RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780735|ref|YP_003065148.1| hypothetical protein
CLIBASIA_03110 [Candidatus Liberibacter asiaticus str. psy62]
         (75 letters)



>gnl|CDD|113726 pfam04964, Flp_Fap, Flp/Fap pilin component. 
          Length = 47

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 6  EYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMS 41
          EYG++AALIAV IIA VT LG +LK  F  +   ++
Sbjct: 12 EYGLIAALIAVVIIAYVTTLGTALKTKFTSIGTALT 47


>gnl|CDD|33638 COG3847, Flp, Flp pilus assembly protein, pilin Flp
          [Intracellular trafficking and secretion].
          Length = 58

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 19/36 (52%), Positives = 26/36 (72%)

Query: 6  EYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMS 41
          EYG++AALIAV IIA  + LG +LKGAF  +   ++
Sbjct: 19 EYGLIAALIAVVIIAGGSTLGTALKGAFTAIGAALT 54


>gnl|CDD|31687 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
           homolog [Translation, ribosomal structure and
           biogenesis].
          Length = 395

 Score = 26.5 bits (58), Expect = 1.5
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 8   GMMAALIA--VAIIAAVTKLGG-----SLKGAFEEVANQMSHQTTKPPVTRPVTPTSTEM 60
           G +A  +A  +AI A +    G     SL+   E+   ++  +  KPP          E 
Sbjct: 314 GKIARALAAKLAIAARIDAFSGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKER 373

Query: 61  PPRSR 65
           P R R
Sbjct: 374 PGRYR 378


>gnl|CDD|39657 KOG4456, KOG4456, KOG4456, Inner centromere protein (INCENP),
          C-terminal domain [Cell cycle control, cell division,
          chromosome partitioning].
          Length = 134

 Score = 25.5 bits (55), Expect = 3.5
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 34 EEVANQMSHQTTKPPVTRPVTPTSTEMPP 62
          E+ A   + +   P ++  +TPT    P 
Sbjct: 11 EKPAKAATAKPAPPVMSYKMTPTRVHKPK 39


>gnl|CDD|37555 KOG2344, KOG2344, KOG2344, Exocyst component protein and related
           proteins [Intracellular trafficking, secretion, and
           vesicular transport].
          Length = 623

 Score = 25.3 bits (55), Expect = 3.8
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 23  TKLGGSLKGAFEEVANQMSHQTTKPPVT 50
            +LG  ++  F E  + +   ++K PV 
Sbjct: 355 KRLGEGVRSIFVEFESAIRKDSSKTPVP 382


>gnl|CDD|40002 KOG4805, KOG4805, KOG4805, Uncharacterized conserved protein
          [Function unknown].
          Length = 719

 Score = 24.0 bits (51), Expect = 8.5
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 30 KGAFEEVANQMSHQTTKPPVTRPVTPTSTEMP 61
                 A   +   T    T+P  P+++ MP
Sbjct: 44 TTFNSTPAVSCATPLTVSLATKPSEPSASSMP 75


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.316    0.129    0.368 

Gapped
Lambda     K      H
   0.267   0.0779    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 867,527
Number of extensions: 33314
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 9
Length of query: 75
Length of database: 6,263,737
Length adjustment: 46
Effective length of query: 29
Effective length of database: 5,269,723
Effective search space: 152821967
Effective search space used: 152821967
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (22.9 bits)