str. 168] gi|251757293|sp|P15378|LEP4_BACSU RecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; AltName: Full=Late competence protein ComC; Includes: RecName: Full=Leader peptidase; AltName: Full=Prepilin peptidase; Includes: RecName: Full=N-methyltransferase gi|225185271|emb|CAB14767.2| membrane protease and transmethylase [Bacillus subtilis subsp. subtilis str. 168] Length = 248 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 16/149 (10%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L+ A++D+ +IPNR+ I L + +D L +F+ Sbjct: 100 VVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAV 159 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 +GGGD+KL G +F F V I + +LT R Sbjct: 160 IAAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGR-------- 211 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + +P+ AI+ G +++Y Sbjct: 212 --------LAKRQPLPFAPAIAAGSILAY 232 >gi|113866747|ref|YP_725236.1| flp pilus assembly leader peptidase CpaA [Ralstonia eutropha H16] gi|113525523|emb|CAJ91868.1| flp pilus assembly leader peptidase CpaA [Ralstonia eutropha H16] Length = 177 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 12/153 (7%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 ++ AA DL IPN ++ + L + L + ++ F+ Sbjct: 18 IVLTAAAIDLDRRRIPNWLTFGAWIAALPLMATIHGPAAGSLAWLYGWTVGLVLFLPFYL 77 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG------------GILSVFILTVRM 125 M GDVKL+ + W G + + L I G G ++ + + Sbjct: 78 MRGMAAGDVKLMAAVGAWLGGSMALKIALATCVIGGAWALVQVLATGQGRSTLARVGHML 137 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 I +P P++ +PYG+AI+ G L Sbjct: 138 IAALVPGSRPVQPQAEASAGSLPYGVAIAAGTL 170 >gi|323493654|ref|ZP_08098775.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio brasiliensis LMG 20546] gi|323312177|gb|EGA65320.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio brasiliensis LMG 20546] Length = 289 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 F+ + F L+ A DL + ++P+++++ + + + + L + + + + G Sbjct: 129 FTIALIFFTFVLIAATFIDLDTMLLPDQLTLPLTWAGIALSLLQISPVSLQDSVIGAIAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G + + L Sbjct: 189 YLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGW-QYLPMVILLSSLVGLVFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLKQQ 252 >gi|161524908|ref|YP_001579920.1| peptidase A24A prepilin type IV [Burkholderia multivorans ATCC 17616] gi|189350342|ref|YP_001945970.1| prepilin peptidase [Burkholderia multivorans ATCC 17616] gi|160342337|gb|ABX15423.1| peptidase A24A prepilin type IV [Burkholderia multivorans ATCC 17616] gi|189334364|dbj|BAG43434.1| prepilin peptidase [Burkholderia multivorans ATCC 17616] Length = 165 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 8/155 (5%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 I + A SD+ I N + I L L+ + + + + L+G + +ICF Sbjct: 9 IFLVWVTLVASSDIRFRNIRNSLVIAGLAGALIGVTVNENPFGISLVQSLIGASIGLICF 68 Query: 74 C-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 FA +MG DVK+ W G + L F ++ + +++++ + Sbjct: 69 FPLFAMRVMGAADVKVFAVLGAWCG-AQALLGFWIVASLAASLHALWLMVASRTSVAALY 127 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLF 167 S + PY + P + Sbjct: 128 KRNTPAMSLGGRRATPY------AAFLVMPAAAWL 156 >gi|83338398|gb|ABC11883.1| PilD [Aliivibrio fischeri] Length = 295 Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 7/124 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 F+ ++ L+ D+ + ++P+++++ +L S L A + L+ + Sbjct: 133 FAVAAILFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWNSVSLVDSVVGAMAG 192 Query: 68 VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 I+ ++ F + MG GD KLL + W GW L + +++G I+ V +L Sbjct: 193 YLILWSIYWCFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-IILLSSVVGAIIGVIML 251 Query: 122 TVRM 125 T + Sbjct: 252 TAQK 255 >gi|84489263|ref|YP_447495.1| hypothetical protein Msp_0452 [Methanosphaera stadtmanae DSM 3091] gi|84372582|gb|ABC56852.1| conserved hypothetical membrane-spanning protein [Methanosphaera stadtmanae DSM 3091] Length = 363 Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM-LGSFLLTAFLLGMDYELIALHLL 63 ++ + LI C + A +D+ +IPN+++I + + L + + + + Sbjct: 4 NLIKISGILIVTVCCIIATYTDVKYGIIPNKLTIPLFVVGICLVSLYYFLSSTFNFFYYV 63 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTA 93 +I+F++ + + + GGDVKL T+ + Sbjct: 64 SIVIIFLLNYILWYLGLWAGGDVKLFTAIS 93 >gi|254230335|ref|ZP_04923722.1| bacterial Peptidase A24 N-terminal domain family [Vibrio sp. Ex25] gi|151937159|gb|EDN56030.1| bacterial Peptidase A24 N-terminal domain family [Vibrio sp. Ex25] Length = 267 Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 F+ L F L+ A DL + ++P+++++ + + + A + + + + + G Sbjct: 129 FTVALLFFTFILIAATFIDLDTMLLPDQLTLPLTWAGIALALVEISPVTLQDSVIGAIAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW S + +++G + + L Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGIVFGIIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|238027565|ref|YP_002911796.1| peptidase A24A, prepilin type IV [Burkholderia glumae BGR1] gi|237876759|gb|ACR29092.1| Peptidase A24A, prepilin type IV [Burkholderia glumae BGR1] Length = 166 Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 2/145 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + + A D+ IPN + + L +++ + + + ++G Sbjct: 1 MILILSVAVFLAWVTMVAAGDIRYRRIPNSLVVAGLICGMVSTISRYNPFGITPVEAVIG 60 Query: 66 LIV-FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 ++ F+ F FFA +MG DVK+ T +W G+ F ++ ++ I + ++ Sbjct: 61 AVIGFVGLFPFFACRLMGAADVKVFTVLGLWCGFQGLFWCWI-AASLAALIHVLGMMYWT 119 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149 + + PY Sbjct: 120 RTPIGALWQRGSPTLALGARRGSPY 144 >gi|134295592|ref|YP_001119327.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4] gi|134138749|gb|ABO54492.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4] Length = 166 Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 2/147 (1%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + + A SD+ IPN + + + +A + + LH L+G++V + C Sbjct: 9 VFLAWAILVAASDIRYRRIPNSLVFGGVAAAFASALCGASPFGIAPLHALLGMLVGMACL 68 Query: 74 C-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 FF +MG DVK+ + W G L +++ + ++ +L + Sbjct: 69 LPFFVARVMGAADVKVFAALGAWCG-VHGLLWLWIAASLVACLHALAVLLLTRTPLRALR 127 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLI 159 + PYG +++ + Sbjct: 128 GRSAPTLALGRYRATPYGACLAIPAAL 154 >gi|196250148|ref|ZP_03148842.1| peptidase A24A domain protein [Geobacillus sp. G11MC16] gi|196210332|gb|EDY05097.1| peptidase A24A domain protein [Geobacillus sp. G11MC16] Length = 251 Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 16/158 (10%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 +SDL +IP+RV +V FL+ + + L + ++ Sbjct: 108 ALFAIIVVSDLRYMLIPDRVLVVFAALFLIERLFIPFLPWMDMLIGAAVGFLLLLLIAVL 167 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 + MGGGDVKL GW L+F A+ G ++ + + + + +P Sbjct: 168 SKGGMGGGDVKLFAVLGFVLGWKMVLLAFFL-AALYGTVIGLVGMALGHVRRGVP----- 221 Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174 +P+ AI++G L ++ A + L Sbjct: 222 ----------MPFAPAIALGTLTAFFFGEAMVRAYLSL 249 >gi|323499924|ref|ZP_08104883.1| hypothetical protein VISI1226_15791 [Vibrio sinaloensis DSM 21326] gi|323315165|gb|EGA68217.1| hypothetical protein VISI1226_15791 [Vibrio sinaloensis DSM 21326] Length = 168 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 1/96 (1%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 F L+ A+SD IPN + I+ L + + L+ G +F Sbjct: 7 FVLLMIAVSDAREHRIPNVLLILTLVLCVAKMLVQPTLSPSFTEALMGGGAMFFGALVLH 66 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112 +M GDVKLL W GW + ++A+ Sbjct: 67 LLRVMAPGDVKLLGVVGFWLGWG-HLMDISLWIAVA 101 >gi|83720542|ref|YP_442982.1| CpaA2 pilus assembly protein [Burkholderia thailandensis E264] gi|167620128|ref|ZP_02388759.1| peptidase A24A, prepilin type IV [Burkholderia thailandensis Bt4] gi|257139206|ref|ZP_05587468.1| CpaA2 pilus assembly protein, putative [Burkholderia thailandensis E264] gi|83654367|gb|ABC38430.1| probable CpaA2 pilus assembly protein , putative [Burkholderia thailandensis E264] Length = 161 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 9/148 (6%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ + L AL+DL + + ++ + + A A H +G I F Sbjct: 9 IVASWTLASLALADLRTRRLATFAVALVGALYGVQALAGAPGDGGFAPHAAIGAIAFAFG 68 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F + GGDVKL +W G ++ + V I R Sbjct: 69 AAMFRIGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGVVCIAARRAPRALAW- 127 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 F +PYG+A++ GG+++ Sbjct: 128 --------FAPARGVPYGVALAAGGVLA 147 >gi|283779852|ref|YP_003370607.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068] gi|283438305|gb|ADB16747.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068] Length = 189 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 17/171 (9%) Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63 S M + L+ AA+ D F +PN ++ + S + + +E + L+ Sbjct: 10 SAMAEHWTVWLVTIVLILAAVIDGFELKVPNWITFPFIISGWIYSVAA-FGWEGLGWSLV 68 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 ++ + ++ MG GDVKLL W T +F +F + + +L Sbjct: 69 GTVVGLALLLPAYSIGGMGAGDVKLLAGVGAWMYGTHTFYAFCASAVVGALCAVIMVLAK 128 Query: 124 RMITNHIPIFGMFVPKSFLMKNK----------------IPYGIAISMGGL 158 R H F + + + ++ N +PYGI I++G + Sbjct: 129 RAWKKHSDQFWLILNEIMVIGNPEKLAVIAAKRKPSMLLLPYGIPIAIGTI 179 >gi|225174802|ref|ZP_03728800.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1] gi|225169929|gb|EEG78725.1| peptidase A24A prepilin type IV [Dethiobacter alkaliphilus AHT 1] Length = 185 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 17/159 (10%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 + ++D+ I N V + L + L+ ++ Y L + F F Sbjct: 11 VTVCMITDIIERKIYNVVVLAGLVTALVLNVIVQGFYSGAVFTLAGFFTGIFLLVIPFVF 70 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV----------------FILT 122 +G GDVK+L + G+ P + L AI+GG+ ++ F+ Sbjct: 71 GGLGAGDVKMLGMIGAFTGY-PVVIQVLLVSAIVGGVFALYTMLRQGKMFKRLKTFFLGI 129 Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + + + KN IPYG+A+S+G +I Y Sbjct: 130 FCAAAARKTVHMNNLDEKDAGKNAIPYGVALSVGVIIVY 168 >gi|222480546|ref|YP_002566783.1| peptidase A24A prepilin type IV [Halorubrum lacusprofundi ATCC 49239] gi|222453448|gb|ACM57713.1| peptidase A24A prepilin type IV [Halorubrum lacusprofundi ATCC 49239] Length = 330 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 9/124 (7%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRV--------SIVMLGSFLLTAFLLGMDYELIAL 60 A+ L +AAL D+ + +PNR+ +++++ L G + A+ Sbjct: 7 DALRLFVVPVFAWAALQDVRTRRLPNRLWPPLYAFGALLLIWELAAIWPLAGFEEVRFAV 66 Query: 61 HLLVGLIVFI-ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 + L+ + + F+ GG D K L + A+ F P + + ++ L VF Sbjct: 67 RAAISLLFVAPLGYAFWYLGAFGGADAKALIAIAILFPTFPEYAVAGLILPLVDTQLGVF 126 Query: 120 ILTV 123 LTV Sbjct: 127 SLTV 130 >gi|149191272|ref|ZP_01869527.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio shilonii AK1] gi|148834870|gb|EDL51852.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio shilonii AK1] Length = 289 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66 S ++ F L+ A D + ++P+++++ ++ + A L + + + G Sbjct: 130 SLALIVFTFVLIGATFIDFDTMLLPDQLTLPLMWLGIALALLGISPISLTDSVIGAMAGY 189 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL + W GW L + +++G + + L Sbjct: 190 LCLWSTFWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPL-IVLMSSVVGVLFGLVQLR 248 Query: 123 VRM 125 ++ Sbjct: 249 MQK 251 >gi|269101772|ref|ZP_06154469.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161670|gb|EEZ40166.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 292 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 7/130 (5%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML--GSFLLTAFLLGMDYELIALHLLVGL 66 + + F L+ D+ ++P+++++ +L G FL + + + + + G Sbjct: 133 AVAVIFFTFALIALTFIDIDKMLLPDQITLPLLWAGIFLALLGISPVSLQDSVIGAIAGY 192 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F + MG GD KLL + W GW + + ++ G I + +L Sbjct: 193 LCLWSVFWIFKLLTKKDGMGYGDFKLLAALGAWLGWQMLPV-VVLLSSLAGAICGIILLK 251 Query: 123 VRMITNHIPI 132 V+ + P Sbjct: 252 VQKSDHQTPF 261 >gi|229084393|ref|ZP_04216673.1| Peptidase A24A domain protein [Bacillus cereus Rock3-44] gi|228698933|gb|EEL51638.1| Peptidase A24A domain protein [Bacillus cereus Rock3-44] Length = 240 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCFF 76 L+ ++DLF +IPN + + SFL+ + + + + + IV F Sbjct: 107 LLIIITMTDLFYMLIPNIILVFFACSFLIERIFIPLVPWWDSLIGGGIICIVLYFAQIIF 166 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 N +GGGDVKLL+ G + F ++ L + +L RM FG F Sbjct: 167 -PNGLGGGDVKLLSLLGFIVGVKAILIVLCFASSLGLCFLGIGMLLKRMTARQPLPFGPF 225 Query: 137 VP 138 + Sbjct: 226 IA 227 >gi|257784114|ref|YP_003179331.1| peptidase A24A prepilin type IV [Atopobium parvulum DSM 20469] gi|257472621|gb|ACV50740.1| peptidase A24A prepilin type IV [Atopobium parvulum DSM 20469] Length = 162 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 8/101 (7%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL-------LVGLIVFIIC 72 + A++SD+ IPNR+ I+++ + + + E+I L V ++V I+ Sbjct: 11 ICASISDMRDRTIPNRIPIMLVFLWPIWLAVNKNRAEMIMSSLWSELFVICVLILVSIVT 70 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113 + +GGGD+KL+ ST ++ +F+ FLF ILG Sbjct: 71 KFIGHMSSIGGGDIKLILSTCLYLEIKETFV-FLFLANILG 110 >gi|262393316|ref|YP_003285170.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio sp. Ex25] gi|262336910|gb|ACY50705.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio sp. Ex25] Length = 289 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 F+ L F L+ A DL + ++P+++++ + + + A + + + + + G Sbjct: 129 FTVALLFFTFILIAATFIDLDTMLLPDQLTLPLTWAGIALALVEISPVTLQDSVIGAIAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW S + +++G + + L Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGIVFGIIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|138896192|ref|YP_001126645.1| late competence protein ComC [Geobacillus thermodenitrificans NG80-2] gi|134267705|gb|ABO67900.1| Late competence protein ComC [Geobacillus thermodenitrificans NG80-2] Length = 248 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 16/158 (10%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 +SDL +IP+RV +V FL+ + + L + ++ Sbjct: 105 ALFAIIVVSDLRYMLIPDRVLVVFAALFLIERLFIPFLPWMDMLIGAAVGFLLLLLIAVL 164 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 + MGGGDVKL GW L+F A+ G ++ + + + + +P Sbjct: 165 SKGGMGGGDVKLFAVLGFVLGWKMVLLAFFL-AALYGTVIGLVGMALGHVRRGVP----- 218 Query: 137 VPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174 +P+ AI++G L ++ A + L Sbjct: 219 ----------MPFAPAIALGTLTAFFFGEAMVRAYLSL 246 >gi|115361030|ref|YP_778167.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD] gi|115286358|gb|ABI91833.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD] Length = 180 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 60/160 (37%), Gaps = 14/160 (8%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L + AA +D+ S IPNR+ + L L+ L L F + Sbjct: 13 LCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCTLHGIQAGALAWLAGAATGFGLL 72 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG-GILSVFILTVRMITNHIP 131 F+ M GDVKL+ + W G +F L + G G + +L RM Sbjct: 73 LPFYLLRGMAAGDVKLMLAIGAWVGAQMTFYIVLATFLVGGIGAIGFALLRGRMRQMCAN 132 Query: 132 IFGMFVPKS-------------FLMKNKIPYGIAISMGGL 158 ++ + +S F +PYG+AI+ G L Sbjct: 133 VWALIAHRSTGAYAGATDGPVEFASVGALPYGVAIAAGTL 172 >gi|213536369|gb|ACJ51096.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +I+G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSIVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|213536359|gb|ACJ51091.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWTGIALALLEISPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|167589714|ref|ZP_02382102.1| Peptidase A24A, prepilin type IV [Burkholderia ubonensis Bu] Length = 116 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 1/106 (0%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L A+ DL + + NR + + + A L+ + +A H+ G + ++ Sbjct: 11 AVLASLAVQDLRARRLSNRAVLAFATLYFVAAALVRDGFAPVAGHVATGAAMLLLFGGLR 70 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 +GGGDVKL + +W G + L V G V L Sbjct: 71 HAGWIGGGDVKLAAAVFLWAGPA-LAVPVLTIVGAGGLACGVAALA 115 >gi|83589201|ref|YP_429210.1| peptidase A24A, prepilin type IV [Moorella thermoacetica ATCC 39073] gi|83572115|gb|ABC18667.1| Peptidase A24A, prepilin type IV [Moorella thermoacetica ATCC 39073] Length = 175 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 5/109 (4%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + + ++D S +PN +++ ++ + + + + F++ Sbjct: 7 LFFLSVTVVGVTDFISHYVPNFITLPLM----VAGIFYHLWADNWVASIFGASACFLLGL 62 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 F MGGGDVKL+ + W G + L+ +F + +GG+ + L Sbjct: 63 VMFTLGGMGGGDVKLMAAIGAWMGLYGA-LAVIFVASCIGGVWGLGKLV 110 >gi|51245389|ref|YP_065273.1| hypothetical protein DP1537 [Desulfotalea psychrophila LSv54] gi|50876426|emb|CAG36266.1| unknown protein [Desulfotalea psychrophila LSv54] Length = 191 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 19/166 (11%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 +F+ L + ++DL + IPN +++ +ML + L+ L G L +L + + Sbjct: 12 VLFVSLLIALSVSTVTDLRARRIPNFITLSMMLIALLVHGLLSGFAGVLFSLQGIACGMG 71 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM--- 125 ++ MG GDVKLL + G +F +FL +AILGG+ S+ +L +R Sbjct: 72 LLL--IPHLLGGMGAGDVKLLAAVGAALGAAHTFYAFLV-IAILGGLTSIVMLIIRSTCL 128 Query: 126 ------------ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 + + V +S L + IPYG I+ G L Sbjct: 129 ITLQRMGNAFLAAFGGVGAAALRVDRSTLQREGIPYGAVIAGGTLA 174 >gi|213536339|gb|ACJ51081.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +I+G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSIVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|142704|gb|AAA83365.1| late competence protein [Bacillus subtilis] Length = 248 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 16/149 (10%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L+ A++D+ +IPNR+ I L + +D L +F+ Sbjct: 100 VVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAV 159 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 +GGGD+KL G +F F V I + +LT R Sbjct: 160 IAAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAARVLTGR-------- 211 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + +P+ AI+ G +++Y Sbjct: 212 --------LAKRQPLPFAPAIAAGSILAY 232 >gi|260771889|ref|ZP_05880807.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio metschnikovii CIP 69.14] gi|260613181|gb|EEX38382.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio metschnikovii CIP 69.14] Length = 288 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 7/124 (5%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66 S L+ + L+ A DL S ++P+++++ +L + + A L + + + G Sbjct: 130 SVALLLFTYVLIAATFIDLDSMLLPDQLTLPLLWAGISLALLNISPLSLNDAVIGAIAGY 189 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + + F MG GD KLL + W GW L + +++G + + L Sbjct: 190 LCLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQLLPL-IVLLSSLVGLVFGLIQLR 248 Query: 123 VRMI 126 ++ Sbjct: 249 LQKQ 252 >gi|218509312|ref|ZP_03507190.1| prepilin peptidase protein [Rhizobium etli Brasil 5] Length = 51 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 32/50 (64%) Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGLS 175 +N I G+ +P S L+ KIPYGIAI++GG +++P S +F AL L Sbjct: 2 QSNTILAIGLPLPDSVLVAKKIPYGIAIAIGGFMAFPSSPIFIAALESLK 51 >gi|172058129|ref|YP_001814589.1| peptidase A24A domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990650|gb|ACB61572.1| peptidase A24A domain protein [Exiguobacterium sibiricum 255-15] Length = 252 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 5/111 (4%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF--AFNIMG 82 SDL +IPN++ + L L+ +L E ++ G + F + F F + MG Sbjct: 117 SDLAYMLIPNKILLFFLPISLIVRYLS--PLENWYNPIIGGFVGFFLLFVIFLASRQGMG 174 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 GDVKL ++ G ++ LF A +G I+ + +L + + PI Sbjct: 175 AGDVKLFGVLGIFLGPLHVVIA-LFVSAFVGSIIGLGLLGFKRVERKQPIP 224 >gi|299538329|ref|ZP_07051612.1| type 4 prepilin-like proteins leader peptide processing enzyme [Lysinibacillus fusiformis ZC1] gi|298725916|gb|EFI66508.1| type 4 prepilin-like proteins leader peptide processing enzyme [Lysinibacillus fusiformis ZC1] Length = 250 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 18/156 (11%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65 + V + LV +SDL +IP++V + L ++ L + + + +VG Sbjct: 98 IELIVAFLFISLLVIIVVSDLAYMLIPDKVLVFFLPVLVIGRVLSPLTPWWDSLVGAVVG 157 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + I + MGGGD+KL + G + L+ LF A++G I+ + +L+ Sbjct: 158 FGILYIIAVL-SNGGMGGGDIKLFFLIGLVLGTIDTLLT-LFLAAVIGMIVGITMLSKNK 215 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 P IP+G +I++ +I + Sbjct: 216 QGRKTP---------------IPFGPSIALAAVIVF 236 >gi|197335376|ref|YP_002156985.1| bacterial Peptidase A24 N-terminal domain family protein [Vibrio fischeri MJ11] gi|197316866|gb|ACH66313.1| bacterial Peptidase A24 N-terminal domain family protein [Vibrio fischeri MJ11] Length = 295 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 7/124 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 F+ ++ L+ D+ + ++P+++++ +L S L A + L+ + Sbjct: 133 FAVAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192 Query: 68 VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 I+ ++ F + MG GD KLL + W GW L + +++G I+ V +L Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-LILLSSVVGAIIGVIML 251 Query: 122 TVRM 125 T + Sbjct: 252 TAQK 255 >gi|15669025|ref|NP_247829.1| hypothetical protein MJ_0835.2 [Methanocaldococcus jannaschii DSM 2661] gi|3219922|sp|P81324|Y83C_METJA RecName: Full=Uncharacterized protein MJ0835.2 gi|2826330|gb|AAB98835.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 339 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 7/100 (7%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + + V++I L+ AA++D+ +IP++ +I M+ L+ + Y + ++ Sbjct: 3 LLNVVYIINFILLLLAAITDIKERIIPHKYTIAMIIINLV------VGYYYFGFNAIIAF 56 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106 +I + MGGGDVKL T+ A F + SF+ ++ Sbjct: 57 FSTLILCLILSIG-MGGGDVKLFTALAPIFAYPNSFVFYI 95 >gi|120602161|ref|YP_966561.1| peptidase A24A, prepilin type IV [Desulfovibrio vulgaris DP4] gi|120562390|gb|ABM28134.1| peptidase A24A, prepilin type IV [Desulfovibrio vulgaris DP4] Length = 188 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 19/159 (11%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 + L+ A ++D+ S IPN ++ ML + G+D + + + Sbjct: 8 VLGVILLIAVVTDIRSMRIPNWLTFPAMLMGLGYHTAMRGLD--GLLFSAGGLALGGALM 65 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F +MG GDVKL+ + + G LS + ++ GG+ ++ +L + + Sbjct: 66 LLPFILRVMGAGDVKLMAAAGAFLG-ARGVLSAFIWTSLAGGLYALVVLLFHLPQLMAIL 124 Query: 133 FGMFVPKSFLMKNK----IP-----------YGIAISMG 156 + F+ IP YG+AI+ G Sbjct: 125 RAVVASVRFMSVTGKLSYIPATKDARLPRLCYGVAIAAG 163 >gi|84516641|ref|ZP_01004000.1| hypothetical protein SKA53_08516 [Loktanella vestfoldensis SKA53] gi|84509677|gb|EAQ06135.1| hypothetical protein SKA53_08516 [Loktanella vestfoldensis SKA53] Length = 163 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79 ++ A SDL IPN ++ SF + + + + H L ++ +I F Sbjct: 20 IYVAWSDLRQMKIPNVAVYALVISFAVLGLIA-LPFGQYLWHWLHLPVMLVIGFILNMAR 78 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA-ILGGILSVFILTVRMITNHIPIFGMF 136 ++G GD K + A + T L F A +L G+++ ++ + + +P + + Sbjct: 79 VLGAGDAKFTAAAAPFIATTDLPLVLPLFAACLLAGLVTHRLVKISPLRRLVPHWQSW 136 >gi|213536357|gb|ACJ51090.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + G Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWTGIALALLEISPVSLQDSVFGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|213536335|gb|ACJ51079.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|213536351|gb|ACJ51087.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|187927690|ref|YP_001898177.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12J] gi|187724580|gb|ACD25745.1| peptidase A24A prepilin type IV [Ralstonia pickettii 12J] Length = 181 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 18/178 (10%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M ++ ++ S + + + AA D IPN ++ + L + Sbjct: 1 MNDATLLSSMIGPVAMGVALIAAAIDAQHRRIPNWLTFGAWLAALPLQVAVHGFGNGALE 60 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF- 119 L I F+ M GDVKL+ + W G +F ++GGI ++ Sbjct: 61 WTCGWLTGLAIFLPFYLLRGMAAGDVKLMAAVGAWLGAFMAF-EIAMATFVIGGIWALLF 119 Query: 120 ----------------ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 +L + + +PYG+AI+ G + Sbjct: 120 TLRHKRMAQLRRNLRDVLLTSGQVSREAGAPTPQADASWSVGTLPYGVAIAAGTIAVL 177 >gi|213536349|gb|ACJ51086.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|213536373|gb|ACJ51098.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|218708105|ref|YP_002415726.1| putative prepilin leader peptidase [Vibrio splendidus LGP32] gi|218321124|emb|CAV17074.1| putative prepilin leader peptidase [Vibrio splendidus LGP32] Length = 145 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 16/148 (10%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 ++ + D+ +IPN V + + + + IV + Sbjct: 8 LILLATMAAIVSYQDIRYRIIPNGVVVAVALLGVFY-----ICQTEKFELFYNFFIVLAV 62 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 F FN++ GD KLL + ++ L+ + + GG L++ Sbjct: 63 GAVLFYFNVIAAGDSKLLAAFSLMVSPNMMLLA-VNVILFAGGTLAI----------TQW 111 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLI 159 + G S + +PYG+ I +G L+ Sbjct: 112 VLGKTTGNSEWINRGVPYGVPICLGSLL 139 >gi|213536367|gb|ACJ51095.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|320155370|ref|YP_004187749.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio vulnificus MO6-24/O] gi|213536341|gb|ACJ51082.1| prepilin peptidase [Vibrio vulnificus] gi|319930682|gb|ADV85546.1| leader peptidase (Prepilin peptidase) / N-methyltransferase [Vibrio vulnificus MO6-24/O] Length = 289 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|213536333|gb|ACJ51078.1| prepilin peptidase [Vibrio vulnificus] gi|213536337|gb|ACJ51080.1| prepilin peptidase [Vibrio vulnificus] gi|213536343|gb|ACJ51083.1| prepilin peptidase [Vibrio vulnificus] gi|213536363|gb|ACJ51093.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|90411209|ref|ZP_01219222.1| hypothetical protein P3TCK_06572 [Photobacterium profundum 3TCK] gi|90328055|gb|EAS44376.1| hypothetical protein P3TCK_06572 [Photobacterium profundum 3TCK] Length = 168 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 15/162 (9%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-----LLVG 65 + L+ ++++AL DL IPN +++ L A + + + H L+ Sbjct: 1 MNLVILSVVIYSALYDLRENKIPNSAVVILALFGLTQAIISSLFIGSLDFHHLTDALIGF 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT--- 122 ++ ++ + G GD KLL + + G+ P+ L + I G+LS+ ++ Sbjct: 61 IVGLLVSIILHYLGLFGAGDAKLLAALGIVVGF-PNILLLISMSVIFSGVLSLLLMICKH 119 Query: 123 -----VRMITNHIPIFGMFVPKSFLMK-NKIPYGIAISMGGL 158 R N I P+S + N +P G AI + L Sbjct: 120 EFIPNFRRWANIIFYQFYQSPQSDSIAVNAVPMGGAILLATL 161 >gi|153838706|ref|ZP_01991373.1| bacterial Peptidase A24 N- domain family [Vibrio parahaemolyticus AQ3810] gi|149747866|gb|EDM58744.1| bacterial Peptidase A24 N- domain family [Vibrio parahaemolyticus AQ3810] Length = 289 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65 F+ + F L+ A DL + ++P+++++ + + + A + + + + + G Sbjct: 129 FTVALIFFTFVLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW S + +++G I + L Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLVQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|328474167|gb|EGF44972.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio parahaemolyticus 10329] Length = 289 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65 F+ + F L+ A DL + ++P+++++ + + + A + + + + + G Sbjct: 129 FTVALIFFTFVLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW S + +++G I + L Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLVQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|213536345|gb|ACJ51084.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|83338438|gb|ABC11889.1| PilD [Aliivibrio fischeri] Length = 295 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 7/124 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 F+ ++ L+ D+ + ++P+++++ +L S L A + L+ + Sbjct: 133 FAVAAVLFTLVLIALTFIDIDTMLLPDQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192 Query: 68 VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 I+ ++ F + MG GD KLL + W GW L + +++G I+ V +L Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-IILLSSVVGAIIGVIML 251 Query: 122 TVRM 125 T + Sbjct: 252 TAQK 255 >gi|27364987|ref|NP_760515.1| prepilin peptidase [Vibrio vulnificus CMCP6] gi|7674103|sp|Q56740|LEP4_VIBVU RecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; Includes: RecName: Full=Leader peptidase; AltName: Full=Prepilin peptidase; Includes: RecName: Full=N-methyltransferase gi|1213333|gb|AAA91206.1| VvpD [Vibrio vulnificus] gi|3228678|gb|AAC23601.1| type IV prepilin leader peptidase [Vibrio vulnificus] gi|27361133|gb|AAO10042.1| Leader peptidase (Prepilin peptidase) [Vibrio vulnificus CMCP6] gi|213536361|gb|ACJ51092.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + G Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWTGIALALLEISPVSLQDSVFGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|77462445|ref|YP_351949.1| hypothetical protein RSP_1900 [Rhodobacter sphaeroides 2.4.1] gi|221638308|ref|YP_002524570.1| peptidase A24A, prepilin type IV [Rhodobacter sphaeroides KD131] gi|77386863|gb|ABA78048.1| hypothetical protein RSP_1900 [Rhodobacter sphaeroides 2.4.1] gi|221159089|gb|ACM00069.1| Peptidase A24A, prepilin type IV [Rhodobacter sphaeroides KD131] Length = 167 Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 5/153 (3%) Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62 + + ++ A SD+ IPN+ + + FL+ + + + Sbjct: 7 TPAPAAAVFLPLVLPIALWVAWSDMKFMKIPNKAVLALAAVFLVAGPFV-LPLDDWLWRW 65 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 L L+V + F ++G GD K + A++ L+ F A L G + + Sbjct: 66 LHLLVVLAVGFLMNMGRLIGAGDAKFAAAMALFVALEDLRLALALFAASLLGAFA----S 121 Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155 R + P + P G+A++ Sbjct: 122 HRGLGLLGPFRRATADWESWRRRDFPMGLALAG 154 >gi|253701289|ref|YP_003022478.1| prepilin peptidase [Geobacter sp. M21] gi|251776139|gb|ACT18720.1| Prepilin peptidase [Geobacter sp. M21] Length = 274 Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 57/127 (44%), Gaps = 6/127 (4%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 + LV DL +IP+ +++ ++ F + F+ + + + ++ G + Sbjct: 121 LFVFCSALVVVTFIDLEHQIIPDAITLPGIVVGFAASFFIPQLGWLNSLIGIVAGGGSLL 180 Query: 71 ICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 + + + MGGGD+KLL + GW + + +F +++G ++ V ++ R Sbjct: 181 LIAYVYQAVAKKDGMGGGDIKLLAMMGAFLGW-KAIIFIIFTASLIGSVIGVSVMLARKE 239 Query: 127 TNHIPIF 133 + + I Sbjct: 240 NSSLAIP 246 >gi|213536353|gb|ACJ51088.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITVALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|256832572|ref|YP_003161299.1| peptidase A24A domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686103|gb|ACV08996.1| peptidase A24A domain protein [Jonesia denitrificans DSM 20603] Length = 274 Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 8/122 (6%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSI----VMLGSFLLTAFLLGMDYELIALHLLVGLI 67 L V A DL + +PN++ + V+ L+G ++ + L GLI Sbjct: 117 LLFLTAVGVALAFIDLDTHKLPNKIVLPAYPVVAVLVCFATLLMGWEWTSVIRAALGGLI 176 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAV---WFGWTPSFLSFLFFVAILGGILSVFILTVR 124 ++I+ F MG GDVKL + W GW+ + +LGG+ ++ +L +R Sbjct: 177 LYILYFVLCVIGGMGFGDVKLAGLLGISLGWLGWSYLIVGGFLPF-VLGGLYAIVLLVLR 235 Query: 125 MI 126 + Sbjct: 236 RV 237 >gi|170701160|ref|ZP_02892133.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10] gi|170133941|gb|EDT02296.1| peptidase A24A prepilin type IV [Burkholderia ambifaria IOP40-10] Length = 180 Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 14/160 (8%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L + AA +D+ S IPNR+ + L L+ L L F + Sbjct: 13 LCVTLLAIVAASTDITSRRIPNRLVALGLVGALIAQCALHGIQAGALAWLAGAATGFGLL 72 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG-GILSVFILTVRMITNHIP 131 F+ M GDVKL+ + W G +F L + G G + +L RM Sbjct: 73 LPFYLLRGMAAGDVKLMLAIGAWVGAQMTFYIVLATFLVGGIGAIGFALLRGRMRQMCAN 132 Query: 132 IFGMFVPKSFLMKNK-------------IPYGIAISMGGL 158 ++ + +S +PYG+AI+ G L Sbjct: 133 VWALIAHRSTGAYAGATDGPVEVASVGALPYGVAIAAGTL 172 >gi|213536355|gb|ACJ51089.1| prepilin peptidase [Vibrio vulnificus] gi|213536365|gb|ACJ51094.1| prepilin peptidase [Vibrio vulnificus] gi|213536371|gb|ACJ51097.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITVALIGFTLVLISATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGTMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|134291860|ref|YP_001115629.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4] gi|134135049|gb|ABO59374.1| peptidase A24A, prepilin type IV [Burkholderia vietnamiensis G4] Length = 179 Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 16/161 (9%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L ++ AA +DL S IPNR+ + L L+ L + L + Sbjct: 12 LCVTLLVIVAASTDLASRRIPNRLVVAGLAGALVAQCALHGVPAGVLAWLAGAATGLGLL 71 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV-----RMIT 127 F+ M GDVKL+ + W G +F + + GGI ++ + RM T Sbjct: 72 LPFYLLRGMAAGDVKLMLAIGAWVGAQMTFY-IVLATFVAGGIGALGFALLRGRMRRMWT 130 Query: 128 NHIPIFGMFVPKSFLMKNK----------IPYGIAISMGGL 158 N + +PYG+AI++G L Sbjct: 131 NVWMLVAHRAAAPLAGATDGPVESASVGALPYGVAIAVGTL 171 >gi|229918379|ref|YP_002887025.1| peptidase A24A domain protein [Exiguobacterium sp. AT1b] gi|229469808|gb|ACQ71580.1| peptidase A24A domain protein [Exiguobacterium sp. AT1b] Length = 250 Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 12 FLIPPFC--LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 L F L+ A+SDL + ++PN + LL +L G + + L+G + Sbjct: 102 LLAFAFLSTLLALAMSDLSTMLVPNVILKFTAPVLLLLTYLTGASWWNPLVGALLGFSLL 161 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 F + +G GDVKL T + G ++ LF +++G I+ + ++ + I Sbjct: 162 ATVFFV-SKGGLGAGDVKLFTMIGLVLGPRDVLVA-LFLSSLIGAIVGIGLMMTKKIGRK 219 Query: 130 IPIF 133 PI Sbjct: 220 QPIP 223 >gi|149188848|ref|ZP_01867138.1| Hypothetical membrane protein [Vibrio shilonii AK1] gi|148837268|gb|EDL54215.1| Hypothetical membrane protein [Vibrio shilonii AK1] Length = 113 Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 10/92 (10%) Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 ++ I F F MGGGDVKL+ A+ + ++ L+ I GG+L+V L+ Sbjct: 23 FLLITILLTTFYFGWMGGGDVKLIAILALALPSVITVVA-LWLTMIFGGVLAVARLSQYR 81 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157 + + + + +PYG+AISMG Sbjct: 82 FS---------LISAKKDQRGLPYGVAISMGF 104 >gi|28899300|ref|NP_798905.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio parahaemolyticus RIMD 2210633] gi|260363756|ref|ZP_05776531.1| bacterial peptidase A24 N-terminal domain protein [Vibrio parahaemolyticus K5030] gi|260879008|ref|ZP_05891363.1| bacterial peptidase A24 N-terminal domain protein [Vibrio parahaemolyticus AN-5034] gi|28807524|dbj|BAC60789.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio parahaemolyticus RIMD 2210633] gi|308089548|gb|EFO39243.1| bacterial peptidase A24 N-terminal domain protein [Vibrio parahaemolyticus AN-5034] gi|308111141|gb|EFO48681.1| bacterial peptidase A24 N-terminal domain protein [Vibrio parahaemolyticus K5030] Length = 289 Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65 F+ + F L+ A DL + ++P+++++ + + + A + + + + + G Sbjct: 129 FTVALIFFTFFLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW S + +++G I + L Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLVQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|213536347|gb|ACJ51085.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITIALIGFTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSVVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|83718194|ref|YP_440453.1| peptidase [Burkholderia thailandensis E264] gi|167579111|ref|ZP_02371985.1| peptidase, putative [Burkholderia thailandensis TXDOH] gi|167617226|ref|ZP_02385857.1| peptidase, putative [Burkholderia thailandensis Bt4] gi|257141101|ref|ZP_05589363.1| peptidase, putative [Burkholderia thailandensis E264] gi|83652019|gb|ABC36083.1| peptidase, putative [Burkholderia thailandensis E264] Length = 179 Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 16/161 (9%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L V AA DL S IPNR+ ++ L L+ L + L + Sbjct: 12 LCVALLAVVAASIDLASRRIPNRLIVLGLAGALVAQCALPGPHTGFVAWLAGAATGAGLL 71 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F+ M GDVKL+ + W G T L ++GG ++ ++ R + + Sbjct: 72 LPFYLLRGMAAGDVKLMLAIGAWVGPT-LALHIALATFVVGGAWALAVVVKRGLLRKLLA 130 Query: 133 ---------------FGMFVPKSFLMKNKIPYGIAISMGGL 158 +PYG+AI++G L Sbjct: 131 NLRHLLASAALLRDPSAARAAPEIESVGMLPYGVAIAIGTL 171 >gi|254506804|ref|ZP_05118944.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio parahaemolyticus 16] gi|219550385|gb|EED27370.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio parahaemolyticus 16] Length = 168 Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 36/94 (38%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 F L A+SD IPN + ++ L + + + + ++F Sbjct: 7 FILFIVAVSDAKEHRIPNALLLLTLIACVARMIVEPDLTPSWSAAATGFAVMFAGSLMLH 66 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110 +M GDVKLL W GW F + L+ A Sbjct: 67 LLRVMAPGDVKLLAVIGFWLGWGQLFDATLWIAA 100 >gi|163801329|ref|ZP_02195228.1| hypothetical protein 1103602000598_AND4_10689 [Vibrio sp. AND4] gi|159174818|gb|EDP59618.1| hypothetical protein AND4_10689 [Vibrio sp. AND4] Length = 154 Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 14/135 (10%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAF----LLGMDYELIALHLLVGLIVFIICFCFFAF 78 A D+ I N+ + ++ + F G + L + + V + F A Sbjct: 17 AYEDVKVRKIYNKRIVTLIFLMFIQYFYKLYFKGEQFNLSWFDFCIYITVSLGFFTLGAL 76 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 +G GDVKL+ ++ G L FLF + ++GG+L++ + I + Sbjct: 77 RFLGMGDVKLIMVMLIFIGIDDYSL-FLFHMTLIGGVLAI---------SQKAILNHYFN 126 Query: 139 KSFLMKNKIPYGIAI 153 +PY I I Sbjct: 127 IFGFSSEGVPYAIPI 141 >gi|225414586|ref|ZP_03761775.1| hypothetical protein CLOSTASPAR_05809 [Clostridium asparagiforme DSM 15981] gi|225041885|gb|EEG52131.1| hypothetical protein CLOSTASPAR_05809 [Clostridium asparagiforme DSM 15981] Length = 269 Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 61/173 (35%), Gaps = 24/173 (13%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 + +L+ L+ AL+DL S IP+R + + + A + + L+G I Sbjct: 106 AAPYYLVFSLILLGVALTDLESYEIPDRFHVAAILWWCAGALITEQPLGSYIIKGLLGGI 165 Query: 68 VFIICFC--------FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 + +GGGDVKL T ++ G + L+ + + + ++ Sbjct: 166 LIAGGMLAVSLVFDRLLGRESLGGGDVKLFFVTGLYLGPAVNLLNVIISCLLALILAALL 225 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG-LISYPDSYLFKVAL 171 + R + IP+G AI+ G L L L Sbjct: 226 PDSGRKPGDPAA---------------IPFGPAIAAGTWLCLLGGGPLVSWYL 263 >gi|319937244|ref|ZP_08011651.1| prepilin peptidase [Coprobacillus sp. 29_1] gi|319807610|gb|EFW04203.1| prepilin peptidase [Coprobacillus sp. 29_1] Length = 261 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 1/116 (0%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 + + + L+ + D + +IPN + I L +++ L + + + + V Sbjct: 110 TLISFVFSMILLTICMIDYDTMIIPNGLVICCLIVAIVSVPFLDLSLMDRIIGFFI-ISV 168 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 + + GGGD+KLL + + GW + V I G +LT R Sbjct: 169 PLYIMNLIIPDCFGGGDIKLLAVSGLLMGWINVLIGMFIAVLIAGIYAGYLLLTHR 224 >gi|258625146|ref|ZP_05720063.1| leader peptidase PilD [Vibrio mimicus VM603] gi|258582597|gb|EEW07429.1| leader peptidase PilD [Vibrio mimicus VM603] Length = 304 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65 F+ L+ + L+ A DL + ++P+++++ +L S + A L + + + G Sbjct: 142 FAVAALLFSYVLIAATFIDLDTMLLPDQLTLPLLWSGIALALFGLSPVSLTDAVIGAMAG 201 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + + +++G + + L Sbjct: 202 YLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGLLFGLIQL 260 Query: 122 TVRMI 126 ++ Sbjct: 261 RLQKQ 265 >gi|167584954|ref|ZP_02377342.1| peptidase A24A, prepilin type IV [Burkholderia ubonensis Bu] Length = 175 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 16/156 (10%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 ++ AA +DL IPNR+ V LG L +L + L + + Sbjct: 13 LVIVAASTDLTCRRIPNRLLAVGLGGALTAQCVLLGPWAGALAWLAGAATGLALLLPLYL 72 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI----- 132 + M GDVKL+ + W G + + + GG+ ++ ++ R + Sbjct: 73 MHGMAAGDVKLMLTIGAWVGPALAVW-IVLATFVAGGVGALAVVLWRGRARQLFANVRYL 131 Query: 133 ----------FGMFVPKSFLMKNKIPYGIAISMGGL 158 +P +PYG+AI+ G L Sbjct: 132 LARSALRQQGLAADMPAQVASVGALPYGVAIAAGTL 167 >gi|163733534|ref|ZP_02140977.1| hypothetical protein RLO149_17823 [Roseobacter litoralis Och 149] gi|161393322|gb|EDQ17648.1| hypothetical protein RLO149_17823 [Roseobacter litoralis Och 149] Length = 165 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 5/141 (3%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + P CL + A +DL I N+ + + +++ + E I + F Sbjct: 15 VLPLCL-YVAYTDLALMKIINKAVVTLGAIYVILGPFVLPSIEAYLWGFAQFAIALGVGF 73 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 A MG GD K + A + L F I L +LT R Sbjct: 74 VLNAIGAMGAGDAKFIAFAAPFIAPGDLPRVVLLFTCI----LLAALLTHRGARASRLRD 129 Query: 134 GMFVPKSFLMKNKIPYGIAIS 154 S+ + P G+A+ Sbjct: 130 LAPDWVSWSQGKRFPLGLALG 150 >gi|83943931|ref|ZP_00956388.1| membrane protein, putative [Sulfitobacter sp. EE-36] gi|83845178|gb|EAP83058.1| membrane protein, putative [Sulfitobacter sp. EE-36] Length = 164 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 8/153 (5%) Query: 5 KMVFSAVFLIPPFCL---VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61 ++ SA PF L + +DL I N I + F+L + + ++ H Sbjct: 2 EITSSAALWFLPFALPLCAYTIYTDLAFMRITNVTVIALAAVFVLIGPIA-LPFDSYLWH 60 Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 LL ++ ++ A +MG GD K + + + FF+A+ L + Sbjct: 61 LLAMVVALVVGIFMNAGGLMGAGDAKFIAAA----TPFIALGDVRFFMALFMATLVAAYI 116 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAIS 154 R S+ K P G+A+ Sbjct: 117 IHRAAKYSPLRKLAPQWVSWHEAKKFPMGLALG 149 >gi|167463704|ref|ZP_02328793.1| hypothetical protein Plarl_14304 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384403|ref|ZP_08058089.1| hypothetical protein PL1_0935 [Paenibacillus larvae subsp. larvae B-3650] gi|321150761|gb|EFX44221.1| hypothetical protein PL1_0935 [Paenibacillus larvae subsp. larvae B-3650] Length = 155 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLV 64 M+ A L+ + A +SD+ ++ IPN ++I + + A + GM + + Sbjct: 1 MIQEACLLV---IICTAFVSDIRTSAIPNYITIGGLATGVIFQAAVYGMT--GLFQAITA 55 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 F++ + F +G GDVKL + W P LS + + + G + + IL R Sbjct: 56 TATGFLLLLLLYMFGALGAGDVKLFAAVGAW-SSIPFVLSSMMYSLLYAGFIGLGILLWR 114 Query: 125 M-ITNHIPIFGMFVPKSFLMK 144 +T M+ ++ L++ Sbjct: 115 RELTRRFFGLVMWFFRAILLR 135 >gi|225575017|ref|ZP_03783627.1| hypothetical protein RUMHYD_03098 [Blautia hydrogenotrophica DSM 10507] gi|225037768|gb|EEG48014.1| hypothetical protein RUMHYD_03098 [Blautia hydrogenotrophica DSM 10507] Length = 232 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 47/119 (39%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + S + + L+ A +D S +IP +++ + L+ L ++ L Sbjct: 71 LESGFYCLMASALLILAFTDWNSYLIPPEINLFLFCLGLVHLVLDWGEWPSYLLGAAGVG 130 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 I I F +GGGDVKL+ + + G+ +FL I S+ + R Sbjct: 131 IPLWIVFEISKGRSLGGGDVKLMAAVGLLLGFWRGTFTFLIACMAAAFIQSLCLSAGRK 189 >gi|229824692|ref|ZP_04450761.1| hypothetical protein GCWU000182_00040 [Abiotrophia defectiva ATCC 49176] gi|229791021|gb|EEP27135.1| hypothetical protein GCWU000182_00040 [Abiotrophia defectiva ATCC 49176] Length = 209 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 38/106 (35%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 V S +F + L+ + D + IP ++I +L L L + Sbjct: 58 VESVIFSLFTSALLVLTVIDWRTYEIPISINIFILVLGCLRVVLDFNHLRGYLIGFFAVS 117 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112 V + + +GGGD+KL+ + GW L F + Sbjct: 118 SVLFLIYILTKGRAIGGGDIKLMAVAGLLLGWQLVVLGFFIGCILA 163 >gi|54302293|ref|YP_132286.1| hypothetical protein PBPRB0613 [Photobacterium profundum SS9] gi|46915715|emb|CAG22486.1| hypothetical protein PBPRB0613 [Photobacterium profundum SS9] Length = 165 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 15/154 (9%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH-----LLVGLIVFIICF 73 +++AAL D+ IPN +V++ L A + ++ + H LL ++ + Sbjct: 6 VIYAALYDIRENKIPNHAIVVLIFLGLAQAIISSLEIGSLDFHYLTDALLGLIVGLFVSI 65 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT--------VRM 125 + G GD KLL + + G+ P+ L + + G LS+ ++ R Sbjct: 66 TLHYLGLFGAGDAKLLAALGIVVGF-PNILLLISMSVVFSGALSLLLMICKHEFIPNFRR 124 Query: 126 ITNHIPIFGMFVPKSFLMK-NKIPYGIAISMGGL 158 N I PK+ + N +P G AI + L Sbjct: 125 WANIIVYQFYQSPKADSIAINAVPMGGAILLATL 158 >gi|50083622|ref|YP_045132.1| type 4 prepilin-like proteins leader peptide processing enzyme [Acinetobacter sp. ADP1] gi|49529598|emb|CAG67310.1| type 4 prepilin-like proteins leader peptide processing enzyme (Protein secretion protein XCPA)[Includes: Leader peptidase (Prepilin peptidase); N-methyltransferase ] [Acinetobacter sp. ADP1] Length = 286 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+R ++ + G + +F + + +VG + I Sbjct: 138 LVLTWILIALTFIDFDTQLLPDRFTLTLAGLGLAVNSFTIYVSPTQAIWGYIVGFLCLWI 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G P L + ++ G + IL + Sbjct: 198 VYYIFKLITKKEGMGYGDFKLLAALGAWMG--PMMLPLIVLLSSCVGAIIGIILLRKRQE 255 Query: 128 NHIPIFG 134 N FG Sbjct: 256 NQPFAFG 262 >gi|52786668|ref|YP_092497.1| hypothetical protein BLi02936 [Bacillus licheniformis ATCC 14580] gi|163119575|ref|YP_080080.2| DNA-binding protein [Bacillus licheniformis ATCC 14580] gi|18266361|gb|AAL67522.1|AF459915_2 late competence protein ComC [Bacillus licheniformis] gi|52349170|gb|AAU41804.1| ComC [Bacillus licheniformis ATCC 14580] gi|145903084|gb|AAU24442.2| DNA-binding protein [Bacillus licheniformis ATCC 14580] Length = 249 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 + L L+ +SD+ +IP+ V L F + FL+ ++ +L + + Sbjct: 98 VIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGGML 157 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 + +G GDVKL + G L+F A G +L + L + + Sbjct: 158 PLLTLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAA-AGTVLGLIALLAGKLKKN 216 Query: 130 IPIF 133 P+ Sbjct: 217 EPMP 220 >gi|319647202|ref|ZP_08001424.1| late competence protein ComC [Bacillus sp. BT1B_CT2] gi|317390549|gb|EFV71354.1| late competence protein ComC [Bacillus sp. BT1B_CT2] Length = 249 Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 1/124 (0%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 + L L+ +SD+ +IP+ V L F + FL+ ++ +L + + Sbjct: 98 VIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGGML 157 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 + +G GDVKL + G L+F A G +L + L + + Sbjct: 158 PLLTLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAA-AGTVLGLIALLAGKLKKN 216 Query: 130 IPIF 133 P+ Sbjct: 217 EPMP 220 >gi|330816712|ref|YP_004360417.1| Peptidase A24A, prepilin type IV [Burkholderia gladioli BSR3] gi|327369105|gb|AEA60461.1| Peptidase A24A, prepilin type IV [Burkholderia gladioli BSR3] Length = 166 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 8/169 (4%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ I + A++D IPN + + L L++A + L ++G Sbjct: 1 MILLLSVGIFLAWVALVAIADFRYRRIPNSLVVAGLICALVSASTGHNPFGNPLLGAIIG 60 Query: 66 L-IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 + F+ F FFAF +MG DVK+ W G F ++F +++ GI ++ I+ + Sbjct: 61 AMVAFVGLFPFFAFRMMGAADVKVFVVLGAWCGVIQLFWCWVF-ASLVAGIHALGIMYLT 119 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173 + + PY + P + ++ Sbjct: 120 GASVRSLWQRNGAAFALGGFRGAPY------AAFLVIPAAAWLVFQIVT 162 >gi|298674644|ref|YP_003726394.1| peptidase A24B, FlaK domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287632|gb|ADI73598.1| Peptidase A24B, FlaK domain protein [Methanohalobium evestigatum Z-7303] Length = 255 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRV--SIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 +F PF L ++ SDL + +PN++ +++ G + L+ + + L+ + + Sbjct: 7 IFFFLPFLL-YSCYSDLKTRRVPNKLWSFMLVPGMIFVIYDLINYGFAHLVHLLISFVFI 65 Query: 69 FIICFCFFAFNIMGGGDVKLL 89 F + F+FN GG D KL+ Sbjct: 66 FGFVYVLFSFNAFGGADAKLM 86 >gi|258620852|ref|ZP_05715886.1| leader peptidase PilD [Vibrio mimicus VM573] gi|258586240|gb|EEW10955.1| leader peptidase PilD [Vibrio mimicus VM573] Length = 291 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 7/126 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLV 64 VF+ L + L+ A D + ++P+++++ +L + A L + + + Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTMLLPDQLTLPLLWGGIALALFGLSPVSLTDAVIGAMA 187 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + + +++G + + Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGLLFGLIQ 246 Query: 121 LTVRMI 126 L ++ Sbjct: 247 LRLQKQ 252 >gi|320352430|ref|YP_004193769.1| type 4 prepilin peptidase 1 [Desulfobulbus propionicus DSM 2032] gi|320120932|gb|ADW16478.1| type 4 prepilin peptidase 1 [Desulfobulbus propionicus DSM 2032] Length = 260 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 21/154 (13%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 V+ + L+ D+ +IP+R+S+ ++ F + + + ++ AL +L G + Sbjct: 102 LVYFVFSAALLVIIFIDIHHQIIPDRISLPGIVIGFAGSLVIDQITWQQSALGILFGGGI 161 Query: 69 FIIC----FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 MGGGD+KLL + GW S L +F ++ G ++ + Sbjct: 162 LYAVAWGYMALTKREGMGGGDIKLLAMIGAFLGW-QSLLYVIFSSSVAGCVVGGIAM--- 217 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 V + + +IP+G +++ L Sbjct: 218 ------------VKQGRGGQTRIPFGPFLAIAAL 239 >gi|260775492|ref|ZP_05884389.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260608673|gb|EEX34838.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 289 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 F+ L F L+ A D + ++P++++ ++ S + A L + + + + G Sbjct: 129 FAIALLFFTFVLIAATFIDFDTMLLPDQLTFPLIWSGIALALLDFSPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +++G + + L Sbjct: 189 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QYLPVIVLLSSLVGLVFGIIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|312136650|ref|YP_004003987.1| peptidase a24a domain protein [Methanothermus fervidus DSM 2088] gi|311224369|gb|ADP77225.1| Peptidase A24A domain protein [Methanothermus fervidus DSM 2088] Length = 372 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLT--AFLLGMDYELIALHLL 63 M+ + +I +AA SD +IPN+++ L LL A+ + M ++L Sbjct: 1 MIPTICVIIGIIVTFYAAYSDFKWGIIPNKLTFSTLLLGLLLNTAWAVMMSNIPFLTNML 60 Query: 64 VGLI-VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109 + + VF IC+ F+ GGDVKLLT+ A + S Sbjct: 61 IFVGSVFAICYFFYWIGAWSGGDVKLLTALAALVPYRYSITDVTVTA 107 >gi|327401464|ref|YP_004342303.1| peptidase A24B, FlaK domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316972|gb|AEA47588.1| Peptidase A24B, FlaK domain protein [Archaeoglobus veneficus SNP6] Length = 234 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 2/145 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLV 64 M+ + L+ A DL +PNR+ +ML FL + + + L Sbjct: 1 MIALIKIAVALVFLLEACKMDLKERRVPNRLWKLMLLVFLPLDIIEYYLQPFSLTFALFQ 60 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 V C+ + + GG D K + A+ F PSF F LG +L+ L Sbjct: 61 FAFVAAFCYALYYLGLYGGADAKAIMCLAIAFPAYPSFFVFPLLNEGLG-MLAFTTLANS 119 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149 ++ + + V + + PY Sbjct: 120 VLAAPFLVAVLLVRNALSGNLEFPY 144 >gi|262170628|ref|ZP_06038306.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio mimicus MB-451] gi|261891704|gb|EEY37690.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio mimicus MB-451] Length = 291 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 7/120 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65 F+ L+ + L+ A DL + ++P+++++ +L + A L + + +VG Sbjct: 129 FAVAALLFSYVLIAATFIDLDTMLLPDQLTLPLLWGGIALALFGLSPVPLTDAVIGAMVG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + + +++G I + L Sbjct: 189 YLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQL 247 >gi|187923642|ref|YP_001895284.1| peptidase A24A prepilin type IV [Burkholderia phytofirmans PsJN] gi|187714836|gb|ACD16060.1| peptidase A24A prepilin type IV [Burkholderia phytofirmans PsJN] Length = 166 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 2/153 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLV 64 M S + A+ D I N V + + +F F G + + Sbjct: 1 MNVSVGIFLFIAWAAVVAIGDCRRRRISNSVVLAGLAAAFCCALFQCGPFGISLTQSGIG 60 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 LI FFA +MG DVK+ W G + L ++ + ++++L Sbjct: 61 ALIGLAALLPFFALGVMGAADVKVFAVLGAWCGM-HALLGLWMAASLAASVHALWLLITT 119 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157 K PY +++ Sbjct: 120 RTRLASLARQPGATFELAGKASTPYAACLAVAA 152 >gi|148263857|ref|YP_001230563.1| peptidase A24A domain-containing protein [Geobacter uraniireducens Rf4] gi|146397357|gb|ABQ25990.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Geobacter uraniireducens Rf4] Length = 263 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 6/129 (4%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 + LV DL +IP+ +S+ ++ F + L + ++ + +L+G Sbjct: 103 LFLFLFCSALVVITFIDLEHQIIPDVISLPGIVIGFAASFLLPWLGWKNSLIGILIGGGS 162 Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 +I + F MGGGD+KLL + GW S +F +++G I+ + ++ V+ Sbjct: 163 LLIVAYGYQFLTKKEGMGGGDIKLLAMMGAFLGWR-SVPFIIFVASLVGSIIGITLMVVQ 221 Query: 125 MITNHIPIF 133 + + I Sbjct: 222 KKDSKLAIP 230 >gi|260574608|ref|ZP_05842611.1| peptidase A24A prepilin type IV [Rhodobacter sp. SW2] gi|259023025|gb|EEW26318.1| peptidase A24A prepilin type IV [Rhodobacter sp. SW2] Length = 166 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 11/157 (7%) Query: 6 MVFSAVFLIPPFCL---VFAALSDLFSAMIPNRVSIVMLGSFLL----TAFLLGMDYELI 58 M + + PF L V+ A SD+ IPN+ + + +L+ + + Sbjct: 1 MTPTVALTLLPFVLPIAVWVAWSDMKFMKIPNKAVLALAAVYLVVGGGLVAFGALGLKTW 60 Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 +G IV + F ++G GD K + A +F L F A L Sbjct: 61 GWGWALGAIVLGVGFVVTILKMVGAGDAKFAAAMAPFFVGGDLRFVLLLFSA----CLIA 116 Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155 + R + + M K P G+A+S Sbjct: 117 AFVGHRAMRALPAVRRMTPDWESWTHAKFPMGLALSA 153 >gi|310640819|ref|YP_003945577.1| peptidase a24a prepilin type iv [Paenibacillus polymyxa SC2] gi|309245769|gb|ADO55336.1| Peptidase A24A prepilin type IV [Paenibacillus polymyxa SC2] Length = 170 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 2/117 (1%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 ++++ L A ++DL S IPN++++ + LL L G + + F Sbjct: 4 MYIVCGVLLAIALVTDLRSMKIPNKLTLPGIAVGLLFNTLFG-GWHGFLFAIAGLGTGFG 62 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + +G GDVKL W G ++ S L + GI+ + IL R T Sbjct: 63 FMLILYWMGAIGAGDVKLFGLIGAWTGAAFAWQSAL-YSIFFAGIIGIGILLWRRET 118 >gi|297618083|ref|YP_003703242.1| peptidase A24A prepilin type IV [Syntrophothermus lipocalidus DSM 12680] gi|297145920|gb|ADI02677.1| peptidase A24A prepilin type IV [Syntrophothermus lipocalidus DSM 12680] Length = 170 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 I L A D+ IPN + + + + L G + + L + ++ Sbjct: 4 IMVGLLALAVYFDVRERRIPNWLVLTGVLTALGWHLYQG-GFSGLVFSLKGLGLGLLLLM 62 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 FA MG GDVKLL + G F +FL ++A++GG++++ +L Sbjct: 63 LPFAMGGMGAGDVKLLGMVGAFKGVVFVFNAFL-WMALIGGLIALAVLI 110 >gi|323489980|ref|ZP_08095201.1| type 4 prepilin-like proteins leader peptide processing enzyme [Planococcus donghaensis MPA1U2] gi|323396276|gb|EGA89101.1| type 4 prepilin-like proteins leader peptide processing enzyme [Planococcus donghaensis MPA1U2] Length = 251 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 60/149 (40%), Gaps = 16/149 (10%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ LV +SD+ +IP++V + + F++ +D +L + Sbjct: 104 ILFVSLLVIITVSDIAYMLIPDKVLLPFAVVLIGLRFVIPLDPWWNSLLGAAVGFSLLFL 163 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 + MGGGD+KL + G + ++ LFF + +G ++ + L + P Sbjct: 164 IAIVSKGGMGGGDIKLFFVIGLVLGLGGTLMT-LFFASFIGAVVGIIQLRITKKGRKSP- 221 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161 IP+G +I+ +I Y Sbjct: 222 --------------IPFGPSIAAAAIIVY 236 >gi|213536331|gb|ACJ51077.1| prepilin peptidase [Vibrio vulnificus] Length = 289 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVG 65 + + L+ A DL + ++P+++++ + + + A L + + + + G Sbjct: 129 ITVALIGLTLVLIAATFIDLDTMLLPDQLTLPLTWAGIALALLEISPVSLQDSVIGAMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + +I+G I + L Sbjct: 189 YLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGW-QYLPMIILLSSIVGLIFGLIQL 247 Query: 122 TVRMI 126 ++ Sbjct: 248 RLQKQ 252 >gi|260220288|emb|CBA27676.1| Type 4 prepilin-like proteins leader peptide-processing enzyme [Curvibacter putative symbiont of Hydra magnipapillata] Length = 258 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 7/113 (6%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGLIVFII 71 + CLV AL D + ++P+ +++ ++ L+ A L + + G + Sbjct: 108 VFSACLVTLALIDWDTTLLPDDITLPLVWLGLVAAALQWTPVGLSTALWGAVAGYLSLWS 167 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 + F MG GD KL + WFGW P + + +++G I+ + + Sbjct: 168 IYWLFKLVTGKEGMGYGDFKLFAALGAWFGW-PVLIPMILMASVIGAIVGIAM 219 >gi|296133926|ref|YP_003641173.1| peptidase A24A prepilin type IV [Thermincola sp. JR] gi|296032504|gb|ADG83272.1| peptidase A24A prepilin type IV [Thermincola potens JR] Length = 184 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 2/108 (1%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 D+ I N +++ L T + G + + L+ + + N+MG Sbjct: 22 YYDIREQKIKNFITLPAAVLGLATNLMEG-GLTGLLFSIKGWLVPVAVLMVLYRINVMGA 80 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 GD+KL + G + SF+F V GG++++ IL + + Sbjct: 81 GDIKLFAAIGAVMGLPFTAYSFVFSV-YTGGVIALVILLKKRVFIRRM 127 >gi|157960240|ref|YP_001500274.1| prepilin peptidase [Shewanella pealeana ATCC 700345] gi|157845240|gb|ABV85739.1| Prepilin peptidase [Shewanella pealeana ATCC 700345] Length = 303 Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 21/161 (13%) Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLL 63 + A+ + FCL+ DL ++P+++++ +L ++ + Sbjct: 144 PTLEFALTALLTFCLIALTGIDLDEMLLPDQITLPLLWLGLIINLGGTFATTSDALIGAA 203 Query: 64 VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 G + F F + MG GD KLL WFGW L + +++G ++ + Sbjct: 204 AGYLSLWCVFWLFKLLTGKDGMGYGDFKLLAVFGAWFGWQVLPL-VILLSSLVGAVVGIA 262 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 ++ + + + P IP+G I+ G I+ Sbjct: 263 LIVFKKLNHGNP---------------IPFGPYIAAAGWIA 288 >gi|147677781|ref|YP_001211996.1| type II secretory pathway, prepilin signal peptidase PulO and related peptidases, prepilin signal peptidase PulO and related peptidases [Pelotomaculum thermopropionicum SI] gi|146273878|dbj|BAF59627.1| type II secretory pathway, prepilin signal peptidase PulO and related peptidases, prepilin signal peptidase PulO and related peptidases [Pelotomaculum thermopropionicum SI] Length = 170 Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 18/161 (11%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 LV L+DL + I N V + L L T G + L+ + F F Sbjct: 9 IVLVVCTLTDLCNKKIYNFVLLPALVIALFTHLATG-GLPQGWWSVKGLLLGIALLFIPF 67 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT-------------- 122 + +G GDVK+L G F +FL A+ GGI+S +L Sbjct: 68 SAGGIGAGDVKMLGVIGALKGPEFVFKAFL-AGAVAGGIISAALLIKNKKMLATVQLLLL 126 Query: 123 -VRMITNHIPIFGMFVPKSFLMK-NKIPYGIAISMGGLISY 161 + +P + + N IPYG AI++G L +Y Sbjct: 127 NLYFFLTGVPRIKYRAESPDIPQENVIPYGAAIAIGTLAAY 167 >gi|188592029|ref|YP_001796627.1| prepilin peptidase transmembrane protein [Cupriavidus taiwanensis LMG 19424] gi|170938403|emb|CAP63390.1| putative PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 157 Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 4/151 (2%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 +I +D +PN + + + + L +A L + + Sbjct: 1 MIAALLCAATLYTDFAYRRVPNLLLAIAVLALGLALIAGQATEPPLAARLTGAGLGLAVT 60 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH--- 129 +A M GDVK LT ++ G ++++ + + + R Sbjct: 61 LPVYALGRMAAGDVKFLTVAGLFTGPQGLVVAWVVGSLLGLVHALLALALARRTPAADHA 120 Query: 130 -IPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 + F + IPY +++G L Sbjct: 121 LHSQAPSLLTAQFSLARGIPYAAYLAVGVLA 151 >gi|288553595|ref|YP_003425530.1| aspartate peptidase [Bacillus pseudofirmus OF4] gi|288544755|gb|ADC48638.1| peptidase A24A domain protein, aspartate peptidase [Bacillus pseudofirmus OF4] Length = 253 Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 17/139 (12%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82 +SD+ +IP+++ + FLL + +D +L ++ + MG Sbjct: 116 VSDIRYMLIPDKILLFFTPFFLLLRLTVAPLDPWWSSLVGAAVGFGLLLLIAVISRGGMG 175 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL 142 GGD+KL + GW L+F F + G I++ + + Sbjct: 176 GGDIKLFAVLGLVLGWQDVLLAFFFSC-LYGTIIAGIGMAAGKVKR-------------- 220 Query: 143 MKNKIPYGIAISMGGLISY 161 K IP+G I +G L +Y Sbjct: 221 -KKPIPFGPFIVLGALTAY 238 >gi|109810283|gb|ABC11892.2| PilD [Aliivibrio fischeri] Length = 295 Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 7/124 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 F+ ++ L+ D+ + ++P ++++ +L S L A + L+ + Sbjct: 133 FAXAAVLFTLVLIALTFIDIDTMLLPEQITLPLLWSGLYLALVGWSSVSLVDSVVGAMAG 192 Query: 68 VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 I+ ++ F + MG GD KLL + W GW L + +++G I+ V +L Sbjct: 193 YLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPL-XILLSSVVGAIIGVIML 251 Query: 122 TVRM 125 T + Sbjct: 252 TAQK 255 >gi|332560329|ref|ZP_08414651.1| Peptidase A24A, prepilin type IV [Rhodobacter sphaeroides WS8N] gi|332278041|gb|EGJ23356.1| Peptidase A24A, prepilin type IV [Rhodobacter sphaeroides WS8N] Length = 167 Score = 43.7 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 5/153 (3%) Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62 + + ++ A SD+ IPN+ + + FL+ ++ + + Sbjct: 7 TPAPAAAVFLPLVLPIALWVAWSDMKFMKIPNKAVLALAAVFLVAGPVV-LPLDDWLWRW 65 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 L L+V + F ++G GD K + A + L+ F A L G + + Sbjct: 66 LHLLVVLAVGFLMNMGRLIGAGDAKFAAAMAPFVALEDLRLALALFAASLLGAFA----S 121 Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155 R + P + P G+A++ Sbjct: 122 HRGLGLLGPFRRATADWESWRRRDFPMGLALAG 154 >gi|169827250|ref|YP_001697408.1| type 4 prepilin-like proteins leader peptide processing enzyme [Lysinibacillus sphaericus C3-41] gi|168991738|gb|ACA39278.1| Type 4 prepilin-like proteins leader peptide-processing enzyme (Late competence protein comC) [Lysinibacillus sphaericus C3-41] Length = 248 Score = 43.7 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 18/156 (11%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65 + V L LV +SD +IP+++ + L ++ L + + L LVG Sbjct: 96 MEFIVALSFISLLVIIVVSDFTYLLIPDKILLFFLPILVIGRVLSPLTPWWDSLLGSLVG 155 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + + MGGGD+KL + G + L+ LF AI+G I+ + +L R Sbjct: 156 FGILYSIAVL-SKGGMGGGDIKLFFLIGLVLGTIHTLLT-LFLAAIIGMIVGIVVLLKRK 213 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 P IP+G +I++ I Y Sbjct: 214 QGRKTP---------------IPFGPSIALAANIVY 234 >gi|291529318|emb|CBK94904.1| type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family A24A [Eubacterium rectale M104/1] Length = 253 Score = 43.7 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 6/143 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + S ++ L+ ++ D + IP ++I +L +L FL ++ + Sbjct: 101 LTSIIYCFLTSALIVLSVIDWRTYEIPFGINIFILVLGILHVFLDHDNWSEYVIGFFCVS 160 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV--- 123 + I +GGGDVKL+ + GW L+F I+G ++ + + V Sbjct: 161 LFLEILLLVSGGRAIGGGDVKLMACAGLAIGWQNITLAFFLGC-IIGSVIHLIRMKVTNA 219 Query: 124 --RMITNHIPIFGMFVPKSFLMK 144 R+ G+F+ + K Sbjct: 220 GNRLAMGPYLATGIFISMLWGEK 242 >gi|317471421|ref|ZP_07930773.1| peptidase A24 domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901036|gb|EFV22998.1| peptidase A24 domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 