RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component
[Candidatus Liberibacter asiaticus str. psy62]
         (62 letters)



>gnl|CDD|171347 PRK11923, algU, RNA polymerase sigma factor AlgU; Provisional.
          Length = 193

 Score = 24.8 bits (54), Expect = 5.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 22  GLLVSLIAVVIITSVTTLGGKLKKAFEAIDKAI 54
           GL    IA V+   V T+  ++ +A EAIDKA+
Sbjct: 154 GLSYEDIASVMQCPVGTVRSRIFRAREAIDKAL 186


>gnl|CDD|129436 TIGR00336, pyrE, orotate phosphoribosyltransferase.  The conserved
           Lys (K) residue at position 101 of the seed alignment
           has been proposed as the active site for the enzyme.
          Length = 173

 Score = 24.3 bits (53), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 30  VVIITSVTTLGGKLKKAFEAIDKA 53
           VV++  V T G  + +A E I  A
Sbjct: 111 VVVVEDVITTGTSILEAVEIIQAA 134


>gnl|CDD|177576 PHA03286, PHA03286, envelope glycoprotein E; Provisional.
          Length = 492

 Score = 24.1 bits (52), Expect = 9.3
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 13  ESGATAIEYGLLVSLIAVVIITSVTTLG 40
           + G T I Y LLVS +A   I  V    
Sbjct: 382 KEGPTVI-YSLLVSSMAAGAILVVLLFA 408


>gnl|CDD|184151 PRK13570, PRK13570, anthranilate synthase component I; Provisional.
          Length = 455

 Score = 23.8 bits (52), Expect = 9.6
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)

Query: 33  ITSVTTLGGKLKKAFEAIDKAIVTTSPA 60
           + S  +  G L+    A D A+  T PA
Sbjct: 344 LVSEVS--GTLRPGLTAFD-ALKATLPA 368


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.131    0.336 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 913,239
Number of extensions: 42601
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 17
Length of query: 62
Length of database: 5,994,473
Length adjustment: 34
Effective length of query: 28
Effective length of database: 5,259,801
Effective search space: 147274428
Effective search space used: 147274428
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)