RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780730|ref|YP_003065143.1| hypothetical protein
CLIBASIA_03085 [Candidatus Liberibacter asiaticus str. psy62]
(120 letters)
>gnl|CDD|185477 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 30.8 bits (70), Expect = 0.096
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 53 ELDKGDVPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPK-RIQSPAKNKK 111
E+D G PP + ++ + A PT P + PA K
Sbjct: 117 EIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK 176
Query: 112 SYVKP 116
P
Sbjct: 177 PPPTP 181
>gnl|CDD|150640 pfam09990, DUF2231, Predicted membrane protein (DUF2231). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 100
Score = 29.1 bits (66), Expect = 0.29
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 21 YGLLASLVSVAIISAVSTLGDRMKGVY 47
GL SLV VA++ LG + Y
Sbjct: 71 SGLALSLVVVALLGVQGWLGGELVYRY 97
>gnl|CDD|183848 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 27.9 bits (63), Expect = 0.75
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 15 GATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTIS 51
G AI+ G++A ++ A+I + + G+ I+
Sbjct: 261 GQDAIDAGIIAGIIGFALIFLFMLVYYGLPGLIANIA 297
>gnl|CDD|130566 TIGR01502, B_methylAsp_ase, methylaspartate ammonia-lyase. This
model describes methylaspartate ammonia-lyase, also
called beta-methylaspartase (EC 4.3.1.2). It follows
methylaspartate mutase (composed of S and E subunits) in
one of several possible pathways of glutamate
fermentation.
Length = 408
Score = 26.4 bits (58), Expect = 1.7
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 5 IIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVPPTKP 64
+ +K+ N + TAI YG VS A++ A + R + + I E + P +
Sbjct: 114 VFEKMTVNRNLHTAIRYG-----VSQALLDAAAKT--RKTTMAEVIRDEYN----PGAET 162
Query: 65 GSVPMQPES 73
+VP+ +S
Sbjct: 163 NAVPVFAQS 171
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional.
Length = 467
Score = 26.3 bits (57), Expect = 1.8
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 54 LDKGDVPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSY 113
LDKG+ +KP P +T +PP K + P K+S+K+P + +K S
Sbjct: 361 LDKGEPRASKPAEKPA------AATD-KPPEKASDKPSPEKTSEKTPDKSHEKQLDKSSE 413
Query: 114 VKPNKS 119
K+
Sbjct: 414 PVAEKA 419
>gnl|CDD|162310 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model.
Length = 546
Score = 26.4 bits (58), Expect = 2.0
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 57 GDVPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKN 109
G P T P QP + +P+ PA P K+ +P Q+ +N
Sbjct: 193 GSTPATAPAPASAQPAAQSPAATQPEPAAA---PAAAKAQAPAP--QQAGTQN 240
>gnl|CDD|178158 PLN02543, PLN02543, pfkB-type carbohydrate kinase family protein.
Length = 496
Score = 26.0 bits (57), Expect = 2.2
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 56 KGDVPPTKPGSVP--------MQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPA 107
K + P+ S P PES PS R + +S P + +++ K Q
Sbjct: 38 KASLHPSIKRSRPGRCSTNGAAVPESPKPSRRGRKKKPTSSPPKAKTTRRRTKKTDQELD 97
>gnl|CDD|183727 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 25.4 bits (56), Expect = 3.4
Identities = 8/57 (14%), Positives = 20/57 (35%)
Query: 63 KPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKS 119
+ + QP ++ + P + T+ PV+ ++ + +P K
Sbjct: 122 QQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAE 178
>gnl|CDD|184912 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 25.3 bits (56), Expect = 3.6
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 60 PPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSP 106
PP P P ++ + Q PA + P + SP + SP
Sbjct: 548 PPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594
>gnl|CDD|150740 pfam10100, DUF2338, Uncharacterized protein conserved in bacteria
(DUF2338). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 429
Score = 25.5 bits (56), Expect = 3.7
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 7 KKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTI 50
K+L G+G AI+ + L A + R K +++ +
Sbjct: 2 SKVLILGTGPVAIQLAVDLKLHGDARLGIAGRPSTRSKRLFEAL 45
>gnl|CDD|182271 PRK10153, PRK10153, DNA-binding transcriptional activator CadC;
Provisional.
Length = 517
Score = 25.4 bits (56), Expect = 3.7
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 61 PTKPGSVPMQPESSNPSTR--LQPPAKPTSIPVKTKSSKK 98
+ P P ++ PS Q PA P + V +K
Sbjct: 118 SSPPPIPEAVPATAEPSESANAQFPAPPLTRAVCQSPAKS 157
>gnl|CDD|162151 TIGR00996, Mtu_fam_mce, virulence factor Mce family protein.
Members of this paralogous family are found as six
tandem homologous proteins in the same orientation per
cassette, in four separate cassettes in Mycobacterium
tuberculosis. The six members of each cassette represent
six subfamilies. One subfamily includes the protein mce
(mycobacterial cell entry), a virulence protein required
for invasion of non-phagocytic cells.
Length = 291
Score = 25.3 bits (56), Expect = 3.9
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 15/81 (18%)
Query: 6 IKKILKNGSGAT---AIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVPPT 62
+ I G+GA +++ G+ + A I + + LG R EL PP
Sbjct: 61 VTAISLPGNGARVTFSLDRGVTIPANATAAIRSTTLLGSR--------YVEL----TPPK 108
Query: 63 KPGSVPMQPESSNPSTRLQPP 83
PG P+ P P R P
Sbjct: 109 GPGGPPLPPGGVIPLARTSVP 129
>gnl|CDD|165506 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 25.3 bits (55), Expect = 3.9
Identities = 11/53 (20%), Positives = 16/53 (30%)
Query: 64 PGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKP 116
P SVP + P++ PPA P +P + P
Sbjct: 412 PASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPD 464
Score = 24.1 bits (52), Expect = 7.9
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 55 DKGDVPPTKPGSVPMQPESSNPSTRLQPPAKPTSIP 90
D D P P +++P+ L PP
Sbjct: 2803 DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTA 2838
>gnl|CDD|151262 pfam10812, DUF2561, Protein of unknown function (DUF2561). This
family of proteins with unknown function appears to be
restricted to Mycobacterium spp.