258 Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 1/117 (0%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 ++ + LI L D+ + IPN + + ++ FL + + Sbjct: 104 LLKTVFLLITGALLTAVTFVDIDTMEIPNGFVLALACLGAVSLFLFPEVSLPMRVIGCFA 163 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + V ++ GGGD+KL+ + + G + +F F V + GG+ +++L Sbjct: 164 VSVPMLLLTVLIPGAFGGGDIKLMAAAGILLGAKLTGTAFFFSV-LAGGVYGIYLLA 219 >gi|289209346|ref|YP_003461412.1| prepilin peptidase [Thioalkalivibrio sp. K90mix] gi|288944977|gb|ADC72676.1| Prepilin peptidase [Thioalkalivibrio sp. K90mix] Length = 296 Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 6/130 (4%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFL-LTAFLLGMDYELIALHLLVGLI 67 + + LI L+ AA D + ++P+++++ +L L + D + + G + Sbjct: 140 ALLALIFTGVLIAAAGIDARTTLLPDQLTLPLLWLGLLVNIPGTFTDLQSAVIGAAAGYL 199 Query: 68 VFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 V + F F MG GD KLL + W GW + L +++G ++ + ++ + Sbjct: 200 VLWLIFHGFRLATGKEGMGYGDFKLLAALGAWLGW-QALPVILLLASLVGAVVGILLILL 258 Query: 124 RMITNHIPIF 133 R +IPI Sbjct: 259 RGRDRNIPIP 268 >gi|291525222|emb|CBK90809.1| type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family A24A [Eubacterium rectale DSM 17629] Length = 253 Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 6/143 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + S ++ L+ ++ D + IP ++I +L +L FL ++ + Sbjct: 101 LTSIIYCFLTSALIVLSVIDWRTYEIPFGINIFILVLGILHVFLDHDNWSEYVIGFFCVS 160 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV--- 123 + I +GGGDVKL+ + GW L+F I+G ++ + + V Sbjct: 161 LFLEILLLVSGGRAIGGGDVKLMACAGLAIGWQNITLAFFLGC-IIGSVIHLIRMKVTNA 219 Query: 124 --RMITNHIPIFGMFVPKSFLMK 144 R+ G+F+ + K Sbjct: 220 GNRLAMGPYLAAGIFISMLWGEK 242 >gi|330446855|ref|ZP_08310506.1| type IV leader peptidase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491046|dbj|GAA05003.1| type IV leader peptidase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 289 Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 9/131 (6%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM--LGSFLLTAFLLGMDYELIALHLLVGL 66 S + F L+ D+ ++P+++++ + G L A + + + + G Sbjct: 130 SQAVIFFTFALIALTFIDIDKMLLPDQITLPLMWAGIVLSVAGISPVSLTDSVIGAMAGY 189 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSF-LFFVAILGGILSVFIL 121 + F F + MG GD KLL + W GW L F + +++G + + +L Sbjct: 190 LSLWSVFWVFKLLTKKDGMGYGDFKLLAALGAWLGW--QLLPFVVLLSSLVGALCGLVLL 247 Query: 122 TVRMITNHIPI 132 ++ N P Sbjct: 248 KMQDADNQTPF 258 >gi|167622408|ref|YP_001672702.1| prepilin peptidase [Shewanella halifaxensis HAW-EB4] gi|167352430|gb|ABZ75043.1| Prepilin peptidase [Shewanella halifaxensis HAW-EB4] Length = 303 Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 21/161 (13%) Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLL 63 + A+ + FCLV DL ++P+++++ +L ++ + Sbjct: 144 PTLEFALTSLLTFCLVALTGIDLDEMLLPDQITLPLLWLGLIINLSGTFATTSDALIGAA 203 Query: 64 VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 G + F F + MG GD KLL WFGW L + +++G ++ + Sbjct: 204 AGYLSLWSVFWLFKLLTGKDGMGYGDFKLLAVFGAWFGWQVLPL-VILLSSLVGAVVGIA 262 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 ++ + + + P IP+G I+ G I+ Sbjct: 263 LIVFKKLNHGNP---------------IPFGPYIAAAGWIA 288 >gi|126461323|ref|YP_001042437.1| peptidase A24A, prepilin type IV [Rhodobacter sphaeroides ATCC 17029] gi|126102987|gb|ABN75665.1| peptidase A24A, prepilin type IV [Rhodobacter sphaeroides ATCC 17029] Length = 167 Score = 43.3 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 5/153 (3%) Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62 + + ++ A SD+ IPN+ + + FL+ ++ + + Sbjct: 7 TPAPAAAVFLPLVLPIALWVAWSDMKFMKIPNKAVLALAAVFLVAGPVV-LPLDDWLWRW 65 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 L L+V + F ++G GD K + A + L+ F A L G + + Sbjct: 66 LHLLVVLVAGFLMNMGRLIGAGDAKFAAAMAPFVALEDLRLALALFAASLLGAFA----S 121 Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155 R + P + P G+A++ Sbjct: 122 HRGLGLLEPFRRATADWESWRRRDFPMGLALAG 154 >gi|300692329|ref|YP_003753324.1| prepilin peptidase transmembrane protein [Ralstonia solanacearum PSI07] gi|299079389|emb|CBJ52060.1| putative prepilin peptidase transmembrane protein [Ralstonia solanacearum PSI07] Length = 175 Score = 43.3 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 15/163 (9%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L + AA+ D+ + +PN + I L LL L LL + Sbjct: 10 LSLAALVTTAAVWDVRTRRVPNWLVISGLAIALLVQCLEHGVLTGSWTWLLGTATGLGLL 69 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 + MG GDVKL+ + + I+GG L++ ++ +R + Sbjct: 70 LGIYLLGGMGAGDVKLMGAVGAFMAPA-GVFHVALVTFIVGGALALAMMLMRGNAHRSFA 128 Query: 133 FGMFVPKSF--------------LMKNKIPYGIAISMGGLISY 161 + S ++PY +AI++G L+ Sbjct: 129 NVSALLLSLPFGGKTTAAGQDKKDRTTRLPYAVAIAIGTLLVL 171 >gi|221067358|ref|ZP_03543463.1| peptidase A24A prepilin type IV [Comamonas testosteroni KF-1] gi|220712381|gb|EED67749.1| peptidase A24A prepilin type IV [Comamonas testosteroni KF-1] Length = 196 Score = 43.3 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 19/154 (12%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY-ELIALHLLVGLIVFIICFCFFAFNIMG 82 +SDL + IPNR++ + LL L + L + ++ + + MG Sbjct: 34 ISDLRTRRIPNRLTFGGIALALLYGLLAPHPHGGGFFWALGGMALGLVLMLPLYLLHAMG 93 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF- 141 GGDVKL+ + G + + FV I GG+ ++ + + + Sbjct: 94 GGDVKLMAMVGSFIGP-EATWQAVIFVFITGGVAAIGYALWHRMAGKLLRNSAEAVQLLY 152 Query: 142 ----------------LMKNKIPYGIAISMGGLI 159 K+PYG++I++G L Sbjct: 153 INVAAGIAPDARSSSAHSVGKLPYGVSIALGTLA 186 >gi|290559758|gb|EFD93082.1| peptidase A24A prepilin type IV [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 276 Score = 43.3 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 83/189 (43%), Gaps = 24/189 (12%) Query: 6 MVFSAVFLIPPFC---LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62 MV+S +LI F L+ A+++D+ +P+ +S V++ L + I+ + Sbjct: 1 MVYSINYLIFIFVIGVLILASITDIKKREVPDSISYVLIAGSSLLVLAYSISNNTISNLV 60 Query: 63 LVGLIVFIIC---FCFFAFNIMGGGDVKLLTSTAVWFG---------WTPSFLSFLFFVA 110 + L + ++ + + GGGDVK+L ++ F + F++ L F Sbjct: 61 YMPLSILLVTGFSYFMYKAGQWGGGDVKILFGISIVFTSINLFSNRSFIALFINILLFGG 120 Query: 111 ILG--GILSVFILTVRMITNHIPIFGMFVPKSFLMKN-------KIPYGIAISMGGLISY 161 I G G ++V ++ ++ + NH ++ + L+ +P I++ + + Sbjct: 121 IYGILGTIAVGVIKIKKLKNHFKVYDIPFFIVTLLTMVLSFFFIPVPLNFFIAIAAFMLF 180 Query: 162 PDSYLFKVA 170 ++F VA Sbjct: 181 SMRFVFLVA 189 >gi|301165537|emb|CBW25108.1| putative membrane protein [Bacteriovorax marinus SJ] Length = 168 Score = 43.3 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 V+L L F A D+ I N ++ + +LL+ F Y + + FI Sbjct: 5 VYLFLVVQLFFVASHDVTHKKISNFWPLINISFYLLSVFFFPDHYNFGWSTFVFPIAFFI 64 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFF---VAILGGILSVFILTVRMIT 127 + F IMG GD K L S + + +F+F ++G L + + R Sbjct: 65 VGIFLFTLKIMGAGDSKYLLSFYLLIPVSLHETAFIFLAYSTVVVGLSLLLTNIIKRSDI 124 Query: 128 NHIPI 132 + I Sbjct: 125 IKLAI 129 >gi|296158791|ref|ZP_06841620.1| peptidase A24A prepilin type IV [Burkholderia sp. Ch1-1] gi|295890996|gb|EFG70785.1| peptidase A24A prepilin type IV [Burkholderia sp. Ch1-1] Length = 166 Score = 43.3 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 2/146 (1%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FII 71 L+ A+SD I N + + L + A + + +G ++ Sbjct: 8 LLFVAWAAVVAISDCRWRRISNSIVVAGLAAAFGCALFQCGPFGISPARAGIGALIGLAA 67 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 FFA +MG DVK+ W G + ++ G+ ++++L Sbjct: 68 LLPFFALGVMGAADVKIFAVLGAWCGM-HALPGLWMAASLAAGVHALWLLITTRTRLAGL 126 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGG 157 + K PY ++ Sbjct: 127 VRQSGSTFELAGKASTPYAACLTAAA 152 >gi|167746590|ref|ZP_02418717.1| hypothetical protein ANACAC_01300 [Anaerostipes caccae DSM 14662] gi|167653550|gb|EDR97679.1| hypothetical protein ANACAC_01300 [Anaerostipes caccae DSM 14662] Length = 258 Score = 43.3 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 1/117 (0%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 ++ + LI L D+ + IPN + + ++ FL + + Sbjct: 104 LLKTVFLLITGALLTAVTFVDIDTMEIPNGFVLALACLGAVSLFLFPEISLPMRVIGCFA 163 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + V ++ GGGD+KL+ + + G + +F F V + GG+ +++L Sbjct: 164 VSVPMLLLTVLIPGAFGGGDIKLMAAAGILLGAKLTGAAFFFSV-LAGGVYGIYLLA 219 >gi|194017199|ref|ZP_03055811.1| putative A24 family unassigned peptidase [Bacillus pumilus ATCC 7061] gi|194011067|gb|EDW20637.1| putative A24 family unassigned peptidase [Bacillus pumilus ATCC 7061] Length = 239 Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 1/111 (0%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 S +I V A +SDL +PN + + F++ L + L+ Sbjct: 95 FESLFLVILCSLFVIAVVSDLLYMRVPNELFLFFFPLFVIYRTLEPLLIWWEGAASLIFC 154 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117 I+ +F N +GG D+KL + A FG+ P L LF I G + + Sbjct: 155 ILLFSSLDYFKPNSLGGADMKLFSVLAFCFGFKPFLL-MLFLSCIAGMVYA 204 >gi|238924538|ref|YP_002938054.1| prepilin peptidase [Eubacterium rectale ATCC 33656] gi|238876213|gb|ACR75920.1| prepilin peptidase [Eubacterium rectale ATCC 33656] Length = 253 Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 6/143 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + S ++ L+ ++ D + IP ++I +L +L FL ++ + Sbjct: 101 LTSIIYCFLTSALIVLSVIDWRTYEIPLGINIFILVLGILHVFLDHDNWSEYVIGFFCVS 160 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV--- 123 + I +GGGDVKL+ + GW L+F I+G ++ + + V Sbjct: 161 LFLEILLLVSGGRAIGGGDVKLMACAGLAIGWQNITLAFFLGC-IIGSVIHLIRMKVTNA 219 Query: 124 --RMITNHIPIFGMFVPKSFLMK 144 R+ G+F+ + K Sbjct: 220 GNRLAMGPYLAAGIFISMLWGEK 242 >gi|84385707|ref|ZP_00988738.1| putative membrane protein [Vibrio splendidus 12B01] gi|84379687|gb|EAP96539.1| putative membrane protein [Vibrio splendidus 12B01] Length = 147 Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 16/147 (10%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 + + C + +D++ + +R I+++ +++ + + LI+F Sbjct: 8 LSIAISICNLIVFYNDIYFRTVKHRFIIIIIILGVISLVFS----NNVIWQIGASLIIFC 63 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + F + NI+GGGDVKL+ + + S ++ L ILGG+ + + +IT+ Sbjct: 64 VFFMLWMMNIIGGGDVKLIGALFIGIAPEYSIIA-LATAGILGGVQILLMWVSSLITHKD 122 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGG 157 P N IPY I + + G Sbjct: 123 PF-----------SNGIPYTIPLGLSG 138 >gi|261211522|ref|ZP_05925810.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio sp. RC341] gi|260839477|gb|EEX66103.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio sp. RC341] Length = 291 Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 7/121 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64 VF+ L + L+ A DL + ++P+++++ +L + A L + + + Sbjct: 128 VFAVALLFFSYVLIAATFIDLDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + + +++G I + Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246 Query: 121 L 121 L Sbjct: 247 L 247 >gi|77919733|ref|YP_357548.1| prepilin peptidase [Pelobacter carbinolicus DSM 2380] gi|77545816|gb|ABA89378.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Pelobacter carbinolicus DSM 2380] Length = 259 Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 6/128 (4%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGL--- 66 V+ + +V + DL +IP+ +S+ ++ FLL+ + + ++ L +L+G Sbjct: 103 VYWLFVASMVTISFIDLDHKIIPDVISLPGIVLGFLLSFAVPWLTWQDSILGILLGGGSL 162 Query: 67 -IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +V + + MGGGDVKLL + GW + L +F ++ G ++ V ++ + Sbjct: 163 YLVAKVYYWMTHVEGMGGGDVKLLAMIGAFLGW-KAILPVIFLGSLSGALVGVPLMLYKR 221 Query: 126 ITNHIPIF 133 + I Sbjct: 222 AGGKLAIP 229 >gi|323495862|ref|ZP_08100930.1| Type II secretory pathway, prepilin signal peptidase PulO [Vibrio sinaloensis DSM 21326] gi|323319078|gb|EGA72021.1| Type II secretory pathway, prepilin signal peptidase PulO [Vibrio sinaloensis DSM 21326] Length = 200 Score = 43.3 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 7/124 (5%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66 S L F L+ A DL + ++P+ +++ ++ + + A + + + + + G Sbjct: 41 SMALLFFTFTLIAATFIDLDTMLLPDSLTLPLMWTGITLALVGISPISLQNAVIGAIAGY 100 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + + F + MG GD KLL + W GW + + F +++G +L + L Sbjct: 101 LSLWSVYWLFKLITGKDGMGYGDFKLLAALGAWLGWQQLPM-IILFSSLVGLVLGLIQLR 159 Query: 123 VRMI 126 ++ Sbjct: 160 LKRQ 163 >gi|254521133|ref|ZP_05133188.1| family A24A unassigned peptidase [Stenotrophomonas sp. SKA14] gi|219718724|gb|EED37249.1| family A24A unassigned peptidase [Stenotrophomonas sp. SKA14] Length = 176 Score = 43.3 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 3/111 (2%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL--IALHLLVGLIVFIICFCFFAFNI 80 A+SDL++ +PN + + H+ + + F+A Sbjct: 11 AISDLYARRVPNAWLLAACALAVPLLIAGQFSTPRLPWGSHVAGAALGLVALLPFYAVRW 70 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 MG GDVK + + L ++ G+ ++ +L R + +P Sbjct: 71 MGAGDVKFFAVLGL-LLGLEALLPIWVTASLGAGLHALVVLASRRLGPMLP 120 >gi|293400855|ref|ZP_06645000.1| leader peptidase (prepilin peptidase) [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305881|gb|EFE47125.1| leader peptidase (prepilin peptidase) [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 231 Score = 43.0 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 12/130 (9%) Query: 12 FLIPPFCLVFAALS--DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 +I ++F A++ D + IPN + I ++ + A L+ + + I L L G+ F Sbjct: 79 LIIFSVIMIFLAITMIDFDTMTIPNGLIIALV----VPAVLMTILHPEITL-LERGIGFF 133 Query: 70 IICFCFFAFNIM-----GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 I+ + +M GGGD+KLL + GW L V G S ++T + Sbjct: 134 IVSLPMYLLTLMIPDCFGGGDIKLLAVSGFMIGWKGILLGAFIGVLTCGCYASWLLITKK 193 Query: 125 MITNHIPIFG 134 FG Sbjct: 194 TQKGAHIAFG 203 >gi|262404738|ref|ZP_06081293.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio sp. RC586] gi|262349770|gb|EEY98908.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio sp. RC586] Length = 291 Score = 43.0 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 7/121 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64 VF+ L + L+ A DL + ++P+++++ +L + A L + + + Sbjct: 128 VFTVALLFFSYVLIAATFIDLDTMLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + +++G I + Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGW-QLLPVIVLLSSVVGVIFGLIQ 246 Query: 121 L 121 L Sbjct: 247 L 247 >gi|319789518|ref|YP_004151151.1| Prepilin peptidase [Thermovibrio ammonificans HB-1] gi|317114020|gb|ADU96510.1| Prepilin peptidase [Thermovibrio ammonificans HB-1] Length = 255 Score = 43.0 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Query: 23 ALSDLFSAMIPNRVS--IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII--CFCFFAF 78 A DL + +P ++S ++ G FL + ++ G+I+FII + F Sbjct: 113 AFIDLDTMEVPVKLSYFALLAGLFLSIPASIKFVDSMLGASFGAGVILFIIETYYVFTGK 172 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 MG GD ++ + GW L+ LFF ++ G +L V ++ +R + P+ Sbjct: 173 EGMGYGDANIMAVIGAFLGWKKVLLT-LFFASLTGAVLGVTLMALRKSSKEQPLP 226 >gi|83954504|ref|ZP_00963215.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1] gi|83840788|gb|EAP79959.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1] Length = 164 Score = 43.0 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 5/135 (3%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79 + +DL I N I + F+L + + ++ HLL +I ++ A Sbjct: 20 AYTIYTDLAFMRITNVTVIALAAVFVLIGPIA-LPFDSYLWHLLAMVIALVVGIFMNAGG 78 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139 +MG GD K + + + F +A+ L + R Sbjct: 79 LMGAGDAKFIAAA----TPFIALGDVRFVMALFMATLVAAYIIHRAAKYSPLRKLAPQWV 134 Query: 140 SFLMKNKIPYGIAIS 154 S+ K P G+A+ Sbjct: 135 SWHEAKKFPMGLALG 149 >gi|134281870|ref|ZP_01768577.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305] gi|134246932|gb|EBA47019.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 305] Length = 179 Score = 43.0 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 16/161 (9%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L V AA DL S IPNR+ + L L+ L + A L + Sbjct: 12 LCVTLLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAGLL 71 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI------ 126 F+ M GDVKL+ + W G T L ++GG ++ ++ R Sbjct: 72 LPFYLVRGMAAGDVKLMLAIGAWVGPT-LALHIALATFVVGGAWALAVVARRGRFRKLLA 130 Query: 127 ---------TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 +PYG+AI++G L Sbjct: 131 NLRHLFAGAALPRVASAARAAPEIDSVGMLPYGVAIAIGTL 171 >gi|149181788|ref|ZP_01860279.1| leader peptide processing enzyme [Bacillus sp. SG-1] gi|148850529|gb|EDL64688.1| leader peptide processing enzyme [Bacillus sp. SG-1] Length = 204 Score = 43.0 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 16/138 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 +SD+ +IP++V + G FLL L+ + +L ++ + MGG Sbjct: 66 VSDIKYMIIPDKVLLFFSGLFLLERILIPLGSRWDSLAGAALGFGLLLLIAVISKGGMGG 125 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KL G P LSF + G ++ + L F Sbjct: 126 GDIKLYALIGFVLGVKPMLLSFFLAT-LFGAVIGIIGLA---------------AGFFER 169 Query: 144 KNKIPYGIAISMGGLISY 161 K IP+G I++G LISY Sbjct: 170 KKPIPFGPFIAVGTLISY 187 >gi|28199789|ref|NP_780103.1| pre-pilin leader peptidase [Xylella fastidiosa Temecula1] gi|71275173|ref|ZP_00651460.1| Prepilin peptidase [Xylella fastidiosa Dixon] gi|71898254|ref|ZP_00680428.1| Prepilin peptidase [Xylella fastidiosa Ann-1] gi|71899810|ref|ZP_00681960.1| Prepilin peptidase [Xylella fastidiosa Ann-1] gi|170731164|ref|YP_001776597.1| prepilin peptidase [Xylella fastidiosa M12] gi|182682541|ref|YP_001830701.1| peptidase A24A domain-containing protein [Xylella fastidiosa M23] gi|28057910|gb|AAO29752.1| pre-pilin leader peptidase [Xylella fastidiosa Temecula1] gi|71163982|gb|EAO13697.1| Prepilin peptidase [Xylella fastidiosa Dixon] gi|71730401|gb|EAO32482.1| Prepilin peptidase [Xylella fastidiosa Ann-1] gi|71731993|gb|EAO34050.1| Prepilin peptidase [Xylella fastidiosa Ann-1] gi|167965957|gb|ACA12967.1| Prepilin peptidase [Xylella fastidiosa M12] gi|182632651|gb|ACB93427.1| peptidase A24A domain protein [Xylella fastidiosa M23] gi|307578819|gb|ADN62788.1| peptidase A24A domain-containing protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 287 Score = 43.0 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 21/154 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFII 71 ++ LV A DL + ++P++++++++ + +A L M + L VG + I Sbjct: 133 IVFSCFLVALAGIDLRTRLLPDQLTLMLMWLGLIGSADNLFMAAKPALLGAAVGYLSLWI 192 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 F MG GD K+L + W G L + ++ G +L L VR Sbjct: 193 VAALFKLIFNKEGMGHGDFKMLGALGAWCGL-KGILPIILISSLAGVVLGSVWLVVRGHN 251 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 IP+G +++GG I + Sbjct: 252 RTTM---------------IPFGPYLAVGGWIVF 270 >gi|126733581|ref|ZP_01749328.1| hypothetical protein RCCS2_05479 [Roseobacter sp. CCS2] gi|126716447|gb|EBA13311.1| hypothetical protein RCCS2_05479 [Roseobacter sp. CCS2] Length = 163 Score = 43.0 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 1/129 (0%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79 +F + +D+ I N+ IV++ + + + + L I ++C +A Sbjct: 20 LFISWNDMRDMKITNKSVIVVMVVYGVLGPFA-FGWGMYFWQWLHFPIALVVCMALWALR 78 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139 MGGGD KL+ + A +F F A L L V L Sbjct: 79 FMGGGDAKLIAAMAPFFVMADIEFILRIFAASLIAALIVHTLFRLTPLKRPVSEWKSWNA 138 Query: 140 SFLMKNKIP 148 + P Sbjct: 139 GWYFPKGFP 147 >gi|308094550|ref|ZP_05889873.2| peptidase, A24 family [Vibrio parahaemolyticus AN-5034] gi|308095453|ref|ZP_05906037.2| peptidase, A24 (type IV prepilin peptidase) family [Vibrio parahaemolyticus Peru-466] gi|308125908|ref|ZP_05777990.2| peptidase, A24 family [Vibrio parahaemolyticus K5030] gi|308126437|ref|ZP_05910138.2| peptidase, A24 family [Vibrio parahaemolyticus AQ4037] gi|308087111|gb|EFO36806.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio parahaemolyticus Peru-466] gi|308090937|gb|EFO40632.1| peptidase, A24 family [Vibrio parahaemolyticus AN-5034] gi|308108959|gb|EFO46499.1| peptidase, A24 family [Vibrio parahaemolyticus AQ4037] gi|308114377|gb|EFO51917.1| peptidase, A24 family [Vibrio parahaemolyticus K5030] Length = 119 Score = 43.0 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 12/121 (9%) Query: 41 LGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTP 100 L +T+ L L V VFI F + NI+GGGDVKL+ + Sbjct: 6 LLIIFITSLLSLFFTPEPLTQLAVSTSVFICFFILWLINIVGGGDVKLIGVLFLGVN-DE 64 Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 L+ + + +LGGI + + + + P +N IPY I I + GL Sbjct: 65 YMLAAIVAIGLLGGIQILVMWLMSVYRKKTPF-----------ENGIPYTIPIGISGLFF 113 Query: 161 Y 161 + Sbjct: 114 F 114 >gi|89074158|ref|ZP_01160657.1| putative leader peptidase PilD [Photobacterium sp. SKA34] gi|89050094|gb|EAR55620.1| putative leader peptidase PilD [Photobacterium sp. SKA34] Length = 289 Score = 43.0 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 56/131 (42%), Gaps = 9/131 (6%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 + + F L+ D+ ++P+++++ ++ + +L + + L + Sbjct: 130 AIAVIFFTFALIALTFIDIDKMLLPDQITLPLMWAGILLSIMGISPVSLTDSVIGAIAGY 189 Query: 69 FIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSF-LFFVAILGGILSVFIL 121 + F+AF + MG GD KLL + W GW L F + +++G + + +L Sbjct: 190 LSLWSVFWAFKLLTKKDGMGYGDFKLLAALGAWLGW--QLLPFVVLLSSLVGALCGIVLL 247 Query: 122 TVRMITNHIPI 132 ++ N P Sbjct: 248 KMQDTDNQTPF 258 >gi|238897550|ref|YP_002923229.1| type IV prepilin peptidase family protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465307|gb|ACQ67081.1| type IV prepilin peptidase family protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 68 Score = 43.0 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 15/80 (18%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140 MGGGD+KL+T+ + L+F+F+ +I + + GM + S Sbjct: 1 MGGGDIKLITALILGLNHL-QILNFIFYTSIC--------------GLLVLLLGMLISFS 45 Query: 141 FLMKNKIPYGIAISMGGLIS 160 + K IPYG+AI++G L+S Sbjct: 46 DIKKRGIPYGVAIALGFLLS 65 >gi|157693208|ref|YP_001487670.1| A24 unassigned peptidase family protein [Bacillus pumilus SAFR-032] gi|157681966|gb|ABV63110.1| possible A24 family unassigned peptidase [Bacillus pumilus SAFR-032] Length = 239 Score = 43.0 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 1/111 (0%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +I V A +SDL +PN + + F + L + L+ Sbjct: 95 FEGLFLMILCSLFVIAVVSDLLYMRVPNELFLFFFPLFAIYRTLEPLLIWWEGTASLIFC 154 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117 I+ +F N MGG D+K+ + A FG+ P L LF I G + + Sbjct: 155 ILLFSSLDYFKPNSMGGADMKMFSVLAFCFGFKPFLL-MLFLSCITGMVYA 204 >gi|73542326|ref|YP_296846.1| peptidase A24A, prepilin type IV [Ralstonia eutropha JMP134] gi|72119739|gb|AAZ62002.1| Peptidase A24A, prepilin type IV [Ralstonia eutropha JMP134] Length = 190 Score = 43.0 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 55/159 (34%), Gaps = 15/159 (9%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 + AA DL IPN +++ + L + L + II F+ Sbjct: 29 AIVSTAAAIDLDRRRIPNWLTLGSWIAALPMQVAIHGIAAGSLAWLYGWIAGLIIFLPFY 88 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 M GDVKL+ + W G + S ++GG ++ +L V T Sbjct: 89 LLRGMAAGDVKLMAAVGAWLGAS-MVPSIAVATWLIGGAWALAMLLVTGQTGATLSRVGN 147 Query: 137 VPKSFLMKNK--------------IPYGIAISMGGLISY 161 + S + IPYG+AI+ G L Sbjct: 148 MLLSAAIHRGHGLAKSGSKSSAGSIPYGVAIAGGTLAML 186 >gi|121729938|ref|ZP_01682360.1| leader peptidase PilD [Vibrio cholerae V52] gi|121628326|gb|EAX60833.1| leader peptidase PilD [Vibrio cholerae V52] Length = 291 Score = 43.0 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 7/121 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64 VF L + L+ A D + ++P+++++ +L + A L + + + Sbjct: 128 VFGVALLFFSYVLIAATFIDFDTMLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + + +++G I + Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246 Query: 121 L 121 L Sbjct: 247 L 247 >gi|217978826|ref|YP_002362973.1| peptidase A24A prepilin type IV [Methylocella silvestris BL2] gi|217504202|gb|ACK51611.1| peptidase A24A prepilin type IV [Methylocella silvestris BL2] Length = 179 Score = 43.0 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 LV +A+ D+ +IPN +V+ + L + LLV + Sbjct: 16 IVLVASAIRDVKDRIIPNEYVVVIAVIGVAQCVALRPGLA--WVSLLVAAGTLLGLGVLA 73 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 +N++GGGDVKL+++ + + + L +A+ GG+LS L Sbjct: 74 HWNLIGGGDVKLISAVTLLVPPNQAPV-LLIGIALAGGVLSCIYLAAH 120 >gi|313901014|ref|ZP_07834502.1| bacterial peptidase A24, N-terminal domain protein [Clostridium sp. HGF2] gi|312953972|gb|EFR35652.1| bacterial peptidase A24, N-terminal domain protein [Clostridium sp. HGF2] Length = 255 Score = 43.0 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 12/123 (9%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 +VF+ ++ ++ D + IPN + I ++ + + E + +G Sbjct: 105 LVFAVFMILFTITMI-----DFDTMTIPNGLIISLI---VPVGIFTVLHPETALMTRAIG 156 Query: 66 LIVFIICFCFFAF---NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + + + GGGD+KL+ GW + L+F V ++GG +V++L Sbjct: 157 FFIVSLPMYLLTLLIPDCFGGGDIKLIAVAGFLLGWKLTLLAFFISV-LIGGSYAVYLLL 215 Query: 123 VRM 125 R Sbjct: 216 SRK 218 >gi|169831129|ref|YP_001717111.1| peptidase A24A domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169637973|gb|ACA59479.1| peptidase A24A domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 254 Score = 43.0 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 1/117 (0%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+ A L DL +IP+RV + L L L L +G +F++ Sbjct: 111 AVLLIATLIDLRHGIIPDRVVLAGLVLGLPLVALQSWAALLWGAAAFLGAGLFMLAIAVI 170 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 + MGGGD+KL ++ G LF + GG ++V +L P+ Sbjct: 171 SRGGMGGGDIKLAALMGLYLGPA-GVALALFLAFLAGGTVAVLLLATGRKGRKDPVP 226 >gi|152974831|ref|YP_001374348.1| peptidase A24A domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023583|gb|ABS21353.1| peptidase A24A domain protein [Bacillus cytotoxicus NVH 391-98] Length = 240 Score = 43.0 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 4/123 (3%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 LV L+DLF MIPN V + FL+ + + +L G I+F + + Sbjct: 107 LLVMITLTDLFYMMIPNAVLLSFSCIFLIEYMIS--PFIFWLDSVLGGGIIFCVLYILRM 164 Query: 78 F--NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 N +GGGDVKLL+ G ++ L + L RM FG Sbjct: 165 IYPNGLGGGDVKLLSLLGFVLGIKGILITLCIASCSSLCFLGICFLFKRMNIRDPLPFGP 224 Query: 136 FVP 138 F+ Sbjct: 225 FIA 227 >gi|160893703|ref|ZP_02074487.1| hypothetical protein CLOL250_01257 [Clostridium sp. L2-50] gi|156864688|gb|EDO58119.1| hypothetical protein CLOL250_01257 [Clostridium sp. L2-50] Length = 144 Score = 42.6 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%) Query: 22 AALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80 AAL D+ + IPN + ++ + +T + G+ I + L I I + F Sbjct: 8 AALYDIRTWKIPNWLILLGLETGIFITVWQNGVRIGSIRV-LAGIWIPIGILYVMFLAGW 66 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 +G GD+KL ++ + G+ L + I GGILS+F + Sbjct: 67 LGAGDIKLFSAVGAFCGF--MIWKILLYAFIAGGILSLFYVI 106 >gi|118579418|ref|YP_900668.1| prepilin peptidase [Pelobacter propionicus DSM 2379] gi|118502128|gb|ABK98610.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Pelobacter propionicus DSM 2379] Length = 261 Score = 42.6 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 21/160 (13%) Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLL 63 + AV + LV DL +IP+ +S+ ++ F+ + FL G + L +L Sbjct: 98 PTLAFAVLFLFCSALVVITFIDLEHQIIPDEISLPGIVLGFIFSFFLRGHGWLNSLLGIL 157 Query: 64 VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 +G ++ + MGGGD+KLL + GW S +F ++ G ++ V Sbjct: 158 LGGGSLLLVAYGYQLVTGKEGMGGGDIKLLAMMGAFLGW-KSIPFIIFVSSLAGSVIGVS 216 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 ++ ++ + + IP+G +++G L+ Sbjct: 217 LMLIQKKDSKLA---------------IPFGPYLALGALL 241 >gi|254466366|ref|ZP_05079777.1| peptidase A24A, prepilin type IV [Rhodobacterales bacterium Y4I] gi|206687274|gb|EDZ47756.1| peptidase A24A, prepilin type IV [Rhodobacterales bacterium Y4I] Length = 165 Score = 42.6 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 1/104 (0%) Query: 8 FSAVFLIPPFCLVF-AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + FL L + AL+DL IPN V+ ++ + + HLL Sbjct: 7 AALWFLPFVLPLCYTVALTDLRGMRIPNWAVDVLAVIYVAVGAIAMPSWADYGWHLLHLP 66 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110 + F F++ +G GD K + A +F L + F A Sbjct: 67 AGIGLGFLFYSAGAVGAGDAKFAGAAAPFFALGDLRLLMIIFAA 110 >gi|330811040|ref|YP_004355502.1| membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379148|gb|AEA70498.1| Hypothetical protein; putative membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 176 Score = 42.6 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 11/143 (7%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 SDL IPN + ++ L L + + LL LI F + +A M G Sbjct: 22 SDLLRHRIPNTLVLLGLALGLASQIYTD-GIGGLGDSLLGMLICFALFLPMYAVGGMAAG 80 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFL-- 142 DVKL+T + + + + LF + I GG+ I+ R ++ Sbjct: 81 DVKLMTMVGSFLPFHYALWAALFSL-IAGGVCGFLIVLARGQLLQTLQRYWLSVRAQAYL 139 Query: 143 -------MKNKIPYGIAISMGGL 158 PY IAI +G L Sbjct: 140 APGSDEVAGKPFPYSIAILIGTL 162 >gi|90580240|ref|ZP_01236047.1| putative leader peptidase PilD [Vibrio angustum S14] gi|90438542|gb|EAS63726.1| putative leader peptidase PilD [Vibrio angustum S14] Length = 289 Score = 42.6 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 9/131 (6%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGL 66 + + F L+ D+ ++P+++++ ++ +L + + + + + G Sbjct: 130 AIAVIFFTFALIALTFIDIDKMLLPDQITLPLMWVGILLSVMGISPVSLTDSVIGTMAGY 189 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSF-LFFVAILGGILSVFIL 121 + F F + MG GD KLL + W GW L F + +++G + + +L Sbjct: 190 LSLWSVFWIFKLLTKKDGMGYGDFKLLAALGAWLGW--QLLPFVVLLSSLVGAVCGIVLL 247 Query: 122 TVRMITNHIPI 132 ++ N P Sbjct: 248 KMQDADNQTPF 258 >gi|157961831|ref|YP_001501865.1| peptidase A24A prepilin type IV [Shewanella pealeana ATCC 700345] gi|157846831|gb|ABV87330.1| peptidase A24A prepilin type IV [Shewanella pealeana ATCC 700345] Length = 188 Score = 42.6 bits (99), Expect = 0.025, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 14/158 (8%) Query: 20 VFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 V A DL IPN + + + FL+ ++ + + L + + FII F F F Sbjct: 18 VLAITFDLVREKIPNWLCLIAIFCGFLINSYFAQL--NGLMLSFIGFSLAFIILFPTFMF 75 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSF-----------LFFVAILGGILSVFILTVRMIT 127 I+G GD+KL+ G S L V G+ F R Sbjct: 76 KILGAGDIKLMMGIGALIGPQLLVWSIAYAIIAGAITSLLLVIWKSGLSGCFKTVRRYWD 135 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSY 165 + ++PY A+++G L + + Sbjct: 136 CFYLRTYFKPEEGEAAGQRVPYAPALAIGWLWACSLNP 173 >gi|326318391|ref|YP_004236063.1| prepilin peptidase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375227|gb|ADX47496.1| Prepilin peptidase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 295 Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 22/148 (14%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 LV A D + ++P+ +++ +L LL + L A + ++AF Sbjct: 146 LVALACIDWDTTLLPDDITLPLLWGGLLASAFQWTSVPLFASVAGAAAGYLSLWAVYWAF 205 Query: 79 NI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 + MG GD KL + WFGW + + + +++G ++ + Sbjct: 206 KLATGKEGMGHGDFKLFAALGAWFGW-QALVPIILMSSVIGALIGI-------------- 250 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 GM + IP+G ++ GL + Sbjct: 251 -GMKFTRGLREGGYIPFGPFLAGAGLAA 277 >gi|323486359|ref|ZP_08091684.1| prepilin peptidase [Clostridium symbiosum WAL-14163] gi|323400341|gb|EGA92714.1| prepilin peptidase [Clostridium symbiosum WAL-14163] Length = 252 Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 + I L+ ++ D + IP +IV+ + L+ + D+ + L+ + ++ Sbjct: 107 YAIAASSLLVLSVIDWRTFEIPVGCNIVIGTAGLVNLWFNRQDWLTYMIGLICVSGLLLL 166 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 MGGGDVKL+ + + GW L+F ILG ++ + ++ ++ + Sbjct: 167 ILLLSKGRAMGGGDVKLMAAAGLLLGWQNVILAFACGC-ILGSVIHLVLMKIQGKERMLA 225 Query: 132 IFGMFVPKSF 141 + Sbjct: 226 FGPYLSAGIW 235 >gi|254245569|ref|ZP_04938890.1| Peptidase A24A [Burkholderia cenocepacia PC184] gi|124870345|gb|EAY62061.1| Peptidase A24A [Burkholderia cenocepacia PC184] Length = 167 Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 2/137 (1%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + +SD+ I N + + L L A + + + +VG++V +I Sbjct: 10 VFLTWAALVVVSDIRFRRISNVLVVAGLIGGLGAACVAASPFGISVHQAVVGMLVGLIGL 69 Query: 74 C-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 FF +MG DVK+ +W G + L ++ G+ ++ ++ + + Sbjct: 70 IPFFLLRVMGAADVKIFAVLGIWCG-AHALLWLWVAASLAAGLHALAVMLLSRTSLGGLW 128 Query: 133 FGMFVPKSFLMKNKIPY 149 PY Sbjct: 129 RRREPALILGRYRATPY 145 >gi|91788408|ref|YP_549360.1| peptidase A24A, prepilin type IV [Polaromonas sp. JS666] gi|91697633|gb|ABE44462.1| peptidase A24A, prepilin type IV [Polaromonas sp. JS666] Length = 192 Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 22/151 (14%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGM--DYELIALHLLVGLIVFIICFCFFAFNIMGG 83 DL S IPN + ++ L + L + ++ L LLVG VF+ + MG Sbjct: 32 DLKSRRIPNWLVLMGLITSLALQIIFSGIGGFKAWGLGLLVGFGVFLP---LYLLRAMGA 88 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI----------------LTVRMIT 127 GDVKL+ + G S L + ++GG L++ + + Sbjct: 89 GDVKLMAMVGAFLGPV-SALGAVLTTLVVGGALAIAVALRCGILKNTLKNIRFALTLALY 147 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + GM + + +PY +AI++G L Sbjct: 148 KGLSGGGMQLEQPSTSAGNLPYAVAIAVGTL 178 >gi|84687269|ref|ZP_01015149.1| hypothetical protein 1099457000225_RB2654_21338 [Maritimibacter alkaliphilus HTCC2654] gi|84664702|gb|EAQ11186.1| hypothetical protein RB2654_21338 [Rhodobacterales bacterium HTCC2654] Length = 171 Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 52/157 (33%), Gaps = 4/157 (2%) Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG----MDYELI 58 + ++ V+ A+SD+ IPN+ + + G + + + Sbjct: 5 QPALLGLMFLPFAAVISVWVAISDMSRMKIPNKAVMALFGVYAVVGLAAVAMSVITLPDY 64 Query: 59 ALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 + ++ ++ F A ++G GD K + A + + F A + G + Sbjct: 65 LWRYVHLAVILLVGFVMNAAGLLGAGDAKFAAAMAPFVALGDLSVFAFIFAAAILGGFVL 124 Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155 + R+ + G + + GI + Sbjct: 125 HRIAKRVSFVRAAVPGWESWERDDFPMGLCLGIGLVA 161 >gi|308068039|ref|YP_003869644.1| type II secretory pathway, prepilin signal peptidase PulO [Paenibacillus polymyxa E681] gi|305857318|gb|ADM69106.1| Type II secretory pathway, prepilin signal peptidase PulO [Paenibacillus polymyxa E681] Length = 170 Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 1/135 (0%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 +++ L A ++DL S IPN++++ + L+ L G ++ + F Sbjct: 5 YIVCGVLLAIALVTDLRSMKIPNKLTLPGIVVGLVFNTLFG-GWDGFLFAVAGLGTGFGF 63 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 + +G GDVKL W G ++ S L+ + G I +L R + Sbjct: 64 MLILYWMGAVGAGDVKLFGLIGAWTGAAFAWQSALYSIFFAGIIGIGILLWKRETIMRLR 123 Query: 132 IFGMFVPKSFLMKNK 146 + FL ++ Sbjct: 124 RVAFNLGGFFLFRSG 138 >gi|78066128|ref|YP_368897.1| peptidase A24A, prepilin type IV [Burkholderia sp. 383] gi|77966873|gb|ABB08253.1| Peptidase A24A, prepilin type IV [Burkholderia sp. 383] Length = 164 Score = 42.2 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 10/141 (7%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--LL 63 M+ + V AL D+ IPN + I G F+ + G + I+++ L+ Sbjct: 1 MILLTGVGVFLAWAVLVALEDIRHRRIPNSLVI---GGFVSAFLVSGHNPFGISVNQALI 57 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 LI F FF +MG DVK+ W G ++ +L++ + Sbjct: 58 GALIGLASLFPFFVLRVMGAADVKVFAVLGAWCGPQALLWLWIMAS-----LLALAHVGT 112 Query: 124 RMITNHIPIFGMFVPKSFLMK 144 + P+ ++ +S M+ Sbjct: 113 LVFATRTPVLALWQRRSPTME 133 >gi|229521255|ref|ZP_04410675.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae TM 11079-80] gi|229341787|gb|EEO06789.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae TM 11079-80] Length = 291 Score = 42.2 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 7/121 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64 VF+ L + L+ A D + ++P+++++ +L + A L + + +V Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMV 187 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + + +++G I + Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246 Query: 121 L 121 L Sbjct: 247 L 247 >gi|116748928|ref|YP_845615.1| peptidase A24A, prepilin type IV [Syntrophobacter fumaroxidans MPOB] gi|116697992|gb|ABK17180.1| peptidase A24A, prepilin type IV [Syntrophobacter fumaroxidans MPOB] Length = 187 Score = 42.2 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 19/162 (11%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 + L+ A+ D+ I N + ++ A G++ + +L L IVF+I Sbjct: 12 LLCVVLIVVAVEDMRKHRIRNVYTFPMVAVGLSFHALSGGLEGLVFSLKGLGLGIVFLIF 71 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 + IMG GDVKL+ + G F +FL + GG+L+V ++ + + Sbjct: 72 --PYLLGIMGAGDVKLMGAVGSILGSRGVFAAFLL-TCVAGGVLAVILMVLNSKHTMKRL 128 Query: 133 FGMFV---------------PKSFLMKNKIPYGIAISMGGLI 159 + P L + + YG AI+ G + Sbjct: 129 SAAWAAARRLPAEGRASGVPPGGDLKRPGLAYGAAIATGTIA 170 >gi|311031471|ref|ZP_07709561.1| peptidase A24A domain protein [Bacillus sp. m3-13] Length = 180 Score = 42.2 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 20/149 (13%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF- 73 L+ +SDL +IPN++ + LG F++ F + ++ I HL+ + F+I Sbjct: 35 FISMLIIIVISDLHYMIIPNKILLFFLGLFIIERFF--IPFQTIPDHLIGMAVGFLIPLL 92 Query: 74 -CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 + MGGGDVKL GW L+F +++G I ++ + + + +P Sbjct: 93 VAVISKGGMGGGDVKLFAVLGFVLGWELVILTFFL-SSLIGMIAALIGMLLGKVKRGVPF 151 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161 P+G +I++ LI+Y Sbjct: 152 ---------------PFGPSIALAALITY 165 >gi|229527032|ref|ZP_04416427.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae 12129(1)] gi|229335429|gb|EEO00911.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae 12129(1)] Length = 291 Score = 42.2 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 7/121 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64 VF+ L + L+ A D + ++P+++++ +L + A L + + + Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + + +++G I + Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246 Query: 121 L 121 L Sbjct: 247 L 247 >gi|192361521|ref|YP_001983191.1| type IV pilus prepilin peptidase PilD [Cellvibrio japonicus Ueda107] gi|190687686|gb|ACE85364.1| type IV pilus prepilin peptidase PilD [Cellvibrio japonicus Ueda107] Length = 308 Score = 42.2 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 66/154 (42%), Gaps = 21/154 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ + DL + ++P+ +++ +L ++ +F L D + G + Sbjct: 154 LVLTWALIALTMIDLDTYLLPDDITLPLLWLGLIVNSFGLFTDLASAFWGAVAGYLTLWS 213 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W GW + +++G ++ + ++ VR Sbjct: 214 VYQLFKLLTGKEGMGYGDFKLLAALGAWMGW-QMLPQIILLSSLVGAVIGITLIIVRGRD 272 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 +IP IP+G +++ G I++ Sbjct: 273 RNIP---------------IPFGPYLAIAGWIAF 291 >gi|11498541|ref|NP_069769.1| hypothetical protein AF0936 [Archaeoglobus fulgidus DSM 4304] gi|2649660|gb|AAB90302.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 240 Score = 42.2 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 4/104 (3%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHLLV 64 M+ A FL+ L++A DL S ++PNRV ++L S +T + L + LI +++ Sbjct: 1 MLDLAKFLVVLGFLLYACKLDLESRIVPNRVWKRMLLVSLPITVYQLFLGKHLIFEYMIA 60 Query: 65 G---LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105 G ++V + + + GG D K + + AV F + P+F F Sbjct: 61 GIFVVMVIALSYALYLIGAYGGADAKAIMALAVIFPFYPTFNGF 104 >gi|281417259|ref|ZP_06248279.1| peptidase A24A prepilin type IV [Clostridium thermocellum JW20] gi|281408661|gb|EFB38919.1| peptidase A24A prepilin type IV [Clostridium thermocellum JW20] Length = 175 Score = 42.2 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 52/109 (47%), Gaps = 2/109 (1%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 ++ A +SD+ I N+++ + ++T +L + LL ++ F++ + Sbjct: 10 VLVLIALVSDIRHYKIRNKLTFSFMFIGIVTNLVLD-GVRGLLDSLLGIIVPFLLLIVLY 68 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 A ++G GDVKL ++ G + + + + GG++++ IL + Sbjct: 69 ALRMLGAGDVKLFSAIGAVLGVRAALW-IMAYSFLAGGVIALIILIINR 116 >gi|297581050|ref|ZP_06942975.1| type IV-A prepilin peptidase PilD [Vibrio cholerae RC385] gi|297534876|gb|EFH73712.1| type IV-A prepilin peptidase PilD [Vibrio cholerae RC385] Length = 291 Score = 42.2 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 7/121 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64 VF+ L + L+ A D + ++P+++++ +L + A L + + + Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + + +++G I + Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246 Query: 121 L 121 L Sbjct: 247 L 247 >gi|126640409|ref|YP_001083393.1| type 4 prepilin-like proteins leader peptide processing enzyme [Acinetobacter baumannii ATCC 17978] Length = 247 Score = 42.2 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+R ++ + + F + L+G + I Sbjct: 99 LVLTWVLIALTFIDFDTQLLPDRFTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 158 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + ++LG I+ + +L +R Sbjct: 159 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 217 Query: 128 NHIPIFGMFVPKSF 141 + Sbjct: 218 QPFAFGPYIAIAGW 231 >gi|119899525|ref|YP_934738.1| prepilin peptidase [Azoarcus sp. BH72] gi|119671938|emb|CAL95852.1| prepilin peptidase [Azoarcus sp. BH72] Length = 283 Score = 42.2 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 55/132 (41%), Gaps = 6/132 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVG 65 + + LI + ++ A DL + ++P+++++ +L + + ++G Sbjct: 126 LAAVGGLIFLWSMIALAFIDLDTQLLPDQITLPLLWLGLAFNLASTYVPLSAAVVGAMLG 185 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW L+ + +++G + + ++ Sbjct: 186 YLSLWSVYWLFKLVTGKEGMGYGDFKLLAAIGAWLGWQVLPLT-ILLSSLVGAAVGISLI 244 Query: 122 TVRMITNHIPIF 133 ++PI Sbjct: 245 LFARHGRNVPIP 256 >gi|15642423|ref|NP_232056.1| leader peptidase PilD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587616|ref|ZP_01677380.1| leader peptidase PilD [Vibrio cholerae 2740-80] gi|147675471|ref|YP_001217926.1| leader peptidase PilD [Vibrio cholerae O395] gi|153802797|ref|ZP_01957383.1| leader peptidase PilD [Vibrio cholerae MZO-3] gi|153818415|ref|ZP_01971082.1| leader peptidase PilD [Vibrio cholerae NCTC 8457] gi|153824114|ref|ZP_01976781.1| leader peptidase PilD [Vibrio cholerae B33] gi|227082547|ref|YP_002811098.1| leader peptidase PilD [Vibrio cholerae M66-2] gi|229507514|ref|ZP_04397019.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae BX 330286] gi|229512290|ref|ZP_04401769.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae B33] gi|229519426|ref|ZP_04408869.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae RC9] gi|229524411|ref|ZP_04413816.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229607020|ref|YP_002877668.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae MJ-1236] gi|254849549|ref|ZP_05238899.1| leader peptidase PilD [Vibrio cholerae MO10] gi|255746903|ref|ZP_05420848.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholera CIRS 101] gi|262161554|ref|ZP_06030664.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae INDRE 91/1] gi|262168405|ref|ZP_06036102.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae RC27] gi|298500216|ref|ZP_07010021.1| type IV-A prepilin peptidase PilD [Vibrio cholerae MAK 757] gi|3025799|gb|AAC63504.1| type 4 prepilin peptidase VcpD [Vibrio cholerae] gi|4455004|gb|AAD21032.1| type IV-A prepilin peptidase PilD [Vibrio cholerae] gi|9657001|gb|AAF95569.1| leader peptidase PilD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548126|gb|EAX58199.1| leader peptidase PilD [Vibrio cholerae 2740-80] gi|124121662|gb|EAY40405.1| leader peptidase PilD [Vibrio cholerae MZO-3] gi|126511048|gb|EAZ73642.1| leader peptidase PilD [Vibrio cholerae NCTC 8457] gi|126518363|gb|EAZ75586.1| leader peptidase PilD [Vibrio cholerae B33] gi|146317354|gb|ABQ21893.1| leader peptidase PilD [Vibrio cholerae O395] gi|227010435|gb|ACP06647.1| leader peptidase PilD [Vibrio cholerae M66-2] gi|227014318|gb|ACP10528.1| leader peptidase PilD [Vibrio cholerae O395] gi|229337992|gb|EEO03009.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229344115|gb|EEO09090.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae RC9] gi|229352255|gb|EEO17196.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae B33] gi|229355019|gb|EEO19940.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae BX 330286] gi|229369675|gb|ACQ60098.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae MJ-1236] gi|254845254|gb|EET23668.1| leader peptidase PilD [Vibrio cholerae MO10] gi|255735305|gb|EET90705.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholera CIRS 101] gi|262023297|gb|EEY42001.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae RC27] gi|262028865|gb|EEY47519.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae INDRE 91/1] gi|297540909|gb|EFH76963.1| type IV-A prepilin peptidase PilD [Vibrio cholerae MAK 757] Length = 291 Score = 42.2 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 7/121 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64 VF+ L + L+ A D + ++P+++++ +L + A L + + + Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + + +++G I + Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246 Query: 121 L 121 L Sbjct: 247 L 247 >gi|120555594|ref|YP_959945.1| prepilin peptidase [Marinobacter aquaeolei VT8] gi|120325443|gb|ABM19758.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Marinobacter aquaeolei VT8] Length = 291 Score = 42.2 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 21/154 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + LV + D + ++P+ +++ ++ +L F + D+ + G + Sbjct: 138 LLMVWALVALTVIDFDTQLLPDGITLPLMWLGLVLNYFGVLTDFSSAFWGAVAGYLSLWS 197 Query: 72 CFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W GW + + +++G I+ + ++ R Sbjct: 198 VYWLFKLATGKEGMGHGDFKLLAALGAWLGW-QLLPAVILLSSLVGAIVGISLMAFRKHG 256 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 +P IP+G ++ GL+S Sbjct: 257 REVP---------------IPFGPYLAAAGLLSL 275 >gi|207724792|ref|YP_002255189.1| prepilin peptidase protein [Ralstonia solanacearum MolK2] gi|206590017|emb|CAQ36978.1| prepilin peptidase protein [Ralstonia solanacearum MolK2] Length = 154 Score = 42.2 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 13/132 (9%) Query: 36 VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVW 95 + + ++ T L D+ + L G I +A MG GDVK T + Sbjct: 10 LVLSIVLVKFGTVMALAYDWRDVWL---GGAIALAGFLPLYALGWMGAGDVKFFTVAGLL 66 Query: 96 FGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP---------KSFLMKNK 146 GW ++ ++L G+ ++ IL +R + P M + + Sbjct: 67 AGW-HGLVAIWLVSSVLAGVHALAILLLRRVDASAPSAWMLMRVCPALARWDPGHAGRRG 125 Query: 147 IPYGIAISMGGL 158 IPY +++G L Sbjct: 126 IPYAAYMAIGLL 137 >gi|218441560|ref|YP_002379889.1| peptidase A24A domain protein [Cyanothece sp. PCC 7424] gi|218174288|gb|ACK73021.1| peptidase A24A domain protein [Cyanothece sp. PCC 7424] Length = 270 Score = 42.2 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 12/131 (9%) Query: 19 LVFAALSDLFSAMIPNRVS-IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI------- 70 L+ +L DL + +PN ++ ++ + A G D +A++L++G+I + Sbjct: 114 LLALSLIDLDTMTLPNSLTESGLVLGLIFQATRSGFDGSEMAINLILGIIGAVLGLWLFD 173 Query: 71 ----ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 + F MGGGD KL W GW L+ A+ V IL+ +M Sbjct: 174 IIRWVGTIIFQQEAMGGGDPKLAAMIGAWLGWKYLLLTGFLACALGAFFGIVAILSTQMG 233 Query: 127 TNHIPIFGMFV 137 H FG F+ Sbjct: 234 RRHPIRFGPFL 244 >gi|157375511|ref|YP_001474111.1| hypothetical protein Ssed_2374 [Shewanella sediminis HAW-EB3] gi|157317885|gb|ABV36983.1| hypothetical protein Ssed_2374 [Shewanella sediminis HAW-EB3] Length = 191 Score = 42.2 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 16/162 (9%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 + + A DL+ IPN++S++ + F + A+ + + + + FI Sbjct: 10 LTLAGVFFITAISVDLYKEKIPNKLSLLAIFCGFAINAYYAQL--AGVLMACFGFGLAFI 67 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + F F F I+G GD+KL+ G S L + + G S+ ++T + + Sbjct: 68 LLFPTFIFRILGAGDIKLMMGIGALMGPD-LLFSSLVYGIVAGAGTSLILITWKAGFRGL 126 Query: 131 PIFGMFVPKSFLMKN------------KIPYGIAISMGGLIS 160 F ++ ++PY A+++G L + Sbjct: 127 FKTVKRYWDCFYLRTYFKPESDEAAGQRVPYAPALAIGWLWA 168 >gi|194288839|ref|YP_002004746.1| prepilin peptidase transmembrane protein [Cupriavidus taiwanensis LMG 19424] gi|193222674|emb|CAQ68677.1| PREPILIN PEPTIDASE TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 177 Score = 42.2 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 49/158 (31%), Gaps = 15/158 (9%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 + AA DL IPN ++ + L + L L I F+ Sbjct: 17 IVTIAAAIDLDRRRIPNWLTFGAWLAALPMQAAIHGMTTGSLAWLYGWLAGLAILLPFYL 76 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP------ 131 M GDVKL+ + W G ++GG+ ++ ++ Sbjct: 77 LRGMAAGDVKLMAAVGAWLG-AGMVPKIALATWLIGGVWALALILFTGQARATLSRVGHM 135 Query: 132 --------IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 ++ +PYG+AI+ G L Sbjct: 136 LLSMAVQHRAAPTQREARTSAGSLPYGVAIAAGTLAML 173 >gi|217969594|ref|YP_002354828.1| prepilin peptidase [Thauera sp. MZ1T] gi|217506921|gb|ACK53932.1| Prepilin peptidase [Thauera sp. MZ1T] Length = 283 Score = 42.2 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 25/156 (16%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ + +V DL + ++P+ +++ +L +L AF LG + + ++ + ++ Sbjct: 132 LLFVWAMVALTFIDLDTQLLPDDITLPLL--WLGLAFNLGTTFAELPDAVIGAMAGYLAL 189 Query: 73 FCFFAF-------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + F MG GD KLL + W GW L+ + +++G ++ + ++ V Sbjct: 190 WAVFWLFKLATGKEGMGYGDFKLLAAIGAWLGWQMLPLT-ILLSSLVGAVVGILLIVVAR 248 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 ++P IP+G ++ GLI+ Sbjct: 249 HGRNVP---------------IPFGPYLAAAGLIAL 269 >gi|169634559|ref|YP_001708295.1| type 4 prepilin-like proteins leader peptide processing enzyme [Acinetobacter baumannii SDF] gi|169153351|emb|CAP02468.1| type 4 prepilin-like proteins leader peptide processing enzyme (Protein secretion protein XCPA)[Includes: Leader peptidase (Prepilin peptidase); N-methyltransferase ] [Acinetobacter baumannii] Length = 286 Score = 42.2 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+R ++ + + F + L+G + I Sbjct: 138 LVLTWVLIALTFIDFDTQLLPDRFTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + ++LG I+ + +L +R Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256 Query: 128 NHIPIFGMFVPKSF 141 + Sbjct: 257 QPFAFGPYIAIAGW 270 >gi|254291778|ref|ZP_04962563.1| leader peptidase PilD [Vibrio cholerae AM-19226] gi|150422290|gb|EDN14252.1| leader peptidase PilD [Vibrio cholerae AM-19226] Length = 291 Score = 42.2 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 7/121 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64 VF+ L + L+ A D + ++P+++++ +L + A L + + + Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + + +++G I + Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246 Query: 121 L 121 L Sbjct: 247 L 247 >gi|15839126|ref|NP_299814.1| pre-pilin leader peptidase [Xylella fastidiosa 9a5c] gi|9107744|gb|AAF85334.1|AE004060_9 pre-pilin leader peptidase [Xylella fastidiosa 9a5c] Length = 287 Score = 42.2 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 21/154 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFII 71 ++ LV A DL + ++P++++++++ + + L M + L +VG + I Sbjct: 133 IVFSCFLVALAGIDLRTRLLPDQLTLMLMWLGLIGSTDNLFMAAKPALLGAVVGYLSLWI 192 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 F MG GD K+L + W G L + ++ G +L L VR Sbjct: 193 VAALFKLIFNKEGMGHGDFKMLAALGAWCGL-KGILPIILISSLAGVVLGSVWLVVRGHN 251 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 IP+G +++GG I + Sbjct: 252 RTTM---------------IPFGPYLAVGGWIVF 270 >gi|294649075|ref|ZP_06726519.1| Type 4 prepilin peptidase [Acinetobacter haemolyticus ATCC 19194] gi|292825036|gb|EFF83795.1| Type 4 prepilin peptidase [Acinetobacter haemolyticus ATCC 19194] Length = 286 Score = 41.8 bits (97), Expect = 0.033, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 6/136 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+R ++ + + +F + ++G + I Sbjct: 138 LVLTWVLITLTFIDFDTQLLPDRFTLPLAALGLAINSFAIYTTANSAIWGYVIGFLCLWI 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + +++G I+ + +L +R Sbjct: 198 VYYLFKIFTGKEGMGYGDFKLLAALGAWMGPMLLPL-IVLLSSVVGAIIGIILLKMRGEN 256 Query: 128 NHIPIFGMFVPKSFLM 143 ++ Sbjct: 257 QPFAFGPYIAIAGWIA 272 >gi|241667108|ref|YP_002985192.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862565|gb|ACS60230.1| peptidase A24A prepilin type IV [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 187 Score = 41.8 bits (97), Expect = 0.033, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 2/115 (1%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 C + AA+ D IPN V+ L + A + G I L +I FA Sbjct: 20 CTMTAAVLDHRHGHIPNAVTYPCLLGGFMLAAVSG-GLAGIGLAFAGLFAAGLIFIIAFA 78 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 GGGDVKL+ + G P+ + ++GG+++VF + R+ + + Sbjct: 79 AGSCGGGDVKLMAALGAILGLWPA-IDVTLASLMVGGVIAVFSMARRVQWSVLAR 132 >gi|193076176|gb|ABO10791.2| type 4 prepilin-like proteins leader peptide processing enzyme [Acinetobacter baumannii ATCC 17978] Length = 286 Score = 41.8 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+R ++ + + F + L+G + I Sbjct: 138 LVLTWVLIALTFIDFDTQLLPDRFTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + ++LG I+ + +L +R Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256 Query: 128 NHIPIFGMFVPKSF 141 + Sbjct: 257 QPFAFGPYIAIAGW 270 >gi|226951822|ref|ZP_03822286.1| type 4 prepilin-like protein leader peptide processing enzyme [Acinetobacter sp. ATCC 27244] gi|226837362|gb|EEH69745.1| type 4 prepilin-like protein leader peptide processing enzyme [Acinetobacter sp. ATCC 27244] Length = 285 Score = 41.8 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 6/136 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+R ++ + + +F + ++G + I Sbjct: 137 LVLTWVLITLTFIDFDTQLLPDRFTLPLAALGLAINSFAIYTTANSAIWGYVIGFLCLWI 196 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + +++G I+ + +L +R Sbjct: 197 VYYLFKIFTGKEGMGYGDFKLLAALGAWMGPMLLPL-IVLLSSVVGAIIGIILLKMRGEN 255 Query: 128 NHIPIFGMFVPKSFLM 143 ++ Sbjct: 256 QPFAFGPYIAIAGWIA 271 >gi|145299829|ref|YP_001142670.1| flp pilus prepilin peptidase [Aeromonas salmonicida subsp. salmonicida A449] gi|88866584|gb|ABD57352.1| FlpA [Aeromonas salmonicida subsp. salmonicida A449] gi|142852601|gb|ABO90922.1| flp pilus prepilin peptidase [Aeromonas salmonicida subsp. salmonicida A449] Length = 138 Score = 41.8 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 23/147 (15%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 + +SDLF IPN +V+ L + L L LL+GL + Sbjct: 11 LMACWCLVSDLFERRIPNLAVLVLALWALWLLPFNPLSLTLALLTLLLGLFA-------Y 63 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV-RMITNHIPIFGM 135 G GD KLL +G + + L ++A+ GG+LS+ L R + P+ Sbjct: 64 HRGWCGAGDSKLLAVCL--YGASGRWPELLLWMALSGGVLSLVCLVYARFRPSPEPVT-- 119 Query: 136 FVPKSFLMKNKIPYGIAISMGGLISYP 162 +PYG AI ++ P Sbjct: 120 -----------VPYGFAILWAASLTTP 135 >gi|307545300|ref|YP_003897779.1| prepilin peptidase [Halomonas elongata DSM 2581] gi|307217324|emb|CBV42594.1| prepilin peptidase [Halomonas elongata DSM 2581] Length = 283 Score = 41.8 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 10/147 (6%) Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLL 63 + +A L L+ A+ DL ++P+ +++ +L L + L + Sbjct: 123 PTLEAAFILGACLTLLALAVIDLRLQILPDILTLPLLWAGLLYHLLFQPLGLPDAVLGAM 182 Query: 64 VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 +G + F MG GD KLL + WFGW +L L ++ GG L Sbjct: 183 LGYLALWGFHGLFQRLTGKRGMGHGDFKLLAALGAWFGWP--YLPLLLVLSAAGGALFGL 240 Query: 120 I---LTVRMITNHIPIFGMFVPKSFLM 143 + L R +P ++M Sbjct: 241 VAQALDPRRRGQPMPFGPWLALAGWIM 267 >gi|116255767|ref|YP_771600.1| putative transmembrane pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260415|emb|CAK03519.1| putative transmembrane pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 187 Score = 41.8 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 2/115 (1%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 C + AA+ D IPN V+ L + A + G I L L +I FA Sbjct: 20 CTMTAAVLDHRHGHIPNAVTYPCLLGGFMLAAVSG-GLAGIGLAFAGLLAAGLIFIIAFA 78 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 GGGDVKL+ + G P+ + + GG+++VF + R+ + + Sbjct: 79 AGSCGGGDVKLMAALGAILGLWPA-IDVTLASLMAGGVIAVFSMARRVQWSVLAR 132 >gi|299771790|ref|YP_003733816.1| Type 4 prepilin-like proteins leader peptide-processing enzyme [Acinetobacter sp. DR1] gi|298701878|gb|ADI92443.1| Type 4 prepilin-like proteins leader peptide-processing enzyme [Acinetobacter sp. DR1] Length = 286 Score = 41.8 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 6/146 (4%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIA 59 M + + L+ + L+ D + ++P+R ++ + + F + Sbjct: 126 MMFGPTIQMLLGLVLTWVLITLTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAI 185 Query: 60 LHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI 115 L+G + I + F MG GD KLL + W G L + ++LG I Sbjct: 186 WGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAI 244 Query: 116 LSVFILTVRMITNHIPIFGMFVPKSF 141 + + +L +R + Sbjct: 245 IGIILLKLRNDNQPFAFGPYIAIAGW 270 >gi|53723204|ref|YP_112189.1| pilus assembly-related outer membrane protein [Burkholderia pseudomallei K96243] gi|76817950|ref|YP_336466.1| type IV prepilin peptidase-like protein [Burkholderia pseudomallei 1710b] gi|126457458|ref|YP_001076986.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a] gi|226193972|ref|ZP_03789573.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pakistan 9] gi|254182586|ref|ZP_04889180.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655] gi|254187137|ref|ZP_04893652.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur 52237] gi|254192600|ref|ZP_04899039.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13] gi|254264336|ref|ZP_04955201.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a] gi|254296482|ref|ZP_04963938.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e] gi|52213618|emb|CAH39672.1| putative pilus assembly-related outer membrane protein [Burkholderia pseudomallei K96243] gi|76582423|gb|ABA51897.1| type IV prepilin peptidase-like protein [Burkholderia pseudomallei 1710b] gi|126231226|gb|ABN94639.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106a] gi|157806354|gb|EDO83524.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 406e] gi|157934820|gb|EDO90490.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pasteur 52237] gi|169649358|gb|EDS82051.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei S13] gi|184213121|gb|EDU10164.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1655] gi|225933917|gb|EEH29903.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei Pakistan 9] gi|254215338|gb|EET04723.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1710a] Length = 179 Score = 41.8 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 16/161 (9%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L V AA DL S IPNR+ + L L+ L + A L + Sbjct: 12 LCVTLLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAGLL 71 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP- 131 F+ M GDVKL+ + W G T + L ++GG ++ ++ R + Sbjct: 72 LPFYLVRGMAAGDVKLMLAIGAWVGPTLA-LHIALATFVVGGAWALAVVAGRGRFRKLLA 130 Query: 132 --------------IFGMFVPKSFLMKNKIPYGIAISMGGL 158 +PYG+AI++G L Sbjct: 131 NLRHLFAGAALLRVASAARAAPEIDSVGMLPYGVAIAIGTL 171 >gi|91775998|ref|YP_545754.1| peptidase A24A, prepilin type IV [Methylobacillus flagellatus KT] gi|91709985|gb|ABE49913.1| peptidase A24A, prepilin type IV [Methylobacillus flagellatus KT] Length = 164 Score = 41.8 bits (97), Expect = 0.037, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 6/137 (4%) Query: 23 ALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79 A D IPN +S+ L ++ A + + I+ + F++ +A Sbjct: 13 AYYDFSQRRIPNLLSLGALIFGLGYMSVAGQVFYYGQPISSAFWGLAVSFLLTIPGYATR 72 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139 +GGGDVKLL + AV G +F+ G+L+ ++ ++ V + Sbjct: 73 TLGGGDVKLLAAIAVLCGVKVVVATFVLASL---GVLAALLVWWQLSPQLSTSGWAAVSR 129 Query: 140 SFLMKNKIPYGIAISMG 156 + IP+G A+++ Sbjct: 130 ESNNRRYIPFGAALALA 146 >gi|73539228|ref|YP_299595.1| peptidase A24A, prepilin type IV [Ralstonia eutropha JMP134] gi|72122565|gb|AAZ64751.1| Peptidase A24A, prepilin type IV [Ralstonia eutropha JMP134] Length = 166 Score = 41.8 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 15/161 (9%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 +I +DL +PN + +L + L I+ LL + + Sbjct: 1 MIAVLFCAATLWTDLAYRRVPNALLAAVLVALSLALLTGNAPEPAISARLLGAGLGAAVT 60 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 +A M GDVK L + F ++ ++LG + +V + Sbjct: 61 LPVYALGRMAAGDVKFLAVAGL-FTGPQGLVTVWVVGSLLGLVHAVLAYALDSRPLSALR 119 Query: 133 FGMFVP--------------KSFLMKNKIPYGIAISMGGLI 159 M + F IPY ++ G L+ Sbjct: 120 QRMPAALRVHTAIRPASQSSRQFSKVRGIPYAAYLAAGMLV 160 >gi|134298911|ref|YP_001112407.1| peptidase A24A domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051611|gb|ABO49582.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Desulfotomaculum reducens MI-1] Length = 248 Score = 41.8 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 1/126 (0%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 + L+ L+ + D+ +IP+ V +V L F +D+ L Sbjct: 97 QALAMLVFFSVLMVTTVIDIHHQIIPDSVLLVGGLLGLPIIFFQSLDHLKWGLIGFFAAG 156 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + ++ + MGGGD+KL ++ G P ++ LF +LGG + + +L + Sbjct: 157 LLLLLIALLSKGGMGGGDIKLAAVMGLYLGLKPVAIA-LFLSFLLGGAVGILLLATGIKG 215 Query: 128 NHIPIF 133 P+ Sbjct: 216 RKDPVP 221 >gi|323695018|ref|ZP_08109164.1| prepilin peptidase [Clostridium symbiosum WAL-14673] gi|323500914|gb|EGB16830.1| prepilin peptidase [Clostridium symbiosum WAL-14673] Length = 250 Score = 41.8 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 1/130 (0%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 + I L+ ++ D + IP +IV+ + L+ + D+ + L+ + ++ Sbjct: 105 YAIAASSLLVLSVIDWRTFEIPVGCNIVIGTAGLVNLWFNRQDWLTYMIGLICVSGLLLL 164 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 MGGGDVKL+ + + GW L+F ILG ++ + ++ ++ + Sbjct: 165 ILLLSKGRAMGGGDVKLMAAAGLLLGWQNVILAFACGC-ILGSVIHLVLMKIQGKERMLA 223 Query: 132 IFGMFVPKSF 141 + Sbjct: 224 FGPYLSAGIW 233 >gi|283850944|ref|ZP_06368229.1| peptidase A24A prepilin type IV [Desulfovibrio sp. FW1012B] gi|283573590|gb|EFC21565.1| peptidase A24A prepilin type IV [Desulfovibrio sp. FW1012B] Length = 165 Score = 41.8 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85 D+ S IPNR++ + + + L L F++ F ++G GD Sbjct: 25 DMRSRRIPNRITFPAMLVLVALHGAFS-GLPGLGEAALGLLGGFLVFLIPHLFGLLGAGD 83 Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145 VKL+ G + + L+ + F ++ GG+ L + G + Sbjct: 84 VKLMAVVGAGLG-SQALLTAVLFTSVAGGLQFFVWLAWLRLARPGATAGYRLC------- 135 Query: 146 KIPYGIAISMGGL 158 YG AI+ G L Sbjct: 136 ---YGPAIAAGAL 145 >gi|327484918|gb|AEA79325.1| Leader peptidase (Prepilin peptidase) [Vibrio cholerae LMA3894-4] Length = 291 Score = 41.8 bits (97), Expect = 0.041, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 7/121 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64 VF+ L + L+ A D + ++P+++++ +L + A L + + + Sbjct: 128 VFAVALLFFTYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + + +++G I + Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246 Query: 121 L 121 L Sbjct: 247 L 247 >gi|262190163|ref|ZP_06048445.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae CT 5369-93] gi|262033954|gb|EEY52412.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae CT 5369-93] Length = 310 Score = 41.8 bits (97), Expect = 0.041, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 7/121 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64 VF+ L + L+ A D + ++P+++++ ++ + A L + + + Sbjct: 147 VFAVALLFFTYVLIAATFIDFDTLLLPDQLTLPLMWGGIALALLGFSPVSLSDAVIGAMA 206 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + + +++G I + Sbjct: 207 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 265 Query: 121 L 121 L Sbjct: 266 L 266 >gi|197334382|ref|YP_002155267.1| hypothetical protein VFMJ11_0513 [Vibrio fischeri MJ11] gi|197315872|gb|ACH65319.1| conserved hypothetical protein [Vibrio fischeri MJ11] Length = 109 Score = 41.8 bits (97), Expect = 0.041, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 11/98 (11%) Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 HLL LI+ + F F FNI+ GD+K + ++ L + + + Sbjct: 16 HLLSPLIILFVGFILFKFNIIAAGDIKYYAAMSLMIEQQYLLL-----------VTCIIL 64 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + ++ +PYG+AIS+G L Sbjct: 65 CLGGLQAYCQYCIYKLTGNERWIERGVPYGVAISIGSL 102 >gi|307730009|ref|YP_003907233.