Query gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 58
No_of_seqs 102 out of 256
Neff 4.4
Searched_HMMs 13730
Date Wed Jun 1 07:12:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780732.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kcza2 d.54.1.1 (A:1-160) bet 11.8 53 0.0039 13.8 2.3 24 12-35 123-146 (160)
2 d1kkoa2 d.54.1.1 (A:1-160) bet 7.2 83 0.0061 12.8 2.3 24 11-34 122-145 (160)
3 d1aipc1 a.5.2.2 (C:2-53) Elong 3.5 1.5E+02 0.011 11.5 1.3 19 2-21 2-20 (52)
4 d1y7oa1 c.14.1.1 (A:2-193) Clp 3.3 83 0.0061 12.8 -0.8 10 15-24 176-185 (192)
5 d1tg6a1 c.14.1.1 (A:1-193) Clp 2.7 1E+02 0.0076 12.3 -0.8 10 15-24 176-185 (193)
6 d3brja1 a.285.1.1 (A:6-172) Ma 2.3 2.2E+02 0.016 10.8 2.0 17 4-22 32-48 (167)
7 d1n11a_ d.211.1.1 (A:) Ankyrin 2.2 2.3E+02 0.016 10.6 1.1 15 12-26 360-374 (408)
8 d1pv7a_ f.38.1.2 (A:) Lactose 2.1 2.3E+02 0.017 10.6 4.9 42 5-47 29-70 (417)
9 d2cjja1 a.4.1.3 (A:8-70) Radia 2.1 2.3E+02 0.017 10.6 1.0 28 31-58 11-38 (63)
10 d2f6ia1 c.14.1.1 (A:177-366) C 2.1 1.4E+02 0.01 11.6 -0.8 7 18-24 170-176 (190)
No 1
>d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]}
Probab=11.79 E-value=53 Score=13.76 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=16.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 236832999999999999999999
Q gi|254780732|r 12 DESGATAIEYGLLASLIAVAIIAS 35 (58)
Q Consensus 12 De~GaTAIEYgLIaalIav~ii~a 35 (58)
.++=-|||+||+=-+|...+.-..
T Consensus 123 g~~LHtAiRYGvSQALL~A~A~a~ 146 (160)
T d1kcza2 123 GNRLHTAIRYGITQAILDAVAKTR 146 (160)
T ss_dssp TEECCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 860148899728999999999982
No 2
>d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}
Probab=7.16 E-value=83 Score=12.79 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=16.5
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 023683299999999999999999
Q gi|254780732|r 11 QDESGATAIEYGLLASLIAVAIIA 34 (58)
Q Consensus 11 ~De~GaTAIEYgLIaalIav~ii~ 34 (58)
+.++=-|||+||+=-+|...+.-.
T Consensus 122 ~g~~LHtAiRYGvSQALL~A~A~a 145 (160)
T d1kkoa2 122 DGNLLHTAVRYGLSQALLDATALA 145 (160)
T ss_dssp TTEECCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 887013889972899999999998
No 3
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=3.50 E-value=1.5e+02 Score=11.49 Aligned_cols=19 Identities=26% Similarity=0.579 Sum_probs=13.6
Q ss_pred HHHHHHHHHHCCCCCCHHHH
Q ss_conf 16999999502368329999
Q gi|254780732|r 2 KMHIVKNFLQDESGATAIEY 21 (58)
Q Consensus 2 ~m~~~~~f~~De~GaTAIEY 21 (58)
.|++++ -+|++.|+...+-
T Consensus 2 ~~elvK-~LR~~Tga~~~dc 20 (52)
T d1aipc1 2 QMELIK-KLREATGAGMMDV 20 (52)
T ss_dssp HHHHHH-HHHHHHCCCHHHH
T ss_pred HHHHHH-HHHHHHCCCHHHH
T ss_conf 188999-9999869879999
No 4
>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}
Probab=3.28 E-value=83 Score=12.78 Aligned_cols=10 Identities=30% Similarity=0.880 Sum_probs=4.2
Q ss_pred CCCHHHHHHH
Q ss_conf 8329999999
Q gi|254780732|r 15 GATAIEYGLL 24 (58)
Q Consensus 15 GaTAIEYgLI 24 (58)
+.-|+|||||
T Consensus 176 a~EAleyGli 185 (192)
T d1y7oa1 176 AQETLEYGFI 185 (192)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHCCCC
