RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780729|ref|YP_003065142.1| peptidase A24A prepilin type
IV [Candidatus Liberibacter asiaticus str. psy62]
         (176 letters)



>d2pkgc1 g.92.1.1 (C:91-170) Small t antigen, ST-AG {Simian virus 40
           [TaxId: 10633]}
          Length = 80

 Score = 26.0 bits (57), Expect = 1.8
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 14/46 (30%)

Query: 68  VFIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILG 113
           V++ C+CF  F               +WFG      + L +  I+G
Sbjct: 44  VWVDCYCFDCF--------------RMWFGLDLCEGTLLLWCDIIG 75


>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
           {Human (Homo sapiens), E2 J2 [TaxId: 9606]}
          Length = 157

 Score = 24.3 bits (52), Expect = 5.8
 Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 4/52 (7%)

Query: 69  FIICFCFFAFNIMGGGDVKLLTSTAVWFGWTPSFLSFLFFVAILGGILSVFI 120
             I              + L  +      W P+         IL G+LS  +
Sbjct: 65  PSIYMITPNGRFKCNTRLCLSITDFHPDTWNPA----WSVSTILTGLLSFMV 112


>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 173

 Score = 24.1 bits (51), Expect = 8.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 164 SYLFKVALMGLSA 176
           SYLFK  ++G + 
Sbjct: 1   SYLFKYIIIGDTG 13


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.337    0.149    0.463 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 642,696
Number of extensions: 28169
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 45
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 50 (23.3 bits)