RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780739|ref|YP_003065152.1| hypothetical protein
CLIBASIA_03130 [Candidatus Liberibacter asiaticus str. psy62]
         (64 letters)



>gnl|CDD|183328 PRK11827, PRK11827, hypothetical protein; Provisional.
          Length = 60

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 23/51 (45%), Positives = 35/51 (68%)

Query: 8  IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEAR 58
          +D +LLEI+ CP+  G L    E  EL+ K  +LA+P+R G+P++L +EAR
Sbjct: 1  MDHRLLEIIACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPVLLETEAR 51


>gnl|CDD|152576 pfam12141, DUF3589, Protein of unknown function (DUF3589).  This
           family of proteins is found in eukaryotes. Proteins in
           this family are typically between 541 and 717 amino
           acids in length. The function of this family is not
           known,.
          Length = 488

 Score = 26.9 bits (60), Expect = 1.2
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 5   IFNIDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSG---VPI 51
           ++   P  LEIL C L  G+   + +    L  K     P+R G   V I
Sbjct: 276 VYRWAP--LEILKCSLDSGDCDFVYKPEFQLKDKNK-VGPLRGGTNLVNI 322


>gnl|CDD|178953 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
          family protein; Reviewed.
          Length = 272

 Score = 26.2 bits (59), Expect = 2.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 8  IDPQLLEILVCPLTKGNLTLI 28
          ID  L  IL     + NLT+I
Sbjct: 72 IDRDLAPILAETFAEDNLTII 92


>gnl|CDD|183432 PRK12316, PRK12316, peptide synthase; Provisional.
          Length = 5163

 Score = 24.9 bits (54), Expect = 5.0
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 6   FNIDPQLLEILVCPLTKGNLT---LISEGTELLSKKASLAYPIRSGVPI 51
           F+IDP L E L     +  LT   L+     +L  + S    IR GVPI
Sbjct: 275 FSIDPALAEALRGTARRQGLTLFMLLLGAFNVLLHRYSGQTDIRVGVPI 323


>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase
           inhibitor.
          Length = 509

 Score = 23.8 bits (51), Expect = 9.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 14  EILVCPLTKGNLTLISEGTELLSKKASLAY 43
           EI+    TK NLTLI +G +      +L+ 
Sbjct: 238 EIVRIGSTKPNLTLIGDGQDSTIITGNLSA 267


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.137    0.375 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 954,735
Number of extensions: 42095
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 10
Length of query: 64
Length of database: 5,994,473
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,238,193
Effective search space: 151907597
Effective search space used: 151907597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)