Query         gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 75
No_of_seqs    105 out of 117
Neff          2.6 
Searched_HMMs 39220
Date          Sun May 29 21:47:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780735.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 pfam04964 Flp_Fap Flp/Fap pili  99.2 9.8E-12 2.5E-16   81.8   5.2   38    4-41     10-47  (47)
  2 COG3847 Flp Flp pilus assembly  99.0 5.3E-10 1.3E-14   72.8   5.8   41    4-44     17-57  (58)
  3 pfam12555 TPPK_C Thiamine pyro  62.4     8.4 0.00021   19.9   3.0   32    8-42     19-50  (53)
  4 TIGR02599 TIGR02599 Verrucomic  38.6      38 0.00096   16.5   3.3   39    9-47      4-63  (396)
  5 TIGR01711 gspJ general secreti  36.9      32  0.0008   16.9   2.6   18    7-24      3-20  (202)
  6 pfam05307 Bundlin Bundlin. Thi  34.5      41   0.001   16.3   2.9   20    4-23     16-35  (97)
  7 TIGR01960 ndhF3_CO2 NAD(P)H de  34.4      32 0.00082   16.8   2.4   22   11-32    282-303 (613)
  8 COG4662 TupA ABC-type tungstat  31.2      25 0.00063   17.4   1.3   43    5-47    151-198 (227)
  9 pfam12301 CD99L2 CD99 antigen   30.9      24 0.00062   17.5   1.2   27    3-29    106-132 (154)
 10 pfam04021 Class_IIIsignal Clas  30.3      42  0.0011   16.3   2.4   20    2-21      4-23  (28)
 11 pfam01271 Granin Granin (chrom  30.2      53  0.0013   15.7   3.5   55    1-56      1-57  (610)
 12 PRK13892 conjugal transfer pro  27.1      39   0.001   16.4   1.8   27   10-36     64-90  (141)
 13 COG0342 SecD Preprotein transl  25.4      65  0.0017   15.3   5.1   38    3-40    340-377 (506)
 14 TIGR00906 2A0303 cationic amin  25.2      65  0.0017   15.2   3.7   39    4-42    164-202 (616)
 15 PRK13871 conjugal transfer pro  25.0      40   0.001   16.3   1.5   28    9-36     53-80  (134)
 16 pfam09608 Alph_Pro_TM Putative  24.2      53  0.0014   15.7   2.0   13    6-18    213-225 (236)
 17 PRK10574 putative major pilin   23.3      72  0.0018   15.0   2.7   22    7-28      7-28  (146)
 18 KOG1622 consensus               22.5      51  0.0013   15.8   1.6   31   24-54    522-552 (552)
 19 PRK01026 tetrahydromethanopter  22.5      75  0.0019   15.0   3.1   22    5-26     50-71  (75)
 20 TIGR02186 alph_Pro_TM conserve  20.3      64  0.0016   15.3   1.8   13    5-17    251-263 (275)

No 1  
>pfam04964 Flp_Fap Flp/Fap pilin component.
Probab=99.24  E-value=9.8e-12  Score=81.81  Aligned_cols=38  Identities=50%  Similarity=0.753  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             79989999999999999999861048899999975421
Q gi|254780735|r    4 LYEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMS   41 (75)
Q Consensus         4 mvEYGLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~Ls   41 (75)
                      ++||||||+||||+||++++.+|++|+++|+.|+++|+
T Consensus        10 AIEYgLIaalIav~iI~~~~~~g~~l~~~f~~i~~~l~   47 (47)
T pfam04964        10 AIEYGLIAALIAVVIIAYVTTLGTALKTKFTSIGTALT   47 (47)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999970129889999886239


