Query gi|254780730|ref|YP_003065143.1| hypothetical protein CLIBASIA_03085 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 120
No_of_seqs 110 out of 335
Neff 2.6
Searched_HMMs 13730
Date Wed Jun 1 08:47:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780730.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kcza2 d.54.1.1 (A:1-160) bet 16.6 31 0.0023 13.6 3.0 35 13-47 124-158 (160)
2 d1kkoa2 d.54.1.1 (A:1-160) bet 12.8 40 0.0029 13.0 2.6 34 11-44 122-155 (160)
3 d1f5na1 a.114.1.1 (A:284-583) 5.4 84 0.0061 11.2 2.2 19 40-58 7-25 (300)
4 d2pgda1 a.100.1.1 (A:177-473) 4.8 91 0.0067 11.0 1.7 32 18-50 12-46 (297)
5 d1kpta_ d.70.1.1 (A:) Virally 4.0 84 0.0061 11.2 -0.2 26 44-72 64-89 (105)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 3.9 1.1E+02 0.0079 10.6 4.5 25 17-41 2-26 (158)
7 d1cf1a1 b.1.18.11 (A:10-182) A 3.3 1.2E+02 0.009 10.3 1.0 17 58-74 112-128 (173)
8 d1aipc1 a.5.2.2 (C:2-53) Elong 3.0 1.3E+02 0.0098 10.1 1.2 19 2-21 2-20 (52)
9 d1jvra_ a.61.1.2 (A:) HTLV-II 2.9 1.1E+02 0.0078 10.6 -0.5 26 4-29 49-74 (137)
10 d1yzma1 a.2.19.1 (A:456-501) F 2.9 1.4E+02 0.01 10.0 1.2 11 2-12 7-17 (46)
No 1
>d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]}
Probab=16.56 E-value=31 Score=13.60 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25702999999999999999999987635899999
Q gi|254780730|r 13 GSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVY 47 (120)
Q Consensus 13 EsGATAIEYgLIaALIaVAIIaavt~LGt~L~~~F 47 (120)
..=-|||+||+--||...+..+.-.++-+-+..-|
T Consensus 124 ~~LHtAiRYGvSQALL~A~A~a~r~tmaeVi~~Ey 158 (160)
T d1kcza2 124 NRLHTAIRYGITQAILDAVAKTRKVTMAEVIRDEY 158 (160)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 60148899728999999999982870989767431
No 2
>d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}
Probab=12.84 E-value=40 Score=13.02 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=21.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1225702999999999999999999987635899
Q gi|254780730|r 11 KNGSGATAIEYGLLASLVSVAIISAVSTLGDRMK 44 (120)
Q Consensus 11 ~DEsGATAIEYgLIaALIaVAIIaavt~LGt~L~ 44 (120)
....=-|||+||+--||...+..+.-.++-+-+.
T Consensus 122 ~g~~LHtAiRYGvSQALL~A~A~a~r~tmaeVi~ 155 (160)
T d1kkoa2 122 DGNLLHTAVRYGLSQALLDATALASGRLKTEVVC 155 (160)
T ss_dssp TTEECCHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 8870138899728999999999983860989788
No 3
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.38 E-value=84 Score=11.20 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHCCCC
Q ss_conf 3589999999973101478
Q gi|254780730|r 40 GDRMKGVYQTISTELDKGD 58 (120)
Q Consensus 40 Gt~L~~~FttVst~LnkG~ 58 (120)
|..+..++....+.+|.|+
T Consensus 7 g~~l~~l~~~yv~ain~g~ 25 (300)
T d1f5na1 7 GPRLESLVLTYVNAISSGD 25 (300)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHCCCC
T ss_conf 7999999999999872899
No 4
>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]}
Probab=4.84 E-value=91 Score=10.99 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q ss_conf 9999999999999999999876---35899999999
Q gi|254780730|r 18 AIEYGLLASLVSVAIISAVSTL---GDRMKGVYQTI 50 (120)
Q Consensus 18 AIEYgLIaALIaVAIIaavt~L---Gt~L~~~FttV 50 (120)
.||||++-++=-+--+- -..+ -..+..+|..-
