BLAST/PSIBLAST alignment of GI: 254780730 and GI: 33593020 at iteration 1
>gi|33593020|ref|NP_880664.1| hypothetical protein BP1991 [Bordetella pertussis Tohama I] Length = 58
>gi|33563395|emb|CAE42271.1| putative membrane protein [Bordetella pertussis Tohama I] Length = 58
>gi|332382432|gb|AEE67279.1| hypothetical protein BPTD_1961 [Bordetella pertussis CS] Length = 58
 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query: 6  IKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTEL 54
          +K   ++  GATAIEYGL+  L++V II +VS LG+ +KG + TI TEL
Sbjct: 5  LKNFWRDEEGATAIEYGLIVGLIAVVIIGSVSLLGETLKGFFDTIQTEL 53