Query         gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 60
No_of_seqs    109 out of 244
Neff          4.6 
Searched_HMMs 13730
Date          Wed Jun  1 07:32:19 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780736.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1j2ga1 d.96.1.4 (A:7-158) Ura  10.0      58  0.0042   13.2   2.6   29    1-29     70-98  (152)
  2 d1kcza2 d.54.1.1 (A:1-160) bet   8.7      66  0.0048   12.9   2.3   23   11-33    123-145 (160)
  3 d2cqra1 a.4.1.3 (A:7-66) DnaJ    6.2      62  0.0045   13.0   0.3   28   31-58     23-50  (60)
  4 d1kkoa2 d.54.1.1 (A:1-160) bet   6.0      91  0.0067   12.2   2.2   23   10-32    122-144 (160)
  5 d2cjja1 a.4.1.3 (A:8-70) Radia   4.8      65  0.0047   12.9  -0.3   28   31-58     12-39  (63)
  6 d1jvra_ a.61.1.2 (A:) HTLV-II    4.1      59  0.0043   13.1  -0.9   26    2-27     48-73  (137)
  7 d2ibaa1 d.96.1.4 (A:1-136) Ura   3.6 1.4E+02    0.01   11.2   3.2   29    1-29     60-88  (136)
  8 d1d5ya1 a.4.1.8 (A:3-56) Rob t   3.4 1.4E+02    0.01   11.1   1.6   18    3-20     34-51  (54)
  9 d2oara1 f.16.1.1 (A:10-118) Ga   3.1 1.6E+02   0.011   11.0   1.1   25   11-35     51-76  (109)
 10 d1tg6a1 c.14.1.1 (A:1-193) Clp   3.0      92  0.0067   12.1  -0.8    7   17-23    179-185 (193)

No 1  
>d1j2ga1 d.96.1.4 (A:7-158) Urate oxidase (uricase) {Bacillus sp., strain TB-90 [TaxId: 1409]}
Probab=10.02  E-value=58  Score=13.16  Aligned_cols=29  Identities=24%  Similarity=0.197  Sum_probs=24.0

Q ss_pred             CHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             97999999503468239999999999999
Q gi|254780736|r    1 MINCMNKLLKDESGAAAIEYGMLVALIAV   29 (60)
Q Consensus         1 M~~~~~~f~~De~GaTAIEYgLIaalIav   29 (60)
                      |||.+..|.+...+.+.=+||+.++-=++
T Consensus        70 ~KNTVy~~Ak~~~~~s~E~Fa~~L~~HFv   98 (152)
T d1j2ga1          70 MKNFIQKHLASYTGTTIEGFLEYVATSFL   98 (152)
T ss_dssp             HHHHHHHHHHHCCSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             79999999987699998999999999971


No 2  
>d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]}
Probab=8.69  E-value=66  Score=12.88  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=15.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             34682399999999999999999
Q gi|254780736|r   11 DESGAAAIEYGMLVALIAVAIIA   33 (60)
Q Consensus        11 De~GaTAIEYgLIaalIav~ii~   33 (60)
                      .++=-|||+||+=-+|..-+--.
T Consensus       123 g~~LHtAiRYGvSQALL~A~A~a  145 (160)
T d1kcza2         123 GNRLHTAIRYGITQAILDAVAKT  145 (160)
T ss_dssp             TEECCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             86014889972899999999998


No 3  
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.24  E-value=62  Score=13.02  Aligned_cols=28  Identities=7%  Similarity=0.093  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9999999855899999999853145325
Q gi|254780736|r   31 IIAAVTMLGGSLKGTFEEAANRISNVKS   58 (60)
Q Consensus        31 ii~av~~lG~~l~~~f~~i~~~l~~a~~   58 (60)
                      ++-+|..+|......|+.|+..|.+-++
T Consensus        23 L~~~v~~~~~~~~~~W~~IA~~l~~Rt~   50 (60)
T d2cqra1          23 LELALQQYPRGSSDCWDKIARCVPSKSK   50 (60)
T ss_dssp             HHHHHHHSCSSSHHHHHHHGGGCSSSCH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHCCCCCH
T ss_conf             9999998088664599999988499999


No 4  
>d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}
Probab=5.96  E-value=91  Score=12.15  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=15.6

Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             03468239999999999999999
Q gi|254780736|r   10 KDESGAAAIEYGMLVALIAVAII   32 (60)
Q Consensus        10 ~De~GaTAIEYgLIaalIav~ii   32 (60)
                      ..++=-|||+||+=-+|..-+--
T Consensus       122 ~g~~LHtAiRYGvSQALL~A~A~  144 (160)
T d1kkoa2         122 DGNLLHTAVRYGLSQALLDATAL  144 (160)
T ss_dssp             TTEECCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             88701388997289999999999


