BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780736|ref|YP_003065149.1| hypothetical protein
CLIBASIA_03115 [Candidatus Liberibacter asiaticus str. psy62]
         (60 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 60

 Score =  117 bits (292), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1  MINCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRISNVKSAK 60
          MINCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRISNVKSAK
Sbjct: 1  MINCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRISNVKSAK 60


>gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 56

 Score = 61.2 bits (147), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 36/47 (76%)

Query: 2  INCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEE 48
          +N +   LKDESGA AIEYG+L +LIAVAIIA+VT LGG L   FE+
Sbjct: 3  MNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFED 49


>gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 62

 Score = 59.3 bits (142), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 2  INCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFE 47
          ++ +   L+DESGA AIEYG+LV+LIAV II +VT LGG LK  FE
Sbjct: 3  MHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFE 48


>gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 58

 Score = 58.9 bits (141), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 1/57 (1%)

Query: 2  INCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRISNVKS 58
          ++ +   L+DESGA AIEYG+L +LIAVAIIA+VT LGG L   F + ++++ N KS
Sbjct: 3  MHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADISSKL-NPKS 58


>gi|254780730|ref|YP_003065143.1| hypothetical protein CLIBASIA_03085 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 120

 Score = 56.2 bits (134), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 37/46 (80%)

Query: 2  INCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFE 47
          +N + K+LK+ SGA AIEYG+L +L++VAII+AV+ LG  +KG ++
Sbjct: 3  MNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQ 48


>gi|254780735|ref|YP_003065148.1| hypothetical protein CLIBASIA_03110 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 75

 Score = 40.0 bits (92), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 33/38 (86%)

Query: 18 IEYGMLVALIAVAIIAAVTMLGGSLKGTFEEAANRISN 55
           EYGM+ ALIAVAIIAAVT LGGSLKG FEE AN++S+
Sbjct: 5  YEYGMMAALIAVAIIAAVTKLGGSLKGAFEEVANQMSH 42


>gi|254780473|ref|YP_003064886.1| cytochrome O ubiquinol oxidase subunit I [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 671

 Score = 20.0 bits (40), Expect = 7.3,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 12/14 (85%)

Query: 23 LVALIAVAIIAAVT 36
          +VAL+ V+II A+T
Sbjct: 33 VVALVGVSIIFAIT 46


>gi|254780311|ref|YP_003064724.1| hypothetical protein CLIBASIA_00980 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 177

 Score = 20.0 bits (40), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 7   KLLKDESGAAAIEYGMLV 24
           KLL D SG    + GMLV
Sbjct: 102 KLLPDGSGEFTRKMGMLV 119


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.130    0.336 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,783
Number of Sequences: 1233
Number of extensions: 647
Number of successful extensions: 13
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 60
length of database: 328,796
effective HSP length: 32
effective length of query: 28
effective length of database: 289,340
effective search space:  8101520
effective search space used:  8101520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.8 bits)
S2: 31 (16.5 bits)