Query gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 60 No_of_seqs 109 out of 244 Neff 4.6 Searched_HMMs 13730 Date Wed Jun 1 07:32:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780736.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1j2ga1 d.96.1.4 (A:7-158) Ura 10.0 58 0.0042 13.2 2.6 29 1-29 70-98 (152) 2 d1kcza2 d.54.1.1 (A:1-160) bet 8.7 66 0.0048 12.9 2.3 23 11-33 123-145 (160) 3 d2cqra1 a.4.1.3 (A:7-66) DnaJ 6.2 62 0.0045 13.0 0.3 28 31-58 23-50 (60) 4 d1kkoa2 d.54.1.1 (A:1-160) bet 6.0 91 0.0067 12.2 2.2 23 10-32 122-144 (160) 5 d2cjja1 a.4.1.3 (A:8-70) Radia 4.8 65 0.0047 12.9 -0.3 28 31-58 12-39 (63) 6 d1jvra_ a.61.1.2 (A:) HTLV-II 4.1 59 0.0043 13.1 -0.9 26 2-27 48-73 (137) 7 d2ibaa1 d.96.1.4 (A:1-136) Ura 3.6 1.4E+02 0.01 11.2 3.2 29 1-29 60-88 (136) 8 d1d5ya1 a.4.1.8 (A:3-56) Rob t 3.4 1.4E+02 0.01 11.1 1.6 18 3-20 34-51 (54) 9 d2oara1 f.16.1.1 (A:10-118) Ga 3.1 1.6E+02 0.011 11.0 1.1 25 11-35 51-76 (109) 10 d1tg6a1 c.14.1.1 (A:1-193) Clp 3.0 92 0.0067 12.1 -0.8 7 17-23 179-185 (193) No 1 >d1j2ga1 d.96.1.4 (A:7-158) Urate oxidase (uricase) {Bacillus sp., strain TB-90 [TaxId: 1409]} Probab=10.02 E-value=58 Score=13.16 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=24.0 Q ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 97999999503468239999999999999 Q gi|254780736|r 1 MINCMNKLLKDESGAAAIEYGMLVALIAV 29 (60) Q Consensus 1 M~~~~~~f~~De~GaTAIEYgLIaalIav 29 (60) |||.+..|.+...+.+.=+||+.++-=++ T Consensus 70 ~KNTVy~~Ak~~~~~s~E~Fa~~L~~HFv 98 (152) T d1j2ga1 70 MKNFIQKHLASYTGTTIEGFLEYVATSFL 98 (152) T ss_dssp HHHHHHHHHHHCCSSSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 79999999987699998999999999971 No 2 >d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} Probab=8.69 E-value=66 Score=12.88 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=15.7 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 34682399999999999999999 Q gi|254780736|r 11 DESGAAAIEYGMLVALIAVAIIA 33 (60) Q Consensus 11 De~GaTAIEYgLIaalIav~ii~ 33 (60) .++=-|||+||+=-+|..-+--. T Consensus 123 g~~LHtAiRYGvSQALL~A~A~a 145 (160) T d1kcza2 123 GNRLHTAIRYGITQAILDAVAKT 145 (160) T ss_dssp TEECCHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHH T ss_conf 86014889972899999999998 No 3 >d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Probab=6.24 E-value=62 Score=13.02 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 9999999855899999999853145325 Q gi|254780736|r 31 IIAAVTMLGGSLKGTFEEAANRISNVKS 58 (60) Q Consensus 31 ii~av~~lG~~l~~~f~~i~~~l~~a~~ 58 (60) ++-+|..+|......|+.|+..|.+-++ T Consensus 23 L~~~v~~~~~~~~~~W~~IA~~l~~Rt~ 50 (60) T d2cqra1 23 LELALQQYPRGSSDCWDKIARCVPSKSK 50 (60) T ss_dssp HHHHHHHSCSSSHHHHHHHGGGCSSSCH T ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCCCH T ss_conf 9999998088664599999988499999 No 4 >d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} Probab=5.96 E-value=91 Score=12.15 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=15.6 Q ss_pred HCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 03468239999999999999999 Q gi|254780736|r 10 KDESGAAAIEYGMLVALIAVAII 32 (60) Q Consensus 10 ~De~GaTAIEYgLIaalIav~ii 32 (60) ..++=-|||+||+=-+|..