No 2  
>COG3847 Flp Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]
Probab=99.02  E-value=5.3e-10  Score=72.83  Aligned_cols=41  Identities=46%  Similarity=0.727  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             79989999999999999999861048899999975421667
Q gi|254780735|r    4 LYEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQT   44 (75)
Q Consensus         4 mvEYGLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~Ls~aT   44 (75)
                      .+|||||++||||++|+.++++++.|++.|+.|+++|+.+.
T Consensus        17 aiEYglia~lIav~ii~~~~~l~~~l~~~ft~i~~al~~a~   57 (58)
T COG3847          17 AIEYGLIAALIAVVIIAGGSTLGTALKGAFTAIGAALTGAA   57 (58)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999999999998999999999999870468


No 3  
>pfam12555 TPPK_C Thiamine pyrophosphokinase C terminal. This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=62.39  E-value=8.4  Score=19.87  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999998610488999999754216
Q gi|254780735|r    8 GMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSH   42 (75)
Q Consensus         8 GLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~Ls~   42 (75)
                      -.+++|+|++++..++..|+   ..|+.+.+.+++
T Consensus        19 lvla~Lva~~val~~s~~g~---~~~~~l~~~w~~   50 (53)
T pfam12555        19 LVLAALVALAVALLVSPAGQ---SFLDLLADRWND   50 (53)
T ss_pred             HHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHH
T ss_conf             99999999999998084229---999999999871


No 4  
>TIGR02599 TIGR02599 Verrucomicrobium spinosum paralogous family TIGR02599.
Probab=38.63  E-value=38  Score=16.49  Aligned_cols=39  Identities=15%  Similarity=0.422  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHCCCCCCC
Q ss_conf             999999999999999861048---------------------899999975421667789
Q gi|254780735|r    9 MMAALIAVAIIAAVTKLGGSL---------------------KGAFEEVANQMSHQTTKP   47 (75)
Q Consensus         9 LIaaLIAVaII~avt~lG~~L---------------------~~~F~~Ia~~Ls~aTttp   47 (75)
                      ||=-|++|+|++-+-+|=.++                     ..+|+.|+..|+.+|=-+
T Consensus         4 LvELLVSmtvLsilm~v~~~v~~~tq~tw~~a~ar~~qFREAR~AFEaisr~LsQATLN~   63 (396)
T TIGR02599         4 LVELLVSMTVLSILMLVLAQVLSQTQRTWRRATARAEQFREARAAFEAISRRLSQATLNA   63 (396)
T ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             202488999999999999887755888888645454654999999999853000234031


No 5  
>TIGR01711 gspJ general secretion pathway protein J; InterPro: IPR010055   This entry represents GspJ, one of two proteins highly conserved at their N-termini and described by Bacterial type II secretion system protein I/J but is easily separable phylogenetically. The other is the General secretion pathway protein I. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in Escherichia coli K-12 - present but not yet demonstrated to act on any target.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=36.88  E-value=32  Score=16.89  Aligned_cols=18  Identities=28%  Similarity=0.613  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999999998
Q gi|254780735|r    7 YGMMAALIAVAIIAAVTK   24 (75)
Q Consensus         7 YGLIaaLIAVaII~avt~   24 (75)
                      +-||=-|||+||.+.++.
T Consensus         3 FTLlE~LvAIAIFAsLs~   20 (202)
T TIGR01711         3 FTLLELLVAIAIFASLSL   20 (202)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             078889999999999999


No 6  
>pfam05307 Bundlin Bundlin. This family consists of several bundlin proteins from E. coli. Bundlin is a type IV pilin protein that is the only known structural component of enteropathogenic Escherichia coli bundle-forming pili (BFP). BFP play a role in virulence, antigenicity, autoaggregation, and localized adherence to epithelial cells.
Probab=34.54  E-value=41  Score=16.32  Aligned_cols=20  Identities=30%  Similarity=0.283  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             79989999999999999999
Q gi|254780735|r    4 LYEYGMMAALIAVAIIAAVT   23 (75)
Q Consensus         4 mvEYGLIaaLIAVaII~avt   23 (75)
                      |+|-.+.+||+|++|.+++-
T Consensus        16 LiE~~mVLal~A~vIAGvf~   35 (97)
T pfam05307        16 LIESAMVLALAATVTAGVMF   35 (97)
T ss_pred             HHHHHHHHHHHHHHHHHHHE
T ss_conf             99999999999999977510


