RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type IV [Candidatus Liberibacter asiaticus str. psy62] (176 letters) >gnl|CDD|34567 COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]. Length = 168 Score = 91.4 bits (227), Expect = 1e-19 Identities = 65/169 (38%), Positives = 92/169 (54%), Gaps = 2/169 (1%) Query: 4 SKMVFSAVFLIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLL 63 M+ +++FLI P LVFAA SD+ S IPNR+ +V+L +F + A + GM L L Sbjct: 1 MDMIIASLFLIFPVLLVFAAYSDIRSRTIPNRLVLVLLLAFAILAPVAGMPLAGAGLSLA 60 Query: 64 VGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILTV 123 I + F FA +MGGGDVKLL +W G + L FL + ++ GG+L+V IL + Sbjct: 61 GAAIALALGFGLFALGVMGGGDVKLLAVLGLWLGPLQA-LYFLLYTSVAGGVLTVAILLL 119 Query: 124 RMITNHIPIFGMFVPKSFLMKNK-IPYGIAISMGGLISYPDSYLFKVAL 171 R + F + L IPYG+AI++G L + P S L AL Sbjct: 120 RRVDLSAAAFKAPWLRRLLTPKGSIPYGVAIALGALAALPISPLMVSAL 168 >gnl|CDD|144901 pfam01478, Peptidase_A24, Type IV leader peptidase family. Peptidase A24, or the prepilin peptidase as it is also known, processes the N-terminus of the prepilins. The processing is essential for the correct formation of the pseudopili of type IV bacterial protein secretion. The enzyme is found across eubacteria and archaea. Length = 103 Score = 44.1 bits (105), Expect = 2e-05 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 3/106 (2%) Query: 13 LIPPFCLVFAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLVGLIVFIIC 72 L+ L+ +L DL + ++PNR+++ +L LL A LLG+ + LL L F++ Sbjct: 1 LLLLSLLLLLSLIDLRTRLLPNRLTLPLLWLGLLFALLLGLLS--LLDALLGALAGFLLL 58 Query: 73 FCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSV 118 F + MGGGDVKLL + W GW L L ++LGG+ ++ Sbjct: 59 FLLYLKEGMGGGDVKLLAALGAWLGWQALLL-LLLLASLLGGLYAL 103 >gnl|CDD|37231 KOG2020, KOG2020, KOG2020, Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure, Intracellular trafficking, secretion, and vesicular transport]. Length = 1041 Score = 27.3 bits (60), Expect = 2.6 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 21 FAALSDLFSAMIPNRVSIVMLGSFLLTAFLLGMDYELIALHLLV--GLIVFIICFCFFAF 78 A + IP + ++ + T ++ D++ H L L+ ++ FCF AF Sbjct: 790 NATIVPKLGEFIPAELPLINIAVLECTLEMINKDFQEYPEHRLNFLLLLEALLLFCFPAF 849 Query: 79 NIMGGGDVKLLTSTAVW 95 + + VKL++ + VW Sbjct: 850 SELPADQVKLVSDSIVW 866 >gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]. Length = 604 Score = 27.2 bits (60), Expect = 2.6 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 85 DVKLLTSTAVWF--GWTPSFLSFLFFVAILGGILSVFILTVRMITNHIPIFGMFV 137 D++ T T + G S +S + F IL + T+ + IP + ++ Sbjct: 157 DIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWA 211 >gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]. Length = 862 Score = 26.9 bits (59), Expect = 3.6 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 18/131 (13%) Query: 12 FLIPPFCLVFAALSDLFSAMIPNRVSIVM-------LGSF--LLTAFLLGMDYELIALHL 62 F + F L+ + +++ + N I++ F LL A G Y L Sbjct: 640 FSMANFVLLLSFRGRSWNSTVHNLFPILLFILLCLTFSLFMQLLGARPRGNVYMLAMSLY 699 Query: 63 LVGLIVFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFILT 122 V +I ++C A + G+ +S L F + G+ V+IL Sbjct: 700 SVLIIYSLLCAGVLAPASL-------FEGLLGTSGFIAIIISPLEFHMLTPGV--VYILL 750 Query: 123 VRMITNHIPIF 133 + +PI+ Sbjct: 751 LPSWYFVLPIY 761 >gnl|CDD|36528 KOG1314, KOG1314, KOG1314, DHHC-type Zn-finger protein [General function prediction only]. Length = 414 Score = 26.9 bits (59), Expect = 3.6 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 19/78 (24%) Query: 97 GWT--PSFLSFLFFVAILGGILSVFILTVRMITN------------HIPIFGMFVPKSFL 142 GW FL FL F +I+G I IL H+PI F S + Sbjct: 130 GWANHAYFLRFLLF-SIVGCIHGTIILVCAQYRGIYFRWYIKYGLRHLPIV-FFTLSSLI 187 Query: 143 MKNKIPYGIAISMGGLIS 160 + + + +++G +++ Sbjct: 188 A---LVFSLGLAIGVVLA 202 >gnl|CDD|36576 KOG1362, KOG1362, KOG1362, Choline transporter-like protein [Lipid transport and metabolism]. Length = 577 Score = 26.0 bits (57), Expect = 6.1 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 4/104 (3%) Query: 32 IPNRVSIVMLGSFLLTAFLLGMD--YELIALHLLVGLIVFIICFCFFAFNIMGGGDVKLL 89 I + + I ++ S + T L + I + L++ ++ I FC+F + I+ V + Sbjct: 152 ILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIG 211 Query: 90 TSTAVWFGWTPSFLSFLFFVAI-LGGILSVFILTVRMITNHIPI 132 +++ F + L+ L V I L I V +L + + IP+ Sbjct: 212 FTSS-LFVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPL 254 >gnl|CDD|37513 KOG2302, KOG2302, KOG2302, T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism, Signal transduction mechanisms]. Length = 1956 Score = 25.4 bits (55), Expect = 7.8 Identities = 9/19 (47%), Positives = 11/19 (57%) Query: 64 VGLIVFIICFCFFAFNIMG 82 +G IV I C F F I+G Sbjct: 1260 IGNIVLICCAFFIIFGILG 1278 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.337 0.149 0.463 Gapped Lambda K H 0.267 0.0746 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,262,014 Number of extensions: 133346 Number of successful extensions: 1234 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1172 Number of HSP's successfully gapped: 321 Length of query: 176 Length of database: 6,263,737 Length adjustment: 87 Effective length of query: 89 Effective length of database: 4,383,754 Effective search space: 390154106 Effective search space used: 390154106 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 54 (24.5 bits)