Query gi|254780737|ref|YP_003065150.1| hypothetical protein CLIBASIA_03120 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 60
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 07:54:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780737.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ohea1 c.45.1.1 (A:42-198) Pr 9.4 67 0.0049 13.4 2.6 30 27-56 65-94 (157)
2 d1t1ra3 c.2.1.3 (A:275-300) 1- 7.4 58 0.0043 13.7 0.7 10 3-12 2-11 (26)
3 d1igqa_ b.34.1.3 (A:) Transcri 7.0 56 0.0041 13.8 0.4 10 36-45 1-10 (54)
4 d2i9fa1 d.254.1.1 (A:50-105) A 6.3 56 0.004 13.8 0.1 10 10-19 22-31 (56)
5 d1bboa1 g.37.1.1 (A:1-28) Enha 4.8 46 0.0034 14.2 -1.1 11 35-45 11-21 (28)
6 d1wffa_ g.80.1.1 (A:) ANUBL1 ( 4.3 49 0.0035 14.1 -1.3 17 19-35 65-81 (85)
7 d3c7ba3 d.134.1.1 (A:167-238,A 3.7 42 0.0031 14.4 -2.0 21 17-37 160-182 (185)
8 d1u7ka_ a.73.1.1 (A:) AKV caps 3.2 1.7E+02 0.012 11.5 0.7 25 18-42 11-38 (131)
9 d2bmfa1 c.37.1.14 (A:483-618) 2.8 1.9E+02 0.014 11.3 0.8 25 36-60 109-133 (136)
10 d1ug0a_ a.217.1.1 (A:) Splicin 2.1 2.4E+02 0.018 10.8 1.1 16 17-32 70-85 (88)
No 1
>d1ohea1 c.45.1.1 (A:42-198) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.38 E-value=67 Score=13.41 Aligned_cols=30 Identities=33% Similarity=0.268 Sum_probs=24.8
Q ss_pred HHHCCCCCHHCCEEEEHHHHHHHHHHHHHH
Q ss_conf 531286500065500005555566688776
Q gi|254780737|r 27 IKKNNPTLEKKPIVLMKHEIQEKKTLAAFT 56 (60)
Q Consensus 27 ikknnptlekkpivlmkheiqekktlaaft 56 (60)
-|-++|.+.+|+||.--..-++|++-|||-
T Consensus 65 ~~L~~~~~~~k~Iv~yts~d~~kraNAa~L 94 (157)
T d1ohea1 65 KKLKSITMLRKKIVHFTGSDQRKQANAAFL 94 (157)
T ss_dssp HHHHCGGGTTSEEEEEECSCHHHHHHHHHH
T ss_pred HHHCCHHHCCCEEEEECCCCHHHHHHHHHH
T ss_conf 997394542976999879987888899999
No 2
>d1t1ra3 c.2.1.3 (A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}
Probab=7.36 E-value=58 Score=13.69 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=7.8
Q ss_pred HHHHHHHHHH
Q ss_conf 0445478999
Q gi|254780737|r 3 RTQIALALSF 12 (60)
Q Consensus 3 rtqialalsf 12 (60)
||-||.+|++
T Consensus 2 RtPIA~aLa~ 11 (26)
T d1t1ra3 2 RTPIAHTMAW 11 (26)
T ss_dssp HHHHHHHHHT
T ss_pred CCHHHHHCCC
T ss_conf 7512645038
No 3
>d1igqa_ b.34.1.3 (A:) Transcriptional repressor protein KorB {Escherichia coli [TaxId: 562]}
Probab=6.97 E-value=56 Score=13.79 Aligned_cols=10 Identities=50% Similarity=0.800 Sum_probs=7.0
Q ss_pred HCCEEEEHHH
Q ss_conf 0655000055
Q gi|254780737|r 36 KKPIVLMKHE 45 (60)
Q Consensus 36 kkpivlmkhe 45 (60)
||||+...|.
