Query gi|254780739|ref|YP_003065152.1| hypothetical protein CLIBASIA_03130 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 64
No_of_seqs 110 out of 655
Neff 4.7
Searched_HMMs 33803
Date Wed Jun 1 14:33:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780739.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2jny_A Uncharacterized BCR; s 99.9 5.9E-24 1.7E-28 148.0 2.8 58 6-63 1-58 (67)
2 >2pk7_A Uncharacterized protei 99.9 2.5E-23 7.5E-28 144.6 2.3 56 8-63 1-56 (69)
3 >2js4_A UPF0434 protein BB2007 99.9 5.3E-23 1.6E-27 142.9 2.8 57 8-64 1-57 (70)
4 >2hf1_A Tetraacyldisaccharide- 99.9 3E-23 8.9E-28 144.2 1.3 56 8-63 1-56 (68)
5 >2kpi_A Uncharacterized protei 99.9 3.5E-23 1E-27 143.9 1.2 56 6-61 1-56 (56)
6 >2jr6_A UPF0434 protein NMA087 99.9 4.7E-23 1.4E-27 143.2 1.4 56 8-63 1-56 (68)
7 >2k5r_A Uncharacterized protei 99.8 6.6E-22 1.9E-26 137.1 2.2 56 8-63 1-83 (97)
8 >2j6a_A Protein TRM112; transl 98.1 5.8E-07 1.7E-11 58.0 -0.2 29 28-56 104-132 (141)
9 >1p91_A Ribosomal RNA large su 95.8 0.0067 2E-07 36.5 3.0 44 15-60 2-45 (269)
10 >3k1f_M Transcription initiati 95.1 0.012 3.5E-07 35.2 2.3 35 8-42 14-51 (57)
11 >1pft_A TFIIB, PFTFIIBN; N-ter 93.9 0.041 1.2E-06 32.3 2.8 28 15-42 5-33 (50)
12 >1dl6_A Transcription factor I 93.7 0.032 9.5E-07 32.9 2.0 33 11-43 7-40 (58)
13 >2akl_A PHNA-like protein PA01 89.4 0.22 6.4E-06 28.5 2.2 33 14-47 26-58 (62)
14 >2jne_A Hypothetical protein Y 77.4 1.9 5.6E-05 23.5 2.8 29 16-46 33-61 (101)
15 >2f9i_B Acetyl-coenzyme A carb 73.4 0.55 1.6E-05 26.4 -0.9 30 16-45 31-61 (61)
16 >2jrp_A Putative cytoplasmic p 70.3 2.7 8E-05 22.7 2.1 27 16-44 3-29 (30)
17 >2owo_A DNA ligase; protein/DN 60.4 5.3 0.00016 21.2 2.0 23 16-38 89-111 (160)
18 >2ba1_A Archaeal exosome RNA b 59.8 4.3 0.00013 21.6 1.5 20 21-42 1-20 (34)
19 >2ct7_A Ring finger protein 31 58.2 5.8 0.00017 20.9 1.9 31 14-44 24-54 (86)
20 >3cng_A Nudix hydrolase; struc 55.5 7.5 0.00022 20.4 2.2 25 17-41 5-33 (37)
21 >1dgs_A DNA ligase; AMP comple 54.3 8.1 0.00024 20.2 2.2 21 16-38 89-109 (111)
22 >2riq_A Poly [ADP-ribose] poly 48.7 7.5 0.00022 20.4 1.3 17 15-31 3-19 (85)
23 >2k4x_A 30S ribosomal protein 45.8 10 0.00031 19.6 1.6 31 17-47 20-50 (55)
24 >1k81_A EIF-2-beta, probable t 41.3 12 0.00035 19.3 1.3 30 17-46 2-34 (36)
25 >3dqy_A Toluene 1,2-dioxygenas 40.8 9.8 0.00029 19.7 0.9 37 17-53 30-67 (71)
26 >3cw2_K Translation initiation 39.7 3.6 0.00011 22.0 -1.5 39 8-46 96-137 (139)
27 >3ir9_A Peptide chain release 37.9 14 0.00042 18.9 1.3 20 11-30 28-47 (50)
28 >1tdz_A Formamidopyrimidine-DN 36.4 25 0.00074 17.6 2.4 26 16-41 108-135 (136)
29 >2qpz_A Naphthalene 1,2-dioxyg 33.7 17 0.0005 18.5 1.1 38 17-54 30-68 (71)
30 >2ckl_A Polycomb group ring fi 33.4 18 0.00054 18.3 1.3 55 1-55 1-72 (84)
31 >1fqt_A Rieske-type ferredoxin 32.7 15 0.00043 18.8 0.7 35 17-51 30-66 (72)
32 >3flo_B DNA polymerase alpha c 32.4 35 0.001 16.8 2.6 30 16-45 23-61 (206)
33 >2de6_A Terminal oxygenase com 32.4 26 0.00077 17.5 1.9 39 17-55 68-109 (147)
34 >1k3x_A Endonuclease VIII; hyd 31.4 33 0.00096 17.0 2.3 25 17-41 112-138 (138)
35 >2kdx_A HYPA, hydrogenase/urea 31.0 35 0.001 16.8 2.4 41 7-47 40-87 (119)
36 >3gpu_A DNA glycosylase; DNA g 30.7 28 0.00082 17.4 1.8 25 17-41 98-124 (124)
37 >1u5k_A Hypothetical protein; 30.6 36 0.0011 16.8 2.4 35 14-48 67-103 (162)
38 >3ga8_A HTH-type transcription 30.1 26 0.00078 17.5 1.6 28 16-43 3-46 (78)
39 >1twf_B DNA-directed RNA polym 29.9 29 0.00085 17.3 1.8 29 14-42 5-34 (70)
40 >2waq_B DNA-directed RNA polym 29.6 13 0.00038 19.1 -0.0 28 14-41 5-32 (76)
41 >3a43_A HYPD, hydrogenase nick 29.4 41 0.0012 16.4 2.5 29 19-47 56-84 (139)
42 >1wii_A Hypothetical UPF0222 p 29.1 46 0.0014 16.2 2.8 35 11-45 19-59 (85)
43 >1odh_A MGCM1; transcription f 25.6 42 0.0013 16.4 2.0 23 17-46 112-134 (174)
44 >3h0g_B DNA-directed RNA polym 25.1 16 0.00048 18.6 -0.2 30 14-43 6-35 (68)
45 >2k5c_A Uncharacterized protei 23.7 21 0.00062 18.0 0.2 14 16-29 9-22 (95)
46 >1vd4_A Transcription initiati 23.0 49 0.0015 16.0 2.0 26 16-41 15-47 (62)
47 >2jrp_A Putative cytoplasmic p 22.9 32 0.00094 17.0 1.0 26 17-43 3-38 (51)
48 >1wgm_A Ubiquitin conjugation 22.0 27 0.00081 17.4 0.5 50 7-56 14-80 (98)
49 >1lv3_A Hypothetical protein Y 22.0 35 0.001 16.8 1.0 26 15-40 9-36 (68)
50 >3gn5_A HTH-type transcription 21.9 48 0.0014 16.1 1.8 28 16-43 3-46 (71)
No 1
>>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} (A:)
Probab=99.88 E-value=5.9e-24 Score=147.99 Aligned_cols=58 Identities=38% Similarity=0.758 Sum_probs=56.5
Q ss_pred HHCCHHHHHHHCCCCCCCEEEEECCCCEEECHHCCCCCCCCCCEEECCHHHHEECCCC
Q ss_conf 0028688965116789873689567885775210812401176340587771304458
Q gi|254780739|r 6 FNIDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63 (64)
Q Consensus 6 ~~~~~~LL~iL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~deAr~l~~~ 63 (64)
|+||++||+||+||.||++|+|+.+.++|+|+.|+++|||+|||||||+||||.++++
T Consensus 1 M~~d~~LL~iL~CP~ck~~L~~~~~~~~Lvc~~~~~~yPI~dGIPvlL~dear~~~~~ 58 (67)
T 2jny_A 1 MSLDPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDEATEWTPN 58 (67)
T ss_dssp CCSCGGGTCCCBCTTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCSSCCEECCCC
T ss_pred CCCCHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCHH
T ss_conf 9979799988268798984659488997988865844635389010089994519999
No 2