Length = 207
Score = 25.2 bits (55), Expect = 3.9
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 28 VSVAIISAVSTLGDRMKGVYQTISTELDKGDVPPTKPGSVPMQPESSNPSTRLQPPAKPT 87
VS +I+ L R + + D PP + + +P + +
Sbjct: 72 VSALVIAGAVPLLLRARRMAD---------DEPPPRSQGLRRRPGQPVRAGYAAARTEKE 122
Query: 88 SIPVKTKSSKKSPKRIQSPA 107
S+P S+ S A
Sbjct: 123 SVPATHAPSRTDAGEWSSAA 142
>gnl|CDD|183479 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 24.8 bits (54), Expect = 5.2
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 63 KPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQ-SPAKNKKSYVKP 116
P P Q +++ A+P S +T ++ K+P + AKN K+
Sbjct: 228 VPLLAPWQGDAAPVPP--SEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQ 280
>gnl|CDD|184793 PRK14696, tynA, tyramine oxidase; Provisional.
Length = 721
Score = 24.8 bits (54), Expect = 5.2
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 67 VPMQPESSNPSTRLQPPAKPTSI 89
VPM + R+ P KP I
Sbjct: 280 VPMTARPYDGRDRVAPAVKPLQI 302
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 24.9 bits (55), Expect = 5.3
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 9 ILKNGSGATAIEYGLLASLVSVAIISAVSTLG---DRMKGVYQTI 50
IL +G ++ EYGLL V A+I+ TL R + I
Sbjct: 241 ILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRP-LRSLI 284
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 24.7 bits (53), Expect = 6.3
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 61 PTKPGSVPMQPESSNPSTRLQPPAKPTS--IPVKTKSSK--KSPKRIQSPAKNKKSYVKP 116
P P P PE R + +PT P + KSPKR +SP K+ K P
Sbjct: 582 PKDPKH-PKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESP-KSPKRPPPP 639
Query: 117 NKSS 120
+ S
Sbjct: 640 QRPS 643
>gnl|CDD|168338 PRK05996, motB, flagellar motor protein MotB; Validated.
Length = 423
Score = 24.7 bits (54), Expect = 7.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 90 PVKTKSSKKSPKRIQSPAKNKKSYVKPNKS 119
P+K K S K ++ P + KP KS
Sbjct: 70 PIKLTDRKPSEKGLKDPVDGAEGEQKPGKS 99
>gnl|CDD|129053 smart00817, Amelin, Ameloblastin precursor (Amelin). This family
consists of several mammalian Ameloblastin precursor
(Amelin) proteins. Matrix proteins of tooth enamel
consist mainly of amelogenin but also of non-amelogenin
proteins, which, although their volumetric percentage is
low, have an important role in enamel mineralisation.
One of the non-amelogenin proteins is ameloblastin, also
known as amelin and sheathlin. Ameloblastin (AMBN) is
one of the enamel sheath proteins which is though to
have a role in determining the prismatic structure of
growing enamel crystals.
Length = 411
Score = 24.5 bits (53), Expect = 7.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 60 PPTKPGSVPMQPESSNPSTRLQPPAKPT 87
PP P +QP+ LQP A PT
Sbjct: 97 PPPLPSQPSLQPQQPGLKPFLQPTALPT 124
>gnl|CDD|149670 pfam08688, ASD1, Apx/Shroom domain ASD1. This region is found in
the actin binding protein Shroom which mediates apical
contriction in epithelial cells and is required for
neural tube closure. ASD1 has been implicated directly
in F-actin binding.
Length = 181
Score = 24.5 bits (53), Expect = 7.6
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 64 PGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNK 118
S P +P + KP+ K + S+ ++ + + KKSY +P K
Sbjct: 90 LSSAPSEPAHTPRFNSEGLAKKPSVTVAKPQVSRIGGRKRFTAEQKKKSYSEPEK 144
>gnl|CDD|162214 TIGR01129, secD, protein-export membrane protein SecD. SecD from
Mycobacterium tuberculosis has a long Pro-rich insert.
Length = 397
Score = 24.6 bits (54), Expect = 7.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 15 GATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTIS 51
GA +IE G+ A L+ + ++ L R+ G+ I+
Sbjct: 243 GADSIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIA 279
>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 438
Score = 24.4 bits (53), Expect = 7.8
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 37 STLGDRMKGVYQTISTELDKGDV 59
+ D M+ ++IS +L GD+
Sbjct: 385 ARRFDTMEDAIESISPQLKSGDM 407
>gnl|CDD|184914 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 24.0 bits (52), Expect = 9.2
Identities = 10/60 (16%), Positives = 15/60 (25%)
Query: 60 PPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKS 119
E++ P P P + K + I K K + P K
Sbjct: 393 AAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.305 0.123 0.329
Gapped
Lambda K H
0.267 0.0448 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,769,654
Number of extensions: 93213
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 77
Length of query: 120
Length of database: 5,994,473
Length adjustment: 81
Effective length of query: 39
Effective length of database: 4,244,225
Effective search space: 165524775
Effective search space used: 165524775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (24.1 bits)