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1003] gi|307584544|gb|ADN57942.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1003] Length = 173 Score = 41.8 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 2/149 (1%) Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHL 62 +S M S + A+SD S I N + + L + L A + + A Sbjct: 5 KSAMQVSIALFLFMIWCACVAISDCRSRRISNGLVVTGLIAAFLCALFGICPFGISAAQA 64 Query: 63 LVGLIVFIICFC-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 G V + FA +MG DVK+ W G + L ++L G+ ++++L Sbjct: 65 AAGAAVGLAVLLPLFALGVMGAADVKVFAVLGAWCGI-HALLGLWAVASVLAGLHALWVL 123 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYG 150 + P+ Sbjct: 124 AAARPRIASLSGRRAPTFELAGRRATPFA 152 >gi|148253066|ref|YP_001237651.1| hypothetical protein BBta_1528 [Bradyrhizobium sp. BTAi1] gi|146405239|gb|ABQ33745.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 184 Score = 41.8 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L +A DL +IPN + + + + A L + L+ LLV +IVF + Sbjct: 17 IVLGISAAIDLKDRVIPNELVVAIAV--IGFAQGLALRPGLVWFSLLVAIIVFFGLWIVA 74 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 I+GGGD+KL+++ + L + + GG+LS F L +P Sbjct: 75 HVKIIGGGDLKLISAVTLLVPPD-RVGQLLIDIVLAGGLLSCFYLAAHYGLKRLP 128 >gi|77359346|ref|YP_338921.1| leader peptide processing enzyme [Pseudoalteromonas haloplanktis TAC125] gi|76874257|emb|CAI85478.1| Type 4 prepilin-like proteins leader peptide processing enzyme [Pseudoalteromonas haloplanktis TAC125] Length = 291 Score = 41.8 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66 + +++ + LV D+ ++P+++++ ++ L+ A L + + G Sbjct: 133 QALLYIAITWALVALTFIDIDHMLLPDQITLPLVWLALIAAVLGYTVTPTDAIIGAACGY 192 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL GW S L+ + +++G I+ + +LT Sbjct: 193 LSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGW-QSLLTIILLSSVVGAIIGIALLT 251 Query: 123 VRMITNHIPIF 133 ++ PI Sbjct: 252 IQGKDKATPIP 262 >gi|153214086|ref|ZP_01949220.1| leader peptidase PilD [Vibrio cholerae 1587] gi|124115512|gb|EAY34332.1| leader peptidase PilD [Vibrio cholerae 1587] Length = 291 Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 7/121 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64 VF+ L + L+ A D + ++P+++++ ++ + A L + + +V Sbjct: 128 VFAVALLFFSYVLIAATFIDFDTLLLPDQLTLPLMWGGIALALLGFSPVSLSDAVIGAMV 187 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + + +++G I + Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246 Query: 121 L 121 L Sbjct: 247 L 247 >gi|296110011|ref|YP_003616960.1| Peptidase A24A domain protein [Methanocaldococcus infernus ME] gi|295434825|gb|ADG13996.1| Peptidase A24A domain protein [Methanocaldococcus infernus ME] Length = 331 Score = 41.4 bits (96), Expect = 0.045, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 18/155 (11%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + ++I F L+ A+++D+ +IP++ I M L + Y ++G+ Sbjct: 3 LLDIAYIINFFILILASITDIKEKIIPHKYVIAMFLINLP------IGYYFFGFDAIIGM 56 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAV-----WFGWTPSFLSFLFFVAILGGILSVFIL 121 I I + MGGGDVKL T+ A F + P + ++ +++L + Sbjct: 57 ISTFILCLILSIG-MGGGDVKLFTALAPIFSYDLFYFLPKPILYMIAISMLLVAIYPLFK 115 Query: 122 TVRMITNHIPIFGMFVPKSF------LMKNKIPYG 150 R I ++ + K IPYG Sbjct: 116 IFRRYYKEILYSSFYLATVMGILYYIIYKLNIPYG 150 >gi|160936838|ref|ZP_02084203.1| hypothetical protein CLOBOL_01727 [Clostridium bolteae ATCC BAA-613] gi|158440219|gb|EDP17965.1| hypothetical protein CLOBOL_01727 [Clostridium bolteae ATCC BAA-613] Length = 251 Score = 41.4 bits (96), Expect = 0.046, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (39%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + SA+ + L+ AA D IP+ + I++L ++ + L + Sbjct: 98 MESALMCMFSSILITAAFIDARHMYIPDGIHILILILSCISLAAGSGPAIINRLGGSLLA 157 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 F+ + +G GDVKL ++ + G P+ + L G +V ++ R Sbjct: 158 GGFLALVNLLSRGGVGWGDVKLFAASGLLIGAAPAITALLMGYVAAGLWYAVPLVRGR 215 >gi|304405037|ref|ZP_07386697.1| peptidase A24A prepilin type IV [Paenibacillus curdlanolyticus YK9] gi|304345916|gb|EFM11750.1| peptidase A24A prepilin type IV [Paenibacillus curdlanolyticus YK9] Length = 159 Score = 41.4 bits (96), Expect = 0.046, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 +V A +D+ S IPN ++ + LL L + L+ + + + Sbjct: 9 VLVVIAFATDVRSMRIPNWLTGGSFAAALLAHVLA-AGVGGLQFALVGAVAGLVPLVTMY 67 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 A +G GDVKL + W G T + + + G L V +L +R + Sbjct: 68 AIKGVGAGDVKLFAALGAWLG-TSDIIQLFVYSILYAGALGVLMLVIRRL 116 >gi|325124300|gb|ADY83823.1| type 4 prepilin-like proteins leader peptide processing enzyme [Acinetobacter calcoaceticus PHEA-2] Length = 243 Score = 41.4 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+R ++ + + F + L+G + I Sbjct: 95 LVLTWILIALTFIDFDTQLLPDRFTLPLAALGLGINTFSIYTSPNSAIWGYLIGFLCLWI 154 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + ++LG I+ + +L +R Sbjct: 155 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 213 Query: 128 NHIPIFGMFVPKSF 141 + Sbjct: 214 QPFAFGPYIAIAGW 227 >gi|154686942|ref|YP_001422103.1| hypothetical protein RBAM_025120 [Bacillus amyloliquefaciens FZB42] gi|154352793|gb|ABS74872.1| ComC [Bacillus amyloliquefaciens FZB42] Length = 250 Score = 41.4 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 34/87 (39%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +DL +IP++V + L F+ +D V ++ F + +G G Sbjct: 112 TDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFIMFVSKGGIGAG 171 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAI 111 DVKL + G ++F V I Sbjct: 172 DVKLFGVIGLTLGVKLVLIAFFLSVMI 198 >gi|20808458|ref|NP_623629.1| hypothetical protein TTE2059 [Thermoanaerobacter tengcongensis MB4] gi|20517076|gb|AAM25233.1| hypothetical protein TTE2059 [Thermoanaerobacter tengcongensis MB4] Length = 143 Score = 41.4 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLV 64 M + L +AA +D I N V +L +L AFL + + +++L Sbjct: 1 MHSITLSLPVVVLTAYAAWTDCKRKEIDNWVPAAILTYGIILNAFLNPVGFIESIVYMLT 60 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106 + + +GGGDVKLLT+ A +FG L + Sbjct: 61 AFAILFTIYII-TNGQLGGGDVKLLTALAFFFGSDIMVLLLI 101 >gi|126735711|ref|ZP_01751456.1| hypothetical protein RCCS2_17586 [Roseobacter sp. CCS2] gi|126714898|gb|EBA11764.1| hypothetical protein RCCS2_17586 [Roseobacter sp. CCS2] Length = 152 Score = 41.4 bits (96), Expect = 0.050, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 1/109 (0%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M + L LV A + ++ + IPN +++V F + ++ L + + Sbjct: 1 MNLEMIPLAMGAVLVVAMVLEIKTGRIPNWLTLVPFALFAVLLVMVEDRTPLY-WQMGLA 59 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114 + FI FA G G VKLL TA++ + +F +FL F+AI G Sbjct: 60 VGTFIFGLVLFAIGGSGAGAVKLLAGTALFVPFENAFFTFLLFLAIFFG 108 >gi|315181063|gb|ADT87977.1| hypothetical protein vfu_A02864 [Vibrio furnissii NCTC 11218] Length = 162 Score = 41.4 bits (96), Expect = 0.050, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81 + D IPN + +++ + ++ LL ++L + L+VF++ M Sbjct: 3 VGVYDARQHRIPNILLGLLMLAGVIQTLLLDQTFDLFVGQIGAMLMVFVLALMCHMAGWM 62 Query: 82 GGGDVKLLTSTAVWFGWTPSF--LSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 GDVKLL G+ ++ AI G++ + + + + + G+ V Sbjct: 63 APGDVKLLAVIGFLTGFGHLADTFFYIGVSAIFIGVMYGMLNYLLLFKESVSVVGVRV 120 >gi|261856175|ref|YP_003263458.1| prepilin peptidase [Halothiobacillus neapolitanus c2] gi|261836644|gb|ACX96411.1| Prepilin peptidase [Halothiobacillus neapolitanus c2] Length = 294 Score = 41.4 bits (96), Expect = 0.050, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 23/160 (14%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL---TAFLLGMDYELIALHLLVG 65 + + + L+ AA+ DL + ++P+ +++ ++ LL T F + E + + G Sbjct: 134 AIAVWVFSWILLAAAIIDLKTTLLPDNLTLPLMWLGLLLALTGFGTTVTLENAVIGAMAG 193 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + L + G ++ + ++ Sbjct: 194 YLSLWSIYWLFKLLTGREGMGYGDFKLLAALGAWLGWQQLPMVLLLSAGV-GAVVGIGMI 252 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 IP IP+G ++ GL+SY Sbjct: 253 LFLKHDKRIP---------------IPFGPYLASAGLLSY 277 >gi|288560490|ref|YP_003423976.1| type IV leader peptidase family protein [Methanobrevibacter ruminantium M1] gi|288543200|gb|ADC47084.1| type IV leader peptidase family protein [Methanobrevibacter ruminantium M1] Length = 302 Score = 41.4 bits (96), Expect = 0.050, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 7/99 (7%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVM-----LGSFLLTAFLLGMDYELIALHLLVGL 66 F++ F L+ A DL +IPN++S+ + L + L+ L Y + + L+ Sbjct: 22 FIMVFFTLLLANYYDLKYGIIPNKLSVFLMTFGILINVLILIVLNNRLYAIFYVSYLI-- 79 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105 I+FII F + + GGGD+KL S + F Sbjct: 80 IIFIISFVLWKISFWGGGDLKLFCSIGFSLPFIDILNHF 118 >gi|83590393|ref|YP_430402.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Moorella thermoacetica ATCC 39073] gi|83573307|gb|ABC19859.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Moorella thermoacetica ATCC 39073] Length = 247 Score = 41.4 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 +L LV A+ DL +IP+ + + +L + L AL V F++ Sbjct: 99 YLFLGAVLVAASFIDLEHYLIPDSLVVTGACGGILFSLLARDVGFRAALGGSVAAAGFLL 158 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 + MGGGDVKL ++ GW P LF + GG+ V +L + P Sbjct: 159 LVAVISNGGMGGGDVKLAGMVGLFLGW-PLASLALFLSLVTGGLAGVCLLVSGLKKREDP 217 Query: 132 IF 133 + Sbjct: 218 LP 219 >gi|103485821|ref|YP_615382.1| peptidase A24A, prepilin type IV [Sphingopyxis alaskensis RB2256] gi|98975898|gb|ABF52049.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Sphingopyxis alaskensis RB2256] Length = 260 Score = 41.4 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 20/148 (13%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVFIICFCFFAFN----I 80 D +P+R+++++ + +L A +LG + LVG + +A Sbjct: 127 DARHFWLPDRLTLLLAVTGVLLAGPMLGTSLVDRWVGALVGGGTLALLAWLYARARRREG 186 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140 MGGGD KL+ +T W GW L +A LGGI+ + Sbjct: 187 MGGGDPKLVAATGAWLGWQALPLM--LLLASLGGII-------------WALVVQRKGDQ 231 Query: 141 FLMKNKIPYGIAISMGGLISYPDSYLFK 168 L + ++P+G+ + + P L Sbjct: 232 PLGERRVPFGMFLCGAAFAAVPLWPLIA 259 >gi|225570268|ref|ZP_03779293.1| hypothetical protein CLOHYLEM_06364 [Clostridium hylemonae DSM 15053] gi|225161063|gb|EEG73682.1| hypothetical protein CLOHYLEM_06364 [Clostridium hylemonae DSM 15053] Length = 230 Score = 41.4 bits (96), Expect = 0.052, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMD-YELIALHLLVGLIVFIIC 72 L AL+DL IP+ ++ ++AF L G+ +E A L V L ++ Sbjct: 88 FFCILAAVALTDLGRREIPDMYCAAVVILAFISAFTLPGLPVWERAAGSLCVSLPFLVVA 147 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 GGGDVKL+ + ++ G + ++ + + G + +L+ R + Sbjct: 148 VAV--PGAFGGGDVKLMAACGLFLGVKITAVAAAAGILLAGCAGAGLVLSGRRGKRGVLA 205 Query: 133 FGMFV 137 G F+ Sbjct: 206 LGPFL 210 >gi|32473551|ref|NP_866545.1| type IV prepilin peptidase CpaA [Rhodopirellula baltica SH 1] gi|32398231|emb|CAD78326.1| similar to type IV prepilin peptidase CpaA [Rhodopirellula baltica SH 1] gi|327540754|gb|EGF27321.1| peptidase A24A prepilin type IV [Rhodopirellula baltica WH47] Length = 185 Score = 41.4 bits (96), Expect = 0.052, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 17/164 (10%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+ AA+ D +PN ++ + F+ G + + LL + ++ Sbjct: 19 VVLIVAAVIDGMILKVPNWLTFPFIICGWAHCFIQG-GFPELGYSLLGTFVGMMLLLPLR 77 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 MG GDVKLL W G + +F + G + + I H F Sbjct: 78 NVGGMGAGDVKLLAGIGAWCGTMITLKAFAATAIVGGIMAAFMIWKSGAWVKHYAQFWKI 137 Query: 137 VPKSFLMKNK----------------IPYGIAISMGGLISYPDS 164 + + ++ +PYGI +++G +I + + Sbjct: 138 MDEWRTIRKPEQLAAIARERKPTMYLLPYGIPMAIGTIIYFAAT 181 >gi|259417425|ref|ZP_05741344.1| peptidase A24A prepilin type IV [Silicibacter sp. TrichCH4B] gi|259346331|gb|EEW58145.1| peptidase A24A prepilin type IV [Silicibacter sp. TrichCH4B] Length = 136 Score = 41.4 bits (96), Expect = 0.052, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 4/126 (3%) Query: 30 AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLL 89 IPN + ++ L+ + LL I + F+A ++G GD K Sbjct: 1 MRIPNWTVDTLALIYIFLGLLVMPTWADYGWQLLHLPAGIAIGYLFYASGLVGAGDAKFA 60 Query: 90 TSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149 + A + + L + F A L L R+ + +S+ + K P Sbjct: 61 GAAAPYVAFADLKLIIIIFAA----ALLSGFLAHRLARHTPLRRLAPDWQSWNVGVKFPM 116 Query: 150 GIAISM 155 G+ + Sbjct: 117 GLCLGA 122 >gi|39997141|ref|NP_953092.1| type 4 prepilin-like proteins leader peptide processing enzyme [Geobacter sulfurreducens PCA] gi|39984031|gb|AAR35419.1| type 4 prepilin-like proteins leader peptide processing enzyme [Geobacter sulfurreducens PCA] gi|307634972|gb|ADI84877.2| type IV prepilin-like proteins leader peptide processing enzyme [Geobacter sulfurreducens KN400] Length = 259 Score = 41.4 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 68/155 (43%), Gaps = 21/155 (13%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 A + LV + DL +IP+ +S+ ++ F+L+ FL + + + + G Sbjct: 103 AALFVFCSALVAISFIDLDHQIIPDVISLPGIVLGFVLSFFLPWLGWLNSLIGIAAGGGS 162 Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 ++ + MGGGD+KLL + GW + +F +++G ++ + ++ ++ Sbjct: 163 LLLVAWLYERLTGKEGMGGGDIKLLAMMGAFLGWR-AVPFIIFASSLVGSVIGLTLMMLQ 221 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 + + IP+G +++G L+ Sbjct: 222 KKDSKLA---------------IPFGPFLALGALL 241 >gi|78222179|ref|YP_383926.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Geobacter metallireducens GS-15] gi|78193434|gb|ABB31201.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Geobacter metallireducens GS-15] Length = 259 Score = 41.4 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 8/130 (6%) Query: 11 VFLIPPFCLVFAALS--DLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLI 67 ++ FC A++ DL +IP+ +S+ ++ F + L + ++ + ++ G Sbjct: 102 FLVLFVFCSALVAVTFIDLDHQLIPDVISLPGIVVGFACSFALPWLGWKSSLIGIVAGGG 161 Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 + + MGGGD+KLL + GW S +F +++G ++ V ++ V Sbjct: 162 SLLSVARLYELLTKKEGMGGGDIKLLAMMGAFLGWR-SVPFIIFASSLIGSVIGVTLMLV 220 Query: 124 RMITNHIPIF 133 + + + I Sbjct: 221 QKKDSKLAIP 230 >gi|207739461|ref|YP_002257854.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609] gi|206592837|emb|CAQ59743.1| prepilin peptidase protein [Ralstonia solanacearum IPO1609] Length = 154 Score = 41.4 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 13/132 (9%) Query: 36 VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVW 95 + + + T L D+ + L G I +A MG GDVK T + Sbjct: 10 LVLSIALVKFGTVMALAYDWRDVWL---GGAIALAGFLPLYALGWMGAGDVKFFTVAGLL 66 Query: 96 FGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP---------KSFLMKNK 146 GW ++ ++L G+ ++ IL +R P M + + Sbjct: 67 AGW-HGLVAIWLVSSVLAGVHALAILLLRRADASAPSAWMLMRVCPALARWDPGHAGRRG 125 Query: 147 IPYGIAISMGGL 158 IPY +++G L Sbjct: 126 IPYAAYMAIGLL 137 >gi|78357401|ref|YP_388850.1| hypothetical protein Dde_2358 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219806|gb|ABB39155.1| membrane protein, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 185 Score = 41.4 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 17/185 (9%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + + + ++ L+ ++D+ + IPN ++ + + L + + L Sbjct: 1 MQTVMPILLVSILMTDVVTDIRAMRIPNWLTFPAMIAGLAGHGAA-GGADGLLFSLAGLG 59 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 + + F +MG GDVKL+ + + G F +F+ + + GG ++ +L + Sbjct: 60 LGAALMLLPFLAGVMGAGDVKLMGAAGAFLGAQGVFGAFI-WTSFAGGAYALGVLLFHLP 118 Query: 127 TNHIPIFGMFVPKSFLMKNK---------------IPYGIAISMGGLISYPDSYLFKVAL 171 + + ++ + YG+AI+ G + S S Sbjct: 119 QLRAVGRALHTSFTTMLVTGEMTYTPATGGKALPRLCYGVAIAAGTVTSMYFSGALDAVF 178 Query: 172 MGLSA 176 G+ A Sbjct: 179 SGIMA 183 >gi|291533367|emb|CBL06480.1| Type IV leader peptidase family [Megamonas hypermegale ART12/1] Length = 135 Score = 41.4 bits (96), Expect = 0.054, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 2/106 (1%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 LI L A D + I N+ + + ++ + +D E I LL+ LI+F + Sbjct: 9 LIVCMYLGKIAWVDFKTLKIKNKSLLYLGLILVVRLMIFNIDLEKIIYALLINLIIFCVI 68 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 + F+ +MG GD+KL A+W + P + ++ I GGI+++ Sbjct: 69 Y-FYPKQLMGAGDLKLALVLALWCNY-PQCIVAIYVSFIFGGIVAI 112 >gi|260431092|ref|ZP_05785063.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] gi|260414920|gb|EEX08179.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] Length = 181 Score = 41.4 bits (96), Expect = 0.054, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 20/152 (13%) Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLL----------------GMDYELIALHLLV 64 + A +D+ I N + + F++ + G + A L Sbjct: 21 YVAFTDMREMRIKNHAVVALACVFVIVGLIALPPWSGDWIPGAIGPFGFALPVYAWQLFH 80 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 ++V + A +MG GD K + A + +L +A G + T R Sbjct: 81 LVVVLLFGILLNAAGVMGAGDAKFCAAAAPFVWLGDLYLVLAILMAATLGAFA----THR 136 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMG 156 + + +S+ + P G+A++ G Sbjct: 137 LAKHSRLRQFAPTWESWDRGKQFPMGLALAGG 168 >gi|308174504|ref|YP_003921209.1| membrane protease and transmethylase [Bacillus amyloliquefaciens DSM 7] gi|307607368|emb|CBI43739.1| membrane protease and transmethylase [Bacillus amyloliquefaciens DSM 7] gi|328554423|gb|AEB24915.1| membrane protease and transmethylase [Bacillus amyloliquefaciens TA208] gi|328912827|gb|AEB64423.1| membrane protease and transmethylase [Bacillus amyloliquefaciens LL3] Length = 250 Score = 41.0 bits (95), Expect = 0.056, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 16/140 (11%) Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM 81 ++DL +IP++V + L ++ +D V +I F + + Sbjct: 109 VTVTDLQYMLIPDKVLLFFLPLLIVGRIFSPLDSWYAGFAGAVCGFFLLIFIMFVSKGGI 168 Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF 141 G GDVKL + G ++F V I+G + + Sbjct: 169 GAGDVKLFGVIGLALGVKLVLIAFFLSV-IIGAVYGMC---------------AAAGGRL 212 Query: 142 LMKNKIPYGIAISMGGLISY 161 K P+ AI+ G +SY Sbjct: 213 GKKQPFPFAPAIAAGSAVSY 232 >gi|255657461|ref|ZP_05402870.1| putative type IV prepilin leader peptidase [Clostridium difficile QCD-23m63] gi|296449056|ref|ZP_06890846.1| possible prepilin peptidase [Clostridium difficile NAP08] gi|296879879|ref|ZP_06903852.1| possible prepilin peptidase [Clostridium difficile NAP07] gi|296262149|gb|EFH08954.1| possible prepilin peptidase [Clostridium difficile NAP08] gi|296429168|gb|EFH15042.1| possible prepilin peptidase [Clostridium difficile NAP07] Length = 260 Score = 41.0 bits (95), Expect = 0.057, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 18/160 (11%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI---VMLGSFLLTAFLLGMDYELIALHLL 63 + +L+ L+ D+ +IP+ + I + F L + + +I + Sbjct: 99 TSTVYYLVLVSLLIIITFIDIDHFIIPDEILIFGAIFAIIFNLLFKEIPVKDSIIGFFIC 158 Query: 64 VGLIVFIICFCFFAFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 G + I+ F MGGGD+KL ++ G S L+ L V + G + + ++ Sbjct: 159 GGSVWLIVLLIEFVIKKECMGGGDIKLFAMLGLYMGVKNSLLTALLSVYV-GAVYGICVI 217 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + K + IPYG IS+G LI+ Sbjct: 218 IISKT------------KGKEYNSIIPYGPFISVGALITI 245 >gi|239500938|ref|ZP_04660248.1| Type II secretory pathway, prepilin signal peptidase PulO [Acinetobacter baumannii AB900] Length = 286 Score = 41.0 bits (95), Expect = 0.058, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+R ++ + + F + L+G + I Sbjct: 138 LVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + ++LG I+ + +L +R Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256 Query: 128 NHIPIFGMFVPKSF 141 + Sbjct: 257 QPFAFGPYIAIAGW 270 >gi|15615597|ref|NP_243901.1| late competence protein required for processing and translocation [Bacillus halodurans C-125] gi|10175657|dbj|BAB06754.1| late competence protein required for processing and translocation [Bacillus halodurans C-125] Length = 162 Score = 41.0 bits (95), Expect = 0.058, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLT-AFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMG 82 +SDL +IP+R+ + F+L A L ++ A V + + N +G Sbjct: 26 VSDLVYMIIPDRIILFFAILFVLFRATLAPLNPWWDAWAGAVVGYILLFIVYLIYPNGIG 85 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 GGDVKL T GW + ++ + ++ G I + + I PI Sbjct: 86 GGDVKLFTVLGFVLGWKLTLVA-IMLSSLCGAIGGGVGMMLGRIKRREPIP 135 >gi|311278339|ref|YP_003940570.1| Prepilin peptidase [Enterobacter cloacae SCF1] gi|308747534|gb|ADO47286.1| Prepilin peptidase [Enterobacter cloacae SCF1] Length = 273 Score = 41.0 bits (95), Expect = 0.061, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 17/157 (10%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIV 68 V + L A+ D+ ++P+ + +L L+ A L + L ++ + Sbjct: 118 VLFLFAVLLCLVAI-DVDHLLLPDSLVFTLLWGGLVFAVGGLTPVSLRDAVLGAVITWLF 176 Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 F+ MG GD+KL + W GW + L ++ + G+L +L R Sbjct: 177 LSAVVLIFSVVRKKEGMGAGDIKLYGALGGWLGWQQ--MPALLVLSSVLGMLMFMLLKKR 234 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 +++ + + IP+G AI+ GG Y Sbjct: 235 RVSD--------IDTDGHIYQVIPFGPAIATGGFSLY 263 >gi|115379232|ref|ZP_01466348.1| peptidase, A24 (type IV prepilin peptidase) family [Stigmatella aurantiaca DW4/3-1] gi|310822228|ref|YP_003954586.1| type IV leader peptidase family protein [Stigmatella aurantiaca DW4/3-1] gi|115363764|gb|EAU62883.1| peptidase, A24 (type IV prepilin peptidase) family [Stigmatella aurantiaca DW4/3-1] gi|309395300|gb|ADO72759.1| Type IV leader peptidase family protein [Stigmatella aurantiaca DW4/3-1] Length = 178 Score = 41.0 bits (95), Expect = 0.062, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 66/166 (39%), Gaps = 14/166 (8%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVS---IVMLGSFLLTAFLLGMDYELIALHLLV 64 +A++ + LV + ++D+ I + V+ + + L +G + + Sbjct: 5 QTALWTVLGAALVISVVTDVLHHRILDIVTYPLMALALGVRLAFEGVGDLETGLVSGGVS 64 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 G+ + + MG GDVKL+ G+ P+ ++ F++++G +V L + Sbjct: 65 GVGLAALLLPGALRGRMGWGDVKLMGGVGAVLGF-PAVMAAAAFISLVGAFQAVVTLIWK 123 Query: 125 MITNHIPIFG----------MFVPKSFLMKNKIPYGIAISMGGLIS 160 M K+ + IPYG+AI++G + Sbjct: 124 GEVWDTLASAGRRWAVRARLMRTEKALAPQRHIPYGVAIALGTFWA 169 >gi|256810876|ref|YP_003128245.1| Peptidase A24A domain protein [Methanocaldococcus fervens AG86] gi|256794076|gb|ACV24745.1| Peptidase A24A domain protein [Methanocaldococcus fervens AG86] Length = 340 Score = 41.0 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 7/100 (7%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + V+++ L+ A+++D+ +IP++ +I M+ L + Y +V Sbjct: 3 LLGIVYIVNFILLILASITDIGERIIPHKYTIAMIIMNLA------VGYYYFGFDAIVAF 56 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106 I + MGGGDVKL T+ A F + SF+ ++ Sbjct: 57 FSTFILCLILSIG-MGGGDVKLFTALAPIFAYPNSFVFYI 95 >gi|169797414|ref|YP_001715207.1| type 4 prepilin-like proteins leader peptide processing enzyme [Acinetobacter baumannii AYE] gi|213155772|ref|YP_002317817.1| type IV pilus prepilin peptidase PilD [Acinetobacter baumannii AB0057] gi|215484852|ref|YP_002327091.1| Type 4 prepilin-like proteins leader peptide-processing enzyme [Acinetobacter baumannii AB307-0294] gi|301345145|ref|ZP_07225886.1| Type 4 prepilin-like proteins leader peptide-processing enzyme [Acinetobacter baumannii AB056] gi|301510694|ref|ZP_07235931.1| Type 4 prepilin-like proteins leader peptide-processing enzyme [Acinetobacter baumannii AB058] gi|301594954|ref|ZP_07239962.1| Type 4 prepilin-like proteins leader peptide-processing enzyme [Acinetobacter baumannii AB059] gi|332854394|ref|ZP_08435346.1| type 4 prepilin-like protein leader peptide-processing enzyme [Acinetobacter baumannii 6013150] gi|332867625|ref|ZP_08437757.1| type 4 prepilin-like protein leader peptide-processing enzyme [Acinetobacter baumannii 6013113] gi|169150341|emb|CAM88238.1| type 4 prepilin-like proteins leader peptide processing enzyme (Protein secretion protein XCPA)[Includes: Leader peptidase (Prepilin peptidase); N-methyltransferase ] [Acinetobacter baumannii AYE] gi|213054932|gb|ACJ39834.1| type IV pilus prepilin peptidase PilD [Acinetobacter baumannii AB0057] gi|213987959|gb|ACJ58258.1| Type 4 prepilin-like proteins leader peptide-processing enzyme [Acinetobacter baumannii AB307-0294] gi|332728070|gb|EGJ59461.1| type 4 prepilin-like protein leader peptide-processing enzyme [Acinetobacter baumannii 6013150] gi|332733819|gb|EGJ64966.1| type 4 prepilin-like protein leader peptide-processing enzyme [Acinetobacter baumannii 6013113] Length = 286 Score = 41.0 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+R ++ + + F + L+G + I Sbjct: 138 LVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + ++LG I+ + +L +R Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256 Query: 128 NHIPIFGMFVPKSF 141 + Sbjct: 257 QPFAFGPYIAIAGW 270 >gi|221197778|ref|ZP_03570824.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2M] gi|221204664|ref|ZP_03577681.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2] gi|221175521|gb|EEE07951.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2] gi|221181710|gb|EEE14111.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD2M] Length = 166 Score = 41.0 bits (95), Expect = 0.064, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 2/146 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M F A SD+ +PN + + L L+AFL + + L +G Sbjct: 1 MAQLIFIGAFLAWAAFVAASDVRVRRVPNSLVLGGLALAFLSAFLNANPFGISPLSATIG 60 Query: 66 LIVFIICFC-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 +++ +I F FF +MG D+K+ W G + L ++ GI ++ ++ V Sbjct: 61 MLIGLIAFVPFFLLRVMGAADLKVFAVLGAWCG-AHALLWLWIVASLAAGIHALVLMLVS 119 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYG 150 PY Sbjct: 120 RTPIRALWPQGQPVLMLGGHRATPYA 145 >gi|260556306|ref|ZP_05828525.1| type IV pilus prepilin peptidase PilD [Acinetobacter baumannii ATCC 19606] gi|260410361|gb|EEX03660.1| type IV pilus prepilin peptidase PilD [Acinetobacter baumannii ATCC 19606] Length = 286 Score = 41.0 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+R ++ + + F + L+G + I Sbjct: 138 LVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + ++LG I+ + +L +R Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256 Query: 128 NHIPIFGMFVPKSF 141 + Sbjct: 257 QPFAFGPYIAIAGW 270 >gi|291521717|emb|CBK80010.1| Flp pilus assembly protein, protease CpaA [Coprococcus catus GD/7] Length = 175 Score = 41.0 bits (95), Expect = 0.066, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 7/145 (4%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLV 64 M+ L+ + AA+ D S +PN + + L ++L + G + Sbjct: 1 MILQMTLLLF---MAAAAVKDYRSYWVPNELILAGALNGYILRFWADGSGGVIDG--AAG 55 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 +++FI+C F ++ G GD+KL+ + AV+ G S + L + G ++S+ + Sbjct: 56 MVLIFILCAGLFVLSMFGAGDLKLMMAMAVYMGPVKS-VRILIVSLVFGAVISLLKMLKY 114 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPY 149 I + + + PY Sbjct: 115 DICKERFRYLLHYAQRIQRHGAEPY 139 >gi|300709417|ref|YP_003735231.1| peptidase A24A prepilin type IV [Halalkalicoccus jeotgali B3] gi|299123100|gb|ADJ13439.1| peptidase A24A prepilin type IV [Halalkalicoccus jeotgali B3] Length = 326 Score = 41.0 bits (95), Expect = 0.068, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 12/116 (10%) Query: 19 LVFAALSDLFSAMIP--NRVSIVMLGSFLLTA------FLLGMDYELIALHLLVGLI-VF 69 L +AA D+ + +P + L + L F G+ + + + L+ V Sbjct: 7 LAWAAHRDVRTRRVPARTWTPLFALAAVLFVWDGIASYFAGGLTWAYFLVGAAISLLLVI 66 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF--LSFLF-FVAILGGILSVFILT 122 + F+ F GG D K L A+ F P++ +L VA G ++ IL Sbjct: 67 PAAYGFWRFGAFGGADAKALIVLALLFPTYPTYEIGPYLVPVVATPTGAFALTILA 122 >gi|153830662|ref|ZP_01983329.1| leader peptidase PilD [Vibrio cholerae 623-39] gi|229514052|ref|ZP_04403514.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae TMA 21] gi|254226638|ref|ZP_04920218.1| leader peptidase PilD [Vibrio cholerae V51] gi|125620857|gb|EAZ49211.1| leader peptidase PilD [Vibrio cholerae V51] gi|148873871|gb|EDL72006.1| leader peptidase PilD [Vibrio cholerae 623-39] gi|229349233|gb|EEO14190.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio cholerae TMA 21] Length = 291 Score = 41.0 bits (95), Expect = 0.068, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 7/121 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64 VF L + L+ A D + ++P+++++ +L + A L + + + Sbjct: 128 VFGVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMA 187 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + + +++G I + Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246 Query: 121 L 121 L Sbjct: 247 L 247 >gi|320527729|ref|ZP_08028899.1| peptidase, A24 family protein [Solobacterium moorei F0204] gi|320131894|gb|EFW24454.1| peptidase, A24 family protein [Solobacterium moorei F0204] Length = 158 Score = 41.0 bits (95), Expect = 0.069, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 4/104 (3%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG----MDYELIALHLLVGLIV 68 ++ L D IPN + I M+ F++ A ++ + + + + G + Sbjct: 18 VLLFSLLWCVCYIDYLIMEIPNEIHIGMIILFIIHACMINEINIQPWIRMLVMFVCGYFI 77 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112 FI+C F +GGGD+KLL+ +++ + ++ + Sbjct: 78 FILCEKLFHKECIGGGDLKLLSCMSLFLSFQKIWIVLSIACILA 121 >gi|262280752|ref|ZP_06058535.1| type IV pilus prepilin peptidase PilD [Acinetobacter calcoaceticus RUH2202] gi|262257652|gb|EEY76387.1| type IV pilus prepilin peptidase PilD [Acinetobacter calcoaceticus RUH2202] Length = 286 Score = 41.0 bits (95), Expect = 0.069, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+R ++ + + F + L+G + I Sbjct: 138 LVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFSIYTTPTSAIWGYLIGFLCLWI 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + ++LG I+ + +L +R Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256 Query: 128 NHIPIFGMFVPKSF 141 + Sbjct: 257 QPFAFGPYIAIAGW 270 >gi|260550515|ref|ZP_05824725.1| type IV pilus prepilin peptidase PilD [Acinetobacter sp. RUH2624] gi|260406430|gb|EEW99912.1| type IV pilus prepilin peptidase PilD [Acinetobacter sp. RUH2624] Length = 286 Score = 41.0 bits (95), Expect = 0.069, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+R ++ + + F + L+G + I Sbjct: 138 LVLTWILIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + ++LG I+ + +L +R Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256 Query: 128 NHIPIFGMFVPKSF 141 + Sbjct: 257 QPFAFGPYIAIAGW 270 >gi|153827237|ref|ZP_01979904.1| leader peptidase PilD [Vibrio cholerae MZO-2] gi|149738851|gb|EDM53187.1| leader peptidase PilD [Vibrio cholerae MZO-2] Length = 291 Score = 41.0 bits (95), Expect = 0.070, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 7/121 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLV 64 VF L + L+ A D + ++P+++++ +L + A L + + +V Sbjct: 128 VFGVALLFFSYVLIAATFIDFDTLLLPDQLTLPLLWGGIALALLGFSPVSLSDAVIGAMV 187 Query: 65 GLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 G + + F MG GD KLL + W GW + + +++G I + Sbjct: 188 GYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPV-IVLLSSVVGVIFGLIQ 246 Query: 121 L 121 L Sbjct: 247 L 247 >gi|20094140|ref|NP_613987.1| prepilin-cleaving (type IV) signal peptidase [Methanopyrus kandleri AV19] gi|19887147|gb|AAM01917.1| Prepilin-cleaving (type IV) signal peptidase [Methanopyrus kandleri AV19] Length = 324 Score = 41.0 bits (95), Expect = 0.071, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 FL AA++DL ++PNR++ + + + A + +D + LL + F + Sbjct: 5 FLAGLAVATVAAITDLKWGIVPNRLTYPAIVAGAIYAAV--IDPSHLGYALLDAGVAFGV 62 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWF 96 ++GGGDVKLL S ++ Sbjct: 63 TLVLNVLGVLGGGDVKLLPSLTLFL 87 >gi|229057034|ref|ZP_04196428.1| Peptidase A24A domain protein [Bacillus cereus AH603] gi|228720311|gb|EEL71887.1| Peptidase A24A domain protein [Bacillus cereus AH603] Length = 249 Score = 41.0 bits (95), Expect = 0.072, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++DL +IPNR+ I +L + + + +L + + + C + +GG Sbjct: 122 VTDLVYMLIPNRILIWFALLLILECIFVPLVTWIDSLAGSGTIFILLYCMQKIYPDGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GDVKLL+ V + GG +++F+ + + + + K + Sbjct: 182 GDVKLLSLLGC-------------IVGVKGGFITLFLASCFSLCSFGIGIAL---KRINI 225 Query: 144 KNKIPYGIAISMGGL 158 + IP+G IS+G + Sbjct: 226 RTPIPFGPFISLGAI 240 >gi|254177482|ref|ZP_04884137.1| putative fimbriae assembly-related protein [Burkholderia mallei ATCC 10399] gi|160698521|gb|EDP88491.1| putative fimbriae assembly-related protein [Burkholderia mallei ATCC 10399] Length = 149 Score = 40.6 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 19/148 (12%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ + L AL+DL + + + A + A H +G F + Sbjct: 7 LVASWTLASLALADLRTRRL----------ATFAVALVGAPGDGGFASHAALGAAAFALG 56 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F + GGDVKL +W G + + VA G+ + + V + P Sbjct: 57 AAMFRAGWIAGGDVKLAAVVFLWAGPAHA-----WPVAFAIGVGGLAVGAVCIAAGRAPR 111 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + F +PYG+A++ GGL++ Sbjct: 112 VLAW----FAPARGVPYGVALAAGGLLA 135 >gi|113476284|ref|YP_722345.1| type 4 prepilin peptidase 1 [Trichodesmium erythraeum IMS101] gi|110167332|gb|ABG51872.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Trichodesmium erythraeum IMS101] Length = 273 Score = 40.6 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 19/136 (13%) Query: 19 LVFAALSDLFSAMIPNRV--SIVMLGSFL--LTAFLLGMDYELIALHLLVGLIVFIICFC 74 L+ ++ DL + +PN + S +++G F LT F + +L++G+I ++ Sbjct: 114 LLALSMIDLDTMTLPNPLTQSGLIVGLFFQMLTTFEENFQVNNLVNYLIIGIIGAVVGLW 173 Query: 75 FF---------AFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA----ILGGILSVF 119 F AF +MGGGD KL W GW L+ A + GG +++ Sbjct: 174 LFDLISIFGSIAFGQTVMGGGDAKLAAMIGAWLGWKYLLLTCFLACAMGALVGGGAIALR 233 Query: 120 ILTVRMITNHIPIFGM 135 +L R P M Sbjct: 234 LLDRRQPIPFGPFLAM 249 >gi|125973850|ref|YP_001037760.1| peptidase A24A, prepilin type IV [Clostridium thermocellum ATCC 27405] gi|256004303|ref|ZP_05429285.1| peptidase A24A prepilin type IV [Clostridium thermocellum DSM 2360] gi|281418011|ref|ZP_06249031.1| peptidase A24A prepilin type IV [Clostridium thermocellum JW20] gi|125714075|gb|ABN52567.1| peptidase A24A, prepilin type IV [Clostridium thermocellum ATCC 27405] gi|255991737|gb|EEU01837.1| peptidase A24A prepilin type IV [Clostridium thermocellum DSM 2360] gi|281409413|gb|EFB39671.1| peptidase A24A prepilin type IV [Clostridium thermocellum JW20] gi|316939953|gb|ADU73987.1| peptidase A24A prepilin type IV [Clostridium thermocellum DSM 1313] Length = 209 Score = 40.6 bits (94), Expect = 0.080, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + + + L ++L D ++ N++ + L+ A L + I +L Sbjct: 67 LEMIRYAVLYILLASSSLKDYKERIVSNKLVAAGIVLGLVMAALDAEPEKFIQSVILFIA 126 Query: 67 IVFIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 I I+ FA +G GD KL+ + ++ G T +S LF+ IL GI + +L ++ Sbjct: 127 IALIMSLISFATKGGVGMGDTKLIAVSGLYTGLT-GIISVLFYSFILSGITGIVLLILKK 185 >gi|262166466|ref|ZP_06034203.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio mimicus VM223] gi|262026182|gb|EEY44850.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Vibrio mimicus VM223] Length = 288 Score = 40.6 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 6/99 (6%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65 F+ L+ + L+ A DL + ++P+++++ +L S + A L + + + G Sbjct: 129 FAVAALLFSYVLIAATFIDLDTMLLPDQLTLPLLWSGIALALFGLSPVSLTDAVIGSMAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100 + + F MG GD KLL + W GW Sbjct: 189 YLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQ 227 >gi|229166238|ref|ZP_04293997.1| Peptidase A24A domain protein [Bacillus cereus AH621] gi|228617183|gb|EEK74249.1| Peptidase A24A domain protein [Bacillus cereus AH621] Length = 249 Score = 40.6 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 45/115 (39%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++DL +IPNR+ I +L + + + +L + + + C + +GG Sbjct: 122 VTDLVYMLIPNRILIWFALLLILECIFVPLVTWIDSLAGSGTIFILLYCMQKIYPDGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 GDVKLL+ G F++ + I R+ FG F+ Sbjct: 182 GDVKLLSLLGCIVGVKGVFITLFLASCFSLCFFGIGIALKRINIRTPIPFGPFIS 236 >gi|319782180|ref|YP_004141656.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168068|gb|ADV11606.1| peptidase A24A prepilin type IV [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 179 Score = 40.6 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 9/148 (6%) Query: 18 CLVFAALSDLFSAMIPNR---VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 L A D + I NR + + + LL L + + L GL++F+ Sbjct: 16 LLARIAWVDFTTQKISNRDVLLLLCLGAGGLLLLSLQSGSWWDMGLSAGAGLLLFVAFLP 75 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 F+A +G GDVKL+ L ++L + ++ + +P Sbjct: 76 FWALRKIGAGDVKLIAVVPFLISGGA-----LAVFSVLLLVFALATAAIVKNPFLLPAGA 130 Query: 135 MFVPKSFLMKNK-IPYGIAISMGGLISY 161 + L + +P+G+ IS+ + + Sbjct: 131 FRLIVQHLDRKGMVPFGVPISLAAICTL 158 >gi|293610128|ref|ZP_06692429.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827360|gb|EFF85724.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 286 Score = 40.6 bits (94), Expect = 0.083, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+R ++ + + F + L+G + I Sbjct: 138 LVLTWILIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + ++LG I+ + +L +R Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLLGAIIGIILLKLRNDN 256 Query: 128 NHIPIFGMFVPKSF 141 + Sbjct: 257 QPFAFGPYIAIAGW 270 >gi|315303312|ref|ZP_07873945.1| type IV leader peptidase family protein [Listeria ivanovii FSL F6-596] gi|313628327|gb|EFR96827.1| type IV leader peptidase family protein [Listeria ivanovii FSL F6-596] Length = 201 Score = 40.6 bits (94), Expect = 0.084, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 3/102 (2%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L F ++D+ +PN + I+ + L FL + +++ +I + + F F Sbjct: 72 LAFFVITDILYMHVPNSIIILFSVTMLFIYFLFHQPLLNLVYSIIMSIIFYGLFFFVFRK 131 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 +G GD+KL + + G+ + FLFF++IL G + + I Sbjct: 132 G-IGLGDIKLFIILSTFLGFQTGY--FLFFLSILAGTIVLLI 170 >gi|188586929|ref|YP_001918474.1| peptidase A24A prepilin type IV [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351616|gb|ACB85886.1| peptidase A24A prepilin type IV [Natranaerobius thermophilus JW/NM-WN-LF] Length = 145 Score = 40.6 bits (94), Expect = 0.085, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 18/149 (12%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 LI + A D+ IPN++++ + L + L+G + L ++ + Sbjct: 12 LILIVVMALALYFDIKEFRIPNKITLSAIV-IGLCSGLIGNGVSGLYTSFLGAIVGLALL 70 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F MG GDVKLLT+ L +AI+GG+++++ + Sbjct: 71 LIPFFLGGMGAGDVKLLTAIG-AIKGVEFVLYTAAAMAIIGGLIALYYYLILKQRKMFF- 128 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161 PYGIAI G L+S Sbjct: 129 ---------------PYGIAIVFGALVSL 142 >gi|229016650|ref|ZP_04173587.1| Peptidase A24A domain protein [Bacillus cereus AH1273] gi|229022865|ref|ZP_04179385.1| Peptidase A24A domain protein [Bacillus cereus AH1272] gi|228738400|gb|EEL88876.1| Peptidase A24A domain protein [Bacillus cereus AH1272] gi|228744640|gb|EEL94705.1| Peptidase A24A domain protein [Bacillus cereus AH1273] Length = 249 Score = 40.6 bits (94), Expect = 0.087, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 44/115 (38%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++DL +IPNR+ I +L + + + ++ + + + C +GG Sbjct: 122 VTDLVYMLIPNRILIWFAFLLILECIFVPLVTWIDSIAGSGTIFILLYCMQKIHPAGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 GDVKLL+ G F++ + I R+ FG F+ Sbjct: 182 GDVKLLSLLGFIIGVKGIFITLFLASCFSLCFFGIGIALKRIKIRTPIPFGPFIS 236 >gi|307258828|ref|ZP_07540560.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306867179|gb|EFM99035.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 98 Score = 40.6 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 5/92 (5%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 + S + + L+ +DL +I NRV + +L + ++L+ ++ Sbjct: 3 LFISTLIAVMVCLLLVVCWTDLRYRLISNRVIMALLLVIIPFSYLM-----YGSISWFPA 57 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG 97 ++ +I F F N++G GDVKLL + Sbjct: 58 ILCLVIGFVLFLLNVIGAGDVKLLAVLMLAVP 89 >gi|148975960|ref|ZP_01812749.1| hypothetical protein VSWAT3_06601 [Vibrionales bacterium SWAT-3] gi|145964705|gb|EDK29958.1| hypothetical protein VSWAT3_06601 [Vibrionales bacterium SWAT-3] Length = 96 Score = 40.6 bits (94), Expect = 0.090, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 11/81 (13%) Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139 +G GD+K + ++ L+F+ A GGIL++ L + + Sbjct: 18 WIGAGDIKYVVILSLTIPVNDLLLAFIL-TAFSGGILAISYL----------VSKKLIRN 66 Query: 140 SFLMKNKIPYGIAISMGGLIS 160 + IPYGIAIS+G ++ Sbjct: 67 KVGFQEGIPYGIAISIGFYLA 87 >gi|294501410|ref|YP_003565110.1| late competence protein ComC [Bacillus megaterium QM B1551] gi|294351347|gb|ADE71676.1| late competence protein ComC [Bacillus megaterium QM B1551] Length = 263 Score = 40.6 bits (94), Expect = 0.090, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 1/131 (0%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + V L L +SD+ ++PN+V + L FLL + ++ +L Sbjct: 97 LELIVILTFVSFLTIIVVSDIAYMIVPNKVLLFFLPIFLLERLFIPLNSWSDSLMGGGIA 156 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 + F + +G GD+KL + G LS LF ++GG +S+ L ++ Sbjct: 157 FFLLFLIAFLSRGGLGEGDIKLYALIGIVLGVKLVLLS-LFLAILIGGTVSIGALLMKKA 215 Query: 127 TNHIPIFGMFV 137 +PI + Sbjct: 216 KVGVPIPFVPF 226 >gi|194366094|ref|YP_002028704.1| peptidase A24A prepilin type IV [Stenotrophomonas maltophilia R551-3] gi|194348898|gb|ACF52021.1| peptidase A24A prepilin type IV [Stenotrophomonas maltophilia R551-3] Length = 181 Score = 40.6 bits (94), Expect = 0.090, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 2/107 (1%) Query: 23 ALSDLFSAMIPNR--VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80 A+SDL++ +PN +S ++ L+ A H+ + + F A Sbjct: 16 AISDLYARRVPNTWLLSACVIAVVLIVAGQFSAPRLPWGPHVAGAALGLVALLPFHALRW 75 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 MG GDVK + + GW ++ G ++ +++ R+ Sbjct: 76 MGAGDVKFFSVLGLMLGWQALLPIWIAASLAAGAHAAIVLVSRRLGA 122 >gi|115351453|ref|YP_773292.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD] gi|115281441|gb|ABI86958.1| peptidase A24A, prepilin type IV [Burkholderia ambifaria AMMD] Length = 166 Score = 40.6 bits (94), Expect = 0.091, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 2/138 (1%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FIIC 72 I A D+ ++ N + I + L+++ + + + L+G++V + Sbjct: 9 IFFAWAALVAAGDIRFRLVRNSLVICGGTAALVSSLIHANPFGISTGQALIGMLVGLVSF 68 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F FA +MG DVK+ W G P L ++ G+ + ++ + Sbjct: 69 FPLFAMRVMGAADVKVFAVLGAWCGL-PILLWLWVIASLAAGVHVLGLMLLTRTPLGALW 127 Query: 133 FGMFVPKSFLMKNKIPYG 150 + + PY Sbjct: 128 VRGLPAMALAGRRSTPYA 145 >gi|254977129|ref|ZP_05273601.1| putative type IV prepilin leader peptidase [Clostridium difficile QCD-66c26] gi|255094458|ref|ZP_05323936.1| putative type IV prepilin leader peptidase [Clostridium difficile CIP 107932] gi|255316209|ref|ZP_05357792.1| putative type IV prepilin leader peptidase [Clostridium difficile QCD-76w55] gi|255518871|ref|ZP_05386547.1| putative type IV prepilin leader peptidase [Clostridium difficile QCD-97b34] gi|255652050|ref|ZP_05398952.1| putative type IV prepilin leader peptidase [Clostridium difficile QCD-37x79] gi|260685024|ref|YP_003216309.1| putative type IV prepilin leader peptidase [Clostridium difficile CD196] gi|260688682|ref|YP_003219816.1| putative type IV prepilin leader peptidase [Clostridium difficile R20291] gi|306521787|ref|ZP_07408134.1| putative type IV prepilin leader peptidase [Clostridium difficile QCD-32g58] gi|260211187|emb|CBA66662.1| putative type IV prepilin leader peptidase [Clostridium difficile CD196] gi|260214699|emb|CBE07352.1| putative type IV prepilin leader peptidase [Clostridium difficile R20291] Length = 260 Score = 40.6 bits (94), Expect = 0.092, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 18/160 (11%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLL 63 + +L+ L+ D+ +IP+++ I F L + + ++ + + Sbjct: 99 TSTIYYLVLVSLLIIITFIDIDHFIIPDKILIFGAIFSMIFNLLFKEIPVKDSILGVFIC 158 Query: 64 VGLIVFIICFCFFAFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 G + I+ F MGGGD+KL ++ G L+ L V + G + + ++ Sbjct: 159 GGSVWIIVLLIEFVIKKECMGGGDIKLFAMLGLYMGVKNGLLTALLSVYV-GAVYGICVI 217 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + I + IPYG IS+G LI+ Sbjct: 218 IISRIKGK------------EYNSVIPYGPFISIGALITI 245 >gi|260900212|ref|ZP_05908607.1| type IV prepilin leader peptidase [Vibrio parahaemolyticus AQ4037] gi|308110274|gb|EFO47814.1| type IV prepilin leader peptidase [Vibrio parahaemolyticus AQ4037] Length = 216 Score = 40.6 bits (94), Expect = 0.093, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65 F+ + F L+ A DL + ++P+++++ + + + A + + + + + G Sbjct: 56 FTVALIFFTFFLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 115 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW S + +++G I + L Sbjct: 116 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLVQL 174 Query: 122 TVRMI 126 ++ Sbjct: 175 RLQKQ 179 >gi|303248281|ref|ZP_07334543.1| peptidase A24A prepilin type IV [Desulfovibrio fructosovorans JJ] gi|302490306|gb|EFL50218.1| peptidase A24A prepilin type IV [Desulfovibrio fructosovorans JJ] Length = 165 Score = 40.6 bits (94), Expect = 0.094, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 12/135 (8%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85 D+ + IPN ++ + + LL + + L FI+ F ++G GD Sbjct: 25 DIRTKRIPNAITFPVAAALLLLHGVFS-GTTGLTSSALGLAGGFIVFLIPHLFGVLGAGD 83 Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145 VKL+ G T + L+ + F +I GG L + G + Sbjct: 84 VKLMAMVGAGLG-TQALLTAVLFTSIAGGAQFFVWLAWMRLAGTRKGRGYRLC------- 135 Query: 146 KIPYGIAISMGGLIS 160 YG AI+ G L + Sbjct: 136 ---YGPAIAAGALAT 147 >gi|262374020|ref|ZP_06067297.1| type IV pilus prepilin peptidase PilD [Acinetobacter junii SH205] gi|262311031|gb|EEY92118.1| type IV pilus prepilin peptidase PilD [Acinetobacter junii SH205] Length = 286 Score = 40.3 bits (93), Expect = 0.098, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 6/136 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 LI + L+ D + ++P+R ++ + + F + L+G + I Sbjct: 138 LILTWTLIALTFIDFDTQLLPDRFTLPLAALGLGINTFAIYTTASAAIWGFLIGFLCLWI 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + +++G I+ + ++ +R Sbjct: 198 VYYLFKIITGKEGMGYGDFKLLAALGAWMGPMMLPL-IVLLSSMVGAIIGIMLMKMRGEN 256 Query: 128 NHIPIFGMFVPKSFLM 143 ++ Sbjct: 257 QPFAFGPYIAIAGWIA 272 >gi|254443680|ref|ZP_05057156.1| Bacterial Peptidase A24 N-terminal domain family [Verrucomicrobiae bacterium DG1235] gi|198257988|gb|EDY82296.1| Bacterial Peptidase A24 N-terminal domain family [Verrucomicrobiae bacterium DG1235] Length = 293 Score = 40.3 bits (93), Expect = 0.098, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 57/173 (32%), Gaps = 26/173 (15%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL------------LGMD 54 + + +I LV + D IP+R SI + + L G Sbjct: 106 LKALCIMIFAAMLVCGSFIDFDHMEIPDRFSIGLAVIGFALSVLIPELHGFDRADFAGAS 165 Query: 55 YELIALHLLVGLI-------VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLF 107 +L LI + ++ MG GDVKLL + GW + Sbjct: 166 INATLQSILGILIGSGTILWIALLAEIVLRKEAMGFGDVKLLGGIGAFLGWQGAIF---- 221 Query: 108 FVAILGGIL-SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 +I GG L L + I + L+ IP+G ++ G L+ Sbjct: 222 --SIFGGALIGCVGLLLWAIAKRMISSKRTSNDEALLGRHIPFGPMLAGGALL 272 >gi|325290041|ref|YP_004266222.1| Prepilin peptidase [Syntrophobotulus glycolicus DSM 8271] gi|324965442|gb|ADY56221.1| Prepilin peptidase [Syntrophobotulus glycolicus DSM 8271] Length = 261 Score = 40.3 bits (93), Expect = 0.099, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 22/152 (14%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L L+ + D+ + +PN + G FLL A +G+ + +G + C Sbjct: 118 LAFASLLIALSFIDMETMRLPNSLV---TGLFLLGAIKIGVFSKPGFFSAGLGAVGTAGC 174 Query: 73 FCFFAF---NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 F +G GDVKL + + G+ + L + I + I+T R N Sbjct: 175 FLILHLIYNGGIGLGDVKLAGALGFFLGFPDIIFAVLVGSLLGTLIALLLIVTGRKGLNE 234 Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 IP+G +++G + + Sbjct: 235 ----------------PIPFGPFLAVGAFLMF 250 >gi|190192161|dbj|BAG48296.1| type 4 prepilin-like proteins leader peptide processing enzyme [Microcystis aeruginosa NIES-843] Length = 269 Score = 40.3 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 27/146 (18%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF------- 78 D + +PN ++ L ++ LLG ++L + ++ F Sbjct: 121 DFDTMTLPNCLTQSGLVLGIVFQTLLGWQNNQSVIYLFSAIASAVLGVWLFDLIRWGGSF 180 Query: 79 ----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 MGGGD KL W GW ++ AI G + + + + + Sbjct: 181 ALRQQAMGGGDAKLAAMIGAWLGWQALLVTAFLACAI-GAAIGMTGIFLGKMA------- 232 Query: 135 MFVPKSFLMKNKIPYGIAISMGGLIS 160 K IP+G +++G L+S Sbjct: 233 --------KKQAIPFGPLLALGALMS 250 >gi|149927149|ref|ZP_01915406.1| prepilin cysteine protease (C20) PilD [Limnobacter sp. MED105] gi|149824088|gb|EDM83309.1| prepilin cysteine protease (C20) PilD [Limnobacter sp. MED105] Length = 279 Score = 40.3 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%) Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHL 62 V + ++ L+ AL DL + ++P+ +++ +L L F+ + Sbjct: 124 PPGVVALALMVFAASLLALALIDLDTYLLPDSITLPLLWAGLLFNLFVEFVPLASAVSGA 183 Query: 63 LVGLIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 +G +V + + F MG GD KLL + W G T S S + F ++ G + + Sbjct: 184 AMGYLVLWLIYQLFKLATGKEGMGYGDFKLLAAIGAWLGVT-SLFSVVLFASVSGIVFGL 242 Query: 119 FILTVR 124 I T+R Sbjct: 243 IIQTIR 248 >gi|229010694|ref|ZP_04167892.1| Peptidase A24A domain protein [Bacillus mycoides DSM 2048] gi|228750588|gb|EEM00416.1| Peptidase A24A domain protein [Bacillus mycoides DSM 2048] Length = 249 Score = 40.3 bits (93), Expect = 0.10, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 45/115 (39%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++DL +IPNR+ I +L + + + +L + + + C + +GG Sbjct: 122 VTDLVYMLIPNRILIWFALLLILECIFVPLVTWIDSLAGSGTIFILLYCMQKIYPDGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 GDVKLL+ G F++ + I R+ FG F+ Sbjct: 182 GDVKLLSLLGCIVGVKGVFITLFLASCFSLCFFGISIALKRINIRTPIPFGPFIS 236 >gi|299532590|ref|ZP_07045979.1| peptidase A24A, prepilin type IV [Comamonas testosteroni S44] gi|298719393|gb|EFI60361.1| peptidase A24A, prepilin type IV [Comamonas testosteroni S44] Length = 196 Score = 40.3 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 19/152 (12%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDY-ELIALHLLVGLIVFIICFCFFAFNIMGGG 84 DL + IPNR++ LL L + L + + + + +G G Sbjct: 36 DLRTRRIPNRLTFGGAALALLYGLLAPHPHTGGFFWALGGMAVGLALMLPLYLLHALGAG 95 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF--- 141 DVKL+ + G + + FV I GG++++ + + + + Sbjct: 96 DVKLMAMVGSFLGPV-AAWQTVLFVFITGGLVAITYVLWHRTSGKLVRNSAEAMQLLYVN 154 Query: 142 --------------LMKNKIPYGIAISMGGLI 159 +PYG++I++G L Sbjct: 155 VAAGIRPDARSNSAHSVGTLPYGVSIALGTLA 186 >gi|242312119|ref|ZP_04811136.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b] gi|242135358|gb|EES21761.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 1106b] Length = 166 Score = 40.3 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 16/157 (10%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 V AA DL S IPNR+ + L L+ L + A L + F+ Sbjct: 3 LLAVVAASIDLASRRIPNRLIALGLAGALVAQCALPGPHTGFAAWLAGAATGAGLLLPFY 62 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP----- 131 M GDVKL+ + W G T L ++GG ++ ++ R + Sbjct: 63 LVRGMAAGDVKLMLAIGAWVGPT-LALHIALATFVVGGAWALAVVAGRGRFRKLLANLRH 121 Query: 132 ----------IFGMFVPKSFLMKNKIPYGIAISMGGL 158 +PYG+AI++G L Sbjct: 122 LFAGAALLRVASAARAAPEIDSVGMLPYGVAIAIGTL 158 >gi|71278916|ref|YP_271097.1| type 4 prepilin-like proteins leader peptide processing enzyme PilD [Colwellia psychrerythraea 34H] gi|71144656|gb|AAZ25129.1| type 4 prepilin-like proteins leader peptide processing enzyme PilD [Colwellia psychrerythraea 34H] Length = 301 Score = 40.3 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 62/160 (38%), Gaps = 21/160 (13%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFL-LTAFLLGMDYELIALHLLVG 65 + + L+ +CL+ + D ++P+++++ +L L + + + VG Sbjct: 143 ISTLWVLLLTWCLITLTMIDFDHMLLPDQITLPLLWLGLLININGTFIPLPDAVIGAAVG 202 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + F F MG GD KL W GW + + +++G I+ + ++ Sbjct: 203 YMSLFSVFWLFKVITGKEGMGYGDFKLFAVFGAWIGWQLLPI-LILMASVVGAIVGITLM 261 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 K+ + IP+G +++ G I+ Sbjct: 262 LF---------------KNHQREQGIPFGPYLAVAGWITL 286 >gi|162456976|ref|YP_001619343.1| prepilin peptidase [Sorangium cellulosum 'So ce 56'] gi|161167558|emb|CAN98863.1| Prepilin peptidase [Sorangium cellulosum 'So ce 56'] Length = 321 Score = 40.3 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG-- 83 DL IP+ ++I + TA L M + + VG + + F I GG Sbjct: 134 DLEHMFIPDSITIGGAVLGVATASLRSMSFVDALVGAAVGFGIVWLPFVVIYPRIRGGRV 193 Query: 84 ----GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 GD KLL WFGW + L A+ G I+++ +L +R Sbjct: 194 GMGLGDAKLLMLAGAWFGWGGALF-VLGAGAVQGSIIAIAMLILR 237 >gi|332531739|ref|ZP_08407624.1| leader peptidase [Pseudoalteromonas haloplanktis ANT/505] gi|332038715|gb|EGI75157.1| leader peptidase [Pseudoalteromonas haloplanktis ANT/505] Length = 297 Score = 40.3 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66 + +++ + LV D+ ++P+++++ ++ L+ + + + + G Sbjct: 139 QALLYIFVTWILVALTFIDIDHMLLPDQLTLPLVWLALIASVMGYTITPTDAIIGAACGY 198 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL GW S L+ + +++G I+ + +L+ Sbjct: 199 LSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGW-QSLLTIILLSSVVGAIIGIALLS 257 Query: 123 VRMITNHIPIF 133 ++ PI Sbjct: 258 IQGKDKATPIP 268 >gi|126701128|ref|YP_001090025.1| putative type IV prepilin leader peptidase [Clostridium difficile 630] gi|115252565|emb|CAJ70408.1| putative type IV prepilin peptidase, A24A family [Clostridium difficile] Length = 260 Score = 40.3 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 18/160 (11%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLL 63 + +L+ L+ D+ +IP+++ + F L + + ++ + + Sbjct: 99 TSTIYYLVLVSLLIIITFIDIDHFIIPDKILVFGAIFSMIFNLLFKEIPVKDSILGVFIC 158 Query: 64 VGLIVFIICFCFFAFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 G + I+ F MGGGD+KL ++ G L+ L V + G + + ++ Sbjct: 159 GGSVWIIVLLIEFVIKKECMGGGDIKLFAMLGLYMGVKNGLLTALLSVYV-GAVYGICVI 217 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + I + IPYG IS+G LI+ Sbjct: 218 IISRIKGK------------EYNSVIPYGPFISIGALITI 245 >gi|310829690|ref|YP_003962047.1| prepilin peptidase [Eubacterium limosum KIST612] gi|308741424|gb|ADO39084.1| prepilin peptidase [Eubacterium limosum KIST612] Length = 257 Score = 40.3 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 2/128 (1%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + + V L+ L D + IPN + I ++ + F+ + + + + Sbjct: 105 LQAVVGFAVAAILLAVTLIDFDTMTIPNGLVIALIIPVAASYFVFLEPSLISRVIGVFVI 164 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 V ++ GGGDVKL+ GW + L+ F+ ++ G + I +R Sbjct: 165 SVPMLVLSLVIPGGFGGGDVKLMAVAGFLLGWPCTLLA--TFIGLVLGGIVGVIKLIRKS 222 Query: 127 TNHIPIFG 134 FG Sbjct: 223 GEKHMAFG 230 >gi|254492242|ref|ZP_05105416.1| Bacterial Peptidase A24 N-terminal domain family [Methylophaga thiooxidans DMS010] gi|224462567|gb|EEF78842.1| Bacterial Peptidase A24 N-terminal domain family [Methylophaga thiooxydans DMS010] Length = 289 Score = 40.3 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 6/126 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ DL ++P+++++ + F + D + + G + Sbjct: 135 LLLTWSLIALTFIDLDHQLLPDKITLPFVWLGIFFNLFGIYTDLASSVIGAIAGYLSLWS 194 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL W GW + +++G ++ + ++ +R Sbjct: 195 IYHLFRLITGKEGMGYGDFKLLAVLGAWMGW-QYLPMIILLSSLVGAVVGISLILLRRHQ 253 Query: 128 NHIPIF 133 IPI Sbjct: 254 RDIPIP 259 >gi|302392518|ref|YP_003828338.1| peptidase A24A domain protein [Acetohalobium arabaticum DSM 5501] gi|302204595|gb|ADL13273.1| peptidase A24A domain protein [Acetohalobium arabaticum DSM 5501] Length = 254 Score = 40.3 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 3/139 (2%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + ++ L+ AA+ DL +IPNR++ + + L+ + L AL LV Sbjct: 96 IQFMIYAFLSSLLLTAAVIDLKHQIIPNRITYFGIITGLILSLLFKHITIRSALLGLVIP 155 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI--LTVR 124 F++ +G GDVK + + G + +S +F +I+G ++ + + L V+ Sbjct: 156 AGFLLLIAVITKGGLGMGDVKFIAMIGTYLGAKYTLIS-IFIGSIVGSVIGLALIGLGVK 214 Query: 125 MITNHIPIFGMFVPKSFLM 143 + +P + + LM Sbjct: 215 SRKDRVPFGPLLALGNLLM 233 >gi|264678240|ref|YP_003278147.1| peptidase A24A, prepilin type IV [Comamonas testosteroni CNB-2] gi|262208753|gb|ACY32851.1| peptidase A24A, prepilin type IV [Comamonas testosteroni CNB-2] Length = 196 Score = 40.3 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 19/152 (12%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVGLIVFIICFCFFAFNIMGGG 84 DL + IPNR++ + LL L + L + + + + MG G Sbjct: 36 DLRTRRIPNRLTFGGITLALLYGLLAHHPHSGGFFWALGGMAVGLALMLPLYLLHAMGAG 95 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSF--- 141 DVKL+ + G + + FV I GG+ ++ + + + Sbjct: 96 DVKLMAMVGSFLGPAATC-QVVIFVFITGGLAAISYALWHRMAGKLLRNSAEAVQLLYVN 154 Query: 142 --------------LMKNKIPYGIAISMGGLI 159 +PYG++I++G L Sbjct: 155 VAAGIRPDARSNSAHSVGTLPYGVSIALGTLA 186 >gi|255308535|ref|ZP_05352706.1| putative type IV prepilin leader peptidase [Clostridium difficile ATCC 43255] Length = 260 Score = 40.3 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 18/160 (11%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLL 63 + +L+ L+ D+ +IP+++ + F L + + ++ + + Sbjct: 99 TSTIYYLVLVSLLIIITFIDIDHFIIPDKILVFGAIFSMIFNLLFKEIPVKDSILGVFIC 158 Query: 64 VGLIVFIICFCFFAFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 G + I+ F MGGGD+KL ++ G L+ L V + G + + ++ Sbjct: 159 GGSVWIIVILIEFVIKKECMGGGDIKLFAMLGLYMGVKNGLLTALLSVYV-GAVYGICVI 217 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + I + IPYG IS+G LI+ Sbjct: 218 IISRIKGK------------EYNSVIPYGPFISIGALITI 245 >gi|149185490|ref|ZP_01863806.1| peptidase A24A, prepilin type IV [Erythrobacter sp. SD-21] gi|148830710|gb|EDL49145.1| peptidase A24A, prepilin type IV [Erythrobacter sp. SD-21] Length = 163 Score = 40.3 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 10/148 (6%) Query: 5 KMVFSAVFLIPPFCLVFA-ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63 MVF+A + L A AL D+ + +PN + +ML + L AF+ G + +AL L Sbjct: 2 AMVFAAAWFGALGILASAGALLDVCTRKLPNILCAIMLATGLTFAFVGG-GWPALALGLA 60 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 F++ + F+ G GD K T+TA +F F+ +L V++ Sbjct: 61 HVAAAFLLGYLFYLVGTFGAGDAKFYTATAGFFPLWDMLGLFVAITGAGFLLLLVWVFMK 120 Query: 124 RMITNHIPIFGMFVPKSFLMKNKIPYGI 151 R + PK K+PYG+ Sbjct: 121 RSLRTR--------PKDRSDFAKLPYGV 140 >gi|222109981|ref|YP_002552245.1| prepilin peptidase [Acidovorax ebreus TPSY] gi|221729425|gb|ACM32245.1| Prepilin peptidase [Acidovorax ebreus TPSY] Length = 293 Score = 40.3 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + +A + LV A D + ++P+ +++ +L + LL A L ++ + + + Sbjct: 132 LTTAAWCGFSAALVTLACIDWDTTLLPDDITLPLLWAGLLAAVLRWIEVQPVDAVIGAAA 191 Query: 67 IVFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 + ++ F + MG GD KL + WFGW + + + +++G I+ + + Sbjct: 192 GYLSLWSVYWGFKLATGKEGMGYGDFKLFAALGAWFGW-QALVPIILLASVIGAIVGIAM 250 >gi|260892922|ref|YP_003239019.1| peptidase A24A prepilin type IV [Ammonifex degensii KC4] gi|260865063|gb|ACX52169.1| peptidase A24A prepilin type IV [Ammonifex degensii KC4] Length = 159 Score = 39.9 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 7/141 (4%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85 DL IPN + + L L G + + L L+ + + +GGGD Sbjct: 19 DLRWRRIPNWLLLPALLLALALRGWEG-GWPAVWAGLQGWLVGIGLLLLPYLRRGVGGGD 77 Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF---VPKSFL 142 VKLL G + +FL A+LGG++S+++L + + +P S Sbjct: 78 VKLLGVLGACGGPLFALHTFLLG-AVLGGLVSLYLLVRSSLLRPALRVVWWEFFLPGSLP 136 Query: 143 MKNKI--PYGIAISMGGLISY 161 + + + PYG+ ++GG+++ Sbjct: 137 LSSGLFFPYGVCFALGGVLAL 157 >gi|146276353|ref|YP_001166512.1| hypothetical protein Rsph17025_0297 [Rhodobacter sphaeroides ATCC 17025] gi|145554594|gb|ABP69207.1| hypothetical protein Rsph17025_0297 [Rhodobacter sphaeroides ATCC 17025] Length = 163 Score = 39.9 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 5/136 (3%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79 ++ A SD+ IPN+ + + FL+ + + +E L L+V +I F Sbjct: 20 LWVAWSDMKFMKIPNKAVMALALVFLVVGPMA-LPFEDWLWRGLHLLVVLVIGFLMNLGR 78 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139 ++G GD K + A +F L+ A L G + + R + P Sbjct: 79 LVGAGDAKFAAAMAPFFALGDLRLAIGLLAASLLGAFA----SHRGLGLVPPFRSATAEW 134 Query: 140 SFLMKNKIPYGIAISM 155 + P G+A++ Sbjct: 135 ESWRRRDFPMGLALAG 150 >gi|253998221|ref|YP_003050284.1| Prepilin peptidase [Methylovorus sp. SIP3-4] gi|253984900|gb|ACT49757.1| Prepilin peptidase [Methylovorus sp. SIP3-4] Length = 291 Score = 39.9 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 21/153 (13%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIIC 72 + F L+ DL + ++P+ +++ +L LL G D G ++ Sbjct: 142 LFVFALIALTFIDLDTQLLPDDITLPLLWLGLLVNLYGGFTDLSSAVTGAAAGYLILWSI 201 Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 + F MG GD KLL + WFGW + + ++ G ++ + ++ Sbjct: 202 YWLFKLITGKEGMGYGDFKLLAAIGAWFGW-QMLPAVILLSSLAGSVIGIGLILFARHGR 260 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 P IP+G +++GG+ + Sbjct: 261 STP---------------IPFGPYLALGGIAAL 278 >gi|255102714|ref|ZP_05331691.1| putative type IV prepilin leader peptidase [Clostridium difficile QCD-63q42] Length = 260 Score = 39.9 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 18/160 (11%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLL 63 + +L+ L+ D+ +IP+++ + F L + + ++ + + Sbjct: 99 TSTIYYLVLVSLLIIITFIDIDHFIIPDKILVFGAIFSMIFNLLFKEIPVKDSILGVFIC 158 Query: 64 VGLIVFIICFCFFAFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 G + I+ F MGGGD+KL ++ G L+ L V + G + + ++ Sbjct: 159 GGSVWIIVLLIEFVIKKECMGGGDIKLFAMLGLYMGVKNGLLTALLSVYV-GAVYGICVI 217 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + I + IPYG IS+G LI+ Sbjct: 218 IISRIKGK------------EYNSVIPYGPFISIGALITI 245 >gi|107022591|ref|YP_620918.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054] gi|116689540|ref|YP_835163.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424] gi|170732844|ref|YP_001764791.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3] gi|105892780|gb|ABF75945.