HHsearch alignment for GI: 254780740 and conserved domain: smart00464
>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=98.74 E-value=1.7e-08 Score=73.14 Aligned_cols=90 Identities=24% Similarity=0.308 Sum_probs=76.3
Q ss_pred CCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCHHHEEEEEEEECCCCCCCCCE
Q ss_conf 15533308735788851234318389999999999709-93266201234334466435211001324210134666624
Q gi|254780740|r 17 LLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGD-RLIGLVQPAISGFLANSDNGLSQIGCIGRITSFVETDDGHY 95 (221)
Q Consensus 17 ~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~-~~igiv~~~~~~~~~~~~~~l~~vGt~a~I~~~~~~~dG~~ 95 (221)
T Consensus 1 ~~~~lpi~~~~lfpg~~~~i~v~~~~~v~ai~e~~~~~qp~v~~~l~~d~~~~~-------------------------- 54 (92)
T smart00464 1 TLPLLPIRRRPLFPGFVLPIPVKRPKSVAAIKEALRRSQPYVIVFLLQDDPTET-------------------------- 54 (92)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--------------------------
T ss_conf 975212567766887557788388889999999998169825688853689998--------------------------
Q ss_pred EEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHH
Q ss_conf 89875421111010002454068999952222254102456788865788998865103201357776305357999999
Q gi|254780740|r 96 IMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDADWESIEEASNEILVNSLA 175 (221)
Q Consensus 96 ~i~v~G~~R~kI~~~~~~~~py~~a~v~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~l~d~iA 175 (221)
T Consensus 55 -----------------------------------------------------------------------~~~~s~~~~ 63 (92)
T smart00464 55 -----------------------------------------------------------------------PEPLSDTIA 63 (92)
T ss_pred -----------------------------------------------------------------------CCCCCHHHH
T ss_conf -----------------------------------------------------------------------864410066
Q ss_pred HHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 8679998999998536898999999999
Q gi|254780740|r 176 MLSPFSEEEKQALLEAPDFRARAQTLIA 203 (221)
Q Consensus 176 ~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~ 203 (221)
T Consensus 64 ~~~~~~~~~~q~lL~~~~~~~R~~~~i~ 91 (92)
T smart00464 64 ALMPLELHEKQELLELEGTNKRLEKVIK 91 (92)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 7616889888899986160177888742