Query gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 75
No_of_seqs 105 out of 117
Neff 2.6
Searched_HMMs 33803
Date Wed Jun 1 14:13:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780735.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2akh_Z Preprotein translocase 22.4 65 0.0019 14.9 4.2 37 8-44 31-67 (111)
2 >1t3c_A Neurotoxin type E; cat 14.4 1E+02 0.003 13.9 2.0 27 25-51 14-40 (77)
3 >3ffz_A Botulinum neurotoxin t 13.9 1E+02 0.003 13.9 1.8 28 25-52 14-41 (77)
4 >2d0o_A DIOL dehydratase-react 8.4 1.7E+02 0.0049 12.8 1.7 27 25-51 71-97 (164)
5 >1nbw_A Glycerol dehydratase r 6.6 2E+02 0.0061 12.3 2.0 28 25-52 70-97 (163)
6 >2ywb_A GMP synthase [glutamin 6.3 1.1E+02 0.0033 13.7 -0.3 13 41-53 108-120 (121)
7 >2dpl_A GMP synthetase, GMP sy 6.0 1.1E+02 0.0032 13.8 -0.5 13 41-53 106-118 (119)
8 >2w3l_A BCL2-XL, apoptosis reg 5.5 2.4E+02 0.0071 12.0 3.3 32 7-38 82-113 (144)
9 >2k3q_A TUSP1; eggcase SILK, s 5.2 2.3E+02 0.0068 12.1 0.8 29 15-43 40-68 (118)
10 >1gpm_A GMP synthetase, XMP am 5.2 2.5E+02 0.0074 11.9 2.6 25 29-53 89-120 (121)
No 1
>>2akh_Z Preprotein translocase SECE subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Z (Z:)
Probab=22.41 E-value=65 Score=14.94 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999999861048899999975421667
Q gi|254780735|r 8 GMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSHQT 44 (75)
Q Consensus 8 GLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~Ls~aT 44 (75)
++++.++....+...|.-|.++.+.|++.-.++.+-+
T Consensus 31 ~~~~~~i~a~~i~~~T~~G~~~~~f~~e~~~ElkKVv 67 (111)
T 2akh_Z 31 AVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVI 67 (111)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999984224489999999999978478
No 2
>>1t3c_A Neurotoxin type E; catalytic domain, E212Q mutant, light chain, hydrolase; 1.90A {Clostridium botulinum} (A:257-333)
Probab=14.41 E-value=1e+02 Score=13.92 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 610488999999754216677898564
Q gi|254780735|r 25 LGGSLKGAFEEVANQMSHQTTKPPVTR 51 (75)
Q Consensus 25 lG~~L~~~F~~Ia~~Ls~aTttpp~t~ 51 (75)
+-..+=+-|..|++.|+...++.|.--
T Consensus 14 ~~~~~l~~y~~IA~rLn~v~~~~~~i~ 40 (77)
T 1t3c_A 14 IYTNLLADYKKIASKLSKVQVSNPLLN 40 (77)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSCGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 999999999999999988636883178
No 3
>>3ffz_A Botulinum neurotoxin type E; botulinum neurotoxin serotype E, botulism, domain organization, endopeptidase, translocation, hydrolase; 2.65A {Clostridium botulinum} (A:258-334)
Probab=13.90 E-value=1e+02 Score=13.92 Aligned_cols=28 Identities=18% Similarity=0.423 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 6104889999997542166778985643
Q gi|254780735|r 25 LGGSLKGAFEEVANQMSHQTTKPPVTRP 52 (75)
Q Consensus 25 lG~~L~~~F~~Ia~~Ls~aTttpp~t~p 52 (75)
+-..+=+-|..|++.|+...++.|.--+
T Consensus 14 ~~~~~l~~y~~IA~rLn~v~~~~~~i~~ 41 (77)
T 3ffz_A 14 IYTNLLADYKKIASKLSKVQVSNPLLNP 41 (77)
T ss_dssp HHHHHHHHHHHHTTTSSSCCCSSTTSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 9999999999999988764078732789
No 4
>>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} (A:77-96,A:251-368,A:438-463)
Probab=8.44 E-value=1.7e+02 Score=12.81 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 610488999999754216677898564
Q gi|254780735|r 25 LGGSLKGAFEEVANQMSHQTTKPPVTR 51 (75)
Q Consensus 25 lG~~L~~~F~~Ia~~Ls~aTttpp~t~ 51 (75)
-|+|+.++|+.|-..|.+-|.+++...
