RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780737|ref|YP_003065150.1| hypothetical protein
CLIBASIA_03120 [Candidatus Liberibacter asiaticus str. psy62]
         (60 letters)



>2ory_A Lipase; alpha/beta hydrolase; 2.20A {Photobacterium SP}
          Length = 346

 Score = 27.0 bits (59), Expect = 1.1
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 5  QIALALSFFMITHSYYAFSQDEIKKNNPTLEKKPIV 40
          Q+ LA S+     SYY  +     K N  L  K + 
Sbjct: 7  QLMLAFSY----MSYYGITHTGSAKKNAELILKKMK 38


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.3 bits (55), Expect = 3.5
 Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 21/60 (35%)

Query: 7   ALALSFFMITHSYYAF---------SQDEIKKNN--PT-------LEKKPIVLMKHEIQE 48
           A+ + FF+    Y A+          +D ++ N   P+       L ++   +  + + +
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE--QVQDY-VNK 355


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 454,916
Number of extensions: 14693
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 4
Length of query: 60
Length of database: 5,693,230
Length adjustment: 31
Effective length of query: 29
Effective length of database: 4,941,666
Effective search space: 143308314
Effective search space used: 143308314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)