No 7  
>TIGR01960 ndhF3_CO2 NAD(P)H dehydrogenase, subunit NdhF3 family; InterPro: IPR010217   This family represents NAD(P)H dehydrogenase subunit 5, or ndhF. It is restricted to two paralogs in each completed cyanobacterial genome, in which several subtypes of ndhF are found. Included in this family is NdhF3, shown to play a role in high-affinity CO2 uptake in Synechococcus sp. PCC7002. In all cases, neighbouring genes include a paralog of ndhD but do include other NAD(P)H dehydrogenase subunits. Instead, genes related to C02 uptake tend to be found nearby.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.
Probab=34.39  E-value=32  Score=16.83  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999861048899
Q gi|254780735|r   11 AALIAVAIIAAVTKLGGSLKGA   32 (75)
Q Consensus        11 aaLIAVaII~avt~lG~~L~~~   32 (75)
                      .|+.+..+|++||++|++|=..
T Consensus       282 vA~~~li~IG~VTAig~SLiaI  303 (613)
T TIGR01960       282 VALTVLIAIGSVTAIGASLIAI  303 (613)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999998985578887889999


No 8  
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]
Probab=31.22  E-value=25  Score=17.43  Aligned_cols=43  Identities=30%  Similarity=0.519  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99899999999-----99999999861048899999975421667789
Q gi|254780735|r    5 YEYGMMAALIA-----VAIIAAVTKLGGSLKGAFEEVANQMSHQTTKP   47 (75)
Q Consensus         5 vEYGLIaaLIA-----VaII~avt~lG~~L~~~F~~Ia~~Ls~aTttp   47 (75)
                      ..|||+++-++     |+-++..-.+|+|+...-..|.++.+-+|+|-
T Consensus       151 arf~l~aav~agfgR~V~EvG~AmmvGGnI~g~TR~itTAIslET~kG  198 (227)
T COG4662         151 ARFGLMAAVAAGFGRAVAEVGVAMMVGGNIRGRTRVITTAISLETNKG  198 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCC
T ss_conf             986799999998617999862776035751112233002443560345


No 9  
>pfam12301 CD99L2 CD99 antigen like protein 2. This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=30.88  E-value=24  Score=17.48  Aligned_cols=27  Identities=15%  Similarity=0.249  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             379989999999999999999861048
Q gi|254780735|r    3 RLYEYGMMAALIAVAIIAAVTKLGGSL   29 (75)
Q Consensus         3 GmvEYGLIaaLIAVaII~avt~lG~~L   29 (75)
                      +..|-|+|+++|+.+.++.+.++-.-+
T Consensus       106 ~~~~~G~IaGIvsAv~vAl~GAvSSyi  132 (154)
T pfam12301       106 GGAETGTIAGIVSAVAVALLGAVSSYI  132 (154)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             565776146799999999998899999


No 10 
>pfam04021 Class_IIIsignal Class III signal peptide. This family of archaeal proteins contains. an amino terminal motif QXSXEXXXL that has been suggested to be part of a class III signal sequence. With the Q being the +1 residue of the signal peptidase cleavage site. Two members of this family are cleaved by a type IV pilin-like signal peptidase.
Probab=30.34  E-value=42  Score=16.26  Aligned_cols=20  Identities=25%  Similarity=0.253  Sum_probs=13.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q ss_conf             23799899999999999999
Q gi|254780735|r    2 QRLYEYGMMAALIAVAIIAA   21 (75)
Q Consensus         2 QGmvEYGLIaaLIAVaII~a   21 (75)
                      |.-.||.++.+-+.++.+.+
T Consensus         4 Q~SlE~~lLi~~vlv~~~i~   23 (28)
T pfam04021         4 QISLEFLLLILAVLVVAIIA   23 (28)
T ss_pred             EEEHHHHHHHHHHHHHHHHH
T ss_conf             54399999999999999771


