Query gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 221 No_of_seqs 129 out of 2186 Neff 8.3 Searched_HMMs 33803 Date Wed Jun 1 14:42:29 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780740.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1zbo_A Hypothetical protein B 100.0 4.1E-34 1.2E-38 233.6 17.9 199 16-216 2-209 (210) 2 >2ane_A ATP-dependent protease 99.9 1.3E-26 4E-31 186.4 11.0 124 1-125 1-124 (125) 3 >1k8k_B ARP2, actin-like prote 26.5 14 0.00041 16.8 -0.3 22 85-108 18-39 (43) 4 >1xs0_A Inhibitor of vertebrat 22.4 46 0.0014 13.5 2.8 51 38-88 10-63 (136) 5 >2fxu_A Alpha-actin-1, actin, 21.5 19 0.00056 15.9 -0.4 22 85-108 18-39 (43) 6 >1upt_B Golgi autoantigen, gol 20.7 50 0.0015 13.3 3.0 27 167-193 23-49 (60) 7 >1x9p_A Penton protein; jellyr 17.2 43 0.0013 13.7 0.6 95 19-118 115-211 (228) 8 >2qma_A Diaminobutyrate-pyruva 12.6 80 0.0024 12.0 2.4 26 29-54 5-30 (124) 9 >1zfj_A Inosine monophosphate 12.4 70 0.0021 12.3 0.7 25 54-78 37-61 (63) 10 >2yzs_A Putative uncharacteriz 10.5 93 0.0028 11.6 1.2 49 4-60 16-64 (79) No 1 >>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.60A {Bordetella parapertussis 12822} (A:) Probab=100.00 E-value=4.1e-34 Score=233.58 Aligned_cols=199 Identities=17% Similarity=0.156 Sum_probs=162.7 Q ss_pred CCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEE--CCCCCCCCCCCCCHHHEEEEEEEECCCCCCCC Q ss_conf 3155333087357888512343183899999999997099326620--12343344664352110013242101346666 Q gi|254780740|r 16 CLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQ--PAISGFLANSDNGLSQIGCIGRITSFVETDDG 93 (221) Q Consensus 16 ~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~--~~~~~~~~~~~~~l~~vGt~a~I~~~~~~~dG 93 (221) .+||+||+ +.|+|||+.+||+||||||++|+++|+++++.||++. +.+...+.++.+++|+|||+|+|.++.+.+|| T Consensus 2 ~~lPilpl-~~vlfPg~~~~l~i~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~I~~~~~~~dg 80 (210) T 1zbo_A 2 AEIPLFPL-SNALFPAGVLRLRVFEIRYLDXVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTXARIDHWEAPXPA 80 (210) T ss_dssp CEEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTT T ss_pred CCCCEEEC-CCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC T ss_conf 84787616-86567995256776856899999999853998641010147644456665441002355665201346663 Q ss_pred CEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCHH--HHHH-HHCCHH Q ss_conf 2489875421111010002454068999952222254--1024567888657889988651032013--5777-630535 Q gi|254780740|r 94 HYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLA--GNDNDGVDRVALLEVFRNYLTVNNLDAD--WESI-EEASNE 168 (221) Q Consensus 94 ~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~~~d~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~i-~~~~~~ 168 (221) ++.|.++|++||||.++.+.+++|+.|.|++..++.. ...+.......+.+.++++....+.... ...+ ...