Query gi|254780737|ref|YP_003065150.1| hypothetical protein CLIBASIA_03120 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 60
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 14:09:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780737.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1ohe_A CDC14B, CDC14B2 phosph 27.5 37 0.0011 16.5 2.1 37 20-56 60-97 (159)
2 >1sr9_A 2-isopropylmalate synt 12.3 62 0.0018 15.4 0.4 16 19-34 2-20 (61)
3 >1igq_A Transcriptional repres 9.4 92 0.0027 14.6 0.4 20 28-47 1-20 (62)
4 >1xsz_A Guanine nucleotide exc 8.4 94 0.0028 14.6 0.1 31 28-58 13-43 (47)
5 >2w9y_A CE-FAR-7, fatty acid/r 6.2 1.8E+02 0.0054 13.2 0.8 14 21-34 48-61 (63)
6 >2avn_A Ubiquinone/menaquinone 6.2 18 0.00053 18.0 -4.5 40 18-59 29-68 (73)
7 >1wdn_A GLNBP, glutamine bindi 5.7 70 0.0021 15.2 -1.7 20 18-37 77-96 (123)
8 >3f0i_A Arsenate reductase; st 5.5 2.6E+02 0.0078 12.4 1.5 27 20-46 77-106 (119)
9 >1i5p_A Pesticidial crystal pr 5.4 1.6E+02 0.0048 13.4 0.1 17 25-41 39-55 (104)
10 >1yks_A Genome polyprotein [co 5.4 2.7E+02 0.008 12.4 1.5 24 37-60 27-50 (53)
No 1
>>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} (A:1-159)
Probab=27.53 E-value=37 Score=16.47 Aligned_cols=37 Identities=30% Similarity=0.282 Sum_probs=27.9
Q ss_pred HHHCHHHH-HHCCCCCHHCCEEEEHHHHHHHHHHHHHH
Q ss_conf 31147665-31286500065500005555566688776
Q gi|254780737|r 20 YAFSQDEI-KKNNPTLEKKPIVLMKHEIQEKKTLAAFT 56 (60)
Q Consensus 20 yafsqdei-kknnptlekkpivlmkheiqekktlaaft 56 (60)
|.|.+.-- +-++|.+++|+||.--+.-++|++-|||-
T Consensus 60 yrfc~~v~~~L~~~~~~~k~IVhyTs~d~rkRaNAa~L 97 (159)
T 1ohe_A 60 YRYCCKINKKLKSITMLRKKIVHFTGSDQRKQANAAFL 97 (159)
T ss_dssp HHHHHHHHHHHHCGGGTTSEEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHCCCEEEEEECCCHHHHHHHHHH
T ss_conf 99999999997083214975999808983877889999
No 2
>>1sr9_A 2-isopropylmalate synthase; TIM barrel, transferase; 2.00A {Mycobacterium tuberculosis} (A:371-431)
Probab=12.34 E-value=62 Score=15.42 Aligned_cols=16 Identities=50% Similarity=0.629 Sum_probs=10.1
Q ss_pred HHHHC---HHHHHHCCCCC
Q ss_conf 43114---76653128650
Q gi|254780737|r 19 YYAFS---QDEIKKNNPTL 34 (60)
Q Consensus 19 yyafs---qdeikknnptl 34 (60)
|-||| ||-|+|.-..+
T Consensus 2 ftAFSGSHQDAI~KG~~~~ 20 (61)
T 1sr9_A 2 YTAFSGSHQDAINKGLDAX 20 (61)
T ss_dssp TEECCHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHCCHHHH
T ss_conf 1332302067785183543
No 3
>>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} (A:)
Probab=9.41 E-value=92 Score=14.61 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=15.2
Q ss_pred HHCCCCCHHCCEEEEHHHHH
Q ss_conf 31286500065500005555
Q gi|254780737|r 28 KKNNPTLEKKPIVLMKHEIQ 47 (60)
Q Consensus 28 kknnptlekkpivlmkheiq 47 (60)
|...|+--|||||...|.-+
T Consensus 1 ke~Dpdklkk~iv~V~hdgr 20 (62)
T 1igq_A 1 KEPDPDKLKKAIVQVEHDER 20 (62)
T ss_dssp --------CCCEEEEEETTE
T ss_pred CCCCHHHHHHHHHEECCCCC
T ss_conf 98887888765502003655
No 4
>>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} (A:39-85)
Probab=8.40 E-value=94 Score=14.56 Aligned_cols=31 Identities=32% Similarity=0.331 Sum_probs=24.4
Q ss_pred HHCCCCCHHCCEEEEHHHHHHHHHHHHHHHH
Q ss_conf 3128650006550000555556668877651
Q gi|254780737|r 28 KKNNPTLEKKPIVLMKHEIQEKKTLAAFTSF 58 (60)
Q Consensus 28 kknnptlekkpivlmkheiqekktlaaftsf 58 (60)
.|+|-.||-----|-..+...||.|.+||+-
T Consensus 13 ek~nLdLeaVgDYL~~~~~dnkkVL~~Ft~q 43 (47)
T 1xsz_A 13 QRKNLDLEAVGDYLSSPEAENQQVLKAFTSQ 43 (47)
T ss_dssp TTTTSCHHHHHHHHTCCSHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 6889999999999579976799999999985
No 5
>>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans} (A:78-140)
Probab=6.23 E-value=1.8e+02 Score=13.18 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=9.3
Q ss_pred HHCHHHHHHCCCCC
Q ss_conf 11476653128650
Q gi|254780737|r 21 AFSQDEIKKNNPTL 34 (60)
Q Consensus 21 afsqdeikknnptl 34 (60)
+-.|...+||||..
