Query gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 75 No_of_seqs 105 out of 117 Neff 2.6 Searched_HMMs 39220 Date Sun May 29 21:47:07 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780735.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 pfam04964 Flp_Fap Flp/Fap pili 99.2 9.8E-12 2.5E-16 81.8 5.2 38 4-41 10-47 (47) 2 COG3847 Flp Flp pilus assembly 99.0 5.3E-10 1.3E-14 72.8 5.8 41 4-44 17-57 (58) 3 pfam12555 TPPK_C Thiamine pyro 62.4 8.4 0.00021 19.9 3.0 32 8-42 19-50 (53) 4 TIGR02599 TIGR02599 Verrucomic 38.6 38 0.00096 16.5 3.3 39 9-47 4-63 (396) 5 TIGR01711 gspJ general secreti 36.9 32 0.0008 16.9 2.6 18 7-24 3-20 (202) 6 pfam05307 Bundlin Bundlin. Thi 34.5 41 0.001 16.3 2.9 20 4-23 16-35 (97) 7 TIGR01960 ndhF3_CO2 NAD(P)H de 34.4 32 0.00082 16.8 2.4 22 11-32 282-303 (613) 8 COG4662 TupA ABC-type tungstat 31.2 25 0.00063 17.4 1.3 43 5-47 151-198 (227) 9 pfam12301 CD99L2 CD99 antigen 30.9 24 0.00062 17.5 1.2 27 3-29 106-132 (154) 10 pfam04021 Class_IIIsignal Clas 30.3 42 0.0011 16.3 2.4 20 2-21 4-23 (28) 11 pfam01271 Granin Granin (chrom 30.2 53 0.0013 15.7 3.5 55 1-56 1-57 (610) 12 PRK13892 conjugal transfer pro 27.1 39 0.001 16.4 1.8 27 10-36 64-90 (141) 13 COG0342 SecD Preprotein transl 25.4 65 0.0017 15.3 5.1 38 3-40 340-377 (506) 14 TIGR00906 2A0303 cationic amin 25.2 65 0.0017 15.2 3.7 39 4-42 164-202 (616) 15 PRK13871 conjugal transfer pro 25.0 40 0.001 16.3 1.5 28 9-36 53-80 (134) 16 pfam09608 Alph_Pro_TM Putative 24.2 53 0.0014 15.7 2.0 13 6-18 213-225 (236) 17 PRK10574 putative major pilin 23.3 72 0.0018 15.0 2.7 22 7-28 7-28 (146) 18 KOG1622 consensus 22.5 51 0.0013 15.8 1.6 31 24-54 522-552 (552) 19 PRK01026 tetrahydromethanopter 22.5 75 0.0019 15.0 3.1 22 5-26 50-71 (75) 20 TIGR02186 alph_Pro_TM conserve 20.3 64 0.0016 15.3 1.8 13 5-17 251-263 (275) No 1 >pfam04964 Flp_Fap Flp/Fap pilin component. Probab=99.24 E-value=9.8e-12 Score=81.81 Aligned_cols=38 Identities=50% Similarity=0.753 Sum_probs=36.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 79989999999999999999861048899999975421 Q gi|254780735|r 4 LYEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMS 41 (75) Q Consensus 4 mvEYGLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~Ls 41 (75) ++||||||+||||+||++++.+|++|+++|+.|+++|+ T Consensus 10 AIEYgLIaalIav~iI~~~~~~g~~l~~~f~~i~~~l~ 47 (47) T pfam04964 10 AIEYGLIAALIAVVIIAYVTTLGTALKTKFTSIGTALT 47 (47) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999999970129889999886239 No 2 >COG3847 Flp Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion] Probab=99.02 E-value=5.3e-10 Score=72.83 Aligned_cols=41 Identities=46% Similarity=0.727 Sum_probs=39.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 79989999999999999999861048899999975421667 Q gi|254780735|r 4 LYEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQT 44 (75) Q Consensus 4 mvEYGLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~Ls~aT 44 (75) .+|||||++||||++|+.++++++.|++.|+.|+++|+.+. T Consensus 17 aiEYglia~lIav~ii~~~~~l~~~l~~~ft~i~~al~~a~ 57 (58) T COG3847 17 AIEYGLIAALIAVVIIAGGSTLGTALKGAFTAIGAALTGAA 57 (58) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999999999999998999999999999870468 No 3 >pfam12555 TPPK_C Thiamine pyrophosphokinase C terminal. This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme. Probab=62.39 E-value=8.4 Score=19.87 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=24.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999998610488999999754216 Q gi|254780735|r 8 GMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSH 42 (75) Q Consensus 8 GLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~Ls~ 42 (75) -.+++|+|++++..++..|+ ..|+.+.+.+++ T Consensus 19 lvla~Lva~~val~~s~~g~---~~~~~l~~~w~~ 50 (53) T pfam12555 19 LVLAALVALAVALLVSPAGQ---SFLDLLADRWND 50 (53) T ss_pred HHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHH T ss_conf 99999999999998084229---999999999871 No 4 >TIGR02599 TIGR02599 Verrucomicrobium spinosum paralogous family TIGR02599. Probab=38.63 E-value=38 Score=16.49 Aligned_cols=39 Identities=15% Similarity=0.422 Sum_probs=25.