Query gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 62
No_of_seqs 106 out of 228
Neff 4.3
Searched_HMMs 13730
Date Wed Jun 1 08:15:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780734.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kcza2 d.54.1.1 (A:1-160) bet 12.1 49 0.0035 13.6 2.3 24 12-35 123-146 (160)
2 d1kkoa2 d.54.1.1 (A:1-160) bet 7.1 79 0.0057 12.5 2.3 24 11-34 122-145 (160)
3 d2cqra1 a.4.1.3 (A:7-66) DnaJ 3.3 1.5E+02 0.011 11.1 1.4 28 32-59 23-50 (60)
4 d2pila_ d.24.1.1 (A:) Pilin Gc 3.3 1.5E+02 0.011 11.1 3.0 17 24-40 4-20 (158)
5 d1tg6a1 c.14.1.1 (A:1-193) Clp 3.1 88 0.0064 12.2 -0.8 10 15-24 176-185 (193)
6 d2cjja1 a.4.1.3 (A:8-70) Radia 3.1 1.6E+02 0.012 10.9 0.8 27 32-58 12-38 (63)
7 d1n11a_ d.211.1.1 (A:) Ankyrin 3.0 1.6E+02 0.012 10.9 1.0 16 12-27 360-375 (408)
8 d1jvra_ a.61.1.2 (A:) HTLV-II 2.8 1.1E+02 0.0083 11.7 -0.5 26 4-29 49-74 (137)
9 d1aipc1 a.5.2.2 (C:2-53) Elong 2.6 1.8E+02 0.013 10.7 1.4 18 2-20 2-19 (52)
10 d2cbya1 c.14.1.1 (A:15-193) Cl 2.6 1.1E+02 0.0081 11.7 -0.8 7 18-24 166-172 (179)
No 1
>d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]}
Probab=12.13 E-value=49 Score=13.57 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=16.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 236831999999999999999999
Q gi|254780734|r 12 DESGATAIEYGLLVSLIAVVIITS 35 (62)
Q Consensus 12 De~GaTAIEYgLIaaLIav~ii~a 35 (62)
.++=-|||+||+=-+|...+.-..
T Consensus 123 g~~LHtAiRYGvSQALL~A~A~a~ 146 (160)
T d1kcza2 123 GNRLHTAIRYGITQAILDAVAKTR 146 (160)
T ss_dssp TEECCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 860148899728999999999982
No 2
>d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}
Probab=7.10 E-value=79 Score=12.50 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=16.4
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 123683199999999999999999
Q gi|254780734|r 11 QDESGATAIEYGLLVSLIAVVIIT 34 (62)
Q Consensus 11 ~De~GaTAIEYgLIaaLIav~ii~ 34 (62)
..++=-|||+||+=-+|...+.-.
T Consensus 122 ~g~~LHtAiRYGvSQALL~A~A~a 145 (160)
T d1kkoa2 122 DGNLLHTAVRYGLSQALLDATALA 145 (160)
T ss_dssp TTEECCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 887013889972899999999998
No 3
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.30 E-value=1.5e+02 Score=11.08 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999744899999999963157777
Q gi|254780734|r 32 IITSVTTLGGKLKKAFEAIDKAIVTTSP 59 (62)
Q Consensus 32 ii~av~~lG~~l~~~f~~v~~~l~~a~~ 59 (62)
++-+|..+|......|+.|+..|++-++
T Consensus 23 L~~~v~~~~~~~~~~W~~IA~~l~~Rt~ 50 (60)
T d2cqra1 23 LELALQQYPRGSSDCWDKIARCVPSKSK 50 (60)
T ss_dssp HHHHHHHSCSSSHHHHHHHGGGCSSSCH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCCCH
T ss_conf 9999998088664599999988499999
No 4
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=3.28 E-value=1.5e+02 Score=11.06 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999974
Q gi|254780734|r 24 LVSLIAVVIITSVTTLG 40 (62)
Q Consensus 24 IaaLIav~ii~av~~lG 40 (62)
|==||.++||+.+.+++
T Consensus 4 IELlVViaIIgILaaia 20 (158)
