RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780733|ref|YP_003065146.1| hypothetical protein
CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.2 bits (60), Expect = 0.92
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 7/33 (21%)

Query: 6   VKDFLKDESGATAIEYGLLASLIAVAIIASVTT 38
           ++ +L    GAT    GL+    AVAI A   +
Sbjct: 263 LRSYL---KGATGHSQGLVT---AVAI-AETDS 288


>3bcy_A Protein YER067W; mixed alpha-helix/beta-sheet fold, UBL
          conjugation, unknown function; 1.70A {Saccharomyces
          cerevisiae}
          Length = 155

 Score = 25.9 bits (57), Expect = 2.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 32 IIASVTTLGGKLSKVFEDIE 51
          ++ +VTT  G+  KVFED++
Sbjct: 4  MVQTVTTEDGETVKVFEDLQ 23


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.135    0.344 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 426,271
Number of extensions: 12992
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 4
Length of query: 56
Length of database: 5,693,230
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,014,398
Effective search space: 140403144
Effective search space used: 140403144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)