RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780739|ref|YP_003065152.1| hypothetical protein
CLIBASIA_03130 [Candidatus Liberibacter asiaticus str. psy62]
(64 letters)
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthesis,
NESG, structural genomics, PSI-2; 1.90A
{Chromobacterium violaceum atcc 12472} SCOP: b.171.1.1
Length = 68
Score = 83.5 bits (207), Expect = 1e-17
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 8 IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63
+D + LEILVCPL KG L EL+ K LA+PI+ G+P+ML SEAR++ +
Sbjct: 1 MDAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEARELAPE 56
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics
consortium, beta, PSI-2, protein structure initiative;
NMR {Bordetella bronchiseptica RB50}
Length = 70
Score = 82.0 bits (203), Expect = 2e-17
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 8 IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63
++ +LL+ILVCP+ KG L EL+ LA+P+R GVPIML +EAR +D +
Sbjct: 1 MESRLLDILVCPVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAEARSLDAE 56
>2pk7_A Uncharacterized protein; NESG, PLR1, putative
tetraacyldisaccharide-1-P 4-kinase, Q4KFT4, structural
genomics, PSI-2; 2.20A {Pseudomonas fluorescens pf-5}
SCOP: b.171.1.1
Length = 69
Score = 81.6 bits (202), Expect = 4e-17
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 8 IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDD 62
+D +LL+IL CP+ KG L L ++ TEL+SK A LAYPIR G+P+ML SEAR +
Sbjct: 1 MDTKLLDILACPICKGPLKLSADKTELISKGAGLAYPIRDGIPVMLESEARTLTT 55
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics,
PSI-2, protein structure initiative; NMR
{Corynebacterium glutamicum} SCOP: b.171.1.1
Length = 67
Score = 80.8 bits (200), Expect = 6e-17
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 8 IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63
+DPQLLE+L CP KG L + L++++ +LAY I G+P++L+ EA +
Sbjct: 3 LDPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDEATEWTPN 58
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium; NMR {Neisseria meningitidis Z2491}
Length = 68
Score = 80.8 bits (200), Expect = 6e-17
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 8 IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63
++ + L+ILVCP+TKG L + EL S++A LAYPI+ G+P ML +EAR + ++
Sbjct: 1 MEKKFLDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPYMLENEARPLSEE 56
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all
beta, structural genomics, protein structure
initiative; NMR {Streptomyces coelicolor}
Length = 56
Score = 76.9 bits (190), Expect = 9e-16
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 8 IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVD 61
++ LLEIL CP L + LAYP+R G+P++LV EAR+ +
Sbjct: 3 LEAGLLEILACPACHAPLEERDAELICTGQDCGLAYPVRDGIPVLLVDEARRPE 56
>2k5r_A Uncharacterized protein XF2673; solution structure, structural
genomics, PSI-2, protein structure initiative; NMR
{Xylella fastidiosa TEMECULA1}
Length = 97
Score = 64.7 bits (157), Expect = 4e-12
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 27/82 (32%)
Query: 8 IDPQLLEILVCPLTKGNLTLISEGT---------------------------ELLSKKAS 40
+D +LL +L P T+ L+L+ L+++
Sbjct: 1 MDRKLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRK 60
Query: 41 LAYPIRSGVPIMLVSEARQVDD 62
+ I +P++L EA
Sbjct: 61 QVFRIEDSIPVLLPEEAIATIQ 82
>2j6a_A Protein TRM112; translation termination, methyltransferase,
transferase, ERF1, nuclear protein, protein methylation;
1.7A {Saccharomyces cerevisiae}
Length = 141
Score = 26.7 bits (59), Expect = 1.3
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 26 TLISEGTELLSKKASLAYPIRSGVPIMLVSE 56
T I+EG E+ + Y I++G+P +L+
Sbjct: 103 TSIAEG-EMKCRNCGHIYYIKNGIPNLLLPP 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 25.7 bits (56), Expect = 2.7
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 40/88 (45%)
Query: 1 MRETIFNIDPQLLE-I----------LVCPLTK------------GNLTL-ISEGTELLS 36
+R +I ++++ I T G LT +GT
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT---- 523
Query: 37 KKASLAYPIRSGVPIMLVSE-ARQVDDQ 63
GV +++ DD
Sbjct: 524 -----------GVRVIVAGTLDINPDDD 540
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA
CPG methylation, cell cycle, developmental protein, DNA
damage; HET: 5CM; 1.41A {Mus musculus} PDB: 2zo0_B*
2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A*
2zkg_A 3dwh_A 3bi7_A 3clz_A*
Length = 212
Score = 24.9 bits (54), Expect = 4.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 20 LTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLV 54
LT N L +++K + A R G P+ +V
Sbjct: 90 LTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVV 124
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.137 0.375
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 461,333
Number of extensions: 13871
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 11
Length of query: 64
Length of database: 5,693,230
Length adjustment: 35
Effective length of query: 29
Effective length of database: 4,844,690
Effective search space: 140496010
Effective search space used: 140496010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)