>>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4KFT4, structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens pf-5} (A:)
Probab=99.87 E-value=2.5e-23 Score=144.63 Aligned_cols=56 Identities=54% Similarity=0.918 Sum_probs=53.5
Q ss_pred CCHHHHHHHCCCCCCCEEEEECCCCEEECHHCCCCCCCCCCEEECCHHHHEECCCC
Q ss_conf 28688965116789873689567885775210812401176340587771304458
Q gi|254780739|r 8 IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63 (64)
Q Consensus 8 ~~~~LL~iL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~deAr~l~~~ 63 (64)
.|++||+|||||+|||+|+|+.+.++|+|+.|+++|||+|||||||++|||+++++
T Consensus 1 ~D~~LLeiLaCP~ckg~L~~~~~~~~Lvc~~~~laYPI~dgIPvlL~deAr~l~~~ 56 (69)
T 2pk7_A 1 XDTKLLDILACPICKGPLKLSADKTELISKGAGLAYPIRDGIPVXLESEARTLTTE 56 (69)
T ss_dssp --CCGGGTCCCTTTCCCCEECTTSSEEEETTTTEEEEEETTEECCCGGGCEECCHH
T ss_pred CCHHHHHHEECCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCHH
T ss_conf 98688867068799987469688997974876825515188322089996107777
No 3
>>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50} (A:)
Probab=99.86 E-value=5.3e-23 Score=142.93 Aligned_cols=57 Identities=46% Similarity=0.867 Sum_probs=54.8
Q ss_pred CCHHHHHHHCCCCCCCEEEEECCCCEEECHHCCCCCCCCCCEEECCHHHHEECCCCC
Q ss_conf 286889651167898736895678857752108124011763405877713044589
Q gi|254780739|r 8 IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQG 64 (64)
Q Consensus 8 ~~~~LL~iL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~deAr~l~~~~ 64 (64)
||++||+||+||.||++|.|+.++++|+|+.|+++|||+|||||||+++||+++++.
T Consensus 1 md~~LL~iL~CP~ck~~L~~~~~~~~Lvc~~c~~~YPI~dGIPvLL~~ear~l~~~e 57 (70)
T 2js4_A 1 MESRLLDILVCPVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAEARSLDAEA 57 (70)
T ss_dssp CCCCCCCCCBCTTTCCBEEEETTTTEEEETTTTEEEEEETTEECCCGGGSEESSSCC
T ss_pred CCHHHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 986889881687999985595889989647538656250890230899942066467
No 4
>>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthesis, NESG, structural genomics, PSI-2; 1.90A {Chromobacterium violaceum atcc 12472} (A:)
Probab=99.86 E-value=3e-23 Score=144.23 Aligned_cols=56 Identities=46% Similarity=0.805 Sum_probs=53.6
Q ss_pred CCHHHHHHHCCCCCCCEEEEECCCCEEECHHCCCCCCCCCCEEECCHHHHEECCCC
Q ss_conf 28688965116789873689567885775210812401176340587771304458
Q gi|254780739|r 8 IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63 (64)
Q Consensus 8 ~~~~LL~iL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~deAr~l~~~ 63 (64)
.|++||+|||||+|||+|.|+++.++|||+.|+++|||+|||||||++|||+++++
T Consensus 1 ~D~~LLeiLaCP~ckg~L~~~~~~~~Lvc~~~~laYPI~dGIPvlL~~eAr~l~~~ 56 (68)
T 2hf1_A 1 XDAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPXXLESEARELAPE 56 (68)
T ss_dssp -CCCCEEECBCTTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCGGGCEECCHH
T ss_pred CCHHHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCHH
T ss_conf 98699878368798987379488998963876865625289022189994639999
No 5
>>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor} (A:)
Probab=99.86 E-value=3.5e-23 Score=143.88 Aligned_cols=56 Identities=36% Similarity=0.667 Sum_probs=54.3
Q ss_pred HHCCHHHHHHHCCCCCCCEEEEECCCCEEECHHCCCCCCCCCCEEECCHHHHEECC
Q ss_conf 00286889651167898736895678857752108124011763405877713044
Q gi|254780739|r 6 FNIDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVD 61 (64)
Q Consensus 6 ~~~~~~LL~iL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~deAr~l~ 61 (64)
|+||++||+||+||+|||+|+|+.++++|+|++|+++|||+|||||||+||||+++
T Consensus 1 M~~d~~LL~iL~CP~ck~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvlL~dear~le 56 (56)
T 2kpi_A 1 MPLEAGLLEILACPACHAPLEERDAELICTGQDCGLAYPVRDGIPVLLVDEARRPE 56 (56)
T ss_dssp CCCCCSCTTSCCCSSSCSCEEEETTEEEECSSSCCCEEEEETTEECCCTTTCBCCC
T ss_pred CCCCHHHHHHHCCCCCCCCCEECCCCCEEECCCCCEECCCCCCCCCCCHHHHCCCC
T ss_conf 99797999883388999945072877889768777036452891030988822779
No 6
>>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Neisseria meningitidis Z2491} (A:)
Probab=99.86 E-value=4.7e-23 Score=143.18 Aligned_cols=56 Identities=46% Similarity=0.887 Sum_probs=54.0
Q ss_pred CCHHHHHHHCCCCCCCEEEEECCCCEEECHHCCCCCCCCCCEEECCHHHHEECCCC
Q ss_conf 28688965116789873689567885775210812401176340587771304458
Q gi|254780739|r 8 IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63 (64)
Q Consensus 8 ~~~~LL~iL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~deAr~l~~~ 63 (64)
||++||+||+||+||++|.|+.++++|+|+.|+++|||+|||||||+++||+++++
T Consensus 1 md~~LL~iL~CP~ck~~L~~~~~~~~Lvc~~c~~~YPI~dGIPvlL~dear~l~~~ 56 (68)
T 2jr6_A 1 MEKKFLDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPYMLENEARPLSEE 56 (68)
T ss_dssp CCCSSSCCCBCSSSCCBCEEETTTTEEEETTTTEEEEEETTEECCCTTTCEECCHH
T ss_pred CCHHHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCHH
T ss_conf 98699978179798998179688998962865865625289022289994509999
No 7
>>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1} (A:)
Probab=99.83 E-value=6.6e-22 Score=137.14 Aligned_cols=56 Identities=25% Similarity=0.464 Sum_probs=52.4
Q ss_pred CCHHHHHHHCCCCCCCEEEEECC---------------------------CCEEECHHCCCCCCCCCCEEECCHHHHEEC
Q ss_conf 28688965116789873689567---------------------------885775210812401176340587771304
Q gi|254780739|r 8 IDPQLLEILVCPLTKGNLTLISE---------------------------GTELLSKKASLAYPIRSGVPIMLVSEARQV 60 (64)
Q Consensus 8 ~~~~LL~iL~CP~~k~~L~~~~~---------------------------~~~Lvc~~~~~~YPI~dgIPvLL~deAr~l 60 (64)