T Consensus 71 ~GTNvGGMLErVRqtMA~LT~~~~~dI 97 (164)
T 2d0o_A 71 SGTNIGGMLEHVRQTMAELTNKPSSEI 97 (164)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred EECCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 624335311131024565465756776
No 5
>>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} (A:77-95,A:253-371,A:442-466)
Probab=6.61 E-value=2e+02 Score=12.33 Aligned_cols=28 Identities=21% Similarity=0.139 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 6104889999997542166778985643
Q gi|254780735|r 25 LGGSLKGAFEEVANQMSHQTTKPPVTRP 52 (75)
Q Consensus 25 lG~~L~~~F~~Ia~~Ls~aTttpp~t~p 52 (75)
-|+|+.++|+.|-..|.+-|.+++...-
T Consensus 70 ~GTNvGGMLErVRqtMA~LT~~~~~dI~ 97 (163)
T 1nbw_A 70 PGTHAGGMLERVRKVMASLTGHEMSAIY 97 (163)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred EEEECCCCCCEEEEEEEECCCCCCHHHH
T ss_conf 7630066311612101221577602523
No 6
>>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway; 2.10A {Thermus thermophilus HB8} PDB: 2ywc_A* (A:383-503)
Probab=6.29 E-value=1.1e+02 Score=13.69 Aligned_cols=13 Identities=38% Similarity=0.422 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 1667789856436
Q gi|254780735|r 41 SHQTTKPPVTRPV 53 (75)
Q Consensus 41 s~aTttpp~t~p~ 53 (75)
=+=|+|||+|.-|
T Consensus 108 YDiT~KPP~TiEw 120 (121)
T 2ywb_A 108 YDLTSKPPATIEW 120 (121)
T ss_dssp EECCCBTTSCSSC
T ss_pred EECCCCCCCCCCC
T ss_conf 8788989988567
No 7
>>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii OT3} PDB: 2z0c_A 3a4i_A (A:190-308)
Probab=5.99 E-value=1.1e+02 Score=13.76 Aligned_cols=13 Identities=38% Similarity=0.457 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 1667789856436
Q gi|254780735|r 41 SHQTTKPPVTRPV 53 (75)
Q Consensus 41 s~aTttpp~t~p~ 53 (75)
=+=|+|||+|.-|
T Consensus 106 YDiT~KPP~TiEw 118 (119)
T 2dpl_A 106 YDITNKPPATIEF 118 (119)
T ss_dssp EECCCBTTBCSSC
T ss_pred EECCCCCCCCCCC
T ss_conf 8778989988557
No 8
>>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A* (A:)
Probab=5.50 E-value=2.4e+02 Score=11.98 Aligned_cols=32 Identities=13% Similarity=0.284 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999861048899999975
Q gi|254780735|r 7 YGMMAALIAVAIIAAVTKLGGSLKGAFEEVAN 38 (75)
Q Consensus 7 YGLIaaLIAVaII~avt~lG~~L~~~F~~Ia~ 38 (75)
+|-|++|++.+-..++-..-.+.....+.|..
T Consensus 82 WGRIval~~F~~~la~~~~~~~~~~~v~~i~~ 113 (144)
T 2w3l_A 82 WGRIVAFFEFGGVMCVESVNREMSPLVDNIAL 113 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999999999999998589338999999
No 9
>>2k3q_A TUSP1; eggcase SILK, structural protein; NMR {Nephila antipodiana} (A:)
Probab=5.23 E-value=2.3e+02 Score=12.07 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999986104889999997542166
Q gi|254780735|r 15 AVAIIAAVTKLGGSLKGAFEEVANQMSHQ 43 (75)
Q Consensus 15 AVaII~avt~lG~~L~~~F~~Ia~~Ls~a 43 (75)
+++-|+..--=|.++...-+.|++.|+++
T Consensus 40 S~AEiav~EsgG~~~~~ktnai~~aL~~a 68 (118)
T 2k3q_A 40 SLADLLISESSGSSYQTQISALTNILSDC 68 (118)
T ss_dssp HHHHHHTTTTSSCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999713652999999999999999
No 10
>>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphatase, transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli K12} (A:405-525)
Probab=5.22 E-value=2.5e+02 Score=11.88 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCC-------CCCCCCCCCC
Q ss_conf 889999997542166-------7789856436
Q gi|254780735|r 29 LKGAFEEVANQMSHQ-------TTKPPVTRPV 53 (75)
Q Consensus 29 L~~~F~~Ia~~Ls~a-------Tttpp~t~p~ 53 (75)
|...-+.|.++..+- |+|||+|.-|
T Consensus 89 L~~is~~I~~~v~~VnRVvYDiT~KPP~TiEw 120 (121)
T 1gpm_A 89 LGRVSNRIINEVNGISRVVYDISGKPPATIEW 120 (121)
T ss_dssp HHHHHHHHHHHSTTEEEEEEECCCBTTSCSSC
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
T ss_conf 99999998652898026998689989978667
Done!