Query         gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 221
No_of_seqs    129 out of 2186
Neff          8.3 
Searched_HMMs 23785
Date          Mon May 30 13:57:45 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780740.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3m65_A ATP-dependent protease  100.0 5.4E-41 2.8E-45  275.8  19.9  199   12-211     3-204 (209)
  2 3ljc_A ATP-dependent protease  100.0 1.1E-40 4.2E-45  273.8  18.4  216    5-221     4-225 (252)
  3 1zbo_A Hypothetical protein BP 100.0 2.4E-37   1E-41  252.9  16.7  199   16-216     2-207 (210)
  4 2ane_A ATP-dependent protease   99.9 1.8E-26 7.5E-31  184.6  11.0  118    7-125     6-124 (125)
  5 3l9k_W Dynein intermediate cha  33.9      20 0.00086   14.7   3.8   33  180-212     1-33  (38)
  6 1upt_B Golgi autoantigen, golg  22.1      33  0.0014   13.4   3.0   27  168-194    24-50  (60)
  7 3nbk_A Phosphopantetheine aden  16.2      36  0.0015   13.2   0.8   34   26-62     23-57  (177)
  8 1x9p_A Penton protein; jellyro  14.4      40  0.0017   12.9   0.6   10   42-51    131-140 (523)
  9 1u9c_A APC35852; structural ge  12.7      56  0.0023   12.0   3.1   38   25-62     91-130 (224)
 10 2p1h_A APAF-1, apoptotic prote  10.9      64  0.0027   11.6   6.3   44  162-205    19-62  (94)

No 1  
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, cytoplasm, hydrolase, nucleotide-B protease, serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=100.00  E-value=5.4e-41  Score=275.81  Aligned_cols=199  Identities=17%  Similarity=0.303  Sum_probs=170.8

Q ss_pred             HHCCCCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHEEEEEEEECCCCCC
Q ss_conf             67843155333087357888512343183899999999997099326620123433446643521100132421013466
Q gi|254780740|r   12 EDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGCIGRITSFVETD   91 (221)
Q Consensus        12 ~~lp~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~~~~~~~~~~~~l~~vGt~a~I~~~~~~~   91 (221)
                      +++|++||+|||+|+|+|||+.+|||||||||++|+++|+++++.||++++++...+.+..+++|+|||+|+|+++.++|
T Consensus         3 ~~~p~~lPv~pL~~~VlfPg~~~pL~I~e~r~~~~i~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~vG~l~~I~~~~~~~   82 (209)
T 3m65_A            3 EELKRSIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHDHMIFLATQQDISIDEPGEDEIFTVGTYTKIKQMLKLP   82 (209)
T ss_dssp             -CEEEEEEEEEESSCCCCTTCEEEEEECSHHHHHHHHHHTTTTSEEEEEEBSSTTCSSCCGGGBCSEEEEEEEEEEEECT
T ss_pred             CCCCCCEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHEEEEEEEEEEEEECC
T ss_conf             65777667998689312899656578488899999999984099524552022235688632012144278887887449


Q ss_pred             CCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH-H-HHHH-HHCCHH
Q ss_conf             662489875421111010002454068999952222254102456788865788998865103201-3-5777-630535
Q gi|254780740|r   92 DGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDA-D-WESI-EEASNE  168 (221)
Q Consensus        92 dG~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~i-~~~~~~  168 (221)
                      ||++.|+++|.+||++.+ ....+||..|.++...++....++..+....+.+.++++........ + ...+ +..+++
T Consensus        83 dg~~~i~~~G~~R~~i~~-~~~~~~~~~a~v~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (209)
T 3m65_A           83 NGTIRVLVEGLKRAHIVK-YNEHEDYTSVDIQLIHEDDSKDTEDEALMRTLLDHFDQYIKISKKISAETYAAVTDIEEPG  161 (209)
T ss_dssp             TSCEEEEEEEEEEEEEEE-EEECSSSEEEEEEECCCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred             CCCEEEEEEEEEEEEECC-CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH
T ss_conf             995899999997565203-3444445414798722556674777889999999999999863110177787777417889


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             7999999867999899999853689899999999999999999
Q gi|254780740|r  169 ILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMKIVLAR  211 (221)
Q Consensus       169 ~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le~el~~  211 (221)
                      .++|++|++++++.++||+|||+.|+.+|+++++++|+.|+.-
T Consensus       162 ~lad~~a~~l~~~~~ekQ~lLe~~d~~~Rl~~~l~~L~~e~~~  204 (209)
T 3m65_A          162 RMADIVASHLPLKLKDKQDILETADVKDRLNKVIDFINNEKEV  204 (209)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999999808999999999984899999999999999999999


