Query gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 58
No_of_seqs 102 out of 256
Neff 4.4
Searched_HMMs 33803
Date Wed Jun 1 14:13:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780732.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2wbi_A Acyl-COA dehydrogenase 18.1 38 0.0011 16.4 0.5 26 9-34 85-110 (276)
2 >1kcz_A Beta-methylaspartase; 7.9 1.9E+02 0.0055 13.0 2.3 19 13-31 124-142 (148)
3 >2nxx_E Ecdysone receptor (ECR 6.2 2.3E+02 0.0068 12.5 2.2 22 9-30 23-44 (89)
4 >1kko_A 3-methylaspartate ammo 4.8 2.9E+02 0.0085 12.1 2.3 20 12-31 87-106 (112)
5 >1n0q_A 3ANK, 3 ankyrin repeat 4.1 3.3E+02 0.0098 11.8 1.0 21 10-30 63-83 (93)
6 >1wui_L Periplasmic [NIFE] hyd 3.2 4E+02 0.012 11.3 1.2 17 10-26 46-63 (90)
7 >1m56_D Cytochrome C oxidase; 3.0 4.3E+02 0.013 11.2 1.3 18 17-34 33-50 (51)
8 >2hfq_A Hypothetical protein; 2.9 2.5E+02 0.0075 12.3 -0.7 15 9-23 45-59 (109)
9 >1eys_M Photosynthetic reactio 2.8 2.6E+02 0.0076 12.3 -0.7 11 24-34 9-19 (89)
10 >1n11_A Ankyrin; clathrin, BAN 2.7 4.7E+02 0.014 11.0 1.3 12 11-22 70-81 (97)
No 1
>>2wbi_A Acyl-COA dehydrogenase family member 11; human, polymorphism, phosphoprotein, oxidoreductase, alternative splicing; HET: FAD; 2.80A {Homo sapiens} (A:1-111,A:264-428)
Probab=18.10 E-value=38 Score=16.39 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=21.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 95023683299999999999999999
Q gi|254780732|r 9 FLQDESGATAIEYGLLASLIAVAIIA 34 (58)
Q Consensus 9 f~~De~GaTAIEYgLIaalIav~ii~ 34 (58)
|+-++.|-|-+||++++-...-..++
T Consensus 85 ~lp~~~gl~~~eya~~~e~~g~s~~~ 110 (276)
T 2wbi_A 85 FLPAVSGLSHVDYALIAEETGKCFFA 110 (276)
T ss_dssp TCHHHHCCCHHHHHHHHHHHTTSTTH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 79641389889999999997530456
No 2
>>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} (A:1-148)
Probab=7.92 E-value=1.9e+02 Score=12.98 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=13.6
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q ss_conf 3683299999999999999
Q gi|254780732|r 13 ESGATAIEYGLLASLIAVA 31 (58)
Q Consensus 13 e~GaTAIEYgLIaalIav~ 31 (58)
++=-|||+||+=-+|.-.+
T Consensus 124 ~rLhtAiRYGvSQalL~A~ 142 (148)
T 1kcz_A 124 NRLHTAIRYGITQAILDAV 142 (148)
T ss_dssp EECCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 4057899998999999999
No 3
>>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum} (E:1-30,E:151-209)
Probab=6.24 E-value=2.3e+02 Score=12.53 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=17.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9502368329999999999999
Q gi|254780732|r 9 FLQDESGATAIEYGLLASLIAV 30 (58)
Q Consensus 9 f~~De~GaTAIEYgLIaalIav 30 (58)
++.+|---+-.||+++.|++-.