+++ T Consensus 81 ~~~i~~~G~~R~~i~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210) T 1zbo_A 81 LLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIXPXAAPFRLDDCG 160 (210) T ss_dssp CEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBCSCCCTTCHH T ss_pred CEEEEEEECCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHH T ss_conf 24676521000234245622675256777742666765441889999999999999999845774033443243114499 Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH--HHHHHHH Q ss_conf 79999998679998999998536898999999999999999--9974232 Q gi|254780740|r 169 ILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMKIVL--ARAYTHC 216 (221) Q Consensus 169 ~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le~el--~~~~~~~ 216 (221) .++|++|++++++.++||+|||+ |+.+|+.+++++|+.|+ .+.+++| T Consensus 161 ~l~d~~a~~l~l~~~~kq~lLe~-d~~~Rl~~l~~~l~~e~~~~~l~~~I 209 (210) T 1zbo_A 161 WVADRWAEXLSLPPADKARLLLL-PPLDRLREIDAVLAADGHALEHHHHH 209 (210) T ss_dssp HHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHHHHHHHHC----------- T ss_pred HHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99999998389999999998789-99999999999999865566303357 No 2 >>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} (A:) Probab=99.94 E-value=1.3e-26 Score=186.37 Aligned_cols=124 Identities=17% Similarity=0.187 Sum_probs=114.7 Q ss_pred CCCCCHHHCCHHHCCCCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHEEE Q ss_conf 98885100796678431553330873578885123431838999999999970993266201234334466435211001 Q gi|254780740|r 1 MKIGNTIYKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGC 80 (221) Q Consensus 1 ~~~~~~~~~~~~~lp~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~~~~~~~~~~~~l~~vGt 80 (221) |......+....++|..||+|||++.|+|||+.+||+|++++|++|+++|+++++.++++++++...+.++.+++|+||| T Consensus 1 M~~~~~~~~~~~~~~~~LPi~pl~~~vlfPg~~~pl~i~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~vGt 80 (125) T 2ane_A 1 MHHHHHHMNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGT 80 (125) T ss_dssp --------------CEEEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTTSEEEEEEBCTTCCSSCCGGGBCSEEE T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCEEECCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEE T ss_conf 96433444866466522739992892527990387898978999999998743564034303455556765333010247 Q ss_pred EEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEEC Q ss_conf 324210134666624898754211110100024540689999522 Q gi|254780740|r 81 IGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPF 125 (221) Q Consensus 81 ~a~I~~~~~~~dG~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~ 125 (221) +|+|.++.+++||++.++++|++||||.+ +.+.+||+.|+|+.+ T Consensus 81 ~~~I~~~~~~~dg~~~v~~~g~~R~ki~~-~~~~~p~~~a~v~~l 124 (125) T 2ane_A 81 VASILQMLKLPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYL 124 (125) T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEEEEE-EEECSSSEEEEEEEC T ss_pred EEEEEEEEEECCCCEEEEEEEEEEEEEEE-EECCCCCEEEEEEEC T ss_conf 88999998604882899999888899999-986899889999974 No 3 >>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} (B:224-266) Probab=26.46 E-value=14 Score=16.75 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=16.0 Q ss_pred ECCCCCCCCCEEEEEEEEEEEEEC Q ss_conf 101346666248987542111101 Q gi|254780740|r 85 TSFVETDDGHYIMTVIGVCRFRLL 108 (221) Q Consensus 85 ~~~~~~~dG~~~i~v~G~~R~kI~ 108 (221) .+.-++|||+ ++..