No 11 
>pfam01271 Granin Granin (chromogranin or secretogranin).
Probab=30.20  E-value=53  Score=15.73  Aligned_cols=55  Identities=16%  Similarity=0.224  Sum_probs=25.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             9237998999999999999999986-1048-899999975421667789856436788
Q gi|254780735|r    1 MQRLYEYGMMAALIAVAIIAAVTKL-GGSL-KGAFEEVANQMSHQTTKPPVTRPVTPT   56 (75)
Q Consensus         1 ~QGmvEYGLIaaLIAVaII~avt~l-G~~L-~~~F~~Ia~~Ls~aTttpp~t~p~tp~   56 (75)
                      ||.-+-|+|.++++..++|+....- .... -.+-.-|---|+|+.++| ...|.+|.
T Consensus         1 m~~a~~~~l~g~~~~~~v~~~pv~~~~~h~eemvtrCIiEVLSnaLsKp-~apPi~pE   57 (610)
T pfam01271         1 MQSAALLALLGCAGLAAVISLPVDSPANSFQTNVTKCIIEVLSNALSKS-SPSPIMPE   57 (610)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCCCCHH
T ss_conf             9446999987678887530146688655206799899999976543279-99998989


No 12 
>PRK13892 conjugal transfer protein TrbC; Provisional
Probab=27.08  E-value=39  Score=16.39  Aligned_cols=27  Identities=22%  Similarity=0.572  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999998610488999999
Q gi|254780735|r   10 MAALIAVAIIAAVTKLGGSLKGAFEEV   36 (75)
Q Consensus        10 IaaLIAVaII~avt~lG~~L~~~F~~I   36 (75)
                      -+++|++++-++.-..|+.+++.|..+
T Consensus        64 ~isiigiv~AGa~LIFGGElngF~RtL   90 (141)
T PRK13892         64 ALSIIGIVVAGGILIFGGELNGFFRTL   90 (141)
T ss_pred             HHHHHHHHHHCHHEEECCHHHHHHHHH
T ss_conf             999999998360015551277899999


No 13 
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=25.43  E-value=65  Score=15.26  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             37998999999999999999986104889999997542
Q gi|254780735|r    3 RLYEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQM   40 (75)
Q Consensus         3 GmvEYGLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~L   40 (75)
                      .-.+.|+||++++.+++..+..+=-.+.+++..++.-+
T Consensus       340 ~~i~~gi~Agl~g~~~V~vfm~~~Yr~~Gvia~ial~~  377 (506)
T COG0342         340 DSIKAGLIAGLIGLALVAVFMLLYYRLAGVIAAIALGL  377 (506)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78997899999999999999999998758999999999


No 14 
>TIGR00906 2A0303 cationic amino acid transport permease; InterPro: IPR004755 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment.   Some proteins in this family are low-affinity, high capacity permeases involved in the transport of arginine, lysine and ornithine, the cationinc amino acids.; GO: 0006865 amino acid transport, 0016021 integral to membrane.
Probab=25.25  E-value=65  Score=15.25  Aligned_cols=39  Identities=21%  Similarity=0.281  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             799899999999999999998610488999999754216
Q gi|254780735|r    4 LYEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSH   42 (75)
Q Consensus         4 mvEYGLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~Ls~   42 (75)
                      ++||==+.|.+-+.||+.+-.+|.+-+..||++.+.+|=
T Consensus       164 lA~~pD~~Av~l~~l~avl~~~G~K~Sa~vN~~f~~in~  202 (616)
T TIGR00906       164 LAEYPDFFAVILILLLAVLLALGVKESARVNKIFTIINL  202 (616)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             231202899999999999987065122358899999999