T ss_conf 9999985998
No 5
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=2.72 E-value=1e+02 Score=12.30 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=4.5
Q ss_pred CCCHHHHHHH
Q ss_conf 8329999999
Q gi|254780732|r 15 GATAIEYGLL 24 (58)
Q Consensus 15 GaTAIEYgLI 24 (58)
+.-|+|||++
T Consensus 176 a~EAl~yGli 185 (193)
T d1tg6a1 176 PMEAQEFGIL 185 (193)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHCCCC
T ss_conf 9999983999
No 6
>d3brja1 a.285.1.1 (A:6-172) Mannitol operon repressor MtlR {Vibrio parahaemolyticus [TaxId: 670]}
Probab=2.30 E-value=2.2e+02 Score=10.75 Aligned_cols=17 Identities=6% Similarity=0.290 Sum_probs=12.3
Q ss_pred HHHHHHHHCCCCCCHHHHH
Q ss_conf 9999995023683299999
Q gi|254780732|r 4 HIVKNFLQDESGATAIEYG 22 (58)
Q Consensus 4 ~~~~~f~~De~GaTAIEYg 22 (58)
.++++++++++ .|++|+
T Consensus 32 ~Ll~~vF~kdd--~avk~a 48 (167)
T d3brja1 32 GLIQRIFRKDN--FAVQSV 48 (167)
T ss_dssp HHHHHHSCCCC--HHHHHH
T ss_pred HHHHHHHCCHH--HHHHHH
T ss_conf 99999971408--899998
No 7
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.15 E-value=2.3e+02 Score=10.64 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=7.3
Q ss_pred CCCCCCHHHHHHHHH
Q ss_conf 236832999999999
Q gi|254780732|r 12 DESGATAIEYGLLAS 26 (58)
Q Consensus 12 De~GaTAIEYgLIaa 26 (58)
|.+|-|+++|+...+
T Consensus 360 d~~G~t~L~~A~~~~ 374 (408)
T d1n11a_ 360 SSDGTTPLAIAKRLG 374 (408)
T ss_dssp CSSSCCHHHHHHHTT
T ss_pred CCCCCCHHHHHHHCC
T ss_conf 999989999999839
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.14 E-value=2.3e+02 Score=10.63 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999950236832999999999999999999999754899999
Q gi|254780732|r 5 IVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVF 47 (58)
Q Consensus 5 ~~~~f~~De~GaTAIEYgLIaalIav~ii~av~~lG~~l~~~f 47 (58)
++.-+++|+-|.+.-|.|++.+.-.+.-... +.+.+.+.++|
T Consensus 29 ~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~-~~~~G~l~Dr~ 70 (417)
T d1pv7a_ 29 FFPIWLHDINHISKSDTGIIFAAISLFSLLF-QPLFGLLSDKL 70 (417)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 9999999802999999999999999999999-99999999981
No 9
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=2.14 E-value=2.3e+02 Score=10.63 Aligned_cols=28 Identities=7% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999975489999999975212269
Q gi|254780732|r 31 AIIASVTTLGGKLTAVFADISSKLNPKS 58 (58)
Q Consensus 31 ~ii~av~~lG~~l~~~f~~i~~~l~~at 58 (58)
.+.-++..+|....+.|..|+..+...|
T Consensus 11 ~L~~~v~~~~~~~~~~W~~Ia~~l~gRt 38 (63)
T d2cjja1 11 AFERALAVYDKDTPDRWANVARAVEGRT 38 (63)
T ss_dssp HHHHHHHHSCTTCTTHHHHHHHHSTTCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCC
T ss_conf 9999999977788349999998959999
No 10
>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}
Probab=2.11 E-value=1.4e+02 Score=11.64 Aligned_cols=7 Identities=43% Similarity=1.046 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780732|r 18 AIEYGLL 24 (58)
Q Consensus 18 AIEYgLI 24 (58)
|+|||++
T Consensus 170 Al~~Gli 176 (190)
T d2f6ia1 170 AKQYGII 176 (190)
T ss_dssp HHHHTSC
T ss_pred HHHCCCC
T ss_conf 9983998
Done!