T Consensus 1 KK~iv~V~hd 10 (54)
T d1igqa_ 1 KKAIVQVEHD 10 (54)
T ss_dssp CCCEEEEEET
T ss_pred CCCEEEEEEC
T ss_conf 9857999988
No 4
>d2i9fa1 d.254.1.1 (A:50-105) Arterivirus nucleocapsid protein {Equine arteritis virus [TaxId: 11047]}
Probab=6.31 E-value=56 Score=13.80 Aligned_cols=10 Identities=50% Similarity=0.796 Sum_probs=7.5
Q ss_pred HHHHHHHHHH
Q ss_conf 9999886554
Q gi|254780737|r 10 LSFFMITHSY 19 (60)
Q Consensus 10 lsffmithsy 19 (60)
-.||||.|.-
T Consensus 22 qrffmighgs 31 (56)
T d2i9fa1 22 QRFFMIGHGS 31 (56)
T ss_dssp HHHHHTTCSE
T ss_pred HHEEEECCCC
T ss_conf 1014762552
No 5
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.78 E-value=46 Score=14.18 Aligned_cols=11 Identities=55% Similarity=0.694 Sum_probs=7.8
Q ss_pred HHCCEEEEHHH
Q ss_conf 00655000055
Q gi|254780737|r 35 EKKPIVLMKHE 45 (60)
Q Consensus 35 ekkpivlmkhe 45 (60)
-+||-||-||-
T Consensus 11 C~KPSvL~KHI 21 (28)
T d1bboa1 11 AKKPSMLKKHI 21 (28)
T ss_dssp CSSHHHHHHHH
T ss_pred CCCHHHHHHHH
T ss_conf 37879999999
No 6
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.26 E-value=49 Score=14.07 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=12.0
Q ss_pred HHHHCHHHHHHCCCCCH
Q ss_conf 43114766531286500
Q gi|254780737|r 19 YYAFSQDEIKKNNPTLE 35 (60)
Q Consensus 19 yyafsqdeikknnptle 35 (60)
|-....+++.+|||.+.
T Consensus 65 yK~~~k~~L~k~NP~i~ 81 (85)
T d1wffa_ 65 YKSAGRRYLEEANPVSG 81 (85)
T ss_dssp CSSSCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 58988999999898647
No 7
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.66 E-value=42 Score=14.37 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=9.0
Q ss_pred HHHHHHCHHHHH--HCCCCCHHC
Q ss_conf 554311476653--128650006
Q gi|254780737|r 17 HSYYAFSQDEIK--KNNPTLEKK 37 (60)
Q Consensus 17 hsyyafsqdeik--knnptlekk 37 (60)
+.|+.|-+||.+ +..+-+.++
T Consensus 160 ~py~~~~~~e~~~~~~~~d~~~~ 182 (185)
T d3c7ba3 160 NPFMFFEKDELKPSAYTEELKKR 182 (185)
T ss_dssp SCCCCCCGGGSCCCHHHHHHHHH
T ss_pred CCCEEECHHHCCCCCCCHHHHHC
T ss_conf 88542134224466656767625
No 8
>d1u7ka_ a.73.1.1 (A:) AKV capsid {AKV murine leukemia virus [TaxId: 11791]}
Probab=3.22 E-value=1.7e+02 Score=11.51 Aligned_cols=25 Identities=36% Similarity=0.677 Sum_probs=17.5
Q ss_pred HHHHHCHH---HHHHCCCCCHHCCEEEE
Q ss_conf 54311476---65312865000655000
Q gi|254780737|r 18 SYYAFSQD---EIKKNNPTLEKKPIVLM 42 (60)
Q Consensus 18 syyafsqd---eikknnptlekkpivlm 42 (60)
-|..||.- .+|+++|.+...|.-+.
T Consensus 11 ~y~PFs~sDL~nwK~~~p~fse~P~~~i 38 (131)
T d1u7ka_ 11 QYWPFSSSDLYNWKNNNPSFSEDPGKLT 38 (131)
T ss_dssp EECCCCHHHHHHHHHTSCCTTTCHHHHH
T ss_pred EEECCCHHHHHHHHHHCCCHHHCHHHHH
T ss_conf 2643639999999973775103979999
No 9
>d2bmfa1 c.37.1.14 (A:483-618) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=2.82 E-value=1.9e+02 Score=11.27 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=19.1
Q ss_pred HCCEEEEHHHHHHHHHHHHHHHHCC
Q ss_conf 0655000055555666887765129
Q gi|254780737|r 36 KKPIVLMKHEIQEKKTLAAFTSFAS 60 (60)
Q Consensus 36 kkpivlmkheiqekktlaaftsfas 60 (60)
-+|..+--.-..+...|.+|-.||+
T Consensus 109 LrP~W~DaR~~~d~~~l~~F~~fA~ 133 (136)
T d2bmfa1 109 LKPRWLDARIYSDPLALKEFKEFAA 133 (136)
T ss_dssp CCCSSCBGGGTSSHHHHHHHHHHHH
T ss_pred ECCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 1565752313056688999999863
No 10
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.08 E-value=2.4e+02 Score=10.75 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=0.0
Q ss_pred HHHHHHCHHHHHHCCC
Q ss_conf 5543114766531286
Q gi|254780737|r 17 HSYYAFSQDEIKKNNP 32 (60)
Q Consensus 17 hsyyafsqdeikknnp 32 (60)
|.||...-.|+++.+|
T Consensus 70 ~~YY~~kl~e~~~~~~ 85 (88)
T d1ug0a_ 70 FLYYRRKVAEIRKSGP 85 (88)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHCC
T ss_conf 2899999999997455
Done!