Query gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 62
No_of_seqs 106 out of 228
Neff 4.3
Searched_HMMs 33803
Date Wed Jun 1 15:01:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780734.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2wbi_A Acyl-COA dehydrogenase 17.2 40 0.0012 16.0 0.5 26 9-34 85-110 (276)
2 >1kcz_A Beta-methylaspartase; 7.9 1.8E+02 0.0052 12.7 2.3 20 12-31 123-142 (148)
3 >1n0q_A 3ANK, 3 ankyrin repeat 5.6 2.4E+02 0.0071 12.0 1.0 22 10-31 63-84 (93)
4 >2nxx_E Ecdysone receptor (ECR 5.6 2.4E+02 0.0071 12.0 2.3 22 9-30 23-44 (89)
5 >1kko_A 3-methylaspartate ammo 4.8 2.7E+02 0.0079 11.8 2.3 20 12-31 87-106 (112)
6 >3ci9_A Heat shock factor-bind 4.3 3E+02 0.0087 11.6 3.5 24 32-55 7-30 (48)
7 >1yqw_Q Periplasmic [NIFE] hyd 3.7 2.3E+02 0.0069 12.1 -0.2 18 9-26 61-79 (106)
8 >1m56_D Cytochrome C oxidase; 3.5 3.5E+02 0.01 11.2 1.3 18 17-34 33-50 (51)
9 >1wui_L Periplasmic [NIFE] hyd 3.5 3.5E+02 0.01 11.2 1.2 16 10-25 46-62 (90)
10 >3i6v_A Periplasmic His/Glu/Gl 3.5 77 0.0023 14.5 -2.8 9 13-21 33-41 (83)
No 1
>>2wbi_A Acyl-COA dehydrogenase family member 11; human, polymorphism, phosphoprotein, oxidoreductase, alternative splicing; HET: FAD; 2.80A {Homo sapiens} (A:1-111,A:264-428)
Probab=17.20 E-value=40 Score=15.99 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=21.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 96123683199999999999999999
Q gi|254780734|r 9 FLQDESGATAIEYGLLVSLIAVVIIT 34 (62)
Q Consensus 9 fl~De~GaTAIEYgLIaaLIav~ii~ 34 (62)
|+-++.|-|-.||++++-...-..++
T Consensus 85 ~lp~~~gl~~~eya~~~e~~g~s~~~ 110 (276)
T 2wbi_A 85 FLPAVSGLSHVDYALIAEETGKCFFA 110 (276)
T ss_dssp TCHHHHCCCHHHHHHHHHHHTTSTTH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 79641389889999999997530456
No 2
>>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} (A:1-148)
Probab=7.94 E-value=1.8e+02 Score=12.72 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=13.8
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 23683199999999999999
Q gi|254780734|r 12 DESGATAIEYGLLVSLIAVV 31 (62)
Q Consensus 12 De~GaTAIEYgLIaaLIav~ 31 (62)
.++=-|||+||+=-+|.-.+
T Consensus 123 g~rLhtAiRYGvSQalL~A~ 142 (148)
T 1kcz_A 123 GNRLHTAIRYGITQAILDAV 142 (148)
T ss_dssp TEECCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 94057899998999999999
No 3
>>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} (A:)
Probab=5.57 E-value=2.4e+02 Score=12.04 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=15.0
Q ss_pred HHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6123683199999999999999
Q gi|254780734|r 10 LQDESGATAIEYGLLVSLIAVV 31 (62)
Q Consensus 10 l~De~GaTAIEYgLIaaLIav~ 31 (62)
.+|+.|.|++.|+..-+-..++
T Consensus 63 ~~d~~g~T~Lh~A~~~~~~~~~ 84 (93)
T 1n0q_A 63 AKDKNGRTPLHLAARNGHLEVV 84 (93)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHH
T ss_pred CCCCCCCCHHHHHHHCCCHHHH
T ss_conf 3434447559999995889999
No 4
>>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum} (E:1-30,E:151-209)
Probab=5.56 E-value=2.4e+02 Score=12.04 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=17.4
Q ss_pred HHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9612368319999999999999
Q gi|254780734|r 9 FLQDESGATAIEYGLLVSLIAV 30 (62)
Q Consensus 9 fl~De~GaTAIEYgLIaaLIav 30 (62)
++.+|---+-.||+|+.|++-.
