BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780730|ref|YP_003065143.1| hypothetical protein CLIBASIA_03085 [Candidatus Liberibacter asiaticus str. psy62] (120 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780730|ref|YP_003065143.1| hypothetical protein CLIBASIA_03085 [Candidatus Liberibacter asiaticus str. psy62] Length = 120 Score = 231 bits (590), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 120/120 (100%), Positives = 120/120 (100%) Query: 1 MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVP 60 MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVP Sbjct: 1 MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVP 60 Query: 61 PTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS 120 PTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS Sbjct: 61 PTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS 120 >gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter asiaticus str. psy62] Length = 58 Score = 70.9 bits (172), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 47/55 (85%) Query: 1 MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELD 55 MKM+I+K L++ SGATAIEYGLLASL++VAII++V+TLG ++ V+ IS++L+ Sbjct: 1 MKMHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADISSKLN 55 >gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62] Length = 56 Score = 69.7 bits (169), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 32/50 (64%), Positives = 43/50 (86%) Query: 1 MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTI 50 MKMNI+K LK+ SGATAIEYGLLASL++VAII++V+TLG ++ V++ I Sbjct: 1 MKMNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDI 50 >gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str. psy62] Length = 62 Score = 64.3 bits (155), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 28/50 (56%), Positives = 41/50 (82%) Query: 1 MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTI 50 MKM+I+K L++ SGATAIEYGLL SL++V II++V+TLG ++K ++ I Sbjct: 1 MKMHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAI 50 >gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter asiaticus str. psy62] Length = 60 Score = 35.0 bits (79), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/46 (52%), Positives = 37/46 (80%) Query: 3 MNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQ 48 +N + K+LK+ SGA AIEYG+L +L++VAII+AV+ LG +KG ++ Sbjct: 2 INCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFE 47 >gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter asiaticus str. psy62] Length = 75 Score = 23.5 bits (49), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 2/57 (3%) Query: 19 IEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVPPTKPGSVPMQPESSN 75 EYG++A+L++VAII+AV+ LG +KG ++ ++ ++ P P + P+ P S+ Sbjct: 5 YEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQTTKP--PVTRPVTPTSTE 59 >gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 21.2 bits (43), Expect = 5.7, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 20/41 (48%) Query: 19 IEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDV 59 +E GLL ++ I+ VS + ++ IST L G + Sbjct: 271 LETGLLFAVGIAIIMQGVSMFVKELTSSFRGISTSLIPGAI 311 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.305 0.123 0.329 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,681 Number of Sequences: 1233 Number of extensions: 2336 Number of successful extensions: 12 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10 length of query: 120 length of database: 328,796 effective HSP length: 64 effective length of query: 56 effective length of database: 249,884 effective search space: 13993504 effective search space used: 13993504 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.5 bits) S2: 33 (17.3 bits)