No 15 
>PRK13871 conjugal transfer protein TrbC; Provisional
Probab=25.02  E-value=40  Score=16.35  Aligned_cols=28  Identities=36%  Similarity=0.402  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999998610488999999
Q gi|254780735|r    9 MMAALIAVAIIAAVTKLGGSLKGAFEEV   36 (75)
Q Consensus         9 LIaaLIAVaII~avt~lG~~L~~~F~~I   36 (75)
                      .-.+||+|++-+++-..|+.||+.+..+
T Consensus        53 ~~ialiai~~AGa~LIFGGElN~F~RrL   80 (134)
T PRK13871         53 GFIALAAVAIAGAMLIFGGELNDFARRL   80 (134)
T ss_pred             HHHHHHHHHHHCCEEEECCCHHHHHHHH
T ss_conf             9999999998282357662088999999


No 16 
>pfam09608 Alph_Pro_TM Putative transmembrane protein (Alph_Pro_TM). This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.
Probab=24.16  E-value=53  Score=15.71  Aligned_cols=13  Identities=38%  Similarity=0.728  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9899999999999
Q gi|254780735|r    6 EYGMMAALIAVAI   18 (75)
Q Consensus         6 EYGLIaaLIAVaI   18 (75)
                      =|||++.+||+..
T Consensus       213 lYGl~av~iAi~~  225 (236)
T pfam09608       213 LYGLLAVALAIAA  225 (236)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999


No 17 
>PRK10574 putative major pilin subunit; Provisional
Probab=23.27  E-value=72  Score=15.04  Aligned_cols=22  Identities=18%  Similarity=0.539  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999999999986104
Q gi|254780735|r    7 YGMMAALIAVAIIAAVTKLGGS   28 (75)
Q Consensus         7 YGLIaaLIAVaII~avt~lG~~   28 (75)
                      +-||--+|.|+||+-+.+++--
T Consensus         7 ftLiElmivvaii~il~~ia~p   28 (146)
T PRK10574          7 FTLIELMVVIGIIAILSAIGIP   28 (146)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
T ss_conf             1658999999999999999999


No 18 
>KOG1622 consensus
Probab=22.55  E-value=51  Score=15.80  Aligned_cols=31  Identities=19%  Similarity=0.233  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             8610488999999754216677898564367
Q gi|254780735|r   24 KLGGSLKGAFEEVANQMSHQTTKPPVTRPVT   54 (75)
Q Consensus        24 ~lG~~L~~~F~~Ia~~Ls~aTttpp~t~p~t   54 (75)
                      .+-..+.+....|+--|-+-|+|||+|+-|-
T Consensus       522 kmvt~I~nkv~GIsRVlyDlTSKPPgTtEWE  552 (552)
T KOG1622         522 KMVTEICNKVPGISRVLYDLTSKPPGTTEWE  552 (552)
T ss_pred             HHHHHHHHCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf             9999998608547777763046999875789


No 19 
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=22.48  E-value=75  Score=14.95  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9989999999999999999861
Q gi|254780735|r    5 YEYGMMAALIAVAIIAAVTKLG   26 (75)
Q Consensus         5 vEYGLIaaLIAVaII~avt~lG   26 (75)
                      +=||++++|+-+.+...+..+.
T Consensus        50 IlYG~viGlli~~~~~~~~~~~   71 (75)
T PRK01026         50 ILYGLVIGLLIVLVYIKLLPIF   71 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999


No 20 
>TIGR02186 alph_Pro_TM conserved hypothetical protein; InterPro: IPR011734   This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome..
Probab=20.31  E-value=64  Score=15.30  Aligned_cols=13  Identities=46%  Similarity=0.833  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9989999999999
Q gi|254780735|r    5 YEYGMMAALIAVA   17 (75)
Q Consensus         5 vEYGLIaaLIAVa   17 (75)
                      .=|||.+++.||+
T Consensus       251 L~YGl~av~LA~~  263 (275)
T TIGR02186       251 LIYGLLAVLLAVV  263 (275)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             3899999999986


Done!