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia AU 1054] gi|116647629|gb|ABK08270.1| peptidase A24A, prepilin type IV [Burkholderia cenocepacia HI2424] gi|169816086|gb|ACA90669.1| peptidase A24A prepilin type IV [Burkholderia cenocepacia MC0-3] Length = 164 Score = 39.9 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 6/139 (4%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + V AL D+ IPN + I S + A + + V Sbjct: 1 MILLTGVGVFLAWAVLVALEDIRHRRIPNSLVIGGFVSAFVLAGHSPFGISVNQALIGV- 59 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 LI F+ F FF +MG DVK+ W G ++ +L+ + Sbjct: 60 LIGFLSLFPFFVLRVMGAADVKVFAVLGAWCGPHALLWLWIIAS-----LLAFAHAGTLV 114 Query: 126 ITNHIPIFGMFVPKSFLMK 144 P+ ++ +S M+ Sbjct: 115 FATRTPVSALWQRRSPTMQ 133 >gi|206891143|ref|YP_002249074.1| bacterial Peptidase A24 N-terminal domain family [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743081|gb|ACI22138.1| bacterial Peptidase A24 N-terminal domain family [Thermodesulfovibrio yellowstonii DSM 11347] Length = 247 Score = 39.9 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 8/117 (6%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG------MDYELIALHLL 63 LI ++ + D+ +IP+++S+ ++ + + D++ + ++ Sbjct: 98 LFILIFISAMIVVSFIDIDFQIIPDQISVPLIFIGFIFSLFSHGYTGFVSDFKESLIGIV 157 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 VG +I + MGGGD+KL + + GW + L+ +F +++G I+ + I Sbjct: 158 VGGGSLLIVSII-SKGGMGGGDIKLNAAVGAFLGWKAALLT-IFIGSLIGSIVGIII 212 >gi|262370087|ref|ZP_06063414.1| leader peptidase [Acinetobacter johnsonii SH046] gi|262315126|gb|EEY96166.1| leader peptidase [Acinetobacter johnsonii SH046] Length = 286 Score = 39.9 bits (92), Expect = 0.13, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 6/136 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+R ++ + + ++ + + ++G + I Sbjct: 138 LVLTYILIALTFIDFDTQLLPDRYTLTLAALGLGVNSYAIYTTPTMAIWGYIIGFLCLWI 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + + +G I+ + +L VR Sbjct: 198 VYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLI-VLLSSFVGAIIGIILLKVRKEN 256 Query: 128 NHIPIFGMFVPKSFLM 143 ++ Sbjct: 257 QPFAFGPYIAIAGWIA 272 >gi|170696789|ref|ZP_02887898.1| peptidase A24A prepilin type IV [Burkholderia graminis C4D1M] gi|170138305|gb|EDT06524.1| peptidase A24A prepilin type IV [Burkholderia graminis C4D1M] Length = 166 Score = 39.9 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 2/146 (1%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M S V L+ A+ D S I N + +V L + +L A + + A G Sbjct: 1 MQVSFVLLVFMLWCACVAICDYRSRHISNVLVVVGLITAVLCALFNISPFGISAAQAAAG 60 Query: 66 LIVFIICFC-FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 V ++ FFA +MG DVK+ W G + L ++ G+ ++++L Sbjct: 61 AAVGLVALLPFFALGMMGAADVKVFAVLGAWCGV-HALLGLWAVASVAAGLHALWVLVAT 119 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYG 150 + + P+ Sbjct: 120 RTRVAALLQRRAPTFELAGRRSTPFA 145 >gi|89899600|ref|YP_522071.1| peptidase A24A, prepilin type IV [Rhodoferax ferrireducens T118] gi|89344337|gb|ABD68540.1| peptidase A24A, prepilin type IV [Rhodoferax ferrireducens T118] Length = 192 Score = 39.9 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 65/172 (37%), Gaps = 23/172 (13%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIV------MLGSFLLTAFLLGMDYELIAL 60 + + + L+ ++DL S IPN + + + + L + + + Sbjct: 10 IAIMIHTLLAVMLLTVVIADLRSRRIPNTLVLTGLVLAFIAHTIALASGSVPLAGSTWWA 69 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 L L + + + G GDVKL+ + G P+ LS + + + GG+LS+ Sbjct: 70 PLAGLLTGLLPLMPLYFLHATGAGDVKLMGMVGAFVG-APTVLSAVLYTLVAGGLLSLVF 128 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNK----------------IPYGIAISMG 156 + R + F+ + ++ +PY +AI++G Sbjct: 129 MLGRGVAAQTLANVRFLLTDWALRASSGQGARLAPLQTTAARLPYAVAIALG 180 >gi|237733724|ref|ZP_04564205.1| prepilin peptidase [Mollicutes bacterium D7] gi|229383322|gb|EEO33413.1| prepilin peptidase [Coprobacillus sp. D7] Length = 260 Score = 39.9 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 1/109 (0%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L+ + D + IPN + I ++ ++ A L + + + F++ Sbjct: 113 VLAMILLTITMIDFDTMTIPNGLVIALVAPVIVCAVLEPQISISSRVIGMASVSGFMLLM 172 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + GGGD+KL+ GW + L+ + + GGI + +++ Sbjct: 173 TLAIPDCFGGGDMKLMFVCGFMLGWINTLLAGFIGL-LAGGIYASYLMV 220 >gi|297583742|ref|YP_003699522.1| peptidase A24A domain-containing protein [Bacillus selenitireducens MLS10] gi|297142199|gb|ADH98956.1| peptidase A24A domain protein [Bacillus selenitireducens MLS10] Length = 253 Score = 39.9 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 17/156 (10%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65 + V L+ LV +SDL + +IP++V + LL + +D A Sbjct: 99 MELVVALLFLSMLVIITVSDLSTMLIPDKVLLFFGIPILLLRMSVAPLDPWWTAFAGAGL 158 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 ++ + MGGGD+KL G + LS LF A++G + + + R Sbjct: 159 GFGILLLLAVASRGGMGGGDIKLYLVIGFVLGPIETVLS-LFLAALVGLVYGLPRIVKRQ 217 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 P IP+G I++G +I+Y Sbjct: 218 TGRGNP---------------IPFGPFIALGAVIAY 238 >gi|167031694|ref|YP_001666925.1| prepilin peptidase [Pseudomonas putida GB-1] gi|166858182|gb|ABY96589.1| Prepilin peptidase [Pseudomonas putida GB-1] Length = 288 Score = 39.9 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65 V + + L +CL+ +L D ++P+ + + ++ ++ AF + + G Sbjct: 129 VEALLALPLTWCLLALSLIDADHQLLPDALVLPMLWLGLIVNAFGIYAPLTDALWGAVAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KL+ W GW L+ L +++G ++ + +L Sbjct: 189 YLSLWTVYWLFKLITGKEGMGYGDFKLMALIGAWGGWQVLPLTLLL-SSVVGALVGLCLL 247 Query: 122 TVRMITNHIPIF 133 +R I Sbjct: 248 RLRRHAMGTAIP 259 >gi|91776577|ref|YP_546333.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Methylobacillus flagellatus KT] gi|91710564|gb|ABE50492.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Methylobacillus flagellatus KT] Length = 288 Score = 39.9 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 21/150 (14%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIICFCF 75 F L+ DL + ++P+ +++ +L + LL G D + G +V + Sbjct: 142 FALIALTFIDLDTHLLPDDITLPLLWAGLLFNLDHGFTDISSAVIGAAAGYLVLWSVYWL 201 Query: 76 FAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 F MG GD KLL + WFGW + + ++ G I+ + ++ + Sbjct: 202 FKLITGKEGMGYGDFKLLAALGAWFGW-QLLPAVILLSSVAGSIIGIGLIVL-------- 252 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + IP+G +++GG+ + Sbjct: 253 -------TKHGRETPIPFGPYLALGGIAAL 275 >gi|302037441|ref|YP_003797763.1| putative prepilin peptidase CpaA [Candidatus Nitrospira defluvii] gi|300605505|emb|CBK41838.1| putative Prepilin peptidase CpaA [Candidatus Nitrospira defluvii] Length = 159 Score = 39.9 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 53/154 (34%), Gaps = 13/154 (8%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 L A SDL A IPN ++ +G L ++ + LI + F+ Sbjct: 1 MLALGAASDLRCAKIPNWLTYSAMGG-GLLFHTTQEGLSGLSQSVGGLLIGIALFLAFYL 59 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM-----------I 126 MG GDVK + + G + L +LGG +V Sbjct: 60 LGGMGAGDVKFMGAVGSMVGLS-GILPAAGVTTLLGGAYAVATAIRHWGIGTGAWRILSP 118 Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + G + K+ YG+ I+ G +++ Sbjct: 119 FLAWALTGRLALAPPDTQPKLRYGVVIAAGTVVA 152 >gi|206559891|ref|YP_002230655.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia J2315] gi|198035932|emb|CAR51824.1| putative flp type pilus leader peptidase [Burkholderia cenocepacia J2315] Length = 164 Score = 39.9 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 6/139 (4%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + V AL D+ IPN + I S + A + L+ Sbjct: 1 MILLTGVGVFLAWAVLVALEDIRHRRIPNSLVIGGFVSAFVLAGHNPFGIS-VNQALIGA 59 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 L+ F+ F FF +MG DVK+ W G ++ +L+ + Sbjct: 60 LVGFLSLFPFFVLRVMGAADVKVFAVLGAWCGPYALLWLWIIAS-----LLAFAHAGTLV 114 Query: 126 ITNHIPIFGMFVPKSFLMK 144 P+ ++ +S M+ Sbjct: 115 FATRTPVSALWQRRSPTMQ 133 >gi|294140771|ref|YP_003556749.1| type IV leader peptidase family [Shewanella violacea DSS12] gi|293327240|dbj|BAJ01971.1| type IV leader peptidase family [Shewanella violacea DSS12] Length = 195 Score = 39.9 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 70/165 (42%), Gaps = 16/165 (9%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLI 67 S ++ + A + DL+ IPN++ ++ + F + A+ + E + + + Sbjct: 11 SLQLMLAGAFFIAAIVMDLYKEKIPNKLCLLAIFSGFAINAYYAQL--EGVLMAFFGFAL 68 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 FII F F F I+G GD+KL+ G ++ L + + G S+ ++ + Sbjct: 69 AFIILFPTFLFRILGAGDIKLMMGIGALMGPD-LLVASLAYGIVAGAGTSLLLIIWKTGF 127 Query: 128 NHIPIFGMFVPKSFLMKN------------KIPYGIAISMGGLIS 160 + + F +++ ++PY A+++G L + Sbjct: 128 SGLAKTLKRYWDCFYLRSYFKPEPGEAAGLRVPYAPALALGWLWA 172 >gi|237802034|ref|ZP_04590495.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024890|gb|EGI04946.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 290 Score = 39.9 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|307153098|ref|YP_003888482.1| Prepilin peptidase [Cyanothece sp. PCC 7822] gi|306983326|gb|ADN15207.1| Prepilin peptidase [Cyanothece sp. PCC 7822] Length = 270 Score = 39.9 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 12/131 (9%) Query: 19 LVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 L+ +L D+ + +PN ++ ++ + G D+ I +L+ G++ ++ F Sbjct: 114 LLALSLIDVDTMTLPNALTQSGLVLGLVFQGTRGGSDFSQIPHNLMFGIVGAVLGIWLFE 173 Query: 78 F-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 MGGGD KL W GW L+ A+ V IL +M Sbjct: 174 IIRWVGTLVFGQEAMGGGDPKLAAMIGAWLGWKYLLLTGFLACALGTAFGVVAILLTQMG 233 Query: 127 TNHIPIFGMFV 137 H FG F+ Sbjct: 234 RRHPIRFGPFL 244 >gi|330720594|gb|EGG98859.1| Leader peptidase (Prepilin peptidase) / N-methyltransferase [gamma proteobacterium IMCC2047] Length = 290 Score = 39.9 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 21/155 (13%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVF 69 + L+ + L+ + D ++P+ +++ +L + +F L + G + Sbjct: 135 LMLLLTWALITLTMIDFDHQLLPDSITLPLLWIGLIANSFGLFCSLPEALWGAVFGYLSL 194 Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + F MG GD KLL WFGW + +++G I+ +F+L ++ Sbjct: 195 WSVYWLFKLLTGKEGMGYGDFKLLAVLGAWFGW-QLLPMIILLSSLVGAIVGIFLLVLKN 253 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 +P IP+G ++ G I+ Sbjct: 254 RGKSVP---------------IPFGPYLAAAGFIT 273 >gi|121593227|ref|YP_985123.1| type 4 prepilin peptidase 1 [Acidovorax sp. JS42] gi|120605307|gb|ABM41047.1| type 4 prepilin peptidase 1 [Acidovorax sp. JS42] Length = 293 Score = 39.9 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + +A + LV A D + ++P+ +++ +L + LL A L ++ + + + Sbjct: 132 LTTAAWCGFSAALVTLACIDWDTTLLPDDITLPLLWAGLLAAVLRWIEVQPVDAVIGAAA 191 Query: 67 IVFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 + ++ F + MG GD KL + WFGW + + + +++G I+ + + Sbjct: 192 GYLSLWSVYWGFKLATGKEGMGYGDFKLFAALGAWFGW-QALVPIILLASVIGAIVGIAM 250 >gi|90407088|ref|ZP_01215277.1| type 4 prepilin peptidase [Psychromonas sp. CNPT3] gi|90311810|gb|EAS39906.1| type 4 prepilin peptidase [Psychromonas sp. CNPT3] Length = 290 Score = 39.9 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFII 71 LI + L+ + D ++P+++++ +L L+ + + ++G + Sbjct: 138 LIFTWVLICLSYIDFDVMLLPDQLTLPLLWVGLLVNLSYSFVSINDAVVGAILGYLSLWS 197 Query: 72 CFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + WFGW L + + G I+ + +L + Sbjct: 198 VYWLFKLATGKEGMGYGDFKLLAALGAWFGWQALPL-IILLSSFSGAIIGIVLLLLSKNK 256 Query: 128 NHIPIF 133 P+ Sbjct: 257 ESKPLP 262 >gi|242238921|ref|YP_002987102.1| prepilin peptidase [Dickeya dadantii Ech703] gi|242130978|gb|ACS85280.1| Prepilin peptidase [Dickeya dadantii Ech703] Length = 283 Score = 39.9 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 18 CLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L AAL D + ++P+ V++ +L L + + + + G + + + F Sbjct: 141 MLTVAALIDARTQLLPDVVTLPLLWCGLLFNLVDTFVPLDEAVIGAVAGYLSLWLVYWGF 200 Query: 77 AF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 +G GD KLL + W GW S + + ++ G +L++ ++R + P+ Sbjct: 201 RLLSGREALGYGDFKLLAALGAWLGW-QSLPNLVLIASLTGLLLTLCWRSIRRVNLQQPL 259 Query: 133 F 133 Sbjct: 260 A 260 >gi|332998906|gb|EGK18497.1| tadV [Shigella flexneri VA-6] gi|333000004|gb|EGK19587.1| tadV [Shigella flexneri K-218] Length = 90 Score = 39.9 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 + F F+ I+GGGDVKLLT ++ +FL + G ++ + L Sbjct: 1 MGFFLFSAGIIGGGDVKLLTVLSLAID-EHELANFLVAMTFCGALVVLAGLLF 52 >gi|222056163|ref|YP_002538525.1| peptidase A24A domain protein [Geobacter sp. FRC-32] gi|221565452|gb|ACM21424.1| peptidase A24A domain protein [Geobacter sp. FRC-32] Length = 263 Score = 39.9 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 I LV DL +IP+ +S+ ++ F+ + FL + ++ + +L+G Sbjct: 103 LFLFIFSSALVTITFIDLEHQIIPDIISLPGIIIGFVASFFLPWLGWKNSLIGMLLGGGS 162 Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 ++ + F MGGGD+KLL + GW S +F +++G I+ V ++ V+ Sbjct: 163 LLVVAYGYQFLTKKEGMGGGDIKLLAMMGAFLGWR-SVPFIIFVASLVGSIVGVTLMLVQ 221 Query: 125 MITNHIPIF 133 + + I Sbjct: 222 KKDSKLAIP 230 >gi|302189196|ref|ZP_07265869.1| prepilin peptidase [Pseudomonas syringae pv. syringae 642] Length = 290 Score = 39.9 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A LI + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QAAAMLILSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|321312338|ref|YP_004204625.1| membrane protease and transmethylase [Bacillus subtilis BSn5] gi|291485220|dbj|BAI86295.1| hypothetical protein BSNT_04077 [Bacillus subtilis subsp. natto BEST195] gi|320018612|gb|ADV93598.1| membrane protease and transmethylase [Bacillus subtilis BSn5] Length = 178 Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 16/149 (10%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L+ A++D+ +IPNR+ I L + +D L +F+ Sbjct: 30 VVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAV 89 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 +GGGD+KL G +F F V I + +LT R Sbjct: 90 IAAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGR-------- 141 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + +P+ AI+ G +++Y Sbjct: 142 --------LAKRQPLPFAPAIAAGSILAY 162 >gi|282165638|ref|YP_003358023.1| hypothetical protein MCP_2968 [Methanocella paludicola SANAE] gi|282157952|dbj|BAI63040.1| hypothetical protein [Methanocella paludicola SANAE] Length = 159 Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 3/94 (3%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85 D + IPNR++I ++ + L G +L ++ + + + + GGGD Sbjct: 14 DYRTMRIPNRLTIPLIAAGLALMAARGYPL---GPAVLTCIVSYAYVYGLWKLRMWGGGD 70 Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 KL+ + L F+ ++ + + Sbjct: 71 AKLVLGLFLMASPAYPPLYFIAAYSLCLAAVLLL 104 >gi|74318386|ref|YP_316126.1| type 4 prepilin peptidase 1 [Thiobacillus denitrificans ATCC 25259] gi|74057881|gb|AAZ98321.1| prepilin cysteine protease (C20) PilD [Thiobacillus denitrificans ATCC 25259] Length = 283 Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 21/162 (12%) Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLL 63 V +A L+ + L+ A DL + ++P+ +++ +L L+ Sbjct: 124 PTVQAAGALLLVWMLIALAFIDLDTTLLPDSLTLPLLWAGLLINLGGHFASLPDAVAGAA 183 Query: 64 VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 G +V + F MG GD KLL + W GW ++ L +++G ++ + Sbjct: 184 AGYLVLWSVYWMFKLVTGKEGMGYGDFKLLAAIGAWLGWQLLPVTLLL-ASVVGAVVGIT 242 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 ++ +P IP+G ++ GGL++ Sbjct: 243 MIVAVKHDRRVP---------------IPFGPYLAGGGLVAL 269 >gi|332982938|ref|YP_004464379.1| peptidase A24A prepilin type IV [Mahella australiensis 50-1 BON] gi|332700616|gb|AEE97557.1| peptidase A24A prepilin type IV [Mahella australiensis 50-1 BON] Length = 145 Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 5/87 (5%) Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF-- 78 +AA +DL I + V + + L L + VF + F FA Sbjct: 18 YAAATDLKRREIDHWVPLTVAVYGTLYQLLYAHRLPEALICTAA---VFAVLFAVFAVSN 74 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSF 105 GGGDVKLLTS A+++G + F Sbjct: 75 GGFGGGDVKLLTSLALFYGSNIFVVVF 101 >gi|109899647|ref|YP_662902.1| prepilin peptidase [Pseudoalteromonas atlantica T6c] gi|109701928|gb|ABG41848.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Pseudoalteromonas atlantica T6c] Length = 300 Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 67/167 (40%), Gaps = 23/167 (13%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 + ++ + LV D+ + ++P+++++ +L LL + + ++ + Sbjct: 141 SALAAVVLTWVLVALIFIDIDTMLLPDQLTLPLLWMGLLFSIINPDVTPTDSI-IGATTG 199 Query: 68 VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + ++AF + MG GD KLL + W GW + + +++G ++ + IL Sbjct: 200 YLSLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPI-VILMSSLVGAVIGISIL 258 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168 T+ + IP+G +++ G ++ Sbjct: 259 TI---------------QGKDKGQAIPFGPYLAIAGWLTLLYGDWIS 290 >gi|332305386|ref|YP_004433237.1| Prepilin peptidase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172715|gb|AEE21969.1| Prepilin peptidase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 298 Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 66/167 (39%), Gaps = 23/167 (13%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 + ++ + LV D+ + ++P+++++ +L LL + + ++ + + Sbjct: 140 SALAGVVMTWILVALIFIDIDTMLLPDQLTLPLLWMGLLFSIVNPAVTSADSI-IGATVG 198 Query: 68 VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + ++AF + MG GD KLL + W GW + +++G ++ + +L Sbjct: 199 YLSLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWMGW-QYLAIVVLMSSLVGAVIGISVL 257 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFK 168 + + IP+G +++ G ++ Sbjct: 258 SF---------------QGKDKGQAIPFGPYLAIAGWLTLLYGDWIS 289 >gi|312795077|ref|YP_004027999.1| Type 4 prepilin peptidase pilD [Burkholderia rhizoxinica HKI 454] gi|312166852|emb|CBW73855.1| Type 4 prepilin peptidase pilD [Burkholderia rhizoxinica HKI 454] Length = 330 Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 6/116 (5%) Query: 23 ALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--- 78 + DL + ++P+ +++ +L L+ + + + G + + F Sbjct: 191 SAIDLETKLLPDSLTLPLLWAGLLINLHAVFAPLDAAVIGAAAGYLSLWAVYWLFKLVRG 250 Query: 79 -NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 +G GD KL + WFGW+P L + ++ G I+ + + + P+ Sbjct: 251 AEGIGYGDFKLFAAIGAWFGWSP-LLQVILVASVCGAIVGLGATLAKRMRLEEPLP 305 >gi|221213142|ref|ZP_03586118.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD1] gi|221167355|gb|EED99825.1| peptidase A24A, prepilin type IV [Burkholderia multivorans CGD1] Length = 166 Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 2/127 (1%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC-FFAFNIMGG 83 SD+ +PN + + L L+AFL + + L +G+++ +I F FF +MG Sbjct: 20 SDVRVRRVPNSLVLGGLALAFLSAFLNANPFGISPLSATIGMLIGLIAFVPFFLLRVMGA 79 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 D+K+ W G + L ++ GI ++ ++ V Sbjct: 80 ADLKVFAVLGAWCG-AHALLWLWIVASLAAGIHALVLMLVSRTPIRALWPQGQPVLMLGG 138 Query: 144 KNKIPYG 150 PY Sbjct: 139 HRATPYA 145 >gi|167841422|ref|ZP_02468106.1| peptidase A24A, prepilin type IV [Burkholderia thailandensis MSMB43] Length = 179 Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 55/156 (35%), Gaps = 14/156 (8%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 V AA DL S IPNR+ + L L+ L + L + F+ Sbjct: 16 LLAVVAASIDLASRRIPNRLIALGLVGALIVQCALPGPHNGFVAWLAGAATGAGLLLPFY 75 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 M GDVKL+ + W G T + L + G + R + + Sbjct: 76 VVRGMAAGDVKLMLAIGAWVGPTLALHIALATFVVGGAWALAVVARRRRLRKLLANLRHL 135 Query: 137 VPKSFLMK--------------NKIPYGIAISMGGL 158 + L++ +PYG+AI++G L Sbjct: 136 FAGAALLRDPSAARAAPGIDSVGTLPYGVAIAIGTL 171 >gi|149909549|ref|ZP_01898203.1| hypothetical protein PE36_17125 [Moritella sp. PE36] gi|149807454|gb|EDM67405.1| hypothetical protein PE36_17125 [Moritella sp. PE36] Length = 144 Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 17/158 (10%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + + +LI F D+ S + N + +V+ L G L + Sbjct: 3 LQALGWLIIAILSCFICYQDVKSRKVRNDIVMVLATVTFFLMILTGNYAATYICLGLFLV 62 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 + + N++ GD+KLL + ++ L+F+ + GG+L+V Sbjct: 63 GLLLT-----QVNVIAAGDIKLLMAFSLAIKPDLILLTFVV-IGFTGGLLAVVY------ 110 Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164 + + K N IPY + I +++ S Sbjct: 111 -----YLSIRMNKLSKQDNGIPYALPICFSSVLAIAAS 143 >gi|189485485|ref|YP_001956426.1| A24A-like peptidase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287444|dbj|BAG13965.1| A24A-like peptidase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 218 Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 12/128 (9%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH--------L 62 +F F L+ + +D F +IP V I ++ + + +F+ E L Sbjct: 51 LFAFLTFSLISVSTTDYFHRIIPAIVPIFLIITGFIFSFMNSALGETYPSRFINSVLGIL 110 Query: 63 LVGLIVFIICFC---FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 G ++ + F + +GGGD+KL+ V+ GW + + +F A++GGI + Sbjct: 111 TGGGVLLVAGFLGQLIYKKEAIGGGDIKLMAGVGVFIGWEKALFA-VFIAAVMGGIAGLI 169 Query: 120 ILTVRMIT 127 +L + I Sbjct: 170 LLAAKKIE 177 >gi|167755496|ref|ZP_02427623.1| hypothetical protein CLORAM_01010 [Clostridium ramosum DSM 1402] gi|167704435|gb|EDS19014.1| hypothetical protein CLORAM_01010 [Clostridium ramosum DSM 1402] Length = 244 Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 1/109 (0%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L+ + D + IPN + I ++ ++ A L + + + F++ Sbjct: 97 VLAMILLTITMIDFDTMTIPNGLVIALVAPVIVCAVLEPQISISSRVIGMASVSGFMLLM 156 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + GGGD+KL+ GW + L+ + + GGI + +++ Sbjct: 157 TLAIPDCFGGGDMKLMFVCGFMLGWINTLLAGFIGL-LAGGIYASYLMV 204 >gi|262273801|ref|ZP_06051614.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Grimontia hollisae CIP 101886] gi|262222216|gb|EEY73528.1| leader peptidase (Prepilin peptidase)/N-methyltransferase [Grimontia hollisae CIP 101886] Length = 289 Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 8/118 (6%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM--LGSFLLTAFLLGMDYELIALHLLVGL 66 S + F LV DL + ++P+++++ + G L L + + + + G Sbjct: 130 SLAVIGATFVLVVLCFIDLDTLLLPDQMTLPLMWAGMLLALTGLSPVSLQDAVIGAMAGY 189 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFF--VAILGGILSV 118 + F F MG GD KLL + W GW + L V +GGI+++ Sbjct: 190 LSLWSVFQLFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMVILMASMVGAIGGIITM 247 >gi|298155837|ref|YP_003717663.1| putative transmembrane pilus biosynthesis protein [Escherichia coli ETEC 1392/75] gi|156121674|gb|ABU50050.1| LngP [Escherichia coli] gi|297374434|emb|CBL93496.1| putative transmembrane pilus biosynthesis protein [Escherichia coli ETEC 1392/75] Length = 284 Score = 39.5 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 17/170 (10%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 + + +V +V + L + DL ++P+ + +L + LL A L Sbjct: 108 LNQQPLVVISVLFLFSVLLCL-TVIDLDHLLLPDSLVFTLLWTGLLAATFEISPVHLKDA 166 Query: 61 HLLVGLIVFIICFCFFAFNIM------GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGG 114 + V + + F ++ GGGDVKL+++ + W GW + L F +++G Sbjct: 167 VIGVCGTWLFLTVITYLFTVIRNKEGLGGGDVKLISALSAWVGWY-YIPALLVFSSVIG- 224 Query: 115 ILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDS 164 +F + R + +P+G AIS+ Y S Sbjct: 225 -FILFFIAKRKMEFSSDTERTLYY-------VVPFGPAISLTAFFIYLSS 266 >gi|297544542|ref|YP_003676844.1| Prepilin peptidase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842317|gb|ADH60833.1| Prepilin peptidase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 252 Score = 39.5 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 4/112 (3%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 ++ L+ + D+ ++PN++ +V +G + + + L++G + Sbjct: 103 YMFIAAILIAESFIDIDYKIVPNKIILVGFIGGIIFRILMYNYGLIDYIVGLILGGGILF 162 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI--LGGILSVFI 120 + + MGGGD+KL+ + GW + L V I LGG++ V + Sbjct: 163 L-ISLISGGEMGGGDIKLMALIGFFIGWKLTILVLFLSVIIGALGGVILVAL 213 >gi|146296444|ref|YP_001180215.1| peptidase A24A, prepilin type IV [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410020|gb|ABP67024.1| peptidase A24A, prepilin type IV [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 152 Score = 39.5 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 3/131 (2%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M + + LV AA+ D IPN ++V+L +L Y + + + Sbjct: 4 MSKVILSVSFLLILVVAAIYDFKKREIPN-FTVVLLLFIAAVRVILNKSYSNVIIFAIYT 62 Query: 66 LIVFIICFCFFAFNI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 L F I I +G GD+KLL+ +++FG+ + FL L+ I Sbjct: 63 LFFFAIYIFAERRGIYLLGEGDIKLLSVLSLYFGFDFIKVLFLACTTGFAMGLATGIKKK 122 Query: 124 RMITNHIPIFG 134 + ++P+ Sbjct: 123 TYLKTYVPLAP 133 >gi|313497008|gb|ADR58374.1| Prepilin peptidase [Pseudomonas putida BIRD-1] Length = 283 Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 6/132 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65 V + + L +CL+ +L D ++P+ + + M ++ AF + + + G Sbjct: 124 VEALLALPLTWCLLALSLIDADHQLLPDVLVLPTMWLGLIVNAFGIHVPLADALWGAVAG 183 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KL+ W GW L+ L +++G ++ + +L Sbjct: 184 YLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLL-SSVVGALVGLCLL 242 Query: 122 TVRMITNHIPIF 133 R I Sbjct: 243 RFRRHALGTAIP 254 >gi|300694114|ref|YP_003750087.1| prepilin peptidase transmembrane protein (cpaa) [Ralstonia solanacearum PSI07] gi|299076151|emb|CBJ35464.1| prepilin peptidase transmembrane protein (cpaA) [Ralstonia solanacearum PSI07] Length = 154 Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 13/132 (9%) Query: 36 VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVW 95 + + + L D+ + L G I +A MG GDVK + Sbjct: 10 LVLSIALVGFGPVMALAYDWRDVWL---GGAIALAGFLPLYALGWMGAGDVKFFAVAGLL 66 Query: 96 FGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP---------KSFLMKNK 146 GW ++ ++L G+ ++ I+ +R + P M + + Sbjct: 67 AGW-HGLVAIWLVSSVLAGVHALAIVLLRRVDASAPSAWMLMRVCPALARWDAGHAGRRG 125 Query: 147 IPYGIAISMGGL 158 IPY +++G L Sbjct: 126 IPYAAYMALGLL 137 >gi|20091424|ref|NP_617499.1| hypothetical protein MA2598 [Methanosarcina acetivorans C2A] gi|19916565|gb|AAM05979.1| predicted protein [Methanosarcina acetivorans C2A] Length = 131 Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 ++ LV A +DL + NR +M + L + +++ ++F+ Sbjct: 3 RIILISLFLVLACYTDLRYRRVSNRSCFLMFVISVPFIVQL-----ISVRYVITVGLIFL 57 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 I F F GGGD K L ++ F + +F +++ +L + R Sbjct: 58 IIFFAFKKGCFGGGDAKSLILISLLFPDPVLIIWIMFISSVIVIVLFLLKRVGRDTQIPF 117 Query: 131 PIF 133 I Sbjct: 118 MIP 120 >gi|319938042|ref|ZP_08012442.1| hypothetical protein HMPREF9488_03278 [Coprobacillus sp. 29_1] gi|319806948|gb|EFW03587.1| hypothetical protein HMPREF9488_03278 [Coprobacillus sp. 29_1] Length = 155 Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L A +D I N +++ + +L LL + ++ L + I+C F Sbjct: 11 VLLSICAYTDTKFRKIYNWMTLPFIAIGILNTLLL-YGPKEGFMNCLWLIPALILCIILF 69 Query: 77 AFNIMGGGDVKLLTSTAVWFGWT 99 + +GGGD KL+ S G Sbjct: 70 KLHQIGGGDAKLILSVGALMGLE 92 >gi|315500688|ref|YP_004089489.1| peptidase A24A domain protein [Asticcacaulis excentricus CB 48] gi|315418700|gb|ADU15338.1| peptidase A24A domain protein [Asticcacaulis excentricus CB 48] Length = 264 Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 6/112 (5%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF---FAFNIMG 82 D+ + +PN + ++L L + + G + V +++ + F +G Sbjct: 129 DIQTFRLPNPLVFMVLVFSGLLSVVRGEGLTSLLWAAGVFIVLKALQFILQKRSGVAALG 188 Query: 83 GGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 GD+KL+++ A+W G S +++ F +A LG ++ + + R P Sbjct: 189 EGDIKLMSALALWLG---SSVAYAFTLASLGALVFIVLTRRRGRIPFGPFIA 237 >gi|120612326|ref|YP_972004.1| type 4 prepilin peptidase 1 [Acidovorax citrulli AAC00-1] gi|120590790|gb|ABM34230.1| type 4 prepilin peptidase 1 [Acidovorax citrulli AAC00-1] Length = 295 Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 22/148 (14%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 LV A D + ++P+ +++ +L LL + L A + ++AF Sbjct: 146 LVTLACIDWDTTLLPDDITLPLLWGGLLGSAFQWTSVPLFASVAGAAAGYLSLWAVYWAF 205 Query: 79 NI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 + MG GD KL + WFGW + + + +++G ++ + Sbjct: 206 KLATGKEGMGYGDFKLFAALGAWFGW-QALVPIILMASVIGALVGI-------------- 250 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLIS 160 GM + N IP+G ++ GL + Sbjct: 251 -GMKFTRGLREGNYIPFGPFLAGAGLAA 277 >gi|22298019|ref|NP_681266.1| type 4 prepilin-like proteins leader peptide processing enzyme [Thermosynechococcus elongatus BP-1] gi|22294197|dbj|BAC08028.1| type 4 prepilin-like proteins leader peptide processing enzyme [Thermosynechococcus elongatus BP-1] Length = 248 Score = 39.5 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 7/114 (6%) Query: 26 DLFSAMIPN----RVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI--ICFCFFAFN 79 DL + +P+ I L + LT L G+ +IA + + L I F Sbjct: 102 DLDTMTLPHPLTKWGLITGLLARGLTTGLGGITEGIIAAVIGIWLFDLIRWGGAIAFNQE 161 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 +MGGGD KL W GW ++F A+ GG++ F + + I PI Sbjct: 162 VMGGGDGKLAAMIGAWLGWQGLLVTFFLACAL-GGLMGGFGIALGWIQRRQPIP 214 >gi|221310747|ref|ZP_03592594.1| DNA-binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|221315072|ref|ZP_03596877.1| DNA-binding protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319991|ref|ZP_03601285.1| DNA-binding protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221324273|ref|ZP_03605567.1| DNA-binding protein [Bacillus subtilis subsp. subtilis str. SMY] Length = 178 Score = 39.5 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 16/149 (10%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L+ A++D+ +IPNR+ I L + +D L +F+ Sbjct: 30 VVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAV 89 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 +GGGD+KL G +F F V I + +LT R Sbjct: 90 IAAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGR-------- 141 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + +P+ AI+ G +++Y Sbjct: 142 --------LAKRQPLPFAPAIAAGSILAY 162 >gi|158521866|ref|YP_001529736.1| peptidase A24A domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158510692|gb|ABW67659.1| peptidase A24A domain protein [Desulfococcus oleovorans Hxd3] Length = 259 Score = 39.5 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGL 66 S V+ + L+ D+ +IP+ +S+ + FL + F++ L +L G Sbjct: 101 ESLVYFVFIASLIVVIFIDIDYQIIPDVISLPGIPIFFLASVFIVRATVTDSLLGILAGG 160 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + + MGGGD+KLL GW + +F ++ G ++ + I+ Sbjct: 161 GSLLAVAVIYRLITGKEGMGGGDIKLLAMIGALCGWQGVLFT-IFTSSLAGTVVGMVIMA 219 Query: 123 VRMITNHIPIF 133 ++ + + Sbjct: 220 MQKKNMKLALP 230 >gi|117617611|ref|YP_858310.1| prepilin peptidase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559018|gb|ABK35966.1| prepilin peptidase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 290 Score = 39.5 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIICFCFFA 77 LV DL ++P+++++ +L LL G + + + G +V + F Sbjct: 144 LVALTFIDLDKMLLPDQLTLPLLWGGLLFNLAGGFIPLADAVIGAMAGYLVLWSLYWAFK 203 Query: 78 F----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 MG GD KLL + W GW + L +++G + + ++ +R + PI Sbjct: 204 LLTGKEGMGYGDFKLLAALGAWLGWQALPI-VLLLSSLVGAFIGIGLILLRNHHQNKPIP 262 >gi|322831057|ref|YP_004211084.1| Prepilin peptidase [Rahnella sp. Y9602] gi|321166258|gb|ADW71957.1| Prepilin peptidase [Rahnella sp. Y9602] Length = 277 Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 10/116 (8%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI----- 80 DL + ++P+R+++ +L + LL L G AL+ V + F +++ + Sbjct: 142 DLATYLLPDRLTLPLLWAGLLVHSLYGSVTLQNALYGAVA-GYLALWFLYWSVKLVSGKE 200 Query: 81 -MGGGDVKLLTSTAVWFGWTPSFLSFL-FFVAILGGILSVFILTVRMITNHIPIFG 134 MG GD KLL + W GW L +L A+ G + ++ +++ ++ P Sbjct: 201 GMGYGDFKLLAALGAWVGW--QMLPYLCILAALAGIVFTLVRVSIYKMSEQTPFGP 254 >gi|293391334|ref|ZP_06635668.1| flp operon protein B [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951868|gb|EFE01987.1| flp operon protein B [Aggregatibacter actinomycetemcomitans D7S-1] Length = 108 Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 15/116 (12%) Query: 44 FLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL 103 FLL A + + + ++ L II F F+ +G GD+KL + + F Sbjct: 2 FLLFAIIPFSLLKYQTIFVMPALCTLIIGFLLFSLRFIGAGDIKLASVLMLAIPSGEVFS 61 Query: 104 SFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 F F G++ + L R + +N +PYG+AIS+G +I Sbjct: 62 FFFFTTFAGLGLIIIGWLFFRK---------------SIKENGLPYGVAISLGFMI 102 >gi|254282444|ref|ZP_04957412.1| type IV fimbrial biogenesis protein,prepilin cysteine protease (C20) PilD [gamma proteobacterium NOR51-B] gi|219678647|gb|EED34996.1| type IV fimbrial biogenesis protein,prepilin cysteine protease (C20) PilD [gamma proteobacterium NOR51-B] Length = 286 Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 6/113 (5%) Query: 26 DLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NI 80 D+ + ++P+ +++ V+ + F + E + + G ++ + F Sbjct: 145 DIDTRLLPDSITLPVLWLGLVFNLFGVFTSLEAAVMGAMAGYLILWSVYWLFKLVTGKEG 204 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 MG GD KLL + WFGW L + + +G ++ + ++ ++ IP+ Sbjct: 205 MGYGDFKLLAAFGAWFGWQSLPL-IIVLSSFVGAVIGILLVMLKRSGRDIPMP 256 >gi|71735543|ref|YP_273100.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556096|gb|AAZ35307.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 290 Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|266619396|ref|ZP_06112331.1| prepilin peptidase [Clostridium hathewayi DSM 13479] gi|288869072|gb|EFD01371.1| prepilin peptidase [Clostridium hathewayi DSM 13479] Length = 190 Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 3/120 (2%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + + + + L A +D + IP+R++ +L + + L + L Sbjct: 37 LRAVMIWLVCLILTAIAYTDFKTMHIPDRMTAALLIP-AVLSLGAESGISLFSRALGGAA 95 Query: 67 IVFIICFCFFAF-NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + F + A GGGD+KL+ + GW P + F + GG ++++L R Sbjct: 96 VSFPMFLMTLAVPGSFGGGDIKLMAVCGLILGW-PRVAAAGFLSVVTGGCYAIWLLATRR 154 >gi|228990408|ref|ZP_04150373.1| Peptidase A24A domain protein [Bacillus pseudomycoides DSM 12442] gi|228768934|gb|EEM17532.1| Peptidase A24A domain protein [Bacillus pseudomycoides DSM 12442] Length = 260 Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+ ++DLF +IP+ + F++ F+ + + + IV + F Sbjct: 127 LLIIITMTDLFYMLIPDVILFSFACLFVIEHIFISLVPWWEGLIGAGTIFIVLYLVQILF 186 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 N +GGGDVKLL+ G F+ ++ + +L R+ + FG F Sbjct: 187 -PNGLGGGDVKLLSLLGFIIGAKAIFIVLCCASSLSLCFFGIGMLLKRITSRQPLPFGPF 245 Query: 137 VP 138 + Sbjct: 246 IA 247 >gi|295706758|ref|YP_003599833.1| late competence protein ComC [Bacillus megaterium DSM 319] gi|294804417|gb|ADF41483.1| late competence protein ComC [Bacillus megaterium DSM 319] Length = 251 Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 1/131 (0%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + V L L +SD+ ++PN+V + L FLL + + +L Sbjct: 97 LELIVILTFVSFLTIIVVSDIAYMIVPNKVLLFFLPIFLLERLFIPLTSWSDSLMGGGIA 156 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 + F + +G GD+KL + G LS LF ++GG +S+ L ++ Sbjct: 157 FFLLFLVAFLSRGGLGEGDIKLYGLIGIMLGVKLVLLS-LFLAILIGGTVSIGALLMKKA 215 Query: 127 TNHIPIFGMFV 137 +PI + Sbjct: 216 KVGVPIPFVPF 226 >gi|160900922|ref|YP_001566504.1| prepilin peptidase [Delftia acidovorans SPH-1] gi|160366506|gb|ABX38119.1| Prepilin peptidase [Delftia acidovorans SPH-1] Length = 294 Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 7/117 (5%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGLI 67 A + + L+ AL D + ++P+ +++ +L + LL++ L + VG + Sbjct: 136 AAWCLFSAALLSLALIDWDTTLLPDDITLPLLWAGLLSSALHWTAVTLADAVWGAAVGYL 195 Query: 68 VFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 + + F MG GD KL + WFGW + + + +++G ++ + + Sbjct: 196 SLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGW-QALVPIILISSVIGAVVGIAL 251 >gi|330987705|gb|EGH85808.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. lachrymans str. M301315] Length = 290 Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|229817343|ref|ZP_04447625.1| hypothetical protein BIFANG_02605 [Bifidobacterium angulatum DSM 20098] gi|229785132|gb|EEP21246.1| hypothetical protein BIFANG_02605 [Bifidobacterium angulatum DSM 20098] Length = 278 Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 7/126 (5%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLLVGLIV 68 L + A DL +I N + LG + L + +H L+G +V Sbjct: 119 ALLFFAAVSIVVAFIDLDHHLILNVIIYPSLGITAVLLALASLLTGDWMRMVHALIGAVV 178 Query: 69 FIICFCFFAFNI---MGGGDVKLLTSTAVWFGWT--PSFLSFLFFVAILGGILSVFILTV 123 + A MGGGD+KL + GW P + F +GGI+S+ +L + Sbjct: 179 LGAFYLLLALVWAGGMGGGDIKLAVLIGLTLGWLGWPQLIVGAFAAFFVGGIISIVLLAL 238 Query: 124 RMITNH 129 + Sbjct: 239 HKVKLR 244 >gi|255262302|ref|ZP_05341644.1| peptidase A24A, prepilin type IV [Thalassiobium sp. R2A62] gi|255104637|gb|EET47311.1| peptidase A24A, prepilin type IV [Thalassiobium sp. R2A62] Length = 164 Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 9/157 (5%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M + + ++ + +DL I N + ++L+ FL+ + ++ Sbjct: 1 MSIPAIAAAWFLPFVAIIGIWVSYTDLKYLKIRNLAVYAIALTYLIAGFLV-LPTDVYLW 59 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTA--VWFGWTPSFLSFLFFVAILGGILSV 118 L+ ++ + AF +MG GD K L + A VW G + + + +L + Sbjct: 60 QLVHLPVMLVFGMLLNAFGLMGAGDAKFLAAAAPMVWLG------DIVVLLGVYFAVLLI 113 Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISM 155 + R+ N S+ + P G+ ++ Sbjct: 114 SWVCHRIAMNTGLRKLGPDWASWTSGKRFPMGLPLAA 150 >gi|241763809|ref|ZP_04761855.1| Prepilin peptidase [Acidovorax delafieldii 2AN] gi|241366941|gb|EER61346.1| Prepilin peptidase [Acidovorax delafieldii 2AN] Length = 289 Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 7/112 (6%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 +V A D + ++P+ +++ +L + LL + ++ L + Sbjct: 136 FSAAMVALAFIDWDTTLLPDDITLPLLWAGLLASAARWIEVPLFDSVTGAAGGYLSLWLV 195 Query: 75 FFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 ++ F + MG GD KL + WFGW + + + +++G ++ + + Sbjct: 196 YWGFKLATGKEGMGYGDFKLFAALGAWFGW-QALVPIILMSSVIGALVGIGL 246 >gi|82703250|ref|YP_412816.1| prepilin peptidase [Nitrosospira multiformis ATCC 25196] gi|82411315|gb|ABB75424.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Nitrosospira multiformis ATCC 25196] Length = 302 Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65 V + L + +V A DL + ++PN ++I +L LL G D + +VG Sbjct: 145 VIAFAALALVWAMVALAFIDLDTQLLPNDITIPLLWGGLLINLSGGFADIHSAVIGAVVG 204 Query: 66 LIVFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + MG GD KLL + W GW L + +++G + + ++ Sbjct: 205 YLALWSVYWGYKLLTGREGMGYGDFKLLAAIGAWLGWQMLPL-VILSSSLVGSMAGLGLM 263 Query: 122 TVRMITNHIPIF 133 H+PI Sbjct: 264 LAAKHGRHVPIP 275 >gi|257484000|ref|ZP_05638041.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013019|gb|EGH93075.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 290 Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|117619440|ref|YP_855989.1| leader peptidase PilD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560847|gb|ABK37795.1| leader peptidase PilD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 138 Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 21/146 (14%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 + +SDLF PN +++ L + L L LL+GL + Sbjct: 11 LMACWCLVSDLFERRTPNLAVLLLALWALWLLPFNLLSLSLALLTLLLGLFA-------Y 63 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 G GD KLL +G + + L ++A+ GG+LS+ L + Sbjct: 64 HRGWCGAGDSKLLAVCL--YGASERWPELLLWMALSGGVLSLVCLAYARL---------- 111 Query: 137 VPKSFLMKNKIPYGIAISMGGLISYP 162 + F +PYG AI ++ P Sbjct: 112 --RPFPGPVTVPYGFAILWAASLTTP 135 >gi|320326052|gb|EFW82109.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. glycinea str. B076] gi|320330217|gb|EFW86202.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. glycinea str. race 4] gi|330880436|gb|EGH14585.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. glycinea str. race 4] Length = 290 Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|167581963|ref|ZP_02374837.1| probable CpaA2 pilus assembly protein , putative [Burkholderia thailandensis TXDOH] Length = 122 Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ + L AL+DL + + ++ + + A A H +G I F Sbjct: 9 IVASWTLASLALADLRTRRLATFAIALVGALYGVQALAGAPGDGGFAPHAAIGAIAFAFG 68 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPS 101 F + GGDVKL +W G + Sbjct: 69 AAMFRIGWIAGGDVKLAAVVFLWAGPAHA 97 >gi|313200293|ref|YP_004038951.1| prepilin peptidase [Methylovorus sp. MP688] gi|312439609|gb|ADQ83715.1| Prepilin peptidase [Methylovorus sp. MP688] Length = 291 Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 21/153 (13%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIIC 72 + F L+ DL + ++P+ +++ +L LL G D G ++ Sbjct: 142 LFVFALIALTFIDLDTQLLPDDITLPLLWLGLLVNLNGGFTDLSSAVGGAAAGYLILWSI 201 Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 + F MG GD KLL + WFGW + + ++ G ++ + ++ Sbjct: 202 YWLFKLITGKEGMGYGDFKLLAAIGAWFGW-QMLPAVILLSSLAGSVIGIGLILFARHGR 260 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 P IP+G +++GG+ + Sbjct: 261 STP---------------IPFGPYLALGGIAAL 278 >gi|158320666|ref|YP_001513173.1| peptidase A24A domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158140865|gb|ABW19177.1| peptidase A24A domain protein [Alkaliphilus oremlandii OhILAs] Length = 252 Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 7/126 (5%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSI---VMLGSFLLTAFLLGMDYELIALHLLVGLI-- 67 ++ +V AL DL +IP+ + + ++ + + A++L M+ I + ++ Sbjct: 101 ILFSILMV-VALIDLKHMIIPDVLILCIFILSILYKIAAYVLWMEPFNIVQSIGGLILSG 159 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 +F + F + MG GDV L++S G FL+ +F ++G I+SVF+L ++ Sbjct: 160 LFFVLIIFLSKGGMGEGDVTLISSLGFILGIKDIFLT-IFLSFVVGAIISVFLLITKIKG 218 Query: 128 NHIPIF 133 PI Sbjct: 219 RKDPIP 224 >gi|28868144|ref|NP_790763.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato str. DC3000] gi|28851381|gb|AAO54458.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato str. DC3000] gi|331018825|gb|EGH98881.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 290 Score = 39.1 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLSDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|148545923|ref|YP_001266025.1| prepilin peptidase [Pseudomonas putida F1] gi|148509981|gb|ABQ76841.1| Prepilin peptidase [Pseudomonas putida F1] Length = 288 Score = 39.1 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 6/132 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65 V + + L +CL+ +L D ++P+ + + M ++ AF + + + G Sbjct: 129 VEALLALPLTWCLLALSLIDADHQLLPDVLVLPTMWLGLIVNAFGIHVPLADALWGAVAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KL+ W GW L+ L +++G ++ + +L Sbjct: 189 YLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLL-SSVVGALVGLCLL 247 Query: 122 TVRMITNHIPIF 133 R I Sbjct: 248 RFRRHALGTAIP 259 >gi|304415278|ref|ZP_07395973.1| type IV prepilin peptidase [Candidatus Regiella insecticola LSR1] gi|304282868|gb|EFL91336.1| type IV prepilin peptidase [Candidatus Regiella insecticola LSR1] Length = 271 Score = 39.1 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 19/122 (15%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 LI + L+ A DL ++P+ +++ +L LL ++ E + L +I + Sbjct: 124 LILAWSLIVLAFIDLDKRILPDCITLPLLWCGLL------VNVEGMFTSLSSAVIGATVG 177 Query: 73 FCFFAFNI-----------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + FF MG GD KL+ + WFGW + FL F++ GI+ L Sbjct: 178 YLFFWLTYWLIKKLTGKEGMGYGDFKLMAALGAWFGWE--IIPFLTFISSFLGIIGYISL 235 Query: 122 TV 123 + Sbjct: 236 RI 237 >gi|226310154|ref|YP_002770048.1| hypothetical protein BBR47_05670 [Brevibacillus brevis NBRC 100599] gi|226093102|dbj|BAH41544.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599] Length = 151 Score = 39.1 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 40/97 (41%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 F +V A +DL S +I + +++ + FLL L + L + L + Sbjct: 13 FVMVVAMYTDLRSRLIYDWLTLPGIVYFLLVHACLHPEKWLSYAMGAIVLGGISLLMAVI 72 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113 + MGGGD+KLL GW + + + G Sbjct: 73 SKGQMGGGDIKLLALVGAAVGWQAGLVVLMLTYLLAG 109 >gi|160893684|ref|ZP_02074468.1| hypothetical protein CLOL250_01238 [Clostridium sp. L2-50] gi|156864669|gb|EDO58100.1| hypothetical protein CLOL250_01238 [Clostridium sp. L2-50] Length = 152 Score = 39.1 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%) Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64 ++ + ++ L+ + DL +IP+R + L L L Sbjct: 6 SLLQAVQAVLFFSLLIAVSAWDLRYRIIPDRFQAGIALLSFLNFA------PGQLLGALG 59 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102 + I+ MGGGD+KL +T + G S Sbjct: 60 AVPYLIVALFCKREGGMGGGDIKLAGATGLVLGLPASL 97 >gi|163751741|ref|ZP_02158959.1| hypothetical protein KT99_12229 [Shewanella benthica KT99] gi|161328393|gb|EDP99552.1| hypothetical protein KT99_12229 [Shewanella benthica KT99] Length = 191 Score = 39.1 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 18/155 (11%) Query: 20 VFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 + A + DL+ IPN++ ++ + F + A+ + + + L + FII F F Sbjct: 18 IAAIVMDLYKEKIPNKLCLLAIFCGFAINAYYAQL--QGALMALFGFALAFIILFPTFIL 75 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV-------------RM 125 I+G GD+KL+ G P L + I+ G + +L + R Sbjct: 76 RILGAGDIKLMMGIGALMG--PQLLVWSLAYGIVAGAGTSLLLIIWKTGFTGMAMTLKRY 133 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 ++PY A+++G L + Sbjct: 134 WDCFYLRCYFKPEAGEAAGLRVPYAPALALGWLWA 168 >gi|301063974|ref|ZP_07204439.1| putative type IV prepilin leader peptidase [delta proteobacterium NaphS2] gi|300441885|gb|EFK06185.1| putative type IV prepilin leader peptidase [delta proteobacterium NaphS2] Length = 258 Score = 39.1 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 6/121 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65 + +F++ L+ D ++P+ +++ +L +L++ F G+ + + L G Sbjct: 100 LQYLLFMLFSGTLLILGFIDFDHKILPDVLTLPGILAGWLVSFFPGGISWVDSLIGLAAG 159 Query: 66 LIVFIICFCFF----AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + +GGGD+KLL W GW L + ++ G ++ + Sbjct: 160 GGSLYLVAAVYERITGREGLGGGDIKLLAMIGAWLGWMSLPL-IVLMSSLSGAVIGSAFI 218 Query: 122 T 122 Sbjct: 219 L 219 >gi|229004160|ref|ZP_04161961.1| Peptidase A24A domain protein [Bacillus mycoides Rock1-4] gi|228757021|gb|EEM06265.1| Peptidase A24A domain protein [Bacillus mycoides Rock1-4] Length = 260 Score = 39.1 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+ ++DLF +IP+ + F++ F+ + + + IV + F Sbjct: 127 LLIIITMTDLFYMLIPDVILFSFACLFVIEHIFISLVPWWEGLIGGGTIFIVLYLVQILF 186 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 N +GGGDVKLL+ G F+ ++ + +L R+ + FG F Sbjct: 187 -PNGLGGGDVKLLSLLGFIIGAKAIFIVLCCASSLSLCFFGIGMLLKRITSRQPLPFGPF 245 Query: 137 VP 138 + Sbjct: 246 IA 247 >gi|213970188|ref|ZP_03398319.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato T1] gi|301385924|ref|ZP_07234342.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato Max13] gi|302063131|ref|ZP_07254672.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato K40] gi|302134157|ref|ZP_07260147.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925069|gb|EEB58633.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato T1] Length = 290 Score = 39.1 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLSDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|145588372|ref|YP_001154969.1| peptidase A24A, prepilin type IV [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046778|gb|ABP33405.1| peptidase A24A, prepilin type IV [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 166 Score = 39.1 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 8/127 (6%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYELIALHLLVGLIVFI 70 + L++ A D + + +RV++ +L L+ + + ++G F Sbjct: 13 LFILALIYLAYQDARTFRLSDRVTLPLLVLGLVFNSFDSTRLVSFPDALTGAILGYSFFW 72 Query: 71 ICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 + + N +G GD KLL + W G+ + + A+ G + L V+ Sbjct: 73 LMNFLYRLIKKQNGIGMGDAKLLAALGAWLGFN-ALPDVILIAALSGTLGGFIWLKVQDQ 131 Query: 127 TNHIPIF 133 + P Sbjct: 132 RHRAPFP 138 >gi|292670460|ref|ZP_06603886.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292647870|gb|EFF65842.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 188 Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 1/125 (0%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 I L++ + DL M+ + +++ L+ + + G+ A+ V C Sbjct: 44 IFAAALLWLSFLDLRDGMLYDCITLPFAALGLVFS-MAGVGSVTDAMIGGTLCGVLFYCL 102 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 A +GGGDVKL +W GW + ++ + G +V ++T R + F Sbjct: 103 YIAARGGLGGGDVKLAAGLGLWLGWEAAVIALWIAFMLGGTAAAVLLITGRRKRHDGIPF 162 Query: 134 GMFVP 138 G F+ Sbjct: 163 GPFLA 167 >gi|95928764|ref|ZP_01311510.1| Prepilin peptidase [Desulfuromonas acetoxidans DSM 684] gi|95135109|gb|EAT16762.1| Prepilin peptidase [Desulfuromonas acetoxidans DSM 684] Length = 264 Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 6/132 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65 + + V + LV D +IP+ +++ + F+ + + + ++ + +LVG Sbjct: 105 MVTLVLFLFVSALVVVTFIDYDHQIIPDVITLPGIPIGFICSFAIPWVSWKDSLIGVLVG 164 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + F MGGGD+KLL + GW L +F ++LG ++ + ++ Sbjct: 165 GGSLFAVAFLYEFFTKKEGMGGGDIKLLAMIGAFCGWR-VILPVVFLSSLLGSLVGIPVM 223 Query: 122 TVRMITNHIPIF 133 ++ + + + Sbjct: 224 LLQKGDSKMALP 235 >gi|330966321|gb|EGH66581.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 290 Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLMGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|289626921|ref|ZP_06459875.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330867359|gb|EGH02068.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 290 Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QTAAMLVLSWGLLTMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|229132199|ref|ZP_04261056.1| Peptidase A24A domain protein [Bacillus cereus BDRD-ST196] gi|228651247|gb|EEL07225.1| Peptidase A24A domain protein [Bacillus cereus BDRD-ST196] Length = 249 Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++DL +IPNR+ I +L + + ++ + + + C +GG Sbjct: 122 VTDLVYMLIPNRILIWFALLLILECIFVPLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KLL+ G F+ I+ RM M Sbjct: 182 GDIKLLSLLGFIVGLKGIFMILFLASCFSLCFFGAGIVLKRM----------------KM 225 Query: 144 KNKIPYGIAISMGGL 158 +++IP+G IS+G + Sbjct: 226 RSQIPFGPFISLGAI 240 >gi|228996509|ref|ZP_04156148.1| Peptidase A24A domain protein [Bacillus mycoides Rock3-17] gi|228763141|gb|EEM12049.1| Peptidase A24A domain protein [Bacillus mycoides Rock3-17] Length = 260 Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+ ++DLF +IP+ + F++ F+ + + + IV + F Sbjct: 127 LLIIITMTDLFYMLIPDVILFSFACLFVIEHIFISLVPWWEGLIGGGTIFIVLYLVQILF 186 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 N +GGGDVKLL+ G F+ ++ + +L R+ + FG F Sbjct: 187 -PNGLGGGDVKLLSLLGFIIGAKAIFIVLCCASSLSLCFFGIGMLLKRITSRQPLPFGPF 245 Query: 137 VP 138 + Sbjct: 246 IA 247 >gi|153956474|ref|YP_001397239.1| hypothetical protein CKL_3891 [Clostridium kluyveri DSM 555] gi|219856778|ref|YP_002473900.1| hypothetical protein CKR_3435 [Clostridium kluyveri NBRC 12016] gi|146349332|gb|EDK35868.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219570502|dbj|BAH08486.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 139 Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 L A+++DL ++PN + V+ + + LIAL L+ + F Sbjct: 13 FIALLCAASVTDLTKRIVPNWICAVIAVLSIPGFAPEKLPGILIALPFLLAAVFF----- 67 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 MGGGD+KL+ + + G L A+ G +L + + + I Sbjct: 68 ----GGMGGGDIKLMAACGLVLGLPKGLL-----AAMAGLVLLLIYVVIYRIVCR 113 >gi|330977426|gb|EGH77373.1| prepilin peptidase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 290 Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QAAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFSSLNNALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|293115690|ref|ZP_06604570.1| type IV prepilin peptidase [Butyrivibrio crossotus DSM 2876] gi|292808812|gb|EFF68017.1| type IV prepilin peptidase [Butyrivibrio crossotus DSM 2876] Length = 209 Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 51/115 (44%), Gaps = 1/115 (0%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 V S + + L+ ++ D + IP ++I +L ++ ++ + ++ Sbjct: 58 VTSICYALSVSMLIALSVIDWRTYEIPFGLNIAILVFGIINMAFNYKNFLYYLIGMVCVS 117 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 ++ + +GGGD+KL+ + + GW L+ + I+G ++ + ++ Sbjct: 118 GFLLLLYLITKGRGIGGGDIKLMAAAGLLLGWKHIILALILGC-IIGSVIHIILM 171 >gi|239908140|ref|YP_002954881.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] gi|239798006|dbj|BAH76995.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] Length = 165 Score = 38.7 bits (89), Expect = 0.30, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 4/110 (3%) Query: 29 SAMIPNRVSIVMLGSFL-LTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVK 87 + IPNR++ L + A+ G+ + LL +I +AF ++G GDVK Sbjct: 28 TRRIPNRITFPAAVLILGIQAWFYGLS--GLGDSLLGLAGALLIFLIPYAFRVLGAGDVK 85 Query: 88 LLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 LL G + + +S F ++ GG+ L +++ G + Sbjct: 86 LLAVVGAGLGPS-ALVSLALFTSLAGGVQIALWLAAMRLSHGRIQPGKRL 134 >gi|257453561|ref|ZP_05618851.1| type IV pilus prepilin peptidase PilD [Enhydrobacter aerosaccus SK60] gi|257449019|gb|EEV23972.1| type IV pilus prepilin peptidase PilD [Enhydrobacter aerosaccus SK60] Length = 291 Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGL 66 + L+ + LV D + ++P+R+++ + G + AF L + + G Sbjct: 136 QALAGLVLTWTLVALTGIDFDTQLLPDRLTLPLAGLGLFVNAFGLFVSPTAAIFGYVFGF 195 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + I + F + MG GD KLL + W G P L + ++ G + IL Sbjct: 196 LCLWIVYQLFLLITGKHGMGHGDFKLLAALGAWLG--PLMLPLIVLLSAFVGSVVGVILM 253 Query: 123 VRMITNHIPIFG 134 R + FG Sbjct: 254 KRSGESKPFAFG 265 >gi|294139026|ref|YP_003555004.1| type 4 prepilin-like proteins leader peptide processing enzyme [Shewanella violacea DSS12] gi|293325495|dbj|BAJ00226.1| type 4 prepilin-like proteins leader peptide processing enzyme [Shewanella violacea DSS12] Length = 305 Score = 38.7 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 23/162 (14%) Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV 64 + A + F L+ DL ++P+++++ +L L+ AL + Sbjct: 144 PTLEFAFATVLTFVLIALTGIDLDEMLLPDQLTLPLLWLGLIINLDSTFASPSDAL-IGA 202 Query: 65 GLIVFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 + F+AF + MG GD KLL WFGW + +I+G ++ + Sbjct: 203 AAGYLSLWSVFWAFKLLTGKDGMGYGDFKLLAVFGAWFGW-QLLPQIILLSSIVGAVVGI 261 Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 ++ + K N IP+G I++ G I+ Sbjct: 262 MLI---------------ISKRLNKGNPIPFGPYIALAGWIA 288 >gi|270262336|ref|ZP_06190608.1| Type 4 prepilin-like proteins leader peptide-processing enzyme [Serratia odorifera 4Rx13] gi|270044212|gb|EFA17304.1| Type 4 prepilin-like proteins leader peptide-processing enzyme [Serratia odorifera 4Rx13] Length = 235 Score = 38.7 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 8/135 (5%) Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLL 63 ++ V L L+ A D ++P+R+++ +L L+ + Sbjct: 65 PLLHRVVLLPVAAVLIALAFIDWRHRLLPDRLTLPLLWAGLLVNQQGYFTSLAEAVSGAV 124 Query: 64 VGLIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 VG + + + +G GD KLL + W GW L L A G+ +V Sbjct: 125 VGYLSLWLLNAAYRRRHQRDGIGQGDFKLLAALGAWVGWP--ALPMLVTGAAATGLCAVA 182 Query: 120 IL-TVRMITNHIPIF 133 I +R P+ Sbjct: 183 IACLMRKPGWQTPLP 197 >gi|104779908|ref|YP_606406.1| prepilin peptidase; typeII/IV secretion [Pseudomonas entomophila L48] gi|95108895|emb|CAK13591.1| putative prepilin peptidase; typeII/IV secretion [Pseudomonas entomophila L48] Length = 156 Score = 38.7 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 7/121 (5%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELIALHLLVGLIVFI 70 ++ L D+ I N +++ + G L F G + + IV + Sbjct: 4 IVLLMWLALCTEQDVRERQISNTLTLGVAGCALAWLFATGHSWIGADASEAGWALAIVML 63 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + + G GDVKL+ + A+ ++ I GI + + R + Sbjct: 64 LTLPGYMLGRFGAGDVKLMGALALATSPQ-----YVLGTFIGAGITVLAWMFGRRRLWTL 118 Query: 131 P 131 Sbjct: 119 L 119 >gi|311695302|gb|ADP98175.1| type IV pilus prepilin peptidase PilD [marine bacterium HP15] Length = 291 Score = 38.7 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 58/143 (40%), Gaps = 21/143 (14%) Query: 24 LSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF---- 78 + D + ++P+ +++ ++ +L F + D+ +VG + + F Sbjct: 149 VIDFDTQLLPDSITLPLMWLGLVLNYFGVLTDFNSAFWGAVVGYLALWSVYWLFKLVTGK 208 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 MG GD KLL + W GW + + +++G ++ + ++ + +P Sbjct: 209 EGMGHGDFKLLAALGAWLGW-QLLPAVILLSSVVGAVVGIGLMVFKQHGREVP------- 260 Query: 139 KSFLMKNKIPYGIAISMGGLISY 161 IP+G ++ GL+ Sbjct: 261 --------IPFGPYLATAGLLCL 275 >gi|289650991|ref|ZP_06482334.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. aesculi str. 2250] Length = 290 Score = 38.7 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QTAAMLVLSWGLLTMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|288930466|ref|YP_003434526.1| peptidase A24B, FlaK domain protein [Ferroglobus placidus DSM 10642] gi|288892714|gb|ADC64251.1| Peptidase A24B, FlaK domain protein [Ferroglobus placidus DSM 10642] Length = 235 Score = 38.7 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 7/148 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 ++ A FLI + A+ DL ++PN+ VML + + + Y + Sbjct: 5 IYVAKFLICLAIFLKASQLDLKERIVPNKYWKVMLLAVTPFNLVEFLSYSTFDFVFAIVQ 64 Query: 67 IVFI--ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 I F + + + GG D K L + + F P F I G + L Sbjct: 65 IAFASSLAYLLYRIGAYGGADAKALMALSYAFPRYPEVGIFPLL--IKGFSFAFSTLANA 122 Query: 125 MITNHIPIFGMFVPKSF---LMKNKIPY 149 +I MF+ + K +IPY Sbjct: 123 VIAAPFLAIYMFLSNLIKGNVSKGEIPY 150 >gi|313633116|gb|EFS00012.1| type IV leader peptidase family protein [Listeria seeligeri FSL N1-067] Length = 236 Score = 38.7 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L F ++D+ IPN + I+ + L L + + + V +I +++ F F Sbjct: 107 LAFFFITDILYMYIPNSIIILFTITLLFVYCLFDQPIVNLIISVGVSMIFYMLFFLIFRK 166 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFL 106 +G GD+KL + + G+ + F Sbjct: 167 G-IGLGDIKLFIILSSFLGFKTGYYIFF 193 >gi|126176111|ref|YP_001052260.1| prepilin peptidase [Shewanella baltica OS155] gi|125999316|gb|ABN63391.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Shewanella baltica OS155] Length = 304 Score = 38.7 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 21/153 (13%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 I F LV DL ++P+++++ +L ++ + G + Sbjct: 154 ILTFVLVALTAIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIMGAAAGYLSLWSI 213 Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 F F MG GD KLL W GW L + +++G ++ + ++ Sbjct: 214 FWLFKILTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGAVVGITMI------- 265 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 V K N IP+G I+ G I+ Sbjct: 266 --------VSKRLKQGNPIPFGPYIAAAGWIAL 290 >gi|302875179|ref|YP_003843812.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B] gi|307688856|ref|ZP_07631302.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B] gi|302578036|gb|ADL52048.1| peptidase A24A prepilin type IV [Clostridium cellulovorans 743B] Length = 159 Score = 38.7 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L++ +LSD+ +IP++V I++L L+ ++ + L L + I FII Sbjct: 28 LYAVILLYVSLSDIKIRIIPDKVHIMILLVSLIN-----INLKDSLLGLFLVSIPFIIT- 81 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110 + N +GGGD+KL+ ++ G FL+ + +A Sbjct: 82 ALISENGIGGGDIKLMGASGFLLGVKGGFLASIIGLA 118 >gi|313637693|gb|EFS03069.1| type IV leader peptidase family protein [Listeria seeligeri FSL S4-171] Length = 236 Score = 38.7 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L F ++D+ IPN + I+ + L L + + + V +I +++ F F Sbjct: 107 LAFFFITDILYMYIPNSIIILFTITLLFVYCLFDQPIVNLIISVGVSMIFYMLFFLIFRK 166 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFL 106 +G GD+KL + + G+ + F Sbjct: 167 G-IGLGDIKLFIILSSFLGFKTGYYIFF 193 >gi|325294958|ref|YP_004281472.1| Prepilin peptidase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065406|gb|ADY73413.1| Prepilin peptidase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 251 Score = 38.7 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 26 DLFSAMIPNRVS---IVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII--CFCFFAFNI 80 DL + ++P ++ ++ F + + + ++ G+I+FII + Sbjct: 114 DLKTMLVPVKLCYFAMIAGILFSIFVPSISLKDSILGASFGAGIILFIIETYYILKGKEG 173 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 MG GD ++ + GW L+ +F +++G + + + +R + + + + Sbjct: 174 MGYGDANVMAVIGAFLGWEKVLLT-IFLASLIGAVWGIIFMILRGKNSQLALPFVPF 229 >gi|227819324|ref|YP_002823295.1| CpaA pilus assembly protein [Sinorhizobium fredii NGR234] gi|227338323|gb|ACP22542.1| CpaA pilus assembly protein [Sinorhizobium fredii NGR234] Length = 185 Score = 38.7 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 24/173 (13%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL---- 63 + + + L++AA SD IPN V + ++ + L A L + E L Sbjct: 5 INILIVATVLLLLYAAWSDFRLWKIPNSVVLALMAVYALGAALKLLTAEQAGGALGELMA 64 Query: 64 ------------------VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105 GL++F + F ++F + G GD KL V+ GW Sbjct: 65 DDLGAALFSAHGLAGDVGAGLLLFALGFGLWSFRLFGAGDAKLFLPIGVFIGWNGMLPFA 124 Query: 106 LFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 +F ++GGI ++ IL + M + K+PYG+ + L Sbjct: 125 VFL--LIGGIAALLILKLPMPLQLAHFSVAMRLEEIRATRKVPYGVIMVAATL 175 >gi|260462615|ref|ZP_05810821.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum WSM2075] gi|259031521|gb|EEW32791.1| peptidase A24A prepilin type IV [Mesorhizobium opportunistum WSM2075] Length = 174 Score = 38.7 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 9/155 (5%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVML---GSFLLTAFLLGMDYELIALHLLVGL 66 + ++ L A D + I NR +++L LL L + + L + L Sbjct: 8 LLNVLAIPLLARIAWLDFKTQKITNRDVLLLLCLGAGRLLLLSLQSGSWWDMGLSAIAAL 67 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 ++ + F F+ +G GDVKL+ + L ++L + ++ +TV Sbjct: 68 LLLVAFFPFWVLRKVGAGDVKLMAVMPFLTSGSG-----LVLFSMLLLVFALITVTVVKA 122 Query: 127 TNHIPIFGMFVPKSFLMKNK-IPYGIAISMGGLIS 160 +P + + + +P+G+ IS+ + + Sbjct: 123 PFMLPEGAFRLYIQHMDRKGVVPFGVPISVAAICT 157 >gi|116052329|ref|YP_792640.1| hypothetical protein PA14_55800 [Pseudomonas aeruginosa UCBPP-PA14] gi|218893387|ref|YP_002442256.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa LESB58] gi|254239035|ref|ZP_04932358.1| hypothetical protein PACG_05212 [Pseudomonas aeruginosa C3719] gi|254244894|ref|ZP_04938216.1| hypothetical protein PA2G_05767 [Pseudomonas aeruginosa 2192] gi|296390994|ref|ZP_06880469.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa PAb1] gi|115587550|gb|ABJ13565.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126170966|gb|EAZ56477.1| hypothetical protein PACG_05212 [Pseudomonas aeruginosa C3719] gi|126198272|gb|EAZ62335.1| hypothetical protein PA2G_05767 [Pseudomonas aeruginosa 2192] gi|218773615|emb|CAW29429.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa LESB58] Length = 160 Score = 38.7 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 45/149 (30%), Gaps = 2/149 (1%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L D+ + N + + + ++ +++ + + +C Sbjct: 4 LALALWASVCGYQDIKRLRVSNWLILGGFLISFVYLYVKESSLTGATVNMAMTALFIGVC 63 Query: 73 FCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + +G DVK L + + S F + + + L R + Sbjct: 64 LSLPGYLLGRLGAADVKYLAALGLASDPLTVLYSLAFGCLLCIALFILVKLFKRSVEKSA 123 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 + + ++ P+ A+S G L Sbjct: 124 MNEEVRLRRAPSKNKSFPFIFAMSAGLLA 152 >gi|326792827|ref|YP_004310648.1| peptidase A24A prepilin type IV [Clostridium lentocellum DSM 5427] gi|326543591|gb|ADZ85450.1| peptidase A24A prepilin type IV [Clostridium lentocellum DSM 5427] Length = 138 Score = 38.7 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 7/130 (5%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVS-IVMLGSFLLTAFLLGMDYELIALHLLV 64 M+ + LI L++ + +D IPN+ ++++ F F + + I L Sbjct: 1 MIKYIILLIF---LLYFSYTDYCYRRIPNKAIFLLLIIGFCFLPFSHPISHYCIGLFFPS 57 Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 ++ F+ +G GD+KLL T ++ G+ + L F+ + +V+ + Sbjct: 58 FILFFL---NVLYSKFIGLGDIKLLICTGLFLGFKINTLLFVLTCTLGLIFCAVYTFFSK 114 Query: 125 MITNHIPIFG 134 +P+ Sbjct: 115 KRLYSLPLAP 124 >gi|92114298|ref|YP_574226.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Chromohalobacter salexigens DSM 3043] gi|91797388|gb|ABE59527.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Chromohalobacter salexigens DSM 3043] Length = 280 Score = 38.7 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 10/122 (8%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+ A+ DL + ++P+ +++ +L + L+ + + A+ + + + F ++ Sbjct: 135 LTLLVVAVIDLRTQLLPDIITLPLLWAGLIYQLVFQPYWLSNAVIGALAGYLLLWGF-YW 193 Query: 77 AFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFV---AILGGILSVFILTVRMIT 127 F MG GD KLL + WFGWT + + A++GG+L + +R + Sbjct: 194 LFKWITGKEGMGYGDFKLLAALGAWFGWTMLPILLILSAGLGAVIGGLLQLTHPRLRGMP 253 Query: 128 NH 129 Sbjct: 254 LP 255 >gi|258515688|ref|YP_003191910.1| peptidase A24A prepilin type IV [Desulfotomaculum acetoxidans DSM 771] gi|257779393|gb|ACV63287.1| peptidase A24A prepilin type IV [Desulfotomaculum acetoxidans DSM 771] Length = 177 Score = 38.7 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 L + +DL +I N VS ++ + L+ G Y L ++ G ++F++ + Sbjct: 18 ALAIGSYTDLKYRIIKNNVSFGLIVAGLVYNIFFGYGYIFSLLGIVSGFVLFLLPYII-- 75 Query: 78 FNIMGGGDVKLLTSTAVWFGWT 99 MG GDVKL+ GW Sbjct: 76 -TGMGAGDVKLIMGVGAVLGWQ 96 >gi|218288168|ref|ZP_03492467.1| peptidase A24A domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218241527|gb|EED08700.1| peptidase A24A domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 261 Score = 38.3 bits (88), Expect = 0.36, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 1/123 (0%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 AV+ L A DL S ++PN +++ F L + L G+ L+A V Sbjct: 108 AVWWAFWLYLASAVACDLTSLILPNVLTLPAGVIFFLGSGLTGIRTWLMAAAGAAVGYVI 167 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 + F MG GD KL G ++F+ AI G I ++ + + Sbjct: 168 VAAIHFVTGGKMGMGDAKLNLGIGAMLGPGYMVMAFVL-AAIYGVIAALPLRIAGRVKPQ 226 Query: 130 IPI 132 PI Sbjct: 227 QPI 229 >gi|159028570|emb|CAO87378.