Query gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 56
No_of_seqs 107 out of 264
Neff 4.6
Searched_HMMs 13730
Date Wed Jun 1 08:51:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780733.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kcza2 d.54.1.1 (A:1-160) bet 8.4 70 0.0051 12.9 2.3 22 13-34 124-145 (160)
2 d1kkoa2 d.54.1.1 (A:1-160) bet 6.2 91 0.0066 12.3 2.2 22 12-33 123-144 (160)
3 d1n11a_ d.211.1.1 (A:) Ankyrin 3.3 1.5E+02 0.011 11.2 1.1 17 12-28 360-376 (408)
4 d1pgja1 a.100.1.1 (A:179-478) 3.1 1.6E+02 0.012 11.1 1.7 10 18-27 12-21 (300)
5 d1d5ya1 a.4.1.8 (A:3-56) Rob t 3.0 1.7E+02 0.012 11.0 1.6 19 3-21 33-51 (54)
6 d1tg6a1 c.14.1.1 (A:1-193) Clp 2.7 1.1E+02 0.0077 12.0 -0.8 10 15-24 176-185 (193)
7 d1bl0a1 a.4.1.8 (A:9-62) MarA 2.5 1.9E+02 0.014 10.7 1.6 19 3-21 33-51 (54)
8 d2oara1 f.16.1.1 (A:10-118) Ga 2.5 1.9E+02 0.014 10.7 1.1 24 14-37 53-77 (109)
9 d1aipc1 a.5.2.2 (C:2-53) Elong 2.3 2E+02 0.015 10.5 1.3 18 2-20 2-19 (52)
10 d2cbya1 c.14.1.1 (A:15-193) Cl 2.2 1.3E+02 0.0096 11.5 -0.8 7 18-24 166-172 (179)
No 1
>d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]}
Probab=8.42 E-value=70 Score=12.93 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=15.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4683399999999999999999
Q gi|254780733|r 13 ESGATAIEYGLLASLIAVAIIA 34 (56)
Q Consensus 13 e~GaTAIEYgLIaalIav~ii~ 34 (56)
.+=-|||+||+=-+|..-+.-.
T Consensus 124 ~~LHtAiRYGvSQALL~A~A~a 145 (160)
T d1kcza2 124 NRLHTAIRYGITQAILDAVAKT 145 (160)
T ss_dssp EECCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6014889972899999999998
No 2
>d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}
Probab=6.19 E-value=91 Score=12.34 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=15.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3468339999999999999999
Q gi|254780733|r 12 DESGATAIEYGLLASLIAVAII 33 (56)
Q Consensus 12 De~GaTAIEYgLIaalIav~ii 33 (56)
..+=-|||+||+=-+|..-+.-
T Consensus 123 g~~LHtAiRYGvSQALL~A~A~ 144 (160)
T d1kkoa2 123 GNLLHTAVRYGLSQALLDATAL 144 (160)
T ss_dssp TEECCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8701388997289999999999
No 3
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.30 E-value=1.5e+02 Score=11.18 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=8.8
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 34683399999999999
Q gi|254780733|r 12 DESGATAIEYGLLASLI 28 (56)
Q Consensus 12 De~GaTAIEYgLIaalI 28 (56)
|.+|-|+++|+...+=+
T Consensus 360 d~~G~t~L~~A~~~~~~ 376 (408)
T d1n11a_ 360 SSDGTTPLAIAKRLGYI 376 (408)
T ss_dssp CSSSCCHHHHHHHTTCH
T ss_pred CCCCCCHHHHHHHCCCH
T ss_conf 99998999999983999
No 4
>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]}
Probab=3.07 E-value=1.6e+02 Score=11.05 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780733|r 18 AIEYGLLASL 27 (56)
Q Consensus 18 AIEYgLIaal 27 (56)
.||||.+-.+
T Consensus 12 gIEy~~mq~i 21 (300)
T d1pgja1 12 SGEYAILQIW 21 (300)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 3989999999
No 5
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.96 E-value=1.7e+02 Score=10.99 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.1
Q ss_pred HHHHHHHHHCCCCCCHHHH
Q ss_conf 5999999503468339999
Q gi|254780733|r 3 MNIVKDFLKDESGATAIEY 21 (56)
Q Consensus 3 m~~~~~f~~De~GaTAIEY 21 (56)
.+.+.|.++.+-|-|-.||
T Consensus 33 ~~~l~r~Fk~~~g~tp~~y 51 (54)
T d1d5ya1 33 KWHLQRMFKDVTGHAIGAY 51 (54)
T ss_dssp HHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHH
T ss_conf 9999999999999099999
No 6
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=2.70 E-value=1.1e+02 Score=12.01 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=4.3
Q ss_pred CCCHHHHHHH
Q ss_conf 8339999999
Q gi|254780733|r 15 GATAIEYGLL 24 (56)
Q Consensus 15 GaTAIEYgLI 24 (56)
+.-|+|||++
T Consensus 176 a~EAl~yGli 185 (193)
T d1tg6a1 176 PMEAQEFGIL 185 (193)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHCCCC
T ss_conf 9999983999
No 7
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=2.52 E-value=1.9e+02 Score=10.70 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.2
Q ss_pred HHHHHHHHHCCCCCCHHHH
Q ss_conf 5999999503468339999
Q gi|254780733|r 3 MNIVKDFLKDESGATAIEY 21 (56)
Q Consensus 3 m~~~~~f~~De~GaTAIEY 21 (56)
-+.+.|.++...|-|-.||
T Consensus 33 ~~~l~r~Fk~~~g~tp~~Y 51 (54)
T d1bl0a1 33 KWHLQRMFKKETGHSLGQY 51 (54)
T ss_dssp HHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHH
T ss_conf 9999999999999199999
No 8
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.46 E-value=1.9e+02 Score=10.66 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=15.9
Q ss_pred CCCCHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 683399999-999999999999999
Q gi|254780733|r 14 SGATAIEYG-LLASLIAVAIIASVT 37 (56)
Q Consensus 14 ~GaTAIEYg-LIaalIav~ii~av~ 37 (56)
.|+..+.|| .+-++|.-.|++.+-
T Consensus 53 ~~~~~i~~G~fi~a~InFlIiA~vv 77 (109)
T d2oara1 53 GGGQTIDLNVLLSAAINFFLIAFAV 77 (109)
T ss_dssp CSCEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEHHHHHHHHHHHHHHHHHH
T ss_conf 7872343889999999999999999
No 9
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=2.32 E-value=2e+02 Score=10.55 Aligned_cols=18 Identities=22% Similarity=0.697 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q ss_conf 2599999950346833999
Q gi|254780733|r 2 KMNIVKDFLKDESGATAIE 20 (56)
Q Consensus 2 ~m~~~~~f~~De~GaTAIE 20 (56)
.|..++.+ |++.|+...+
T Consensus 2 ~~elvK~L-R~~Tga~~~d 19 (52)
T d1aipc1 2 QMELIKKL-REATGAGMMD 19 (52)
T ss_dssp HHHHHHHH-HHHHCCCHHH
T ss_pred HHHHHHHH-HHHHCCCHHH
T ss_conf 18899999-9986987999
No 10
>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.24 E-value=1.3e+02 Score=11.51 Aligned_cols=7 Identities=57% Similarity=1.284 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780733|r 18 AIEYGLL 24 (56)
Q Consensus 18 AIEYgLI 24 (56)
|+|||++
T Consensus 166 A~~~Gli 172 (179)
T d2cbya1 166 ALEYGFV 172 (179)
T ss_dssp HHHHTSC
T ss_pred HHHCCCC
T ss_conf 9985998
Done!