Query gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 60
No_of_seqs 109 out of 244
Neff 4.6
Searched_HMMs 23785
Date Mon May 30 13:45:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780736.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l8w_A Uricase, urate oxidase; 11.8 86 0.0036 13.5 2.5 29 1-29 61-89 (296)
2 1u8b_A ADA polyprotein; protei 5.1 1.8E+02 0.0076 11.9 2.0 20 3-22 108-127 (133)
3 1y7o_A ATP-dependent CLP prote 3.8 90 0.0038 13.4 -1.5 10 14-23 197-206 (218)
4 2cqr_A RSGI RUH-043, DNAJ homo 3.7 2E+02 0.0085 11.6 0.3 28 31-58 29-56 (73)
5 3ci9_A Heat shock factor-bindi 3.6 2.4E+02 0.01 11.2 3.5 23 32-54 8-30 (48)
6 3p2l_A ATP-dependent CLP prote 3.6 1.3E+02 0.0055 12.6 -0.8 10 14-23 180-189 (201)
7 1tg6_A Putative ATP-dependent 3.5 1.3E+02 0.0056 12.6 -0.8 11 13-23 231-241 (277)
8 2zih_A Vacuolar protein sortin 3.3 2.6E+02 0.011 11.1 1.6 25 4-28 75-104 (347)
9 1sw6_A Regulatory protein SWI6 3.2 1.3E+02 0.0056 12.5 -1.0 11 11-21 161-171 (327)
10 3c0t_B Mediator of RNA polymer 3.0 2.2E+02 0.0093 11.4 -0.1 19 1-19 9-27 (33)
No 1
>3l8w_A Uricase, urate oxidase; oxidoreductase, URIC acid degradation, xanthine, inhibition aspergillus flavus, acetylation, peroxisome; HET: XAN 4PO; 1.00A {Aspergillus flavus} PDB: 3l9g_A* 3lbg_A* 3ld4_A* 3bk8_A* 1r4s_A* 1r51_A* 1r56_A 1r4u_A* 1ws2_A* 1ws3_A 1xt4_A* 1xxj_A* 1xy3_A* 2fub_A* 2fxl_A* 3bjp_A* 1wrr_A* 3gko_A* 2iba_A* 2ic0_A* ...
Probab=11.82 E-value=86 Score=13.50 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=23.5
Q ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 97999999503468239999999999999
Q gi|254780736|r 1 MINCMNKLLKDESGAAAIEYGMLVALIAV 29 (60)
Q Consensus 1 M~~~~~~f~~De~GaTAIEYgLIaalIav 29 (60)
|||.+..+.|...+.+.=+||+.++-=++
T Consensus 61 ~KNtVy~~Ak~~~~~s~E~F~~~L~~hFl 89 (296)
T 3l8w_A 61 IKNTIYITAKQNPVTPPELFGSILGTHFI 89 (296)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 49999999986799998999999999870
No 2
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=5.10 E-value=1.8e+02 Score=11.86 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=16.5
Q ss_pred HHHHHHHHCCCCCCHHHHHH
Q ss_conf 99999950346823999999
Q gi|254780736|r 3 NCMNKLLKDESGAAAIEYGM 22 (60)
Q Consensus 3 ~~~~~f~~De~GaTAIEYgL 22 (60)
..+.|.+|.+-|.|-.||-.
T Consensus 108 ~~l~R~Fk~~~G~tp~~yl~ 127 (133)
T 1u8b_A 108 FHLHRLFKATTGMTPKAWQQ 127 (133)
T ss_dssp HHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHH
T ss_conf 99999999998929999999
No 3
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=3.78 E-value=90 Score=13.41 Aligned_cols=10 Identities=30% Similarity=0.870 Sum_probs=4.5
Q ss_pred CCCHHHHHHH
Q ss_conf 8239999999
Q gi|254780736|r 14 GAAAIEYGML 23 (60)
Q Consensus 14 GaTAIEYgLI 23 (60)
+.-|+|||||
T Consensus 197 a~EAleyGli 206 (218)
T 1y7o_A 197 AQETLEYGFI 206 (218)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHCCCC
T ss_conf 9999985998
No 4
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=3.74 E-value=2e+02 Score=11.60 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999855899999999853145325
Q gi|254780736|r 31 IIAAVTMLGGSLKGTFEEAANRISNVKS 58 (60)
Q Consensus 31 ii~av~~lG~~l~~~f~~i~~~l~~a~~ 58 (60)
++-+|..++..-...|..|+..|.+-+.
