Query         gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 62
No_of_seqs    106 out of 228
Neff          4.3 
Searched_HMMs 23785
Date          Tue May 31 15:32:25 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780734.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2hi2_A Fimbrial protein; type    4.9 1.9E+02  0.0078   11.8   3.0   17   24-40      4-20  (158)
  2 1u8b_A ADA polyprotein; protei   4.8 1.9E+02   0.008   11.8   1.6   20    4-23    108-127 (133)
  3 2zih_A Vacuolar protein sortin   4.4 2.1E+02  0.0086   11.6   1.5   23    8-30     78-105 (347)
  4 1rh5_B Preprotein translocase    4.3 2.1E+02  0.0088   11.5   6.6   55    5-60     18-72  (74)
  5 1zcd_A Na(+)/H(+) antiporter 1   4.1 1.7E+02  0.0071   12.0   0.2   16    3-18      1-16  (388)
  6 1y7o_A ATP-dependent CLP prote   3.9      86  0.0036   13.5  -1.4   10   15-24    197-206 (218)
  7 3ci9_A Heat shock factor-bindi   3.8 2.3E+02  0.0098   11.3   3.5   23   33-55      8-30  (48)
  8 3p2l_A ATP-dependent CLP prote   3.7 1.2E+02  0.0052   12.7  -0.8   10   15-24    180-189 (201)
  9 1tg6_A Putative ATP-dependent    3.7 1.3E+02  0.0053   12.7  -0.8   12   14-25    231-242 (277)
 10 2jsp_A Transcriptional regulat   3.6 2.1E+02  0.0087   11.6   0.3   20    3-22     31-50  (87)

No 1  
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=4.93  E-value=1.9e+02  Score=11.81  Aligned_cols=17  Identities=12%  Similarity=0.362  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999974
Q gi|254780734|r   24 LVSLIAVVIITSVTTLG   40 (62)
Q Consensus        24 IaaLIav~ii~av~~lG   40 (62)
                      |==||.|+||+.+.+++
T Consensus         4 IELlVVIaIIgILaaia   20 (158)
T 2hi2_A            4 IELMIVIAIVGILAAVA   20 (158)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             28999999999999999


No 2  
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=4.83  E-value=1.9e+02  Score=11.77  Aligned_cols=20  Identities=10%  Similarity=0.253  Sum_probs=15.9

Q ss_pred             HHHHHHHHCCCCCCHHHHHH
Q ss_conf             99999961236831999999
Q gi|254780734|r    4 HIVKNFLQDESGATAIEYGL   23 (62)
Q Consensus         4 ~~i~~fl~De~GaTAIEYgL   23 (62)
                      .-+.|.+|.+-|.|-.||-.
T Consensus       108 ~~l~R~Fk~~~G~tp~~yl~  127 (133)
T 1u8b_A          108 FHLHRLFKATTGMTPKAWQQ  127 (133)
T ss_dssp             HHHHHHHHHHTSSCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHH
T ss_conf             99999999998929999999


No 3  
>2zih_A Vacuolar protein sorting-associated protein 74; beta hairpin, VPS, golgi localization, VPS74, tetramer, golgi apparatus, phosphoprotein; 2.80A {Saccharomyces cerevisiae} PDB: 2zii_A
Probab=4.39  E-value=2.1e+02  Score=11.60  Aligned_cols=23  Identities=30%  Similarity=0.332  Sum_probs=16.2

Q ss_pred             HHHHCCCCCC-----HHHHHHHHHHHHH
Q ss_conf             9961236831-----9999999999999
Q gi|254780734|r    8 NFLQDESGAT-----AIEYGLLVSLIAV   30 (62)
Q Consensus         8 ~fl~De~GaT-----AIEYgLIaaLIav   30 (62)
                      --++|++|..     .++|||-.+++.=
T Consensus        78 L~L~D~~G~~s~~~~~l~~aLaGAiL~E  105 (347)
T 2zih_A           78 MGLRDREGYLSFWNDSISYALRGCIIIE  105 (347)
T ss_dssp             HTCCSSSGGGSCCCHHHHHHHHHHHHHH
T ss_pred             HCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             6336788973235430899998999999


No 4  
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=4.28  E-value=2.1e+02  Score=11.55  Aligned_cols=55  Identities=13%  Similarity=0.062  Sum_probs=41.3

