RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780730|ref|YP_003065143.1| hypothetical protein
CLIBASIA_03085 [Candidatus Liberibacter asiaticus str. psy62]
         (120 letters)



>1koa_A Twitchin; kinase, intrasteric regulation; 3.30A
           {Caenorhabditis elegans} (A:132-373)
          Length = 242

 Score = 26.7 bits (57), Expect = 1.1
 Identities = 11/55 (20%), Positives = 18/55 (32%)

Query: 54  LDKGDVPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAK 108
           L  G+ P         +      S + +  A P  +P   + S  S  R   P +
Sbjct: 177 LTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQE 231


>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein;
          1.10A {Giardia intestinalis} PDB: 2iic_A
          (A:1-74,A:231-310)
          Length = 154

 Score = 26.5 bits (58), Expect = 1.5
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 6  IKKILKNGSGATAIEYGLL--ASLVSVAIISAVSTLGDRM 43
          +KK +KNG     +  G    A  V+ A  SAV T  D M
Sbjct: 56 LKKCIKNGPYEDVMALGWDAPARAVAYAFHSAVETQNDDM 95


>2cvx_A Ribonucleoside-diphosphate reductase large chain 1;
           eukaryotic, ribonucleotide reductase, DNTP regulation,
           oxidoreductase; HET: DGT ADP; 2.20A {Saccharomyces
           cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
           1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A*
           (A:167-616,A:689-888)
          Length = 650

 Score = 26.0 bits (56), Expect = 2.0
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 60  PPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKS 112
                 S    PE   P+   +  A       +T+    + K I     N ++
Sbjct: 593 ELNVQESKVEVPEVPAPTKNEEKAAPIVD-DEETEFDIYNSKVIACAIDNPEA 644



 Score = 24.0 bits (51), Expect = 6.6
 Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 3/48 (6%)

Query: 59  VPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSP 106
               +   VP   ++   +    P            +SK     I +P
Sbjct: 598 ESKVEVPEVPAPTKNEEKAA---PIVDDEETEFDIYNSKVIACAIDNP 642


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.305    0.123    0.329 

Gapped
Lambda     K      H
   0.267   0.0392    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 763,908
Number of extensions: 28518
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 27
Length of query: 120
Length of database: 4,956,049
Length adjustment: 72
Effective length of query: 48
Effective length of database: 2,522,089
Effective search space: 121060272
Effective search space used: 121060272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.9 bits)