BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780730|ref|YP_003065143.1| hypothetical protein
CLIBASIA_03085 [Candidatus Liberibacter asiaticus str. psy62]
         (120 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780730|ref|YP_003065143.1| hypothetical protein CLIBASIA_03085 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 120

 Score =  231 bits (590), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVP 60
           MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVP
Sbjct: 1   MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVP 60

Query: 61  PTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS 120
           PTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS
Sbjct: 61  PTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS 120


>gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 58

 Score = 70.9 bits (172), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 47/55 (85%)

Query: 1  MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELD 55
          MKM+I+K  L++ SGATAIEYGLLASL++VAII++V+TLG ++  V+  IS++L+
Sbjct: 1  MKMHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADISSKLN 55


>gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 56

 Score = 69.7 bits (169), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 43/50 (86%)

Query: 1  MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTI 50
          MKMNI+K  LK+ SGATAIEYGLLASL++VAII++V+TLG ++  V++ I
Sbjct: 1  MKMNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDI 50


>gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 62

 Score = 64.3 bits (155), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 41/50 (82%)

Query: 1  MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTI 50
          MKM+I+K  L++ SGATAIEYGLL SL++V II++V+TLG ++K  ++ I
Sbjct: 1  MKMHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAI 50


>gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 60

 Score = 35.0 bits (79), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 37/46 (80%)

Query: 3  MNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQ 48
          +N + K+LK+ SGA AIEYG+L +L++VAII+AV+ LG  +KG ++
Sbjct: 2  INCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFE 47


>gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 75

 Score = 23.5 bits (49), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 19 IEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVPPTKPGSVPMQPESSN 75
           EYG++A+L++VAII+AV+ LG  +KG ++ ++ ++      P  P + P+ P S+ 
Sbjct: 5  YEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQTTKP--PVTRPVTPTSTE 59


>gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 461

 Score = 21.2 bits (43), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 19  IEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDV 59
           +E GLL ++    I+  VS     +   ++ IST L  G +
Sbjct: 271 LETGLLFAVGIAIIMQGVSMFVKELTSSFRGISTSLIPGAI 311


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.305    0.123    0.329 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,681
Number of Sequences: 1233
Number of extensions: 2336
Number of successful extensions: 12
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 120
length of database: 328,796
effective HSP length: 64
effective length of query: 56
effective length of database: 249,884
effective search space: 13993504
effective search space used: 13993504
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 33 (17.3 bits)