|+++||+|||||.|||+|+|.++ .++|+|+.|+++|||+|||||||+|+||.+
T Consensus 1 M~~~LLdiLaCP~ck~~L~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ei~~g~L~C~~c~~~YPI~dGIPvLL~dear~~ 80 (97)
T 2k5r_A 1 MDRKLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPEEAIAT 80 (97)
T ss_dssp CCTTTCSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCGGGEEEG
T ss_pred CCHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCEECHHHHHHH
T ss_conf 98688757178798991356453220012333201100122333224402484875764856244389332579997135
Q ss_pred CCC
Q ss_conf 458
Q gi|254780739|r 61 DDQ 63 (64)
Q Consensus 61 ~~~ 63 (64)
++|
T Consensus 81 ~~d 83 (97)
T 2k5r_A 81 IQI 83 (97)
T ss_dssp GGC
T ss_pred HHH
T ss_conf 676
No 8
>>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae} (A:)
Probab=98.05 E-value=5.8e-07 Score=58.02 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=24.6
Q ss_pred ECCCCEEECHHCCCCCCCCCCEEECCHHH
Q ss_conf 56788577521081240117634058777
Q gi|254780739|r 28 ISEGTELLSKKASLAYPIRSGVPIMLVSE 56 (64)
Q Consensus 28 ~~~~~~Lvc~~~~~~YPI~dgIPvLL~de 56 (64)
+..++.|+|+.|++.|||++|||.||..|
T Consensus 104 ~V~EG~LvCp~cgr~fpI~~GIPNMLL~e 132 (141)
T 2j6a_A 104 SIAEGEMKCRNCGHIYYIKNGIPNLLLPP 132 (141)
T ss_dssp EEEEEEEECTTTCCEEEEETTEESSCCCS
T ss_pred EEEECEEECCCCCCCCCCCCCCCCCCCCH
T ss_conf 75524688799998821326856546655
No 9
>>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} (A:)
Probab=95.80 E-value=0.0067 Score=36.50 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=36.9
Q ss_pred HHCCCCCCCEEEEECCCCEEECHHCCCCCCCCCCEEECCHHHHEEC
Q ss_conf 5116789873689567885775210812401176340587771304
Q gi|254780739|r 15 ILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQV 60 (64)
Q Consensus 15 iL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~deAr~l 60 (64)
.|+||.|+++|...+ ..+.|..|+..++.++|+-.++.+..+..
T Consensus 2 ~~~Cp~c~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (269)
T 1p91_A 2 SFSCPLCHQPLSREK--NSYICPQRHQFDXAKEGYVNLLPVQHKRS 45 (269)
T ss_dssp CBBCTTTCCBCEEET--TEEECTTCCEEEBCTTSCEECSCSSSSCS
T ss_pred CEECCCCCHHHHCCC--CEEEECCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 524889980441679--87993899631655684253475544456
No 10
>>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} (M:1-57)
Probab=95.09 E-value=0.012 Score=35.17 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=28.9
Q ss_pred CCHHHHHHHCCCCCCC---EEEEECCCCEEECHHCCCC
Q ss_conf 2868896511678987---3689567885775210812
Q gi|254780739|r 8 IDPQLLEILVCPLTKG---NLTLISEGTELLSKKASLA 42 (64)
Q Consensus 8 ~~~~LL~iL~CP~~k~---~L~~~~~~~~Lvc~~~~~~ 42 (64)
..+.+-+.++||.|++ .|..|.+.+++||..|++.
T Consensus 14 ~~~~~~~~~~CPeC~s~~~~lv~D~~~Ge~VC~~CGlV 51 (57)
T 3k1f_M 14 RGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (57)
T ss_dssp CSSCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred CCCCCEEEEECCCCCCCCCEEEEECCCCCEECCCCCEE
T ss_conf 79998644689899998988988798896797358919
No 11
>>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} (A:)
Probab=93.90 E-value=0.041 Score=32.33 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=25.0
Q ss_pred HHCCCCCCC-EEEEECCCCEEECHHCCCC
Q ss_conf 511678987-3689567885775210812
Q gi|254780739|r 15 ILVCPLTKG-NLTLISEGTELLSKKASLA 42 (64)
Q Consensus 15 iL~CP~~k~-~L~~~~~~~~Lvc~~~~~~ 42 (64)
-..||.|++ .+.+|.+.+++||..|++.
T Consensus 5 ~~~Cp~Cg~~~iv~D~~~Ge~vC~~CG~V 33 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCB
T ss_pred CCCCCCCCCCCEEEECCCCEEECCCCCCE
T ss_conf 55592987982788788791851269859
No 12
>>1dl6_A Transcription factor II B (TFIIB); zinc ribbon; NMR {Homo sapiens} (A:)
Probab=93.74 E-value=0.032 Score=32.89 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=27.6
Q ss_pred HHHHHHCCCCCCC-EEEEECCCCEEECHHCCCCC
Q ss_conf 8896511678987-36895678857752108124
Q gi|254780739|r 11 QLLEILVCPLTKG-NLTLISEGTELLSKKASLAY 43 (64)
Q Consensus 11 ~LL~iL~CP~~k~-~L~~~~~~~~Lvc~~~~~~Y 43 (64)
...+...||.|++ .+.+|.+.+++||..|++.-
T Consensus 7 ~~~~~~~Cp~Cg~~~iv~D~~~Ge~vC~~CG~Vl 40 (58)
T 1dl6_A 7 DALPRVTCPNHPDAILVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CCCSCCSBTTBSSSCCEECSSSCCEECTTTCCEE
T ss_pred CCCCCCCCCCCCCCCEEEECCCCEEECCCCCCEE
T ss_conf 3557559969979877788788818520299893
No 13
>>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} (A:1-62)
Probab=89.37 E-value=0.22 Score=28.50 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=26.7
Q ss_pred HHHCCCCCCCEEEEECCCCEEECHHCCCCCCCCC
Q ss_conf 6511678987368956788577521081240117
Q gi|254780739|r 14 EILVCPLTKGNLTLISEGTELLSKKASLAYPIRS 47 (64)
Q Consensus 14 ~iL~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~d 47 (64)
++-.||.|.+...|.... -+||+.|+..|+-.+
T Consensus 26 ~lP~CPkC~SeYTYeDg~-l~VCPECghEW~~~~ 58 (62)
T 2akl_A 26 TLPPCPQCNSEYTYEDGA-LLVCPECAHEWSPNE 58 (62)
T ss_dssp CSCCCTTTCCCCCEECSS-SEEETTTTEEECTTT
T ss_pred CCCCCCCCCCCCEECCCC-EEECCCCCCCCCCCC
T ss_conf 798898889913283799-889987637478553
No 14
>>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} (A:)
Probab=77.43 E-value=1.9 Score=23.53 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=21.7
Q ss_pred HCCCCCCCEEEEECCCCEEECHHCCCCCCCC
Q ss_conf 1167898736895678857752108124011
Q gi|254780739|r 16 LVCPLTKGNLTLISEGTELLSKKASLAYPIR 46 (64)
Q Consensus 16 L~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~ 46 (64)
+-||.|+++|+|.. +.-.|..|...|...
