BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780732|ref|YP_003065145.1| hypothetical protein
CLIBASIA_03095 [Candidatus Liberibacter asiaticus str. psy62]
         (58 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 58

 Score =  115 bits (288), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/58 (100%), Positives = 58/58 (100%)

Query: 1  MKMHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADISSKLNPKS 58
          MKMHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADISSKLNPKS
Sbjct: 1  MKMHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADISSKLNPKS 58


>gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 56

 Score = 87.8 bits (216), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/51 (86%), Positives = 48/51 (94%)

Query: 1  MKMHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADIS 51
          MKM+IVK+FL+DESGATAIEYGLLASLIAVAIIASVTTLGGKL+ VF DI 
Sbjct: 1  MKMNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDIE 51


>gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 62

 Score = 83.2 bits (204), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 42/50 (84%), Positives = 42/50 (84%)

Query: 1  MKMHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADI 50
          MKMHIVKNFLQDESGATAIEYGLL SLIAV II SVTTLGGKL   F  I
Sbjct: 1  MKMHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAI 50


>gi|254780730|ref|YP_003065143.1| hypothetical protein CLIBASIA_03085 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 120

 Score = 70.5 bits (171), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 47/55 (85%)

Query: 1  MKMHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADISSKLN 55
          MKM+I+K  L++ SGATAIEYGLLASL++VAII++V+TLG ++  V+  IS++L+
Sbjct: 1  MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELD 55


>gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 60

 Score = 38.9 bits (89), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 1/57 (1%)

Query: 3  MHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADISSKL-NPKS 58
          ++ +   L+DESGA AIEYG+L +LIAVAIIA+VT LGG L   F + ++++ N KS
Sbjct: 2  INCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRISNVKS 58


>gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 75

 Score = 26.2 bits (56), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 30/36 (83%)

Query: 20 EYGLLASLIAVAIIASVTTLGGKLTAVFADISSKLN 55
          EYG++A+LIAVAIIA+VT LGG L   F +++++++
Sbjct: 6  EYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMS 41


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 20.4 bits (41), Expect = 5.3,   Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 4  HIVKNFLQDESGA 16
          H++  FL+DE GA
Sbjct: 33 HVLHIFLEDEQGA 45


>gi|254780638|ref|YP_003065051.1| molecular chaperone protein DnaJ [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 384

 Score = 20.4 bits (41), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 7  KNFLQDESGATAIEYG 22
          K  L D+ G  A+EYG
Sbjct: 62 KRALYDQGGHEALEYG 77


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.130    0.338 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,794
Number of Sequences: 1233
Number of extensions: 697
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 58
length of database: 328,796
effective HSP length: 30
effective length of query: 28
effective length of database: 291,806
effective search space:  8170568
effective search space used:  8170568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 31 (16.5 bits)