-+-- T Consensus 122 ~g~~LHtAiRYGvSQALL~A~A~ 144 (160) T d1kkoa2 122 DGNLLHTAVRYGLSQALLDATAL 144 (160) T ss_dssp TTEECCHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHH T ss_conf 88701388997289999999999 No 5 >d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Probab=4.82 E-value=65 Score=12.90 Aligned_cols=28 Identities=7% Similarity=0.127 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 9999999855899999999853145325 Q gi|254780736|r 31 IIAAVTMLGGSLKGTFEEAANRISNVKS 58 (60) Q Consensus 31 ii~av~~lG~~l~~~f~~i~~~l~~a~~ 58 (60) ++-++..+|....+.|..|+..+.+-+. T Consensus 12 L~~~v~~~~~~~~~~W~~Ia~~l~gRt~ 39 (63) T d2cjja1 12 FERALAVYDKDTPDRWANVARAVEGRTP 39 (63) T ss_dssp HHHHHHHSCTTCTTHHHHHHHHSTTCCH T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCCCH T ss_conf 9999999777883499999989599999 No 6 >d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]} Probab=4.15 E-value=59 Score=13.13 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=15.8 Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 79999995034682399999999999 Q gi|254780736|r 2 INCMNKLLKDESGAAAIEYGMLVALI 27 (60) Q Consensus 2 ~~~~~~f~~De~GaTAIEYgLIaalI 27 (60) +++++.+++-.-=---|.|-|+++|| T Consensus 48 r~flklalkTpvwl~Pi~ySlla~li 73 (137) T d1jvra_ 48 RRFLKLALKTPIWLNPIDYSLLASLI 73 (137) T ss_dssp HHHHHHHHTCTTSTTTTCTTTHHHHS T ss_pred HHHHHHHHHCCCCCCCCCCCHHHCCC T ss_conf 99999998385312660100101237 No 7 >d2ibaa1 d.96.1.4 (A:1-136) Urate oxidase (uricase) {Aspergillus flavus [TaxId: 5059]} Probab=3.55 E-value=1.4e+02 Score=11.20 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=23.1 Q ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 97999999503468239999999999999 Q gi|254780736|r 1 MINCMNKLLKDESGAAAIEYGMLVALIAV 29 (60) Q Consensus 1 M~~~~~~f~~De~GaTAIEYgLIaalIav 29 (60) |||.+..|.|...+.+.=+||+.++-=++ T Consensus 60 ~KNTVy~~AK~~~~~s~E~Fa~~L~~HFv 88 (136) T d2ibaa1 60 IKNTIYITAKQNPVTPPELFGSILGTHFI 88 (136) T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 59999999987799998999999999982 No 8 >d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=3.45 E-value=1.4e+02 Score=11.14 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=14.3 Q ss_pred HHHHHHHHCCCCCCHHHH Q ss_conf 999999503468239999 Q gi|254780736|r 3 NCMNKLLKDESGAAAIEY 20 (60) Q Consensus 3 ~~~~~f~~De~GaTAIEY 20 (60) ..+.|.++.+-|-|-.|| T Consensus 34 ~~l~r~Fk~~~g~tp~~y 51 (54) T d1d5ya1 34 WHLQRMFKDVTGHAIGAY 51 (54) T ss_dssp HHHHHHHHHHHSSCHHHH T ss_pred HHHHHHHHHHHCCCHHHH T ss_conf 999999999999099999 No 9 >d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]} Probab=3.12 E-value=1.6e+02 Score=10.96 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=0.0 Q ss_pred CCCCCCHHHHH-HHHHHHHHHHHHHH Q ss_conf 34682399999-99999999999999 Q gi|254780736|r 11 DESGAAAIEYG-MLVALIAVAIIAAV 35 (60) Q Consensus 11 De~GaTAIEYg-LIaalIav~ii~av 35 (60) ...|+..+.|| .+-++|.-.|++.+ T Consensus 51 ~~~~~~~i~~G~fi~a~InFlIiA~v 76 (109) T d2oara1 51 GIGGGQTIDLNVLLSAAINFFLIAFA 76 (109) T ss_dssp TCCSCEEECHHHHHHHHHHHHHHHHH T ss_pred ECCCCCEEEHHHHHHHHHHHHHHHHH T ss_conf 03787234388999999999999999 No 10 >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Probab=3.03 E-value=92 Score=12.14 Aligned_cols=7 Identities=57% Similarity=1.061 Sum_probs=0.0 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254780736|r 17 AIEYGML 23 (60) Q Consensus 17 AIEYgLI 23 (60) |+|||++ T Consensus 179 Al~yGli 185 (193) T d1tg6a1 179 AQEFGIL 185 (193) T ss_dssp HHHHTSC T ss_pred HHHCCCC T ss_conf 9983999 Done!