Query         gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 221
No_of_seqs    129 out of 2186
Neff          8.3 
Searched_HMMs 33803
Date          Wed Jun  1 14:42:29 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780740.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1zbo_A Hypothetical protein B 100.0 4.1E-34 1.2E-38  233.6  17.9  199   16-216     2-209 (210)
  2 >2ane_A ATP-dependent protease  99.9 1.3E-26   4E-31  186.4  11.0  124    1-125     1-124 (125)
  3 >1k8k_B ARP2, actin-like prote  26.5      14 0.00041   16.8  -0.3   22   85-108    18-39  (43)
  4 >1xs0_A Inhibitor of vertebrat  22.4      46  0.0014   13.5   2.8   51   38-88     10-63  (136)
  5 >2fxu_A Alpha-actin-1, actin,   21.5      19 0.00056   15.9  -0.4   22   85-108    18-39  (43)
  6 >1upt_B Golgi autoantigen, gol  20.7      50  0.0015   13.3   3.0   27  167-193    23-49  (60)
  7 >1x9p_A Penton protein; jellyr  17.2      43  0.0013   13.7   0.6   95   19-118   115-211 (228)
  8 >2qma_A Diaminobutyrate-pyruva  12.6      80  0.0024   12.0   2.4   26   29-54      5-30  (124)
  9 >1zfj_A Inosine monophosphate   12.4      70  0.0021   12.3   0.7   25   54-78     37-61  (63)
 10 >2yzs_A Putative uncharacteriz  10.5      93  0.0028   11.6   1.2   49    4-60     16-64  (79)

No 1  
>>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.60A {Bordetella parapertussis 12822} (A:)
Probab=100.00  E-value=4.1e-34  Score=233.58  Aligned_cols=199  Identities=17%  Similarity=0.156  Sum_probs=162.7

Q ss_pred             CCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEE--CCCCCCCCCCCCCHHHEEEEEEEECCCCCCCC
Q ss_conf             3155333087357888512343183899999999997099326620--12343344664352110013242101346666
Q gi|254780740|r   16 CLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQ--PAISGFLANSDNGLSQIGCIGRITSFVETDDG   93 (221)
Q Consensus        16 ~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~--~~~~~~~~~~~~~l~~vGt~a~I~~~~~~~dG   93 (221)
                      .+||+||+ +.|+|||+.+||+||||||++|+++|+++++.||++.  +.+...+.++.+++|+|||+|+|.++.+.+||
T Consensus         2 ~~lPilpl-~~vlfPg~~~~l~i~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~I~~~~~~~dg   80 (210)
T 1zbo_A            2 AEIPLFPL-SNALFPAGVLRLRVFEIRYLDXVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTXARIDHWEAPXPA   80 (210)
T ss_dssp             CEEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTT
T ss_pred             CCCCEEEC-CCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC
T ss_conf             84787616-86567995256776856899999999853998641010147644456665441002355665201346663


Q ss_pred             CEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCHH--HHHH-HHCCHH
Q ss_conf             2489875421111010002454068999952222254--1024567888657889988651032013--5777-630535
Q gi|254780740|r   94 HYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLA--GNDNDGVDRVALLEVFRNYLTVNNLDAD--WESI-EEASNE  168 (221)
Q Consensus        94 ~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~~~d~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~i-~~~~~~  168 (221)
                      ++.|.++|++||||.++.+.+++|+.|.|++..++..  ...+.......+.+.++++....+....  ...+ ...+++
T Consensus        81 ~~~i~~~G~~R~~i~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (210)
T 1zbo_A           81 LLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIXPXAAPFRLDDCG  160 (210)
T ss_dssp             CEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBCSCCCTTCHH
T ss_pred             CEEEEEEECCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHH
T ss_conf             24676521000234245622675256777742666765441889999999999999999845774033443243114499