No 2  
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=100.00  E-value=1.1e-40  Score=273.77  Aligned_cols=216  Identities=20%  Similarity=0.244  Sum_probs=179.8

Q ss_pred             CHHHCCH-HHCCCCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHEEEEEE
Q ss_conf             5100796-678431553330873578885123431838999999999970993266201234334466435211001324
Q gi|254780740|r    5 NTIYKNR-EDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGCIGR   83 (221)
Q Consensus         5 ~~~~~~~-~~lp~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~~~~~~~~~~~~l~~vGt~a~   83 (221)
                      |-+.|++ .+=+-.||+|||+|+|+|||+.+||+||||||++|+++|+++++.||++++++...+.++.+++|+|||+|+
T Consensus         4 ~~~~mn~~~~~~~~LPv~PL~~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~~~i~lv~~~~~~~e~~~~~~l~~vGtl~~   83 (252)
T 3ljc_A            4 HHHHMNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVAS   83 (252)
T ss_dssp             ----------CCCCCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTTTEEEEEEBCSSCCSSCCSSSBCSEEEEEE
T ss_pred             CCCCCCCCCCCCCEEEEEEECCEEECCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEE
T ss_conf             33567977677623779981891117992558886989999999999834995699972466667887666535456999


Q ss_pred             EECCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH-H-HHH
Q ss_conf             21013466662489875421111010002454068999952222254102456788865788998865103201-3-577
Q gi|254780740|r   84 ITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDA-D-WES  161 (221)
Q Consensus        84 I~~~~~~~dG~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~  161 (221)
                      |.++.++|||++.|+++|.+||+|.+ +....||..|.++...++.....+..+....+.+.++++........ + ...
T Consensus        84 I~~~~~~~dG~~~i~v~g~~R~~i~~-~~~~~~~~~~~v~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  162 (252)
T 3ljc_A           84 ILQMLKLPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTS  162 (252)
T ss_dssp             ECCCBCCTTSCEEEEEEEEEEEECSE-EEEETTEEEEECCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             EEEEEECCCCCEEEEEEEEEECCCCE-EEECCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             98877548986999997764023210-33202323334301257654435788999999999999998667789999988


Q ss_pred             H-HHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHH--HHHHHHHHHHHCCCC
Q ss_conf             7-63053579999998679998999998536898999999999999--999997423210349
Q gi|254780740|r  162 I-EEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMK--IVLARAYTHCENRLQ  221 (221)
Q Consensus       162 i-~~~~~~~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le--~el~~~~~~~~~~vq  221 (221)
                      + ...+++.++|++|++++++.++||+|||+.|+.+|+++++++|+  .++.+..+++..+|+
T Consensus       163 ~~~~~~~~~l~d~ia~~l~~~~~ekQ~lLe~~d~~~Rl~~l~~~L~~e~e~~~l~~~I~~~v~  225 (252)
T 3ljc_A          163 LNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK  225 (252)
T ss_dssp             TTSCCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             753489999999999747999889986764699999999999999999999999999999999


No 3  
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.60A {Bordetella parapertussis 12822} SCOP: b.122.1.10
Probab=100.00  E-value=2.4e-37  Score=252.86  Aligned_cols=199  Identities=18%  Similarity=0.176  Sum_probs=154.6

Q ss_pred             CCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCCCCCHHHEEEEEEEECCCCCCCC
Q ss_conf             31553330873578885123431838999999999970993266201--2343344664352110013242101346666
Q gi|254780740|r   16 CLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQP--AISGFLANSDNGLSQIGCIGRITSFVETDDG   93 (221)
Q Consensus        16 ~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~--~~~~~~~~~~~~l~~vGt~a~I~~~~~~~dG   93 (221)
                      ..||+||| ++|+|||+.+||+||||||++|+++|+++++.||++..  .+...+.++.+++|+|||+|+|.++.++|||
T Consensus         2 ~elPlfpL-~~VlfP~~~~pL~Ifepry~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vGt~~~I~~~~~~~dg   80 (210)
T 1zbo_A            2 AEIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPA   80 (210)
T ss_dssp             CEEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTT
T ss_pred             CCCCEEEC-CCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC
T ss_conf             83777716-86556995455576857999999999842997157741257532356676652034899998630115799


