HHsearch alignment of GI: 254780739 and MMDB domain: 1pft_A_

>1pft_A (A:) TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus}

Probab=93.90  E-value=0.041  Score=32.33  Aligned_cols=28  Identities=25%  Similarity=0.393  Sum_probs=25.0

Q ss_pred             HHCCCCCCC-EEEEECCCCEEECHHCCCC
Q ss_conf             511678987-3689567885775210812
Q gi|254780739|r   15 ILVCPLTKG-NLTLISEGTELLSKKASLA   42 (64)
Q Consensus        15 iL~CP~~k~-~L~~~~~~~~Lvc~~~~~~   42 (64)
                      -..||.|++ .+.+|.+.+++||..|++.
T Consensus         5 ~~~Cp~Cg~~~iv~D~~~Ge~vC~~CG~V   33 (50)
T 1pft_A            5 QKVCPACESAELIYDPERGEIVCAKCGYV   33 (50)
T ss_dssp             CCSCTTTSCCCEEEETTTTEEEESSSCCB
T ss_pred             CCCCCCCCCCCEEEECCCCEEECCCCCCE
T ss_conf             55592987982788788791851269859