T Consensus 33 ~~CP~Cq~eL~w~~--g~yhC~~C~~~f~~~ 61 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--GHARCRSCGEFIEMK 61 (101)
T ss_dssp CBCSSSCSBEEEET--TEEEETTTCCEEEEE
T ss_pred CCCCCCCCCCEECC--CCEECHHHHHHHEEE
T ss_conf 25877778414548--988815652112047
No 15
>>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} (B:1-61)
Probab=73.37 E-value=0.55 Score=26.38 Aligned_cols=30 Identities=10% Similarity=0.052 Sum_probs=23.8
Q ss_pred HCCCCCCCEEEEEC-CCCEEECHHCCCCCCC
Q ss_conf 11678987368956-7885775210812401
Q gi|254780739|r 16 LVCPLTKGNLTLIS-EGTELLSKKASLAYPI 45 (64)
Q Consensus 16 L~CP~~k~~L~~~~-~~~~Lvc~~~~~~YPI 45 (64)
..||.|+.-+...+ +++.-||+.|+..|+|
T Consensus 31 ~KCp~C~~~~~~k~l~~n~~VCp~Cg~Hfri 61 (61)
T 2f9i_B 31 TKCPKCKKIMYTKELAENLNVCFNCDHHIAL 61 (61)
T ss_dssp EECTTTCCEEEHHHHHHTTTBCTTTCCBCCC
T ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCCCCC
T ss_conf 3588987402499999848878499897705
No 16
>>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} (A:1-30)
Probab=70.30 E-value=2.7 Score=22.71 Aligned_cols=27 Identities=15% Similarity=0.423 Sum_probs=20.6
Q ss_pred HCCCCCCCEEEEECCCCEEECHHCCCCCC
Q ss_conf 11678987368956788577521081240
Q gi|254780739|r 16 LVCPLTKGNLTLISEGTELLSKKASLAYP 44 (64)
Q Consensus 16 L~CP~~k~~L~~~~~~~~Lvc~~~~~~YP 44 (64)
|-||+|+.+|+- +++.-.|..|-.-|-
T Consensus 3 i~cpvch~~ler--ng~tahcatc~kdf~ 29 (30)
T 2jrp_A 3 ITCPVCHHALER--NGDTAHCETCAKDFS 29 (30)
T ss_dssp CCCSSSCSCCEE--CSSEEECTTTCCEEE
T ss_pred CCCCCCCCEEEE--CCCCEECHHHHHHHH
T ss_conf 878887795044--599758256642242
No 17
>>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12} (A:318-477)
Probab=60.37 E-value=5.3 Score=21.17 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=19.5
Q ss_pred HCCCCCCCEEEEECCCCEEECHH
Q ss_conf 11678987368956788577521
Q gi|254780739|r 16 LVCPLTKGNLTLISEGTELLSKK 38 (64)
Q Consensus 16 L~CP~~k~~L~~~~~~~~Lvc~~ 38 (64)
-.||.|+++|...++...+.|..
T Consensus 89 ~~CPsCgs~l~~~~~~~~~~C~N 111 (160)
T 2owo_A 89 THCPVCGSDVERVEGEAVARCTG 111 (160)
T ss_dssp SBCTTTCCBEEECTTCSCEEECC
T ss_pred CCCCCCCCCCCCCCCCEEEEECC
T ss_conf 46555576334447863589669
No 18
>>2ba1_A Archaeal exosome RNA binding protein CSL4; RNAse PH, RNA degradation, exoribonuclease, RNA binding, S1 domain, Zn-ribbon, phosphorolytic; 2.70A {Archaeoglobus fulgidus} (A:146-179)
Probab=59.84 E-value=4.3 Score=21.62 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=15.3
Q ss_pred CCCEEEEECCCCEEECHHCCCC
Q ss_conf 9873689567885775210812
Q gi|254780739|r 21 TKGNLTLISEGTELLSKKASLA 42 (64)
Q Consensus 21 ~k~~L~~~~~~~~Lvc~~~~~~ 42 (64)
|+++|.. +++.|+|+.|+..
T Consensus 1 C~~~Lv~--~~~kL~CP~Cgrv 20 (34)
T 2ba1_A 1 CKTEMVR--EGDILKCPECGRV 20 (34)
T ss_dssp TCCBCEE--ETTEEECTTTCCE
T ss_pred CCCCEEE--ECCEEECCCCCCE
T ss_conf 8861745--4998999999985
No 19
>>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=58.18 E-value=5.8 Score=20.95 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=25.9
Q ss_pred HHHCCCCCCCEEEEECCCCEEECHHCCCCCC
Q ss_conf 6511678987368956788577521081240
Q gi|254780739|r 14 EILVCPLTKGNLTLISEGTELLSKKASLAYP 44 (64)
Q Consensus 14 ~iL~CP~~k~~L~~~~~~~~Lvc~~~~~~YP 44 (64)
++.-||.|+....++...+..+|..|+..|=
T Consensus 24 ~~~~CP~c~~~~~~~~~~~~~~C~~C~~~fC 54 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFC 54 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEEC
T ss_pred CCEECCCCCCEEEECCCCCEEECCCCCCEEC
T ss_conf 9648999997589779999778999898353
No 20
>>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718} (A:1-37)
Probab=55.46 E-value=7.5 Score=20.35 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=20.4
Q ss_pred CCCCCCCEEEEEC----CCCEEECHHCCC
Q ss_conf 1678987368956----788577521081
Q gi|254780739|r 17 VCPLTKGNLTLIS----EGTELLSKKASL 41 (64)
Q Consensus 17 ~CP~~k~~L~~~~----~~~~Lvc~~~~~ 41 (64)
-|+.|++++.+.. +...+||..|+.
T Consensus 5 fC~~CG~~v~~~IP~GD~r~R~VC~~Cg~ 33 (37)
T 3cng_A 5 FCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (37)
T ss_dssp BCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred ECCCCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 88233785613557888603765699997
No 21
>>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} (A:316-426)
Probab=54.34 E-value=8.1 Score=20.19 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=16.4
Q ss_pred HCCCCCCCEEEEECCCCEEECHH
Q ss_conf 11678987368956788577521
Q gi|254780739|r 16 LVCPLTKGNLTLISEGTELLSKK 38 (64)
Q Consensus 16 L~CP~~k~~L~~~~~~~~Lvc~~ 38 (64)
-.||.|+++|..++ ..++|..
