RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780730|ref|YP_003065143.1| hypothetical protein
CLIBASIA_03085 [Candidatus Liberibacter asiaticus str. psy62]
         (120 letters)



>d2af4c1 c.77.1.5 (C:2-333) Phosphotransacetylase Pta
           {Methanosarcina thermophila [TaxId: 2210]}
          Length = 332

 Score = 23.5 bits (50), Expect = 6.0
 Identities = 8/40 (20%), Positives = 14/40 (35%)

Query: 4   NIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRM 43
           NI  KI +  + A A           +  +S   +  D +
Sbjct: 278 NIAYKIAQRLAKAEAYGPITQGLAKPINDLSRGCSDEDIV 317


>d1k3va_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
           protein {Porcine parvovirus [TaxId: 10796]}
          Length = 542

 Score = 23.4 bits (50), Expect = 6.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 46  VYQTISTELDKGDVPPTKPGSVPMQPESSNPSTR 79
           + Q  +T  + G+  PT  G + M PE S    R
Sbjct: 506 IQQHTTTAENIGNYIPTNIGGIRMFPEYSQLIPR 539


>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 124

 Score = 22.7 bits (48), Expect = 9.9
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 58 DVPPTKPGSVPMQPESSNPSTRLQ 81
          ++PP K   V    + + P  +L 
Sbjct: 24 EMPPEKADGVVEGIDVNGPKAQLM 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.305    0.123    0.329 

Gapped
Lambda     K      H
   0.267   0.0520    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,002
Number of extensions: 14395
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 5
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 47 (22.4 bits)