RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780730|ref|YP_003065143.1| hypothetical protein CLIBASIA_03085 [Candidatus Liberibacter asiaticus str. psy62] (120 letters) >1koa_A Twitchin; kinase, intrasteric regulation; 3.30A {Caenorhabditis elegans} (A:132-373) Length = 242 Score = 26.7 bits (57), Expect = 1.1 Identities = 11/55 (20%), Positives = 18/55 (32%) Query: 54 LDKGDVPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAK 108 L G+ P + S + + A P +P + S S R P + Sbjct: 177 LTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQE 231 >2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A {Giardia intestinalis} PDB: 2iic_A (A:1-74,A:231-310) Length = 154 Score = 26.5 bits (58), Expect = 1.5 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Query: 6 IKKILKNGSGATAIEYGLL--ASLVSVAIISAVSTLGDRM 43 +KK +KNG + G A V+ A SAV T D M Sbjct: 56 LKKCIKNGPYEDVMALGWDAPARAVAYAFHSAVETQNDDM 95 >2cvx_A Ribonucleoside-diphosphate reductase large chain 1; eukaryotic, ribonucleotide reductase, DNTP regulation, oxidoreductase; HET: DGT ADP; 2.20A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* (A:167-616,A:689-888) Length = 650 Score = 26.0 bits (56), Expect = 2.0 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%) Query: 60 PPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKS 112 S PE P+ + A +T+ + K I N ++ Sbjct: 593 ELNVQESKVEVPEVPAPTKNEEKAAPIVD-DEETEFDIYNSKVIACAIDNPEA 644 Score = 24.0 bits (51), Expect = 6.6 Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 3/48 (6%) Query: 59 VPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSP 106 + VP ++ + P +SK I +P Sbjct: 598 ESKVEVPEVPAPTKNEEKAA---PIVDDEETEFDIYNSKVIACAIDNP 642 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.305 0.123 0.329 Gapped Lambda K H 0.267 0.0392 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 763,908 Number of extensions: 28518 Number of successful extensions: 92 Number of sequences better than 10.0: 1 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 27 Length of query: 120 Length of database: 4,956,049 Length adjustment: 72 Effective length of query: 48 Effective length of database: 2,522,089 Effective search space: 121060272 Effective search space used: 121060272 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.9 bits) S2: 50 (23.9 bits)