T Consensus 12 gIEY~~mq~iaE~y~~l-~~~~~~~~~~i~~vf~~w 46 (297)
T d2pgda1 12 GIEYGDMQLICEAYHLM-KDVLGLGHKEMAKAFEEW 46 (297)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHH
T ss_conf 79999999999999999-974089989999999998
No 5
>d1kpta_ d.70.1.1 (A:) Virally encoded KP4 toxin {Ustilago maydis, P4 strain [TaxId: 5270]}
Probab=3.97 E-value=84 Score=11.20 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999997310147898767887557867
Q gi|254780730|r 44 KGVYQTISTELDKGDVPPTKPGSVPMQPE 72 (120)
Q Consensus 44 ~~~FttVst~LnkG~~pp~~p~~~~~~~~ 72 (120)
..+...+..=++-|= .+=||||++|-
T Consensus 64 ~~~~~~lq~lidHGC---k~CGSvp~~~g 89 (105)
T d1kpta_ 64 TEACRHLTNLVNHGC---RVCGSDPLYAG 89 (105)
T ss_dssp HHHHHHHHHHHHHTC---SSCEEEESSTT
T ss_pred HHHHHHHHHHHHHCC---CCCCCCCCCCC
T ss_conf 999999999997087---52277424589
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=3.92 E-value=1.1e+02 Score=10.58 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2999999999999999999987635
Q gi|254780730|r 17 TAIEYGLLASLVSVAIISAVSTLGD 41 (120)
Q Consensus 17 TAIEYgLIaALIaVAIIaavt~LGt 41 (120)
|.||--+.+++|+|-...++-.+..
T Consensus 2 TLIELlVViaIIgILaaia~P~~~~ 26 (158)
T d2pila_ 2 TLIELMIVIAIVGILAAVALPAYQD 26 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2149999999999999999999999
No 7
>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}
Probab=3.32 E-value=1.2e+02 Score=10.26 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 89876788755786778
Q gi|254780730|r 58 DVPPTKPGSVPMQPESS 74 (120)
Q Consensus 58 ~~pp~~p~~~~~~~~~~ 74 (120)
..|+-+|.||-+||...
T Consensus 112 ~~p~~~P~SVtLQP~p~ 128 (173)
T d1cf1a1 112 TFPDYLPCSVMLQPAPQ 128 (173)
T ss_dssp CCCSSCCCCEEECCCTT
T ss_pred ECCCCCCCEEEECCCCC
T ss_conf 07899996378665886
No 8
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=2.98 E-value=1.3e+02 Score=10.05 Aligned_cols=19 Identities=32% Similarity=0.695 Sum_probs=12.3
Q ss_pred HHHHHHHHHHCCCCHHHHHH
Q ss_conf 26999999612257029999
Q gi|254780730|r 2 KMNIIKKILKNGSGATAIEY 21 (120)
Q Consensus 2 rMn~ikrFl~DEsGATAIEY 21 (120)
.|.+|+.+ |++.|+.+.+-
T Consensus 2 ~~elvK~L-R~~Tga~~~dc 20 (52)
T d1aipc1 2 QMELIKKL-REATGAGMMDV 20 (52)
T ss_dssp HHHHHHHH-HHHHCCCHHHH
T ss_pred HHHHHHHH-HHHHCCCHHHH
T ss_conf 18899999-99869879999
No 9
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=2.94 E-value=1.1e+02 Score=10.62 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=16.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99999961225702999999999999
Q gi|254780730|r 4 NIIKKILKNGSGATAIEYGLLASLVS 29 (120)
Q Consensus 4 n~ikrFl~DEsGATAIEYgLIaALIa 29 (120)
+|++.+++-.-=.--|.|.|+++||-
T Consensus 49 ~flklalkTpvwl~Pi~ySlla~liP 74 (137)
T d1jvra_ 49 RFLKLALKTPIWLNPIDYSLLASLIP 74 (137)
T ss_dssp HHHHHHHTCTTSTTTTCTTTHHHHSC
T ss_pred HHHHHHHHCCCCCCCCCCCHHHCCCC
T ss_conf 99999983853126601001012378
No 10
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.91 E-value=1.4e+02 Score=10.00 Aligned_cols=11 Identities=9% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHHHHHHC
Q ss_conf 26999999612
Q gi|254780730|r 2 KMNIIKKILKN 12 (120)
Q Consensus 2 rMn~ikrFl~D 12 (120)
||+.|+.|+++
T Consensus 7 Qi~~ik~yI~Q 17 (46)
T d1yzma1 7 QIHNITSFIRQ 17 (46)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
Done!