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 269 Score = 38.3 bits (88), Expect = 0.37, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 44/146 (30%), Gaps = 27/146 (18%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF------- 78 D + +PN ++ L ++ LLG ++L + ++ F Sbjct: 121 DFDTMTLPNSLTQSGLVLGIVFQTLLGWQNNQSVVYLFSAIASAVLGVWLFDLIRWGGSF 180 Query: 79 ----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 MGGGD KL W GW ++ Sbjct: 181 ALGQQAMGGGDAKLAAMIGAWLGWQALLVTAFLAC----------------AIGAGIGIM 224 Query: 135 MFVPKSFLMKNKIPYGIAISMGGLIS 160 K IP+G +++G L+S Sbjct: 225 GIFLGKMGKKQAIPFGPFLALGALMS 250 >gi|330890705|gb|EGH23366.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. mori str. 301020] Length = 290 Score = 38.3 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QTAAMLVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + +PI Sbjct: 250 VRRVESSMPIP 260 >gi|309778075|ref|ZP_07673014.1| type IV prepilin peptidase [Erysipelotrichaceae bacterium 3_1_53] gi|308914169|gb|EFP59970.1| type IV prepilin peptidase [Erysipelotrichaceae bacterium 3_1_53] Length = 255 Score = 38.3 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 9/115 (7%) Query: 13 LIPPFCLVFAALS--DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 ++ ++ ++ D + IPN + I +L + + E+ + +G + Sbjct: 105 VVFAIFMILLTITMIDFDTMTIPNGLIIALL---VPVGMFTALHTEMGIVTRCIGFFIVS 161 Query: 71 ICFCFFAF---NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + + GGGD+KL+ GW + L+F V I+GG ++ +L Sbjct: 162 LPMYLLTVLIPDCFGGGDIKLIAVAGFLLGWKLTLLAFFISV-IIGGCYAICLLL 215 >gi|13475424|ref|NP_106988.1| type IV prepilin peptidase [Mesorhizobium loti MAFF303099] gi|14026176|dbj|BAB52774.1| type IV prepilin peptidase [Mesorhizobium loti MAFF303099] Length = 176 Score = 38.3 bits (88), Expect = 0.38, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 9/145 (6%) Query: 18 CLVFAALSDLFSAMIPNR---VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 L A D + I NR + + + LL L + + L + L++F+ F Sbjct: 16 LLARIAWLDFTTQKIANRDALLLLCLGAGSLLLLSLQSGSWWDMGLSAIAALVLFVGLFP 75 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 F+ +G GDVKL+ G L +IL + ++ V +P Sbjct: 76 FWVLRKVGAGDVKLMAVVPFLVGGND-----LVGFSILLLLFALATAVVVKNPFLLPQGA 130 Query: 135 MFVPKSFLMKNK-IPYGIAISMGGL 158 V L + +P+G+ IS+ + Sbjct: 131 FRVYVQHLDRKGVVPFGVPISVASI 155 >gi|330973677|gb|EGH73743.1| prepilin peptidase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 290 Score = 38.3 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QAAAMLVLGWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|303241417|ref|ZP_07327920.1| peptidase A24A prepilin type IV [Acetivibrio cellulolyticus CD2] gi|302591026|gb|EFL60771.1| peptidase A24A prepilin type IV [Acetivibrio cellulolyticus CD2] Length = 151 Score = 38.3 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 6/101 (5%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL-IVFIIC 72 + L+FAAL DL IP+ + +++L + FL + + + GL V Sbjct: 10 LFVVLLIFAALWDLRKREIPDTIVVLILST----GFLAIQPWNAVVGFITTGLPYVLAAV 65 Query: 73 FCFFAFNI-MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112 F MGGGD+KL+ + G T L + + + Sbjct: 66 FIKKDSGFSMGGGDIKLMAACGFVLGITFGTLHSIISLTMA 106 >gi|153854853|ref|ZP_01996076.1| hypothetical protein DORLON_02082 [Dorea longicatena DSM 13814] gi|149752555|gb|EDM62486.1| hypothetical protein DORLON_02082 [Dorea longicatena DSM 13814] Length = 178 Score = 38.3 bits (88), Expect = 0.39, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 36/114 (31%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + L L AL+D + IP R I +L L G + + Sbjct: 26 LNGIRLLCYLGILCRVALTDHSTRKIPGRYHIYILLIAAADMVLTGNSDLYNRIPGAAAV 85 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 ++ GGGD+K + + G S + + GG + + Sbjct: 86 AGPMLVLSILIPGAFGGGDIKFMAVSGFLLGKEKIICSMACAIMLAGGYCLIML 139 >gi|15599491|ref|NP_252985.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa PAO1] gi|9950516|gb|AAG07683.1|AE004845_9 Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa PAO1] Length = 160 Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 44/149 (29%), Gaps = 2/149 (1%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L D+ + N + + + ++ +++ + + +C Sbjct: 4 LALALWASVCGYQDIKRLRVSNWLILGGFLISFVYLYVKESSLTGATVNMAMTALFIGVC 63 Query: 73 FCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + +G DVK L + + S F + + + L R + Sbjct: 64 LSLPGYLLGRLGAADVKYLAALGLASDPLTVLYSLAFGCLLCIALFILVKLFKRSVEKSA 123 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 + + ++ P+ A+ G L Sbjct: 124 MNEEVRLRRAPSKNKSFPFIFAMGAGLLA 152 >gi|289434830|ref|YP_003464702.1| leader peptidase (prepilin peptidase) / N-methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171074|emb|CBH27616.1| leader peptidase (prepilin peptidase) / N-methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 236 Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L F ++D+ IPN + I+ + L L + + + V +I +++ F F Sbjct: 107 LAFFFITDILYMYIPNSIIILFTITLLFVYCLFDQPIVNLIISVSVSMIFYMLFFLIFRK 166 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFL 106 +G GD+KL + + G+ + F Sbjct: 167 G-IGLGDIKLFIILSSFLGFKTGYYIFF 193 >gi|56477899|ref|YP_159488.1| type IV fimbrial biogenesis protein, prepilin cysteine protease (C20) PilD [Aromatoleum aromaticum EbN1] gi|56313942|emb|CAI08587.1| type IV fimbrial biogenesis protein,prepilin cysteine protease (C20) PilD [Aromatoleum aromaticum EbN1] Length = 283 Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 64/160 (40%), Gaps = 21/160 (13%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVG 65 + +A ++ + +V A DL + ++P+ +++ +L LL + + G Sbjct: 126 LAAAGAMLFLWTMVALAFIDLDTQLLPDSLTLPLLWLGLLFNLDGTYSELPQAVVGAIAG 185 Query: 66 LIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW L+ + F +++G + + ++ Sbjct: 186 YLALWAVYWLFKLATGKEGMGYGDFKLLAAIGAWLGWQMLPLT-ILFSSLVGAVTGLGLI 244 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 +P IP+G ++ G+++ Sbjct: 245 VFARHGRDVP---------------IPFGPYLAAAGVLAL 269 >gi|323525743|ref|YP_004227896.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001] gi|323382745|gb|ADX54836.1| peptidase A24A prepilin type IV [Burkholderia sp. CCGE1001] Length = 160 Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 2/132 (1%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFIICFCFFAF 78 A+SD S I N + I L + L A L +G A + + FFAF Sbjct: 5 ACVAISDYRSRRISNALVITGLIAAFLCALLDMGPFGVSAAQAAAGAAVGLVALLPFFAF 64 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 +MG DVK+ W G + + +++ G+ ++ +L + Sbjct: 65 GVMGAADVKVFAVLGAWCGM-HALIGLWAVASVVAGLHALCVLVATRTRVGALLARRAPT 123 Query: 139 KSFLMKNKIPYG 150 + P+ Sbjct: 124 FELAGRRATPFA 135 >gi|311107635|ref|YP_003980488.1| type IV leader peptidase family protein 1 [Achromobacter xylosoxidans A8] gi|310762324|gb|ADP17773.1| type IV leader peptidase family protein 1 [Achromobacter xylosoxidans A8] Length = 173 Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 19/155 (12%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-------DYELIALHLLVG 65 L+ +V +DL +PNR+ + L LL + L L G Sbjct: 10 LLFACWIVALIHADLRYRRVPNRLIVAGLAGQLLWLLAALLAPGWAYPPRWSGWLMALAG 69 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +V ++ + +MG GD+K + + G+ P ++ L ++L G+ + L V Sbjct: 70 FLVAVLFLPLWRRRLMGAGDIKAIAVLGLLLGFAPLMVT-LALASVLAGLHGLGYLAVSR 128 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 V +IPY + + + Sbjct: 129 -----------VWALSNRARQIPYAAYLGLAAFSA 152 >gi|221068972|ref|ZP_03545077.1| Prepilin peptidase [Comamonas testosteroni KF-1] gi|220713995|gb|EED69363.1| Prepilin peptidase [Comamonas testosteroni KF-1] Length = 289 Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 22/166 (13%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGLIVFIIC 72 L+ AL D + +P+ +++ +L + L+ + L + + + G + + Sbjct: 140 FSAALLTLALIDWDTTFLPDSITVPLLWAGLIASALQWTNVPLQQSLWGAVAGYMSLWLI 199 Query: 73 FCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 F F MG GD KL + WFGW + + + +++G ++ + + Sbjct: 200 FWAFKLATGKEGMGYGDFKLFAALGAWFGW-QALVPIILMASVVGAVIGIML-------- 250 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174 + +P+G ++ GG +S + GL Sbjct: 251 -------KINSQLREGGYVPFGPFLAGGGFVSLIWGPQAVLGFAGL 289 >gi|91783008|ref|YP_558214.1| putative prepilin peptidase transmembrane protein, CpaA like [Burkholderia xenovorans LB400] gi|91686962|gb|ABE30162.1| Putative prepilin peptidase transmembrane protein, CpaA like protein [Burkholderia xenovorans LB400] Length = 166 Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 2/146 (1%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV-FII 71 L+ A+SD I N + + L + A + + +G ++ Sbjct: 8 LLFVAWAAAVAISDCRWRRISNSIVVAGLAAAFGCALFQCGPFGISPARAGIGALIGLAA 67 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 FF +MG DVK+ W G + ++ G ++++L Sbjct: 68 LLPFFVLGVMGAADVKIFAVLGAWCGM-QALPGLWMAASLAAGAHALWLLITTRTRLAEL 126 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGG 157 + K PY +S+ Sbjct: 127 VRRSGATFELAGKASTPYAACLSVAA 152 >gi|330900442|gb|EGH31861.1| prepilin peptidase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 290 Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QAAAMLVLGWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|289674984|ref|ZP_06495874.1| prepilin peptidase [Pseudomonas syringae pv. syringae FF5] Length = 290 Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QAAAMLVLGWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|5821176|dbj|BAA83726.1| prepilin peptidase [Escherichia coli] gi|15207776|dbj|BAB62907.1| CofP [Escherichia coli] Length = 273 Score = 38.3 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 16/145 (11%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFIICFCFFAF-- 78 A+ D ++P+ + +ML LL A L + + + + I F F Sbjct: 129 AVIDFDHLLLPDSLVYIMLWGGLLAAAFELSPITLKDAVISICGTWITLSTIVQLFIFIR 188 Query: 79 --NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 +G GD+KL+ + A W GW + L +I+GG++ FI R Sbjct: 189 KKEGLGAGDIKLICALAAWIGWY-NIPFLLVISSIIGGVM--FINIKRRFDCGY------ 239 Query: 137 VPKSFLMKNKIPYGIAISMGGLISY 161 + + IP+G AIS+ G + Y Sbjct: 240 -DGNIKNCHVIPFGPAISISGFVIY 263 >gi|307249761|ref|ZP_07531739.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858176|gb|EFM90254.1| Flp operon protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 108 Score = 38.3 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 15/97 (15%) Query: 65 GLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 ++ +I F F N++G GDVKLL + SF F F+ G+L + I Sbjct: 23 AILCLVIGFVLFLLNVIGAGDVKLLAVLMLAVP--SSFAIFFLFLTACSGLLIIII---- 76 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 G + + + +PYGIAIS G L + Sbjct: 77 ---------GWLFYRQTIREKGLPYGIAISAGFLTTL 104 >gi|16803590|ref|NP_465075.1| hypothetical protein lmo1550 [Listeria monocytogenes EGD-e] gi|224501510|ref|ZP_03669817.1| hypothetical protein LmonFR_03167 [Listeria monocytogenes FSL R2-561] gi|16410979|emb|CAC99628.1| comC [Listeria monocytogenes EGD-e] Length = 236 Score = 38.3 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 2/117 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 ++ I + L F ++D+F +PN + IV A L + + + + Sbjct: 98 LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLATIAILYNQSLMDLIYSGGISCLFY 157 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 ++ F F +G GD+K+L + + G+ + F + I+G I+ + L ++ + Sbjct: 158 LLFFIIFRKG-IGLGDIKILIILSTFLGFKIGYYIFFLAI-IMGTIILLTALMLKKV 212 >gi|260897206|ref|ZP_05905702.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio parahaemolyticus Peru-466] gi|308088437|gb|EFO38132.1| peptidase, A24 (type IV prepilin peptidase) family [Vibrio parahaemolyticus Peru-466] Length = 192 Score = 38.3 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVG 65 F+ + F L+ A DL + ++P+++++ + + + A + + + + + G Sbjct: 32 FTVALIFFTFFLIAATFIDLDTMLLPDQLTLPLTWAGIALALTEISPVSLQDAVIGAIAG 91 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW S + +++G I + L Sbjct: 92 YLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGW-QSLPMIILLSSVVGVIFGLVQL 150 Query: 122 TVRMI 126 ++ Sbjct: 151 RLQKQ 155 >gi|149376816|ref|ZP_01894573.1| Type II secretory pathway, prepilin signal peptidase PulO and related peptidase [Marinobacter algicola DG893] gi|149358937|gb|EDM47404.1| Type II secretory pathway, prepilin signal peptidase PulO and related peptidase [Marinobacter algicola DG893] Length = 291 Score = 38.3 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 25/137 (18%) Query: 29 SAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGG 84 S +P +M +L F + D+ + G + + F MG G Sbjct: 160 SMTLP-----LMWLGLILNYFGVLTDFSSAFWGAVAGYLSLWSVYWLFKLVTGKEGMGHG 214 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 D KLL + W GW + + +++G ++ + ++ R +P Sbjct: 215 DFKLLAALGAWLGW-ELLPAVILLSSLVGAVVGISLMVFRKHGREVP------------- 260 Query: 145 NKIPYGIAISMGGLISY 161 IP+G ++ GL+ Sbjct: 261 --IPFGPYLAAAGLLCL 275 >gi|260881316|ref|ZP_05404111.2| type IV prepilin leader peptidase [Mitsuokella multacida DSM 20544] gi|260849089|gb|EEX69096.1| type IV prepilin leader peptidase [Mitsuokella multacida DSM 20544] Length = 217 Score = 38.3 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 +I + +V +DL +I +R+ I +++ LL + VG +VF Sbjct: 81 VFLMIFQYFMVLYTWTDLEQRVIFDRMLIPFAVMGIISIPLLDRVLTDHLMAAAVGGVVF 140 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + I GG D+KL+ + +W G + ++ + +LGG+ ++ +L Sbjct: 141 LALAVLTKGGIGGG-DIKLVAALGLWLG-SDMLMTVVIAGIVLGGMAALIMLA 191 >gi|288939922|ref|YP_003442162.1| Prepilin peptidase [Allochromatium vinosum DSM 180] gi|288895294|gb|ADC61130.1| Prepilin peptidase [Allochromatium vinosum DSM 180] Length = 296 Score = 38.3 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ A+ DL + ++P+ +++ V+ L+ F L D + + + G Sbjct: 137 QAAAALLLTWSLIALAVIDLDTQLLPDSLTLPVLWLGLFLSLFGLFTDSQSAIIGAVAGY 196 Query: 67 IVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW P+ + A++G ++ V ++ Sbjct: 197 LSLWTVFQLFRLATGKEGMGYGDFKLLALFGAWLGW-PALPQIILLSALVGALVGVGLIL 255 Query: 123 VRMITNHIPIF 133 + P+ Sbjct: 256 SGRHESGKPLP 266 >gi|26987368|ref|NP_742793.1| prepilin peptidase [Pseudomonas putida KT2440] gi|24982022|gb|AAN66257.1|AE016254_4 type IV pili prepilin peptidase PilD/XcpA [Pseudomonas putida KT2440] Length = 288 Score = 38.3 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 6/132 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65 V + V L +CL+ +L D ++P+ + + M ++ AF + + + G Sbjct: 129 VEALVALPLTWCLLALSLIDADHQLLPDVLVLPTMWLGLIVNAFGIHVPLADALWGAVAG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KL+ W GW L+ L +++G + + +L Sbjct: 189 YLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLL-SSVVGALFGLCLL 247 Query: 122 TVRMITNHIPIF 133 R I Sbjct: 248 RFRRDAMGTAIP 259 >gi|113869210|ref|YP_727699.1| Type IV pilus prepilin leader peptidase 1 [Ralstonia eutropha H16] gi|113527986|emb|CAJ94331.1| Type IV pilus prepilin leader peptidase 1 [Ralstonia eutropha H16] Length = 304 Score = 38.3 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 53 MDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108 + + G +V + F MG GD KL+ + W GW + + + Sbjct: 195 VTLPDAVIGAAAGYLVLWTAYWLFRLVRGKEGMGFGDFKLMAALGAWLGW-QALPALVLL 253 Query: 109 VAILGGILSVFILTVRMITNHIPIF 133 +++G + + + +R P Sbjct: 254 SSVVGVLFGLANIALRRQERDTPFP 278 >gi|302387440|ref|YP_003823262.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1] gi|302198068|gb|ADL05639.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1] Length = 139 Score = 38.3 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 9/106 (8%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + + +I L A+++DL ++PN + + + G ++ + + LIAL L+ Sbjct: 5 LAAVQAVIFIALLCAASVTDLTKRIVPNWLCLGIAGVSIIGFTPVKLLGILIALPFLLAA 64 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112 + F MGGGD+KL+ + + G T L+ + +++L Sbjct: 65 VFF---------GGMGGGDIKLMAACGLVLGLTKGLLAAMAGLSLL 101 >gi|125973369|ref|YP_001037279.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Clostridium thermocellum ATCC 27405] gi|125713594|gb|ABN52086.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Clostridium thermocellum ATCC 27405] Length = 281 Score = 38.3 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 14/133 (10%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGS---------FLLTAFLLGMDYELIALHLLVGLIVF 69 L+ DL +IPN++ + L F + + L +G Sbjct: 124 LIAVFFIDLDHMIIPNKLVVAALVGGVLPFVYNIFRPMDIYVDRKWWNPLLGAFIGFGFL 183 Query: 70 IICFCFFAF-----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 ++ MGGGDVKL ++ GW + ++ G + V +L + Sbjct: 184 LLVAIVGYLVYKTDEAMGGGDVKLFAPIGLFLGWKMTIVALFISFVSAGIVSIVLLLLKK 243 Query: 125 MITNHIPIFGMFV 137 +FG F+ Sbjct: 244 KERRSTFVFGPFI 256 >gi|328952533|ref|YP_004369867.1| Prepilin peptidase [Desulfobacca acetoxidans DSM 11109] gi|328452857|gb|AEB08686.1| Prepilin peptidase [Desulfobacca acetoxidans DSM 11109] Length = 260 Score = 37.9 bits (87), Expect = 0.47, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 16/157 (10%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVG 65 + ++ L+ ++ DL ++P+ +++ +G LL++ + + + + L G Sbjct: 96 ILLLAYVPFALALLTLSVIDLEQGLLPDVITLPGIGFGLLSSLVFQELSFFSALVGALTG 155 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 VF +A MGGGDVKLL + G L ++ F++ G L+ IL Sbjct: 156 AAVFQGIAWIYAKWAGKQGMGGGDVKLLAMIGAFLGI--QSLPWVIFLSASLGTLTGIIL 213 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 +R + PK L IP+G +++GGL Sbjct: 214 VLRKGRH---------PKETLRSLPIPFGPFLAIGGL 241 >gi|255319719|ref|ZP_05360927.1| bacterial Peptidase A24 domain protein [Acinetobacter radioresistens SK82] gi|262379999|ref|ZP_06073154.1| type IV pilus prepilin peptidase PilD [Acinetobacter radioresistens SH164] gi|255303248|gb|EET82457.1| bacterial Peptidase A24 domain protein [Acinetobacter radioresistens SK82] gi|262298193|gb|EEY86107.1| type IV pilus prepilin peptidase PilD [Acinetobacter radioresistens SH164] Length = 286 Score = 37.9 bits (87), Expect = 0.47, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 53/140 (37%), Gaps = 10/140 (7%) Query: 13 LIPPFCLVFAALS----DLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVGLI 67 ++ L +A ++ D + ++P+R ++ + L ++ L ++G + Sbjct: 134 MLFGLLLTWALITLTFIDFDTQLLPDRYTLPLAALGLALNSYALYTSASSAIWGYVIGFL 193 Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 I + F MG GD KLL + W G L + +++G I+ + +L + Sbjct: 194 CLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPL-IVLLSSLVGAIIGIVLLKI 252 Query: 124 RMITNHIPIFGMFVPKSFLM 143 R ++ Sbjct: 253 RKENQPFAFGPYIAIAGWIA 272 >gi|150403489|ref|YP_001330783.1| peptidase A24B, FlaK-like protein [Methanococcus maripaludis C7] gi|150034519|gb|ABR66632.1| Peptidase A24B, FlaK-like protein [Methanococcus maripaludis C7] Length = 230 Score = 37.9 bits (87), Expect = 0.47, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLLVGLIV 68 ++I L+ A++ D S I + + I + F + A + DY ++ + +I Sbjct: 4 YVIGALGLIMASVMDFRSREIEDYIWIFLAVFGVLFAIYASITFSDYSILINSISGFVIC 63 Query: 69 FIICFCFFAFNIMGGGDVKLL 89 FI+ + F +GGGD K+L Sbjct: 64 FILGYMMFLSG-IGGGDGKML 83 >gi|327479618|gb|AEA82928.1| type 4 prepilin peptidase PilD [Pseudomonas stutzeri DSM 4166] Length = 289 Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGL 66 + L+ + L+ ++ D+ ++P+ + + +L + +F L E + G Sbjct: 131 QAGAMLLLTWGLLAMSMIDVDHQLLPDSLVLPLLWVGLIANSFALFASLEDALWGAIAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + + F MG GD KLL W GW L+ + +++G +L +L Sbjct: 191 LSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLT-ILLSSVVGAVLGSILLR 249 Query: 123 VRMITNHIPIF 133 V+ + PI Sbjct: 250 VQRAESSTPIP 260 >gi|319761632|ref|YP_004125569.1| prepilin peptidase [Alicycliphilus denitrificans BC] gi|330823498|ref|YP_004386801.1| Prepilin peptidase [Alicycliphilus denitrificans K601] gi|317116193|gb|ADU98681.1| Prepilin peptidase [Alicycliphilus denitrificans BC] gi|329308870|gb|AEB83285.1| Prepilin peptidase [Alicycliphilus denitrificans K601] Length = 292 Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 22/152 (14%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 LV AL D + ++P+ +++ +L + LL + L +D + + + + Sbjct: 139 FCAALVALALIDWDTTLLPDDITLPLLWAGLLASVLRWIDVQPVDAVIGAAAGYVSLWLV 198 Query: 75 FFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 ++ F + MG GD KL + WFGW + + + +++G ++ + Sbjct: 199 YWGFKLATGKEGMGYGDFKLFAALGAWFGW-QALVPIVLMASVIGALVGIA--------- 248 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 M S +P+G ++ GGL + Sbjct: 249 ------MKFASSLREGKYVPFGPFLAGGGLAA 274 >gi|114321314|ref|YP_742997.1| peptidase A24A, prepilin type IV [Alkalilimnicola ehrlichii MLHE-1] gi|114227708|gb|ABI57507.1| peptidase A24A, prepilin type IV [Alkalilimnicola ehrlichii MLHE-1] Length = 166 Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 6/142 (4%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYELIALHLLVGLIVFIICFCFFAFN 79 D IPN +++ + L A + + I ++ FA Sbjct: 15 GYWDARHRRIPNLLTLPAALAGLAYAVVTQTAALGELPWGAVAAGAAIALVLTLPGFALG 74 Query: 80 IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPK 139 +GGGDVKLL + + G SF+ + G+ IL R+ + Sbjct: 75 KLGGGDVKLLLAIGLLGGHPAVLSSFVVAAFTVTGLFLALILATRLAPWPGLPGPLRCSL 134 Query: 140 SFLM---KNKIPYGIAISMGGL 158 L + ++P+G+ + G L Sbjct: 135 QRLPGPREARLPFGVGLCAGLL 156 >gi|295109284|emb|CBL23237.1| type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family A24A [Ruminococcus obeum A2-162] Length = 199 Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 6/116 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 S ++ + L+ +L D + IP +++ + FL+ +D + HL+ + Sbjct: 48 SSLLYCLMTSALLTLSLIDWRTYEIPFGINVFL---FLIGIVATVLDRGNLISHLIGAVC 104 Query: 68 VFIICFCFFAF---NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 V F +GGGD+KL+ + GW L+FL I + ++ I Sbjct: 105 VSAFLEILFLLSGGRAIGGGDIKLMAVCGLILGWKQIILAFLLGCIIGSVVHTIRI 160 >gi|189425219|ref|YP_001952396.1| peptidase A24A domain protein [Geobacter lovleyi SZ] gi|189421478|gb|ACD95876.1| peptidase A24A domain protein [Geobacter lovleyi SZ] Length = 258 Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 8/129 (6%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 ++ + L+ D +IP+ +S+ + FL + FL + L ++VG Sbjct: 104 IYSLLVAALIVVTFIDFDHQIIPDEISLPGVGLGFLASFFLPEPGWLSSLLGIVVGWGSL 163 Query: 70 IICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV-AILGGILSVFILTVR 124 + F + MGGGD KLL + G + F+ F +++G + + I+ ++ Sbjct: 164 ALVFYSYLWLTGREGMGGGDAKLLAMLGAFLGLK--AVPFIIFTSSLVGTVAGLSIMALQ 221 Query: 125 MITNHIPIF 133 H+ I Sbjct: 222 RKGRHLAIP 230 >gi|317403503|gb|EFV84006.1| hypothetical protein HMPREF0005_03134 [Achromobacter xylosoxidans C54] Length = 168 Score = 37.9 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 19/155 (12%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGS------FLLTAFLLGMDYELIALHLLVGL 66 L+ + +DL +PN + + A G + + Sbjct: 5 LLFACWNLVLIYTDLRYRRVPNTLIVAGFAGQALWLLAAWLAPAWGYPPRWAGWPMALAG 64 Query: 67 IVFII-CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + F ++ +MG GDVK + + G+ P ++ L ++L G+ ++ L + Sbjct: 65 FALALPFFPLWSRRLMGAGDVKAIAILGLLAGFAPLVMT-LVAASLLAGLHALSYLFLSR 123 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 L + PYG + + L Sbjct: 124 S-----------RALPLRARQTPYGAYLGVAALSV 147 >gi|251796114|ref|YP_003010845.1| peptidase A24A domain protein [Paenibacillus sp. JDR-2] gi|247543740|gb|ACT00759.1| peptidase A24A domain protein [Paenibacillus sp. JDR-2] Length = 251 Score = 37.9 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 1/121 (0%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ V +SDL ++PNR+ + F+ L + + + + ++ Sbjct: 104 LLLVSMSVILTVSDLKYMLLPNRILLFFAPLFIALRCLFPVGSIWLHIGGALAGGGVLLA 163 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 MG GDVKLL W P+ + G + ++ +++ PI Sbjct: 164 VVILTRGGMGLGDVKLLFLLG-WILGLPNLIPAFILSCFFGSTVGGLLMLFKVVKRKQPI 222 Query: 133 F 133 Sbjct: 223 P 223 >gi|329912558|ref|ZP_08275773.1| Leader peptidase (Prepilin peptidase) [Oxalobacteraceae bacterium IMCC9480] gi|327545588|gb|EGF30756.1| Leader peptidase (Prepilin peptidase) [Oxalobacteraceae bacterium IMCC9480] Length = 288 Score = 37.9 bits (87), Expect = 0.51, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 6/132 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVG 65 + L+ + L+ + D + ++P+ ++ +L LL + + G Sbjct: 130 ITGLATLVFAWLLIAMSGIDADTQLLPDDLTYPLLWIGLLLNVNATFVPLGDAVIGAAAG 189 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + + +++G ++ V ++ Sbjct: 190 YLCLWSVYWVFKLLTGKEGMGYGDFKLLAALGAWLGWQMLPM-IILLSSLVGALVGVSLI 248 Query: 122 TVRMITNHIPIF 133 PI Sbjct: 249 VFGKRGRENPIP 260 >gi|332800430|ref|YP_004461929.1| Prepilin peptidase [Tepidanaerobacter sp. Re1] gi|332698165|gb|AEE92622.1| Prepilin peptidase [Tepidanaerobacter sp. Re1] Length = 249 Score = 37.9 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 36/79 (45%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L+ +A +DL +IP++V + LL L+ L L V I F+ Sbjct: 106 LIVSAFTDLEYQIIPDKVVLTTAVIGLLLNILIHGKDVLYYLMGSVLGGGTIFLIAAFSQ 165 Query: 79 NIMGGGDVKLLTSTAVWFG 97 MGGGD+KL + ++ G Sbjct: 166 GGMGGGDIKLFAAVGLFLG 184 >gi|256004345|ref|ZP_05429326.1| peptidase A24A domain protein [Clostridium thermocellum DSM 2360] gi|255991629|gb|EEU01730.1| peptidase A24A domain protein [Clostridium thermocellum DSM 2360] gi|316940397|gb|ADU74431.1| Prepilin peptidase [Clostridium thermocellum DSM 1313] Length = 281 Score = 37.9 bits (87), Expect = 0.52, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 14/133 (10%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGS---------FLLTAFLLGMDYELIALHLLVGLIVF 69 L+ DL +IPN++ + L F + + L +G Sbjct: 124 LIAVFFIDLDHMIIPNKLVVAALVGGVLPFVYNIFRPMDIYVDRKWWNPLLGAFIGFGFL 183 Query: 70 IICFCFFAF-----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 ++ MGGGDVKL ++ GW + ++ G + V +L + Sbjct: 184 LLVAIVGYLVYKTDEAMGGGDVKLFAPIGLFLGWKMTIVALFISFVSAGIVSIVLLLLKK 243 Query: 125 MITNHIPIFGMFV 137 +FG F+ Sbjct: 244 KERRSTFVFGPFI 256 >gi|49089278|gb|AAT51664.1| PA4295 [synthetic construct] Length = 161 Score = 37.9 bits (87), Expect = 0.53, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 43/149 (28%), Gaps = 2/149 (1%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L D+ + N + + + ++ ++ + + +C Sbjct: 4 LALALWASVCGYQDIKRLRVSNWLILGGFLISFVYLYVKESSLTGATANMAMTALFIGVC 63 Query: 73 FCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + +G DVK L + + S F + + + L R + Sbjct: 64 LSLPGYLLGRLGAADVKYLAALGLASDPLTVLYSLAFGCLLCIALFILVKLFKRSVEKSA 123 Query: 131 PIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 + + ++ P+ A+ G L Sbjct: 124 MNEEVRLRRAPSKDKSFPFIFAMGAGLLA 152 >gi|254831951|ref|ZP_05236606.1| hypothetical protein Lmon1_11380 [Listeria monocytogenes 10403S] gi|284801940|ref|YP_003413805.1| hypothetical protein LM5578_1695 [Listeria monocytogenes 08-5578] gi|284995082|ref|YP_003416850.1| hypothetical protein LM5923_1647 [Listeria monocytogenes 08-5923] gi|284057502|gb|ADB68443.1| hypothetical protein LM5578_1695 [Listeria monocytogenes 08-5578] gi|284060549|gb|ADB71488.1| hypothetical protein LM5923_1647 [Listeria monocytogenes 08-5923] Length = 236 Score = 37.9 bits (87), Expect = 0.55, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 2/117 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 ++ I + L F ++D+F +PN + IV A L + + + + Sbjct: 98 LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLATIAILYNQTLMDLIYSGGISCLFY 157 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 ++ F F +G GD+K+L + + G+ + F + I+G I+ + L ++ + Sbjct: 158 LLFFIIFRKG-IGLGDIKILIILSTFLGFKIGYYIFFLAI-IMGTIILLTALMLKKV 212 >gi|319651728|ref|ZP_08005854.1| hypothetical protein HMPREF1013_02466 [Bacillus sp. 2_A_57_CT2] gi|317396547|gb|EFV77259.1| hypothetical protein HMPREF1013_02466 [Bacillus sp. 2_A_57_CT2] Length = 180 Score = 37.9 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 +V +SD +IPN+V +V L+ + +L + + ++ Sbjct: 35 LVSLMVIIFVSDYKYMIIPNKVLLVFGVILTAERILIPLSPWWDSLAGGILGFLLLLFIA 94 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 + MGGGD+KL + + G LSF + G L + + ++ PI Sbjct: 95 VISKGGMGGGDIKLYSVIGIALGVKLVLLSFFLAT-LFGAFLGGTGMLIGVVKKGKPIP 152 >gi|187479018|ref|YP_787042.1| type 4 prepilin leader peptidase [Bordetella avium 197N] gi|115423604|emb|CAJ50143.1| type 4 prepilin leader peptidase [Bordetella avium 197N] Length = 168 Score = 37.9 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 6/112 (5%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF------LLGMDYELIALH 61 + +++ + D +PN + + L L Sbjct: 14 ENVWWMVLLAFNATVVVYDFRWRRVPNWLLSFAALAQLAWLAWHSISGAWPASGPSGWLD 73 Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113 + ++ ++ F+ +MG GDVK L +W G+ P + + G Sbjct: 74 AGLPFVIGLLFIVFWRLRLMGAGDVKYLAVLGLWLGFMPWLMVLMLASVPCG 125 >gi|260426147|ref|ZP_05780126.1| peptidase A24A prepilin type IV [Citreicella sp. SE45] gi|260420639|gb|EEX13890.1| peptidase A24A prepilin type IV [Citreicella sp. SE45] Length = 165 Score = 37.9 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + P CL + + +D+ I N+ ++++L F++ + ++ + + Sbjct: 16 VLPICL-YVSFTDMRELRITNQANLLLLLVFMVVGAFA-LPFDAYLWRYTHLAVALVAGI 73 Query: 74 CFFAFNIMGGGDVKLLTSTA 93 A IMG GD K + + A Sbjct: 74 ALNAGGIMGAGDAKFIAAAA 93 >gi|190574776|ref|YP_001972621.1| putative transmembrane peptidase [Stenotrophomonas maltophilia K279a] gi|190012698|emb|CAQ46326.1| putative transmembrane peptidase [Stenotrophomonas maltophilia K279a] Length = 182 Score = 37.9 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 3/111 (2%) Query: 23 ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC--FFAFNI 80 A+SDL++ +PN + + + F+A Sbjct: 17 AISDLYARRVPNAWLLSASIIAIALIIAGQFSTPRQPWPAHAAGAALGLVALLPFYAIRW 76 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 MG GDVK + GW + L ++ G+ + I+ R + +P Sbjct: 77 MGAGDVKFFAVLGLMLGW-KALLPIWMVASLAAGLHAAVIIVGRRLGVMLP 126 >gi|258623897|ref|ZP_05718850.1| hypothetical protein VMB_01510 [Vibrio mimicus VM603] gi|258583691|gb|EEW08487.1| hypothetical protein VMB_01510 [Vibrio mimicus VM603] Length = 152 Score = 37.9 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 16/157 (10%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M ++ + + + + SD + IPN ++ L + LLG+ I Sbjct: 1 MMTILLLQWILIAVLLYLSLAVCYSDNQNRKIPN----TLVWQIGLCSVLLGILGGYIFT 56 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 L V ++ F + +GGGD+KL S FG P +L + + L + + Sbjct: 57 ASAHALAVLLLGFLTWLSGKIGGGDIKL--SFVFLFGIDPQWLILCAPLLVCLTTLQIVV 114 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157 + + + +P + K IP GI +++ G Sbjct: 115 MGLYAQLSDVPAY----------KKGIPLGIPLALTG 141 >gi|320529765|ref|ZP_08030843.1| peptidase, A24 family protein [Selenomonas artemidis F0399] gi|320138004|gb|EFW29908.1| peptidase, A24 family protein [Selenomonas artemidis F0399] Length = 196 Score = 37.9 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L++ A D+ + + I + +F AF G + +L G + ++ + Sbjct: 51 LFSAVLLWLAFLDVRDGFLYD--CITLPFAFAGVAFSAGGLTMPLIDAILGGTLCGVLFY 108 Query: 74 CFF--AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 C + A MGGGDVK +W GW + ++ ++ ++GG+++ F+L R Sbjct: 109 CLYIAARGGMGGGDVKFALGIGLWLGWESAIIA-VWTAFLIGGMMAAFLLLTRRKGRRDA 167 Query: 132 IF 133 + Sbjct: 168 LP 169 >gi|254828215|ref|ZP_05232902.1| comC [Listeria monocytogenes FSL N3-165] gi|258600604|gb|EEW13929.1| comC [Listeria monocytogenes FSL N3-165] Length = 236 Score = 37.9 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 2/117 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 ++ I + L F ++D+F +PN + IV A L + + + + Sbjct: 98 LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLATIAILYNQTLMDLIYSGGISCLFY 157 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 ++ F F +G GD+K+L + + G+ + F + I+G I+ + L ++ + Sbjct: 158 LLFFIIFRKG-IGLGDIKILIILSTFLGFKIGYYIFFLAI-IMGTIILLTALMLKKV 212 >gi|217975016|ref|YP_002359767.1| Prepilin peptidase [Shewanella baltica OS223] gi|217500151|gb|ACK48344.1| Prepilin peptidase [Shewanella baltica OS223] Length = 308 Score = 37.6 bits (86), Expect = 0.63, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 21/153 (13%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 I F LV DL ++P+++++ +L ++ + G + Sbjct: 158 ILTFVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIIGAAAGYLSLWSI 217 Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 F F MG GD KLL W GW L + +++G ++ + ++ Sbjct: 218 FWLFKILTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGAVVGITMI------- 269 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 V K N IP+G I+ G I+ Sbjct: 270 --------VSKRLKQGNPIPFGPYIAAAGWIAL 294 >gi|88854697|ref|ZP_01129363.1| Peptidase A24A-like protein [marine actinobacterium PHSC20C1] gi|88815858|gb|EAR25714.1| Peptidase A24A-like protein [marine actinobacterium PHSC20C1] Length = 267 Score = 37.6 bits (86), Expect = 0.63, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 7/130 (5%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLL----GMDYELIALHLLVG 65 FL + AL DL + +PN++ + ++ F L A + A+ Sbjct: 108 AFLYLAAISIALALIDLDTHTLPNKIVLPSIVVGFALLALASFGTGNWGALVGAVAGAAA 167 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL--FFVAILGGILSVFILTV 123 L VF + MG GDVKL ++ GW + + F +LGG+ ++ +L + Sbjct: 168 LFVFYFVVALISPRGMGMGDVKLAAVLGLYLGWLGWGVLAVGAFAAFLLGGVFAIALLLI 227 Query: 124 RMITNHIPIF 133 I Sbjct: 228 GRARRRTAIP 237 >gi|304412465|ref|ZP_07394071.1| Prepilin peptidase [Shewanella baltica OS183] gi|307307124|ref|ZP_07586862.1| Prepilin peptidase [Shewanella baltica BA175] gi|304349107|gb|EFM13519.1| Prepilin peptidase [Shewanella baltica OS183] gi|306910363|gb|EFN40794.1| Prepilin peptidase [Shewanella baltica BA175] Length = 308 Score = 37.6 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 21/153 (13%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 I F LV DL ++P+++++ +L ++ + G + Sbjct: 158 ILTFVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIVGAAAGYLSLWSI 217 Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 F F MG GD KLL W GW L + +++G ++ + ++ Sbjct: 218 FWLFKILTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGAVVGITMI------- 269 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 V K N IP+G I+ G I+ Sbjct: 270 --------VSKRLKQGNPIPFGPYIAAAGWIAL 294 >gi|254455857|ref|ZP_05069286.1| type II Secretion PilD [Candidatus Pelagibacter sp. HTCC7211] gi|207082859|gb|EDZ60285.1| type II Secretion PilD [Candidatus Pelagibacter sp. HTCC7211] Length = 245 Score = 37.6 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 11/113 (9%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPN--RVSIVMLGSFLLTAFLLGMDYELIALHLLV 64 + + +F+I + DL +IPN ++ +G L + L+ Sbjct: 87 ITTLLFIILALTFIIIFFIDLKHYIIPNGLTFPLMFIGFIKSFDPNLNELFPNYINSLIG 146 Query: 65 GLIVF-IICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110 G+ + II F + + MG GD KLL++ WFGW + F+ F + Sbjct: 147 GVFGYGIIWAIIFIYKVLRNKEGMGLGDAKLLSAIGFWFGWI--AIPFVIFSS 197 >gi|254515230|ref|ZP_05127291.1| type IV pilus prepilin peptidase PilD [gamma proteobacterium NOR5-3] gi|219677473|gb|EED33838.1| type IV pilus prepilin peptidase PilD [gamma proteobacterium NOR5-3] Length = 295 Score = 37.6 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 19 LVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 L+ A+ D+ + ++P+ +++ +L L FL L G ++ + F Sbjct: 149 LIALAVIDIDTQLLPDDITLPLLWAGLLFNVFLGPTAPVDAILGAAGGYLLLWSIYWLFK 208 Query: 78 FN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 MG GD KLL + W GW + + + +G +L V I+ V+ P+ Sbjct: 209 LATGKEGMGYGDFKLLAALGAWLGW-QNLPIIILLSSAVGAVLGVLIIVVQGKDRSHPLP 267 >gi|212637456|ref|YP_002313981.1| Prepilin peptidase [Shewanella piezotolerans WP3] gi|212558940|gb|ACJ31394.1| Prepilin peptidase [Shewanella piezotolerans WP3] Length = 303 Score = 37.6 bits (86), Expect = 0.65, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 23/153 (15%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 I F LV DL ++P+++++ +L L+ L G + + + Sbjct: 153 ILTFALVVLTGIDLDEMLLPDQITLPLLWLGLIL-NLSGTFVSMSDAIVGAAAGYLSLWS 211 Query: 74 CFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 F+AF + MG GD KLL WFGW L + +++G I+ + ++ + + Sbjct: 212 VFWAFKLLTGKEGMGYGDFKLLAVFGAWFGWQVLPL-VILLSSLVGAIVGISLIAFKKLN 270 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 P IP+G I+ G I+ Sbjct: 271 QGNP---------------IPFGPYIAAAGWIA 288 >gi|153002447|ref|YP_001368128.1| prepilin peptidase [Shewanella baltica OS185] gi|151367065|gb|ABS10065.1| Prepilin peptidase [Shewanella baltica OS185] Length = 308 Score = 37.6 bits (86), Expect = 0.66, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 21/153 (13%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 I F LV DL ++P+++++ +L ++ + G + Sbjct: 158 ILTFVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIIGAAAGYLSLWSI 217 Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 F F MG GD KLL W GW L + +++G ++ + ++ Sbjct: 218 FWLFKILTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGAVVGITMI------- 269 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 V K N IP+G I+ G I+ Sbjct: 270 --------VSKRLKQGNPIPFGPYIAAAGWIAL 294 >gi|315127773|ref|YP_004069776.1| leader peptide processing enzyme [Pseudoalteromonas sp. SM9913] gi|315016287|gb|ADT69625.1| leader peptide processing enzyme [Pseudoalteromonas sp. SM9913] Length = 292 Score = 37.6 bits (86), Expect = 0.66, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 63/155 (40%), Gaps = 21/155 (13%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGL 66 + ++++ + LV D+ ++P+++++ +L L+ + + + + G Sbjct: 134 QALLYIVVTWALVALTFIDIDHMLLPDQLTLPLLWLALIASVMGYTIAPSDAIIGAACGY 193 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL GW S L+ + +++G ++ + +L+ Sbjct: 194 LSLWSVFWLFKLITGKEGMGYGDFKLLAVFGAILGW-QSLLTIILLSSVVGAVIGIALLS 252 Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGG 157 + + IP+G +++ G Sbjct: 253 I---------------QGKDKATPIPFGPYLAIAG 272 >gi|317491681|ref|ZP_07950116.1| type IV leader peptidase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920115|gb|EFV41439.1| type IV leader peptidase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 112 Score = 37.6 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 D+F I + +++ S + FL + ++ ++ + F F + GG Sbjct: 2 WQDIFFRKITHSSLLLLFVSLIPLIFL-----QQQWPNVTFAILTLMGGFLLFVARLWGG 56 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 GD KL+ A+ F F FLF A LGG +++F L +I + F M +P Sbjct: 57 GDAKLVAILALAF-QGALFYDFLFLTAFLGGTIAIFGLVFFVIICVVTAFPMVLP 110 >gi|291523560|emb|CBK81853.1| type 4 prepilin peptidase 1 . Aspartic peptidase. MEROPS family A24A [Coprococcus catus GD/7] Length = 254 Score = 37.6 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 42/105 (40%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + S V + L+ ++ D + IP ++I + + + L + + Sbjct: 102 LSSGVMCLMTSALIVLSVIDWRTYEIPVAINIFLGILGVASVILELDAVLAHLMGAVCVS 161 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111 + ++ + +GGGD+KL+ + + GW L+F I Sbjct: 162 GILLVIYLLSGGRAIGGGDIKLMAACGLILGWQLIILAFFLGCII 206 >gi|283778978|ref|YP_003369733.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068] gi|283437431|gb|ADB15873.1| peptidase A24A prepilin type IV [Pirellula staleyi DSM 6068] Length = 145 Score = 37.6 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 DL + +P+ +S + G + + G+ + L GL+ F I F F +GG Sbjct: 18 WHDLRTREVPDWISYAL-GLWGIVCIACGLGNNSWSGVFLGGLLAFAITFPFCWLGGLGG 76 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 DV+L+ + FG + L A+LGG+L++ + Sbjct: 77 ADVRLMVGLGMIFGPSVLLLL-AILTALLGGMLALVAVA 114 >gi|312621775|ref|YP_004023388.1| peptidase a24a prepilin type iv [Caldicellulosiruptor kronotskyensis 2002] gi|312202242|gb|ADQ45569.1| peptidase A24A prepilin type IV [Caldicellulosiruptor kronotskyensis 2002] Length = 151 Score = 37.6 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 4/92 (4%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M ++ A+ D+ + IP+ + ++ A + L +L+V Sbjct: 1 MQSLLSLILAVAITAIASYYDIKTRQIPDWI----WALTVVLAIAIWQKNLLKNGNLMVA 56 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG 97 ++FI F + ++GGGD+KL+++ A+ G Sbjct: 57 ALIFICLFLLAYYKLLGGGDLKLISALALLVG 88 >gi|194290796|ref|YP_002006703.1| type IV prepilin peptidase [Cupriavidus taiwanensis LMG 19424] gi|193224631|emb|CAQ70642.1| TYPE 4 PREPILIN PEPTIDASE BIFUNCTIONNAL: LEADER PEPTIDASE AND N-METHYLTRANSFERASE TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 307 Score = 37.6 bits (86), Expect = 0.68, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGL 66 + L+ + L+ + D + ++P+++++ +L LL L + + G Sbjct: 153 QALAALVLVWGLLALTMIDADTQLLPDQITLPLLWIGLLLNVAGLFVALPDAVIGAAAGY 212 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 +V I + F MG GD KL+ + WFGW + + + ++ G + + + Sbjct: 213 LVLWIAYWLFRLLRGKEGMGFGDFKLMAALGAWFGW-QALPALVLLSSVAGVLFGLANIA 271 Query: 123 VRMITNHIPIF 133 +R P Sbjct: 272 LRRQDRDTPFP 282 >gi|159904729|ref|YP_001548391.1| peptidase A24B [Methanococcus maripaludis C6] gi|159886222|gb|ABX01159.1| Peptidase A24B, FlaK domain protein [Methanococcus maripaludis C6] Length = 230 Score = 37.6 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 4/81 (4%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLG---SFLLTAFLLGMDYELIALHLLVGLIV 68 ++I L+ A++ D S I + + I + F + + + +DY ++ + +I Sbjct: 4 YIIGALGLIIASVQDFRSREIEDYIWIFLAVFGVLFAIYSSITLLDYSILINSISGFVIC 63 Query: 69 FIICFCFFAFNIMGGGDVKLL 89 FI+ + F +GGGD K+L Sbjct: 64 FILGYMMFLSG-IGGGDGKML 83 >gi|225376654|ref|ZP_03753875.1| hypothetical protein ROSEINA2194_02296 [Roseburia inulinivorans DSM 16841] gi|225211537|gb|EEG93891.1| hypothetical protein ROSEINA2194_02296 [Roseburia inulinivorans DSM 16841] Length = 158 Score = 37.6 bits (86), Expect = 0.75, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 65/137 (47%), Gaps = 10/137 (7%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 + ++ +A+ LI L A++D+ +IPN++ +++L + +L + L Sbjct: 4 LSNLTVIQTAMTLIFFCGLGILAVTDIKRKIIPNKILVLLLLFWTAGVSMLLILQTEFGL 63 Query: 61 HLL--------VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112 +L +G I+F++C+ + +G GDVKL+ ++ + +F+ ++ Sbjct: 64 TILFESLAGGTIGGIIFLLCYLL-SKGQLGAGDVKLVFVMGLYLT-GERIIGAVFYGTLI 121 Query: 113 GGILSVFILTVRMITNH 129 + SV +L + IT Sbjct: 122 CCVYSVLLLIRKKITRK 138 >gi|227114122|ref|ZP_03827778.1| type 4 prepilin-like proteins leader peptide processing enzyme [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 281 Score = 37.6 bits (86), Expect = 0.75, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 6/115 (5%) Query: 24 LSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN--- 79 + D+ + ++P+ +++ +L L + + + G + + + F + Sbjct: 148 VIDIKTLLLPDVLTLSLLWIGLLFNLSETFVPLSDAVVGAMAGYLSLWLLYWVFKYATGK 207 Query: 80 -IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 +G GD KLL + W GW + + + A+ G ++++ +R P+ Sbjct: 208 EALGYGDFKLLAALGAWLGW-QALPNLVLVAALSGLVVTLVWRGLRKEDTAKPLA 261 >gi|87299149|emb|CAJ76212.1| competence transcription factor C [Bacillus sp. Ob 07] gi|87299163|emb|CAJ76219.1| competence transcription factor C [Bacillus sp. Ob 20] Length = 186 Score = 37.6 bits (86), Expect = 0.75, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 37/102 (36%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + ++ + + + C +GG Sbjct: 79 VTDYIYMLIPNRILAWFACLLILECVFVPLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 138 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 GD+KLL+ G F+ V I+ RM Sbjct: 139 GDIKLLSLLGFIVGLKGIFMILFLASCFSLCFFGVGIVLKRM 180 >gi|92116345|ref|YP_576074.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14] gi|91799239|gb|ABE61614.1| peptidase A24A, prepilin type IV [Nitrobacter hamburgensis X14] Length = 159 Score = 37.6 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 6/143 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVG 65 + +A + V+ A DL +IP+R+++++ + ++ A L G + L V Sbjct: 5 LTTASLSVLGLACVWLAWIDLRDGIIPDRLNLLVAATGVVRMAALAGWEPAGARLCEGVV 64 Query: 66 LIVFIICFCFFAFNI-----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 + + + F +G GDVKLL ++AVW G L + Sbjct: 65 IGAVVWLLRWLYFKWRKLQGLGLGDVKLLAASAVWIGVAGVPTQLLIASVTALAAAGLMQ 124 Query: 121 LTVRMITNHIPIFGMFVPKSFLM 143 L+ R +T + L+ Sbjct: 125 LSKRTVTRQTALPFGPFLALGLL 147 >gi|253689224|ref|YP_003018414.1| Prepilin peptidase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755802|gb|ACT13878.1| Prepilin peptidase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 281 Score = 37.6 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 54/135 (40%), Gaps = 7/135 (5%) Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHL 62 M ++ F +V + D+ + ++P+ +++ +L L + + Sbjct: 129 PGMALCGALILLSFLVVL-TVIDIKTLLLPDVLTLSLLWMGLLFNLSETFVPLRDAVVGA 187 Query: 63 LVGLIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 + G + + + F + +G GD KLL + W GW + + + A+ G ++++ Sbjct: 188 MAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGW-QALPNLVLVAALSGLVVTL 246 Query: 119 FILTVRMITNHIPIF 133 VR P+ Sbjct: 247 IWRGVRKEDTVKPLA 261 >gi|108758056|ref|YP_631308.1| Type IV leader peptidase family protein [Myxococcus xanthus DK 1622] gi|108461936|gb|ABF87121.1| Type IV leader peptidase family protein [Myxococcus xanthus DK 1622] Length = 179 Score = 37.6 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 69/168 (41%), Gaps = 14/168 (8%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVS---IVMLGSFLLTAFLLGMDYELIALHLL 63 V A++ + LV + ++D+ I + V+ + + L +G + ++ Sbjct: 5 VQIALWTVLGVALVISVVTDVLRREILDAVTYPLMAVGLGVRLATEGVGDLEHGLISGVV 64 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 G+ + ++ MG GDVKL+ G+ P+ L+ F++++G + +V L Sbjct: 65 SGVGLALMLLSAALRGRMGWGDVKLMGGVGAVLGF-PAVLAAAAFISLVGALQAVVTLLW 123 Query: 124 RMITNHIPIFGMFVPKSF----------LMKNKIPYGIAISMGGLISY 161 + + + + IPYG+AI++G + + Sbjct: 124 QGAVWDTLAAVVRRWAVWVRLASADAQPAPQRHIPYGVAIALGTVWAL 171 >gi|317131776|ref|YP_004091090.1| Prepilin peptidase [Ethanoligenens harbinense YUAN-3] gi|315469755|gb|ADU26359.1| Prepilin peptidase [Ethanoligenens harbinense YUAN-3] Length = 252 Score = 37.6 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65 + +AV+ LV A D ++IPN + + ++ F G + Sbjct: 98 LSAAVYAAFICALVVTAFIDYDQSIIPNGIVLYILAVGVPAIFFTQGTGLIDRVIGFFAA 157 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + +I + +G GDVKL+ + GW LS L +I+G ++ V ++ Sbjct: 158 SVPLLIAYFV-TRGGLGLGDVKLMAAGGFLLGWKLILLS-LAVGSIVGAVVGVSLVLRGR 215 Query: 126 ITNHIPIF 133 + + Sbjct: 216 KSMRSAVP 223 >gi|70734191|ref|YP_257831.1| hypothetical protein PFL_0689 [Pseudomonas fluorescens Pf-5] gi|68348490|gb|AAY96096.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 155 Score = 37.6 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 2/97 (2%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 F + L AL DL I N +++ + G + ++ + Sbjct: 3 FWVLWVWLAICALQDLRQRHIANGLTLGAALLATVYLLWSGTTWLGAGASQGGWALLLAL 62 Query: 72 CFCF--FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106 F +A MG GDVKL+ + + G +F+ Sbjct: 63 LFTLPGYASGRMGAGDVKLMAALGLASGPLYLLGTFI 99 >gi|114566089|ref|YP_753243.1| leader peptidase (prepilin peptidase) / N-methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337024|gb|ABI67872.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 250 Score = 37.6 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ LV AA +D+ +IP+ +S+ L L F+ + + + GLI I Sbjct: 102 VVLTAILVAAAFTDINKGIIPDTLSLTGLLLGLGLGFVTIGIKQSLLGAVGFGLIFLFIA 161 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + MGGGD+KL + G++ + + + + LGG+ +V +L Sbjct: 162 --LISRGGMGGGDIKLAALIGAFTGFSGALM-VILISSWLGGLWAVVLLI 208 >gi|298485507|ref|ZP_07003590.1| Leader peptidase (Prepilin peptidase) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159971|gb|EFI01009.1| Leader peptidase (Prepilin peptidase) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 290 Score = 37.2 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%) Query: 45 LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100 ++ AF L + G + F F MG GD KLL W GW Sbjct: 169 IVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQI 228 Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 L+ + +++G +L V ++ VR + + PI Sbjct: 229 LPLT-ILLSSLVGAVLGVIMMRVRRVESGTPIP 260 >gi|312621078|ref|YP_003993806.1| type iv prepilin peptidase tadv/cpaa [Photobacterium damselae subsp. damselae] gi|311872799|emb|CBX86890.1| Type IV prepilin peptidase TadV/CpaA [Photobacterium damselae subsp. damselae] Length = 146 Score = 37.2 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 16/139 (11%) Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80 + + D+ I N+ +V +GS L + +Y ++ + + + FI+ F I Sbjct: 18 YICIQDIRLRKISNKSCVV-VGSICLILSINQANYSIVPYTITIFIFGFILF----LFRI 72 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140 + GD+KL+++ ++ L+ + + + G + I+ +R+ KS Sbjct: 73 IAAGDIKLISAFSIAIDPQYILLTLICVLFLGGLVAFFQIIWLRVT-----------RKS 121 Query: 141 FLMKNKIPYGIAISMGGLI 159 +PYG+ I +G L+ Sbjct: 122 LNDSLGVPYGVPICIGCLL 140 >gi|121998801|ref|YP_001003588.1| prepilin peptidase [Halorhodospira halophila SL1] gi|121590206|gb|ABM62786.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Halorhodospira halophila SL1] Length = 296 Score = 37.2 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 58/147 (39%), Gaps = 8/147 (5%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ + L+ AA D ++P+ +++ L L+ + + + + Sbjct: 147 LLLTWALIAAAAIDYEHYLLPDALTLPALWLGLIWSVVDPGPPTPTDAIIGAVAGYLALW 206 Query: 73 FCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI-LTVRM 125 F + MG GD KL + W GW + + + F A+ G ++++ + + R Sbjct: 207 AIFHGHRLVTGREGMGYGDFKLTAALGAWLGW-QALPALVLFAALTGLLVAIVLAVRSRP 265 Query: 126 ITNHIPIFGMFVPKSFLMKNKIPYGIA 152 + +P +++ P G+A Sbjct: 266 LGQPLPFGPALALAGWVLLVLSPSGVA 292 >gi|332702808|ref|ZP_08422896.1| Prepilin peptidase [Desulfovibrio africanus str. Walvis Bay] gi|332552957|gb|EGJ50001.1| Prepilin peptidase [Desulfovibrio africanus str. Walvis Bay] Length = 256 Score = 37.2 bits (85), Expect = 0.82, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 20/152 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIV---MLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 +I L+ A+ DL + ++P+R+++ + F + L + G Sbjct: 106 MILGGMLLVASGIDLDNFILPDRLTLSGFPLALGFAVLRPDLALSDATWGAVAGAGAFKL 165 Query: 70 IICFCFFAFNI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 I F + +G GDVKL+ W GW ++ + +L + Sbjct: 166 IQVSYKFLRGVDGLGTGDVKLMLLIGAWLGWQ---------------LVPMAVLVGSVAA 210 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 + I K +PYG +S+G + Sbjct: 211 LPVGILYALRSKRTGQPAIVPYGPFLSLGAMA 242 >gi|297543565|ref|YP_003675867.1| peptidase A24A prepilin type IV [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841340|gb|ADH59856.1| peptidase A24A prepilin type IV [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 147 Score = 37.2 bits (85), Expect = 0.83, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L + + +DL +P+ + + + + ++ L + I+ +I F Sbjct: 13 MILSYLSYTDLKKREVPDFAVLAL----FIYSLFTCTSFKESILMAALVFILLLIPSILF 68 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112 +GGGD+KLLT+ A + G S L+F F+ ++ Sbjct: 69 E-GSIGGGDIKLLTALAFFMGRDFSVLAFPMFILLV 103 >gi|264676896|ref|YP_003276802.1| peptidase A24A-like protein [Comamonas testosteroni CNB-2] gi|299529714|ref|ZP_07043151.1| peptidase A24A-like protein [Comamonas testosteroni S44] gi|262207408|gb|ACY31506.1| peptidase A24A-like protein [Comamonas testosteroni CNB-2] gi|298722577|gb|EFI63497.1| peptidase A24A-like protein [Comamonas testosteroni S44] Length = 289 Score = 37.2 bits (85), Expect = 0.84, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 20/143 (13%) Query: 36 VSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN----IMGGGDVKLLTS 91 + ++ G + + + G + + F F MG GD KL + Sbjct: 163 LPLLWAGLIASALQWTSVPLQQSLWGAVAGYMSLWLIFWAFKLATGKEGMGYGDFKLFAA 222 Query: 92 TAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGI 151 WFGW + + + +++G ++ + + + +P+G Sbjct: 223 LGAWFGW-QALVPIILMASVVGAVIGIAL---------------KINSKLREGGYVPFGP 266 Query: 152 AISMGGLISYPDSYLFKVALMGL 174 ++ GG +S ++ GL Sbjct: 267 FLAGGGFVSLIWGPQAVLSFAGL 289 >gi|312143778|ref|YP_003995224.1| Prepilin peptidase [Halanaerobium sp. 'sapolanicus'] gi|311904429|gb|ADQ14870.1| Prepilin peptidase [Halanaerobium sp. 'sapolanicus'] Length = 250 Score = 37.2 bits (85), Expect = 0.85, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 20 VFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 + ++ D +IPN ++ +L F+ + L +++ ++ + F Sbjct: 110 IVISVIDYKYMIIPNVITYSGILIGFISAIIFDYLSIFDSLLGIVIPALILLAVALIFK- 168 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 MG GDVKL+ + G+ S +S +F +++G ++ + ++ + Sbjct: 169 GGMGMGDVKLVAMLGAFLGYKYSLMS-IFIGSLVGSVIGLSLMGL 212 >gi|330872528|gb|EGH06677.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 290 Score = 37.2 bits (85), Expect = 0.85, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 A L+ + L+ +L D ++P+ V ++ ++ AF L + G Sbjct: 131 QVAAILVLSWGLLAMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLSDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 VR + + PI Sbjct: 250 VRRVESGTPIP 260 >gi|297537719|ref|YP_003673488.1| Prepilin peptidase [Methylotenera sp. 301] gi|297257066|gb|ADI28911.1| Prepilin peptidase [Methylotenera sp. 301] Length = 290 Score = 37.2 bits (85), Expect = 0.87, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 8/126 (6%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 I F L+ D + ++P+ +++ +L LL G A+ + I+ Sbjct: 142 IFTFALIALTFIDFDTQLLPDDITLPLLWLGLLLNLNNGFTDLKSAV-IGAMAGYLILWS 200 Query: 74 CFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 ++AF + MG GD KLL + WFGW + + ++LG ++ + ++ Sbjct: 201 VYWAFKLVTGKEGMGYGDFKLLAALGAWFGW-QLLPAVILLSSVLGAVIGISLIVFTKRG 259 Query: 128 NHIPIF 133 IP+ Sbjct: 260 REIPMP 265 >gi|261820722|ref|YP_003258828.1| prepilin peptidase [Pectobacterium wasabiae WPP163] gi|261604735|gb|ACX87221.1| Prepilin peptidase [Pectobacterium wasabiae WPP163] Length = 282 Score = 37.2 bits (85), Expect = 0.87, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 50/115 (43%), Gaps = 6/115 (5%) Query: 24 LSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN--- 79 + D+ + ++P+ +++ +L G L + + + G + + + F + Sbjct: 149 VIDIKTLLLPDVLTLSLLWGGLLFNLSETFVPLGDAVVGAMAGYLSLWLLYWVFKYATGK 208 Query: 80 -IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 +G GD KLL + W GW + + + A+ G ++++ +R + P+ Sbjct: 209 EALGYGDFKLLAALGAWLGWR-ALPNLVLVAALSGLVVTLVWRGLRKEETNKPLA 262 >gi|134046086|ref|YP_001097572.1| preflagellin peptidase [Methanococcus maripaludis C5] gi|132663711|gb|ABO35357.1| preflagellin peptidase, Aspartic peptidase, MEROPS family A24B [Methanococcus maripaludis C5] Length = 230 Score = 37.2 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL---HLLVGLIV 68 ++I L+ A++ D S I + + I + +L A + ++ + +I Sbjct: 4 YVIGALGLIIASVMDFRSREIEDYIWIFLAVFGILFAIYSSITLSDYSILINSISGFVIC 63 Query: 69 FIICFCFFAFNIMGGGDVKLL 89 FI+ + F +GGGD K+L Sbjct: 64 FILGYMMFLSG-IGGGDGKML 83 >gi|225024580|ref|ZP_03713772.1| hypothetical protein EIKCOROL_01457 [Eikenella corrodens ATCC 23834] gi|224942731|gb|EEG23940.1| hypothetical protein EIKCOROL_01457 [Eikenella corrodens ATCC 23834] Length = 285 Score = 37.2 bits (85), Expect = 0.88, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 25/154 (16%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ LV D + ++P+++++ ++ L + + L +VG + + Sbjct: 132 LVFTAVLVALTFIDADTQLLPDQLTLPLIWLGLLFNWQVGFVSLPSALLGAVVGYLSLWL 191 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 F F MG GD KLL + W G S L + FVA L G+++ ++ Sbjct: 192 LFHLFKLITGKEGMGYGDFKLLAALGAWLGV--STLPVIVFVAALVGLVAALVM------ 243 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 I +G A+++ G + + Sbjct: 244 ------------RAAKGQPIAFGPALAIAGWLVF 265 >gi|297570269|ref|YP_003691613.1| Prepilin peptidase [Desulfurivibrio alkaliphilus AHT2] gi|296926184|gb|ADH86994.1| Prepilin peptidase [Desulfurivibrio alkaliphilus AHT2] Length = 270 Score = 37.2 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 6/118 (5%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 ++ I L+ DL +IP+ +S+ ++ F + L G+ + L +L+G Sbjct: 113 LIYFIFSAALLAILFIDLDHQLIPDVISLPGIVLGFAASFVLSGVTWVDAGLGILLGGGS 172 Query: 69 FIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 F + + + MGGGD+KLL + GW S + ++LG ++ + + Sbjct: 173 FYLVALGYRLATGRDGMGGGDIKLLAMLGAFLGW-QSLPFIILASSLLGLVVGIGAMI 229 >gi|26987313|ref|NP_742738.1| hypothetical protein PP_0575 [Pseudomonas putida KT2440] gi|148545864|ref|YP_001265966.1| peptidase A24A, prepilin type IV [Pseudomonas putida F1] gi|24981961|gb|AAN66202.1|AE016248_5 conserved hypothetical protein [Pseudomonas putida KT2440] gi|148509922|gb|ABQ76782.1| peptidase A24A, prepilin type IV [Pseudomonas putida F1] gi|313496949|gb|ADR58315.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1] Length = 156 Score = 37.2 bits (85), Expect = 0.90, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 7/121 (5%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELIALHLLVGLIVFI 70 ++ L + D+ I N +++ G L F G + + IV + Sbjct: 4 IVLLLWLALCSEQDVRQRQISNVLTLGAAGCALAWLFSTGHSWIGAEASEAGWALAIVML 63 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + + G DVKL+ + A+ ++ I G+ + L R + Sbjct: 64 LTLPGYMLGRFGADDVKLMGALALATSPQ-----YVLGTFIGAGVTVLVWLLTRRRLWTL 118 Query: 131 P 131 Sbjct: 119 L 119 >gi|229172044|ref|ZP_04299609.1| Peptidase A24A domain protein [Bacillus cereus MM3] gi|228611387|gb|EEK68644.1| Peptidase A24A domain protein [Bacillus cereus MM3] Length = 249 Score = 37.2 bits (85), Expect = 0.91, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + ++ + + + C +GG Sbjct: 122 VTDYIYMLIPNRILAWFACLLILECVFVPLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KLL+ G F+ V I+ RM M Sbjct: 182 GDIKLLSLLGFIVGLKGIFMILFLASCFSLCFFGVGIVLKRM----------------KM 225 Query: 144 KNKIPYGIAISMGGL 158 +++IP+G IS+G + Sbjct: 226 RSQIPFGPFISLGAI 240 >gi|221194980|ref|ZP_03568036.1| peptidase, A24 (type IV prepilin peptidase) family [Atopobium rimae ATCC 49626] gi|221184883|gb|EEE17274.1| peptidase, A24 (type IV prepilin peptidase) family [Atopobium rimae ATCC 49626] Length = 180 Score = 37.2 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 12/107 (11%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 + A + D+ + IP+ V +++ +++ G ++ C Sbjct: 18 MVMGIATVCDIKTRTIPHEVPLLLGALWVIDVCSAAATPTKGWEMSAGGSLMRSACMLMA 77 Query: 77 AFN------------IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111 +GGGD+K+L+S A+ G+ + A+ Sbjct: 78 LLATSKFFILITKQAGIGGGDIKMLSSLALILGFEDLCVVIFSACAL 124 >gi|253995891|ref|YP_003047955.1| Prepilin peptidase [Methylotenera mobilis JLW8] gi|253982570|gb|ACT47428.1| Prepilin peptidase [Methylotenera mobilis JLW8] Length = 289 Score = 37.2 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 6/125 (4%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFIIC 72 I L+ D + ++P+ +++ +L +L G D + + + G +V Sbjct: 141 IFALALITLTFIDFDTQLLPDDITLPLLWLGILFNLNSGFTDLKSSVIGAMAGYMVLWSV 200 Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 + F MG GD KLL + WFGW + + + LG I+ + ++ + Sbjct: 201 YWLFKLIRGKEGMGYGDFKLLAAIGAWFGW-QLLPAVVLLSSTLGAIIGIALIVLTKRGK 259 Query: 129 HIPIF 133 +P+ Sbjct: 260 EVPMP 264 >gi|158320911|ref|YP_001513418.1| peptidase A24A prepilin type IV [Alkaliphilus oremlandii OhILAs] gi|158141110|gb|ABW19422.1| peptidase A24A prepilin type IV [Alkaliphilus oremlandii OhILAs] Length = 174 Score = 37.2 bits (85), Expect = 0.94, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 1/105 (0%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 L + D+ IP+ + + +LGS +L +G D I +LV + ++ + Sbjct: 46 ILSVIMILDIRYLKIPDALIVFLLGSSILNVATVG-DINFIISRILVFFSISLLMIIYSL 104 Query: 78 FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + +GGGDVKL++ ++ FG+ F+ + + IL Sbjct: 105 ISGVGGGDVKLISVLSLIFGFKEILCIFILSIILAAAASVFLILM 149 >gi|126665141|ref|ZP_01736124.1| Prepilin peptidase [Marinobacter sp. ELB17] gi|126630511|gb|EBA01126.1| Prepilin peptidase [Marinobacter sp. ELB17] Length = 291 Score = 37.2 bits (85), Expect = 0.97, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 57/141 (40%), Gaps = 21/141 (14%) Query: 26 DLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NI 80 D + ++P+ +++ +L ++ F + ++ +VG + + F Sbjct: 151 DFDTQLLPDSITLPLLWLGLMVNYFGQLVPFDEAFWGAIVGYLALWSVYWLFKLVTGKEG 210 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140 MG GD KLL + W GWT + + +++G + + ++ + +P Sbjct: 211 MGYGDFKLLAALGAWLGWT-LLPAVILLSSVVGAAVGIALMVFKQQGREVP--------- 260 Query: 141 FLMKNKIPYGIAISMGGLISY 161 IP+G ++ GL+ Sbjct: 261 ------IPFGPYLATAGLMCL 275 >gi|262193752|ref|YP_003264961.1| peptidase A24A domain protein [Haliangium ochraceum DSM 14365] gi|262077099|gb|ACY13068.1| peptidase A24A domain protein [Haliangium ochraceum DSM 14365] Length = 320 Score = 37.2 bits (85), Expect = 0.98, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 5/113 (4%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 V F LV A DL +I ++++ + F LL + + +G V Sbjct: 130 VVLAAFAFVLVVIAFIDLDHRLILDKITYPGIPIFYGLGLLLERPWLDGLIGAALGYGVV 189 Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 + + MG GD KLL FGW + L+ LF +I+G +L + Sbjct: 190 RLLADGYRLLTGREGMGYGDGKLLALIGALFGW-QAVLASLFLGSIIGSVLGI 241 >gi|145297498|ref|YP_001140339.1| type IV prepilin peptidase TapD [Aeromonas salmonicida subsp. salmonicida A449] gi|148887160|sp|A2T195|LEP4_AERS4 RecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; Includes: RecName: Full=Leader peptidase; AltName: Full=Prepilin peptidase; Includes: RecName: Full=N-methyltransferase gi|148887161|sp|P0C423|LEP4_AERSA RecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; Includes: RecName: Full=Leader peptidase; AltName: Full=Prepilin peptidase; Includes: RecName: Full=N-methyltransferase gi|3088559|gb|AAC23569.1| type IV prepilin peptidase TapD [Aeromonas salmonicida] gi|88866546|gb|ABD57323.1| TapD [Aeromonas salmonicida subsp. salmonicida A449] gi|142850270|gb|ABO88591.1| type IV prepilin peptidase TapD [Aeromonas salmonicida subsp. salmonicida A449] Length = 291 Score = 37.2 bits (85), Expect = 0.99, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + LV DL ++P+++++ ++ G L + + + G +V Sbjct: 139 LLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGYVPLGDAVIGAMAGYLVLWS 198 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W GW + L +++G I + ++ +R Sbjct: 199 LYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPI-VLLLSSLVGAIFGIGLILLRNHH 257 Query: 128 NHIPIF 133 PI Sbjct: 258 QSKPIP 263 >gi|16800653|ref|NP_470921.1| hypothetical protein lin1585 [Listeria innocua Clip11262] gi|16414072|emb|CAC96816.1| comC [Listeria innocua Clip11262] Length = 236 Score = 37.2 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 2/109 (1%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 L F ++D+ +PN V I+ L + L+ +++ F F Sbjct: 107 LAFFFVTDILYLHVPNSVMILFFLVLLTCYISFQQPAVSLIYSSLISNCFYLLFFILFRK 166 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 +G GD+K+L + + G+ ++ F + +LG I+ + L ++ + Sbjct: 167 G-IGLGDIKILIILSSFLGFEMGYIVFFLSI-VLGAIILLSALVLKKVE 213 >gi|225386961|ref|ZP_03756725.1| hypothetical protein CLOSTASPAR_00711 [Clostridium asparagiforme DSM 15981] gi|225046973|gb|EEG57219.1| hypothetical protein CLOSTASPAR_00711 [Clostridium asparagiforme DSM 15981] Length = 209 Score = 37.2 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 51/169 (30%), Gaps = 36/169 (21%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL------- 66 I L A D + IPN ++++ L ++ + GM + V Sbjct: 6 IFMIYLAVCAGWDGRTRRIPNGLTVLGLAGGVMMVGMQGMWTAAGLHGVGVAAGLHGAEA 65 Query: 67 ----------------------------IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW 98 I C + F ++G GDVKL W G+ Sbjct: 66 ADGLQGVQTATAVQAWAFAAMAAFGRAVIAVAAGMCLYRFRVIGAGDVKLAAVIVAWLGF 125 Query: 99 TPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKI 147 +F LG + S+ L R I + + +L KI Sbjct: 126 AEGGAG-IFAGLCLGAVWSLGRLARRRILWKRFSYLAGYVRDYLATGKI 173 >gi|66044051|ref|YP_233892.1| prepilin peptidase [Pseudomonas syringae pv. syringae B728a] gi|63254758|gb|AAY35854.1| Prepilin peptidase [Pseudomonas syringae pv. syringae B728a] Length = 290 Score = 37.2 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%) Query: 45 LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100 ++ AF L + G + F F MG GD KLL W GW Sbjct: 169 IVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQV 228 Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 L+ + +++G +L V ++ VR + + PI Sbjct: 229 LPLT-ILLSSLVGAVLGVIMMRVRRVESGTPIP 260 >gi|330960770|gb|EGH61030.1| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. maculicola str. ES4326] Length = 290 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPN-RVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + L+ +L D ++P+ V ++ ++ +F L + G Sbjct: 131 QAAAMLVLSWGLLAMSLIDTDHQLLPDSLVLPLLWLGLIVNSFRLFTSLSDALWGAVAGY 190 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + + F MG GD KLL W GW L+ + +++G +L V ++ Sbjct: 191 LTLWSVYWLFKLITGKEGMGHGDFKLLAMLGAWGGWQILPLT-ILLSSLVGAVLGVIMMR 249 Query: 123 VRMITNHIPIF 133 +R + + PI Sbjct: 250 IRRVESGTPIP 260 >gi|229160357|ref|ZP_04288355.1| Peptidase A24A domain protein [Bacillus cereus R309803] gi|228623081|gb|EEK79909.1| Peptidase A24A domain protein [Bacillus cereus R309803] Length = 249 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 22/138 (15%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF--NIM 81 ++DL +IPNR I++ +FL+T + + ++ I+FI+ +C + Sbjct: 122 VTDLVYMLIPNR--ILIWFAFLITLECIFVPLVTWIDSIVGSGIIFILLYCVRRIYPEGL 179 Query: 82 GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM-FVPKS 140 GGGD+KLL S L F+ G+ +FI+ + FG+ K Sbjct: 180 GGGDIKLL-----------SLLGFIV------GVKGIFIILFLASCFSLCFFGIGIALKR 222 Query: 141 FLMKNKIPYGIAISMGGL 158 + IP+G IS+G + Sbjct: 223 IEARKPIPFGPFISLGAI 240 >gi|46907779|ref|YP_014168.1| type IV leader peptidase family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47093085|ref|ZP_00230862.1| type IV leader peptidase family protein [Listeria monocytogenes str. 4b H7858] gi|226224151|ref|YP_002758258.1| late competence protein ComC (type IV prepilin peptidase) [Listeria monocytogenes Clip81459] gi|254824391|ref|ZP_05229392.1| type IV leader peptidase [Listeria monocytogenes FSL J1-194] gi|254931490|ref|ZP_05264849.1| type IV leader peptidase [Listeria monocytogenes HPB2262] gi|46881048|gb|AAT04345.1| type IV leader peptidase family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47018525|gb|EAL09281.1| type IV leader peptidase family protein [Listeria monocytogenes str. 4b H7858] gi|225876613|emb|CAS05322.1| Putative late competence protein ComC (type IV prepilin peptidase) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583042|gb|EFF95074.1| type IV leader peptidase [Listeria monocytogenes HPB2262] gi|293593626|gb|EFG01387.1| type IV leader peptidase [Listeria monocytogenes FSL J1-194] gi|332311992|gb|EGJ25087.1| Type IV leader peptidase family protein [Listeria monocytogenes str. Scott A] Length = 236 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 ++ I F L F ++D+F +PN + IV + A L ++ + + Sbjct: 98 LLYYIIYFFLAFFFITDIFYLYVPNSILIVFFCVLAIIAILYNQTLMDFIFSGVISCLFY 157 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108 ++ F F +G GD+K+L + + G+ + F Sbjct: 158 LLFFIIFRKG-IGLGDIKILIILSTFLGFKIGYYIFFLA 195 >gi|167031636|ref|YP_001666867.1| peptidase A24A prepilin type IV [Pseudomonas putida GB-1] gi|166858124|gb|ABY96531.1| peptidase A24A prepilin type IV [Pseudomonas putida GB-1] Length = 156 Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 13/148 (8%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELIALHLLVGLIVFI 70 ++ L + D+ I N +++ + L+ F G + + IV + Sbjct: 4 IVLLLWLALCSEQDVRQRQISNLLTLGVATCALIWLFATGHSWIGADASDAGWALAIVML 63 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + + G DVKL+ + A+ ++ I G+ + L R + Sbjct: 64 LTLPGYMLGRFGADDVKLMGALALATSPQ-----YVLGTFIGAGVSVLVWLLTRRRLWTL 118 Query: 131 P------IFGMFVPKSFLMKNKIPYGIA 152 + + +PY +A Sbjct: 119 LNPKVKKRLQALTEEMGDKQAFVPYVLA 146 >gi|312883953|ref|ZP_07743670.