RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type
IV [Candidatus Liberibacter asiaticus str. psy62]
         (176 letters)



>gnl|CDD|34567 COG4960, CpaA, Flp pilus assembly protein, protease CpaA
           [Posttranslational modification, protein turnover,
           chaperones / Intracellular trafficking and secretion].
          Length = 168

 Score = 91.4 bits (227), Expect = 1e-19
 Identities = 65/169 (38%), Positives = 92/169 (54%), Gaps = 2/169 (1%)

Query: 4   SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63
             M+ +++FLI P  LVFAA SD+ S  IPNR+ +V+L +F + A + GM      L L 
Sbjct: 1   MDMIIASLFLIFPVLLVFAAYSDIRSRTIPNRLVLVLLLAFAILAPVAGMPLAGAGLSLA 60

Query: 64  VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123
              I   + F  FA  +MGGGDVKLL    +W G   + L FL + ++ GG+L+V IL +
Sbjct: 61  GAAIALALGFGLFALGVMGGGDVKLLAVLGLWLGPLQA-LYFLLYTSVAGGVLTVAILLL 119

Query: 124 RMITNHIPIFGMFVPKSFLMKNK-IPYGIAISMGGLISYPDSYLFKVAL 171
           R +      F     +  L     IPYG+AI++G L + P S L   AL
Sbjct: 120 RRVDLSAAAFKAPWLRRLLTPKGSIPYGVAIALGALAALPISPLMVSAL 168


>gnl|CDD|144901 pfam01478, Peptidase_A24, Type IV leader peptidase family.
           Peptidase A24, or the prepilin peptidase as it is also
           known, processes the N-terminus of the prepilins. The
           processing is essential for the correct formation of the
           pseudopili of type IV bacterial protein secretion. The
           enzyme is found across eubacteria and archaea.
          Length = 103

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 13  LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72
           L+    L+  +L DL + ++PNR+++ +L   LL A LLG+    +   LL  L  F++ 
Sbjct: 1   LLLLSLLLLLSLIDLRTRLLPNRLTLPLLWLGLLFALLLGLLS--LLDALLGALAGFLLL 58

Query: 73  FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118
           F  +    MGGGDVKLL +   W GW    L  L   ++LGG+ ++
Sbjct: 59  FLLYLKEGMGGGDVKLLAALGAWLGWQALLL-LLLLASLLGGLYAL 103


>gnl|CDD|37231 KOG2020, KOG2020, KOG2020, Nuclear transport receptor CRM1/MSN5
           (importin beta superfamily) [Nuclear structure,
           Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 1041

 Score = 27.3 bits (60), Expect = 2.6
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 21  FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV--GLIVFIICFCFFAF 78
            A +       IP  + ++ +     T  ++  D++    H L    L+  ++ FCF AF
Sbjct: 790 NATIVPKLGEFIPAELPLINIAVLECTLEMINKDFQEYPEHRLNFLLLLEALLLFCFPAF 849

Query: 79  NIMGGGDVKLLTSTAVW 95
           + +    VKL++ + VW
Sbjct: 850 SELPADQVKLVSDSIVW 866


>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
           permease and ATPase components [General function
           prediction only].
          Length = 604

 Score = 27.2 bits (60), Expect = 2.6
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 85  DVKLLTSTAVWF--GWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137
           D++  T T +    G   S +S + F  IL  +      T+   +  IP + ++ 
Sbjct: 157 DIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWA 211


>gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase
           (glycosyltransferases) [Cell wall/membrane/envelope
           biogenesis].
          Length = 862

 Score = 26.9 bits (59), Expect = 3.6
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 18/131 (13%)

Query: 12  FLIPPFCLVFAALSDLFSAMIPNRVSIVM-------LGSF--LLTAFLLGMDYELIALHL 62
           F +  F L+ +     +++ + N   I++          F  LL A   G  Y L     
Sbjct: 640 FSMANFVLLLSFRGRSWNSTVHNLFPILLFILLCLTFSLFMQLLGARPRGNVYMLAMSLY 699

Query: 63  LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122
            V +I  ++C    A   +               G+    +S L F  +  G+  V+IL 
Sbjct: 700 SVLIIYSLLCAGVLAPASL-------FEGLLGTSGFIAIIISPLEFHMLTPGV--VYILL 750

Query: 123 VRMITNHIPIF 133
           +      +PI+
Sbjct: 751 LPSWYFVLPIY 761


>gnl|CDD|36528 KOG1314, KOG1314, KOG1314, DHHC-type Zn-finger protein [General
           function prediction only].
          Length = 414

 Score = 26.9 bits (59), Expect = 3.6
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 19/78 (24%)

Query: 97  GWT--PSFLSFLFFVAILGGILSVFILTVRMITN------------HIPIFGMFVPKSFL 142
           GW     FL FL F +I+G I    IL                   H+PI   F   S +
Sbjct: 130 GWANHAYFLRFLLF-SIVGCIHGTIILVCAQYRGIYFRWYIKYGLRHLPIV-FFTLSSLI 187

Query: 143 MKNKIPYGIAISMGGLIS 160
               + + + +++G +++
Sbjct: 188 A---LVFSLGLAIGVVLA 202


>gnl|CDD|36576 KOG1362, KOG1362, KOG1362, Choline transporter-like protein [Lipid
           transport and metabolism].
          Length = 577

 Score = 26.0 bits (57), Expect = 6.1
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 32  IPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLL 89
           I + + I ++ S + T  L  +      I + L++  ++  I FC+F + I+    V + 
Sbjct: 152 ILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIG 211

Query: 90  TSTAVWFGWTPSFLSFLFFVAI-LGGILSVFILTVRMITNHIPI 132
            +++  F    + L+ L  V I L  I  V +L +  +   IP+
Sbjct: 212 FTSS-LFVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPL 254


>gnl|CDD|37513 KOG2302, KOG2302, KOG2302, T-type voltage-gated Ca2+ channel,
            pore-forming alpha1I subunit [Inorganic ion transport and
            metabolism, Signal transduction mechanisms].
          Length = 1956

 Score = 25.4 bits (55), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 64   VGLIVFIICFCFFAFNIMG 82
            +G IV I C  F  F I+G
Sbjct: 1260 IGNIVLICCAFFIIFGILG 1278


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.337    0.149    0.463 

Gapped
Lambda     K      H
   0.267   0.0746    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,262,014
Number of extensions: 133346
Number of successful extensions: 1234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1172
Number of HSP's successfully gapped: 321
Length of query: 176
Length of database: 6,263,737
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,383,754
Effective search space: 390154106
Effective search space used: 390154106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 54 (24.5 bits)