RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780736|ref|YP_003065149.1| hypothetical protein
CLIBASIA_03115 [Candidatus Liberibacter asiaticus str. psy62]
         (60 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.9 bits (67), Expect = 0.15
 Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 21/59 (35%)

Query: 1   MINC---------MNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAA 50
           ++           +   L    GA     G++ A      IA       S + +F  + 
Sbjct: 250 VVTAKLLGFTPGELRSYL---KGATGHSQGLVTA----VAIAETD----SWE-SFFVSV 296


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.2 bits (64), Expect = 0.22
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 7/25 (28%)

Query: 5  MNKL---LK---DESGAA-AIEYGM 22
          + KL   LK   D+S  A AI+  M
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATM 46


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.130    0.336 

Gapped
Lambda     K      H
   0.267   0.0565    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 438,819
Number of extensions: 13921
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 3
Length of query: 60
Length of database: 5,693,230
Length adjustment: 31
Effective length of query: 29
Effective length of database: 4,941,666
Effective search space: 143308314
Effective search space used: 143308314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)