T d2pila_ 4 IELMIVIAIVGILAAVA 20 (158)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 49999999999999999
No 5
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=3.13 E-value=88 Score=12.25 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=4.3
Q ss_pred CCCHHHHHHH
Q ss_conf 8319999999
Q gi|254780734|r 15 GATAIEYGLL 24 (62)
Q Consensus 15 GaTAIEYgLI 24 (62)
+.-|+|||++
T Consensus 176 a~EAl~yGli 185 (193)
T d1tg6a1 176 PMEAQEFGIL 185 (193)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHCCCC
T ss_conf 9999983999
No 6
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=3.06 E-value=1.6e+02 Score=10.94 Aligned_cols=27 Identities=4% Similarity=0.147 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999974489999999996315777
Q gi|254780734|r 32 IITSVTTLGGKLKKAFEAIDKAIVTTS 58 (62)
Q Consensus 32 ii~av~~lG~~l~~~f~~v~~~l~~a~ 58 (62)
++-++..+|....+.|..|+..+++-+
T Consensus 12 L~~~v~~~~~~~~~~W~~Ia~~l~gRt 38 (63)
T d2cjja1 12 FERALAVYDKDTPDRWANVARAVEGRT 38 (63)
T ss_dssp HHHHHHHSCTTCTTHHHHHHHHSTTCC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCCC
T ss_conf 999999977788349999998959999
No 7
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.03 E-value=1.6e+02 Score=10.92 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=7.8
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 2368319999999999
Q gi|254780734|r 12 DESGATAIEYGLLVSL 27 (62)
Q Consensus 12 De~GaTAIEYgLIaaL 27 (62)
|.+|-|+++|+...+=
T Consensus 360 d~~G~t~L~~A~~~~~ 375 (408)
T d1n11a_ 360 SSDGTTPLAIAKRLGY 375 (408)
T ss_dssp CSSSCCHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHCCC
T ss_conf 9999899999998399
No 8
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=2.79 E-value=1.1e+02 Score=11.68 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=15.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99999961236831999999999999
Q gi|254780734|r 4 HIVKNFLQDESGATAIEYGLLVSLIA 29 (62)
Q Consensus 4 ~~i~~fl~De~GaTAIEYgLIaaLIa 29 (62)
++++.+++-.-=---|.|-|+++||-
T Consensus 49 ~flklalkTpvwl~Pi~ySlla~liP 74 (137)
T d1jvra_ 49 RFLKLALKTPIWLNPIDYSLLASLIP 74 (137)
T ss_dssp HHHHHHHTCTTSTTTTCTTTHHHHSC
T ss_pred HHHHHHHHCCCCCCCCCCCHHHCCCC
T ss_conf 99999983853126601001012378
No 9
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=2.60 E-value=1.8e+02 Score=10.65 Aligned_cols=18 Identities=22% Similarity=0.671 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q ss_conf 1599999961236831999
Q gi|254780734|r 2 KMHIVKNFLQDESGATAIE 20 (62)
Q Consensus 2 ~m~~i~~fl~De~GaTAIE 20 (62)
.|++++.+ |++.|+...+
T Consensus 2 ~~elvK~L-R~~Tga~~~d 19 (52)
T d1aipc1 2 QMELIKKL-REATGAGMMD 19 (52)
T ss_dssp HHHHHHHH-HHHHCCCHHH
T ss_pred HHHHHHHH-HHHHCCCHHH
T ss_conf 18899999-9986987999
No 10
>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.57 E-value=1.1e+02 Score=11.72 Aligned_cols=7 Identities=57% Similarity=1.284 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780734|r 18 AIEYGLL 24 (62)
Q Consensus 18 AIEYgLI 24 (62)
|+|||++
T Consensus 166 A~~~Gli 172 (179)
T d2cbya1 166 ALEYGFV 172 (179)
T ss_dssp HHHHTSC
T ss_pred HHHCCCC
T ss_conf 9985998
Done!