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_conf             79999998679998999998536898999999999999999--9974232
Q gi|254780740|r  169 ILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMKIVL--ARAYTHC  216 (221)
Q Consensus       169 ~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le~el--~~~~~~~  216 (221)
                      .++|++|++++++.++||+|||+ |+.+|+.+++++|+.|+  .+.+++|
T Consensus       161 ~l~d~~a~~l~l~~~~kq~lLe~-d~~~Rl~~l~~~l~~e~~~~~l~~~I  209 (210)
T 1zbo_A          161 WVADRWAEXLSLPPADKARLLLL-PPLDRLREIDAVLAADGHALEHHHHH  209 (210)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999998389999999998789-99999999999999865566303357


No 2  
>>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} (A:)
Probab=99.94  E-value=1.3e-26  Score=186.37  Aligned_cols=124  Identities=17%  Similarity=0.187  Sum_probs=114.7

Q ss_pred             CCCCCHHHCCHHHCCCCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHEEE
Q ss_conf             98885100796678431553330873578885123431838999999999970993266201234334466435211001
Q gi|254780740|r    1 MKIGNTIYKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGC   80 (221)
Q Consensus         1 ~~~~~~~~~~~~~lp~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~~~~~~~~~~~~l~~vGt   80 (221)
                      |......+....++|..||+|||++.|+|||+.+||+|++++|++|+++|+++++.++++++++...+.++.+++|+|||
T Consensus         1 M~~~~~~~~~~~~~~~~LPi~pl~~~vlfPg~~~pl~i~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~vGt   80 (125)
T 2ane_A            1 MHHHHHHMNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGT   80 (125)
T ss_dssp             --------------CEEEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTTSEEEEEEBCTTCCSSCCGGGBCSEEE
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCEEECCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEE
T ss_conf             96433444866466522739992892527990387898978999999998743564034303455556765333010247


Q ss_pred             EEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEEC
Q ss_conf             324210134666624898754211110100024540689999522
Q gi|254780740|r   81 IGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPF  125 (221)
Q Consensus        81 ~a~I~~~~~~~dG~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~  125 (221)
                      +|+|.++.+++||++.++++|++||||.+ +.+.+||+.|+|+.+
T Consensus        81 ~~~I~~~~~~~dg~~~v~~~g~~R~ki~~-~~~~~p~~~a~v~~l  124 (125)
T 2ane_A           81 VASILQMLKLPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYL  124 (125)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEEEEE-EEECSSSEEEEEEEC
T ss_pred             EEEEEEEEEECCCCEEEEEEEEEEEEEEE-EECCCCCEEEEEEEC
T ss_conf             88999998604882899999888899999-986899889999974


No 3  
>>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} (B:224-266)
Probab=26.46  E-value=14  Score=16.75  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=16.0

Q ss_pred             ECCCCCCCCCEEEEEEEEEEEEEC
Q ss_conf             101346666248987542111101
Q gi|254780740|r   85 TSFVETDDGHYIMTVIGVCRFRLL  108 (221)
Q Consensus        85 ~~~~~~~dG~~~i~v~G~~R~kI~  108 (221)
                      .+.-++|||+  ++..|-+|||--
T Consensus        18 ~~~YeLPDG~--~I~ig~ERFrcp   39 (43)
T 1k8k_B           18 VESYTLPDGR--IIKVGGERFEAP   39 (43)
T ss_dssp             CEEEECTTSC--EEEECTHHHHTG
T ss_pred             CEEEECCCCC--EEEECHHHHHCH
T ss_conf             2467889971--999895774175


No 4  
>>1xs0_A Inhibitor of vertebrate lysozyme; alpha beta fold, dimer, hydrolase inhibitor; 1.58A {Escherichia coli K12} (A:)
Probab=22.43  E-value=46  Score=13.47  Aligned_cols=51  Identities=12%  Similarity=0.042  Sum_probs=32.7