Q ss_pred             CEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCHH--HHHHHHHHHHHHHHHHHHHCCCCHH--HHH-HHHCCHH
Q ss_conf             2489875421111010002454068999952222254102--4567888657889988651032013--577-7630535
Q gi|254780740|r   94 HYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGND--NDGVDRVALLEVFRNYLTVNNLDAD--WES-IEEASNE  168 (221)
Q Consensus        94 ~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~~~d~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~--~~~-i~~~~~~  168 (221)
                      ++.|+++|++||||.++....++|..|.+.+.+++.....  +.......+.+.++.+.........  +.. .+..++.
T Consensus        81 ~~~i~~~G~~R~ri~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (210)
T 1zbo_A           81 LLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCG  160 (210)
T ss_dssp             CEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBCSCCCTTCHH
T ss_pred             CEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHCCCCHH
T ss_conf             77999750101887678833786389999966788775665999999999999999999724886354531102127889


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             799999986799989999985368989999999999999999974232
Q gi|254780740|r  169 ILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMKIVLARAYTHC  216 (221)
Q Consensus       169 ~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le~el~~~~~~~  216 (221)
                      .++|++|++++++.++||+|||+. ..+|++++..+|+.+....+.+-
T Consensus       161 ~l~d~~a~~l~l~~~~kQ~LLE~d-~~eRL~~l~~~L~~~~~~le~~~  207 (210)
T 1zbo_A          161 WVADRWAEMLSLPPADKARLLLLP-PLDRLREIDAVLAADGHALEHHH  207 (210)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHSC-HHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999980898999999986899-99999999999999767763032


No 4  
>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10
Probab=99.94  E-value=1.8e-26  Score=184.65  Aligned_cols=118  Identities=19%  Similarity=0.193  Sum_probs=106.6

Q ss_pred             HHCCHH-HCCCCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHEEEEEEEE
Q ss_conf             007966-7843155333087357888512343183899999999997099326620123433446643521100132421
Q gi|254780740|r    7 IYKNRE-DLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGCIGRIT   85 (221)
Q Consensus         7 ~~~~~~-~lp~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~~~~~~~~~~~~l~~vGt~a~I~   85 (221)
                      +-|+++ .-+..||+|||+|.|+|||+.+||+|||+||++|+++|+++++.++++.+.+...+.++.+++|++||+|+|.
T Consensus         6 ~~m~~e~~~~~~lPvlPl~~~vlFPg~~~PL~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vG~~a~I~   85 (125)
T 2ane_A            6 HHMNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASIL   85 (125)
T ss_dssp             ---------CEEEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTTSEEEEEEBCTTCCSSCCGGGBCSEEEEEEEE
T ss_pred             CCCCCCCCCCCEEEEEEECCEEECCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHEEEEEEEE
T ss_conf             34386757652370999189265799258789997999999999983898088881246555577633032046899999


Q ss_pred             CCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEEC
Q ss_conf             0134666624898754211110100024540689999522
Q gi|254780740|r   86 SFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPF  125 (221)
Q Consensus        86 ~~~~~~dG~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~  125 (221)
                      ++.+++||+++++++|.+||||.+| .+.+||+.|+|+++
T Consensus        86 ~~~~~~dG~~~v~v~G~~R~kI~~~-~~~~p~~~a~Ve~l  124 (125)
T 2ane_A           86 QMLKLPDGTVKVLVEGLQRARISAL-SDNGEHFSAKAEYL  124 (125)
T ss_dssp             EEEECTTSCEEEEEEEEEEEEEEEE-EECSSSEEEEEEEC
T ss_pred             EEEECCCCCEEEEEEEEEEEEEEEE-ECCCCCEEEEEEEC
T ss_conf             9887699869999999989999999-87899889999975


No 5  
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=33.93  E-value=20  Score=14.75  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             998999998536898999999999999999997
Q gi|254780740|r  180 FSEEEKQALLEAPDFRARAQTLIAIMKIVLARA  212 (221)
Q Consensus       180 ~~~~eKQ~lLE~~~~~~Rl~~l~~~Le~el~~~  212 (221)
                      ++-++||.||-..+-..-+.+-..+++..|.+.
T Consensus         1 LsEEEK~~Il~SedF~~F~drs~Ri~ERAL~E~   33 (38)
T 3l9k_W            1 LSEEQKQMIILSENFQRFVVRAGRVIERALSEN   33 (38)
T ss_dssp             CCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             988999899978999999998789999998102