T Consensus 48 ~edqaal~knnpdi 61 (63)
T 2w9y_A 48 SEDQAALRKNNPDI 61 (63)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999999878777
No 6
>>2avn_A Ubiquinone/menaquinone biosynthesis methyltransferase-related protein; TM1389, structural genomics; HET: SAI; 2.35A {Thermotoga maritima MSB8} (A:1-29,A:155-198)
Probab=6.17 E-value=18 Score=18.01 Aligned_cols=40 Identities=28% Similarity=0.467 Sum_probs=25.4
Q ss_pred HHHHHCHHHHHHCCCCCHHCCEEEEHHHHHHHHHHHHHHHHC
Q ss_conf 543114766531286500065500005555566688776512
Q gi|254780737|r 18 SYYAFSQDEIKKNNPTLEKKPIVLMKHEIQEKKTLAAFTSFA 59 (60)
Q Consensus 18 syyafsqdeikknnptlekkpivlmkheiqekktlaaftsfa 59 (60)
.+|.|-|.-|.+| +.|+-|-.|-...|.-..||-.|.|+|
T Consensus 29 dfytflq~mie~~--~w~~i~rflktqt~~vg~tlfsfnsya 68 (73)
T 2avn_A 29 DFYTFLQQXIEKD--AWDQITRFLKTQTTSVGTTLFSFNSYA 68 (73)
T ss_dssp GHHHHHHHHHHTT--CHHHHHHHHHHCEEEEECSSEEEEEEC
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHCCCCCCCCCCCCHHHHC
T ss_conf 9078899988603--389999875201345543356613410
No 7
>>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} (A:1-83,A:187-226)
Probab=5.68 E-value=70 Score=15.19 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=16.1
Q ss_pred HHHHHCHHHHHHCCCCCHHC
Q ss_conf 54311476653128650006
Q gi|254780737|r 18 SYYAFSQDEIKKNNPTLEKK 37 (60)
Q Consensus 18 syyafsqdeikknnptlekk 37 (60)
..+.||+=-++|+||.|-.+
T Consensus 77 ~~vdFS~~~~~k~~~~l~~~ 96 (123)
T 1wdn_A 77 KAIDFSDIAFPKGSDELRDK 96 (123)
T ss_dssp TTSEECSEEECTTCHHHHHH
T ss_pred CEEEECCEEEECCCHHHHHH
T ss_conf 45872459996999999999
No 8
>>3f0i_A Arsenate reductase; structural genomics, IDP01300, center for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae} (A:)
Probab=5.51 E-value=2.6e+02 Score=12.43 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=19.5
Q ss_pred HHHCHHHHHH---CCCCCHHCCEEEEHHHH
Q ss_conf 3114766531---28650006550000555
Q gi|254780737|r 20 YAFSQDEIKK---NNPTLEKKPIVLMKHEI 46 (60)
Q Consensus 20 yafsqdeikk---nnptlekkpivlmkhei 46 (60)
...|.+|+.. .||.|-|.|||.....+
T Consensus 77 ~~~s~~e~~~ll~~~p~LikRPIi~~~~~~ 106 (119)
T 3f0i_A 77 SQLSDDALFAAXAEHPKLIERPIVVCNGQA 106 (119)
T ss_dssp TTCCHHHHHHHHHHCGGGBCSCEEEETTEE
T ss_pred CCCCHHHHHHHHHHCHHHHCCCEEEECCEE
T ss_conf 449999999999868687358769979999
No 9
>>1i5p_A Pesticidial crystal protein CRY2AA; helical bundle, beta prism, lectin-like beta sandwich, jelly roll, toxin; 2.20A {Bacillus thuringiensis serovarkurstaki} (A:1-104)
Probab=5.43 E-value=1.6e+02 Score=13.43 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.1
Q ss_pred HHHHHCCCCCHHCCEEE
Q ss_conf 66531286500065500
Q gi|254780737|r 25 DEIKKNNPTLEKKPIVL 41 (60)
Q Consensus 25 deikknnptlekkpivl 41 (60)
.|-|+|+|.|--.|||-
T Consensus 39 teWK~~~~SL~~~pIVG 55 (104)
T 1i5p_A 39 MEWKRTDHSLYVAPVVG 55 (104)
T ss_dssp HHHHHHSCCCSCCTHHH
T ss_pred HHHHCCCCCEEEECCHH
T ss_conf 87522476268602011
No 10
>>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} (A:388-440)
Probab=5.41 E-value=2.7e+02 Score=12.40 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=18.6
Q ss_pred CCEEEEHHHHHHHHHHHHHHHHCC
Q ss_conf 655000055555666887765129
Q gi|254780737|r 37 KPIVLMKHEIQEKKTLAAFTSFAS 60 (60)
Q Consensus 37 kpivlmkheiqekktlaaftsfas 60 (60)
+|.-+--.-..+...|..|-.||+
T Consensus 27 ~PrW~DaR~~~d~~~L~~F~~fA~ 50 (53)
T 1yks_A 27 RPRWCDERVSSDQSALSEFIKFAE 50 (53)
T ss_dssp CCSSEEGGGSSSHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 103424211365226888999871
Done!