T Consensus 89 ~~CP~C~s~l~~~~--~~~~C~N 109 (111)
T 1dgs_A 89 EACPECGHRLVKEG--KVHRCPN 109 (111)
T ss_dssp SBCTTTCCBCEEET--TEEECCC
T ss_pred CCCCCCCCEEEECC--CEEEECC
T ss_conf 98999899801046--2589689
No 22
>>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, DNA damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A (A:76-160)
Probab=48.71 E-value=7.5 Score=20.37 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=14.3
Q ss_pred HHCCCCCCCEEEEECCC
Q ss_conf 51167898736895678
Q gi|254780739|r 15 ILVCPLTKGNLTLISEG 31 (64)
Q Consensus 15 iL~CP~~k~~L~~~~~~ 31 (64)
+..||.|+|.|+|+.+.
T Consensus 3 L~~Cp~C~gql~~~~~~ 19 (85)
T 2riq_A 3 LLPCEECSGQLVFKSDA 19 (85)
T ss_dssp ECCCTTTCCCEEEETTE
T ss_pred CCCCCCCCCEEEEECCC
T ss_conf 88998889988870894
No 23
>>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} (A:)
Probab=45.79 E-value=10 Score=19.59 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=26.1
Q ss_pred CCCCCCCEEEEECCCCEEECHHCCCCCCCCC
Q ss_conf 1678987368956788577521081240117
Q gi|254780739|r 17 VCPLTKGNLTLISEGTELLSKKASLAYPIRS 47 (64)
Q Consensus 17 ~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~d 47 (64)
-||.|+.-..+-.-.+...|-+|++.|=..+
T Consensus 20 ~Cp~Cg~GvfmA~H~dR~~CGKCg~T~~~~~ 50 (55)
T 2k4x_A 20 FCPRCGPGVFLAEHADRYSCGRCGYTEFKKA 50 (55)
T ss_dssp CCTTTTTTCCCEECSSEEECTTTCCCEECCC
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCEEECCC
T ss_conf 5969999477412599776447656078125
No 24
>>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} (A:)
Probab=41.26 E-value=12 Score=19.32 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=22.0
Q ss_pred CCCCCCCEEEEECCC---CEEECHHCCCCCCCC
Q ss_conf 167898736895678---857752108124011
Q gi|254780739|r 17 VCPLTKGNLTLISEG---TELLSKKASLAYPIR 46 (64)
Q Consensus 17 ~CP~~k~~L~~~~~~---~~Lvc~~~~~~YPI~ 46 (64)
.||.|++|=.-...+ ..|.|.+|+-..||.
T Consensus 2 iC~~C~spdT~L~ke~Rl~~l~C~aCGA~~~V~ 34 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIRPIR 34 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEEEEC
T ss_pred CCCCCCCCCCEEEECCCEEEEEECCCCCCCCCC
T ss_conf 997878988898982887999843689986134
No 25
>>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} (A:12-82)
Probab=40.83 E-value=9.8 Score=19.75 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=30.2
Q ss_pred CCCCCCCEEEE-ECCCCEEECHHCCCCCCCCCCEEECC
Q ss_conf 16789873689-56788577521081240117634058
Q gi|254780739|r 17 VCPLTKGNLTL-ISEGTELLSKKASLAYPIRSGVPIML 53 (64)
Q Consensus 17 ~CP~~k~~L~~-~~~~~~Lvc~~~~~~YPI~dgIPvLL 53 (64)
+||.-+.+|.. ..+...+.|+..+..|-+++|-++=-
T Consensus 30 ~CpH~g~~l~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~ 67 (71)
T 3dqy_A 30 TCTHGDWALSDGYLDGDIVECTLHFGKFXVRTGKVKAL 67 (71)
T ss_dssp BCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEET
T ss_pred CCCCEEEEEEEEECCCCEEEEECCCCEEECCCCEEECC
T ss_conf 31233587312140599999745887898898229458
No 26
>>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* (K:)
Probab=39.69 E-value=3.6 Score=22.05 Aligned_cols=39 Identities=13% Similarity=0.247 Sum_probs=27.3
Q ss_pred CCHHHHHHHCCCCCCCEEEEECCCC---EEECHHCCCCCCCC
Q ss_conf 2868896511678987368956788---57752108124011
Q gi|254780739|r 8 IDPQLLEILVCPLTKGNLTLISEGT---ELLSKKASLAYPIR 46 (64)
Q Consensus 8 ~~~~LL~iL~CP~~k~~L~~~~~~~---~Lvc~~~~~~YPI~ 46 (64)
++..+-+...||.|+.|=.-...++ .|.|.+|+...||.
T Consensus 96 l~~yI~~yVlC~~C~spdT~l~k~~r~~~lkC~aCGa~~~V~ 137 (139)
T 3cw2_K 96 MERFLKAYVECSTCKSLDTILKKEKKSWYIVCLACGAQTPVK 137 (139)
T ss_dssp TTTTSSCCSSCCSSSSSCCCSCSSCSTTTSSCCC--------
T ss_pred HHHHHHHEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCCC
T ss_conf 999987678989999973199996985999815789998678
No 27
>>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} (A:72-121)
Probab=37.91 E-value=14 Score=18.88 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=14.1
Q ss_pred HHHHHHCCCCCCCEEEEECC
Q ss_conf 88965116789873689567
Q gi|254780739|r 11 QLLEILVCPLTKGNLTLISE 30 (64)
Q Consensus 11 ~LL~iL~CP~~k~~L~~~~~ 30 (64)
..-++-.||.|+++|...++
T Consensus 28 ~~~~~~~CPkCgs~l~i~E~ 47 (50)
T 3ir9_A 28 PAPAAGNCPKCGSSLEVTDV 47 (50)
T ss_dssp CCCCCCBCTTTCCBEEEEEE
T ss_pred CCCCCCCCCCCCCCHHHHHH
T ss_conf 34334568555630221101
No 28
>>1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM, FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A {Lactococcus lactis} (A:137-272)
Probab=36.41 E-value=25 Score=17.59 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=19.8
Q ss_pred HCCCCCCCEEEEEC--CCCEEECHHCCC
Q ss_conf 11678987368956--788577521081
Q gi|254780739|r 16 LVCPLTKGNLTLIS--EGTELLSKKASL 41 (64)
Q Consensus 16 L~CP~~k~~L~~~~--~~~~Lvc~~~~~ 41 (64)
.-||.|++++.... +...-+|+.|+.