No 5  
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=4.82  E-value=65  Score=12.90  Aligned_cols=28  Identities=7%  Similarity=0.127  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9999999855899999999853145325
Q gi|254780736|r   31 IIAAVTMLGGSLKGTFEEAANRISNVKS   58 (60)
Q Consensus        31 ii~av~~lG~~l~~~f~~i~~~l~~a~~   58 (60)
                      ++-++..+|....+.|..|+..+.+-+.
T Consensus        12 L~~~v~~~~~~~~~~W~~Ia~~l~gRt~   39 (63)
T d2cjja1          12 FERALAVYDKDTPDRWANVARAVEGRTP   39 (63)
T ss_dssp             HHHHHHHSCTTCTTHHHHHHHHSTTCCH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHCCCCCH
T ss_conf             9999999777883499999989599999


No 6  
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=4.15  E-value=59  Score=13.13  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=15.8

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             79999995034682399999999999
Q gi|254780736|r    2 INCMNKLLKDESGAAAIEYGMLVALI   27 (60)
Q Consensus         2 ~~~~~~f~~De~GaTAIEYgLIaalI   27 (60)
                      +++++.+++-.-=---|.|-|+++||
T Consensus        48 r~flklalkTpvwl~Pi~ySlla~li   73 (137)
T d1jvra_          48 RRFLKLALKTPIWLNPIDYSLLASLI   73 (137)
T ss_dssp             HHHHHHHHTCTTSTTTTCTTTHHHHS
T ss_pred             HHHHHHHHHCCCCCCCCCCCHHHCCC
T ss_conf             99999998385312660100101237


No 7  
>d2ibaa1 d.96.1.4 (A:1-136) Urate oxidase (uricase) {Aspergillus flavus [TaxId: 5059]}
Probab=3.55  E-value=1.4e+02  Score=11.20  Aligned_cols=29  Identities=10%  Similarity=0.125  Sum_probs=23.1

Q ss_pred             CHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             97999999503468239999999999999
Q gi|254780736|r    1 MINCMNKLLKDESGAAAIEYGMLVALIAV   29 (60)
Q Consensus         1 M~~~~~~f~~De~GaTAIEYgLIaalIav   29 (60)
                      |||.+..|.|...+.+.=+||+.++-=++
T Consensus        60 ~KNTVy~~AK~~~~~s~E~Fa~~L~~HFv   88 (136)
T d2ibaa1          60 IKNTIYITAKQNPVTPPELFGSILGTHFI   88 (136)
T ss_dssp             HHHHHHHHHHHSCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             59999999987799998999999999982


No 8  
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.45  E-value=1.4e+02  Score=11.14  Aligned_cols=18  Identities=28%  Similarity=0.451  Sum_probs=14.3

Q ss_pred             HHHHHHHHCCCCCCHHHH
Q ss_conf             999999503468239999
Q gi|254780736|r    3 NCMNKLLKDESGAAAIEY   20 (60)
Q Consensus         3 ~~~~~f~~De~GaTAIEY   20 (60)
                      ..+.|.++.+-|-|-.||
T Consensus        34 ~~l~r~Fk~~~g~tp~~y   51 (54)
T d1d5ya1          34 WHLQRMFKDVTGHAIGAY   51 (54)
T ss_dssp             HHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHH
T ss_conf             999999999999099999


No 9  
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.12  E-value=1.6e+02  Score=10.96  Aligned_cols=25  Identities=28%  Similarity=0.373  Sum_probs=0.0

Q ss_pred             CCCCCCHHHHH-HHHHHHHHHHHHHH
Q ss_conf             34682399999-99999999999999
Q gi|254780736|r   11 DESGAAAIEYG-MLVALIAVAIIAAV   35 (60)
Q Consensus        11 De~GaTAIEYg-LIaalIav~ii~av   35 (60)
                      ...|+..+.|| .+-++|.-.|++.+
T Consensus        51 ~~~~~~~i~~G~fi~a~InFlIiA~v   76 (109)
T d2oara1          51 GIGGGQTIDLNVLLSAAINFFLIAFA   76 (109)
T ss_dssp             TCCSCEEECHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCEEEHHHHHHHHHHHHHHHHH
T ss_conf             03787234388999999999999999


No 10 
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=3.03  E-value=92  Score=12.14  Aligned_cols=7  Identities=57%  Similarity=1.061  Sum_probs=0.0

Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780736|r   17 AIEYGML   23 (60)
Q Consensus        17 AIEYgLI   23 (60)
                      |+|||++
T Consensus       179 Al~yGli  185 (193)
T d1tg6a1         179 AQEFGIL  185 (193)
T ss_dssp             HHHHTSC
T ss_pred             HHHCCCC
T ss_conf             9983999


Done!