BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62] (56 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62] Length = 56 Score = 107 bits (268), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 56/56 (100%), Positives = 56/56 (100%) Query: 1 MKMNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDIEKGIKA 56 MKMNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDIEKGIKA Sbjct: 1 MKMNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDIEKGIKA 56 >gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter asiaticus str. psy62] Length = 58 Score = 87.8 bits (216), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 44/51 (86%), Positives = 48/51 (94%) Query: 1 MKMNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDIE 51 MKM+IVK+FL+DESGATAIEYGLLASLIAVAIIASVTTLGGKL+ VF DI Sbjct: 1 MKMHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADIS 51 >gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str. psy62] Length = 62 Score = 85.1 bits (209), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 43/54 (79%), Positives = 47/54 (87%) Query: 1 MKMNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDIEKGI 54 MKM+IVK+FL+DESGATAIEYGLL SLIAV II SVTTLGGKL K FE I+K I Sbjct: 1 MKMHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAIDKAI 54 >gi|254780730|ref|YP_003065143.1| hypothetical protein CLIBASIA_03085 [Candidatus Liberibacter asiaticus str. psy62] Length = 120 Score = 69.7 bits (169), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 32/50 (64%), Positives = 43/50 (86%) Query: 1 MKMNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDI 50 MKMNI+K LK+ SGATAIEYGLLASL++VAII++V+TLG ++ V++ I Sbjct: 1 MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTI 50 >gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter asiaticus str. psy62] Length = 60 Score = 41.2 bits (95), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/46 (65%), Positives = 35/46 (76%) Query: 4 NIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFED 49 N + LKDESGA AIEYG+L +LIAVAIIA+VT LGG L FE+ Sbjct: 3 NCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEE 48 >gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter asiaticus str. psy62] Length = 75 Score = 25.0 bits (53), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 26/31 (83%) Query: 20 EYGLLASLIAVAIIASVTTLGGKLSKVFEDI 50 EYG++A+LIAVAIIA+VT LGG L FE++ Sbjct: 6 EYGMMAALIAVAIIAAVTKLGGSLKGAFEEV 36 >gi|254780510|ref|YP_003064923.1| hypothetical protein CLIBASIA_01985 [Candidatus Liberibacter asiaticus str. psy62] Length = 137 Score = 21.9 bits (45), Expect = 2.3, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 2 KMNIVKDFLKDESGATAIEYGLLAS 26 K+NI+++ LKD +TA+ LAS Sbjct: 36 KINILREKLKDSINSTALMNPALAS 60 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.135 0.344 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,327 Number of Sequences: 1233 Number of extensions: 761 Number of successful extensions: 8 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8 length of query: 56 length of database: 328,796 effective HSP length: 28 effective length of query: 28 effective length of database: 294,272 effective search space: 8239616 effective search space used: 8239616 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.2 bits) S2: 31 (16.5 bits)