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio caribbenthicus ATCC BAA-2122] gi|309368411|gb|EFP95946.1| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio caribbenthicus ATCC BAA-2122] Length = 289 Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFI 70 LI + L+ DL + ++P+++++ ++ + + + + L + G + Sbjct: 134 LIFLYALITLLFIDLDTMLLPDQITLPLMWLGIALSLMEISPTSLQDSVLGAIFGYLSLW 193 Query: 71 ICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 + F MG GD KLL + W GW + +I+G +++ L ++ Sbjct: 194 SVYWMFKLATGKEGMGYGDFKLLAALGAWLGW-QYLPMIILCSSIVGVFMAIIQLALK 250 >gi|30248611|ref|NP_840681.1| prepilin cysteine protease (C20), type IV [Nitrosomonas europaea ATCC 19718] gi|30180206|emb|CAD84508.1| Prepilin cysteine protease (C20), type IV [Nitrosomonas europaea ATCC 19718] Length = 286 Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 61/154 (39%), Gaps = 21/154 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71 L+ + ++ DL + ++P+ ++ +L + L+ G D + + G + Sbjct: 135 LVFVWAMIVLTFIDLNTQLLPDSITQPLLWTGLIVNLNNGFTDVHSAVVGAVAGYLTLWS 194 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W GW L + F +++G ++ ++ Sbjct: 195 VYWLFRLLTGKEGMGYGDFKLLAAIGAWLGWQLLPL-VILFSSVVGAVVGTVLI------ 247 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + +P+G ++ GGLI+ Sbjct: 248 ---------LSAGHSKNMTLPFGPYLAGGGLIAL 272 >gi|323486493|ref|ZP_08091816.1| hypothetical protein HMPREF9474_03567 [Clostridium symbiosum WAL-14163] gi|323400196|gb|EGA92571.1| hypothetical protein HMPREF9474_03567 [Clostridium symbiosum WAL-14163] Length = 180 Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 8/139 (5%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL--------IALHLLVGLIVFI 70 L +AL D +PN + + +F + F+ G IAL + I Sbjct: 10 LTGSALCDFRKGRVPNVLILFGTAAFGIAGFIRGPSPGDGSGAVFTVIALFFIRTFFTVI 69 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 I F F F +MG GD+K++ A + G + +A ++L ++ I Sbjct: 70 IFFPLFLFRMMGAGDIKVMAVIAGYMGMDRGVEIIFYGLAAAAVWSLFYMLKQHILAERI 129 Query: 131 PIFGMFVPKSFLMKNKIPY 149 F ++ F + +PY Sbjct: 130 KYFLNYIKHLFQSEQILPY 148 >gi|146297619|ref|YP_001181390.1| peptidase A24A, prepilin type IV [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411195|gb|ABP68199.1| peptidase A24A, prepilin type IV [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 147 Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 4/103 (3%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M +L+ + A +D S +IPN I +L + + + +D HL + Sbjct: 1 MTIWIAYLVGCITCCWTAYTDYKSRIIPN---IAVLINIIAAILIFRIDLIKNG-HLWLA 56 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108 L +F + F + F ++G GDVKLL S + G+ F Sbjct: 57 LSLFAVMFIMWLFKLIGAGDVKLLFSLTLLLGYNAYIAIFFTL 99 >gi|186683080|ref|YP_001866276.1| peptidase A24A domain-containing protein [Nostoc punctiforme PCC 73102] gi|186465532|gb|ACC81333.1| peptidase A24A domain protein PilD [Nostoc punctiforme PCC 73102] Length = 296 Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 24/166 (14%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF--- 75 L+ +L DL + +PN ++ L + +L ++G E ++ L+ L++ I+ Sbjct: 114 LLALSLIDLDTMTLPNPLTQSGLVAGILFQMVVGYLSEGSSVALVNHLMIAILGAVLGLW 173 Query: 76 ------------FAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 F MG GD KL W GW L+ A+ G ++ I+ Sbjct: 174 LFDAIALLGSIAFGKTAMGAGDAKLAAMMGAWLGWKYLLLATFIACAL-GALIGSAIIMH 232 Query: 124 RMITNHIPIFGMFVPK--------SFLMKNKIPYGIAISMGGLISY 161 + I + + + K+P+G +++G LI+ Sbjct: 233 KRILLGRSKLRTASGREATNEQTSTHRLGQKMPFGPFLALGSLITL 278 >gi|257095697|ref|YP_003169338.1| prepilin peptidase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048221|gb|ACV37409.1| Prepilin peptidase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 286 Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGL 66 +A ++ +CL+ DL + ++P+ +++ +L L F D + G Sbjct: 130 AAAGAMLLIWCLIALTCIDLDTLLLPDSITLPLLWAGLLFNLFGTFADLHSAVIGAASGY 189 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + + + F MG GD KLL + WFGW L+ + ++LG ++ + ++ Sbjct: 190 LSLWLVYWGFKLTTGKEGMGYGDFKLLAALGAWFGWQMLPLT-ILLSSLLGAVVGIAMIV 248 Query: 123 VRMITNHIPIF 133 V +PI Sbjct: 249 VAKRGRSVPIP 259 >gi|228984479|ref|ZP_04144656.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775182|gb|EEM23571.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 249 Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 4/116 (3%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + ++ + + + C +GG Sbjct: 122 VTDYIYMLIPNRILAWFACLLILECAFVPLVTWTDSIVGSCVIFILLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135 GDVKLL+ G F+ G L + + +R P + Sbjct: 182 GDVKLLSLLGFIMGLKGIFMIIFLASFFSLCFFGAGLVLKRMKMRTQIPFGPFISL 237 >gi|229154972|ref|ZP_04283086.1| Peptidase A24A domain protein [Bacillus cereus ATCC 4342] gi|228628530|gb|EEK85243.1| Peptidase A24A domain protein [Bacillus cereus ATCC 4342] Length = 249 Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 4/116 (3%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + ++ + + + C +GG Sbjct: 122 VTDYIYMLIPNRILAWFACLLILECAFVPLVTWTDSIVGSCVIFILLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135 GDVKLL+ G F+ G L + + +R P + Sbjct: 182 GDVKLLSLLGFIMGLKGIFMIIFLASFFSLCFFGAGLVLKRMKMRTQIPFGPFISL 237 >gi|167628384|ref|YP_001678883.1| peptidase a24a, prepilin type iv peptidase [Heliobacterium modesticaldum Ice1] gi|167591124|gb|ABZ82872.1| peptidase a24a, prepilin type iv peptidase [Heliobacterium modesticaldum Ice1] Length = 255 Score = 36.8 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 23/149 (15%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLL-------TAFLLGMDYELIALHLLVGLIVFIIC 72 + A+ DL +IPNRV + L T G+ L +L V + Sbjct: 107 IVIAVIDLQHKIIPNRVLGAAFVAIALRQAGKVWTGQDGGLALLLDSLAGGVFGAALLFA 166 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 +F+ +G GDVK + GW P L + A+ G ++ + + Sbjct: 167 VFWFSKGGLGLGDVKFAFVFGLLLGW-PGALWAITLSALCGSVVGLAGIASGR------- 218 Query: 133 FGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + K++IP+G ++ G Y Sbjct: 219 --------WTGKSQIPFGPFLAFGYFTVY 239 >gi|271501345|ref|YP_003334370.1| Prepilin peptidase [Dickeya dadantii Ech586] gi|270344900|gb|ACZ77665.1| Prepilin peptidase [Dickeya dadantii Ech586] Length = 283 Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 52/136 (38%), Gaps = 7/136 (5%) Query: 3 ESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALH 61 + M L L A + D + ++P+ +++ +L L + E + Sbjct: 127 QPGMALLGALLCISMLLALA-VIDARTQLLPDVMTLPLLWCGLLFNLADTFVPLEQAVIG 185 Query: 62 LLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117 + G + + + F +G GD KLL + W GW + + + ++ G + + Sbjct: 186 AMAGYLSLWLIYWGFRLLSGREALGYGDFKLLAALGAWLGW-QALPNLVLIASLTGLVAT 244 Query: 118 VFILTVRMITNHIPIF 133 + +R I P+ Sbjct: 245 LLWRRIRRINMQQPLA 260 >gi|332976660|gb|EGK13500.1| leader peptidase (prepilin peptidase)/N-methyltransferase [Psychrobacter sp. 1501(2011)] Length = 301 Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 8/137 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVG 65 + + + LI + LV A D S +P++++ + + + + + LL+G Sbjct: 146 LQAVIALIFVWTLVGLAGIDWISQYLPDKLTFPLAALGLAINSEAIFVTPTQSIWGLLLG 205 Query: 66 LIVF----IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF-LFFVAILGGILSVFI 120 + + + F MG GD KLL W G P L F + ++LG I+ + + Sbjct: 206 YLSLWTVVKVFYIFTKKQGMGQGDFKLLAVIGAWLG--PMMLPFVILLSSLLGSIIGIIL 263 Query: 121 LTVRMITNHIPIFGMFV 137 + R + Sbjct: 264 MHHRAESRPFAFGPYLA 280 >gi|325273278|ref|ZP_08139556.1| prepilin peptidase [Pseudomonas sp. TJI-51] gi|324101609|gb|EGB99177.1| prepilin peptidase [Pseudomonas sp. TJI-51] Length = 283 Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGL 66 + + L +CL+ +L D ++P+ + + ++ ++ AF + + + G Sbjct: 125 EALLALPLTWCLLALSLIDADHQLLPDVLVLPMLWLGLIVNAFAVYVPLGSAVWGAVAGY 184 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + + F MG GD KL+ W GW L+ L +++G ++ + +L Sbjct: 185 LCLWSVYWLFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLL-SSVVGALVGLCLLH 243 Query: 123 VRMITNHIPIF 133 + + Sbjct: 244 LHRHALGAAMP 254 >gi|89901675|ref|YP_524146.1| prepilin peptidase [Rhodoferax ferrireducens T118] gi|89346412|gb|ABD70615.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Rhodoferax ferrireducens T118] Length = 280 Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL--LGMDYELIALHLLVGL 66 + V+ ++ D + ++P+ +++ +L + L+ A L + + G Sbjct: 125 ALVWCGFGATMLALGCIDWDTTLLPDDITLPLLWAGLIAAALQWTPVALPEALWGAVAGY 184 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 + + + F MG GD KL + WFGW + + + +++G ++ + + Sbjct: 185 VSLWLVYWAFKLVTGKEGMGFGDFKLFAALGAWFGW-QALVPIILMASVIGAVIGIAM 241 >gi|62181946|ref|YP_218363.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129579|gb|AAX67282.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716433|gb|EFZ08004.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 197 Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 11/135 (8%) Query: 10 AVFLIPPFCLVFAALS------DLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHL 62 +F+ PF + +A+ S D + ++P+R ++ G L L Sbjct: 42 LMFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGA 101 Query: 63 LVGLIVFIICFCFFAFNI----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 + G F + + + +G GDVK L + W W L + G V Sbjct: 102 IAGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGV 161 Query: 119 FILTVRMITNHIPIF 133 +L P+ Sbjct: 162 ALLVRGKSALINPLP 176 >gi|20093290|ref|NP_619365.1| hypothetical protein MA4505 [Methanosarcina acetivorans C2A] gi|19918646|gb|AAM07845.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 264 Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 8/138 (5%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRV---SIVMLGSFLLTAFLLGMDYELIALHL 62 M+ L++++ DL + +PNR+ + L FL+ + G ++ L + Sbjct: 1 MIEVLKLAACLPFLLYSSYLDLETRRVPNRIWKLMLFSLSGFLIYEIVEGGILFMLQL-V 59 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG----GILSV 118 F + + F + GG D K L P + + +LG G+ S+ Sbjct: 60 FSFFSSFFLAYLLFRLRVFGGADAKALIVIGTLVPVYPVLDFYGYTFPLLGFPPVGLFSL 119 Query: 119 FILTVRMITNHIPIFGMF 136 +L ++ I G+F Sbjct: 120 TVLENSVLLTAIIPLGIF 137 >gi|50122021|ref|YP_051188.1| type 4 prepilin-like proteins leader peptide processing enzyme [Pectobacterium atrosepticum SCRI1043] gi|49612547|emb|CAG75997.1| type 4 prepilin-like proteins leader peptide processing enzyme [Pectobacterium atrosepticum SCRI1043] Length = 282 Score = 36.8 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 6/115 (5%) Query: 24 LSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN--- 79 + D+ + ++P+ +++ +L L + + + G + + + F + Sbjct: 149 VIDIKTLLLPDVLTLSLLWVGLLFNLSETFVPVGDAVVGAMAGYLSLWLLYWVFKYATGK 208 Query: 80 -IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 +G GD KLL + W GW + + + A+ G ++++ +R P+ Sbjct: 209 EALGYGDFKLLAALGAWLGW-QALPNLVLVAALSGLVVTLVWRGLRKEDTAKPLA 262 >gi|206977561|ref|ZP_03238455.1| late competence protein comC [Bacillus cereus H3081.97] gi|222095039|ref|YP_002529099.1| late competence protein comc [Bacillus cereus Q1] gi|206744279|gb|EDZ55692.1| late competence protein comC [Bacillus cereus H3081.97] gi|221239097|gb|ACM11807.1| late competence protein comC [Bacillus cereus Q1] Length = 240 Score = 36.8 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 4/129 (3%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 + L L+ +++D +IPNR+ +L + + + ++ + + + Sbjct: 100 IVLSLFALLLIISVTDYIYMLIPNRILAWFACLLILECAFIPLVTWIDSIVGSCVIFILL 159 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMI 126 C +GGGD+KLL+ G F+ G L + + +R Sbjct: 160 YCMQKIYPEGLGGGDIKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKRMKMRTQ 219 Query: 127 TNHIPIFGM 135 P + Sbjct: 220 IPFGPFISL 228 >gi|323694366|ref|ZP_08108539.1| hypothetical protein HMPREF9475_03403 [Clostridium symbiosum WAL-14673] gi|323501606|gb|EGB17495.1| hypothetical protein HMPREF9475_03403 [Clostridium symbiosum WAL-14673] Length = 180 Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 8/139 (5%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL--------IALHLLVGLIVFI 70 L +AL D +PN + + +F + F+ G IAL + I Sbjct: 10 LTGSALCDFRKGRVPNVLILFGTAAFGIAGFIRGPSPGDGSGAVFTVIALFFIRTFFTVI 69 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 I F F F +MG GD+K++ A + G + +A ++L ++ I Sbjct: 70 IFFPLFLFRMMGAGDIKVMAVIAGYMGMDRGVEIIFYGLAAAAVWSLFYMLKQHILAERI 129 Query: 131 PIFGMFVPKSFLMKNKIPY 149 F ++ F + +PY Sbjct: 130 KYFLNYIKHLFQSEQILPY 148 >gi|89068026|ref|ZP_01155443.1| hypothetical protein OG2516_07592 [Oceanicola granulosus HTCC2516] gi|89046265|gb|EAR52322.1| hypothetical protein OG2516_07592 [Oceanicola granulosus HTCC2516] Length = 161 Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 1/134 (0%) Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80 + A +DL I N +L F + ++ + +V ++ +A + Sbjct: 20 YVAWTDLARMKITNVAVGALLVVFAVVGAMV-LPLPDYLWRWAHFALVLVVALALYAGGL 78 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140 GGGD K L + A + + + + L + Sbjct: 79 FGGGDAKFLAAAAPYVALADLSSMLILLSGFMLAAYAAHRLARASALRRLAPGWESWTSG 138 Query: 141 FLMKNKIPYGIAIS 154 +P+G A++ Sbjct: 139 RRFPMGLPFGGALA 152 >gi|269118883|ref|YP_003307060.1| peptidase A24A domain protein [Sebaldella termitidis ATCC 33386] gi|268612761|gb|ACZ07129.1| peptidase A24A domain protein [Sebaldella termitidis ATCC 33386] Length = 239 Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 4/114 (3%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLVGLIVFIICFCF 75 L+ A+ D+ + +IP+R I++L + L + L + L A + +++ F Sbjct: 104 ILLAASFIDIETHIIPDRFFIILLITGFLYSVLRNNPENWFLGAASYGLPVLLLYSASDF 163 Query: 76 FAFNIMGGGDVKLLTSTA--VWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 I+G GDVKL+ + + + + L F + I GI S F++ R T Sbjct: 164 INKEIIGFGDVKLICAAGGFISYSGLKNLLWFYEILYISAGIFSFFLIFFRKRT 217 >gi|157362877|ref|YP_001469644.1| peptidase A24A domain-containing protein [Thermotoga lettingae TMO] gi|157313481|gb|ABV32580.1| peptidase A24A domain protein [Thermotoga lettingae TMO] Length = 240 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 3/116 (2%) Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63 S + I ++ +L DL +IP+ +++ + + G EL+ L + Sbjct: 94 SNFLEFIALSIILSSVIVLSLIDLQFMLIPDITLLLIGAGSFVLWIVRG--AELLNLVAV 151 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 + V +I MG GD+ L+ + ++ G T S S L F ++ G I ++ Sbjct: 152 GLVTVLLIVLSLLYKGGMGSGDILLMAAMSLSLGITGSLYS-LVFASLSGIIYALI 206 >gi|47096714|ref|ZP_00234299.1| type IV leader peptidase family protein [Listeria monocytogenes str. 1/2a F6854] gi|254898283|ref|ZP_05258207.1| hypothetical protein LmonJ_00670 [Listeria monocytogenes J0161] gi|254912224|ref|ZP_05262236.1| type IV leader peptidase family protein [Listeria monocytogenes J2818] gi|254936552|ref|ZP_05268249.1| type IV leader peptidase [Listeria monocytogenes F6900] gi|47014898|gb|EAL05846.1| type IV leader peptidase family protein [Listeria monocytogenes str. 1/2a F6854] gi|258609146|gb|EEW21754.1| type IV leader peptidase [Listeria monocytogenes F6900] gi|293590198|gb|EFF98532.1| type IV leader peptidase family protein [Listeria monocytogenes J2818] Length = 236 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 2/117 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 ++ I + L F ++D+F +PN + IV + A L + + + + Sbjct: 98 LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLAIIATLYNQTLMALIYSGGISCLFY 157 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 ++ F F +G GD+K+L + + G+ + F + I+G I+ + L ++ + Sbjct: 158 LLFFIIFRKG-IGLGDIKILIILSTFLGFKIGYYIFFLAI-IMGTIILLTALMLKKV 212 >gi|85860185|ref|YP_462387.1| type 4 prepilin-like proteins leader peptide processing enzyme [Syntrophus aciditrophicus SB] gi|85723276|gb|ABC78219.1| type 4 prepilin-like proteins leader peptide processing enzyme [Syntrophus aciditrophicus SB] Length = 258 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 I L+ D+ +IP+ +S+ + FL+ F++ + + L LL+G + Sbjct: 107 IFVSALILITFIDIDYQIIPDVISLPGIPICFLMAVFIMDLSFMDALLGLLIGGGSLYLV 166 Query: 73 FCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 + MGGGD+KLL + GW S L L +++G ++ + I+ R Sbjct: 167 AVLYELATKREGMGGGDIKLLALMGAFLGW-KSLLFILLVSSLVGAVVGISIMLARGGDM 225 Query: 129 HIPIF 133 + Sbjct: 226 KYAVP 230 >gi|71082774|ref|YP_265493.1| type II secretion PilD [Candidatus Pelagibacter ubique HTCC1062] gi|71061887|gb|AAZ20890.1| Type II Secretion PilD [Candidatus Pelagibacter ubique HTCC1062] Length = 254 Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 12/123 (9%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLL 63 + + +F I C V DL +IPN ++ ++ LL +F ++ + + L+ Sbjct: 95 LTTLLFFILSICFVIIFFIDLKHFIIPNELTYPLMIIGLLKSFDPNLNTTLFPNLVNSLI 154 Query: 64 VGLIVFIICFCFFAF-------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116 GL +II + MG GD KLL+ WFGW + + F+ F + + +L Sbjct: 155 GGLFGYIIIWLIIFIYKKLRNKEGMGLGDAKLLSVIGFWFGW--ASIPFVIFFSSVIALL 212 Query: 117 SVF 119 SV Sbjct: 213 SVV 215 >gi|266621099|ref|ZP_06114034.1| peptidase A24A, prepilin type IV [Clostridium hathewayi DSM 13479] gi|288867255|gb|EFC99553.1| peptidase A24A, prepilin type IV [Clostridium hathewayi DSM 13479] Length = 174 Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 7/97 (7%) Query: 13 LIPPFCLVFAALSDLFSAMIPNR-VSIVMLGSFLLTAFLLGMD------YELIALHLLVG 65 +I L A D+ IPN V++ + LL+ G + L L Sbjct: 1 MILLLVLAAGAYYDVREHRIPNWWVAVSAVCGILLSMVESGAPPGPAAYLKECGLFLARM 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102 L V + F F ++G GD+KL + G+ Sbjct: 61 LTVSALFFPLFICRMIGAGDIKLAALICGYSGFAGGA 97 >gi|47566191|ref|ZP_00237219.1| prepilin peptidase, type IV [Bacillus cereus G9241] gi|47556744|gb|EAL15075.1| prepilin peptidase, type IV [Bacillus cereus G9241] Length = 240 Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 4/116 (3%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + ++ + + + C +GG Sbjct: 113 VTDYIYMLIPNRILAWFACLLILECAFVPLVTWTDSIVGSCVIFILLYCMQKIYPEGLGG 172 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135 GDVKLL+ G F+ G L + + +R P + Sbjct: 173 GDVKLLSLLGFIMGLKGIFMIIFLASFFSLCFFGAGLVLKRMKMRTQIPFGPFISL 228 >gi|45358118|ref|NP_987675.1| preflagellin peptidase [Methanococcus maripaludis S2] gi|18042217|gb|AAL57886.1|AF455758_1 flagella related protein FlaK [Methanococcus maripaludis] gi|44920875|emb|CAF30111.1| Preflagellin peptidase [Methanococcus maripaludis S2] Length = 230 Score = 36.4 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL---HLLVGLIV 68 ++I L+ A++ D S I + + IV+ +L A + ++ + +I Sbjct: 4 YIIGVIGLLLASVQDFRSREIEDYIWIVLAVFGILFAIYSAITLSNYSILINSISGFVIC 63 Query: 69 FIICFCFFAFNIMGGGDVKLL 89 FI+ + F +GGGD K+L Sbjct: 64 FILGYMMFLSG-IGGGDGKIL 83 >gi|267995651|gb|ACY90536.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|323131800|gb|ADX19230.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 197 Score = 36.4 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 11/135 (8%) Query: 10 AVFLIPPFCLVFAALS------DLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHL 62 +F+ PF + +A+ S D + ++P+R ++ G L L Sbjct: 42 LMFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGA 101 Query: 63 LVGLIVFIICFCFFAFNI----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 + G F + + + +G GDVK L + W W L + G V Sbjct: 102 IAGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGV 161 Query: 119 FILTVRMITNHIPIF 133 +L P+ Sbjct: 162 ALLVRGKSALINPLP 176 >gi|239624660|ref|ZP_04667691.1| peptidase A24A domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239521046|gb|EEQ60912.1| peptidase A24A domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 252 Score = 36.4 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 32/90 (35%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 + + + L AL D IP+ +S+ +L + + + V Sbjct: 99 EAVIMCLFGSLLTVGALIDARHMYIPDGISLSILVLAAGSLMIAPRPGLAGRIAGAVICG 158 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFG 97 F+ +G GD KL+ S+ + G Sbjct: 159 GFLALLRVLTKGGIGLGDAKLMASSGLLLG 188 >gi|90416349|ref|ZP_01224281.1| type 4 prepilin-like proteins leader peptide processing enzyme [marine gamma proteobacterium HTCC2207] gi|90332074|gb|EAS47288.1| type 4 prepilin-like proteins leader peptide processing enzyme [marine gamma proteobacterium HTCC2207] Length = 299 Score = 36.4 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 6/132 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVG 65 + +A L+ + L+ D ++P+++++ +L + + L G Sbjct: 140 LMAAYCLMFTWVLIALTGIDFREQLLPDQITLPLLWLGLFANLNGTFVPLNEAVVGALAG 199 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + F F MG GD KLL + W GW L + +G ++ V L Sbjct: 200 YLSLWSVFWLFKLITGKEGMGYGDFKLLAALGAWMGWQMLPL-IIILSTFVGALVGVAGL 258 Query: 122 TVRMITNHIPIF 133 + +P+ Sbjct: 259 LMNTRERQVPMA 270 >gi|171463003|ref|YP_001797116.1| peptidase A24A prepilin type IV [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192541|gb|ACB43502.1| peptidase A24A prepilin type IV [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 166 Score = 36.4 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 9/111 (8%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 LV+ A DL + +P+ +++ ++ + LL L + + ++ + + Sbjct: 16 MVLVYLAYFDLRTFRLPDAITLPLILAALLFNGLSKDGFISFQDSIAGAILGYASLWLLN 75 Query: 77 AF-------NIMGGGDVKLLTSTAVWFGW--TPSFLSFLFFVAILGGILSV 118 +G GD KLL + W GW PS L ++GG++ + Sbjct: 76 FLYRILKKEGGIGMGDAKLLAALGAWLGWFALPSILLLASITGLIGGLIWL 126 >gi|198282505|ref|YP_002218826.1| peptidase A24A domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665857|ref|YP_002424695.1| type IV pilus prepilin peptidase PilD [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247026|gb|ACH82619.1| peptidase A24A domain protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518070|gb|ACK78656.1| type IV pilus prepilin peptidase PilD [Acidithiobacillus ferrooxidans ATCC 23270] Length = 266 Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 12/133 (9%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVS-------IVMLGSFLLTAFLLGMDYELIALHLLVG 65 L+ + L+ + DL + ++P+R++ +++ GS L L + L +++G Sbjct: 108 LVFTWALLALTMIDLETQLLPDRLTKPGMLAGLLLNGSALFWPGLALVTPLDALLGMIIG 167 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + + MGGGD+KLL W GW FL+ LF A+ GG++++ L Sbjct: 168 YGSLWLLATVYYRIAGRHGMGGGDLKLLGMIGAWLGWQAVFLT-LFIAALGGGLVALGFL 226 Query: 122 TVRMITNHIPIFG 134 ++ FG Sbjct: 227 LGGKGRDYAMPFG 239 >gi|121534458|ref|ZP_01666281.1| peptidase A24A domain protein [Thermosinus carboxydivorans Nor1] gi|121306951|gb|EAX47870.1| peptidase A24A domain protein [Thermosinus carboxydivorans Nor1] Length = 249 Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 1/113 (0%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 LI L+ A D +I ++V I + G+ + LG + + ++ Sbjct: 101 LIFISFLIVVAFIDYDHQLILDKVLIWLGGAGVFINLGLGFTGLTDMIAGSLLGGGLLLV 160 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + MGGGD+K +W GW L LF +LGG+ + +LT++ Sbjct: 161 IAIASRGGMGGGDIKFAACLGLWLGW-KLTLLALFLSFLLGGVGGIVLLTLKR 212 >gi|218779098|ref|YP_002430416.1| peptidase A24A domain protein [Desulfatibacillum alkenivorans AK-01] gi|218760482|gb|ACL02948.1| Peptidase A24A domain protein (type IV prepilin-like leader peptidase (prepilin FT peptidase / N-methyltransferase) [Desulfatibacillum alkenivorans AK-01] Length = 266 Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 20/157 (12%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGL 66 + V+ + L+ DL +IPN +++ + + L + + + VG Sbjct: 105 AALVYYLLIATLLVITFIDLDHMIIPNIITLPGIPIGIAASFLLPELSLAQSLIGVAVGG 164 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 F MG GDVKLL +FG + + A +G + + ++ Sbjct: 165 GGLFAVSELFYLLRKKEGMGMGDVKLLGMLGAFFGVKGVLFT-IMAGAFVGTFVGLILI- 222 Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 + +S + +IP+G ++ G ++ Sbjct: 223 -------------PLNRSKGLDLRIPFGPFLASGAIV 246 >gi|325981147|ref|YP_004293549.1| prepilin peptidase [Nitrosomonas sp. AL212] gi|325530666|gb|ADZ25387.1| Prepilin peptidase [Nitrosomonas sp. AL212] Length = 287 Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 21/160 (13%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65 + + LI + L+ + DL + ++P+ +++ +L LL D + + VG Sbjct: 130 LITIAALIFVWALITLTVIDLNTQLLPDDITLPLLWLGLLVNINNSFTDIQSAVIGAAVG 189 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL++ W GW+ L + F +++G I+ + ++ Sbjct: 190 YLSLWSIYWCFKLITGKEGMGFGDFKLLSAIGAWLGWSMLPL-VILFSSLVGAIVGIGMI 248 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + +IP IP+G ++ G LI+ Sbjct: 249 VAAKLNKNIP---------------IPFGPYLAGGALIAL 273 >gi|307265050|ref|ZP_07546611.1| peptidase A24A prepilin type IV [Thermoanaerobacter wiegelii Rt8.B1] gi|306920035|gb|EFN50248.1| peptidase A24A prepilin type IV [Thermoanaerobacter wiegelii Rt8.B1] Length = 130 Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 4/123 (3%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L FAA D+ + +L + FL Y + +L L+VF + Sbjct: 4 IVILIILFFAAAEDIKKMEVGYIYPTSILILSFVNFFLK--PYMSLKFYLFNSLLVFAVL 61 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F F+ +GGGDVK+LT+ + + G+ L F +I+ + S+ + + IP Sbjct: 62 FLFWLLGGIGGGDVKVLTTLSFYAGFK--IWVILLFSSIIFLVYSLILRKFKTRLPFIPA 119 Query: 133 FGM 135 + Sbjct: 120 VAI 122 >gi|1170761|sp|P45794|LEP4_AERHY RecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; Includes: RecName: Full=Leader peptidase; AltName: Full=Prepilin peptidase; Includes: RecName: Full=N-methyltransferase gi|663118|gb|AAC43998.1| TapD [Aeromonas hydrophila] gi|1588985|prf||2209417D leader peptidase IV Length = 290 Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71 L+ + LV DL ++P+++++ +L LL L G + + G +V Sbjct: 138 LLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGYLVLWS 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W GW + L +++G + + ++ +R Sbjct: 198 LYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPI-VLLLSSLVGAFMGIGLILLRNHH 256 Query: 128 NHIPIF 133 PI Sbjct: 257 QSKPIP 262 >gi|310779614|ref|YP_003967947.1| peptidase A24A domain protein [Ilyobacter polytropus DSM 2926] gi|309748937|gb|ADO83599.1| peptidase A24A domain protein [Ilyobacter polytropus DSM 2926] Length = 245 Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 19/159 (11%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 +++A +I LV A+ D IP+R ++ +L +F G+ E + Sbjct: 96 IWTAELIIAASILVIASGIDWEHYYIPDRFTLGLLLLGYGFSFFNGVGIERSFMGSAAYG 155 Query: 67 IVFIICFC----FFAFNIMGGGDVKLLTSTAVWFGWTPSF-LSFLFFVAILGGILSVFIL 121 +F++ + F ++G GDVKL G+ + + + + G + L Sbjct: 156 FLFVMIYGYGERLFKKEVLGFGDVKLAAGIGSIVGYLGFYRMHLFITTSFVAGAVYGIYL 215 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 + K K ++P+G I+ GG+IS Sbjct: 216 I--------------ITKKKDRKAEVPFGPFIAFGGIIS 240 >gi|163939212|ref|YP_001644096.1| peptidase A24A domain-containing protein [Bacillus weihenstephanensis KBAB4] gi|163861409|gb|ABY42468.1| peptidase A24A domain protein [Bacillus weihenstephanensis KBAB4] Length = 249 Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++DL +IPN + I +L + + ++ + + + C +GG Sbjct: 122 VTDLVYMLIPNCILIWFALLLILECIFVPLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KLL+ G F+ I+ RM Sbjct: 182 GDIKLLSLLGFIVGLKGIFMILFLASCFSLCFFGAGIVLKRM----------------KK 225 Query: 144 KNKIPYGIAISMGGL 158 +++IP+G IS+G + Sbjct: 226 RSQIPFGPFISLGAI 240 >gi|87308904|ref|ZP_01091042.1| hypothetical protein DSM3645_19143 [Blastopirellula marina DSM 3645] gi|87288247|gb|EAQ80143.1| hypothetical protein DSM3645_19143 [Blastopirellula marina DSM 3645] Length = 178 Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 11/155 (7%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 ++ A DL S +PN +++ +L L + + G + + LL L+ Sbjct: 7 VAIILVALFTAIAFYVDLTSGKLPNWLTMPALLIGLLFQSAVNG--WGGLQHALLGALVG 64 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 F++ F F GGGDVK + + WFG L F A+L I+++ I +M+ Sbjct: 65 FVLLFILFIIGGGGGGDVKFMAALGAWFGPILILLVF-VASAVLALIITIAIFVGKMMFR 123 Query: 129 HIPIFGMFVP-------KSFLMKNKIPYGIAISMG 156 K + + IPYG+ + + Sbjct: 124 AKSDNAEPGETGDSTQKKLDIARQTIPYGVPVCLA 158 >gi|77456867|ref|YP_346372.1| peptidase A24A, prepilin type IV [Pseudomonas fluorescens Pf0-1] gi|77380870|gb|ABA72383.1| putative membrane protein [Pseudomonas fluorescens Pf0-1] Length = 156 Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 2/90 (2%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELIALHLLVGLIVFIICFCFF 76 L A D I N +++ + L+ + G + A L+ + + Sbjct: 10 LTLCAAQDARERHIGNGLTLGVGALALVWLLVTGSTWLGADAAQGGWAVLLALALTLPGY 69 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106 MGGGDVKL+T+ A+ +F+ Sbjct: 70 LLGRMGGGDVKLMTALALATDGQHLLGAFI 99 >gi|229138091|ref|ZP_04266689.1| Peptidase A24A domain protein [Bacillus cereus BDRD-ST26] gi|228645436|gb|EEL01670.1| Peptidase A24A domain protein [Bacillus cereus BDRD-ST26] Length = 249 Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 4/116 (3%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + + ++ + + + C +GG Sbjct: 122 VTDYIYMLIPNRILAWFACLLILECAFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135 GDVKLL+ G F+ G L + + +R P + Sbjct: 182 GDVKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKRMKMRTQIPFGPFISL 237 >gi|229029075|ref|ZP_04185174.1| Peptidase A24A domain protein [Bacillus cereus AH1271] gi|228732355|gb|EEL83238.1| Peptidase A24A domain protein [Bacillus cereus AH1271] Length = 249 Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ + + + ++ + + + C +GG Sbjct: 122 VTDYIYMLIPNRILAWFACLLIFECIFVPLVTWTDSIVGSGVIFILLHCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KLL+ G F+ V I+ RM M Sbjct: 182 GDIKLLSLLGFIAGLKGIFMILFLASCFSLCFFGVGIVLKRM----------------KM 225 Query: 144 KNKIPYGIAISMGGL 158 +++IP+G IS+G + Sbjct: 226 RSQIPFGPFISLGAI 240 >gi|313125036|ref|YP_004035300.1| leader peptidase family protein [Halogeometricum borinquense DSM 11551] gi|312291401|gb|ADQ65861.1| leader peptidase family protein [Halogeometricum borinquense DSM 11551] Length = 319 Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 9/102 (8%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPN--RVSIVMLGSFLLTA---FLLGMDYELIALHLLV 64 +I P L +AA D+ + +P+ +V LG LL L E I + V Sbjct: 9 LRLVIVPV-LGWAAWQDIETRRVPSVIWYPLVALGVVLLAWDTLPHLAFAPEDILYFVRV 67 Query: 65 GLIVFIIC---FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL 103 G+ + + + F+ GG D K L + ++ P +L Sbjct: 68 GISLLFVAPLSYIFWRLGGFGGADAKALITISILVPTFPQYL 109 >gi|65318672|ref|ZP_00391631.1| COG1989: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Bacillus anthracis str. A2012] gi|228926435|ref|ZP_04089507.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932686|ref|ZP_04095559.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945003|ref|ZP_04107364.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229120944|ref|ZP_04250186.1| Peptidase A24A domain protein [Bacillus cereus 95/8201] gi|228662604|gb|EEL18202.1| Peptidase A24A domain protein [Bacillus cereus 95/8201] gi|228814672|gb|EEM60932.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826944|gb|EEM72705.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833259|gb|EEM78824.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 249 Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + ++ + + + C +GG Sbjct: 122 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KLL+ I G IL + + V K M Sbjct: 182 GDIKLLSLLGF----------------IAGLKGVFMILFLSSFFSLCFFGAGLVLKRMKM 225 Query: 144 KNKIPYGIAISMGGL 158 + +IP+G IS+G + Sbjct: 226 RTQIPFGPFISLGAI 240 >gi|315618952|gb|EFU99535.1| type 4 prepilin-like proteins leader peptide-processing enzyme [Escherichia coli 3431] Length = 225 Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 9/140 (6%) Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLL 63 +V A+FL F L ++ D + ++P+++++ +L F+ A +D + Sbjct: 74 PIVTGALFLYFCFVLTL-SVIDFRTQLLPDKLTLPLLWLGFVFNAQYGLIDLHDAVYGAV 132 Query: 64 VGLIVFIICF----CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGI-LSV 118 G V + +G GD KLL + W GW L + +A LGGI ++ Sbjct: 133 AGYGVLWCVYWGVWLVCHKEGLGYGDFKLLAAAGAWCGW--QTLPMILLIASLGGIGYAI 190 Query: 119 FILTVRMITNHIPIFGMFVP 138 ++ T FG ++ Sbjct: 191 VSQLLQRRTITTIAFGPWLA 210 >gi|121603679|ref|YP_981008.1| prepilin peptidase [Polaromonas naphthalenivorans CJ2] gi|120592648|gb|ABM36087.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Polaromonas naphthalenivorans CJ2] Length = 283 Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 8/113 (7%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYELIALHLLVGLIVFII 71 L+ A+ D + ++P+ +++ +L + L+ A L + + G + + Sbjct: 133 FSAVLLALAMIDWDTTLLPDDMTLPLLWTGLIAAALQWNPAVSLSAALWGAVAGYLSLWL 192 Query: 72 CFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 + F MG GD KL + WFGW P+ + + +++G I+ + + Sbjct: 193 VYWAFKLATGKEGMGYGDFKLFAALGAWFGW-PALVPMILMASVIGAIIGIAM 244 >gi|332526518|ref|ZP_08402630.1| prepilin peptidase [Rubrivivax benzoatilyticus JA2] gi|332110786|gb|EGJ10963.1| prepilin peptidase [Rubrivivax benzoatilyticus JA2] Length = 316 Score = 36.0 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 60/143 (41%), Gaps = 23/143 (16%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF------- 78 D + ++P+ +++ +L + L+ A L + + +A + + ++ + + Sbjct: 176 DWDTTVLPDGMTLPLLWAGLVAAALGWLPGQTLADAIAGAAVGYLSLWSVYWLFKLATGK 235 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 MG GD KLL + W GW + + + +++G ++ + GM Sbjct: 236 EGMGYGDFKLLAALGAWLGW-QAIVPIVLMASVIGAVVGL---------------GMKAT 279 Query: 139 KSFLMKNKIPYGIAISMGGLISY 161 S +P+G ++ GGL+ Sbjct: 280 GSLREGRFVPFGPFLAGGGLVVL 302 >gi|167919052|ref|ZP_02506143.1| hypothetical protein BpseBC_10895 [Burkholderia pseudomallei BCC215] Length = 106 Score = 36.0 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ + L AL+DL + + ++ + A A H +G F + Sbjct: 7 LVASWTLASLALADLRTRRLATFAVALVGALYAAQALAGAPGDGGFASHAALGAAAFALG 66 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPS 101 F + GGDVKL +W G + Sbjct: 67 AAMFRAGWIAGGDVKLAAVVFLWAGPAHA 95 >gi|38233932|ref|NP_939699.1| hypothetical protein DIP1346 [Corynebacterium diphtheriae NCTC 13129] gi|38200193|emb|CAE49874.1| Putative membrane protein [Corynebacterium diphtheriae] Length = 168 Score = 36.0 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 7/105 (6%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC--FFAFNIMGG 83 D + +PNR ++ + A L + L G+ V F A +GG Sbjct: 35 DCTTRRLPNRYTLSAAACSFIWAVLT----QHFEWILYAGIWVLPYVFIGSLSAMRGIGG 90 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 GD+KL + + + + +I LS+ + + + Sbjct: 91 GDIKLSMALGI-VAAAHAGAQGVVVASICSSCLSIVLGLILRFLH 134 >gi|124265700|ref|YP_001019704.1| signal peptidase [Methylibium petroleiphilum PM1] gi|124258475|gb|ABM93469.1| signal peptidase [Methylibium petroleiphilum PM1] Length = 283 Score = 36.0 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 54/152 (35%), Gaps = 21/152 (13%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 L+ + D + ++P+ +++ +L + A + + G + + Sbjct: 134 FVAVLLALSGIDWDTTLLPDSLTLPLLWAGLVAAALGWTLPLSTSVWGAVFGYLSLWSVY 193 Query: 74 CFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 F MG GD KLL + W GW L + +++G I+ + Sbjct: 194 WLFKLTTGKEGMGAGDFKLLAALGAWLGW-QMLLPIVLGASLIGAIVGIA---------- 242 Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 M + + +P+G ++ GL+ Sbjct: 243 -----MKLAGALHEGRYVPFGPFLAGAGLVVL 269 >gi|167038592|ref|YP_001666170.1| peptidase A24A, prepilin type IV [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116980|ref|YP_004187139.1| peptidase A24A prepilin type IV [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857426|gb|ABY95834.1| peptidase A24A, prepilin type IV [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930071|gb|ADV80756.1| peptidase A24A prepilin type IV [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 131 Score = 36.0 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L FAA+ D+ + +L + L Y + LL L++FI+ Sbjct: 3 ILILLILFFAAVEDIKKMEVGYIYPASILILSFINVLLN--PYINLNFMLLNSLLIFIVL 60 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGW 98 F F+ +GGGDVK+LT+ A + G+ Sbjct: 61 FLFWLLGGIGGGDVKILTALAFYAGF 86 >gi|217423412|ref|ZP_03454913.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576] gi|217393270|gb|EEC33291.1| peptidase A24A, prepilin type IV [Burkholderia pseudomallei 576] Length = 135 Score = 36.0 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 1/93 (1%) Query: 57 LIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116 ++ L+ G + + F FFA +MG DVK+ W G P+ ++ G+ Sbjct: 22 TLSGALIGGAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGL-PALPRLWVVASVAAGVH 80 Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149 ++ ++ + G + + PY Sbjct: 81 ALALMLLTRTPPGSLGRGGAPAFALGARRAAPY 113 >gi|301052943|ref|YP_003791154.1| late competence protein [Bacillus anthracis CI] gi|300375112|gb|ADK04016.1| late competence protein [Bacillus cereus biovar anthracis str. CI] Length = 249 Score = 36.0 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + ++ + + + C +GG Sbjct: 122 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KLL+ I G IL + + V K M Sbjct: 182 GDIKLLSLLGF----------------IAGLKGVFMILFLSSFFSLCFFGAGLVLKRMKM 225 Query: 144 KNKIPYGIAISMGGL 158 + +IP+G IS+G + Sbjct: 226 RTQIPFGPFISLGAI 240 >gi|224824210|ref|ZP_03697318.1| peptidase A24A prepilin type IV [Lutiella nitroferrum 2002] gi|224603629|gb|EEG09804.1| peptidase A24A prepilin type IV [Lutiella nitroferrum 2002] Length = 183 Score = 36.0 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D + IPN++ + L L L L+ +GL F++ + MG Sbjct: 27 ITDTAARKIPNKLVLGGLAVAFLCQGLFFGGSGLLDGAKGMGLG-FVLFLPLYLLRAMGA 85 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 GDVKL+ F + + F + GG+LS+ Sbjct: 86 GDVKLMAMVG-AFTGMQDIVGIVLFTFVAGGVLSLA 120 >gi|229588336|ref|YP_002870455.1| type IV prepilin-like proteins leader peptide processing enzyme [Pseudomonas fluorescens SBW25] gi|229360202|emb|CAY47059.1| type IV prepilin-like proteins leader peptide processing enzyme [Pseudomonas fluorescens SBW25] Length = 288 Score = 36.0 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGL 66 + L+ + L+ +L D ++P+ + + +L ++ A L ++G Sbjct: 129 QAGAMLVLSWGLLAMSLIDADHQLLPDALVMPLLWLGLIVNALGLLTTLPDALWGAVIGY 188 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F + MG GD KLL W GW ++ L +++G + + ++ Sbjct: 189 MSLWSVFWLFKLATGKDGMGHGDFKLLALLGAWGGWQILPMT-LLISSLVGVFVGLILMR 247 Query: 123 VRMITNHIPIF 133 +R P+ Sbjct: 248 LRKARASTPMP 258 >gi|91762804|ref|ZP_01264769.1| Type II Secretion PilD [Candidatus Pelagibacter ubique HTCC1002] gi|91718606|gb|EAS85256.1| Type II Secretion PilD [Candidatus Pelagibacter ubique HTCC1002] Length = 199 Score = 36.0 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 12/123 (9%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD---YELIALHLL 63 + + +F I C V DL +IPN ++ ++ LL +F ++ + + L+ Sbjct: 40 LTTLLFFILSICFVIIFFIDLKHFIIPNELTYPLMIIGLLKSFDPNLNTTLFPNLVNSLI 99 Query: 64 VGLIVFIIC-FCFFAFN------IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116 GL +II F + MG GD KLL+ WFGW + + F+ F + + +L Sbjct: 100 GGLFGYIIIWLIIFTYKKLRNKEGMGLGDAKLLSVIGFWFGW--ASIPFVIFFSSVIALL 157 Query: 117 SVF 119 SV Sbjct: 158 SVV 160 >gi|262377011|ref|ZP_06070237.1| type IV pilus prepilin peptidase PilD [Acinetobacter lwoffii SH145] gi|262308049|gb|EEY89186.1| type IV pilus prepilin peptidase PilD [Acinetobacter lwoffii SH145] Length = 286 Score = 36.0 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 6/136 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 LI + L+ D + ++P+R ++ + + ++ L ++G + + Sbjct: 138 LILTYVLIALTFIDFDTQLLPDRYTLPLAALGLGVNSYALYTLPGAAIWGYIIGFLCLWV 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L L + G I+ + +L VR Sbjct: 198 VYYAFKIVTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSLV-GAIIGIILLKVRKEN 256 Query: 128 NHIPIFGMFVPKSFLM 143 ++ Sbjct: 257 QPFAFGPYIAIAGWIA 272 >gi|167037484|ref|YP_001665062.1| peptidase A24A domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040146|ref|YP_001663131.1| peptidase A24A domain-containing protein [Thermoanaerobacter sp. X514] gi|256752524|ref|ZP_05493380.1| peptidase A24A domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914230|ref|ZP_07131546.1| Prepilin peptidase [Thermoanaerobacter sp. X561] gi|307724535|ref|YP_003904286.1| Prepilin peptidase [Thermoanaerobacter sp. X513] gi|320115898|ref|YP_004186057.1| Prepilin peptidase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854386|gb|ABY92795.1| peptidase A24A domain protein [Thermoanaerobacter sp. X514] gi|166856318|gb|ABY94726.1| peptidase A24A domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748590|gb|EEU61638.1| peptidase A24A domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889165|gb|EFK84311.1| Prepilin peptidase [Thermoanaerobacter sp. X561] gi|307581596|gb|ADN54995.1| Prepilin peptidase [Thermoanaerobacter sp. X513] gi|319928989|gb|ADV79674.1| Prepilin peptidase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 252 Score = 36.0 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 4/112 (3%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 ++ L+ + D+ ++PN++ +V +G + + + + L++G + + Sbjct: 103 YMFLASILIAVSFIDIEHRIVPNKIILVGFIGGIIFRVLMYNYGFIDYIMGLVLGGGILL 162 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI--LGGILSVFI 120 + MGGGD+KL+ + GW + L V I LGG++ V + Sbjct: 163 LISLISGGE-MGGGDIKLMALIGFFIGWKLTILVLFLSVIIGALGGVILVAL 213 >gi|258510325|ref|YP_003183759.1| peptidase A24A domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477051|gb|ACV57370.1| peptidase A24A domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 261 Score = 36.0 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 1/123 (0%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 AV+ L A DL S ++P+ +++ F L + L G+ L+A V Sbjct: 108 AVWWAFWLYLASAVACDLTSLILPDVLTLPAGVIFFLGSGLTGIRTWLMAAAGAAVGYVI 167 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 + F MG GD KL G ++F+ AI G + ++ + + Sbjct: 168 VAAIHFVTGGKMGMGDAKLNLGIGAMLGPGYMVMAFVL-AAIYGVLAALPLRLAGRVKPQ 226 Query: 130 IPI 132 PI Sbjct: 227 QPI 229 >gi|254429932|ref|ZP_05043639.1| Bacterial Peptidase A24 N-terminal domain family [Alcanivorax sp. DG881] gi|196196101|gb|EDX91060.1| Bacterial Peptidase A24 N-terminal domain family [Alcanivorax sp. DG881] Length = 269 Score = 36.0 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 23/150 (15%) Query: 18 CLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLIVFIICFCF 75 L+ AA+ D + ++P+ ++ +L + LL A + + + G + + Sbjct: 121 LLLAAAMIDADTTLLPDSLNYWLLWTGLLAAVMGVSPVSLSDAVTGAMAGYLSLWSVYWL 180 Query: 76 FAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 F MG GD KLL + W GW + +++G + ++ ++ Sbjct: 181 FKLITGKEGMGYGDFKLLAALGAWVGW-QYLPVIILLSSVVGLVFAIAMMMF-------- 231 Query: 132 IFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 S + +IP+G ++ G I+ Sbjct: 232 --------SGEKRTQIPFGPYLATAGWIAL 253 >gi|284047857|ref|YP_003398196.1| peptidase A24A domain protein [Acidaminococcus fermentans DSM 20731] gi|283952078|gb|ADB46881.1| peptidase A24A domain protein [Acidaminococcus fermentans DSM 20731] Length = 772 Score = 36.0 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 9/72 (12%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR-------MITNHIPIF 133 MG GD KL +W G SF + + LSV L + + +P+ Sbjct: 178 MGAGDPKLAAVMGLWLGPVLGLRSFFLAMGMA--FLSVAFLGFKTHSRWQEHMAMQVPLA 235 Query: 134 GMFVPKSFLMKN 145 F L+++ Sbjct: 236 PFFFGAGLLLRS 247 >gi|257052852|ref|YP_003130685.1| Peptidase A24B, FlaK domain protein [Halorhabdus utahensis DSM 12940] gi|256691615|gb|ACV11952.1| Peptidase A24B, FlaK domain protein [Halorhabdus utahensis DSM 12940] Length = 375 Score = 36.0 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 18/111 (16%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM---------------- 53 L+ P + A D+ + +PNR + +L ++ G Sbjct: 26 LRLLVVPV-FGWVAWRDVRTRRVPNRTWLPLLVLGVVLLVWDGWLVWTDGLVVDPRVFTP 84 Query: 54 DYELIALHLLVGLIVFI-ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFL 103 L + L + + + + F+ GG D K L A+ F P++L Sbjct: 85 TPALFVFQVAFSLGLLVPLAYAFWWMGGFGGADAKALIVLAILFPTYPTYL 135 >gi|307594683|ref|YP_003901000.1| peptidase A24A prepilin type IV [Vulcanisaeta distributa DSM 14429] gi|307549884|gb|ADN49949.1| peptidase A24A prepilin type IV [Vulcanisaeta distributa DSM 14429] Length = 253 Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 37/100 (37%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 +L+ V A++ DL + I + I+ + + + + L+++ ++ + Sbjct: 12 YLLVLAVQVAASIQDLRTREISDWTWIIGSIMCVPLGLYVVIMLNQLILYIVSVVVGSVF 71 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI 111 + MGG D K + + P L + I Sbjct: 72 ALAVYWLRAMGGADSKSIAFISASIPTLPMATPALTIINI 111 >gi|284048378|ref|YP_003398717.1| peptidase A24A prepilin type IV [Acidaminococcus fermentans DSM 20731] gi|283952599|gb|ADB47402.1| peptidase A24A prepilin type IV [Acidaminococcus fermentans DSM 20731] Length = 211 Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 3/124 (2%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 + L+ L++ +D + + + + L+ L L G +VF Sbjct: 73 VLMLVFTAFLLWMTATDFEQYCLFDTMMLPFALGALVMLARYPDMLVSHLLAGLAGGVVF 132 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 + + +GGGD+KLL + +W G P + +LGG ++ +L + Sbjct: 133 -LAVGLLSRGALGGGDIKLLAALGLWMG--PRLVFVAAAGTVLGGAAALVLLLTGQKSRK 189 Query: 130 IPIF 133 Sbjct: 190 SAFA 193 >gi|326205018|ref|ZP_08194868.1| peptidase A24A prepilin type IV [Clostridium papyrosolvens DSM 2782] gi|325984823|gb|EGD45669.1| peptidase A24A prepilin type IV [Clostridium papyrosolvens DSM 2782] Length = 184 Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 +A + + AAL D+ IP ++++ L + + L G E +A ++ +++ Sbjct: 42 AAAIEVLLIVQLLAALWDINDMTIPLKITVPALSAGVGIVALTGRFSEGMAASIVAFILM 101 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 ++ + N +GGGD+ ++T T ++ G + V + G ++FIL Sbjct: 102 KLLTII--SRNQVGGGDIAIMTVTGLYTGISTLISILFTAVTLAGIFSTIFIL 152 >gi|254423256|ref|ZP_05036974.1| Bacterial Peptidase A24 N-terminal domain family [Synechococcus sp. PCC 7335] gi|196190745|gb|EDX85709.1| Bacterial Peptidase A24 N-terminal domain family [Synechococcus sp. PCC 7335] Length = 276 Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 31/163 (19%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVF--- 69 I L+ AL DL + +PNR++ ++ + + + + + + F Sbjct: 111 IFLCWLLVLALIDLDTMTLPNRLTASGLILGWGFQGSISYLATPTLLSGMSGVVAAFFSS 170 Query: 70 -----------IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 I F MGGGD KL A W GW P L F A +G ++ Sbjct: 171 IFGLWLFDLIGIAGSSVFGKTAMGGGDSKLAAMMAAWLGW-PGLLLATFLAAAMGSLIGG 229 Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 L + MI K +IP+G +++G ++ Sbjct: 230 SALVLGMI---------------DRKQQIPFGPYLALGATLTL 257 >gi|326630079|gb|EGE36422.1| leader peptidase HopD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 197 Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 11/135 (8%) Query: 10 AVFLIPPFCLVFAALS------DLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHL 62 +F+ PF + +A+ S D + ++P+R ++ G L L Sbjct: 42 LMFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGA 101 Query: 63 LVGLIVFIICFCFFAFNI----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 + G F + + + +G GDVK L S W W L + G V Sbjct: 102 IAGYGGFALIYWGYRLRYQKEGLGYGDVKYLASLGAWHCWETLPLLVFLAAMLACGGFGV 161 Query: 119 FILTVRMITNHIPIF 133 +L P+ Sbjct: 162 ALLVRGKSALINPLP 176 >gi|167759924|ref|ZP_02432051.1| hypothetical protein CLOSCI_02288 [Clostridium scindens ATCC 35704] gi|167662543|gb|EDS06673.1| hypothetical protein CLOSCI_02288 [Clostridium scindens ATCC 35704] Length = 257 Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 1/117 (0%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 + L A D+ + I + I M+ ++ F + L L + + + Sbjct: 105 ALTVFAFFCILTVVAFLDIETMEIEDGCQIAMVILAAISIFTMPETSLLARLAGALCVSL 164 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 ++ GGGD+KL+ + ++ GW + +S + + GGI ++L + Sbjct: 165 PMLVLSIVIPGAFGGGDIKLMAACGLFLGWKITLVSAALAI-LFGGIYGCYLLAAQK 220 >gi|148651966|ref|YP_001279059.1| peptidase A24A domain-containing protein [Psychrobacter sp. PRwf-1] gi|148571050|gb|ABQ93109.1| peptidase A24A domain protein [Psychrobacter sp. PRwf-1] Length = 306 Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 8/128 (6%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + +P+ ++ + ++ + + + L L++G + + Sbjct: 157 LVFLWLLIALVGIDFETQYLPDNLTYPLAILGLMVNSHSVFVSPSLSIWGLILGYLSLWV 216 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSF-LFFVAILGGILSVFILTVRMI 126 F MG GD KLL + W G P L F + ++LG I+ + +L R Sbjct: 217 VVKVFYLFTRKQGMGQGDFKLLAALGAWLG--PFMLPFVILLSSVLGTIMGLILLKERRE 274 Query: 127 TNHIPIFG 134 + Sbjct: 275 SQPFAFGP 282 >gi|218884525|ref|YP_002428907.1| peptidase A24A, prepilin type IV [Desulfurococcus kamchatkensis 1221n] gi|218766141|gb|ACL11540.1| peptidase A24A, prepilin type IV [Desulfurococcus kamchatkensis 1221n] Length = 259 Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 39/98 (39%) Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63 S +V + + L+ ++ D I + + V G ++ L Y+ L+L Sbjct: 6 SNLVEAIKIIYFLGFLLVFSIQDYKRREISDNLVYVFTGGSIVFCSLTIYMYKPPPLYLA 65 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPS 101 +V + + +MG GDV ++ S + + P Sbjct: 66 FSFMVPALFIAMYLAGLMGEGDVYVIFSLTLLYPVPPH 103 >gi|307571131|emb|CAR84310.1| type IV leader peptidase / N-methyltransferase [Listeria monocytogenes L99] Length = 211 Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 V+ I + L F ++D+F +PN + IV + ++ AFL ++ ++ Sbjct: 74 VYCIIYYFLAFFFITDIFYMYVPNSILIVFSCALIILAFLYNQPLIDFIYSSILSCFFYL 133 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 + F F +G GD+K+L + + G+ + F + + IL +L R+ N Sbjct: 134 LFFIIFRKG-IGLGDIKILIILSSFLGFKTGYYIFFLAIILGTIILFTALLLKRVKKNK 191 >gi|284163393|ref|YP_003401672.1| peptidase A24A prepilin type IV [Haloterrigena turkmenica DSM 5511] gi|284013048|gb|ADB58999.1| peptidase A24A prepilin type IV [Haloterrigena turkmenica DSM 5511] Length = 349 Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 10/100 (10%) Query: 13 LIPPFCLVFAALSDLFSAMIPN--RVSIVMLGSFLL-----TAFLLGMDYELIALHLLVG 65 L+ + A+ D+ + + + + + +LG+ LL A+ G L Sbjct: 15 LVAVPVFAWVAVRDIKTRRVSSAVWIPLSLLGAVLLVWDGWLAWTTGGTAWTYDFLLPTA 74 Query: 66 LI---VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSF 102 + V I + F+ +GG D K L A++F P + Sbjct: 75 VSLGFVVPIAYLFWWVGGIGGADAKALLVLALFFPVYPEY 114 >gi|332295911|ref|YP_004437834.1| Prepilin peptidase [Thermodesulfobium narugense DSM 14796] gi|332179014|gb|AEE14703.1| Prepilin peptidase [Thermodesulfobium narugense DSM 14796] Length = 245 Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 +DL + +IP+ S++ L + A L G E +A + G+ + MGG Sbjct: 112 FTDLETLLIPDSFSLLSLIPAIGIAALRGNLVESLA--VAAGVFLLFYGVSIITNGGMGG 169 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 GD K S + + G S LF +LG ++ + + +I PI Sbjct: 170 GDTKYSASMSCFLGVFHSLFG-LFTAFLLGSVIGIIFRILGIIKRGEPIP 218 >gi|307131907|ref|YP_003883923.1| prepilin peptidase [Dickeya dadantii 3937] gi|306529436|gb|ADM99366.1| prepilin peptidase [Dickeya dadantii 3937] Length = 283 Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 6/120 (5%) Query: 19 LVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFA 77 L+ A D + ++P+ +++ +L G L + E + + G + + + F Sbjct: 142 LLALAAIDARTQLLPDVMTLPLLWGGLLFNLADTFVPLEQAVVGAMAGYLSLWLIYWAFR 201 Query: 78 F----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 +G GD KLL + W GW + + + ++ G ++ VR I+ P+ Sbjct: 202 LLSGREALGQGDFKLLAALGAWLGW-QALPNLVLIASLTGLAATLLWRRVRRISMQQPLA 260 >gi|217958880|ref|YP_002337428.1| late competence protein comC [Bacillus cereus AH187] gi|217062953|gb|ACJ77203.1| late competence protein comC [Bacillus cereus AH187] Length = 240 Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 4/116 (3%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + + ++ + + + C +GG Sbjct: 113 VTDYIYMLIPNRILAWFACLLILECAFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGLGG 172 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135 GDVKLL+ G F+ G L + + +R P + Sbjct: 173 GDVKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKRMKMRTQIPFGPFISL 228 >gi|307824335|ref|ZP_07654561.1| Prepilin peptidase [Methylobacter tundripaludum SV96] gi|307734715|gb|EFO05566.1| Prepilin peptidase [Methylobacter tundripaludum SV96] Length = 300 Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 6/131 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGL 66 + LI + L+ D+ ++P+ +++ +L L+ F + D + G Sbjct: 142 QAVFALILTWSLIALIFIDVDHQLLPDSITLPLLWLGMCLSLFNVYTDAHASIIGAAAGY 201 Query: 67 IVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 F F MG GD KLL W GW + + +++G ++ V ++ Sbjct: 202 TALWAVFHLFKLATGKEGMGYGDFKLLALFGAWLGWQYLPI-IILLSSLVGAVIGVGMII 260 Query: 123 VRMITNHIPIF 133 +++PI Sbjct: 261 FVKHDHNVPIP 271 >gi|167041756|gb|ABZ06499.1| putative bacterial peptidase A24 N-terminal domain protein [uncultured marine microorganism HF4000_010L19] Length = 262 Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 26/159 (16%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDY---ELIALHLLVGLIVFIICFCFFAF---- 78 DL +IP+ ++ ++ L FL ++ + I L L+ G+ F + Sbjct: 120 DLKHFIIPDILNYGIIVIAFLKNFLPDLNLSFIQDIKLSLMGGIAGFFSIWIIIYLYKTF 179 Query: 79 ---NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 MG GD KL+ + FGW + F+ F+A + G+L + Sbjct: 180 KKKEGMGLGDAKLMAGVGLLFGW--QSIPFVLFLAAVLGLL--------------MVMPS 223 Query: 136 FVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMGL 174 K +K+++P+G I G+I + + +G+ Sbjct: 224 LYEKKKSLKSQVPFGPYIITAGVIYFLYGDVLYKMALGI 262 >gi|33600807|ref|NP_888367.1| hypothetical protein BB1822 [Bordetella bronchiseptica RB50] gi|33568407|emb|CAE32319.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 174 Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 10/106 (9%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS----FLLTAFLLGMDYELIALHLLVG 65 AV++ +VF DL + +PNR+ I + A+ + A Sbjct: 12 AVYVAFNLLVVF---YDLRARRVPNRLLIAAALAQCAWLAWHAWGVQATPAAGARGWSDA 68 Query: 66 LIVFIICFC---FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108 + F++ + +MG GDVK L + G P L + Sbjct: 69 GLGFVLGMAFVMLWRMRLMGAGDVKYLAVLGLAIGAWPWLLVLVLA 114 >gi|319940438|ref|ZP_08014783.1| hypothetical protein HMPREF9464_00002 [Sutterella wadsworthensis 3_1_45B] gi|319806064|gb|EFW02813.1| hypothetical protein HMPREF9464_00002 [Sutterella wadsworthensis 3_1_45B] Length = 101 Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 16/94 (17%) Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140 MG GDVKL + W G ++++GG++ + + +RMI + + ++ Sbjct: 1 MGAGDVKLAAVLSFWAGSDALLFL--ILLSLVGGLMVLGLPLLRMIETKTGFWAERLAEA 58 Query: 141 F--------------LMKNKIPYGIAISMGGLIS 160 F + +PYG+AI+ G Sbjct: 59 FGRPLECTPIGLLGGEAQKGLPYGLAIAAGFAAV 92 >gi|326205020|ref|ZP_08194870.1| peptidase A24A prepilin type IV [Clostridium papyrosolvens DSM 2782] gi|325984825|gb|EGD45671.1| peptidase A24A prepilin type IV [Clostridium papyrosolvens DSM 2782] Length = 167 Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 55/123 (44%), Gaps = 4/123 (3%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 ++I L+F+ LSD+ ++ I N ++ ++ + + G+ + ++ + Sbjct: 4 YIILFIVLLFSVLSDIRTSKIRNIYTVSAIIAGIGINTYFSGI--YGFKESIKGSIVPVL 61 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 I FF ++G GD+KL +S G ++ + ++ G+ S+ IL ++ Sbjct: 62 ILGVFFCARLIGAGDIKLYSSVGAVLGIDFVIMAA-AYSFLVCGLYSLAILCIKRRVLST 120 Query: 131 PIF 133 + Sbjct: 121 LVP 123 >gi|400693|sp|P31712|LEP4_PECCC RecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; AltName: Full=Pectic enzymes secretion protein outO; Includes: RecName: Full=Leader peptidase; AltName: Full=Prepilin peptidase; Includes: RecName: Full=N-methyltransferase gi|581154|emb|CAA49656.1| outO [Pectobacterium carotovorum] Length = 279 Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 6/115 (5%) Query: 24 LSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN--- 79 + D+ + ++P+ +++ +L L + + + G + + + F + Sbjct: 146 VIDIKTLLLPDELTLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGK 205 Query: 80 -IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 +G GD KLL + W GW + + + A+ G ++++ +R P+ Sbjct: 206 EALGYGDFKLLAALGAWLGW-QALPNLVLVAALSGLVVTLIWRGLRKEDTAKPLA 259 >gi|304438510|ref|ZP_07398450.1| possible type II secretory pathway, prepilin signal peptidase PulO and peptidase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368593|gb|EFM22278.1| possible type II secretory pathway, prepilin signal peptidase PulO and peptidase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 186 Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 3/92 (3%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L++ + DL M+ + +++ L+ + + + L+ L V C Sbjct: 43 VLFTAVLLWLSYLDLRDGMLYDCITMPFAVLGLMVSGVDSISDALLGGTL---CGVLFYC 99 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLS 104 A +GGGDVKL +W GW + ++ Sbjct: 100 LYIAARGGLGGGDVKLAAGLGLWLGWEAAIVA 131 >gi|197123320|ref|YP_002135271.1| peptidase A24A prepilin type IV [Anaeromyxobacter sp. K] gi|196173169|gb|ACG74142.1| peptidase A24A prepilin type IV [Anaeromyxobacter sp. K] Length = 170 Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 53/163 (32%), Gaps = 11/163 (6%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M F F L AA SD I NR+++ + + + G + Sbjct: 2 MASPLAFGTFGFLLAVAAASDAAGRRISNRITVPLAVGGIALQAVAGGLAGAAGALVATA 61 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT--- 122 + + + ++ +GGGD KL + A W G GG+ +V L Sbjct: 62 AVG-ALLWVPWSRGWLGGGDWKLAVAAAPWVGLGSLASYLTTSAVAAGGLATVAWLASGG 120 Query: 123 -------VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + ++ + +P G A ++G L Sbjct: 121 AARRDIGANLRAAAAGRPVSIPARAAGDRVSVPAGAAFAVGAL 163 >gi|30261407|ref|NP_843784.1| late competence protein comC [Bacillus anthracis str. Ames] gi|47526583|ref|YP_017932.1| late competence protein comC [Bacillus anthracis str. 'Ames Ancestor'] gi|49184237|ref|YP_027489.1| late competence protein comC [Bacillus anthracis str. Sterne] gi|165870403|ref|ZP_02215058.1| late competence protein comC [Bacillus anthracis str. A0488] gi|167634416|ref|ZP_02392737.1| late competence protein comC [Bacillus anthracis str. A0442] gi|167639212|ref|ZP_02397484.1| late competence protein comC [Bacillus anthracis str. A0193] gi|170686641|ref|ZP_02877861.1| late competence protein comC [Bacillus anthracis str. A0465] gi|170706232|ref|ZP_02896693.1| late competence protein comC [Bacillus anthracis str. A0389] gi|177651410|ref|ZP_02934199.1| late competence protein comC [Bacillus anthracis str. A0174] gi|190568727|ref|ZP_03021631.1| late competence protein comC [Bacillus anthracis Tsiankovskii-I] gi|196035388|ref|ZP_03102793.1| late competence protein comC [Bacillus cereus W] gi|218902512|ref|YP_002450346.1| late competence protein comC [Bacillus cereus AH820] gi|227815854|ref|YP_002815863.1| late competence protein comC [Bacillus anthracis str. CDC 684] gi|229603371|ref|YP_002865823.1| late competence protein comC [Bacillus anthracis str. A0248] gi|254682535|ref|ZP_05146396.1| late competence protein comC [Bacillus anthracis str. CNEVA-9066] gi|254726197|ref|ZP_05187979.1| late competence protein comC [Bacillus anthracis str. A1055] gi|254733953|ref|ZP_05191667.1| late competence protein comC [Bacillus anthracis str. Western North America USA6153] gi|254740359|ref|ZP_05198050.1| late competence protein comC [Bacillus anthracis str. Kruger B] gi|254753747|ref|ZP_05205782.1| late competence protein comC [Bacillus anthracis str. Vollum] gi|254758843|ref|ZP_05210870.1| late competence protein comC [Bacillus anthracis str. Australia 94] gi|30255261|gb|AAP25270.1| late competence protein comC [Bacillus anthracis str. Ames] gi|47501731|gb|AAT30407.1| late competence protein comC [Bacillus anthracis str. 