RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter asiaticus str. psy62] (60 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 29.9 bits (67), Expect = 0.15 Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 21/59 (35%) Query: 1 MINC---------MNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAA 50 ++ + L GA G++ A IA S + +F + Sbjct: 250 VVTAKLLGFTPGELRSYL---KGATGHSQGLVTA----VAIAETD----SWE-SFFVSV 296 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 29.2 bits (64), Expect = 0.22 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 7/25 (28%) Query: 5 MNKL---LK---DESGAA-AIEYGM 22 + KL LK D+S A AI+ M Sbjct: 22 LKKLQASLKLYADDSAPALAIKATM 46 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.130 0.336 Gapped Lambda K H 0.267 0.0565 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 438,819 Number of extensions: 13921 Number of successful extensions: 45 Number of sequences better than 10.0: 1 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 3 Length of query: 60 Length of database: 5,693,230 Length adjustment: 31 Effective length of query: 29 Effective length of database: 4,941,666 Effective search space: 143308314 Effective search space used: 143308314 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.4 bits)