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHCCCCCCC Q ss_conf 999999999999999861048---------------------899999975421667789 Q gi|254780735|r 9 MMAALIAVAIIAAVTKLGGSL---------------------KGAFEEVANQMSHQTTKP 47 (75) Q Consensus 9 LIaaLIAVaII~avt~lG~~L---------------------~~~F~~Ia~~Ls~aTttp 47 (75) ||=-|++|+|++-+-+|=.++ ..+|+.|+..|+.+|=-+ T Consensus 4 LvELLVSmtvLsilm~v~~~v~~~tq~tw~~a~ar~~qFREAR~AFEaisr~LsQATLN~ 63 (396) T TIGR02599 4 LVELLVSMTVLSILMLVLAQVLSQTQRTWRRATARAEQFREARAAFEAISRRLSQATLNA 63 (396) T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 202488999999999999887755888888645454654999999999853000234031 No 5 >TIGR01711 gspJ general secretion pathway protein J; InterPro: IPR010055 This entry represents GspJ, one of two proteins highly conserved at their N-termini and described by Bacterial type II secretion system protein I/J but is easily separable phylogenetically. The other is the General secretion pathway protein I. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in Escherichia coli K-12 - present but not yet demonstrated to act on any target.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex. Probab=36.88 E-value=32 Score=16.89 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=14.9 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 899999999999999998 Q gi|254780735|r 7 YGMMAALIAVAIIAAVTK 24 (75) Q Consensus 7 YGLIaaLIAVaII~avt~ 24 (75) +-||=-|||+||.+.++. T Consensus 3 FTLlE~LvAIAIFAsLs~ 20 (202) T TIGR01711 3 FTLLELLVAIAIFASLSL 20 (202) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 078889999999999999 No 6 >pfam05307 Bundlin Bundlin. This family consists of several bundlin proteins from E. coli. Bundlin is a type IV pilin protein that is the only known structural component of enteropathogenic Escherichia coli bundle-forming pili (BFP). BFP play a role in virulence, antigenicity, autoaggregation, and localized adherence to epithelial cells. Probab=34.54 E-value=41 Score=16.32 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=16.8 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 79989999999999999999 Q gi|254780735|r 4 LYEYGMMAALIAVAIIAAVT 23 (75) Q Consensus 4 mvEYGLIaaLIAVaII~avt 23 (75) |+|-.+.+||+|++|.+++- T Consensus 16 LiE~~mVLal~A~vIAGvf~ 35 (97) T pfam05307 16 LIESAMVLALAATVTAGVMF 35 (97) T ss_pred HHHHHHHHHHHHHHHHHHHE T ss_conf 99999999999999977510 No 7 >TIGR01960 ndhF3_CO2 NAD(P)H dehydrogenase, subunit NdhF3 family; InterPro: IPR010217 This family represents NAD(P)H dehydrogenase subunit 5, or ndhF. It is restricted to two paralogs in each completed cyanobacterial genome, in which several subtypes of ndhF are found. Included in this family is NdhF3, shown to play a role in high-affinity CO2 uptake in Synechococcus sp. PCC7002. In all cases, neighbouring genes include a paralog of ndhD but do include other NAD(P)H dehydrogenase subunits. Instead, genes related to C02 uptake tend to be found nearby.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport. Probab=34.39 E-value=32 Score=16.83 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=18.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999861048899 Q gi|254780735|r 11 AALIAVAIIAAVTKLGGSLKGA 32 (75) Q Consensus 11 aaLIAVaII~avt~lG~~L~~~ 32 (75) .|+.+..+|++||++|++|=.. T Consensus 282 vA~~~li~IG~VTAig~SLiaI 303 (613) T TIGR01960 282 VALTVLIAIGSVTAIGASLIAI 303 (613) T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999998985578887889999 No 8 >COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism] Probab=31.22 E-value=25 Score=17.43 Aligned_cols=43 Identities=30% Similarity=0.519 Sum_probs=32.9 Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 99899999999-----99999999861048899999975421667789 Q gi|254780735|r 5 YEYGMMAALIA-----VAIIAAVTKLGGSLKGAFEEVANQMSHQTTKP 47 (75) Q Consensus 5 vEYGLIaaLIA-----VaII~avt~lG~~L~~~F~~Ia~~Ls~aTttp 47 (75) ..