Q ss_pred             ECCHHHHHHHHHHHHCCCCEEEEEC---CCCCCCCCCCCCHHHEEEEEEEECCC
Q ss_conf             1838999999999970993266201---23433446643521100132421013
Q gi|254780740|r   38 VFERRYIAMFDSVLAGDRLIGLVQP---AISGFLANSDNGLSQIGCIGRITSFV   88 (221)
Q Consensus        38 Ife~ry~~~i~~~l~~~~~igiv~~---~~~~~~~~~~~~l~~vGt~a~I~~~~   88 (221)
                      ...|.|+++.+.++++.++=+.|..   ..+........+-|-||++|+=+.|-
T Consensus        10 ~~dp~ykaaw~~mvk~~~LP~Wv~~gGtssP~~~V~~~G~~Ylvg~~CKpHdC~   63 (136)
T 1xs0_A           10 AKGETTKAAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCG   63 (136)
T ss_dssp             HHCTTTHHHHHHHHTTSCCCHHHHHTCEEEEEEEEEEETEEEEEEEEECTTCTT
T ss_pred             HCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHEEEECCEEEEEECCCCCCCCC
T ss_conf             009778999999981787748998289989612055789068986564676788


No 5  
>>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} (A:220-262)
Probab=21.48  E-value=19  Score=15.88  Aligned_cols=22  Identities=36%  Similarity=0.443  Sum_probs=15.3

Q ss_pred             ECCCCCCCCCEEEEEEEEEEEEEC
Q ss_conf             101346666248987542111101
Q gi|254780740|r   85 TSFVETDDGHYIMTVIGVCRFRLL  108 (221)
Q Consensus        85 ~~~~~~~dG~~~i~v~G~~R~kI~  108 (221)
                      .+.-++|||+  ++.-|-+||+--
T Consensus        18 ~~~Y~LPDG~--~I~ig~ErFrcP   39 (43)
T 2fxu_A           18 EKSYELPDGQ--VITIGNERFRCP   39 (43)
T ss_dssp             CEEEECTTSC--EEEESTHHHHHH
T ss_pred             CEEEECCCCC--EEEECHHHHHCC
T ss_conf             3148999986--899865884072


No 6  
>>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} (B:)
Probab=20.73  E-value=50  Score=13.25  Aligned_cols=27  Identities=19%  Similarity=0.418  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf             357999999867999899999853689
Q gi|254780740|r  167 NEILVNSLAMLSPFSEEEKQALLEAPD  193 (221)
Q Consensus       167 ~~~l~d~iA~~l~~~~~eKQ~lLE~~~  193 (221)
                      ...++-.||+.+.|+.++.|.+|+-.+
T Consensus        23 t~tlaKVi~av~kF~~~Q~q~il~kE~   49 (60)
T 1upt_B           23 TKTXAKVITTVLKFPDDQTQKILERED   49 (60)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             468999999999189999999999876


No 7  
>>1x9p_A Penton protein; jellyroll domain, anti-parallel beta sheet, insertion domain, virus like particle; HET: C15; 3.30A {Human adenovirus 2} PDB: 1x9t_A* 2bld_A 2c9f_A 2c9g_A 2c6s_A (A:1-87,A:383-523)
Probab=17.18  E-value=43  Score=13.66  Aligned_cols=95  Identities=18%  Similarity=0.182  Sum_probs=51.9

Q ss_pred             CEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHEEEEEEEECCCCCCCCC--EE
Q ss_conf             5333087357888512343183899999999997099326620123433446643521100132421013466662--48
Q gi|254780740|r   19 PIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGCIGRITSFVETDDGH--YI   96 (221)
Q Consensus        19 Pi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~~~~~~~~~~~~l~~vGt~a~I~~~~~~~dG~--~~   96 (221)
                      -.+|.-|+=+||-.--..+-+..-|-++++.|-+....|-= .+.+   +-...++--.+-.+++=.-. -.+-|+  ++
T Consensus       115 ~~~PVVg~~lfP~~~k~~yn~~avY~Qli~~~tn~T~vFNR-FPeN---~IL~qpP~~~~~~vseNvP~-~~dhGtlPl~  189 (228)
T 1x9p_A          115 SNFPVVGAELLPVHSKSFYNDQAVYSQLIRQFTSLTHVFNR-FPEN---QILARPPAPTITTVSENVPA-LTDHGTLPLR  189 (228)
T ss_dssp             GGCCCCEEEECSEEEEEECCSHHHHGGGTSSSCCCCCTTCS-CSTT---SSSSCCCCCSSEEEEEECCE-EEEEEEEEEC
T ss_pred             CCCCEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHCC-CCCC---CEECCCCCCCEEECCCCCCC-CCCCCCEECC
T ss_conf             66864542331232000335258999999975201577612-8865---10206999840661267662-1356730102