|-+|||-- T Consensus 18 ~~~YeLPDG~--~I~ig~ERFrcp 39 (43) T 1k8k_B 18 VESYTLPDGR--IIKVGGERFEAP 39 (43) T ss_dssp CEEEECTTSC--EEEECTHHHHTG T ss_pred CEEEECCCCC--EEEECHHHHHCH T ss_conf 2467889971--999895774175 No 4 >>1xs0_A Inhibitor of vertebrate lysozyme; alpha beta fold, dimer, hydrolase inhibitor; 1.58A {Escherichia coli K12} (A:) Probab=22.43 E-value=46 Score=13.47 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=32.7 Q ss_pred ECCHHHHHHHHHHHHCCCCEEEEEC---CCCCCCCCCCCCHHHEEEEEEEECCC Q ss_conf 1838999999999970993266201---23433446643521100132421013 Q gi|254780740|r 38 VFERRYIAMFDSVLAGDRLIGLVQP---AISGFLANSDNGLSQIGCIGRITSFV 88 (221) Q Consensus 38 Ife~ry~~~i~~~l~~~~~igiv~~---~~~~~~~~~~~~l~~vGt~a~I~~~~ 88 (221) ...|.|+++.+.++++.++=+.|.. ..+........+-|-||++|+=+.|- T Consensus 10 ~~dp~ykaaw~~mvk~~~LP~Wv~~gGtssP~~~V~~~G~~Ylvg~~CKpHdC~ 63 (136) T 1xs0_A 10 AKGETTKAAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCG 63 (136) T ss_dssp HHCTTTHHHHHHHHTTSCCCHHHHHTCEEEEEEEEEEETEEEEEEEEECTTCTT T ss_pred HCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHEEEECCEEEEEECCCCCCCCC T ss_conf 009778999999981787748998289989612055789068986564676788 No 5 >>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} (A:220-262) Probab=21.48 E-value=19 Score=15.88 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=15.3 Q ss_pred ECCCCCCCCCEEEEEEEEEEEEEC Q ss_conf 101346666248987542111101 Q gi|254780740|r 85 TSFVETDDGHYIMTVIGVCRFRLL 108 (221) Q Consensus 85 ~~~~~~~dG~~~i~v~G~~R~kI~ 108 (221) .+.-++|||+ ++.-|-+||+-- T Consensus 18 ~~~Y~LPDG~--~I~ig~ErFrcP 39 (43) T 2fxu_A 18 EKSYELPDGQ--VITIGNERFRCP 39 (43) T ss_dssp CEEEECTTSC--EEEESTHHHHHH T ss_pred CEEEECCCCC--EEEECHHHHHCC T ss_conf 3148999986--899865884072 No 6 >>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} (B:) Probab=20.73 E-value=50 Score=13.25 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=22.1 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCC Q ss_conf 357999999867999899999853689 Q gi|254780740|r 167 NEILVNSLAMLSPFSEEEKQALLEAPD 193 (221) Q Consensus 167 ~~~l~d~iA~~l~~~~~eKQ~lLE~~~ 193 (221) ...++-.||+.+.|+.++.|.+|+-.+ T Consensus 23 t~tlaKVi~av~kF~~~Q~q~il~kE~ 49 (60) T 1upt_B 23 TKTXAKVITTVLKFPDDQTQKILERED 49 (60) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 468999999999189999999999876 No 7 >>1x9p_A Penton protein; jellyroll domain, anti-parallel beta sheet, insertion domain, virus like particle; HET: C15; 3.30A {Human adenovirus 2} PDB: 1x9t_A* 2bld_A 2c9f_A 2c9g_A 2c6s_A (A:1-87,A:383-523) Probab=17.18 E-value=43 Score=13.66 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=51.9 Q ss_pred CEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHEEEEEEEECCCCCCCCC--EE Q ss_conf 5333087357888512343183899999999997099326620123433446643521100132421013466662--48 Q gi|254780740|r 19 PIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGCIGRITSFVETDDGH--YI 96 (221) Q Consensus 19 Pi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~~~~~~~~~~~~l~~vGt~a~I~~~~~~~dG~--~~ 96 (221) -.+|.-|+=+||-.--..+-+..-|-++++.|-+....|-= .+.+ +-...++--.+-.+++=.-. -.