|||+++-++ |+-++..-.+|+|+...-..|.++.+-+|+|- T Consensus 151 arf~l~aav~agfgR~V~EvG~AmmvGGnI~g~TR~itTAIslET~kG 198 (227) T COG4662 151 ARFGLMAAVAAGFGRAVAEVGVAMMVGGNIRGRTRVITTAISLETNKG 198 (227) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCC T ss_conf 986799999998617999862776035751112233002443560345 No 9 >pfam12301 CD99L2 CD99 antigen like protein 2. This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum. Probab=30.88 E-value=24 Score=17.48 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 379989999999999999999861048 Q gi|254780735|r 3 RLYEYGMMAALIAVAIIAAVTKLGGSL 29 (75) Q Consensus 3 GmvEYGLIaaLIAVaII~avt~lG~~L 29 (75) +..|-|+|+++|+.+.++.+.++-.-+ T Consensus 106 ~~~~~G~IaGIvsAv~vAl~GAvSSyi 132 (154) T pfam12301 106 GGAETGTIAGIVSAVAVALLGAVSSYI 132 (154) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 565776146799999999998899999 No 10 >pfam04021 Class_IIIsignal Class III signal peptide. This family of archaeal proteins contains. an amino terminal motif QXSXEXXXL that has been suggested to be part of a class III signal sequence. With the Q being the +1 residue of the signal peptidase cleavage site. Two members of this family are cleaved by a type IV pilin-like signal peptidase. Probab=30.34 E-value=42 Score=16.26 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=13.2 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 23799899999999999999 Q gi|254780735|r 2 QRLYEYGMMAALIAVAIIAA 21 (75) Q Consensus 2 QGmvEYGLIaaLIAVaII~a 21 (75) |.-.||.++.+-+.++.+.+ T Consensus 4 Q~SlE~~lLi~~vlv~~~i~ 23 (28) T pfam04021 4 QISLEFLLLILAVLVVAIIA 23 (28) T ss_pred EEEHHHHHHHHHHHHHHHHH T ss_conf 54399999999999999771 No 11 >pfam01271 Granin Granin (chromogranin or secretogranin). Probab=30.20 E-value=53 Score=15.73 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=25.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 9237998999999999999999986-1048-899999975421667789856436788 Q gi|254780735|r 1 MQRLYEYGMMAALIAVAIIAAVTKL-GGSL-KGAFEEVANQMSHQTTKPPVTRPVTPT 56 (75) Q Consensus 1 ~QGmvEYGLIaaLIAVaII~avt~l-G~~L-~~~F~~Ia~~Ls~aTttpp~t~p~tp~ 56 (75) ||.-+-|+|.++++..++|+....- .... -.+-.-|---|+|+.++| ...|.+|. T Consensus 1 m~~a~~~~l~g~~~~~~v~~~pv~~~~~h~eemvtrCIiEVLSnaLsKp-~apPi~pE 57 (610) T pfam01271 1 MQSAALLALLGCAGLAAVISLPVDSPANSFQTNVTKCIIEVLSNALSKS-SPSPIMPE 57 (610) T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCCCCHH T ss_conf 9446999987678887530146688655206799899999976543279-99998989 No 12 >PRK13892 conjugal transfer protein TrbC; Provisional Probab=27.08 E-value=39 Score=16.39 Aligned_cols=27 Identities=22% Similarity=0.572 Sum_probs=20.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999998610488999999 Q gi|254780735|r 10 MAALIAVAIIAAVTKLGGSLKGAFEEV 36 (75) Q Consensus 10 IaaLIAVaII~avt~lG~~L~~~F~~I 36 (75) -+++|++++-++.-..|+.+++.|..+ T Consensus 64 ~isiigiv~AGa~LIFGGElngF~RtL 90 (141) T PRK13892 64 ALSIIGIVVAGGILIFGGELNGFFRTL 90 (141) T ss_pred HHHHHHHHHHCHHEEECCHHHHHHHHH T ss_conf 999999998360015551277899999 No 13 >COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion] Probab=25.43 E-value=65 Score=15.26 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=29.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 37998999999999999999986104889999997542 Q gi|254780735|r 3 RLYEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQM 40 (75) Q Consensus 3 GmvEYGLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~L 40 (75) .-.+.|+||++++.+++..+..+=-.+.+++..++.-+ T Consensus 340 ~~i~~gi~Agl~g~~~V~vfm~~~Yr~~Gvia~ial~~ 377 (506) T COG0342 340 DSIKAGLIAGLIGLALVAVFMLLYYRLAGVIAAIALGL 377 (506) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 78997899999999999999999998758999999999 No 14 >TIGR00906 2A0303 cationic amino acid transport permease; InterPro: IPR004755 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Some proteins in this family are low-affinity, high capacity permeases involved in the transport of arginine, lysine and ornithine, the cationinc amino acids.; GO: 0006865 amino acid transport, 0016021 integral to membrane. Probab=25.25 E-value=65 Score=15.25 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=35.