T Consensus 23 ~~~~~~~~d~~EyaLLkAIvLf 44 (89)
T 2nxx_E 23 YFQNEYEHDNAEYALLTAIVIF 44 (89)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9998745899999999999995
No 4
>>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} (A:1-14,A:51-148)
Probab=4.81 E-value=2.9e+02 Score=12.05 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=14.0
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 23683299999999999999
Q gi|254780732|r 12 DESGATAIEYGLLASLIAVA 31 (58)
Q Consensus 12 De~GaTAIEYgLIaalIav~ 31 (58)
.++=-|||+||+=-++.-.+
T Consensus 87 g~rLHtAirYGvSQAlLdA~ 106 (112)
T 1kko_A 87 GNLLHTAVRYGLSQALLDAT 106 (112)
T ss_dssp TEECCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 94067899999999999999
No 5
>>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} (A:)
Probab=4.10 E-value=3.3e+02 Score=11.77 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=14.5
Q ss_pred HHCCCCCCHHHHHHHHHHHHH
Q ss_conf 502368329999999999999
Q gi|254780732|r 10 LQDESGATAIEYGLLASLIAV 30 (58)
Q Consensus 10 ~~De~GaTAIEYgLIaalIav 30 (58)
.+|+.|-|++.|+..-+-..+
T Consensus 63 ~~d~~g~T~Lh~A~~~~~~~~ 83 (93)
T 1n0q_A 63 AKDKNGRTPLHLAARNGHLEV 83 (93)
T ss_dssp CCCTTSCCHHHHHHHTTCHHH
T ss_pred CCCCCCCCHHHHHHHCCCHHH
T ss_conf 343444755999999588999
No 6
>>1wui_L Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} (L:1-46,L:491-534)
Probab=3.20 E-value=4e+02 Score=11.33 Aligned_cols=17 Identities=12% Similarity=0.366 Sum_probs=12.5
Q ss_pred HHCCCC-CCHHHHHHHHH
Q ss_conf 502368-32999999999
Q gi|254780732|r 10 LQDESG-ATAIEYGLLAS 26 (58)
Q Consensus 10 ~~De~G-aTAIEYgLIaa 26 (58)
+||..| ....|.+||..
T Consensus 46 irD~~g~~Gp~E~aLigt 63 (90)
T 1wui_L 46 IRCDKNKLSPVEASLIGT 63 (90)
T ss_dssp HCCTTCCCCHHHHHHTTC
T ss_pred HCCCCCCHHHHHHHHCCC
T ss_conf 843244655999983799
No 7
>>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} (D:)
Probab=2.97 E-value=4.3e+02 Score=11.20 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 299999999999999999
Q gi|254780732|r 17 TAIEYGLLASLIAVAIIA 34 (58)
Q Consensus 17 TAIEYgLIaalIav~ii~ 34 (58)
|-.-+.+|+-||.++|+.
T Consensus 33 t~~~i~ii~~liFlAif~ 50 (51)
T 1m56_D 33 TWAAVVIVAALIFLALAN 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999962
No 8
>>2hfq_A Hypothetical protein; A/B protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Nitrosomonas europaea} (A:)
Probab=2.87 E-value=2.5e+02 Score=12.32 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=10.2
Q ss_pred HHHCCCCCCHHHHHH
Q ss_conf 950236832999999
Q gi|254780732|r 9 FLQDESGATAIEYGL 23 (58)
Q Consensus 9 f~~De~GaTAIEYgL 23 (58)
|..+++...++|||-
T Consensus 45 lv~~kd~~kv~~yaK 59 (109)
T 2hfq_A 45 FTDVRDDKKAIEFAK 59 (109)
T ss_dssp EESCCCHHHHHHHHH
T ss_pred EECCCCHHHHHHHHH
T ss_conf 727886799999999
No 9
>>1eys_M Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} (M:53-141)
Probab=2.78 E-value=2.6e+02 Score=12.31 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780732|r 24 LASLIAVAIIA 34 (58)
Q Consensus 24 IaalIav~ii~ 34 (58)
+-++++..||+
T Consensus 9 ~~g~l~~~iIg 19 (89)
T 1eys_M 9 FFGLVAISIIG 19 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 10
>>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} (A:106-202)
Probab=2.65 E-value=4.7e+02 Score=11.00 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=0.0
Q ss_pred HCCCCCCHHHHH
Q ss_conf 023683299999
Q gi|254780732|r 11 QDESGATAIEYG 22 (58)
Q Consensus 11 ~De~GaTAIEYg 22 (58)
+|++|-|++.|+
T Consensus 70 ~d~~g~tplh~A 81 (97)
T 1n11_A 70 AGKNGLTPLHVA 81 (97)
T ss_dssp CCSSCCCHHHHH
T ss_pred CCCCCCCHHHHH
T ss_conf 689999899999
Done!