BLAST/PSIBLAST alignment of GI: 254780734 and GI: 33593020 at iteration 1
>gi|33593020|ref|NP_880664.1| hypothetical protein BP1991 [Bordetella pertussis Tohama I] Length = 58
>gi|33563395|emb|CAE42271.1| putative membrane protein [Bordetella pertussis Tohama I] Length = 58
>gi|332382432|gb|AEE67279.1| hypothetical protein BPTD_1961 [Bordetella pertussis CS] Length = 58
 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 38/54 (70%)

Query: 6  VKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAIDKAIVTTSP 59
          +KNF +DE GATAIEYGL+V LIAVVII SV+ LG  LK  F+ I   +   +P
Sbjct: 5  LKNFWRDEEGATAIEYGLIVGLIAVVIIGSVSLLGETLKGFFDTIQTELSAEAP 58