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 799899999999999999998610488999999754216 Q gi|254780735|r 4 LYEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSH 42 (75) Q Consensus 4 mvEYGLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~Ls~ 42 (75) ++||==+.|.+-+.||+.+-.+|.+-+..||++.+.+|= T Consensus 164 lA~~pD~~Av~l~~l~avl~~~G~K~Sa~vN~~f~~in~ 202 (616) T TIGR00906 164 LAEYPDFFAVILILLLAVLLALGVKESARVNKIFTIINL 202 (616) T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 231202899999999999987065122358899999999 No 15 >PRK13871 conjugal transfer protein TrbC; Provisional Probab=25.02 E-value=40 Score=16.35 Aligned_cols=28 Identities=36% Similarity=0.402 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999998610488999999 Q gi|254780735|r 9 MMAALIAVAIIAAVTKLGGSLKGAFEEV 36 (75) Q Consensus 9 LIaaLIAVaII~avt~lG~~L~~~F~~I 36 (75) .-.+||+|++-+++-..|+.||+.+..+ T Consensus 53 ~~ialiai~~AGa~LIFGGElN~F~RrL 80 (134) T PRK13871 53 GFIALAAVAIAGAMLIFGGELNDFARRL 80 (134) T ss_pred HHHHHHHHHHHCCEEEECCCHHHHHHHH T ss_conf 9999999998282357662088999999 No 16 >pfam09608 Alph_Pro_TM Putative transmembrane protein (Alph_Pro_TM). This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome. Probab=24.16 E-value=53 Score=15.71 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=8.0 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9899999999999 Q gi|254780735|r 6 EYGMMAALIAVAI 18 (75) Q Consensus 6 EYGLIaaLIAVaI 18 (75) =|||++.+||+.. T Consensus 213 lYGl~av~iAi~~ 225 (236) T pfam09608 213 LYGLLAVALAIAA 225 (236) T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 17 >PRK10574 putative major pilin subunit; Provisional Probab=23.27 E-value=72 Score=15.04 Aligned_cols=22 Identities=18% Similarity=0.539 Sum_probs=16.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999999999986104 Q gi|254780735|r 7 YGMMAALIAVAIIAAVTKLGGS 28 (75) Q Consensus 7 YGLIaaLIAVaII~avt~lG~~ 28 (75) +-||--+|.|+||+-+.+++-- T Consensus 7 ftLiElmivvaii~il~~ia~p 28 (146) T PRK10574 7 FTLIELMVVIGIIAILSAIGIP 28 (146) T ss_pred CCHHHHHHHHHHHHHHHHHHHH T ss_conf 1658999999999999999999 No 18 >KOG1622 consensus Probab=22.55 E-value=51 Score=15.80 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=22.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 8610488999999754216677898564367 Q gi|254780735|r 24 KLGGSLKGAFEEVANQMSHQTTKPPVTRPVT 54 (75) Q Consensus 24 ~lG~~L~~~F~~Ia~~Ls~aTttpp~t~p~t 54 (75) .+-..+.+....|+--|-+-|+|||+|+-|- T Consensus 522 kmvt~I~nkv~GIsRVlyDlTSKPPgTtEWE 552 (552) T KOG1622 522 KMVTEICNKVPGISRVLYDLTSKPPGTTEWE 552 (552) T ss_pred HHHHHHHHCCCCHHHHHHHCCCCCCCCCCCC T ss_conf 9999998608547777763046999875789 No 19 >PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional Probab=22.48 E-value=75 Score=14.95 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=16.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9989999999999999999861 Q gi|254780735|r 5 YEYGMMAALIAVAIIAAVTKLG 26 (75) Q Consensus 5 vEYGLIaaLIAVaII~avt~lG 26 (75) +=||++++|+-+.+...+..+. T Consensus 50 IlYG~viGlli~~~~~~~~~~~ 71 (75) T PRK01026 50 ILYGLVIGLLIVLVYIKLLPIF 71 (75) T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999 No 20 >TIGR02186 alph_Pro_TM conserved hypothetical protein; InterPro: IPR011734 This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.. Probab=20.31 E-value=64 Score=15.30 Aligned_cols=13 Identities=46% Similarity=0.833 Sum_probs=10.0 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9989999999999 Q gi|254780735|r 5 YEYGMMAALIAVA 17 (75) Q Consensus 5 vEYGLIaaLIAVa 17 (75) .=|||.+++.||+ T Consensus 251 L~YGl~av~LA~~ 263 (275) T TIGR02186 251 LIYGLLAVLLAVV 263 (275) T ss_pred HHHHHHHHHHHHH T ss_conf 3899999999986 Done!