'Ames Ancestor'] gi|49178164|gb|AAT53540.1| late competence protein comC [Bacillus anthracis str. Sterne] gi|164713898|gb|EDR19420.1| late competence protein comC [Bacillus anthracis str. A0488] gi|167512651|gb|EDR88025.1| late competence protein comC [Bacillus anthracis str. A0193] gi|167530304|gb|EDR93030.1| late competence protein comC [Bacillus anthracis str. A0442] gi|170128766|gb|EDS97632.1| late competence protein comC [Bacillus anthracis str. A0389] gi|170669164|gb|EDT19907.1| late competence protein comC [Bacillus anthracis str. A0465] gi|172082688|gb|EDT67751.1| late competence protein comC [Bacillus anthracis str. A0174] gi|190560143|gb|EDV14124.1| late competence protein comC [Bacillus anthracis Tsiankovskii-I] gi|195992065|gb|EDX56028.1| late competence protein comC [Bacillus cereus W] gi|218540179|gb|ACK92577.1| late competence protein comC [Bacillus cereus AH820] gi|227006947|gb|ACP16690.1| late competence protein comC [Bacillus anthracis str. CDC 684] gi|229267779|gb|ACQ49416.1| late competence protein comC [Bacillus anthracis str. A0248] Length = 240 Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + ++ + + + C +GG Sbjct: 113 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 172 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KLL+ I G IL + + V K M Sbjct: 173 GDIKLLSLLGF----------------IAGLKGVFMILFLSSFFSLCFFGAGLVLKRMKM 216 Query: 144 KNKIPYGIAISMGGL 158 + +IP+G IS+G + Sbjct: 217 RTQIPFGPFISLGAI 231 >gi|325678263|ref|ZP_08157891.1| peptidase, A24 family [Ruminococcus albus 8] gi|324110026|gb|EGC04214.1| peptidase, A24 family [Ruminococcus albus 8] Length = 277 Score = 35.6 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 8/113 (7%) Query: 22 AALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGLIVFIICFCFF---- 76 AAL+D IPN + S + L D + I L LI F++ F Sbjct: 142 AALTDFKRRKIPNALIACGAVSRGIIYVLEFIFDRDEILFTLKNDLIGFLLGFVMLFVVA 201 Query: 77 --AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + +G GDVKL V G T +++ L I+ + ++ ++ R T Sbjct: 202 IISKGGIGYGDVKLFGVLGVMAGSTGLYMT-LLISLIINSVTALGLMAARKKT 253 >gi|229102004|ref|ZP_04232717.1| Peptidase A24A domain protein [Bacillus cereus Rock3-28] gi|228681391|gb|EEL35555.1| Peptidase A24A domain protein [Bacillus cereus Rock3-28] Length = 249 Score = 35.6 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 44/115 (38%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IP+R+ I +L + + + ++ ++ + C +GG Sbjct: 122 VTDYIYMLIPDRILISFAFLLILECIFVPLVTWIDSIVGSGVILFLLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 GD+KLL+ G F+ + IL R+ + FG F+ Sbjct: 182 GDIKLLSLLGFIVGLKGVFIILFLASYFSLCFFGMGILLKRIEASKPIPFGPFIS 236 >gi|152980010|ref|YP_001354688.1| leader peptidase (prepilin peptidase) / N-methyltransferase [Janthinobacterium sp. Marseille] gi|151280087|gb|ABR88497.1| leader peptidase (prepilin peptidase) / N-methyltransferase [Janthinobacterium sp. Marseille] Length = 286 Score = 35.6 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 21/154 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P+ +++ +L LL + + G + Sbjct: 135 LLFTYLLIALTFIDADTQLLPDDLTLSLLWLGLLINLNATFVPLHEAVIGAAAGYLSLWS 194 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W GW + + +++G ++ + ++ + Sbjct: 195 IYWLFKLLTGKEGMGYGDFKLLAALGAWLGWKMLPV-IILLSSLVGAVVGIALIVLAKRG 253 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 IP IP+G ++ GLI+ Sbjct: 254 RDIP---------------IPFGPYLAAAGLIAL 272 >gi|134095953|ref|YP_001101028.1| type 4 prepilin-like proteins leader peptide processing enzyme [Herminiimonas arsenicoxydans] gi|133739856|emb|CAL62907.1| type 4 prepilin-like proteins leader peptide processing enzyme (Protein secretion protein XCPA)[Includes: Leader peptidase (Prepilin peptidase); N-methyltransferase ] [Herminiimonas arsenicoxydans] Length = 286 Score = 35.6 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 6/132 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVG 65 + L+ + L+ D + ++P+ +++ +L LL + E + G Sbjct: 129 LLGLATLVFAYLLIAMTFIDADTQLLPDDLTLSLLWLGLLLNLNATFVPLEEAVIGATAG 188 Query: 66 LIVFIICFCFFAFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + W GW + + +++G ++ + ++ Sbjct: 189 YMSLWSIYWLFKLATGKEGMGYGDFKLLAALGAWLGWKMLPV-IILLSSLVGAVVGIALI 247 Query: 122 TVRMITNHIPIF 133 + IPI Sbjct: 248 MLAKRGRDIPIP 259 >gi|118476879|ref|YP_894030.1| N-methyltransferase) [Bacillus thuringiensis str. Al Hakam] gi|229183597|ref|ZP_04310820.1| Peptidase A24A domain protein [Bacillus cereus BGSC 6E1] gi|118416104|gb|ABK84523.1| late competence protein (includes: leader peptidase, N-methyltransferase) [Bacillus thuringiensis str. Al Hakam] gi|228599840|gb|EEK57437.1| Peptidase A24A domain protein [Bacillus cereus BGSC 6E1] Length = 249 Score = 35.6 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + ++ + + + C +GG Sbjct: 122 VTDYIYMLIPNRILAWFCCLLILECVFVPLVTWTESIVGSGVIFILLYCMRKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KLL+ G F+ V ++ RM M Sbjct: 182 GDIKLLSLLGFIVGLKGIFMILFLSSFFSLCFFGVGLVLKRM----------------KM 225 Query: 144 KNKIPYGIAISMGGL 158 + +IP+G IS+G + Sbjct: 226 RTQIPFGPFISLGAI 240 >gi|161506004|ref|YP_001573116.1| hypothetical protein SARI_04185 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867351|gb|ABX23974.1| hypothetical protein SARI_04185 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 197 Score = 35.6 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 6/134 (4%) Query: 6 MVFSAVFLIPPFCL-VFAALSDLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHLL 63 M + FLI + + D + ++P+R ++ G L L + Sbjct: 43 MFAALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLPDALWGAI 102 Query: 64 VGLIVFIICFCFFAFNI----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 G F + + + +G GDVK L + W W L + G V Sbjct: 103 AGYSGFALIYWSYRLRYQKEGLGYGDVKYLAALGAWHCWESLPLLVFLAAMLACGGFGVA 162 Query: 120 ILTVRMITNHIPIF 133 +L P+ Sbjct: 163 LLVRGKSALINPLP 176 >gi|134046468|ref|YP_001097953.1| peptidase A24-like protein [Methanococcus maripaludis C5] gi|132664093|gb|ABO35739.1| Peptidase A24-like protein [Methanococcus maripaludis C5] Length = 346 Score = 35.6 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 7/87 (8%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + V+L ++ A +D+ +IP+ V I+ML L + L ++ I + Sbjct: 7 LILGVYLFNFLLILTATFTDIKERIIPHFVIILMLIVNLPVGYYL-FGFDAITSFFATLI 65 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTA 93 + I+ MGGGDVK+ T+ + Sbjct: 66 LCLILGVG------MGGGDVKMFTALS 86 >gi|84515632|ref|ZP_01002994.1| hypothetical protein SKA53_03201 [Loktanella vestfoldensis SKA53] gi|84510915|gb|EAQ07370.1| hypothetical protein SKA53_03201 [Loktanella vestfoldensis SKA53] Length = 151 Score = 35.6 bits (81), Expect = 2.9, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 7/148 (4%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L+ A + ++ +PN ++++ F+ + D + A L+ +VF++ Sbjct: 8 LMSLILIAAMVIEMRDGRLPNLLTMLPFVVFMAL-IVTAPDPAVFAGRLVGAAMVFVVGL 66 Query: 74 CFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 FA G G VKLLT A++ + +F F I+++F T ++ H Sbjct: 67 VLFAVAGFGAGAVKLLTGLALFIPPEDALATFAIF------IVTMFAGTFIILQLHKRFA 120 Query: 134 GMFVPKSFLMKNKIPYGIAISMGGLISY 161 L K +P + I + GL ++ Sbjct: 121 AQGSKWVILNKRVLPMSLPIGIAGLCAF 148 >gi|285017459|ref|YP_003375170.1| type II secretory pathway prepilin signal peptidase [Xanthomonas albilineans GPE PC73] gi|283472677|emb|CBA15182.1| probable type II secretory pathway prepilin signal peptidase protein [Xanthomonas albilineans] Length = 287 Score = 35.6 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 21/154 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71 ++ LV + DL + ++P+++++ ++ L+ + L M + L VG + Sbjct: 133 IVLSCFLVALSGIDLRTRLLPDQLTLPLMWLGLIGSMDNLYMPAKPALLGAAVGYVSLWS 192 Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + +++G IL Sbjct: 193 VWWLFKQITGKEGMGHGDFKLLAAIGAWCGL-KGILPVILISSLVGAILG---------- 241 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 K IP+G +++ G I++ Sbjct: 242 -----SAWLAAKGRDRATPIPFGPYLAIAGWITF 270 >gi|237807311|ref|YP_002891751.1| Prepilin peptidase [Tolumonas auensis DSM 9187] gi|237499572|gb|ACQ92165.1| Prepilin peptidase [Tolumonas auensis DSM 9187] Length = 286 Score = 35.6 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 53 MDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108 + + + G +V + F MG GD KLL + W GW L L Sbjct: 175 VPLADAVIGAIAGYMVLWSIYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPL-ILIL 233 Query: 109 VAILGGILSVFILTVRMITNHIPIF 133 + +G IL + ++ +R P+ Sbjct: 234 SSCVGAILGITLVVMRRHQQSKPMP 258 >gi|317487399|ref|ZP_07946187.1| bacterial Peptidase A24 domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921331|gb|EFV42629.1| bacterial Peptidase A24 domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 270 Score = 35.6 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 8/133 (6%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTA-FLLGMDYELIALHLLVGLIVF 69 V+L+ L+ A+ DL ++P+ +++ + A F LGMD+ L LVG F Sbjct: 112 VYLVFTGMLIVASGIDLECFILPDGITLGGTVLAVPAAVFALGMDWTDALLGGLVGGGTF 171 Query: 70 IICFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + F + MG GDVKL+ + P L + VA + L+ F+L + Sbjct: 172 LAVLLVFKRLRGVDGMGFGDVKLM--LMLGVLCGPLGLPLITLVAGV-SALAAFLLIACL 228 Query: 126 ITNHIPIFGMFVP 138 + P+ M +P Sbjct: 229 MPREAPLREMPIP 241 >gi|330828057|ref|YP_004391009.1| N-methyltransferase [Aeromonas veronii B565] gi|328803193|gb|AEB48392.1| N-methyltransferase [Aeromonas veronii B565] Length = 290 Score = 35.6 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLI 67 + L+ + LV DL ++P+++++ +L LL G + + G + Sbjct: 134 ALAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLASGFVPLADAVIGAMAGYL 193 Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 V + F MG GD KLL + W GW + L + G ++ + ++ + Sbjct: 194 VLWSLYWAFKLLTSKEGMGYGDFKLLAALGAWLGWQALPIILLLSSLV-GAVIGISLIAL 252 Query: 124 RMITNHIPIF 133 + PI Sbjct: 253 QKHHQGKPIP 262 >gi|152983320|ref|YP_001355009.1| A24A family peptidase [Janthinobacterium sp. Marseille] gi|151283397|gb|ABR91807.1| peptidase A24A family [Janthinobacterium sp. Marseille] Length = 172 Score = 35.6 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 16/155 (10%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL--HLLVGLIVFIICFC 74 + D+ +PN + ++ L G Y + + LL +I I+ Sbjct: 7 LLCIAIIAYDVLFRRVPNSLLLLALLVHTGYMIATGSGYAGLGVTQSLLAVVIALIVFVP 66 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP--- 131 +A +MG GDVK L G F++ F +++ G+ ++ + +M +P Sbjct: 67 LYALRVMGAGDVKFLAIVGALLGLKALFVA-CFIGSLVAGLHALMFYSAQMWLAMMPSGL 125 Query: 132 ----------IFGMFVPKSFLMKNKIPYGIAISMG 156 V + + IPY +++G Sbjct: 126 HRLMQQVGGSSMYQRVLNARQGRKGIPYAAYLAIG 160 >gi|292491516|ref|YP_003526955.1| peptidase A24A prepilin type IV [Nitrosococcus halophilus Nc4] gi|291580111|gb|ADE14568.1| peptidase A24A prepilin type IV [Nitrosococcus halophilus Nc4] Length = 175 Score = 35.3 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 15/161 (9%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 F + F L A+ DL S IPN ++ L+ L++ + L + + Sbjct: 9 AFSLLGFLLAAASYRDLKSHRIPNVLTFGGALLGLILQVWFLGLEGLLSGLGGLTLGLLL 68 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 + MG GDVKLL + + G + + + G ++ + +L VR I + Sbjct: 69 YLPFYLLGG-MGAGDVKLLAAVGAFLGAKAILWVAILSL-LAGSVIGMGVLLVRGIFLEV 126 Query: 131 PIFGMFVPKSFLMKNK-------------IPYGIAISMGGL 158 K L+ PY +AI+ G L Sbjct: 127 WRPYATTAKFLLLAGTYIPPEINRTLNTRFPYAVAIAAGTL 167 >gi|257386920|ref|YP_003176693.1| peptidase A24B, FlaK domain protein [Halomicrobium mukohataei DSM 12286] gi|257169227|gb|ACV46986.1| Peptidase A24B, FlaK domain protein [Halomicrobium mukohataei DSM 12286] Length = 334 Score = 35.3 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 13/139 (9%) Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC------ 74 +AA D+ + +P R + + + G + L + F Sbjct: 35 WAAYRDVKTRRVPTRAWLPLAALAIALLAWDGYGAYVGGDRLFFVQAAISLGFIVPLVTA 94 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI-----LGGILSVFILTVRMITNH 129 F+ GG D K A+ F P + +L + G+ S+ IL+ ++ Sbjct: 95 FWYMGSFGGADTKAFYVLALLFPAYP--IYYLPTTTVPTFQPAIGVFSLTILSNTVVAGA 152 Query: 130 IPIFGMFVPKSFLMKNKIP 148 + G+ + +P Sbjct: 153 LYPVGVAASNLARGRVGLP 171 >gi|228920117|ref|ZP_04083466.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839573|gb|EEM84865.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 249 Score = 35.3 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 42/115 (36%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IP+ + I +L + + + ++ + + + C +GG Sbjct: 122 VTDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 GD+KLL+ G F+ L + I R+ FG F+ Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFLGIGIGLKRIEVRKPIPFGPFIS 236 >gi|114331043|ref|YP_747265.1| prepilin peptidase [Nitrosomonas eutropha C91] gi|114308057|gb|ABI59300.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Nitrosomonas eutropha C91] Length = 286 Score = 35.3 bits (80), Expect = 3.1, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVGLIVFII 71 LI + ++ DL + ++P+ ++ +L + L+ G D + + G + Sbjct: 135 LIFIWAMIILTFIDLNTQLLPDSITQPLLWAGLIVNLHNGFVDIHSAVIGAVAGYLTLWS 194 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W GW L L + I ++ IL Sbjct: 195 VYWLFKLITGKEGMGYGDFKLLAAVGAWLGWQLLPLVILLSSVMGAAIGTILILAANR-- 252 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 +P+G ++ GGLI+ Sbjct: 253 --------------SKGTTLPFGPYLAGGGLIAL 272 >gi|33596965|ref|NP_884608.1| hypothetical protein BPP2372 [Bordetella parapertussis 12822] gi|33566416|emb|CAE37669.1| putative membrane protein [Bordetella parapertussis] Length = 176 Score = 35.3 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 10/98 (10%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGS----FLLTAFLLGMDYELIALHLLVG 65 AV++ +VF DL +PNR+ I + A+ + A Sbjct: 12 AVYVAFNLLVVF---YDLRVRRVPNRLLIAAALAQCAWLAWHAWGVQATPAAGARGWSDA 68 Query: 66 LIVFIICFCF---FAFNIMGGGDVKLLTSTAVWFGWTP 100 + F++ F + +MG GDVK L + G P Sbjct: 69 GLGFVLGMAFVLVWRMRLMGAGDVKYLAVLGLAIGACP 106 >gi|254786984|ref|YP_003074413.1| type 4 prepilin-like protein leader peptide-processing enz [Teredinibacter turnerae T7901] gi|237683637|gb|ACR10901.1| Type 4 prepilin-like protein leader peptide-processing enz [Teredinibacter turnerae T7901] Length = 294 Score = 35.3 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 68/161 (42%), Gaps = 23/161 (14%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + + + +CL+ + D+ ++P+ +++ +L L A G+ +L + Sbjct: 134 LEGLLVAVFTWCLISLTMIDIDHKLLPDTITLPLLWL-GLLANSGGLFVDLHSALYGAAA 192 Query: 67 IVFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 + ++ F + MG GD KLL + W GW L + +++G ++ + Sbjct: 193 GYLSLWSVYWVFKMLTGKEGMGFGDFKLLAALGAWMGWQMLPL-VIILSSLVGAVIGIAG 251 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + ++ ++P IP+G +++ G I++ Sbjct: 252 ILIQGRDKNVP---------------IPFGPYLAIAGWIAF 277 >gi|160913561|ref|ZP_02076252.1| hypothetical protein EUBDOL_00037 [Eubacterium dolichum DSM 3991] gi|158434113|gb|EDP12402.1| hypothetical protein EUBDOL_00037 [Eubacterium dolichum DSM 3991] Length = 248 Score = 35.3 bits (80), Expect = 3.2, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%) Query: 11 VFLIPPFCLVFAALS--DLFSAMIPNRVSIVMLGSFLLTAFLLGMDY--ELIALHLLVGL 66 V L+ +V +S D + +IPNR+ ++ + A + + E I L+V Sbjct: 109 VVLVFLLGMVLLCISCIDFDTMLIPNRILVIFGILVIALAEIEPLPSFKERIGGMLIVSG 168 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 + ++ F GGGD+KL+ G +FL V + GG+ ++ Sbjct: 169 FMLVMNQLIECF---GGGDIKLMFLVGYLLGGRACVFAFLIAV-LTGGVYAI 216 >gi|302384574|ref|YP_003820396.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1] gi|302195202|gb|ADL02773.1| peptidase A24A prepilin type IV [Clostridium saccharolyticum WM1] Length = 171 Score = 35.3 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 35/93 (37%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 +++ L A D IPN + + + L L LL LIV ++ Sbjct: 4 YVVLLLILGTGAFFDAQEHRIPNGLVLWGVIIGFLLEIAGSGKPLAGLLFLLRLLIVTMV 63 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLS 104 F F ++G GD+KL + G L+ Sbjct: 64 FFLLFLCRMIGAGDIKLAALICGFLGLRAGALA 96 >gi|210608611|ref|ZP_03287928.1| hypothetical protein CLONEX_00107 [Clostridium nexile DSM 1787] gi|210152966|gb|EEA83972.1| hypothetical protein CLONEX_00107 [Clostridium nexile DSM 1787] Length = 152 Score = 35.3 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 8/125 (6%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI----IC 72 L+ A+ D IPN ++LG A L G + I+ + + + + Sbjct: 12 VILISIAVVDARKKKIPN----ILLGILFFCAVLSGFIFPEISWPDRIAGGILVSVVFLT 67 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 + G GDVKL+ + + G + +F F +A+ IL Sbjct: 68 VIWIRPGAFGAGDVKLMAISGLMLGVGRNLTAFGFAIALAALYCLPGILRRDRKKESEIA 127 Query: 133 FGMFV 137 FG F+ Sbjct: 128 FGPFL 132 >gi|114321230|ref|YP_742913.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Alkalilimnicola ehrlichii MLHE-1] gi|114227624|gb|ABI57423.1| type 4 prepilin peptidase 1 [Alkalilimnicola ehrlichii MLHE-1] Length = 293 Score = 35.3 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 21/159 (13%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGL 66 +A L+ + LV + DL ++P+ +++ +L L+ + L + +G Sbjct: 134 ETAAALLLTWTLVALSGIDLDHQLLPDSLTLPLLWAGLLVNSTGLFAELTDAVWGAALGY 193 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 +V F F MG GD KLL + W GW L L + G + + ++ Sbjct: 194 LVLWGVFHAFRLLTGKEGMGYGDFKLLAALGAWLGWQALPLIILLSSLV-GAAVGIALIA 252 Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 ++ +P IP+G I+ G I+ Sbjct: 253 LKGRGREVP---------------IPFGPYIAAAGFITL 276 >gi|222530416|ref|YP_002574298.1| peptidase A24A prepilin type IV [Caldicellulosiruptor bescii DSM 6725] gi|222457263|gb|ACM61525.1| peptidase A24A prepilin type IV [Caldicellulosiruptor bescii DSM 6725] Length = 147 Score = 35.3 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M + ++ L FAA+ D IPN +++L +L ++ + + + Sbjct: 1 MSKVILSVLLILILSFAAVYDFKKREIPNIAVVLLLFV-AAVKVILNRNFGNVIIFAIYT 59 Query: 66 LIVFIICFCFFAFNI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113 L + F I +G GD+KLL++ +++FG+ FL L I G Sbjct: 60 LFLLATYFFSEKRGIYLLGEGDIKLLSALSLYFGFD--FLKVLLLTCISG 107 >gi|313884755|ref|ZP_07818510.1| bacterial peptidase A24, N-terminal domain protein [Eremococcus coleocola ACS-139-V-Col8] gi|312620016|gb|EFR31450.1| bacterial peptidase A24, N-terminal domain protein [Eremococcus coleocola ACS-139-V-Col8] Length = 225 Score = 35.3 bits (80), Expect = 3.3, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 5/136 (3%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 S + + L DL IP+ I + F + + I+ H L + Sbjct: 94 SLYYYLFYSILFLMICFDLSYQYIPDLFQIGLFILLFYNYFTFRLLF--ISYHHFFILFI 151 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 I + FF N +GG D+KL+ V + F+ + FF+A G+ I VR I Sbjct: 152 LTILYFFFT-NYIGGADLKLIGILCVCLPFE--FIPYFFFLAASSGLCCCLITKVRQIPF 208 Query: 129 HIPIFGMFVPKSFLMK 144 + F+P L++ Sbjct: 209 VPFLVLAFLPLHILLQ 224 >gi|325111213|ref|YP_004272281.1| peptidase A24A prepilin type IV [Planctomyces brasiliensis DSM 5305] gi|324971481|gb|ADY62259.1| peptidase A24A prepilin type IV [Planctomyces brasiliensis DSM 5305] Length = 188 Score = 35.3 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 10/143 (6%) Query: 8 FSAVFLIPPFCLVFAA-LSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65 + VF++ AA D IPN++++ + ++ G+ +A L Sbjct: 5 EAIVFVVFVTAYTLAATWWDQVYWKIPNKLTLPMFFAGWVYQGVFNGLP--GLADGALGF 62 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 LI F F + GGGDVKL+ + +VW G+ S F+ + V +L + + Sbjct: 63 LIGFGFLFIIWIIGSGGGGDVKLMGALSVWLGFQWSIYVFVISTFL------VSVLAIGI 116 Query: 126 ITNHIPIFGMFVPKSFLMKNKIP 148 + +I G K L+ P Sbjct: 117 VGWNIMSKGTKATKKKLLATGKP 139 >gi|167902902|ref|ZP_02490107.1| family A24A unassigned peptidase [Burkholderia pseudomallei NCTC 13177] Length = 109 Score = 35.3 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 ++ G + + F FFA +MG DVK+ W G P+ ++ G+ ++ ++ Sbjct: 1 MIGGAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGL-PALPRLWVVASVAAGVHALALM 59 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPY 149 + G + + PY Sbjct: 60 LLTRTPPGSLGRGDAPAFALGARRAAPY 87 >gi|313895200|ref|ZP_07828757.1| peptidase, A24 family [Selenomonas sp. oral taxon 137 str. F0430] gi|312976095|gb|EFR41553.1| peptidase, A24 family [Selenomonas sp. oral taxon 137 str. F0430] Length = 189 Score = 35.3 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 5/122 (4%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L++ A D+ + + I + +F F G + +L G + ++ + Sbjct: 44 LFSAVLLWLAFLDVRDGFLYD--CITLPFAFAGVVFSAGGLTMPLIDAILGGTLCGVLFY 101 Query: 74 CFF--AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 C + A MGGGDVK +W GW + ++ ++ ++GG+++ F+L R Sbjct: 102 CLYIAARGGMGGGDVKFALGIGLWLGWESAIIA-VWTAFLIGGMMAAFLLLTRRKGRRDA 160 Query: 132 IF 133 + Sbjct: 161 LP 162 >gi|196040651|ref|ZP_03107950.1| late competence protein comC [Bacillus cereus NVH0597-99] gi|196046431|ref|ZP_03113656.1| late competence protein comC [Bacillus cereus 03BB108] gi|225863267|ref|YP_002748645.1| late competence protein comC [Bacillus cereus 03BB102] gi|196022615|gb|EDX61297.1| late competence protein comC [Bacillus cereus 03BB108] gi|196028441|gb|EDX67049.1| late competence protein comC [Bacillus cereus NVH0597-99] gi|225787313|gb|ACO27530.1| late competence protein comC [Bacillus cereus 03BB102] Length = 240 Score = 35.3 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + ++ + + + C +GG Sbjct: 113 VTDYIYMLIPNRILAWFCCLLILECVFVPLVTWTESIVGSGVIFILLYCMRKIYPEGLGG 172 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KLL+ G F+ V ++ RM M Sbjct: 173 GDIKLLSLLGFIVGLKGIFMILFLSSFFSLCFFGVGLVLKRM----------------KM 216 Query: 144 KNKIPYGIAISMGGL 158 + +IP+G IS+G + Sbjct: 217 RTQIPFGPFISLGAI 231 >gi|297201611|ref|ZP_06919008.1| radical SAM domain-containing protein [Streptomyces sviceus ATCC 29083] gi|297147933|gb|EDY55052.2| radical SAM domain-containing protein [Streptomyces sviceus ATCC 29083] Length = 391 Score = 35.3 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 11/115 (9%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIA--LHLLVGLIVFIICF-CFFAF--NI 80 DL +P+ +++ + + L ++ E H L G + + + Sbjct: 257 DLRVRRLPDPLTLPLAAAALALLGVVSFVPEHTGSWSHALFGALALGAGYWVLWRVNPGG 316 Query: 81 MGGGDVKL---LTSTAVWFGWTPSFLSF---LFFVAILGGILSVFILTVRMITNH 129 MG GDVKL + W+GW L A+ GG L + R Sbjct: 317 MGFGDVKLALGAGAVLGWYGWDTVLLGTFAGFLLGALYGGALVLVGKAGRKTAIP 371 >gi|217964303|ref|YP_002349981.1| type IV leader peptidase family protein [Listeria monocytogenes HCC23] gi|217333573|gb|ACK39367.1| type IV leader peptidase family protein [Listeria monocytogenes HCC23] Length = 236 Score = 35.3 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 V+ I + L F ++D+F +PN + IV + ++ AFL ++ ++ Sbjct: 99 VYCIIYYFLAFFFITDIFYMYVPNSILIVFSCALIILAFLYNQPLIDFIYSSILSCFFYL 158 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 + F F +G GD+K+L + + G+ + F + + IL +L R+ N Sbjct: 159 LFFIIFRKG-IGLGDIKILIILSSFLGFKTGYYIFFLAIILGTIILFTALLLKRVKKNK 216 >gi|71064643|ref|YP_263370.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Psychrobacter arcticus 273-4] gi|71037628|gb|AAZ17936.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Psychrobacter arcticus 273-4] Length = 299 Score = 35.3 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 6/114 (5%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 LI + LV D + ++P+R++ + G + + + LL+G + I Sbjct: 149 LILVWTLVVLTGIDFDTQLLPDRLTFPLAGLGLAVNSQGWFVSPTQSIWGLLLGFLSLWI 208 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 F + MG GD KLL W G L + ++LG I+ + ++ Sbjct: 209 VVKIFYLITKKHGMGQGDFKLLAVLGAWLGPVMLPL-VILLSSLLGSIVGLILI 261 >gi|206577659|ref|YP_002236278.1| peptidase, A24 (type IV prepilin peptidase) family [Klebsiella pneumoniae 342] gi|288933264|ref|YP_003437323.1| peptidase A24A prepilin type IV [Klebsiella variicola At-22] gi|290512067|ref|ZP_06551435.1| leader peptidase HopD [Klebsiella sp. 1_1_55] gi|206566717|gb|ACI08493.1| peptidase, A24 (type IV prepilin peptidase) family [Klebsiella pneumoniae 342] gi|288887993|gb|ADC56311.1| peptidase A24A prepilin type IV [Klebsiella variicola At-22] gi|289775857|gb|EFD83857.1| leader peptidase HopD [Klebsiella sp. 1_1_55] Length = 161 Score = 35.3 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 16/160 (10%) Query: 6 MVFSAVFLI-PPFCLVFAALSDLFSAMIPNRV-SIVMLGSFLLTAFLLGMDYELIALHLL 63 M+ + FL+ + DL ++P+R ++ L L L Sbjct: 1 MLAALPFLLCYSGLTLALCQQDLRYGLLPDRFTCPLLWSGLLFYLCLAPHQLNEAVWGAL 60 Query: 64 VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 G + F + + +G GD+K L + W GW L + G + Sbjct: 61 AGYLSFAALYWLYRRVRGHEGLGYGDIKYLAALGAWHGWRMLPQLVLVASLLAGMTWVIL 120 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 L+ R N + + N +P+G ++ G Sbjct: 121 GLSARCGGN----------RKWEKNNPLPFGPFLAAAGFW 150 >gi|325276681|ref|ZP_08142407.1| peptidase A24A prepilin type IV [Pseudomonas sp. TJI-51] gi|324098188|gb|EGB96308.1| peptidase A24A prepilin type IV [Pseudomonas sp. TJI-51] Length = 156 Score = 35.3 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 2/96 (2%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL--VGLIVFI 70 ++ L + D+ I N +++ + LL F G + IV + Sbjct: 4 IVLLLWLALCSEQDVRQRQISNLLTLGVASCALLWLFATGHSWMGADASDAGWALAIVML 63 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106 + + + G DVKL+ + A+ G +F+ Sbjct: 64 LTLPGYMYGHFGADDVKLMGALALASGTQYVLGTFI 99 >gi|119472645|ref|ZP_01614636.1| Type 4 prepilin-like proteins leader peptide processing enzyme [Alteromonadales bacterium TW-7] gi|119444849|gb|EAW26150.1| Type 4 prepilin-like proteins leader peptide processing enzyme [Alteromonadales bacterium TW-7] Length = 297 Score = 35.3 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 21/159 (13%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVGL 66 + ++++ + LV D+ ++P+++++ ++ L A + + + G Sbjct: 139 QALLYIVITWALVALTFIDIDHMLLPDQLTLPLVWLALTAAVAGITITPSDAIMGAAFGY 198 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 + F F MG GD KLL GW S L+ + +++G I+ + +L+ Sbjct: 199 LSLWSVFWLFKLLTGKEGMGHGDFKLLALFGALLGW-QSLLTIILLSSVVGAIIGIALLS 257 Query: 123 VRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + P IP+G +++ G I+ Sbjct: 258 TQGKDKATP---------------IPFGPYLAIAGWITL 281 >gi|294338833|emb|CAZ87167.1| Type 4 prepilin-like proteins leader peptide-processing enzyme (Protein secretion protein XCPA) (Protein pilD) [Includes: Leader peptidase (Prepilin peptidase); N-methyltransferase] [Thiomonas sp. 3As] Length = 289 Score = 35.3 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 6/130 (4%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLI 67 S +++ + L+ AL D + ++P+ +++ +L LL L + VG + Sbjct: 131 SLAYIVLLWALITLALIDFDTTLLPDSITLPLLWLGLLWHAWLHPEQLSSAVWGAAVGYL 190 Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 + F MG GD KLL + WFG + L + +I G ++ + + + Sbjct: 191 ALWTVYQGFKLLTGKEGMGFGDFKLLAALGAWFGVA-ALLPIILLSSICGAVIGIALQLL 249 Query: 124 RMITNHIPIF 133 ++ PI Sbjct: 250 KLTERGRPIP 259 >gi|296134879|ref|YP_003642121.1| Prepilin peptidase [Thiomonas intermedia K12] gi|295795001|gb|ADG29791.1| Prepilin peptidase [Thiomonas intermedia K12] Length = 289 Score = 35.3 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 6/130 (4%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMD-YELIALHLLVGLI 67 S +++ + L+ AL D + ++P+ +++ +L LL L + VG + Sbjct: 131 SLAYIVLLWALITLALIDFDTTLLPDSITLPLLWLGLLWHAWLHPEQLSSAVWGAAVGYL 190 Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 + F MG GD KLL + WFG + L + +I G ++ + + + Sbjct: 191 ALWTVYQGFKLLTGKEGMGFGDFKLLAALGAWFGVA-ALLPIILLSSICGAVIGIALQLL 249 Query: 124 RMITNHIPIF 133 ++ PI Sbjct: 250 KLTERGRPIP 259 >gi|227328706|ref|ZP_03832730.1| type 4 prepilin-like proteins leader peptide processing enzyme [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 281 Score = 35.3 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 6/115 (5%) Query: 24 LSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN--- 79 + D+ + ++P+ +++ +L L + + + G + + + F + Sbjct: 148 VIDIKTLLLPDVLTLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGK 207 Query: 80 -IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 +G GD KLL + W GW + + + A+ G ++++ +R P+ Sbjct: 208 EALGYGDFKLLAALGAWLGW-QALPNLVLVAALSGLVVTLIWRGLRKEDTAKPLA 261 >gi|229195601|ref|ZP_04322367.1| Peptidase A24A domain protein [Bacillus cereus m1293] gi|228587850|gb|EEK45902.1| Peptidase A24A domain protein [Bacillus cereus m1293] Length = 249 Score = 35.3 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 4/116 (3%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + + ++ + + + C +GG Sbjct: 122 VTDYIYMLIPNRILAWFACLLILECAFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135 GD+KLL+ G F+ G L + + +R P + Sbjct: 182 GDIKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKRMKMRTQIPFGPFISL 237 >gi|303239392|ref|ZP_07325920.1| peptidase A24A prepilin type IV [Acetivibrio cellulolyticus CD2] gi|302593178|gb|EFL62898.1| peptidase A24A prepilin type IV [Acetivibrio cellulolyticus CD2] Length = 208 Score = 35.3 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 4/132 (3%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLI 67 S ++I L A++ D+ + +IPN++ ++ ++ +L +L V Sbjct: 68 SLSYMILTAILFAASIKDIQNRIIPNKLIVLGLILGVILNCLFFSFGRIADSLTTFVLAG 127 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL---FFVAILGGILSVFILTVR 124 ++ F + +G GD KL+ T + G + + A+ G +F R Sbjct: 128 GILLSISFVSKGGLGIGDAKLIACTGMLLGAQKTISVMIISFLASALFGVFSVLFKKLNR 187 Query: 125 MITNHIPIFGMF 136 F +F Sbjct: 188 KSAMAFAPFVLF 199 >gi|218887829|ref|YP_002437150.1| peptidase A24A prepilin type IV [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758783|gb|ACL09682.1| peptidase A24A prepilin type IV [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 196 Score = 35.3 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 8/139 (5%) Query: 15 PPFCLVFAALSDLFSAMIPNRVS-----IVMLGSFLLTAFLLGMD--YELIALHLLVGLI 67 L+ A +DL + IPN ++ + + L A+ G+ ++ + L + Sbjct: 9 LAVVLLVAVTTDLRAMRIPNWLTFPAMLAGVAANAALGAWTGGLSGAWDGLLFSLSGFGL 68 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F +MG GDVKLL + + G F +F+ + ++ GG+ ++ +L + Sbjct: 69 GLGLMLIPFLLRVMGAGDVKLLAAAGAFLGAETVFRAFI-WTSLAGGVYALGVLAFHLPQ 127 Query: 128 NHIPIFGMFVPKSFLMKNK 146 + + V L Sbjct: 128 LRAVLRSLRVSVELLAVTG 146 >gi|110833473|ref|YP_692332.1| leaderpeptidase and N-methyltransferase [Alcanivorax borkumensis SK2] gi|110646584|emb|CAL16060.1| Leaderpeptidase and N-methyltransferase [Alcanivorax borkumensis SK2] Length = 291 Score = 35.3 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 7/120 (5%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF--LLGMDYELIALHLLVGLI 67 A L + L+ AA+ D + ++P+ ++ +L + LL A + + + ++G + Sbjct: 135 AFTLFATWVLLAAAMIDADTTLLPDTLNYWLLWAGLLAAVTGVSPVSLNDAVIGAMMGYL 194 Query: 68 VFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 + F MG GD KLL + W GW + +I+G + ++ ++ Sbjct: 195 SLWSIYWLFKLITGKEGMGYGDFKLLAALGAWVGW-QYLPVIILLSSIVGLVFAIAMMIF 253 >gi|94263266|ref|ZP_01287082.1| Prepilin peptidase [delta proteobacterium MLMS-1] gi|93456349|gb|EAT06473.1| Prepilin peptidase [delta proteobacterium MLMS-1] Length = 270 Score = 35.3 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 7/120 (5%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 V+ I L+ DL +IP+ +S+ + F G+ ++ L +L+G F Sbjct: 115 VYFIFSAALLAIFFIDLDHQLIPDVISLPGIALGFAAALLPGGIGWQAAGLGILLGGGSF 174 Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + + MGGGD+KLL + GW L F+ + L G++ VR Sbjct: 175 YLVALGYYLITRREGMGGGDIKLLAMLGAFLGW--QALPFIILASSLLGLVVGVGAMVRQ 232 >gi|117918874|ref|YP_868066.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Shewanella sp. ANA-3] gi|117611206|gb|ABK46660.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Shewanella sp. ANA-3] Length = 309 Score = 35.3 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 21/153 (13%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVGLIVFIIC 72 + F L+ DL ++P+++++ +L LL + G + Sbjct: 159 VLTFVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTTPTDAVIGAAAGYLSLWSV 218 Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 F F MG GD KLL W GW L + +++G ++ + ++ ++ Sbjct: 219 FWLFKLLTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGALVGITLIVLKRNQL 277 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 P IP+G I+ G I+ Sbjct: 278 ANP---------------IPFGPYIAAAGWIAL 295 >gi|42780493|ref|NP_977740.1| late competence protein comC [Bacillus cereus ATCC 10987] gi|42736412|gb|AAS40348.1| late competence protein comC [Bacillus cereus ATCC 10987] Length = 240 Score = 35.3 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 4/116 (3%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + + ++ + + + C +GG Sbjct: 113 VTDYIYMLIPNRILAWFACLLILECVFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGLGG 172 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135 GD+KLL+ G F+ G L + + +R P + Sbjct: 173 GDIKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKRMKMRTQIPFGPFISL 228 >gi|290893951|ref|ZP_06556927.1| comC protein [Listeria monocytogenes FSL J2-071] gi|290556489|gb|EFD90027.1| comC protein [Listeria monocytogenes FSL J2-071] Length = 236 Score = 35.3 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 V+ I + L F ++D+F +PN + IV + ++ AFL ++ ++ Sbjct: 99 VYCIIYYFLAFFLITDIFYMYVPNSILIVFSCALIILAFLYNQPLIDFIYSSMLSCFFYL 158 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 + F F +G GD+K+L + + G+ + F + + IL +L R+ N Sbjct: 159 LFFIIFRKG-IGLGDIKILIILSSFLGFKTGYYIFFLAIILGTIILFTALLLKRVKKNK 216 >gi|113968762|ref|YP_732555.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Shewanella sp. MR-4] gi|113883446|gb|ABI37498.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Shewanella sp. MR-4] Length = 308 Score = 35.3 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 21/153 (13%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE-LIALHLLVGLIVFIIC 72 + F L+ DL ++P+++++ +L LL + G + Sbjct: 158 VLTFVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTTPTDAVIGAAAGYLSLWSV 217 Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 F F MG GD KLL W GW L + +++G ++ + ++ ++ Sbjct: 218 FWLFKLLTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGALVGITLIVLKRNQL 276 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 P IP+G I+ G I+ Sbjct: 277 ANP---------------IPFGPYIAAAGWIAL 294 >gi|110666997|ref|YP_656808.1| prepilin signal peptidase [Haloquadratum walsbyi DSM 16790] gi|109624744|emb|CAJ51151.1| probable prepilin signal peptidase [Haloquadratum walsbyi DSM 16790] Length = 345 Score = 34.9 bits (79), Expect = 4.0, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 18/122 (14%) Query: 18 CLVFAALSDLFSAMIPNRV------SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 LV+AA D+ + +P+ + V+L + + + G+ + + V + Sbjct: 16 ILVWAAWRDVKTRRLPSYLWPPLVMLGVVLLVWDTSVYFSGLSPIYTPIAIAFLFRVSVS 75 Query: 72 C-------FCFFAFNIMGGGDVKLLTSTAVWFGWTPSF----LSFLFFVAILGGILSVFI 120 C + +A GG D K+L + A+ P + ++F A LG + S+ I Sbjct: 76 CLIIIPLSYGLWAIGGFGGADAKVLMTLAILIPTVPIYQFLGMTFPVVTAPLG-VFSLTI 134 Query: 121 LT 122 LT Sbjct: 135 LT 136 >gi|326939029|gb|AEA14925.1| ComC protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 222 Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IP+ + I +L + + + ++ + + + C +GG Sbjct: 95 VTDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 154 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KLL+ G F+ V I+ R + Sbjct: 155 GDIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGVGIVLKR----------------IEV 198 Query: 144 KNKIPYGIAISMGGL 158 + IP+G IS+G + Sbjct: 199 RKPIPFGPFISLGAI 213 >gi|253996772|ref|YP_003048836.1| peptidase A24A prepilin type IV [Methylotenera mobilis JLW8] gi|253983451|gb|ACT48309.1| peptidase A24A prepilin type IV [Methylotenera mobilis JLW8] Length = 191 Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 26/158 (16%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYE---------LIALHLLVGLIVFIICFCFF 76 D+ S I N++ +V + L+ LL L + + + Sbjct: 25 DVNSHRISNKLVLVGVFIGLVLNGLLPEGLGFNSQVPGALGWLAALKGLAVAMAVFLPLY 84 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF----------------I 120 MG GDVKL+ + G L + + GG++++ + Sbjct: 85 LLRAMGAGDVKLMGMVGTFIGPND-VLGAVLATLVAGGVMALLVTMWSKQLGAMLQNVKL 143 Query: 121 LTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGL 158 + + + K+PY +AI++G Sbjct: 144 IFYGSAVKLSIGQAPLMNDLPVSVRKLPYALAITLGTF 181 >gi|154503359|ref|ZP_02040419.1| hypothetical protein RUMGNA_01183 [Ruminococcus gnavus ATCC 29149] gi|153796026|gb|EDN78446.1| hypothetical protein RUMGNA_01183 [Ruminococcus gnavus ATCC 29149] Length = 153 Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 44/108 (40%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M+ + I F V ++SD + IP+R + +L +L A + + + Sbjct: 1 MMTMLLKSILIFIFVVISISDWRTHKIPDRWNAGILLVAVLLALVDPSVSWQERILGMFA 60 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113 + V + C FF GGGD+K + + V G + + + G Sbjct: 61 VSVPMACLLFFVPGSFGGGDIKFVAAVGVAIGVKLVVMGSAAAILLAG 108 >gi|206576910|ref|YP_002240378.1| pullulanase secretion protein PulO [Klebsiella pneumoniae 342] gi|288937083|ref|YP_003441142.1| prepilin peptidase [Klebsiella variicola At-22] gi|290512504|ref|ZP_06551870.1| general secretion pathway protein O [Klebsiella sp. 1_1_55] gi|206565968|gb|ACI07744.1| pullulanase secretion protein PulO [Klebsiella pneumoniae 342] gi|288891792|gb|ADC60110.1| Prepilin peptidase [Klebsiella variicola At-22] gi|289774845|gb|EFD82847.1| general secretion pathway protein O [Klebsiella sp. 1_1_55] Length = 266 Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 8/127 (6%) Query: 26 DLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NI 80 D + ++P+R+++ +L L + + + G + + F Sbjct: 136 DARTQLLPDRLTLPLLWAGLLFNLNEVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEA 195 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKS 140 +G GD KLL + W GW L + G + ++ + P+ F P Sbjct: 196 LGYGDFKLLAALGAWCGW-QVLPQVLLLASACGLVWTLLQRLWTRQSLQQPLA--FGPWL 252 Query: 141 FLMKNKI 147 L I Sbjct: 253 ALAGGGI 259 >gi|49479782|ref|YP_035532.1| late competence protein (includes: leader peptidase; N-methyltransferase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331338|gb|AAT61984.1| late competence protein (includes: leader peptidase; N-methyltransferase) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 240 Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 4/116 (3%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + ++ + + + C +GG Sbjct: 113 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 172 Query: 84 GDVKLLTSTAVWFG----WTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGM 135 GD+KLL+ G + FLS F + G L++ + +R P + Sbjct: 173 GDIKLLSLLGFIAGLKGVFMILFLSSFFSLCFFGAGLALKRIKMRTQIPFGPFISL 228 >gi|167036507|ref|YP_001664085.1| peptidase A24A, prepilin type IV [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114936|ref|YP_004185095.1| peptidase A24A prepilin type IV [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855341|gb|ABY93749.1| peptidase A24A, prepilin type IV [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928027|gb|ADV78712.1| peptidase A24A prepilin type IV [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 128 Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L FAA+ D+ + +L + L Y + LL L++FI+ Sbjct: 3 ILILLILFFAAVEDIKKMEVGYIYPASILILSFINVLLN--PYINLNFMLLNSLLIFIVL 60 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGW 98 F F+ +GGGDVK+LT+ A + G+ Sbjct: 61 FLFWLLGGIGGGDVKILTALAFYAGF 86 >gi|313106813|ref|ZP_07793026.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa 39016] gi|310879528|gb|EFQ38122.1| Flp prepilin peptidase A, FppA [Pseudomonas aeruginosa 39016] Length = 140 Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 42/132 (31%), Gaps = 2/132 (1%) Query: 30 AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF--FAFNIMGGGDVK 87 + N + + + ++ +++ + + +C + +G DVK Sbjct: 1 MRVSNWLILGGFLISFVYLYVKESSLTGATVNMAMTALFIGVCLSLPGYLLGRLGAADVK 60 Query: 88 LLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKI 147 L + + S F + + + L R + + + ++ Sbjct: 61 YLAALGLASDPLTVLYSLAFGCLLCIALFILVKLFKRSVEKSAMNEEVRLRRAPSKNKSF 120 Query: 148 PYGIAISMGGLI 159 P+ A+S G L Sbjct: 121 PFIFAMSAGLLA 132 >gi|300088227|ref|YP_003758749.1| prepilin peptidase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527960|gb|ADJ26428.1| Prepilin peptidase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 256 Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 7/128 (5%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-----MDYELIALHLLVG 65 + L +V + D+ +I N + + + L+ + G + + G Sbjct: 102 LSLFYAALMVVIFVIDMEHQVILNNILLPAIIIALVVSLFSGQIETVPSVLNAIIGAVAG 161 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 +F++ + + MG GDVKL GW P+ ++ + I G++++ +L R Sbjct: 162 FGIFLVVYIV-SRGGMGEGDVKLGALAGAITGW-PNIMAAVILSWIASGLVAIALLAFRR 219 Query: 126 ITNHIPIF 133 I Sbjct: 220 KGRREAIA 227 >gi|56477531|ref|YP_159120.1| Flp pilus assembly protein [Aromatoleum aromaticum EbN1] gi|56313574|emb|CAI08219.1| hypothetical protein, Flp pilus assembly protein, protease [Aromatoleum aromaticum EbN1] Length = 188 Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 10/130 (7%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLT---------AFLLGMDYELIALHLLVGLIVFIICFC 74 ++DL + IPNR+ + L S + F + +++ + Sbjct: 16 ITDLLTRRIPNRLILAGLVSGFVLHMADLPGAALFATADSIDGVSVAFGGLAVGLAGMLP 75 Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 + MG GDVKL+ + G +F + GGIL++ + + + + Sbjct: 76 LYFLRAMGAGDVKLMMMVGAFLGPLQTF-GVVVLTFAAGGILALGMALWQRSFAQLALNL 134 Query: 135 MFVPKSFLMK 144 F+ + ++ Sbjct: 135 RFMLTTSAVR 144 >gi|219558555|ref|ZP_03537631.1| shikimate 5-dehydrogenase [Mycobacterium tuberculosis T17] Length = 412 Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 + + D+ +PN +++ G LL A L G +A + + ++ A Sbjct: 283 MGVLCVCDVRQRRLPNWLTLPGAGVILLFAGLAGRGVPALAGAAALAGVYLLVHLALPA- 341 Query: 79 NIMGGGDVKLL 89 MG GDVKL Sbjct: 342 -AMGAGDVKLA 351 >gi|320101399|ref|YP_004176991.1| peptidase A24A prepilin type IV [Desulfurococcus mucosus DSM 2162] gi|319753751|gb|ADV65509.1| peptidase A24A prepilin type IV [Desulfurococcus mucosus DSM 2162] Length = 264 Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 54/147 (36%), Gaps = 11/147 (7%) Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61 ++ + + L +L D S I +R+ + G + M + ++ Sbjct: 6 DPVNLLEAVKAVYTLVFLGVFSLQDYRSREISDRLVYLFTGGSAVFLAATLMLHGFDPVY 65 Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG-----------WTPSFLSFLFFVA 110 ++ +V + + +MG GDV ++ S + + P + + + Sbjct: 66 MVFSAVVPLTFTLLYYTGLMGEGDVYVVASLFMLYPSPPRAGFLPRSLLPPLIPIVLYST 125 Query: 111 ILGGILSVFILTVRMITNHIPIFGMFV 137 + ++S+ + +I + + GM + Sbjct: 126 VSVVLISLLYASYTVIVHRNLLKGMPL 152 >gi|218961045|ref|YP_001740820.1| putative bifunctional prepilin leader peptidase and methylase [Candidatus Cloacamonas acidaminovorans] gi|167729702|emb|CAO80614.1| putative bifunctional prepilin leader peptidase and methylase [Candidatus Cloacamonas acidaminovorans] Length = 242 Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 8/101 (7%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIM---- 81 D +IPN +SI +L + ++ F+ G D +I + ++ ++ F +A+ + Sbjct: 107 DALHQIIPNVLSIPLLITGIIFVFIPGNDVGIINGLVTGAVVFCLLLFLAWAYQKIRGTE 166 Query: 82 --GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 GGGD+ L T+ A +FG T + ++F ++ L GI+ I Sbjct: 167 GLGGGDIWLFTALATYFGLTG--IPYIFLLSALMGIIYFLI 205 >gi|150398940|ref|YP_001322707.1| peptidase A24B, FlaK-like protein [Methanococcus vannielii SB] gi|150011643|gb|ABR54095.1| Peptidase A24B, FlaK-like protein [Methanococcus vannielii SB] Length = 234 Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYEL---IALHLLVGLIV 68 ++I L+ A+ DL I + + I M + A L + + +I Sbjct: 8 YIIGAVGLLLASFQDLKKREIEDYIWISMSVIGFIYAIYLSYTLSDYNFLLNSVSGFVIC 67 Query: 69 FIICFCFFAFNIMGGGDVKLL 89 F++ + F +GGGD K+L Sbjct: 68 FVLGYLMFLLG-IGGGDGKIL 87 >gi|45357795|ref|NP_987352.1| hypothetical protein MMP0232 [Methanococcus maripaludis S2] gi|45047355|emb|CAF29788.1| Conserved Hypthetical Protein [Methanococcus maripaludis S2] Length = 346 Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 7/87 (8%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + V+L ++ A +D+ +IP+ V I+ML L + ++ I + Sbjct: 7 LILGVYLFNFLLILTATYTDIKERIIPHFVIILMLIVNLPIGYYF-FGFDAITSFFATLI 65 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTA 93 + I+ MGGGDVK+ T+ + Sbjct: 66 LCLILGVG------MGGGDVKMFTALS 86 >gi|150403154|ref|YP_001330448.1| peptidase A24A prepilin type IV [Methanococcus maripaludis C7] gi|150034184|gb|ABR66297.1| peptidase A24A prepilin type IV [Methanococcus maripaludis C7] Length = 346 Score = 34.9 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 7/87 (8%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + V+L+ ++ A +D+ +IP+ V I+ML L + Y ++ Sbjct: 7 LILGVYLLNFLLILTATFTDIKERIIPHFVIILMLIVNLP------IGYYFFGFDAIISF 60 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTA 93 +I MGGGDVK+ T+ + Sbjct: 61 FATLILCLILGVG-MGGGDVKMFTAIS 86 >gi|194366950|ref|YP_002029560.1| Prepilin peptidase [Stenotrophomonas maltophilia R551-3] gi|194349754|gb|ACF52877.1| Prepilin peptidase [Stenotrophomonas maltophilia R551-3] Length = 287 Score = 34.9 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71 ++ L+ + DL + ++P+++++ ++ L+ + L M + + VG + Sbjct: 133 IVLTCFLIALSGIDLRTQLLPDQLTLPLMWLGLIGSIDNLYMPAKPALVGAAVGYLSLWT 192 Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + ++LG I+ L R Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILLSSVLGAIIGSIWLYSRGRD 251 Query: 128 NHIPIF 133 PI Sbjct: 252 RATPIP 257 >gi|91204076|emb|CAJ71729.1| similar to type IV prepilin-like proteins leader peptide processing enzyme [Candidatus Kuenenia stuttgartiensis] Length = 262 Score = 34.9 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 43/172 (25%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-------------------- 51 +L L+ +A DL +IPN ++ + + F++ + + Sbjct: 82 YLALCCALIISAFVDLELRIIPNEITFIGIPVFVVLSIVCPDLHHAQNTLRRFTFIDIHR 141 Query: 52 --GMDYELIALHLLVGLIVF--IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLF 107 LI + GLI ++ F + MG GDVKL+ Sbjct: 142 LDSFIASLIGIFTGGGLIFLCGVMGKLLFKKDAMGFGDVKLMG----------------M 185 Query: 108 FVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 A++G L+V + V + +FV K + IPYG +S+ L+ Sbjct: 186 IGAVVGWKLAVAVFFVAPFFGLLMAIPVFVFKKSHL---IPYGPFLSIAALV 234 >gi|258620022|ref|ZP_05715062.1| Type 4 prepilin-like protein leader peptide-processing enzyme [Vibrio mimicus VM573] gi|258587755|gb|EEW12464.1| Type 4 prepilin-like protein leader peptide-processing enzyme [Vibrio mimicus VM573] Length = 533 Score = 34.9 bits (79), Expect = 4.3, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 11/111 (9%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 + S V L F L + D S ++PN ++ + L ++ + ++ G Sbjct: 383 IDSFVLLGLYFILFNLFVIDFKSMLLPNLLTYPIF--MLAFIYVQQNPALTVESSIMGGF 440 Query: 67 IVFIICFC------FFA-FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110 FII + FF ++MG GD+KL T+ G F+ +LF ++ Sbjct: 441 AAFIISYVSNVIVRFFKKIDVMGAGDIKLYTALGTLIGVE--FVPYLFLLS 489 >gi|238562620|ref|ZP_04610142.1| peptidase A24A, prepilin type IV [Burkholderia mallei GB8 horse 4] gi|238522206|gb|EEP85652.1| peptidase A24A, prepilin type IV [Burkholderia mallei GB8 horse 4] Length = 135 Score = 34.9 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 1/93 (1%) Query: 57 LIALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGIL 116 ++ L+ G + + F FFA +MG DVK+ W G + + ++ G+ Sbjct: 22 TLSGALIGGAVGLVSLFPFFALRVMGAADVKVFAVLGAWCGLS-ALPRLWVVASVAAGVH 80 Query: 117 SVFILTVRMITNHIPIFGMFVPKSFLMKNKIPY 149 ++ ++ + G + + PY Sbjct: 81 ALALMLLTRTPPGSLGRGGAPAFALGARRAAPY 113 >gi|20807715|ref|NP_622886.1| Signal peptidase, cleaves prepilin-like proteins [Thermoanaerobacter tengcongensis MB4] gi|20516267|gb|AAM24490.1| Signal peptidase, cleaves prepilin-like proteins [Thermoanaerobacter tengcongensis MB4] Length = 252 Score = 34.9 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 38/92 (41%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 V + ++ L+ A+ DL +IPN + I L+ L+ L + + Sbjct: 98 VKAFSYMFLSSVLISASFIDLEHKIIPNSIIIAGFIGALIFRLLMYSYGFLDYILGFLLG 157 Query: 67 IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGW 98 ++ + MGGGDVKL+ + GW Sbjct: 158 GGILLLISLLSGGEMGGGDVKLMALIGFFIGW 189 >gi|37680847|ref|NP_935456.1| hypothetical protein VV2663 [Vibrio vulnificus YJ016] gi|37199596|dbj|BAC95427.1| hypothetical protein [Vibrio vulnificus YJ016] Length = 172 Score = 34.9 bits (79), Expect = 4.4, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 2/130 (1%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 FCL+ A+ D IPN + + L G D+ + L + G+I F F Sbjct: 9 FCLLVVAVYDARDNRIPNAWLLPLTLLACLHWVAKG-DFSQLFLAIGAGVIYFSSGLVLF 67 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 M GDVKLL V GW + + +++ + G++++F + + + + Sbjct: 68 FLRAMSPGDVKLLGVVGVVIGWD-AMGTVAYWITLSAGLVALFFMMLHYAQYPDSLQKLV 126 Query: 137 VPKSFLMKNK 146 SF + Sbjct: 127 GRYSFQAMSG 136 >gi|220927965|ref|YP_002504874.1| peptidase A24A prepilin type IV [Clostridium cellulolyticum H10] gi|219998293|gb|ACL74894.1| peptidase A24A prepilin type IV [Clostridium cellulolyticum H10] Length = 167 Score = 34.9 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 6/116 (5%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGM-DYELIALHLLVGLIVF 69 ++I ++F+ +SD+ ++ I N + ML ++ L GM ++ +++ + +F Sbjct: 4 YIILFLLVLFSVVSDIRTSKIRNIHTASAMLAGLVINTHLSGMYGFKESMEGIILPVFLF 63 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 I FF ++G GD+KL +S FG + + + ++ G+ S+ +L ++ Sbjct: 64 GI---FFYARLIGAGDIKLFSSIGAVFGIDFVIM-VIAYSFLICGLYSLVMLCIKR 115 >gi|188586700|ref|YP_001918245.1| peptidase A24A domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351387|gb|ACB85657.1| peptidase A24A domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 245 Score = 34.9 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 6/130 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ LV + ++DL ++ N++ LLT ++ E + HL+ GL F++ Sbjct: 105 LLLGSLLVISVITDLLKGIVLNKMIFFFGILILLTRIVI---IEELFYHLISGLFSFLLL 161 Query: 73 FCFFAFNI--MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 F + MGGGDVKL + G S S LFF +++G + + L I+ Sbjct: 162 FAVMVLSGHKMGGGDVKLYGIIGLGVGLLDSLAS-LFFASLIGLAVMLPGLISGRISRKT 220 Query: 131 PIFGMFVPKS 140 I + + Sbjct: 221 EIPFVPFIWA 230 >gi|238019097|ref|ZP_04599523.1| hypothetical protein VEIDISOL_00959 [Veillonella dispar ATCC 17748] gi|237864352|gb|EEP65642.1| hypothetical protein VEIDISOL_00959 [Veillonella dispar ATCC 17748] Length = 193 Score = 34.9 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALH 61 + + A++ + ++ A D+ ++P+ ++V++ ++ +F+ + + Sbjct: 31 RAISFIHVALYAVFSLIIIAGATIDMHYYILPDEGALVLVLGGIVYSFINDKSMLVTIIS 90 Query: 62 LLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 ++ + + G GDVK ++ A+W TP + F+VA G L + + Sbjct: 91 VM-SVGAITYGLRLMSHKGFGLGDVKWFSAIAMWL--TPWEIVCFFYVAFCVGSLYLLLT 147 Query: 122 TVR 124 + R Sbjct: 148 SYR 150 >gi|160877166|ref|YP_001556482.1| prepilin peptidase [Shewanella baltica OS195] gi|160862688|gb|ABX51222.1| Prepilin peptidase [Shewanella baltica OS195] gi|315269370|gb|ADT96223.1| Prepilin peptidase [Shewanella baltica OS678] Length = 304 Score = 34.9 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 53/153 (34%), Gaps = 21/153 (13%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 I F LV DL ++P+++++ +L ++ + + G + Sbjct: 154 ILTFVLVALTGIDLDEMLLPDQMTLPLLWLGLIINLNHIFASPTDAIIGAAAGYLSLWSI 213 Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 F F MG GD KLL W GW L ++ + + Sbjct: 214 FWLFKILTGKEGMGYGDFKLLAVFGAWLGWQMLPL----------------VILLSSLVA 257 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + M V K N IP+G I+ G I+ Sbjct: 258 AVVGITMIVSKRLKQGNPIPFGPYIAAAGWIAL 290 >gi|170079198|ref|YP_001735836.1| type 4 prepilin peptidase [Synechococcus sp. PCC 7002] gi|169886867|gb|ACB00581.1| type 4 prepilin peptidase [Synechococcus sp. PCC 7002] Length = 275 Score = 34.9 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 14/146 (9%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPN-----RVSIVMLGSFLLTAFLLGMDYELIALH 61 + + F LV AL D + +PN + + +L L G + L Sbjct: 107 LEAIAAFTLLFWLVALALIDYDTFTLPNPLTQSGLVLGLLFQMGLGFQANGFPGAIYGLM 166 Query: 62 LLVGLIVF---------IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112 +G V +I MGGGD KLL W GW L+ + A+ Sbjct: 167 GGIGAAVLGLWLLDGIGVIGSAVLGQEAMGGGDPKLLAMIGAWLGWQNVLLTVILACALG 226 Query: 113 GGILSVFILTVRMITNHIPIFGMFVP 138 I+ + + FG F+ Sbjct: 227 TMIIGGAMGLGKHQRGQHLPFGPFLA 252 >gi|261402230|ref|YP_003246454.1| Peptidase A24B, FlaK domain protein [Methanocaldococcus vulcanius M7] gi|261369223|gb|ACX71972.1| Peptidase A24B, FlaK domain protein [Methanocaldococcus vulcanius M7] Length = 237 Score = 34.9 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVM-LGSFLLTAFLLGMDYE--LIALHLLVGLIV 68 +LI L+ A++ DL I + + I + + FL + + + I ++ LI Sbjct: 5 YLIGLVGLIIASICDLKDREINDCIWIFITIFGFLYWGYFSFLMHNFIYIGYSVVGFLIC 64 Query: 69 FIICFCFFAFNIMGGGDVKLL 89 F I + F F + GGGD KLL Sbjct: 65 FAIGYIMFLFGV-GGGDGKLL 84 >gi|319786264|ref|YP_004145739.1| prepilin peptidase [Pseudoxanthomonas suwonensis 11-1] gi|317464776|gb|ADV26508.1| Prepilin peptidase [Pseudoxanthomonas suwonensis 11-1] Length = 287 Score = 34.9 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71 ++ + LV + DL + ++P+++++ ++ L+ + L M + L + G + Sbjct: 133 MLLTWYLVALSGIDLRTRLLPDQLTLPLMWLGLIASLDNLYMPAKPALLGAVAGYVSLWS 192 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + +++G ++ L + Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILLSSVVGAVIGSVWLAYKGRD 251 Query: 128 NHIPIF 133 PI Sbjct: 252 RATPIP 257 >gi|88801097|ref|ZP_01116644.1| Prepilin cysteine protease (C20), type IV [Reinekea sp. MED297] gi|88776176|gb|EAR07404.1| Prepilin cysteine protease (C20), type IV [Reinekea sp. MED297] Length = 291 Score = 34.9 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 53/132 (40%), Gaps = 6/132 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-DYELIALHLLVG 65 + + ++ + ++ + D + ++P+ +++ +L + LL + + G Sbjct: 133 LEAFALIVFMWLMISLTMIDFDTHLLPDSMTLPLLWAGLLLNLNDTFVSINDSVIGAVAG 192 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KL + WFGW + + +++G ++ + ++ Sbjct: 193 YLTLWSVYWLFKLTTGKEGMGFGDFKLFAAFGAWFGWIALPM-IILLSSLVGAVVGITMI 251 Query: 122 TVRMITNHIPIF 133 IPI Sbjct: 252 LALGRDRQIPIP 263 >gi|220933965|ref|YP_002512864.1| type IV pilus prepilin peptidase PilD [Thioalkalivibrio sp. HL-EbGR7] gi|219995275|gb|ACL71877.1| type IV pilus prepilin peptidase PilD [Thioalkalivibrio sp. HL-EbGR7] Length = 288 Score = 34.9 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 10/133 (7%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 S L+ + L+ A+ DL + ++P+ SI + ++ LG + L+ + Sbjct: 134 QSGAALLLTWALIALAVIDLRTTLLPD--SITLPFLWIGLLLNLGGLFTDATSSLIGAVA 191 Query: 68 VFIICFCFFA-------FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 ++ + + MG GD KL W GW L + +++G ++ + + Sbjct: 192 GYLSLWLVYHGFKLLTGKEGMGFGDFKLFALIGAWLGWQLLPL-VILLSSLVGAVVGIAL 250 Query: 121 LTVRMITNHIPIF 133 + R P+ Sbjct: 251 ILFRGRDRAHPMP 263 >gi|117923339|ref|YP_863956.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Magnetococcus sp. MC-1] gi|117607095|gb|ABK42550.1| type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A [Magnetococcus sp. MC-1] Length = 265 Score = 34.9 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 10/117 (8%) Query: 26 DLFSAMIPNRV--SIVMLGSFLLTAFLLGMDYELIA---LHLLVGLIVFIICFCFFAFN- 79 D+ ++PN + ++++G +LG + + L ++VG ++ + Sbjct: 120 DMEKRILPNIITYPLLVVGVVCSALPMLGSPFPSMGDALLGMVVGAGGLLVLIEVWYRVT 179 Query: 80 ---IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 MG GDVKL+ + W GW + +F A+LG ++ L PI Sbjct: 180 GRVAMGLGDVKLVGVLSAWLGW-QALYFIIFGSALLGVVVGGGWLIWGGKEKQTPIP 235 >gi|149909374|ref|ZP_01898029.1| type 4 prepilin-like proteins leader peptide processing enzyme [Moritella sp. PE36] gi|149807484|gb|EDM67433.1| type 4 prepilin-like proteins leader peptide processing enzyme [Moritella sp. PE36] Length = 299 Score = 34.9 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLL-TAFLLGMDYELIALHLLVG 65 + A LI + LV D+ ++P+++++ +L L + + +VG Sbjct: 140 IQLAGALILTWTLVALTFIDIDKMLLPDQMTLPLLWLGLFLNVNYAWVTPSDAIIGAIVG 199 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL + WFGW S L+ + + G I+ + + Sbjct: 200 YLSLWSVYWGFKLLTGKEGMGYGDFKLLAAFGAWFGW-QSILAIVLLSSFAGAIIGITQI 258 Query: 122 TVRMITNHIPIF 133 ++ PI Sbjct: 259 ALKKHAKGNPIP 270 >gi|168703132|ref|ZP_02735409.1| hypothetical protein GobsU_26616 [Gemmata obscuriglobus UQM 2246] Length = 262 Score = 34.9 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 42/188 (22%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 ++ +V AA+ D ++ +PN +++ ++ S + L + + A + L V Sbjct: 63 LVVICVGMVLAAVIDGWALKVPNWLTMPLVLSGWMLGGLHDLGVPVDAGTGGLALAVLGT 122 Query: 72 CFC------FFAFNIMGGGDVKLLTSTAVWFGW-----------------TPSFLSFLFF 108 F A +G GDVK+ W G F Sbjct: 123 VFGFALLLPMLAIGGVGAGDVKMQMGFGAWVGAFFGTGGTTAVTGTPLHGMSVVFGAFCF 182 Query: 109 VAILGGILSVFILTVRMI-------------------TNHIPIFGMFVPKSFLMKNKIPY 149 A++GG + I+ +R T + K+PY Sbjct: 183 GAVVGGAFGLIIILIRRQFKQNAGIVREIMSDLHMFGTGQVSAASKRAHDRRSRWTKLPY 242 Query: 150 GIAISMGG 157 GI + +G Sbjct: 243 GIPLCVGF 250 >gi|116623255|ref|YP_825411.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus Ellin6076] gi|116226417|gb|ABJ85126.1| peptidase A24A, prepilin type IV [Candidatus Solibacter usitatus Ellin6076] Length = 138 Score = 34.9 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 20/136 (14%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85 DL +PN ++ + + A G + + + + F++ F MGGGD Sbjct: 18 DLRRRQVPNWLTAAGVAVGVACAAPGG--WRGLGMAAAGAVAGFLLLVPFHWLGAMGGGD 75 Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKN 145 VKL+ G L+ +F ++GG+ + L +R T Sbjct: 76 VKLMAVYGALLGPAGILLAAVF-AGVIGGMCAAGTLLLRPRTAA---------------- 118 Query: 146 KIPYGIAISMGGLISY 161 IPY AI +G +S Sbjct: 119 -IPYAPAIVLGAWVSL 133 >gi|219667520|ref|YP_002457955.1| phage tail tape measure protein, TP901 family [Desulfitobacterium hafniense DCB-2] gi|219537780|gb|ACL19519.1| phage tail tape measure protein, TP901 family [Desulfitobacterium hafniense DCB-2] Length = 1092 Score = 34.9 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 5/94 (5%) Query: 58 IALHLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILS 117 + L + G I+ I + GG KL T+ G + ++ GG+ Sbjct: 564 VGLTVAFGGILKIGGGAISTVGSIAGGLGKLSTALG---GAKLATAGIGTAASVAGGVSG 620 Query: 118 VFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGI 151 + LT + + + + + + YGI Sbjct: 621 LGALTAGLGSAAVAVAPFVLAAGGIAAVG--YGI 652 >gi|146351313|ref|YP_001210540.1| putative type IV leader peptidase [Arthrobacter nitroguajacolicus] gi|146218877|emb|CAL09948.1| putative type IV leader peptidase [Arthrobacter nitroguajacolicus] Length = 196 Score = 34.9 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 20 VFAALSDLFSAMIPN---RVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 + A++D + +PN S +LG+ L++ ++ ++ +A LV + F Sbjct: 60 LVLAVTDFKTHRLPNAFIWPSYGILGALLVSQGVITQEWSDVARAGLVAAATLAVFFLLH 119 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSF 105 + +G GDVKL A+ GW+ + Sbjct: 120 RYTSLGLGDVKLAGMLAIPLGWSSWTAGY 148 >gi|77461043|ref|YP_350550.