T Consensus 29 L~~~v~~~~~~~~~~W~~IA~~vpgRt~ 56 (73)
T 2cqr_A 29 LELALQQYPRGSSDCWDKIARCVPSKSK 56 (73)
T ss_dssp HHHHHHHSCSSSHHHHHHHGGGCSSSCH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCCCH
T ss_conf 9999999689626478998647489999
No 5
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=3.61 E-value=2.4e+02 Score=11.23 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999985589999999985314
Q gi|254780736|r 32 IAAVTMLGGSLKGTFEEAANRIS 54 (60)
Q Consensus 32 i~av~~lG~~l~~~f~~i~~~l~ 54 (60)
-..|..+=.++.+.|+.+++++-
T Consensus 8 t~~Vq~LL~QmQ~kFq~mSd~Ii 30 (48)
T 3ci9_A 8 TSVVQTLLQQMQDKFQTISDQII 30 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998899999
No 6
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp}
Probab=3.57 E-value=1.3e+02 Score=12.59 Aligned_cols=10 Identities=30% Similarity=0.684 Sum_probs=4.2
Q ss_pred CCCHHHHHHH
Q ss_conf 8239999999
Q gi|254780736|r 14 GAAAIEYGML 23 (60)
Q Consensus 14 GaTAIEYgLI 23 (60)
+.-|+|||||
T Consensus 180 a~EAleyGli 189 (201)
T 3p2l_A 180 ADEAKAYGLI 189 (201)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHCCCC
T ss_conf 9999984998
No 7
>1tg6_A Putative ATP-dependent CLP protease proteolytic subunit; mitochondrial CLPP, CLP/HSP 100, X-RAY crystallography, ATP- dependent protease; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=3.53 E-value=1.3e+02 Score=12.55 Aligned_cols=11 Identities=45% Similarity=0.673 Sum_probs=5.7
Q ss_pred CCCCHHHHHHH
Q ss_conf 68239999999
Q gi|254780736|r 13 SGAAAIEYGML 23 (60)
Q Consensus 13 ~GaTAIEYgLI 23 (60)
+..-|+|||||
T Consensus 231 sa~EA~eyGli 241 (277)
T 1tg6_A 231 SPMEAQEFGIL 241 (277)
T ss_dssp CHHHHHHHTSC
T ss_pred CHHHHHHCCCC
T ss_conf 59999983998
No 8
>2zih_A Vacuolar protein sorting-associated protein 74; beta hairpin, VPS, golgi localization, VPS74, tetramer, golgi apparatus, phosphoprotein; 2.80A {Saccharomyces cerevisiae} PDB: 2zii_A
Probab=3.29 E-value=2.6e+02 Score=11.06 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=17.3
Q ss_pred HHHHHHHCCCCCC-----HHHHHHHHHHHH
Q ss_conf 9999950346823-----999999999999
Q gi|254780736|r 4 CMNKLLKDESGAA-----AIEYGMLVALIA 28 (60)
Q Consensus 4 ~~~~f~~De~GaT-----AIEYgLIaalIa 28 (60)
++.--++|++|.. .++|||-.+++.
T Consensus 75 vLLL~L~D~~G~~s~~~~~l~~aLaGAiL~ 104 (347)
T 2zih_A 75 VLLMGLRDREGYLSFWNDSISYALRGCIII 104 (347)
T ss_dssp HHHHTCCSSSGGGSCCCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 998633678897323543089999899999
No 9
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=3.19 E-value=1.3e+02 Score=12.53 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=4.0
Q ss_pred CCCCCCHHHHH
Q ss_conf 34682399999
Q gi|254780736|r 11 DESGAAAIEYG 21 (60)
Q Consensus 11 De~GaTAIEYg 21 (60)
|..|.|+.-|+
T Consensus 161 n~~G~TpLh~A 171 (327)
T 1sw6_A 161 DNMGESCLVKA 171 (327)
T ss_dssp CTTCCCHHHHH
T ss_pred CCCCCCHHHHH
T ss_conf 99989899999
No 10
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=2.98 E-value=2.2e+02 Score=11.41 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=0.0
Q ss_pred CHHHHHHHHHCCCCCCHHH
Q ss_conf 9799999950346823999
Q gi|254780736|r 1 MINCMNKLLKDESGAAAIE 19 (60)
Q Consensus 1 M~~~~~~f~~De~GaTAIE 19 (60)
|.+-+..|++.-.-+.|.|
T Consensus 9 mltdilsfmksgkraaale 27 (33)
T 3c0t_B 9 MLTDILSFMKSGKRAAALE 27 (33)
T ss_dssp HHHHHHHHHHHCCCCGGGC
T ss_pred HHHHHHHHHHCCCHHHHHH
T ss_conf 9999999998540788876
Done!