Q ss_pred             EEEEEEEEEEECCCCCCCCCEE
Q ss_conf             9875421111010002454068
Q gi|254780740|r   97 MTVIGVCRFRLLEEAYQLNSWR  118 (221)
Q Consensus        97 i~v~G~~R~kI~~~~~~~~py~  118 (221)
                      =.+.|++|+-|.+--...-||-
T Consensus       190 nsl~GvQRV~iTDdrRR~cPYV  211 (228)
T 1x9p_A          190 NSIGGVQRVTITDARRRTCPYV  211 (228)
T ss_dssp             SEEESEEEEECEETTSSCCTTE
T ss_pred             CCCCCEEEEEEECCCCCCCCCE
T ss_conf             5677625898764775768635


No 8  
>>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1; HET: MSE; 1.81A {Vibrio parahaemolyticus rimd 2210633} (A:96-109,A:388-497)
Probab=12.56  E-value=80  Score=11.98  Aligned_cols=26  Identities=15%  Similarity=0.145  Sum_probs=22.2

Q ss_pred             CCCCCCCEEECCHHHHHHHHHHHHCC
Q ss_conf             88851234318389999999999709
Q gi|254780740|r   29 LPGSRFSFSVFERRYIAMFDSVLAGD   54 (221)
Q Consensus        29 FP~~~~pL~Ife~ry~~~i~~~l~~~   54 (221)
                      -|..+..||-|...|.+||+.++.--
T Consensus         5 ~~~~~~~~~~G~~G~~~~I~~~i~lA   30 (124)
T 2qma_A            5 HPDCIAHLHTGPKALGDXYDHLLAQT   30 (124)
T ss_dssp             STTBCSSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             99813758891237999999999999


No 9  
>>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} (A:97-159)
Probab=12.39  E-value=70  Score=12.32  Aligned_cols=25  Identities=16%  Similarity=0.424  Sum_probs=9.7

Q ss_pred             CCCEEEEECCCCCCCCCCCCCHHHE
Q ss_conf             9932662012343344664352110
Q gi|254780740|r   54 DRLIGLVQPAISGFLANSDNGLSQI   78 (221)
Q Consensus        54 ~~~igiv~~~~~~~~~~~~~~l~~v   78 (221)
                      ++++|+++.+|-....+....+.+|
T Consensus        37 gklvGIvT~rDi~~~~~~~~~v~ev   61 (63)
T 1zfj_A           37 RKLVGIITNRDXRFISDYNAPISEH   61 (63)
T ss_dssp             CBEEEEEEHHHHHHCSCSSSBTTTS
T ss_pred             CCEEEEEECCEEEEEECCCCCEEEE
T ss_conf             5112366225289887377612331


No 10 
>>2yzs_A Putative uncharacterized protein; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; 2.00A {Aquifex aeolicus} (A:1-79)
Probab=10.49  E-value=93  Score=11.55  Aligned_cols=49  Identities=6%  Similarity=0.125  Sum_probs=32.6

Q ss_pred             CCHHHCCHHHCCCCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             851007966784315533308735788851234318389999999999709932662
Q gi|254780740|r    4 GNTIYKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLV   60 (221)
Q Consensus         4 ~~~~~~~~~~lp~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv   60 (221)
                      +|.++-+.++-...+|+--+..+|+|.+..+.-        +++..|++.+-.+...
T Consensus        16 ~~~l~v~~~~~~~~iPl~~i~~Ivi~g~v~ist--------~~l~~l~~~gI~v~f~   64 (79)
T 2yzs_A           16 ENTLRFENAEVKKDIPVEDVEEIFVFAELSLNT--------KLLNFLASKGIPLHFF   64 (79)
T ss_dssp             TTEEEEECSSCEEEECGGGCSEEEECSCEEEEH--------HHHHHHHHHTCCEEEE
T ss_pred             CCEEEEEECCEEEEECHHHCCEEEEECCCCCCH--------HHHHHHHHCCCEEEEE
T ss_conf             899999978989997358868899958970679--------9999999879979999


Done!