T Consensus 108 ~~C~~CG~~I~~~~~~gR~t~~CP~CQ~ 135 (136)
T 1tdz_A 108 EKCSRCGAEIQKIKVAGRGTHFCPVCQQ 135 (136)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCEEEEEEECCCCEEECCCCCC
T ss_conf 9799999999999989990299916469
No 29
>>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} (A:14-84)
Probab=33.68 E-value=17 Score=18.50 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=30.8
Q ss_pred CCCCCCCEEEE-ECCCCEEECHHCCCCCCCCCCEEECCH
Q ss_conf 16789873689-567885775210812401176340587
Q gi|254780739|r 17 VCPLTKGNLTL-ISEGTELLSKKASLAYPIRSGVPIMLV 54 (64)
Q Consensus 17 ~CP~~k~~L~~-~~~~~~Lvc~~~~~~YPI~dgIPvLL~ 54 (64)
+||.-+.+|.. ..+.+.|+|+--+-.|-+.+|-++-.|
T Consensus 30 ~CpH~g~~L~~g~~~~~~i~Cp~H~~~fdl~tG~~~~~P 68 (71)
T 2qpz_A 30 LCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAP 68 (71)
T ss_dssp BCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEETT
T ss_pred ECCCCCCCCEECCCCCCEEEECCCCCEEECCCCCEECCC
T ss_conf 779634341012378999986168989968982284488
No 30
>>2ckl_A Polycomb group ring finger protein 4; BMI1, zinc, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 2h0d_A (A:1-84)
Probab=33.35 E-value=18 Score=18.32 Aligned_cols=55 Identities=16% Similarity=0.063 Sum_probs=32.4
Q ss_pred CCCCHHHCCHHHHHHHCCCCCCCEEEEEC---C--------------CCEEECHHCCCCCCCCCCEEECCHH
Q ss_conf 96510002868896511678987368956---7--------------8857752108124011763405877
Q gi|254780739|r 1 MRETIFNIDPQLLEILVCPLTKGNLTLIS---E--------------GTELLSKKASLAYPIRSGVPIMLVS 55 (64)
Q Consensus 1 m~~~~~~~~~~LL~iL~CP~~k~~L~~~~---~--------------~~~Lvc~~~~~~YPI~dgIPvLL~d 55 (64)
|.+......+.+-+-+.||+|...+.-.. . .+.-.|+.|+......+.++.+-.+
T Consensus 1 m~~~~~~~~~~~~~~~~C~IC~~~~~~pv~~~~CgH~fc~~Ci~~~l~~~~~CP~Cr~~~~~~~~~~~~~~~ 72 (84)
T 2ckl_A 1 MHRTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSD 72 (84)
T ss_dssp -----CEEHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEEC
T ss_pred CCCCCCCCHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 997660426329999999778956537876899997437999999980499999985551557320124766
No 31
>>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxidoreductase; 1.60A {Burkholderia xenovorans LB400} (A:16-87)
Probab=32.69 E-value=15 Score=18.82 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=28.6
Q ss_pred CCCCCCCEEEEEC--CCCEEECHHCCCCCCCCCCEEE
Q ss_conf 1678987368956--7885775210812401176340
Q gi|254780739|r 17 VCPLTKGNLTLIS--EGTELLSKKASLAYPIRSGVPI 51 (64)
Q Consensus 17 ~CP~~k~~L~~~~--~~~~Lvc~~~~~~YPI~dgIPv 51 (64)
.||.-+++|.... +...++|+-.+..|-+.+|=.+
T Consensus 30 ~CpH~g~~l~~g~~~~~~~i~Cp~Hg~~F~l~tG~~~ 66 (72)
T 1fqt_A 30 RCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVK 66 (72)
T ss_dssp BCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEE
T ss_pred CCCCCCCEEEECCEECCCEEECCCCCCEEECCCCCCC
T ss_conf 6898897887544474887885888989999985694
No 32
>>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae} (B:)
Probab=32.42 E-value=35 Score=16.80 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=21.1
Q ss_pred HCCCCCCCEEEEEC---------CCCEEECHHCCCCCCC
Q ss_conf 11678987368956---------7885775210812401
Q gi|254780739|r 16 LVCPLTKGNLTLIS---------EGTELLSKKASLAYPI 45 (64)
Q Consensus 16 L~CP~~k~~L~~~~---------~~~~Lvc~~~~~~YPI 45 (64)
|.||.|++.-.+.. ....+.|+.|+-.+|.
T Consensus 23 l~C~~C~~~~~f~gv~~~~~~~~~~~g~~C~~c~~~~~~ 61 (206)
T 3flo_B 23 LSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTP 61 (206)
T ss_dssp EECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBCCH
T ss_pred EECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 889999983247871037776211477888898991899
No 33
>>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} (A:1-147)
Probab=32.35 E-value=26 Score=17.51 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=29.7
Q ss_pred CCCCCCCEEEEEC---CCCEEECHHCCCCCCCCCCEEECCHH
Q ss_conf 1678987368956---78857752108124011763405877
Q gi|254780739|r 17 VCPLTKGNLTLIS---EGTELLSKKASLAYPIRSGVPIMLVS 55 (64)
Q Consensus 17 ~CP~~k~~L~~~~---~~~~Lvc~~~~~~YPI~dgIPvLL~d 55 (64)
+||..+++|.... +.+.++|+-.+..|-+++|-.+-.+.
T Consensus 68 ~CpH~g~~L~~g~~~~~~~~i~Cp~H~~~f~l~tG~~~~~p~ 109 (147)
T 2de6_A 68 RCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILT 109 (147)
T ss_dssp SCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTTCBEEEETT
T ss_pred CCCCCCCEEECCCCCCCCCEEECCCCCEEEECCCCCCCCCCC
T ss_conf 888999885567322779967879788599535441000000
No 34
>>1k3x_A Endonuclease VIII; hydrolase/DNA; HET: BRU PED; 1.25A {Escherichia coli} (A:125-262)
Probab=31.42 E-value=33 Score=16.98 Aligned_cols=25 Identities=4% Similarity=-0.045 Sum_probs=18.9
Q ss_pred CCCCCCCEEEEEC--CCCEEECHHCCC
Q ss_conf 1678987368956--788577521081
Q gi|254780739|r 17 VCPLTKGNLTLIS--EGTELLSKKASL 41 (64)
Q Consensus 17 ~CP~~k~~L~~~~--~~~~Lvc~~~~~ 41 (64)
.||.|+++++... +...-+|+.|+.
T Consensus 112 ~C~~Cg~~I~~~~~~gR~t~~CP~CQk 138 (138)
T 1k3x_A 112 PCERCGSIIEKTTLSSRPFYWCPGCQH 138 (138)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCCCCCCEEEEEEECCCCCEECCCCCC
T ss_conf 699999899999989890389914269
No 35
>>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} (A:)
Probab=30.96 E-value=35 Score=16.80 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=26.7
Q ss_pred HCCHHHHHH----HC--CCCC-CCEEEEECCCCEEECHHCCCCCCCCC
Q ss_conf 028688965----11--6789-87368956788577521081240117
Q gi|254780739|r 7 NIDPQLLEI----LV--CPLT-KGNLTLISEGTELLSKKASLAYPIRS 47 (64)
Q Consensus 7 ~~~~~LL~i----L~--CP~~-k~~L~~~~~~~~Lvc~~~~~~YPI~d 47 (64)
.++++.|.. ++ -|.+ ++.|..........|..|+..|++.+
T Consensus 40 ~V~p~~L~faf~~~~~~T~l~ega~L~i~~~p~~~~C~~Cg~~~~~~~ 87 (119)
T 2kdx_A 40 AMDKSLFVSAFETFREESLVCKDAILDIVDEKVELECKDCSHVFKPNA 87 (119)
T ss_dssp CCCHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECSSSSCEECSCC
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEECCCCCCEECCCC
T ss_conf 408999999999996798445376899996386689778998853477
No 36
>>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* 3jr5_A* ... (A:133-256)
Probab=30.66 E-value=28 Score=17.37 Aligned_cols=25 Identities=4% Similarity=-0.023 Sum_probs=19.0
Q ss_pred CCCCCCCEEEEEC--CCCEEECHHCCC
Q ss_conf 1678987368956--788577521081
Q gi|254780739|r 17 VCPLTKGNLTLIS--EGTELLSKKASL 41 (64)
Q Consensus 17 ~CP~~k~~L~~~~--~~~~Lvc~~~~~ 41 (64)
.||.|+++++... +.+.-+|+.|+.