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Pseudomonas fluorescens Pf0-1] gi|77385046|gb|ABA76559.1| type IV pilus prepilin peptidase PilD [Pseudomonas fluorescens Pf0-1] Length = 290 Score = 34.9 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 5/93 (5%) Query: 45 LLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTP 100 ++ +F L + ++G + F F + +G GD KLL W GW Sbjct: 169 IVNSFELFVPLHDALWGAVLGYMALWSVFWLFKLITGKDGIGHGDFKLLALLGAWGGWQI 228 Query: 101 SFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 L+ + +++G +L V +L +R PI Sbjct: 229 LPLT-ILLSSLVGAVLGVILLKLRDQKTSTPIP 260 >gi|221133816|ref|ZP_03560121.1| prepilin peptidase [Glaciecola sp. HTCC2999] Length = 311 Score = 34.9 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 6/127 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFL-LGMDYELIALHLLVG 65 + + V ++ F L+ + D ++P+ +++ +L LL A + + + ++G Sbjct: 145 IQTLVLIVVSFFLISMIMIDCKHLLLPDDLTLGLLWLGLLVAIWDVFIPLPDAIIGAMLG 204 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 ++ + F + MG GD KLL + + GW + + +I+G +L + I Sbjct: 205 YLILWSIYWGFKLVTGKDGMGYGDFKLLAALGAFVGWY-HLIIVILLASIVGLVLGLLIP 263 Query: 122 TVRMITN 128 + Sbjct: 264 QITRKLP 270 >gi|229095891|ref|ZP_04226869.1| Peptidase A24A domain protein [Bacillus cereus Rock3-29] gi|229114843|ref|ZP_04244256.1| Peptidase A24A domain protein [Bacillus cereus Rock1-3] gi|228668535|gb|EEL23964.1| Peptidase A24A domain protein [Bacillus cereus Rock1-3] gi|228687515|gb|EEL41415.1| Peptidase A24A domain protein [Bacillus cereus Rock3-29] Length = 249 Score = 34.9 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 44/115 (38%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IP+R+ I +L + + + ++ ++ + C +GG Sbjct: 122 VTDYIYMLIPDRILISFAFLLILECIFVPLVTWIDSIVGSGVILFLLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 GD+KLL+ G F+ + IL R+ + FG F+ Sbjct: 182 GDIKLLSLLGFIVGLKGVFIILFLASYCSLCFFGMGILLKRIEASKPIPFGPFIS 236 >gi|76801289|ref|YP_326297.1| preflagellin peptidase [Natronomonas pharaonis DSM 2160] gi|76557154|emb|CAI48729.1| probable preflagellin peptidase [Natronomonas pharaonis DSM 2160] Length = 356 Score = 34.9 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 32/148 (21%) Query: 24 LSDLFSAMIPN--RVSIVMLGSFLLTA---FLLGMDYEL----------IALHLLVGLIV 68 D+ + IPN + ++ +G L + G + LL V Sbjct: 51 YRDIETRRIPNRTWLPLLAVGIIALLWDTVAVTGFVTPTEVPTFERRRFVVQTLLSVGFV 110 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF-----------------LFFVAI 111 + + F+ GG D K + + AV F P++ F + A+ Sbjct: 111 APLGYIFWRIGGFGGADAKAIITLAVAFPVYPTYYVFQSAYPLYEAPLGVFSFTILSNAV 170 Query: 112 LGGILSVFILTVRMITNHIPIFGMFVPK 139 + G+ +L VR + MF+ + Sbjct: 171 VVGLAYPLVLAVRNLPRGEITPAMFIGR 198 >gi|254499403|ref|ZP_05112069.1| type IV prepilin peptidase PilD [Legionella drancourtii LLAP12] gi|254351382|gb|EET10251.1| type IV prepilin peptidase PilD [Legionella drancourtii LLAP12] Length = 286 Score = 34.9 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 6/111 (5%) Query: 18 CLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+ D+ ++P+ +++ +L + L L I + F Sbjct: 139 LLICLFFIDVDHQLLPDSITLSLLWLGLIANTENLFAPLPEAVLSAAGAYIGLWLFIKLF 198 Query: 77 AFN----IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 MG GD KL + WFGW L L F +I G I+ + L + Sbjct: 199 YLVTGKIGMGNGDFKLFAAFGAWFGWKFLPL-ILLFSSIAGTIIGLLYLYL 248 >gi|170720027|ref|YP_001747715.1| peptidase A24A prepilin type IV [Pseudomonas putida W619] gi|169758030|gb|ACA71346.1| peptidase A24A prepilin type IV [Pseudomonas putida W619] Length = 146 Score = 34.9 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 2/90 (2%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL--VGLIVFIICFCFF 76 L + D+ I N +++ + L+ + G + IV ++ + Sbjct: 12 LALCSGQDVRERQISNLLTLGVAACALVWLAVTGHSWIGARASDAGWALAIVLLLTLPGY 71 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106 G GDVKLL + + +F+ Sbjct: 72 VMGRFGAGDVKLLAALGLATSQDYVLGTFI 101 >gi|547850|sp|P36642|LEP4_PSEPU RecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; AltName: Full=Protein pilD; AltName: Full=Protein secretion protein XCPA; Includes: RecName: Full=Leader peptidase; AltName: Full=Prepilin peptidase; Includes: RecName: Full=N-methyltransferase gi|396265|emb|CAA52334.1| prepilin peptidase [Pseudomonas putida] Length = 288 Score = 34.9 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 6/123 (4%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVG 65 V + V L + L+ +L D ++P+ + + + ++ F + + +VG Sbjct: 129 VEALVLLPLTWSLLALSLIDHDQQLLPDAIVLPGLWLGLIVNYFGVWVPLPDAVCGAVVG 188 Query: 66 LIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + + F MG GD KLL W GW L+ L ++LG ++ V++L Sbjct: 189 YLSLWTVYWLFKLVTGKEGMGYGDFKLLALLGAWGGWQVLPLTLLL-SSVLGALVGVYLL 247 Query: 122 TVR 124 VR Sbjct: 248 RVR 250 >gi|182418647|ref|ZP_02949924.1| bacterial Peptidase A24 N- domain family [Clostridium butyricum 5521] gi|237668589|ref|ZP_04528573.1| bacterial Peptidase A24 N-terminal domain family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377509|gb|EDT75063.1| bacterial Peptidase A24 N- domain family [Clostridium butyricum 5521] gi|237656937|gb|EEP54493.1| bacterial Peptidase A24 N-terminal domain family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 250 Score = 34.9 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 4/155 (2%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 MK M+++ F I L+ ++ D + + ++ ++ + Y + Sbjct: 89 MKYGFMIYTVEFCILISLLIVISMIDYNTQEVYTSTTVFGAIVGVIFILINKFVYGENVM 148 Query: 61 HLLVGLI--VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 +LL+G + II + MG GD+++ ++ G L+ + + G + V Sbjct: 149 NLLMGGLTGAAIIGAIVYLTKGMGEGDIEIAGVCGLFLGVKQIILALFLAIMLGGAVGVV 208 Query: 119 FILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAI 153 IL FG F+ L+ I YG A+ Sbjct: 209 VILLNLKNIKDKIAFGPFIAIGTLIA--ILYGNAL 241 >gi|300309697|ref|YP_003773789.1| bifunctional leader peptidase/N-methyltransferase transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300072482|gb|ADJ61881.1| bifunctional enzyme: leader peptidase/N-methyltransferase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 34.9 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 53 MDYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFF 108 + + L G V + F F + +G GD KL+ + W GW + L Sbjct: 177 VPLQDAVLGAAAGYGVLWLIFWLFKLITGKDGLGYGDFKLMAALGAWLGW-QALPVILLL 235 Query: 109 VAILGGILSVFILTVRMITNHIPIF 133 + +G +L V ++ I Sbjct: 236 ASAMGAVLGVVLMAAGRHRRGQAIP 260 >gi|324325422|gb|ADY20682.1| late competence protein comC [Bacillus thuringiensis serovar finitimus YBT-020] Length = 240 Score = 34.5 bits (78), Expect = 5.2, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 4/116 (3%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + + ++ + + + C +GG Sbjct: 113 VTDYIYMLIPNRILAWFACLLILECAFIPLVTWIDSIVGSCVIFILLYCMQKIYPEGLGG 172 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFV----AILGGILSVFILTVRMITNHIPIFGM 135 GD+KLL+ G F+ G L + + +R P + Sbjct: 173 GDIKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVLKRMKMRTQIPFGPFISL 228 >gi|312126636|ref|YP_003991510.1| peptidase a24a prepilin type iv [Caldicellulosiruptor hydrothermalis 108] gi|311776655|gb|ADQ06141.1| peptidase A24A prepilin type IV [Caldicellulosiruptor hydrothermalis 108] Length = 146 Score = 34.5 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 4/92 (4%) Query: 6 MVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVG 65 M L A+ D+ + IP+ + + + + +L++ Sbjct: 1 MQSLLALLGATVLAAIASYYDIKTRQIPDWIWALAAVLAVAIWQKNILKNG----NLMIA 56 Query: 66 LIVFIICFCFFAFNIMGGGDVKLLTSTAVWFG 97 +++FI F + ++GGGD+KL+++ A+ G Sbjct: 57 ILIFICLFLLAYYRLLGGGDLKLISALALLVG 88 >gi|126696026|ref|YP_001090912.1| leader peptidase (prepilin peptidase) / N-methyltransferase [Prochlorococcus marinus str. MIT 9301] gi|126543069|gb|ABO17311.1| leader peptidase (prepilin peptidase) / N-methyltransferase [Prochlorococcus marinus str. MIT 9301] Length = 267 Score = 34.5 bits (78), Expect = 5.3, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 28/160 (17%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV-GLIVFIIC 72 I L A+ D +P ++ S ++T+ + + +L + ++ L+ ++ Sbjct: 111 IFSVILFTLAILDFKYFWLPQVLTSGGFVSGIITSLYIDLSNDLYQFNYVIYTLLASLLG 170 Query: 73 FCFFAF-----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 F FF ++GGGD KL W G F+S ++ I GI + L Sbjct: 171 FTFFNLLSRIGKKIYNKPVIGGGDAKLGAMIGSWLGIQGLFIS-IWLAFISAGIFVIVGL 229 Query: 122 TVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + I + KIP+GI +++ GL+ + Sbjct: 230 IFKKIKRN---------------QKIPFGIFLALSGLLVW 254 >gi|224370124|ref|YP_002604288.1| PilD [Desulfobacterium autotrophicum HRM2] gi|223692841|gb|ACN16124.1| PilD [Desulfobacterium autotrophicum HRM2] Length = 258 Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 7/141 (4%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGL 66 + + LV + D+ +IP+ +S+ + F + + MD+ L ++ G Sbjct: 101 ATLFYFTFAATLVVISFIDIDFQIIPDIISLPGILVFASASVFIPRMDFMDTILGIVAGG 160 Query: 67 IVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLF--FVAILGGILSVFI 120 + + MGGGD+KLL GW + + GG++ + + Sbjct: 161 GTLYLVALVYYLIRKEEGMGGGDIKLLAMIGGVVGWQGVAFTLFAGSLMGTAGGVIIMVL 220 Query: 121 LTVRMITNHIPIFGMFVPKSF 141 + + IP S Sbjct: 221 TRLGDVKLKIPFGPFLSAGSL 241 >gi|254412692|ref|ZP_05026465.1| Bacterial Peptidase A24 N-terminal domain family [Microcoleus chthonoplastes PCC 7420] gi|196180427|gb|EDX75418.1| Bacterial Peptidase A24 N-terminal domain family [Microcoleus chthonoplastes PCC 7420] Length = 276 Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 15/106 (14%) Query: 19 LVFAALSDLFSAMIPNRVS----IVMLGSFLLTAFLLGMDYELIALHLLVGL-------- 66 L+ +L DL + +PN ++ +V + AF I+ L+ G+ Sbjct: 114 LLALSLIDLDTMTLPNSLTQSGLVVGIVFQGAFAFFQTAQLSDISAQLMTGISGAVLGIW 173 Query: 67 ---IVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109 I+ ++ F MGGGD KL W GW L+ Sbjct: 174 LFDIITLVGSIVFGQTAMGGGDAKLAAMMGAWLGWKYLLLAGFLAC 219 >gi|94272432|ref|ZP_01292123.1| Prepilin peptidase [delta proteobacterium MLMS-1] gi|93450134|gb|EAT01466.1| Prepilin peptidase [delta proteobacterium MLMS-1] Length = 270 Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 7/120 (5%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 V+ I L+ DL +IP+ +S+ + F G+ ++ L +L+G F Sbjct: 115 VYFIFSAALLAIFFIDLDHQLIPDVISLPGIALGFTAALLPGGIGWQAAGLGILLGGGSF 174 Query: 70 IICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRM 125 + + MGGGD+KLL + GW L F+ + L G++ VR Sbjct: 175 YLVALGYYLITRREGMGGGDIKLLAMLGAFLGW--QALPFIILASSLLGLVVGVGAMVRQ 232 >gi|255026816|ref|ZP_05298802.1| hypothetical protein LmonocytFSL_11676 [Listeria monocytogenes FSL J2-003] Length = 193 Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 ++ I + L F ++D+F +PN + IV A L + + + + Sbjct: 98 LLYYIIYYFLAFFFITDIFYLYVPNSILIVFFCVLATIAILYNQTLMDLIYSGGISCLFY 157 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFL 106 ++ F F +G GD+K+L + + G+ + F Sbjct: 158 LLFFIIFRKG-IGLGDIKILIILSTFLGFKIGYYIFF 193 >gi|170723699|ref|YP_001751387.1| prepilin peptidase [Pseudomonas putida W619] gi|169761702|gb|ACA75018.1| Prepilin peptidase [Pseudomonas putida W619] Length = 288 Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 21/151 (13%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + L+ +L D ++P+ + + + ++ F + + G + + Sbjct: 137 FTWSLLALSLVDHDKQILPDVLVLPTLWLGLIVNVFDTVVPLSDAIWGAVAGYLSLWTVY 196 Query: 74 CFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 F MG GD KLL W GW L+ L +++G ++ + +L +R Sbjct: 197 WLFKLITGKEGMGYGDFKLLALIGAWGGWQVVPLT-LMLSSLVGAVVGLCMLRLR----- 250 Query: 130 IPIFGMFVPKSFLMKNKIPYGIAISMGGLIS 160 S M IP+G +++ G I+ Sbjct: 251 ----------SHSMGTAIPFGPYLAIAGWIA 271 >gi|42522434|ref|NP_967814.1| leader peptidase (prepilin peptidase) [Bdellovibrio bacteriovorus HD100] gi|39574966|emb|CAE78807.1| leader peptidase (prepilin peptidase) [Bdellovibrio bacteriovorus HD100] Length = 259 Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 6/113 (5%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 +LI F LV DL ++P+ ++ + L+ A L L AL ++ F+ Sbjct: 103 YLIFIFGLVVCTFIDLDHMILPDEFTLSGIVIGLVGAALNPQREFLDALFGVLMGGGFLW 162 Query: 72 CFC----FFAFN-IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 F N MGGGD+KLL GW + + AI+G ++ + Sbjct: 163 GMAYVYYMFTKNEGMGGGDIKLLAWIGAIVGW-KAIPFVIMTSAIVGSVIGLI 214 >gi|184156663|ref|YP_001845002.1| Type II secretory pathway, prepilin signal peptidase PulO [Acinetobacter baumannii ACICU] gi|332873071|ref|ZP_08441028.1| type 4 prepilin-like protein leader peptide-processing enzyme [Acinetobacter baumannii 6014059] gi|183208257|gb|ACC55655.1| Type II secretory pathway, prepilin signal peptidase PulO [Acinetobacter baumannii ACICU] gi|322506550|gb|ADX02004.1| pilD [Acinetobacter baumannii 1656-2] gi|323516429|gb|ADX90810.1| Type II secretory pathway, prepilin signal peptidase PulO [Acinetobacter baumannii TCDC-AB0715] gi|332738583|gb|EGJ69453.1| type 4 prepilin-like protein leader peptide-processing enzyme [Acinetobacter baumannii 6014059] Length = 286 Score = 34.5 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 7/103 (6%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLG-SFLLTAFLLGMDYELIALHLLVGLIVFII 71 LI + L+ D + ++P+R ++ + + F + L+G + I Sbjct: 138 LILTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWI 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA 110 + F MG GD KLL + W G P L + ++ Sbjct: 198 VYYLFKVITGKEGMGYGDFKLLAALGAWMG--PLMLPLIVLLS 238 >gi|283788029|ref|YP_003367894.1| T2SS leader peptidase GspO [Citrobacter rodentium ICC168] gi|282951483|emb|CBG91182.1| putative T2SS leader peptidase GspO [Citrobacter rodentium ICC168] Length = 257 Score = 34.5 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 10/139 (7%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV- 68 A+FL F L + DL ++P+++++ +L LL G+ A+ Sbjct: 113 ALFLYFWFALAL-CIIDLRHLLLPDKLTLPLLWCGLLFNSYTGLISCEEAITGAAAGYAS 171 Query: 69 --FIICFC--FFAFNIMGGGDVKLLTSTAVWFGWT--PSFLSFLFFVAILGGILSVFILT 122 + F + +G GD+KL + W GW P + ++I G+ + IL Sbjct: 172 LWLLNAFVRLLWRKEGIGYGDLKLFAAVGAWTGWQSLPPVIYIAAMMSIFYGL--LMILR 229 Query: 123 VRMITNHIPIFGMFVPKSF 141 R + IP + Sbjct: 230 TRRRISVIPFGPGLAVSGW 248 >gi|297545408|ref|YP_003677710.1| stage II sporulation protein E, protein serine/threonine phosphatase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843183|gb|ADH61699.1| stage II sporulation protein E, protein serine/threonine phosphatase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 783 Score = 34.5 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 16/171 (9%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 +A+ ++ F + + ++ +I N I + S L F+LG+++ + L G++ Sbjct: 149 ITAMLMVFIFNHAVSFILNVNRKIISNEELISL--SIFLGLFILGLNHLNVWKFTLNGIL 206 Query: 68 VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAI----LGGILSVFILTV 123 +I F +G G S G S F V+I G+L+ + + Sbjct: 207 GTLIIFLASYIGGVGVG-----ASIGTTIGLIGSLSFFQMPVSIGLFGFAGLLAGSLKKL 261 Query: 124 RMITNHIPIFGMFVPKSFLMKNKI-----PYGIAISMGGLISYPDSYLFKV 169 I I +F + + I PY I ++ + P Y+ KV Sbjct: 262 HRIGVIIGFLTAIFIITFYVTSSIDMLINPYDIVLASLMFAALPKKYIVKV 312 >gi|170724673|ref|YP_001758699.1| prepilin peptidase [Shewanella woodyi ATCC 51908] gi|169810020|gb|ACA84604.1| Prepilin peptidase [Shewanella woodyi ATCC 51908] Length = 303 Score = 34.5 bits (78), Expect = 5.5, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 6/134 (4%) Query: 5 KMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLL 63 + A+ F L+ DL ++P+++++ +L ++ + + Sbjct: 144 PTIEFALATTLTFGLIVLTGIDLDEMLLPDQITLPLLWLGLIINLNGTFVSPTDAIIGAA 203 Query: 64 VGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 G + F F MG GD KLL W GW + + +++G I+ + Sbjct: 204 AGYMSLWSVFWGFKLLTGKEGMGYGDFKLLAVFGAWLGWQLLPI-IVLLSSLVGAIIGIG 262 Query: 120 ILTVRMITNHIPIF 133 ++ + I + PI Sbjct: 263 LIVTKKINHTNPIP 276 >gi|332970969|gb|EGK09943.1| leader peptide processing enzyme [Desmospora sp. 8437] Length = 152 Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 1/87 (1%) Query: 22 AALSDLFSAMIPNRVSIV-MLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNI 80 A ++DL +I +R ++ + + + + + L L + + Sbjct: 21 ATVTDLRERLIYDRFVLIGLAFALGIHLYSRHYSWTEYILTSLGAFFALALIAILTKGSA 80 Query: 81 MGGGDVKLLTSTAVWFGWTPSFLSFLF 107 +GGGD+KL G L F+ Sbjct: 81 IGGGDIKLFAMIGFATGLEDFILIFMV 107 >gi|322834636|ref|YP_004214663.1| Prepilin peptidase [Rahnella sp. Y9602] gi|321169837|gb|ADW75536.1| Prepilin peptidase [Rahnella sp. Y9602] Length = 276 Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 20/155 (12%) Query: 17 FCLVFA-ALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 FCL+++ + D ++P+ + ++L S LL + L G+ + +I++++ + Sbjct: 127 FCLLYSLTVIDFNHLILPDSLVSLLLWSGLLCSVL-GITDIGPRSAICGAVIIWLVLYAV 185 Query: 76 FAF-------NIMGGGDVKLLTSTAVWFGWT--PSFLSFLFFVAILGGILSVFILTVRMI 126 A +G GDVKL+ + VW G P + + I+ +L + R + Sbjct: 186 MAAYEKWRGREGLGYGDVKLMAAITVWVGMEKIPELIMWSAASGIMVYVLCTVLNQRRTL 245 Query: 127 TNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + P K+ IP+G +ISM GL+ + Sbjct: 246 DENHPAAE---------KHYIPFGPSISMAGLVIF 271 >gi|332978026|gb|EGK14767.1| leader peptidase (prepilin peptidase)/N-methyltransferase [Desmospora sp. 8437] Length = 228 Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%) Query: 30 AMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLL 89 +IPNR++ + FLL L G + L G + + + +GGGD+K+ Sbjct: 99 RLIPNRLNGMAALGFLLVRLLSGQEVLSPLGAGLFGGGIL-LAISLLSRGGVGGGDMKMA 157 Query: 90 TSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 + + GW P + + + GG+ + F+L + P+ Sbjct: 158 AAAGLALGW-PKVATGVGLAVLSGGLWASFLLMTGKVDRKTPLP 200 >gi|167039389|ref|YP_001662374.1| peptidase A24A, prepilin type IV [Thermoanaerobacter sp. X514] gi|300914031|ref|ZP_07131348.1| peptidase A24A prepilin type IV [Thermoanaerobacter sp. X561] gi|307725284|ref|YP_003905035.1| peptidase A24A prepilin type IV [Thermoanaerobacter sp. X513] gi|166853629|gb|ABY92038.1| peptidase A24A, prepilin type IV [Thermoanaerobacter sp. X514] gi|300890716|gb|EFK85861.1| peptidase A24A prepilin type IV [Thermoanaerobacter sp. X561] gi|307582345|gb|ADN55744.1| peptidase A24A prepilin type IV [Thermoanaerobacter sp. X513] Length = 128 Score = 34.5 bits (78), Expect = 5.7, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 4/122 (3%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L FAA+ D+ + +L + L Y + LL L++FI+ Sbjct: 3 ILILLILFFAAVEDIKKMEVGYIYPASILILSFINVLLN--PYINLNFMLLNSLLIFIVL 60 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 F F+ +GGGDVK+LT+ + + G+ L F +++ + S+ + + +P Sbjct: 61 FLFWLLGGIGGGDVKILTALSFYAGFR--IWDILLFSSMIFLLYSLILCRFKAKLPFMPA 118 Query: 133 FG 134 Sbjct: 119 VA 120 >gi|254525344|ref|ZP_05137399.1| type II secretory pathway prepilin signal peptidase [Stenotrophomonas sp. SKA14] gi|219722935|gb|EED41460.1| type II secretory pathway prepilin signal peptidase [Stenotrophomonas sp. SKA14] Length = 287 Score = 34.5 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 8/127 (6%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L+ + DL + ++P+++++ ++ L+ + + + + L + Sbjct: 133 IVLTCFLIALSGIDLRTQLLPDQLTLPLMWLGLIGS-IDNLYMPAKPALIGAALGYLSLW 191 Query: 73 FCFFAFN------IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 ++ F MG GD KLL + W G L + ++LG I+ L R Sbjct: 192 AVWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILLSSVLGAIIGSIWLYSRGR 250 Query: 127 TNHIPIF 133 PI Sbjct: 251 DRATPIP 257 >gi|238790278|ref|ZP_04634052.1| Flp pilus assembly protein, protease CpaA [Yersinia frederiksenii ATCC 33641] gi|238721628|gb|EEQ13294.1| Flp pilus assembly protein, protease CpaA [Yersinia frederiksenii ATCC 33641] Length = 79 Score = 34.5 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 14/87 (16%) Query: 75 FFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 NI+G GD+KLL A+ F L +L ++ILG L++ Sbjct: 1 MVTINIVGAGDIKLLAVLALTFP-DGIILGYLLVMSILGCGLAIIEFIRLRFEKR----- 54 Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISY 161 +PYG+AI+ L Sbjct: 55 --------QSRGLPYGVAIAGSYLFVL 73 >gi|119505107|ref|ZP_01627183.1| Peptidase A24A, prepilin type IV:Peptidase A24A, N-terminal [marine gamma proteobacterium HTCC2080] gi|119459089|gb|EAW40188.1| Peptidase A24A, prepilin type IV:Peptidase A24A, N-terminal [marine gamma proteobacterium HTCC2080] Length = 288 Score = 34.5 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 20/125 (16%) Query: 54 DYELIALHLLVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFV 109 + G + + F + MG GD KLL + WFGW L + Sbjct: 177 SLNDAVIGAAAGYLTLWSVYWIFKLTTGKDGMGFGDFKLLAALGAWFGWQAIPL-IIILS 235 Query: 110 AILGGILSVFILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKV 169 + +G + + ++ ++ +P +P+G ++ GL++ Sbjct: 236 SFVGAFIGILLILLKKQGREVP---------------MPFGPYLAGAGLLTLFYGDQLTA 280 Query: 170 ALMGL 174 L Sbjct: 281 TYFSL 285 >gi|146294510|ref|YP_001184934.1| prepilin peptidase [Shewanella putrefaciens CN-32] gi|145566200|gb|ABP77135.1| Prepilin peptidase [Shewanella putrefaciens CN-32] Length = 308 Score = 34.5 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 23/154 (14%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + F L+ DL ++P+++++ +L LL A+ + + Sbjct: 158 LLTFVLIALTGIDLDEMLLPDQLTLPLLWLGLLLNLHHTFASPTDAI-IGAAAGYLSLWS 216 Query: 74 CFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 F+ F + MG GD KLL W GW L + +++G ++ + Sbjct: 217 IFWVFKLLTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGAVVGI--------- 266 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 GM + K M N IP+G I+ G I+ Sbjct: 267 ------GMIISKRNQMDNPIPFGPYIAAAGWIAL 294 >gi|319427875|gb|ADV55949.1| type IV prepilin peptidase, PilD [Shewanella putrefaciens 200] Length = 308 Score = 34.5 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 23/154 (14%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + F L+ DL ++P+++++ +L LL A+ + + Sbjct: 158 LLTFVLIALTGIDLDEMLLPDQLTLPLLWLGLLLNLHHTFASPTDAI-IGAAAGYLSLWS 216 Query: 74 CFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 F+ F + MG GD KLL W GW L + +++G ++ + Sbjct: 217 IFWVFKLLTGKEGMGYGDFKLLAVFGAWLGWQMLPL-VILLSSLVGAVVGI--------- 266 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 GM + K M N IP+G I+ G I+ Sbjct: 267 ------GMIISKRNQMDNPIPFGPYIAAAGWIAL 294 >gi|289667055|ref|ZP_06488130.1| type II secretory pathway prepilin signal peptidase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 287 Score = 34.5 bits (78), Expect = 6.0, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 21/154 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71 ++ LV + DL ++P+++++ ++ L+ + L M + L VG + Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192 Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + +++G IL Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILISSLVGAILG---------- 241 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 V K IP+G +++ G + + Sbjct: 242 -----SAWLVAKGRDRATPIPFGPYLAIAGWVVF 270 >gi|320531949|ref|ZP_08032852.1| hypothetical protein HMPREF9057_00720 [Actinomyces sp. oral taxon 171 str. F0337] gi|320135842|gb|EFW27887.1| hypothetical protein HMPREF9057_00720 [Actinomyces sp. oral taxon 171 str. F0337] Length = 225 Score = 34.5 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 15/141 (10%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRV-------SIVMLGSFLLTAFLLGMDYELIAL 60 V L L A D +PNR+ + + +L + G Sbjct: 67 EVIVALPLVALLGAACSVDAVCHRLPNRILGPAALWTGAATTTLVLLNVVTGTPLSEAGW 126 Query: 61 HL------LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF--LFFVAIL 112 L V V + + MG GD KL +W G+ + + + Sbjct: 127 ALLRSVLCAVSAGVIVGAMALLPGSGMGLGDAKLCAVLGLWLGYFGGTYTAMGIILGFFI 186 Query: 113 GGILSVFILTVRMITNHIPIF 133 GG++++ ++ R+ + I Sbjct: 187 GGLVAIALMISRLASRKTLIA 207 >gi|220931445|ref|YP_002508353.1| Prepilin peptidase [Halothermothrix orenii H 168] gi|219992755|gb|ACL69358.1| Prepilin peptidase [Halothermothrix orenii H 168] Length = 246 Score = 34.5 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 18/136 (13%) Query: 26 DLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 D+ +IPN ++ M+ + + L + + L +L+ I I F +G G Sbjct: 113 DIREKIIPNVITFPGMVTGLISSIILKHIGFWNSLLGILIPGIFLFIIALIFK-GGLGMG 171 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVKL+ + G + ++ F G ++ IL V K Sbjct: 172 DVKLVAMIGAFTGVRWALMA--LFTGAFLGAITGIILI--------------VSGVLDRK 215 Query: 145 NKIPYGIAISMGGLIS 160 +P+G IS+GGL+S Sbjct: 216 KPVPFGPFISIGGLVS 231 >gi|75759993|ref|ZP_00740060.1| ComC protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899985|ref|ZP_04064222.1| Peptidase A24A domain protein [Bacillus thuringiensis IBL 4222] gi|228964364|ref|ZP_04125479.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|74492512|gb|EAO55661.1| ComC protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228795304|gb|EEM42795.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228859651|gb|EEN04074.1| Peptidase A24A domain protein [Bacillus thuringiensis IBL 4222] Length = 249 Score = 34.5 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 16/134 (11%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +D +IP+ + I +L + + + ++ + + + C +GGG Sbjct: 123 TDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGGG 182 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 D+KLL+ G F+ + I+ R ++ Sbjct: 183 DIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGIGIVLKR----------------IEVR 226 Query: 145 NKIPYGIAISMGGL 158 IP+G IS+G + Sbjct: 227 KPIPFGPFISLGAI 240 >gi|240136823|ref|YP_002961290.1| putative prepilin peptidase (fragment) [Methylobacterium extorquens AM1] gi|240006787|gb|ACS38013.1| putative prepilin peptidase (fragment) [Methylobacterium extorquens AM1] Length = 158 Score = 34.5 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 7/108 (6%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF------- 78 DL +IP++V++ +L + L G+ I L+ F++ + A Sbjct: 25 DLRRRIIPDQVNLALLILGAGASALRGLALPQILASLVAAAGAFLLAWSLRAAYARLRGR 84 Query: 79 NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 +G GDVK + + A W G L L + +L R + Sbjct: 85 TGLGLGDVKFMGAAAAWTGLAGLPLMILVASLSALAAFGLAVLAGRRL 132 >gi|222151542|ref|YP_002560698.1| hypothetical protein MCCL_1295 [Macrococcus caseolyticus JCSC5402] gi|222120667|dbj|BAH18002.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 245 Score = 34.5 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 7/122 (5%) Query: 19 LVFAALSDLFSAMIPNRV------SIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ ++ D+ + IPN++ +++ ++L + ++ LI+ ++ Sbjct: 100 LIPLSIIDIETYTIPNQLLTLFFSCLMIGYTYLFIFHSETISEIKFEHIMIKLLIILLLH 159 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 FF +G GD+KL + F P +++ F ++GG S+ L+ + IP+ Sbjct: 160 IFFFVTKSIGYGDIKLF-VILLIFLPIPYYIAMFFMTYLIGGFASMVFLSYKRNLKKIPL 218 Query: 133 FG 134 Sbjct: 219 VP 220 >gi|228907036|ref|ZP_04070900.1| Peptidase A24A domain protein [Bacillus thuringiensis IBL 200] gi|228852540|gb|EEM97330.1| Peptidase A24A domain protein [Bacillus thuringiensis IBL 200] Length = 249 Score = 34.5 bits (78), Expect = 6.4, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 16/134 (11%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +D +IP+ + I +L + + + ++ + + + C +GGG Sbjct: 123 TDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGGG 182 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 D+KLL+ G F+ + I+ R ++ Sbjct: 183 DIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGIGIVLKR----------------IEVR 226 Query: 145 NKIPYGIAISMGGL 158 IP+G IS+G + Sbjct: 227 KPIPFGPFISLGAI 240 >gi|88859014|ref|ZP_01133655.1| Type 4 prepilin-like proteins leader peptide processing enzyme [Pseudoalteromonas tunicata D2] gi|88819240|gb|EAR29054.1| Type 4 prepilin-like proteins leader peptide processing enzyme [Pseudoalteromonas tunicata D2] Length = 305 Score = 34.5 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 56/132 (42%), Gaps = 8/132 (6%) Query: 8 FSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 + ++L + L+ D+ ++P+++++ +L L A + G+ E + L Sbjct: 147 QTVLYLGVTWALIALIFIDIDHMLLPDQITLPLLWL-GLLASIFGLTIEPAQAIIGAALG 205 Query: 68 VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 ++ F + MG GD KL+ GW + + +++G ++ + +L Sbjct: 206 YLSFWSVYWLFKLATGKEGMGYGDFKLMAVFGALLGW-QALPMIILLSSLVGAVIGITLL 264 Query: 122 TVRMITNHIPIF 133 +++ PI Sbjct: 265 SIQGKDKATPIP 276 >gi|254253321|ref|ZP_04946639.1| Type II secretory pathway prepilin signal peptidase PulO [Burkholderia dolosa AUO158] gi|124895930|gb|EAY69810.1| Type II secretory pathway prepilin signal peptidase PulO [Burkholderia dolosa AUO158] Length = 303 Score = 34.5 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 10/132 (7%) Query: 10 AVFLIPPFCLVFAALS--DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLI 67 A C A+S D+ ++ +P+ +++ +L + L A L G L + + Sbjct: 149 AALAAFGLCAALLAMSAIDIRTSYLPDSMTLPLLWA-GLAANLGGTFTSLRSAVIGAMAG 207 Query: 68 VFIICFCFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + ++ F +G GD+KLL + W GW + + F A+ G I+ + + Sbjct: 208 YLFLWAIYWLFKWLRGIEGIGFGDLKLLAALGAWMGWA-ALPQVVLFAAVTGAIVGLVAM 266 Query: 122 TVRMITNHIPIF 133 + PI Sbjct: 267 WRGRMRFEEPIP 278 >gi|281417571|ref|ZP_06248591.1| peptidase A24A domain protein [Clostridium thermocellum JW20] gi|281408973|gb|EFB39231.1| peptidase A24A domain protein [Clostridium thermocellum JW20] Length = 281 Score = 34.5 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 14/133 (10%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGS---------FLLTAFLLGMDYELIALHLLVG---- 65 L+ DL +IPN++ +V L F + + L +G Sbjct: 124 LIAVFFIDLDHMIIPNKLVVVALVGGVLPFVYNIFRPMDIYVDRKWWNPLLGAFIGFGFL 183 Query: 66 LIVFIICFCFFAFN-IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 L+V I+ + + + MGGGDVKL ++ GW + ++ G + V +L + Sbjct: 184 LLVAIVGYLVYKTDEAMGGGDVKLFAPIGLFLGWKMTIVALFISFVSAGIVSIVLLLLKK 243 Query: 125 MITNHIPIFGMFV 137 +FG F+ Sbjct: 244 KERRSTFVFGPFI 256 >gi|114564937|ref|YP_752451.1| prepilin peptidase [Shewanella frigidimarina NCIMB 400] gi|114336230|gb|ABI73612.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Shewanella frigidimarina NCIMB 400] Length = 308 Score = 34.5 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 21/153 (13%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSI-VMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 I F LV DL ++P+++++ ++ ++ + E + G + Sbjct: 158 ILTFVLVALTGIDLDEMLLPDQLTLPILWLGLIINLKGIYTSPEDAIIGAAAGYLSLWSV 217 Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 F F MG GD KLL W GW L L + G ++ + ++ Sbjct: 218 FWLFKLVTGKEGMGYGDFKLLAVFGAWLGWQMLPLIILLSSLV-GAVVGITMI------- 269 Query: 129 HIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 + K N IP+G I+ G I+ Sbjct: 270 --------MAKQLNKGNPIPFGPYIAAAGWIAL 294 >gi|228938520|ref|ZP_04101128.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971399|ref|ZP_04132025.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978012|ref|ZP_04138391.1| Peptidase A24A domain protein [Bacillus thuringiensis Bt407] gi|228781673|gb|EEM29872.1| Peptidase A24A domain protein [Bacillus thuringiensis Bt407] gi|228788266|gb|EEM36219.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821118|gb|EEM67135.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 249 Score = 34.1 bits (77), Expect = 6.9, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IP+ + I +L + + + ++ + + + C +GG Sbjct: 122 VTDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KLL+ G F+ V I+ R + Sbjct: 182 GDIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGVGIVLKR----------------IEV 225 Query: 144 KNKIPYGIAISMGGL 158 + IP+G IS+G + Sbjct: 226 RKPIPFGPFISLGAI 240 >gi|91785277|ref|YP_560483.1| Type 4 prepilin-like peptidase, leader peptide processing enzyme [Burkholderia xenovorans LB400] gi|91689231|gb|ABE32431.1| Type 4 prepilin-like peptidase, leader peptide processing enzyme [Burkholderia xenovorans LB400] Length = 318 Score = 34.1 bits (77), Expect = 6.9, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 7/135 (5%) Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHL 62 + A F + L +A+ D+ + ++P+ +++ +L ++ + + L Sbjct: 161 PTLTALAAFGLCAALLAMSAI-DIDTHLLPDSLTLPLLWAGIIVNFNGMFANLHDAVLGA 219 Query: 63 LVGLIVFIICFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 + G +V + F MG GD KLL + W GW + + A+ G ++ + Sbjct: 220 IFGYLVLWVVHWLFRLVRGVEGMGYGDFKLLAALGAWLGWA-ALPQIVLIAAVAGAVIGL 278 Query: 119 FILTVRMITNHIPIF 133 + P+ Sbjct: 279 LATWRGRMRFEEPLP 293 >gi|227495464|ref|ZP_03925780.1| prepilin peptidase [Actinomyces coleocanis DSM 15436] gi|226831011|gb|EEH63394.1| prepilin peptidase [Actinomyces coleocanis DSM 15436] Length = 226 Score = 34.1 bits (77), Expect = 6.9, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 9/124 (7%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM------DYELIALHLLVGLI-VFII 71 L +A DL +PNR++ + L FLL L + IA + L+ Sbjct: 86 LALSAYVDLAVHKLPNRLTFLALVIFLLGLGLRLIILPFENPLPFIASAVFGALVWGLPP 145 Query: 72 CFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSF--LFFVAILGGILSVFILTVRMITNH 129 ++ +G GDVKL W G ++ L ++GG ++++++TV+ Sbjct: 146 ALIYYLMKGIGFGDVKLAPVLGAWLGLYGFETAYVGLTVAFLIGGAVALYLVTVKKQAMK 205 Query: 130 IPIF 133 I Sbjct: 206 TRIA 209 >gi|163857695|ref|YP_001631993.1| putative Flp pilus assembly protease [Bordetella petrii DSM 12804] gi|163261423|emb|CAP43725.1| putative Flp pilus assembly protease [Bordetella petrii] Length = 142 Score = 34.1 bits (77), Expect = 7.0, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 7/120 (5%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGM-------DYELIALHLLVGLIVFIICFCFF 76 +D +PN + + L A + L+G + ++ + Sbjct: 3 AADWRHRRVPNVLVVAGASFQGLWAGAAALKVGWHYPPMWTSWGMALLGFAMALLFVPLW 62 Query: 77 AFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMF 136 MG D+K++ + + G + + GG +++ R T + + Sbjct: 63 MRRSMGAADIKVIAAYGLMLGPRGLLAVLMLGSLLAGGHALLYLGASRRWTLPHSLGRVP 122 >gi|168335415|ref|ZP_02693506.1| hypothetical protein Epulo_10182 [Epulopiscium sp. 'N.t. morphotype B'] Length = 137 Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 6/103 (5%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L+ ++SD + +IP + + ++ ++ M+ I H++ LI+ I Sbjct: 4 VLMCVYLICISISDAATKIIPPKFTAAIMCLGIIN---TAMNANNIVEHIVGMLIIPSIL 60 Query: 73 FCFFAF---NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112 F F MGGGD+KL+T ++ G + ++F I Sbjct: 61 FLIIVFTKEQAMGGGDLKLMTGAGLYLGSSKIMIAFSTACYIA 103 >gi|156741688|ref|YP_001431817.1| peptidase A24A prepilin type IV [Roseiflexus castenholzii DSM 13941] gi|156233016|gb|ABU57799.1| peptidase A24A prepilin type IV [Roseiflexus castenholzii DSM 13941] Length = 149 Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 11 VFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFI 70 + L LV+ +++D+ IPNRV L + LL A + L+ L+ G++ + Sbjct: 8 LMLAAAAVLVYVSITDIRERCIPNRVMFPALLTALLVALARPERWSLLLGGLVAGVL-LV 66 Query: 71 ICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNH 129 + + GGGDVKL + GW P+ L L + + + + +R ++ Sbjct: 67 LPTLIYGLEKAGGGDVKLGLFIGLVLGW-PAILPALGLAFVSATLFAAGGMLLRRLSWR 124 >gi|317054337|ref|YP_004118362.1| Prepilin peptidase [Pantoea sp. At-9b] gi|316952332|gb|ADU71806.1| Prepilin peptidase [Pantoea sp. At-9b] Length = 251 Score = 34.1 bits (77), Expect = 7.2, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 9/137 (6%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L L+ +L D+ ++P+ V++ +L LL + L L V + + Sbjct: 108 LFFCGSLLVLSLIDIRHYLLPDAVTLPLLWCGLLLHCCAILPGSLSDAVLGVAVGYVSLA 167 Query: 73 FCFFAFNIM------GGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMI 126 A++ + G GD KLL + A W GW L + +A GGIL +++ + Sbjct: 168 VLAHAYHWLRQQQGLGMGDAKLLAAIAAWTGW--QALPNVLIIASSGGIL-FALISRNLW 224 Query: 127 TNHIPIFGMFVPKSFLM 143 + F P L Sbjct: 225 PQRVRQTIAFGPWLALA 241 >gi|119946931|ref|YP_944611.1| prepilin peptidase [Psychromonas ingrahamii 37] gi|119865535|gb|ABM05012.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Psychromonas ingrahamii 37] Length = 290 Score = 34.1 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 6/126 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIP-NRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + L+ D + ++P N ++ L+ D L + G + Sbjct: 138 LVFTWVLISLTFIDFDTMLLPDNLTLPLLWLGLLINISGTFTDISSAVLGAIFGYLTLWS 197 Query: 72 CFCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + WFGW L + + G I+ + I+ Sbjct: 198 IYWGFKIVTGKEGMGYGDFKLLAALGAWFGWQALPL-IILLSSFSGAIIGIAIMLASKDK 256 Query: 128 NHIPIF 133 P+ Sbjct: 257 QSRPMP 262 >gi|163751666|ref|ZP_02158886.1| type 4 prepilin-like proteins leader peptide processing enzyme [Shewanella benthica KT99] gi|161328492|gb|EDP99647.1| type 4 prepilin-like proteins leader peptide processing enzyme [Shewanella benthica KT99] Length = 303 Score = 34.1 bits (77), Expect = 7.3, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 8/126 (6%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICF 73 + F L+ DL ++P+++++ +L F L L G + + Sbjct: 153 LLTFVLMALTGIDLDEMLLPDQLTLPLLW-FGLLINLNGTFTSGSDALIGAAAGYLSLWS 211 Query: 74 CFFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 F+AF + MG GD KLL WFGW L L + G ++ + ++ + + Sbjct: 212 VFWAFKLLTGKDGMGYGDFKLLAVFGAWFGWQLLPLIILLSSIV-GAVVGIMLIISKKLN 270 Query: 128 NHIPIF 133 + PI Sbjct: 271 HGNPIP 276 >gi|186477405|ref|YP_001858875.1| prepilin peptidase [Burkholderia phymatum STM815] gi|184193864|gb|ACC71829.1| Prepilin peptidase [Burkholderia phymatum STM815] Length = 309 Score = 34.1 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCF 75 L+ + D+ + ++P+ +++ +L ++ + + + G + Sbjct: 164 ATLLAMSAIDIDTHLLPDSMTLPLLWAGLIVNFNAVFATLHDAVVGAIAGYLALWCVHWL 223 Query: 76 FAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIP 131 F MG GD KLL++ W GWT + + A+ G ++ +F + + P Sbjct: 224 FKIVRGVEGMGYGDFKLLSALGAWLGWT-ALPQIILIAAVTGAVVGLFATWIGRMRFEEP 282 Query: 132 IF 133 + Sbjct: 283 LP 284 >gi|121610839|ref|YP_998646.1| prepilin peptidase [Verminephrobacter eiseniae EF01-2] gi|121555479|gb|ABM59628.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Verminephrobacter eiseniae EF01-2] Length = 294 Score = 34.1 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 7/112 (6%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFC 74 + A D + ++P+ +++ +L + LL+A L +D L L + Sbjct: 141 FSAASMALACIDWDTTLLPDDITLPLLWAGLLSAALQWIDLPLYDSVLGAVAGYLSLWLV 200 Query: 75 FFAFNI------MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 ++ F + MG GD KL + WFGW + + + +++G + + + Sbjct: 201 YWGFKLATGKEGMGYGDFKLFAALGAWFGW-QALVPIILLSSVIGAGVGIAM 251 >gi|238922466|ref|YP_002935979.1| hypothetical protein EUBREC_0040 [Eubacterium rectale ATCC 33656] gi|238874138|gb|ACR73845.1| Hypothetical protein EUBREC_0040 [Eubacterium rectale ATCC 33656] Length = 162 Score = 34.1 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L AA+ D + I NR+ + LG L + G I L + +I + + Sbjct: 4 ILLTVAAIGDFKNYRISNRLILTGLGCAFLFRLVGG-KVASIIWFLPDIVFPVVILYFLY 62 Query: 77 AFNIMGGGDVKLLTSTA 93 I+G GD+KL + Sbjct: 63 LSGILGAGDIKLFSVVC 79 >gi|52144030|ref|YP_082798.1| late competence protein (includes: leader peptidase; N-methyltransferase) [Bacillus cereus E33L] gi|51977499|gb|AAU19049.1| late competence protein (includes: leader peptidase; N-methyltransferase) [Bacillus cereus E33L] Length = 240 Score = 34.1 bits (77), Expect = 7.9, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IPNR+ +L + + ++ + + + C +GG Sbjct: 113 VTDYIYMLIPNRILAWFSCLLILECVFVPLVTWTESIVGSGVIFILLYCMQKIYPEGLGG 172 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KL + G F+ V ++ RM M Sbjct: 173 GDIKLFSLLGFIVGLKGIFMILFLSSFFSLCFFGVGLVLKRM----------------KM 216 Query: 144 KNKIPYGIAISMGGL 158 + +IP+G IS+G + Sbjct: 217 RTQIPFGPFISLGAI 231 >gi|218896337|ref|YP_002444748.1| late competence protein comC [Bacillus cereus G9842] gi|218545239|gb|ACK97633.1| late competence protein comC [Bacillus cereus G9842] Length = 240 Score = 34.1 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 16/134 (11%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 +D +IP+ + I +L + + + ++ + + + C +GGG Sbjct: 114 TDYLYMLIPDCILISFAVLLILESVFVQLVTWTDSIVGSGVIFILLYCMQKIYPEGLGGG 173 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 D+KLL+ G F+ + I+ R ++ Sbjct: 174 DIKLLSLLGFIVGVKGVFIILFLASCFSLCFFGIGIVLKR----------------IEVR 217 Query: 145 NKIPYGIAISMGGL 158 IP+G IS+G + Sbjct: 218 KPIPFGPFISLGAI 231 >gi|159905108|ref|YP_001548770.1| peptidase A24A domain-containing protein [Methanococcus maripaludis C6] gi|159886601|gb|ABX01538.1| Peptidase A24A domain protein [Methanococcus maripaludis C6] Length = 346 Score = 34.1 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Query: 17 FCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 ++ A +D+ +IP+ V I+ML L + ++ + ++ I+ Sbjct: 17 LLILTATYTDIKERIIPHFVIILMLIVNLPVGYYF-FGFDAVVSFFATLILCLILGVG-- 73 Query: 77 AFNIMGGGDVKLLTSTA 93 MGGGDVK+ T+ + Sbjct: 74 ----MGGGDVKMFTALS 86 >gi|87299153|emb|CAJ76214.1| competence transcription factor C [Bacillus sp. Bt 35] Length = 186 Score = 34.1 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 35/101 (34%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IP+ + I L + + + ++ + + + C +GG Sbjct: 79 VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 138 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 GD+KLL+ G F+ + I R Sbjct: 139 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR 179 >gi|87299155|emb|CAJ76215.1| competence transcription factor C [Bacillus sp. Bt 49] Length = 186 Score = 34.1 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 35/101 (34%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IP+ + I L + + + ++ + + + C +GG Sbjct: 79 VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 138 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 GD+KLL+ G F+ + I R Sbjct: 139 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR 179 >gi|325845118|ref|ZP_08168429.1| bacterial peptidase A24, N-terminal domain protein [Turicibacter sp. HGF1] gi|325488860|gb|EGC91258.1| bacterial peptidase A24, N-terminal domain protein [Turicibacter sp. HGF1] Length = 241 Score = 34.1 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 5/111 (4%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVF---- 69 L+ +SD++ +I ++V + + L +D + +VG + Sbjct: 107 FLSMLIIITVSDIYYQLILDKVLLFWGAIIVFLYVLYPQLDLMSALVSAVVGFLTLYVIG 166 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120 ++ F +GGGD+KL G P+FLS I + +F+ Sbjct: 167 LLGQLLFKKEALGGGDIKLYAVVGFVLGIAPTFLSIFIASVIALSYILLFM 217 >gi|228951785|ref|ZP_04113884.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068955|ref|ZP_04202249.1| Peptidase A24A domain protein [Bacillus cereus F65185] gi|229078589|ref|ZP_04211147.1| Peptidase A24A domain protein [Bacillus cereus Rock4-2] gi|228704733|gb|EEL57161.1| Peptidase A24A domain protein [Bacillus cereus Rock4-2] gi|228714239|gb|EEL66120.1| Peptidase A24A domain protein [Bacillus cereus F65185] gi|228807907|gb|EEM54427.1| Peptidase A24A domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 249 Score = 34.1 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IP+ + I +L + + + ++ + + + C +GG Sbjct: 122 VTDYLYMLIPDCILISFAFLLILESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KLL+ G F+ + I R+ + Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKRI----------------EV 225 Query: 144 KNKIPYGIAISMGGL 158 + IP+G IS+G + Sbjct: 226 RKPIPFGPFISLGAI 240 >gi|188990483|ref|YP_001902493.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas campestris pv. campestris str. B100] gi|167732243|emb|CAP50435.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas campestris pv. campestris] Length = 287 Score = 34.1 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 21/154 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71 ++ LV + DL ++P+++++ ++ L+ + L M + L VG + Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192 Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + +++G +L L + Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILISSLVGAVLGSIWLFAKGRD 251 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 P IP+G +++ G + + Sbjct: 252 RATP---------------IPFGPYLAIAGWVVF 270 >gi|147828305|emb|CAN66482.1| hypothetical protein VITISV_015389 [Vitis vinifera] Length = 385 Score = 34.1 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 10/16 (62%), Positives = 15/16 (93%) Query: 146 KIPYGIAISMGGLISY 161 IPYG+A+S+GGL+S+ Sbjct: 222 GIPYGVALSVGGLLSF 237 >gi|289661859|ref|ZP_06483440.1| type II secretory pathway prepilin signal peptidase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 287 Score = 34.1 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 21/154 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71 ++ LV + DL ++P+++++ ++ L+ + L M + L VG + Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192 Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + +++G IL Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILISSLVGAILG---------- 241 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 V K IP+G +++ G + + Sbjct: 242 -----SAWLVAKGRDRATPIPFGPYLAVAGWVVF 270 >gi|195501439|ref|XP_002097796.1| GE24273 [Drosophila yakuba] gi|194183897|gb|EDW97508.1| GE24273 [Drosophila yakuba] Length = 1100 Score = 34.1 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40 K + +F I PFC+VF A D+ I N + +++ Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235 >gi|194900912|ref|XP_001979999.1| GG16891 [Drosophila erecta] gi|190651702|gb|EDV48957.1| GG16891 [Drosophila erecta] Length = 1097 Score = 34.1 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40 K + +F I PFC+VF A D+ I N + +++ Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235 >gi|116008008|ref|NP_001036711.1| guanylyl cyclase at 88E, isoform D [Drosophila melanogaster] gi|113194781|gb|ABI31167.1| guanylyl cyclase at 88E, isoform D [Drosophila melanogaster] Length = 1097 Score = 34.1 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40 K + +F I PFC+VF A D+ I N + +++ Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235 >gi|260718943|ref|YP_003225084.1| putative type II secretion protein EtpN [Escherichia coli O103:H2 str. 12009] gi|257762454|dbj|BAI33950.1| putative type II secretion protein EtpN [Escherichia coli O103:H2 str. 12009] Length = 277 Score = 34.1 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIIC 72 + L+ A+ D +AM+P+ +++ +L LL + G + E + + G + Sbjct: 138 LFIAMLLVLAVIDCRTAMLPDVLTLSLLWLGLLFSLQGGRVPLEEAVVGAVSGYLCLWGL 197 Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 + F F +G GD KL + W GW S L F ++ G I++V + V Sbjct: 198 YWLFRFVTGREGLGYGDFKLAAALGAWMGW-QVLPSVLLFASVSGLIITVLLRFVTATDF 256 Query: 129 HIPIFGMFVPKS 140 P+ Sbjct: 257 TRPLPFGPWLAL 268 >gi|209526138|ref|ZP_03274669.1| peptidase A24A domain protein [Arthrospira maxima CS-328] gi|209493394|gb|EDZ93718.1| peptidase A24A domain protein [Arthrospira maxima CS-328] Length = 271 Score = 34.1 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 15/134 (11%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF-- 76 LV +L D+ + +PN ++ L L LLG+ + L+VG++ ++ F Sbjct: 116 LVALSLIDIDTLTLPNPLTQSGLVVGLCFQGLLGLKTAGVIDQLMVGVLGAVLGLWLFEA 175 Query: 77 -------AFN--IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA----ILGGILSVFILTV 123 AF MG GD KL W GW ++ I G ++V IL Sbjct: 176 IAFLGSMAFGQTAMGAGDAKLAALMGAWLGWKMLLVASFIACGLGAFIGAGAMAVGILDR 235 Query: 124 RMITNHIPIFGMFV 137 R P + Sbjct: 236 RQPMPFGPFLAIAA 249 >gi|332160543|ref|YP_004297120.1| prepilin peptidase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664773|gb|ADZ41417.1| prepilin peptidase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863531|emb|CBX73647.1| type 4 prepilin-like proteins leader peptide-processing enzyme [Yersinia enterocolitica W22703] Length = 277 Score = 34.1 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 7/114 (6%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFII 71 L+ + ++ A D+ ++P+ +++ +L ++ L L + G + Sbjct: 130 LLFLWAIIALAFIDIEHYILPDCITLPLLWCGLVININNSFSPLSLSVLGAVTGYVFLWF 189 Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 + F + MG GD KL+ + WFG + FL ++ GI++ I+ Sbjct: 190 PYWIFKVFKNIDGMGYGDFKLMAALGAWFGVI--AIPFLVLLSSCFGIIAYIII 241 >gi|229177812|ref|ZP_04305185.1| Peptidase A24A domain protein [Bacillus cereus 172560W] gi|228605603|gb|EEK63051.1| Peptidase A24A domain protein [Bacillus cereus 172560W] Length = 249 Score = 34.1 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 40/115 (34%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IP+ + I L + + + ++ + + + C +GG Sbjct: 122 VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 GD+KLL+ G F+ + I R+ FG F+ Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKRIEVRKPLPFGPFIS 236 >gi|119716638|ref|YP_923603.1| peptidase A24A, prepilin type IV [Nocardioides sp. JS614] gi|119537299|gb|ABL81916.1| peptidase A24A, prepilin type IV [Nocardioides sp. JS614] Length = 242 Score = 34.1 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 16/159 (10%) Query: 20 VFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFN 79 V A+ DL + ++P V L + + A L G+ + + GL ++ FFA Sbjct: 95 VALAVVDLRTRLLPTVVVWPTLAATAVLAVLSGLLDDDQDALVRAGLGGVVVFALFFALW 154 Query: 80 I-----MGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFG 134 MG GDV+L + G+ + I GG L+ + + Sbjct: 155 WIHPAGMGYGDVRLSAVLGLALGYLGWAE---LAIGIYGGFLAFSV--------PGLLLA 203 Query: 135 MFVPKSFLMKNKIPYGIAISMGGLISYPDSYLFKVALMG 173 + +++ P+G + G L L+ G Sbjct: 204 LLRRDRAILRAAYPFGPFLLAGALAGVVLGPLWTGLASG 242 >gi|293375536|ref|ZP_06621810.1| bacterial Peptidase A24 N-terminal domain protein [Turicibacter sanguinis PC909] gi|292645753|gb|EFF63789.1| bacterial Peptidase A24 N-terminal domain protein [Turicibacter sanguinis PC909] Length = 252 Score = 34.1 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 5/103 (4%) Query: 15 PPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLL-GMDYELIALHLLVGLIVF---- 69 L+ +SD++ +I ++V + + L +D + +VG + Sbjct: 107 FLSMLIIITVSDIYYQLILDKVLLFWGAIIVFLYVLYPQLDLMSALVSAVVGFLTLYVIG 166 Query: 70 IICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112 ++ F +GGGD+KL G P+FLS I Sbjct: 167 LLGQLLFKKEALGGGDIKLYAVVGFVLGIAPTFLSIFIASVIA 209 >gi|260587083|ref|ZP_05852996.1| peptidase A24A, prepilin type IV [Blautia hansenii DSM 20583] gi|260542573|gb|EEX23142.1| peptidase A24A, prepilin type IV [Blautia hansenii DSM 20583] Length = 152 Score = 34.1 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 4/91 (4%) Query: 35 RVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC---FCFFAFNIMGGGDVKLLTS 91 RV + F LT F M IA L GL + + C F F F ++G GD+KL + Sbjct: 7 RVVNGFIVVFFLTGFFWQMGANGIAGTLSGGLGLLLPCVLLFPLFYFRMLGAGDIKLFSG 66 Query: 92 TAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 ++ G T + + LGG+LS L Sbjct: 67 LGIFLGVT-AVFKLILCSLFLGGLLSFAFLI 96 >gi|21232531|ref|NP_638448.1| type IV pre-pilin leader peptidase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767384|ref|YP_242146.1| type IV pre-pilin leader peptidase [Xanthomonas campestris pv. campestris str. 8004] gi|7674104|sp|Q56763|LEP4_XANCP RecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; Includes: RecName: Full=Leader peptidase; AltName: Full=Prepilin peptidase; Includes: RecName: Full=N-methyltransferase gi|529683|gb|AAC43571.1| XpsO [Xanthomonas campestris] gi|21114323|gb|AAM42372.1| type IV pre-pilin leader peptidase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|37784401|gb|AAP43033.1| PilD [Xanthomonas campestris pv. campestris] gi|66572716|gb|AAY48126.1| type IV pre-pilin leader peptidase [Xanthomonas campestris pv. campestris str. 8004] gi|1586804|prf||2204377A type IV pre-pilin leader peptidase Length = 287 Score = 34.1 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 21/154 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71 ++ LV + DL ++P+++++ ++ L+ + L M + L VG + Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192 Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + +++G +L L + Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILISSLVGAVLGSIWLFAKGRD 251 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 P IP+G +++ G + + Sbjct: 252 RATP---------------IPFGPYLAIAGWVVF 270 >gi|17228810|ref|NP_485358.1| type 4 prepilin peptidase [Nostoc sp. PCC 7120] gi|17130662|dbj|BAB73272.1| type 4 prepilin peptidase [Nostoc sp. PCC 7120] Length = 269 Score = 34.1 bits (77), Expect = 8.5, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 30/157 (19%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGM----DYELIALHLLVGLIVFIICFC 74 L+ +L DL + +PN ++ L L+ ++G + HL++G++ ++ Sbjct: 114 LLALSLIDLDTMTLPNPLTKSGLVLGLVFQMIVGYAADPTLSGLIRHLMMGIVGAVLGLW 173 Query: 75 FFAF----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 F MG GD KL W GW L+ L + + IL + Sbjct: 174 LFEAIALLGVVFQKEAMGAGDAKLAAMMGAWLGWRYLLLAGLIACTLGALVGVGAILLSK 233 Query: 125 MITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 KIP+G ++ G LI+ Sbjct: 234 RKWGQ----------------KIPFGPFLASGALITL 254 >gi|251788930|ref|YP_003003651.1| Prepilin peptidase [Dickeya zeae Ech1591] gi|247537551|gb|ACT06172.1| Prepilin peptidase [Dickeya zeae Ech1591] Length = 283 Score = 34.1 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 18 CLVFAALSDLFSAMIPNRVSIVML-GSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFF 76 L+ A D + ++P+ +++ +L G L + E + + G + + + F Sbjct: 141 ILLALAAIDARTQLLPDVMTLPLLWGGLLFNLADTFVPLEQAVVGAVAGYLSLWLIYWAF 200 Query: 77 AF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPI 132 +G GD KLL + W GW + + + ++ G ++ + + P+ Sbjct: 201 RLLSGREALGHGDFKLLAALGAWLGW-QALPNLVLIASLTGLTATLLWRRIHRLNMQQPL 259 Query: 133 F 133 Sbjct: 260 A 260 >gi|195940440|ref|ZP_03085822.1| hypothetical protein EscherichcoliO157_29285 [Escherichia coli O157:H7 str. EC4024] Length = 211 Score = 34.1 bits (77), Expect = 8.6, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 20/145 (13%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 + + ++ S + ++ L A DL S ++P + +T G+ Y+ Sbjct: 59 LNQLSLIQSIIVIVFYAFLTLMACIDLLSFLLP--------RLYTVTFIFSGLLYQTWNN 110 Query: 61 HLLVGLIVFIICFCFFAFNIM-----------GGGDVKLLTSTAVWFGWTPSFLSFLFFV 109 ++L GL ++ F F + G GDV L+ T VWF TP + F+ Sbjct: 111 NILSGLFCAMLMFFIMLFVRLYFAYKNGTESFGMGDVLLIAGTGVWFP-TPEIACSIVFI 169 Query: 110 AILGGILSVFILTVRMITNHIPIFG 134 A++GGI+ + + +IP Sbjct: 170 AVIGGIIFFTLGGLNKQKKYIPFGP 194 >gi|124248382|gb|ABM92811.1| IP15889p [Drosophila melanogaster] Length = 1032 Score = 34.1 bits (77), Expect = 8.7, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40 K + +F I PFC+VF A D+ I N + +++ Sbjct: 134 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 170 >gi|291285884|ref|YP_003502701.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615] gi|290765757|gb|ADD59717.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615] Length = 277 Score = 34.1 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Query: 14 IPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG-MDYELIALHLLVGLIVFIIC 72 + L+ A+ D +AM+P+ +++ +L LL + G + E + + G + Sbjct: 138 LFIAMLLVLAVIDCRTAMLPDVLTLSLLWLGLLFSLQGGSVPLEEAVVGAVSGYLCLWGL 197 Query: 73 FCFFAF----NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITN 128 + F F +G GD KL + W GW S L F ++ G I++V + V Sbjct: 198 YWLFRFVTGREGLGYGDFKLAAALGAWMGW-QVLPSVLLFASVSGLIITVLLRFVTATDF 256 Query: 129 HIPIFGMFVPKS 140 P+ Sbjct: 257 TRPLPFGPWLAL 268 >gi|238928097|ref|ZP_04659857.1| possible prepilin peptidase [Selenomonas flueggei ATCC 43531] gi|238884057|gb|EEQ47695.1| possible prepilin peptidase [Selenomonas flueggei ATCC 43531] Length = 192 Score = 34.1 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 3/92 (3%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 ++ L++ + DL M+ + +++ L+ + + + L+ V C Sbjct: 49 MLFTAVLLWLSYLDLRDGMLYDCITLPFALLGLMASGVGSISDALLG---GALCGVLFYC 105 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLS 104 A +GGGDVK +W GW + ++ Sbjct: 106 LYIAARGGLGGGDVKFAVGLGLWLGWEAAIIA 137 >gi|229149606|ref|ZP_04277837.1| Peptidase A24A domain protein [Bacillus cereus m1550] gi|228633816|gb|EEK90414.1| Peptidase A24A domain protein [Bacillus cereus m1550] Length = 249 Score = 34.1 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D F +IP+ + I +L + + + ++ + + + C +GG Sbjct: 122 VTDYFYMLIPDCILISFAVLLILESIFVQLVTWTDSIVGSGVIFLLLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVP 138 GD+KLL+ G F+ + I+ R+ FG F+ Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIVLKRIEVGKPIPFGPFIS 236 >gi|195570766|ref|XP_002103375.1| GD18990 [Drosophila simulans] gi|194199302|gb|EDX12878.1| GD18990 [Drosophila simulans] Length = 1092 Score = 34.1 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40 K + +F I PFC+VF A D+ I N + +++ Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235 >gi|255020186|ref|ZP_05292255.1| Leader peptidase (Prepilin peptidase) / N-methyltransferase [Acidithiobacillus caldus ATCC 51756] gi|254970328|gb|EET27821.1| Leader peptidase (Prepilin peptidase) / N-methyltransferase [Acidithiobacillus caldus ATCC 51756] Length = 261 Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 11/133 (8%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVS-------IVMLGSFLLTAFLLGMDYELIALHLLVG 65 L + L+ DL + ++P+R++ +++ G L + E L +L+G Sbjct: 103 LCFAWALLALTWIDLETQLLPDRITKPGILAGLLLNGLGLWWPGIALASPESALLGVLLG 162 Query: 66 LIVF---IICFCFFAFN-IMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFIL 121 V + +F MGGGD+K L W GW ++ + G + ++++L Sbjct: 163 YGVLWLLAAGYFYFTQRPGMGGGDLKFLGMIGAWLGWQGMAMTLFIAAIVGGFVATLYLL 222 Query: 122 TVRMITNHIPIFG 134 + IP Sbjct: 223 LGKGRDYAIPFGP 235 >gi|87299147|emb|CAJ76211.1| competence transcription factor C [Bacillus sp. Ob 11] Length = 185 Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 37/107 (34%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IP+ + I L + + + ++ + + + C +GG Sbjct: 79 VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 138 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHI 130 GD+KLL+ G F+ + I R+ + Sbjct: 139 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKRIEVRSL 185 >gi|190575613|ref|YP_001973458.1| putative type 4 prepilin-like proteins leader peptide processing enzyme [Stenotrophomonas maltophilia K279a] gi|190013535|emb|CAQ47170.1| putative type 4 prepilin-like proteins leader peptide processing enzyme [Stenotrophomonas maltophilia K279a] Length = 287 Score = 33.7 bits (76), Expect = 9.1, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 6/126 (4%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71 ++ L+ + DL + ++P+++++ ++ L+ + L M + + VG + Sbjct: 133 IVLTCFLIALSGIDLRTQLLPDQLTLPLMWLGLIGSIDNLYMPAKPALVGAAVGYLSLWT 192 Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + ++LG I+ L R Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGVLPIILLSSVLGAIIGSIWLYSRGRD 251 Query: 128 NHIPIF 133 PI Sbjct: 252 RATPIP 257 >gi|291557187|emb|CBL34304.1| Type IV leader peptidase family [Eubacterium siraeum V10Sc8a] Length = 138 Score = 33.7 bits (76), Expect = 9.1, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 13/112 (11%) Query: 1 MKESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIAL 60 M S M F+A+ + L ++ D+ + IPN +S +L + L L + Sbjct: 1 MNGSVMQFAAITI----LLGIGSVMDIKTREIPNWISAAVLITAALNFNLANL------W 50 Query: 61 HLLVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAIL 112 ++V +I F + A +GGGDVKL+ + +V G SF LF + Sbjct: 51 GIIVAVIFFSVAL---ATGKIGGGDVKLIAALSVVCGLWSSFALLLFAQTAM 99 >gi|37680196|ref|NP_934805.1| hypothetical protein VV2012 [Vibrio vulnificus YJ016] gi|37198943|dbj|BAC94776.1| hypothetical protein [Vibrio vulnificus YJ016] Length = 143 Score = 33.7 bits (76), Expect = 9.1, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 15/131 (11%) Query: 25 SDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGG 84 SD+ I N V++ F+ T + + + L L+ +I + ++G G Sbjct: 21 SDVLKRKIYNANLAVLV--FVSTYYRHQLPDAMWLDATLYALLALLIGMLLWQRRLLGAG 78 Query: 85 DVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLMK 144 DVKL VW + P++ + A+ G+L++ + + S + Sbjct: 79 DVKL-AVICVWMVF-PNWGELILLSALGAGVLAI-----------WQLARQRLAMSNNHQ 125 Query: 145 NKIPYGIAISM 155 IP G++IS Sbjct: 126 GTIPLGVSISA 136 >gi|62484298|ref|NP_650424.3| guanylyl cyclase at 88E, isoform C [Drosophila melanogaster] gi|75016128|sp|Q8INF0|GCY8E_DROME RecName: Full=Soluble guanylate cyclase 88E gi|34980252|gb|AAQ84039.1| guanylyl cyclase long variant [Drosophila melanogaster] gi|61679338|gb|AAN13628.3| guanylyl cyclase at 88E, isoform C [Drosophila melanogaster] Length = 947 Score = 33.7 bits (76), Expect = 9.1, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40 K + +F I PFC+VF A D+ I N + +++ Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235 >gi|291563704|emb|CBL42520.1| Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [butyrate-producing bacterium SS3/4] Length = 258 Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 29/160 (18%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGL 66 V S ++ L+ +L+DL +IP+R+ I FL+TA L + I L +GL Sbjct: 105 VMSLRGILLTVVLMILSLTDLHGWIIPDRLQIAGCVIFLVTALFLPDPIQRIFGGLFLGL 164 Query: 67 I-------VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 I V ++ +GGGD+KL T ++ L +L + G + Sbjct: 165 ILGGGMLLVSLVFDKLTGKESLGGGDIKLFFMTGLYLSSAWEILFYLILSCLFGLGFA-- 222 Query: 120 ILTVRMITNHIPIFGMFVPKSFLMKNKIPYGIAISMGGLI 159 SF + ++P+G AI+ I Sbjct: 223 --------------------SFRKEKRVPFGPAIAAACFI 242 >gi|34980250|gb|AAQ84038.1| guanylyl cyclase short variant [Drosophila melanogaster] Length = 941 Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40 K + +F I PFC+VF A D+ I N + +++ Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235 >gi|87299159|emb|CAJ76217.1| competence transcription factor C [Bacillus sp. Ob 14] Length = 186 Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 35/101 (34%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IP+ + I L + + + ++ + + + C +GG Sbjct: 79 VTDYLYMLIPDCILISFAFLLTLESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 138 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVR 124 GD+KLL+ G F+ + I R Sbjct: 139 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR 179 >gi|229189487|ref|ZP_04316503.1| Peptidase A24A domain protein [Bacillus cereus ATCC 10876] gi|228593932|gb|EEK51735.1| Peptidase A24A domain protein [Bacillus cereus ATCC 10876] Length = 249 Score = 33.7 bits (76), Expect = 9.3, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 16/135 (11%) Query: 24 LSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGG 83 ++D +IP+ + I +L + + + ++ + + + C +GG Sbjct: 122 VTDYLYMLIPDCILISFAFLLILESVFVQLVTWTDSIAGSGVIFILLYCMQKIYPEGLGG 181 Query: 84 GDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFVPKSFLM 143 GD+KLL+ G F+ + I R + Sbjct: 182 GDIKLLSLLGFIVGVKGVFIVLFLASCFSLCFFGIGIGLKR----------------IEV 225 Query: 144 KNKIPYGIAISMGGL 158 + IP+G IS+G + Sbjct: 226 RKPIPFGPFISLGAI 240 >gi|331082854|ref|ZP_08331976.1| hypothetical protein HMPREF0992_00900 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400183|gb|EGG79832.1| hypothetical protein HMPREF0992_00900 [Lachnospiraceae bacterium 6_1_63FAA] Length = 169 Score = 33.7 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 4/91 (4%) Query: 35 RVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC---FCFFAFNIMGGGDVKLLTS 91 RV + F LT F M IA L GL + + C F F F ++G GD+KL + Sbjct: 24 RVVNGFIVVFFLTGFFWQMGENGIAGTLSGGLGLLLPCVLLFPLFYFRMLGAGDIKLFSG 83 Query: 92 TAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 ++ G T + + LGG+LS L Sbjct: 84 LGIFLGVT-AVFKLILCSLFLGGLLSFAFLI 113 >gi|62484477|ref|NP_731974.3| guanylyl cyclase at 88E, isoform A [Drosophila melanogaster] gi|61679339|gb|AAF55135.4| guanylyl cyclase at 88E, isoform A [Drosophila melanogaster] Length = 940 Score = 33.7 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40 K + +F I PFC+VF A D+ I N + +++ Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235 >gi|284053732|ref|ZP_06383942.1| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Arthrospira platensis str. Paraca] Length = 271 Score = 33.7 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 15/134 (11%) Query: 19 LVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAF 78 LV +L D+ + +PN ++ L L LLG+ + L+VG++ ++ F Sbjct: 116 LVALSLIDIDTLTLPNPLTQSGLVLGLCFQGLLGLKTAGVIDQLMVGILGAVLGLWLFEA 175 Query: 79 -----------NIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVA----ILGGILSVFILTV 123 MG GD KL W GW ++ I G ++V IL Sbjct: 176 IAFLGSMAFGQTAMGAGDAKLAALMGAWLGWKMLLVASFIACGLGAFIGAGAMAVGILDR 235 Query: 124 RMITNHIPIFGMFV 137 R P + Sbjct: 236 RQPMPFGPFLAIAA 249 >gi|78048911|ref|YP_365086.1| type II secretory pathway prepilin signal peptidase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325928499|ref|ZP_08189690.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas perforans 91-118] gi|78037341|emb|CAJ25086.1| type II secretory pathway prepilin signal peptidase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541216|gb|EGD12767.1| Type II secretory pathway prepilin signal peptidase [Xanthomonas perforans 91-118] Length = 287 Score = 33.7 bits (76), Expect = 9.4, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 21/154 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71 ++ LV + DL ++P+++++ ++ L+ + L M + L VG + Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192 Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + +++G IL L Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILISSLVGAILGSIWL------ 245 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 V K IP+G +++ G + + Sbjct: 246 ---------VAKGRDRATPIPFGPYLAIAGWVVF 270 >gi|195328847|ref|XP_002031123.1| GM24200 [Drosophila sechellia] gi|194120066|gb|EDW42109.1| GM24200 [Drosophila sechellia] Length = 1094 Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 2 KESKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVM 40 K + +F I PFC+VF A D+ I N + +++ Sbjct: 199 KHLPISAHVLFEIFPFCMVFGA--DMVVRSIGNSLMVIL 235 >gi|312136405|ref|YP_004003742.1| oligosaccharyl transferase stt3 subunit [Methanothermus fervidus DSM 2088] gi|311224124|gb|ADP76980.1| Oligosaccharyl transferase STT3 subunit [Methanothermus fervidus DSM 2088] Length = 854 Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 5/111 (4%) Query: 9 SAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIV 68 + ++ P +++ + + RV + + + L + + +L V +V Sbjct: 178 AMFNVLFPILIMWFFAESIVAKTFKRRVIFAVATAISI--ILFSLSWVGYVFYLAVIFVV 235 Query: 69 FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVF 119 ++ F F + G V+ ++ W L+ L I GGIL++ Sbjct: 236 ALVYFGLRYF--IERGKVEYVSKLD-WIKGQRELLALLIVAIICGGILTIG 283 >gi|294624335|ref|ZP_06703035.1| type II secretory pathway prepilin signal peptidase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601367|gb|EFF45404.1| type II secretory pathway prepilin signal peptidase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 287 Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 21/154 (13%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAF-LLGMDYELIALHLLVGLIVFII 71 ++ LV + DL ++P+++++ ++ L+ + L M + L VG + Sbjct: 133 IVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPALLGAAVGYVSLWT 192 Query: 72 CFCFFA----FNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMIT 127 + F MG GD KLL + W G L + +++G IL L Sbjct: 193 VWWLFKQLTGKEGMGHGDFKLLAALGAWCGL-KGILPIILISSLVGAILGSIWL------ 245 Query: 128 NHIPIFGMFVPKSFLMKNKIPYGIAISMGGLISY 161 V K IP+G +++ G + + Sbjct: 246 ---------VAKGRDRATPIPFGPYLAIAGWVVF 270 >gi|78045067|ref|YP_359490.1| type IV prepilin peptidase [Carboxydothermus hydrogenoformans Z-2901] gi|77997182|gb|ABB16081.1| type IV prepilin peptidase [Carboxydothermus hydrogenoformans Z-2901] Length = 249 Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 1/108 (0%) Query: 26 DLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIICFCFFAFNIMGGGD 85 DL + ++P++++ + + +L + + ++ + + MGGGD Sbjct: 114 DLENFLLPDKLTYPLFLAGVLINLITRELSWKSLIFGVITGFGLLFLLALISRGGMGGGD 173 Query: 86 VKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIF 133 +KL + G+ P L LF GG+ + +L + + Sbjct: 174 IKLAAGLGAFLGF-PLILETLFLAFFFGGLTGIILLLTKKKARGDMVP 220 >gi|157372474|ref|YP_001480463.1| prepilin peptidase [Serratia proteamaculans 568] gi|157324238|gb|ABV43335.1| Prepilin peptidase [Serratia proteamaculans 568] Length = 287 Score = 33.7 bits (76), Expect = 9.7, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 7/96 (7%) Query: 10 AVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVF 69 + ++ L+ A+ D ++P+ +++ +L L +L D+ A+ L Sbjct: 142 VMMMVSSALLLSLAIIDFRHQILPDILTLTLLWCGLFWHWLEQRDFLGDAV-LGAIAGYL 200 Query: 70 IICFCFFAFNIMGG------GDVKLLTSTAVWFGWT 99 ++ +++ +M G GD KLL + W GW Sbjct: 201 VLWLLYWSLRLMTGKEGLGYGDFKLLAALGAWLGWQ 236 >gi|219669543|ref|YP_002459978.1| peptidase A24A domain protein [Desulfitobacterium hafniense DCB-2] gi|219539803|gb|ACL21542.1| peptidase A24A domain protein [Desulfitobacterium hafniense DCB-2] Length = 253 Score = 33.7 bits (76), Expect = 9.8, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 8/141 (5%) Query: 7 VFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLG---MDYELIALHLL 63 + + L+ A+ D + +P+ ++ +LG ++ FLL +E +A L Sbjct: 100 LELGINFYFISVLLVLAVIDWDTYRLPDVFTLPLLGVGIVAGFLLPQGPSGWESLATALG 159 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 VG + ++I MG GD+KL+ + + G+ + ++ +F + G I + +L+ Sbjct: 160 VGGVFWMITRL--YPEGMGLGDIKLIAGLSAFLGFPEALIA-VFIASFTGSIGGLIMLSF 216 Query: 124 --RMITNHIPIFGMFVPKSFL 142 R IP V ++ Sbjct: 217 EKRSFREQIPFGPYLVLGGWI 237 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.322 0.151 0.449 Lambda K H 0.267 0.0462 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,497,201,673 Number of Sequences: 14124377 Number of extensions: 142627571 Number of successful extensions: 1253962 Number of sequences better than 10.0: 10000 Number of HSP's better than 10.0 without gapping: 1422 Number of HSP's successfully gapped in prelim test: 10408 Number of HSP's that attempted gapping in prelim test: 1242419 Number of HSP's gapped (non-prelim): 18068 length of query: 176 length of database: 4,842,793,630 effective HSP length: 129 effective length of query: 47 effective length of database: 3,020,748,997 effective search space: 141975202859 effective search space used: 141975202859 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (20.9 bits) S2: 77 (34.1 bits)