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999612368319999999999999999999997448999999999631577777
Q gi|254780734|r    5 IVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAIDKAIVTTSPA   60 (62)
Q Consensus         5 ~i~~fl~De~GaTAIEYgLIaaLIav~ii~av~~lG~~l~~~f~~v~~~l~~a~~a   60 (62)
                      --+|+++--+-.+.-||--++-..++.+ ..++.+|=-+.-.+.-+.+-+.+++++
T Consensus        18 ~~~rvlk~~~KP~~~Ef~~i~k~~~iG~-~i~G~IGf~Ikli~~~i~~iIk~~~~~   72 (74)
T 1rh5_B           18 ECRRVWLVLKKPTKDEYLAVAKVTALGI-SLLGIIGYIIHVPATYIKGILKPPTTP   72 (74)
T ss_dssp             HHHHHHHSEECCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             9999999944998999999999999999-999999999999999801456899999


No 5  
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=4.13  E-value=1.7e+02  Score=12.04  Aligned_cols=16  Identities=13%  Similarity=0.374  Sum_probs=11.8

Q ss_pred             HHHHHHHHHCCCCCCH
Q ss_conf             5999999612368319
Q gi|254780734|r    3 MHIVKNFLQDESGATA   18 (62)
Q Consensus         3 m~~i~~fl~De~GaTA   18 (62)
                      ||.++||+|.|....-
T Consensus         1 ~~~l~~f~~~e~~~gi   16 (388)
T 1zcd_A            1 MKHLHRFFSSDASGGI   16 (388)
T ss_dssp             --------CCSSHHHH
T ss_pred             CHHHHHHHHCCHHHHH
T ss_conf             9158999851036899


No 6  
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=3.94  E-value=86  Score=13.52  Aligned_cols=10  Identities=30%  Similarity=0.880  Sum_probs=4.8

Q ss_pred             CCCHHHHHHH
Q ss_conf             8319999999
Q gi|254780734|r   15 GATAIEYGLL   24 (62)
Q Consensus        15 GaTAIEYgLI   24 (62)
                      +.-|+|||||
T Consensus       197 a~EAleyGli  206 (218)
T 1y7o_A          197 AQETLEYGFI  206 (218)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHCCCC
T ss_conf             9999985998


No 7  
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=3.75  E-value=2.3e+02  Score=11.31  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999974489999999996315
Q gi|254780734|r   33 ITSVTTLGGKLKKAFEAIDKAIV   55 (62)
Q Consensus        33 i~av~~lG~~l~~~f~~v~~~l~   55 (62)
                      -..|..+=.++.+.|+.+++++-
T Consensus         8 t~~Vq~LL~QmQ~kFq~mSd~Ii   30 (48)
T 3ci9_A            8 TSVVQTLLQQMQDKFQTISDQII   30 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999998899999


No 8  
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp}
Probab=3.73  E-value=1.2e+02  Score=12.73  Aligned_cols=10  Identities=40%  Similarity=0.720  Sum_probs=4.4

Q ss_pred             CCCHHHHHHH
Q ss_conf             8319999999
Q gi|254780734|r   15 GATAIEYGLL   24 (62)
Q Consensus        15 GaTAIEYgLI   24 (62)
                      +.-|+|||+|
T Consensus       180 a~EAleyGli  189 (201)
T 3p2l_A          180 ADEAKAYGLI  189 (201)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHCCCC
T ss_conf             9999984998


No 9  
>1tg6_A Putative ATP-dependent CLP protease proteolytic subunit; mitochondrial CLPP, CLP/HSP 100, X-RAY crystallography, ATP- dependent protease; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=3.66  E-value=1.3e+02  Score=12.67  Aligned_cols=12  Identities=42%  Similarity=0.542  Sum_probs=6.9

Q ss_pred             CCCCHHHHHHHH
Q ss_conf             683199999999
Q gi|254780734|r   14 SGATAIEYGLLV   25 (62)
Q Consensus        14 ~GaTAIEYgLIa   25 (62)
                      +..-|+|||||-
T Consensus       231 sa~EA~eyGliD  242 (277)
T 1tg6_A          231 SPMEAQEFGILD  242 (277)
T ss_dssp             CHHHHHHHTSCS
T ss_pred             CHHHHHHCCCCC
T ss_conf             599999839987


No 10 
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=3.59  E-value=2.1e+02  Score=11.58  Aligned_cols=20  Identities=25%  Similarity=0.335  Sum_probs=17.0

Q ss_pred             HHHHHHHHHCCCCCCHHHHH
Q ss_conf             59999996123683199999
Q gi|254780734|r    3 MHIVKNFLQDESGATAIEYG   22 (62)
Q Consensus         3 m~~i~~fl~De~GaTAIEYg   22 (62)
                      +++++|.+...-|-|.=||=
T Consensus        31 ~k~LkRHL~~~hgltp~eYR   50 (87)
T 2jsp_A           31 FKSLKRHLTTHHSMTPEEYR   50 (87)
T ss_dssp             ESBHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHH
T ss_conf             55899998887198999999


Done!