T Consensus 98 ~C~~CG~~I~~~~~~~R~t~~CP~CQK 124 (124)
T 3gpu_A 98 PCKRCGTPIEKTVVAGRGTHYCPRCQR 124 (124)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCCCCCCEEEEEEECCCCCEECCCCCC
T ss_conf 779999989999999981198501139
No 37
>>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans R1} (A:83-244)
Probab=30.58 E-value=36 Score=16.76 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=26.8
Q ss_pred HHHCCCCCCCEE--EEECCCCEEECHHCCCCCCCCCC
Q ss_conf 651167898736--89567885775210812401176
Q gi|254780739|r 14 EILVCPLTKGNL--TLISEGTELLSKKASLAYPIRSG 48 (64)
Q Consensus 14 ~iL~CP~~k~~L--~~~~~~~~Lvc~~~~~~YPI~dg 48 (64)
+.-.|-.|+.+. .++...+.++|..|+..+++..+
T Consensus 67 ~l~~C~~cg~~~~~~fs~~~gg~vc~~c~~~~~~~~~ 103 (162)
T 1u5k_A 67 QTARCARCGAPDPEHPDPLGGQLLCSKCAALPPYPPA 103 (162)
T ss_dssp CCSBCTTTCCBSCCEECTTTSSEECTTTCSSCCCCHH
T ss_pred CHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCHH
T ss_conf 7566750478887600321390454676556888999
No 38
>>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, Zn-binding protein, DNA-binding, transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A (A:)
Probab=30.07 E-value=26 Score=17.46 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=18.5
Q ss_pred HCCCCCC-CEEEEEC---------------CCCEEECHHCCCCC
Q ss_conf 1167898-7368956---------------78857752108124
Q gi|254780739|r 16 LVCPLTK-GNLTLIS---------------EGTELLSKKASLAY 43 (64)
Q Consensus 16 L~CP~~k-~~L~~~~---------------~~~~Lvc~~~~~~Y 43 (64)
..||.|+ +.|.-.. +-...+|..|+-.|
T Consensus 3 MkCp~Cg~g~l~~~~~~~~~~y~G~~~~I~~vp~~~C~~CGE~~ 46 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESI 46 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEE
T ss_pred CCCCCCCCCEEECCEEEEEEEECCEEEEECCCCCCCCCCCCCEE
T ss_conf 60885898143644055589989899997676754279998777
No 39
>>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (B:1155-1224)
Probab=29.92 E-value=29 Score=17.26 Aligned_cols=29 Identities=7% Similarity=0.032 Sum_probs=23.1
Q ss_pred HHHCCCCCCCEE-EEECCCCEEECHHCCCC
Q ss_conf 651167898736-89567885775210812
Q gi|254780739|r 14 EILVCPLTKGNL-TLISEGTELLSKKASLA 42 (64)
Q Consensus 14 ~iL~CP~~k~~L-~~~~~~~~Lvc~~~~~~ 42 (64)
++.+|+.|+.-+ .++..++..+|+.|+-.
T Consensus 5 ~~~VC~~CG~i~~~~~~~~~~~~C~~C~~~ 34 (70)
T 1twf_B 5 RVHICGICGLMTVIAKLNHNQFECKGCDNK 34 (70)
T ss_dssp EEEEESSSCSSCCEEETTTTEEEBTTTTBS
T ss_pred CEEECCCCCCEEEEECCCCCCEEECCCCCC
T ss_conf 054003777468874144363170577788
No 40
>>2waq_B DNA-directed RNA polymerase RPO2 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_B 2pmz_B 3hkz_B (B:1056-1131)
Probab=29.56 E-value=13 Score=19.10 Aligned_cols=28 Identities=11% Similarity=-0.083 Sum_probs=22.9
Q ss_pred HHHCCCCCCCEEEEECCCCEEECHHCCC
Q ss_conf 6511678987368956788577521081
Q gi|254780739|r 14 EILVCPLTKGNLTLISEGTELLSKKASL 41 (64)
Q Consensus 14 ~iL~CP~~k~~L~~~~~~~~Lvc~~~~~ 41 (64)
.+.+|..|+.-+..+...+..+|+.|+-
T Consensus 5 ~~~VC~~CG~i~~~~~~~~~~~C~~C~~ 32 (76)
T 2waq_B 5 TIYVCDQCGYIGWYDKNKNKYVCPIHGD 32 (76)
T ss_dssp EEEECSSSCCCCCCCSSSSCCCCTTCSS
T ss_pred CEEECCCCCCEEEEECCCCCEECCCCCC
T ss_conf 3030467786688853587146763588
No 41
>>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A* (A:)
Probab=29.43 E-value=41 Score=16.44 Aligned_cols=29 Identities=3% Similarity=0.232 Sum_probs=18.9
Q ss_pred CCCCCEEEEECCCCEEECHHCCCCCCCCC
Q ss_conf 78987368956788577521081240117
Q gi|254780739|r 19 PLTKGNLTLISEGTELLSKKASLAYPIRS 47 (64)
Q Consensus 19 P~~k~~L~~~~~~~~Lvc~~~~~~YPI~d 47 (64)
|.-++.|+...-.....|..|+..|++.+
T Consensus 56 ~~egA~L~Ie~~p~~~~C~~Cg~~~~~~~ 84 (139)
T 3a43_A 56 IAEGAEIEFVEEEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp TTTTCEEEEEEECCEEEETTTCCEEEGGG
T ss_pred CCCCCEEEEEECCCEEECCCCCCEEECCC
T ss_conf 66898899996087279866898400141
No 42
>>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} (A:)
Probab=29.09 E-value=46 Score=16.16 Aligned_cols=35 Identities=9% Similarity=0.184 Sum_probs=24.9
Q ss_pred HHHHHHCCCCCCC----EEEEECC--CCEEECHHCCCCCCC
Q ss_conf 8896511678987----3689567--885775210812401
Q gi|254780739|r 11 QLLEILVCPLTKG----NLTLISE--GTELLSKKASLAYPI 45 (64)
Q Consensus 11 ~LL~iL~CP~~k~----~L~~~~~--~~~Lvc~~~~~~YPI 45 (64)
.|-..--||.|.+ ...++.. .+.|.|..|+..|-.
T Consensus 19 kL~t~F~CPfCnh~~sV~vkidk~~~~g~i~C~vCg~~~~~ 59 (85)
T 1wii_A 19 TLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred CCCCEECCCCCCCCCEEEEEEEECCCEEEEEEEECCCEEEE
T ss_conf 99963539978898759999992279899998507883786
No 43
>>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} (A:)
Probab=25.63 E-value=42 Score=16.38 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=15.3
Q ss_pred CCCCCCCEEEEECCCCEEECHHCCCCCCCC
Q ss_conf 167898736895678857752108124011
Q gi|254780739|r 17 VCPLTKGNLTLISEGTELLSKKASLAYPIR 46 (64)
Q Consensus 17 ~CP~~k~~L~~~~~~~~Lvc~~~~~~YPI~ 46 (64)
.||.|+|+|+... ...+--|||.
