Query gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 75
No_of_seqs 105 out of 117
Neff 2.6
Searched_HMMs 13730
Date Wed Jun 1 07:30:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780735.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gpma3 d.52.2.1 (A:405-525) G 16.2 37 0.0027 14.2 2.6 12 42-53 109-120 (121)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 7.8 72 0.0052 12.7 2.9 18 9-26 3-20 (158)
3 d2d0oa2 c.55.1.6 (A:1-92,A:255 4.5 1.1E+02 0.0083 11.6 1.6 27 25-51 139-165 (241)
4 d1g5ma_ f.1.4.1 (A:) Bcl-2 {Hu 4.3 1.2E+02 0.0086 11.5 4.1 36 5-40 99-134 (164)
5 d1zy3a1 f.1.4.1 (A:1-170) Apop 3.8 1.3E+02 0.0096 11.3 4.1 37 5-41 90-126 (170)
6 d2b5ea2 c.47.1.2 (A:142-239) P 3.5 1.4E+02 0.01 11.1 1.9 17 27-43 30-46 (98)
7 d1ffya2 b.51.1.1 (A:201-394) I 2.9 1.4E+02 0.0099 11.2 -0.0 10 46-55 28-37 (194)
8 d2e9xd2 d.344.1.3 (D:166-223) 2.6 1.3E+02 0.0092 11.4 -0.4 15 2-16 38-52 (58)
9 d1tzyb_ a.22.1.1 (B:) Histone 2.5 1.8E+02 0.013 10.6 2.6 19 21-39 26-44 (92)
10 d1vf5c3 f.23.23.1 (C:250-286) 2.4 1.9E+02 0.014 10.4 2.1 15 6-20 6-20 (37)
No 1
>d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=16.25 E-value=37 Score=14.19 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCC
Q ss_conf 667789856436
Q gi|254780735|r 42 HQTTKPPVTRPV 53 (75)
Q Consensus 42 ~aTttpp~t~p~ 53 (75)
+-|+|||+|.-|
T Consensus 109 DiTsKPP~TiEw 120 (121)
T d1gpma3 109 DISGKPPATIEW 120 (121)
T ss_dssp ECCCBTTSCSSC
T ss_pred ECCCCCCCCCCC
T ss_conf 689988978546
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=7.85 E-value=72 Score=12.67 Aligned_cols=18 Identities=17% Similarity=0.512 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999861
Q gi|254780735|r 9 MMAALIAVAIIAAVTKLG 26 (75)
Q Consensus 9 LIaaLIAVaII~avt~lG 26 (75)
||--||.|+||+-+.+++
T Consensus 3 LIELlVViaIIgILaaia 20 (158)
T d2pila_ 3 LIELMIVIAIVGILAAVA 20 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 149999999999999999
No 3
>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Probab=4.52 E-value=1.1e+02 Score=11.61 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 610488999999754216677898564
Q gi|254780735|r 25 LGGSLKGAFEEVANQMSHQTTKPPVTR 51 (75)
Q Consensus 25 lG~~L~~~F~~Ia~~Ls~aTttpp~t~ 51 (75)
-|+++.++|++|-..|.+-|.+++...
T Consensus 139 ~GTNvGgMlerVRqtMA~LT~~~~~~I 165 (241)
T d2d0oa2 139 SGTNIGGMLEHVRQTMAELTNKPSSEI 165 (241)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 898611899999999986049984331
No 4
>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.33 E-value=1.2e+02 Score=11.53 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998999999999999999986104889999997542
Q gi|254780735|r 5 YEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQM 40 (75)
Q Consensus 5 vEYGLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~L 40 (75)
+-+|-|++|++.+-..++..+-.+.....+.|..-+
T Consensus 99 inWGRIVal~~F~~~la~~~~~~~~~~~v~~i~~~~ 134 (164)
T d1g5ma_ 99 VNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWM 134 (164)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 989999999999999999999859960899999999
No 5
>d1zy3a1 f.1.4.1 (A:1-170) Apoptosis regulator Bcl-w {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.81 E-value=1.3e+02 Score=11.29 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9989999999999999999861048899999975421
Q gi|254780735|r 5 YEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMS 41 (75)
Q Consensus 5 vEYGLIaaLIAVaII~avt~lG~~L~~~F~~Ia~~Ls 41 (75)
+-+|-|++|++.+-..++..+-.+.......|..-+.
T Consensus 90 inWGRIVal~~F~g~la~~~~~~~~~~~v~~i~~~~~ 126 (170)
T d1zy3a1 90 PNWGRLVAFFVFGAALCAESVNKEMEVLVGQVQEWMV 126 (170)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9699999999999999999998599258999999999
No 6
>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.46 E-value=1.4e+02 Score=11.12 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 04889999997542166
Q gi|254780735|r 27 GSLKGAFEEVANQMSHQ 43 (75)
Q Consensus 27 ~~L~~~F~~Ia~~Ls~a 43 (75)
.++|.+|..+++.|.+.
T Consensus 30 ~~fNeTF~~~A~~l~~D 46 (98)
T d2b5ea2 30 ADFNATFYSMANKHFND 46 (98)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHCC
T ss_conf 40518999999984146
No 7
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=2.88 E-value=1.4e+02 Score=11.22 Aligned_cols=10 Identities=30% Similarity=-0.080 Sum_probs=6.3
Q ss_pred CCCCCCCCCC
Q ss_conf 8985643678
Q gi|254780735|r 46 KPPVTRPVTP 55 (75)
Q Consensus 46 tpp~t~p~tp 55 (75)
-.|.|+|||-
T Consensus 28 ~iwTTtPwTl 37 (194)
T d1ffya2 28 IIWTTTPWTI 37 (194)
T ss_dssp CCEESCGGGS
T ss_pred EEECCCCCHH
T ss_conf 9964998446
No 8
>d2e9xd2 d.344.1.3 (D:166-223) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.64 E-value=1.3e+02 Score=11.39 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 237998999999999
Q gi|254780735|r 2 QRLYEYGMMAALIAV 16 (75)
Q Consensus 2 QGmvEYGLIaaLIAV 16 (75)
|-+.-|-.||.|++-
T Consensus 38 QHimrY~~ia~LV~~ 52 (58)
T d2e9xd2 38 QHLIRYKTIAPLVAS 52 (58)
T ss_dssp EEEEEHHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHC
T ss_conf 237862547788865
No 9
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=2.54 E-value=1.8e+02 Score=10.56 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9998610488999999754
Q gi|254780735|r 21 AVTKLGGSLKGAFEEVANQ 39 (75)
Q Consensus 21 avt~lG~~L~~~F~~Ia~~ 39 (75)
++..+-.=+++.|+.|+++
T Consensus 26 am~imnsfvndiferIa~E 44 (92)
T d1tzyb_ 26 AMGIMNSFVNDIFERIAGE 44 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 10
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.39 E-value=1.9e+02 Score=10.45 Aligned_cols=15 Identities=20% Similarity=0.089 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 989999999999999
Q gi|254780735|r 6 EYGMMAALIAVAIIA 20 (75)
Q Consensus 6 EYGLIaaLIAVaII~ 20 (75)
-+|||+-+.+|.+--
T Consensus 6 v~gl~~F~~~v~laQ 20 (37)
T d1vf5c3 6 VKWMIAFICLVMLAQ 20 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
Done!