No 6  
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=22.11  E-value=33  Score=13.43  Aligned_cols=27  Identities=19%  Similarity=0.418  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCCH
Q ss_conf             579999998679998999998536898
Q gi|254780740|r  168 EILVNSLAMLSPFSEEEKQALLEAPDF  194 (221)
Q Consensus       168 ~~l~d~iA~~l~~~~~eKQ~lLE~~~~  194 (221)
                      ..++-.||+.+.|+.++.|.+||-.+.
T Consensus        24 ~tlaKVi~av~kF~~~Q~q~il~kE~~   50 (60)
T 1upt_B           24 KTMAKVITTVLKFPDDQTQKILEREDA   50 (60)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf             789999999990899999999998771


No 7  
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3lcj_A* 1tfu_A
Probab=16.22  E-value=36  Score=13.17  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=24.5

Q ss_pred             CEECCCCCCCEEECCHHHHHHHHHHHHC-CCCEEEEEC
Q ss_conf             3578885123431838999999999970-993266201
Q gi|254780740|r   26 MLLLPGSRFSFSVFERRYIAMFDSVLAG-DRLIGLVQP   62 (221)
Q Consensus        26 ~VlFP~~~~pL~Ife~ry~~~i~~~l~~-~~~igiv~~   62 (221)
                      .-+|||+--|+|.|-   +.+++.|++. |+.+.++..
T Consensus        23 iai~~GsFdPiH~GH---l~i~~~a~~~~D~viv~~~~   57 (177)
T 3nbk_A           23 GAVCPGSFDPVTLGH---VDIFERAAAQFDEVVVAILV   57 (177)
T ss_dssp             EEEEEECCTTCCHHH---HHHHHHHHHHSSEEEEEECC
T ss_pred             EEEECCCCCCCCHHH---HHHHHHHHHHCCEEEEEECC
T ss_conf             999686779887899---99999999869989998345


No 8  
>1x9p_A Penton protein; jellyroll domain, anti-parallel beta sheet, insertion domain, virus like particle; HET: C15; 3.30A {Human adenovirus 2} PDB: 1x9t_A* 2bld_A 2c9f_A 2c9g_A 2c6s_A
Probab=14.36  E-value=40  Score=12.93  Aligned_cols=10  Identities=10%  Similarity=0.351  Sum_probs=4.4

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780740|r   42 RYIAMFDSVL   51 (221)
Q Consensus        42 ry~~~i~~~l   51 (221)
                      .-+.+++++.
T Consensus       131 ~~IDLmNnaI  140 (523)
T 1x9p_A          131 MTIDLMNNAI  140 (523)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             7999888999


No 9  
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, parkinson'S disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=12.68  E-value=56  Score=12.00  Aligned_cols=38  Identities=16%  Similarity=0.210  Sum_probs=27.8

Q ss_pred             CCEECCCCCCCEE--ECCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             7357888512343--1838999999999970993266201
Q gi|254780740|r   25 GMLLLPGSRFSFS--VFERRYIAMFDSVLAGDRLIGLVQP   62 (221)
Q Consensus        25 ~~VlFP~~~~pL~--Ife~ry~~~i~~~l~~~~~igiv~~   62 (221)
                      +.|++||..-|..  -..++-.+++.+..+.++.++.+|.
T Consensus        91 dav~ipGG~g~~~~l~~~~~l~~li~~~~~~~k~iaaICh  130 (224)
T 1u9c_A           91 DAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCH  130 (224)
T ss_dssp             SEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETT
T ss_pred             CEEEECCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             9899589830777521158999999999975997999612


No 10 
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=10.91  E-value=64  Score=11.64  Aligned_cols=44  Identities=14%  Similarity=0.251  Sum_probs=0.0

Q ss_pred             HHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             76305357999999867999899999853689899999999999
Q gi|254780740|r  162 IEEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIM  205 (221)
Q Consensus       162 i~~~~~~~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~L  205 (221)
                      +...++..+.+.+.+.-.++.++.+.|....+..+|..+++.+|
T Consensus        19 v~~l~~~~il~~L~~~~vlt~~~~e~I~~~~t~~~k~~~lL~~L   62 (94)
T 2p1h_A           19 EKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI   62 (94)
T ss_dssp             HHHCCHHHHHHHHHHHTSSCHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             98599999999998879999999999984798299999999987


Done!