T Consensus 112 ~CpnC~g~L~~~~-------Crgh~gypvT 134 (174)
T 1odh_A 112 SCPNCNGPLKLIP-------CRGHGGFPVT 134 (174)
T ss_dssp BCSSSCCBEEEEC-------CCTBTTBCCE
T ss_pred CCCCCCCCEEEEE-------CCCCCCCCEE
T ss_conf 9989987157776-------3675687227
No 44
>>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (B:1143-1210)
Probab=25.07 E-value=16 Score=18.61 Aligned_cols=30 Identities=7% Similarity=0.040 Sum_probs=24.7
Q ss_pred HHHCCCCCCCEEEEECCCCEEECHHCCCCC
Q ss_conf 651167898736895678857752108124
Q gi|254780739|r 14 EILVCPLTKGNLTLISEGTELLSKKASLAY 43 (64)
Q Consensus 14 ~iL~CP~~k~~L~~~~~~~~Lvc~~~~~~Y 43 (64)
++.+|+.|+.-+..+...+..+|+.|+..-
T Consensus 6 ~~~VC~~CG~~~~~~~~~~~~~C~~C~~~~ 35 (68)
T 3h0g_B 6 RVIVCDICGLIAIASYKKDSYECRSCQNRT 35 (68)
T ss_dssp EEEEESSSCCBCCCCSSSCCCCCTTTCCSS
T ss_pred CEEECCCCCCEEEECCCCCCEECCCCCCCC
T ss_conf 135036778765402446855656023898
No 45
>>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} (A:)
Probab=23.73 E-value=21 Score=18.01 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=10.9
Q ss_pred HCCCCCCCEEEEEC
Q ss_conf 11678987368956
Q gi|254780739|r 16 LVCPLTKGNLTLIS 29 (64)
Q Consensus 16 L~CP~~k~~L~~~~ 29 (64)
-.||+|+.+|.|.+
T Consensus 9 akCPlCG~~ldW~e 22 (95)
T 2k5c_A 9 AKCPICGSPLKWEE 22 (95)
T ss_dssp EECSSSCCEECHHH
T ss_pred HCCCCCCCCCCHHH
T ss_conf 23886788267999
No 46
>>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} (A:)
Probab=23.05 E-value=49 Score=16.04 Aligned_cols=26 Identities=12% Similarity=0.209 Sum_probs=17.5
Q ss_pred HCCCCCCCEEE-------EECCCCEEECHHCCC
Q ss_conf 11678987368-------956788577521081
Q gi|254780739|r 16 LVCPLTKGNLT-------LISEGTELLSKKASL 41 (64)
Q Consensus 16 L~CP~~k~~L~-------~~~~~~~Lvc~~~~~ 41 (64)
.+||.|+.... ++...+.++|..|+-
T Consensus 15 y~Cp~C~~~ys~Lda~~Lld~~~~~F~C~~C~~ 47 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHT 47 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCC
T ss_pred EECCCCCCEECHHHHHHHCCCCCCEEEECCCCC
T ss_conf 099898899467669871597899197358999
No 47
>>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} (A:31-81)
Probab=22.92 E-value=32 Score=17.05 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=17.0
Q ss_pred CCCCCCCEEEEEC----------CCCEEECHHCCCCC
Q ss_conf 1678987368956----------78857752108124
Q gi|254780739|r 17 VCPLTKGNLTLIS----------EGTELLSKKASLAY 43 (64)
Q Consensus 17 ~CP~~k~~L~~~~----------~~~~Lvc~~~~~~Y 43 (64)
.||.|.++|+--+ ..++|++++ +..|
T Consensus 3 ~CPdC~~~Lq~LkACGAvdYFC~~~~~LiSK~-rV~f 38 (51)
T 2jrp_A 3 LCPDCRQPLQVLKACGAVDYFCQNGHGLISKK-RVNF 38 (51)
T ss_dssp ECSSSCSCCCEEEETTEEEECCTTTTCCCCTT-SSEE
T ss_pred ECCCCCCHHHHHHHCCCHHHHHCCCCCEEEEE-EEEE
T ss_conf 68761308999887162235545798525710-6999
No 48
>>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} (A:)
Probab=22.04 E-value=27 Score=17.39 Aligned_cols=50 Identities=6% Similarity=-0.055 Sum_probs=29.5
Q ss_pred HCCHHHHHHHCCCCCCCEEEEEC---C--------------CCEEECHHCCCCCCCCCCEEECCHHH
Q ss_conf 02868896511678987368956---7--------------88577521081240117634058777
Q gi|254780739|r 7 NIDPQLLEILVCPLTKGNLTLIS---E--------------GTELLSKKASLAYPIRSGVPIMLVSE 56 (64)
Q Consensus 7 ~~~~~LL~iL~CP~~k~~L~~~~---~--------------~~~Lvc~~~~~~YPI~dgIPvLL~de 56 (64)
.....+-+.+.||+|...+..-. . ...=.|+.|+..+.+.+=+|.-...+
T Consensus 14 ~~~~~~~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~~~~l~~ 80 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKE 80 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHH
T ss_pred HHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 7541890760983703488768872112017449999999861787776535454324576999999
No 49
>>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} (A:)
Probab=22.03 E-value=35 Score=16.83 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=17.0
Q ss_pred HHCCCCCCCEEEEECCCCE-EE-CHHCC
Q ss_conf 5116789873689567885-77-52108
Q gi|254780739|r 15 ILVCPLTKGNLTLISEGTE-LL-SKKAS 40 (64)
Q Consensus 15 iL~CP~~k~~L~~~~~~~~-Lv-c~~~~ 40 (64)
...||.|+.+..|..+... =+ |.+|+
T Consensus 9 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk 36 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQ 36 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 2058899984445766875872537661
No 50
>>3gn5_A HTH-type transcriptional regulator MQSA (YGIT/B3021); Zn-binding protein, HTH-XRE DNA binding motif, DNA-binding, transcription regulation; HET: MEQ; 2.15A {Escherichia coli k-12} PDB: 3gn5_B* (A:1-71)
Probab=21.89 E-value=48 Score=16.07 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=17.0
Q ss_pred HCCCCCC-CEEEEECCC---------------CEEECHHCCCCC
Q ss_conf 1167898-736895678---------------857752108124
Q gi|254780739|r 16 LVCPLTK-GNLTLISEG---------------TELLSKKASLAY 43 (64)
Q Consensus 16 L~CP~~k-~~L~~~~~~---------------~~Lvc~~~~~~Y 43 (64)
..||+|+ +.|.-+... ...+|+.|+-.|
T Consensus 3 MkCPiCg~g~L~~~~~~~~~tYkG~s~~I~~v~g~~C~~CGE~i 46 (71)
T 3gn5_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESI 46 (71)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEE
T ss_pred CCCCCCCCCCEECCCCCEEEEECCEEEEEECCCCEECCCCCCCC
T ss_conf 88978999030202242268878889999076401882327844
Done!