+-|+ ++ T Consensus 115 ~~~PVVg~~lfP~~~k~~yn~~avY~Qli~~~tn~T~vFNR-FPeN---~IL~qpP~~~~~~vseNvP~-~~dhGtlPl~ 189 (228) T 1x9p_A 115 SNFPVVGAELLPVHSKSFYNDQAVYSQLIRQFTSLTHVFNR-FPEN---QILARPPAPTITTVSENVPA-LTDHGTLPLR 189 (228) T ss_dssp GGCCCCEEEECSEEEEEECCSHHHHGGGTSSSCCCCCTTCS-CSTT---SSSSCCCCCSSEEEEEECCE-EEEEEEEEEC T ss_pred CCCCEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHCC-CCCC---CEECCCCCCCEEECCCCCCC-CCCCCCEECC T ss_conf 66864542331232000335258999999975201577612-8865---10206999840661267662-1356730102 Q ss_pred EEEEEEEEEEECCCCCCCCCEE Q ss_conf 9875421111010002454068 Q gi|254780740|r 97 MTVIGVCRFRLLEEAYQLNSWR 118 (221) Q Consensus 97 i~v~G~~R~kI~~~~~~~~py~ 118 (221) =.+.|++|+-|.+--...-||- T Consensus 190 nsl~GvQRV~iTDdrRR~cPYV 211 (228) T 1x9p_A 190 NSIGGVQRVTITDARRRTCPYV 211 (228) T ss_dssp SEEESEEEEECEETTSSCCTTE T ss_pred CCCCCEEEEEEECCCCCCCCCE T ss_conf 5677625898764775768635 No 8 >>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1; HET: MSE; 1.81A {Vibrio parahaemolyticus rimd 2210633} (A:96-109,A:388-497) Probab=12.56 E-value=80 Score=11.98 Aligned_cols=26 Identities=15% Similarity=0.145 Sum_probs=22.2 Q ss_pred CCCCCCCEEECCHHHHHHHHHHHHCC Q ss_conf 88851234318389999999999709 Q gi|254780740|r 29 LPGSRFSFSVFERRYIAMFDSVLAGD 54 (221) Q Consensus 29 FP~~~~pL~Ife~ry~~~i~~~l~~~ 54 (221) -|..+..||-|...|.+||+.++.-- T Consensus 5 ~~~~~~~~~~G~~G~~~~I~~~i~lA 30 (124) T 2qma_A 5 HPDCIAHLHTGPKALGDXYDHLLAQT 30 (124) T ss_dssp STTBCSSSCCCHHHHHHHHHHHHHHH T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHH T ss_conf 99813758891237999999999999 No 9 >>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} (A:97-159) Probab=12.39 E-value=70 Score=12.32 Aligned_cols=25 Identities=16% Similarity=0.424 Sum_probs=9.7 Q ss_pred CCCEEEEECCCCCCCCCCCCCHHHE Q ss_conf 9932662012343344664352110 Q gi|254780740|r 54 DRLIGLVQPAISGFLANSDNGLSQI 78 (221) Q Consensus 54 ~~~igiv~~~~~~~~~~~~~~l~~v 78 (221) ++++|+++.+|-....+....+.+| T Consensus 37 gklvGIvT~rDi~~~~~~~~~v~ev 61 (63) T 1zfj_A 37 RKLVGIITNRDXRFISDYNAPISEH 61 (63) T ss_dssp CBEEEEEEHHHHHHCSCSSSBTTTS T ss_pred CCEEEEEECCEEEEEECCCCCEEEE T ss_conf 5112366225289887377612331 No 10 >>2yzs_A Putative uncharacterized protein; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; 2.00A {Aquifex aeolicus} (A:1-79) Probab=10.49 E-value=93 Score=11.55 Aligned_cols=49 Identities=6% Similarity=0.125 Sum_probs=32.6 Q ss_pred CCHHHCCHHHCCCCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEE Q ss_conf 851007966784315533308735788851234318389999999999709932662 Q gi|254780740|r 4 GNTIYKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLV 60 (221) Q Consensus 4 ~~~~~~~~~~lp~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv 60 (221) +|.++-+.++-...+|+--+..+|+|.+..+.- +++..|++.+-.+... T Consensus 16 ~~~l~v~~~~~~~~iPl~~i~~Ivi~g~v~ist--------~~l~~l~~~gI~v~f~ 64 (79) T 2yzs_A 16 ENTLRFENAEVKKDIPVEDVEEIFVFAELSLNT--------KLLNFLASKGIPLHFF 64 (79) T ss_dssp TTEEEEECSSCEEEECGGGCSEEEECSCEEEEH--------HHHHHHHHHTCCEEEE T ss_pred CCEEEEEECCEEEEECHHHCCEEEEECCCCCCH--------HHHHHHHHCCCEEEEE T ss_conf 899999978989997358868899958970679--------9999999879979999 Done!