T Consensus 23 ~~~~~~~~d~~EyaLLkAIvLf 44 (89)
T 2nxx_E 23 YFQNEYEHDNAEYALLTAIVIF 44 (89)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9998745899999999999995
No 5
>>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} (A:1-14,A:51-148)
Probab=4.84 E-value=2.7e+02 Score=11.78 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=13.9
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 23683199999999999999
Q gi|254780734|r 12 DESGATAIEYGLLVSLIAVV 31 (62)
Q Consensus 12 De~GaTAIEYgLIaaLIav~ 31 (62)
..+=-|||+||+=-+|.-.+
T Consensus 87 g~rLHtAirYGvSQAlLdA~ 106 (112)
T 1kko_A 87 GNLLHTAVRYGLSQALLDAT 106 (112)
T ss_dssp TEECCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 94067899999999999999
No 6
>>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens} (A:)
Probab=4.32 E-value=3e+02 Score=11.57 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999974489999999996315
Q gi|254780734|r 32 IITSVTTLGGKLKKAFEAIDKAIV 55 (62)
Q Consensus 32 ii~av~~lG~~l~~~f~~v~~~l~ 55 (62)
+-..|..+=.++.+.|+.+++++-
T Consensus 7 Lt~~Vq~LLqQmQ~kFq~mSd~Ii 30 (48)
T 3ci9_A 7 LTSVVQTLLQQMQDKFQTISDQII 30 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998899999
No 7
>>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L (Q:1-62,Q:506-549)
Probab=3.67 E-value=2.3e+02 Score=12.09 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=13.2
Q ss_pred HHHCCCC-CCHHHHHHHHH
Q ss_conf 9612368-31999999999
Q gi|254780734|r 9 FLQDESG-ATAIEYGLLVS 26 (62)
Q Consensus 9 fl~De~G-aTAIEYgLIaa 26 (62)
+-||..| ....|.+||-.
T Consensus 61 prrd~~g~~g~~E~al~gt 79 (106)
T 1yqw_Q 61 PRRGAQGDKSPVEEALIGT 79 (106)
T ss_dssp GGCCTTCCCCHHHHHHTTC
T ss_pred HHCCCCCCHHHHHHHHCCC
T ss_conf 8833234666999995799
No 8
>>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} (D:)
Probab=3.55 E-value=3.5e+02 Score=11.21 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=11.7
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 199999999999999999
Q gi|254780734|r 17 TAIEYGLLVSLIAVVIIT 34 (62)
Q Consensus 17 TAIEYgLIaaLIav~ii~ 34 (62)
|-.-+..|+-||.++|+.
T Consensus 33 t~~~i~ii~~liFlAif~ 50 (51)
T 1m56_D 33 TWAAVVIVAALIFLALAN 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999962
No 9
>>1wui_L Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} (L:1-46,L:491-534)
Probab=3.53 E-value=3.5e+02 Score=11.20 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=11.9
Q ss_pred HHCCCC-CCHHHHHHHH
Q ss_conf 612368-3199999999
Q gi|254780734|r 10 LQDESG-ATAIEYGLLV 25 (62)
Q Consensus 10 l~De~G-aTAIEYgLIa 25 (62)
+||..| ....|.+||-
T Consensus 46 irD~~g~~Gp~E~aLig 62 (90)
T 1wui_L 46 IRCDKNKLSPVEASLIG 62 (90)
T ss_dssp HCCTTCCCCHHHHHHTT
T ss_pred HCCCCCCHHHHHHHHCC
T ss_conf 84324465599998379
No 10
>>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} (A:91-173)
Probab=3.46 E-value=77 Score=14.55 Aligned_cols=9 Identities=67% Similarity=1.032 Sum_probs=0.0
Q ss_pred CCCCCHHHH
Q ss_conf 368319999
Q gi|254780734|r 13 ESGATAIEY 21 (62)
Q Consensus 13 e~GaTAIEY 21 (62)
++|+|.+||
T Consensus 33 ~sGATLvEf 41 (83)
T 3i6v_A 33 ESGATLVEF 41 (83)
T ss_dssp HSSSEEEEE
T ss_pred CCCCEEEEE
T ss_conf 578458996
Done!