Query gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 221 No_of_seqs 129 out of 2186 Neff 8.3 Searched_HMMs 23785 Date Mon May 30 13:57:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780740.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3m65_A ATP-dependent protease 100.0 5.4E-41 2.8E-45 275.8 19.9 199 12-211 3-204 (209) 2 3ljc_A ATP-dependent protease 100.0 1.1E-40 4.2E-45 273.8 18.4 216 5-221 4-225 (252) 3 1zbo_A Hypothetical protein BP 100.0 2.4E-37 1E-41 252.9 16.7 199 16-216 2-207 (210) 4 2ane_A ATP-dependent protease 99.9 1.8E-26 7.5E-31 184.6 11.0 118 7-125 6-124 (125) 5 3l9k_W Dynein intermediate cha 33.9 20 0.00086 14.7 3.8 33 180-212 1-33 (38) 6 1upt_B Golgi autoantigen, golg 22.1 33 0.0014 13.4 3.0 27 168-194 24-50 (60) 7 3nbk_A Phosphopantetheine aden 16.2 36 0.0015 13.2 0.8 34 26-62 23-57 (177) 8 1x9p_A Penton protein; jellyro 14.4 40 0.0017 12.9 0.6 10 42-51 131-140 (523) 9 1u9c_A APC35852; structural ge 12.7 56 0.0023 12.0 3.1 38 25-62 91-130 (224) 10 2p1h_A APAF-1, apoptotic prote 10.9 64 0.0027 11.6 6.3 44 162-205 19-62 (94) No 1 >3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, cytoplasm, hydrolase, nucleotide-B protease, serine protease, stress response; 2.60A {Bacillus subtilis} Probab=100.00 E-value=5.4e-41 Score=275.81 Aligned_cols=199 Identities=17% Similarity=0.303 Sum_probs=170.8 Q ss_pred HHCCCCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHEEEEEEEECCCCCC Q ss_conf 67843155333087357888512343183899999999997099326620123433446643521100132421013466 Q gi|254780740|r 12 EDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGCIGRITSFVETD 91 (221) Q Consensus 12 ~~lp~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~~~~~~~~~~~~l~~vGt~a~I~~~~~~~ 91 (221) +++|++||+|||+|+|+|||+.+|||||||||++|+++|+++++.||++++++...+.+..+++|+|||+|+|+++.++| T Consensus 3 ~~~p~~lPv~pL~~~VlfPg~~~pL~I~e~r~~~~i~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~vG~l~~I~~~~~~~ 82 (209) T 3m65_A 3 EELKRSIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHDHMIFLATQQDISIDEPGEDEIFTVGTYTKIKQMLKLP 82 (209) T ss_dssp -CEEEEEEEEEESSCCCCTTCEEEEEECSHHHHHHHHHHTTTTSEEEEEEBSSTTCSSCCGGGBCSEEEEEEEEEEEECT T ss_pred CCCCCCEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHEEEEEEEEEEEEECC T ss_conf 65777667998689312899656578488899999999984099524552022235688632012144278887887449 Q ss_pred CCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH-H-HHHH-HHCCHH Q ss_conf 662489875421111010002454068999952222254102456788865788998865103201-3-5777-630535 Q gi|254780740|r 92 DGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDA-D-WESI-EEASNE 168 (221) Q Consensus 92 dG~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~i-~~~~~~ 168 (221) ||++.|+++|.+||++.+ ....+||..|.++...++....++..+....+.+.++++........ + ...+ +..+++ T Consensus 83 dg~~~i~~~G~~R~~i~~-~~~~~~~~~a~v~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (209) T 3m65_A 83 NGTIRVLVEGLKRAHIVK-YNEHEDYTSVDIQLIHEDDSKDTEDEALMRTLLDHFDQYIKISKKISAETYAAVTDIEEPG 161 (209) T ss_dssp TSCEEEEEEEEEEEEEEE-EEECSSSEEEEEEECCCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHH T ss_pred CCCEEEEEEEEEEEEECC-CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH T ss_conf 995899999997565203-3444445414798722556674777889999999999999863110177787777417889 Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 7999999867999899999853689899999999999999999 Q gi|254780740|r 169 ILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMKIVLAR 211 (221) Q Consensus 169 ~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le~el~~ 211 (221) .++|++|++++++.++||+|||+.|+.+|+++++++|+.|+.- T Consensus 162 ~lad~~a~~l~~~~~ekQ~lLe~~d~~~Rl~~~l~~L~~e~~~ 204 (209) T 3m65_A 162 RMADIVASHLPLKLKDKQDILETADVKDRLNKVIDFINNEKEV 204 (209) T ss_dssp HHHHHHHHHSCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9999999808999999999984899999999999999999999 No 2 >3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli} Probab=100.00 E-value=1.1e-40 Score=273.77 Aligned_cols=216 Identities=20% Similarity=0.244 Sum_probs=179.8 Q ss_pred CHHHCCH-HHCCCCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHEEEEEE Q ss_conf 5100796-678431553330873578885123431838999999999970993266201234334466435211001324 Q gi|254780740|r 5 NTIYKNR-EDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGCIGR 83 (221) Q Consensus 5 ~~~~~~~-~~lp~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~~~~~~~~~~~~l~~vGt~a~ 83 (221) |-+.|++ .+=+-.||+|||+|+|+|||+.+||+||||||++|+++|+++++.||++++++...+.++.+++|+|||+|+ T Consensus 4 ~~~~mn~~~~~~~~LPv~PL~~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~~~i~lv~~~~~~~e~~~~~~l~~vGtl~~ 83 (252) T 3ljc_A 4 HHHHMNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVAS 83 (252) T ss_dssp ----------CCCCCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTTTEEEEEEBCSSCCSSCCSSSBCSEEEEEE T ss_pred CCCCCCCCCCCCCEEEEEEECCEEECCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEE T ss_conf 33567977677623779981891117992558886989999999999834995699972466667887666535456999 Q ss_pred EECCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH-H-HHH Q ss_conf 21013466662489875421111010002454068999952222254102456788865788998865103201-3-577 Q gi|254780740|r 84 ITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDA-D-WES 161 (221) Q Consensus 84 I~~~~~~~dG~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~ 161 (221) |.++.++|||++.|+++|.+||+|.+ +....||..|.++...++.....+..+....+.+.++++........ + ... T Consensus 84 I~~~~~~~dG~~~i~v~g~~R~~i~~-~~~~~~~~~~~v~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 162 (252) T 3ljc_A 84 ILQMLKLPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTS 162 (252) T ss_dssp ECCCBCCTTSCEEEEEEEEEEEECSE-EEEETTEEEEECCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHH T ss_pred EEEEEECCCCCEEEEEEEEEECCCCE-EEECCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 98877548986999997764023210-33202323334301257654435788999999999999998667789999988 Q ss_pred H-HHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHH--HHHHHHHHHHHCCCC Q ss_conf 7-63053579999998679998999998536898999999999999--999997423210349 Q gi|254780740|r 162 I-EEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMK--IVLARAYTHCENRLQ 221 (221) Q Consensus 162 i-~~~~~~~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le--~el~~~~~~~~~~vq 221 (221) + ...+++.++|++|++++++.++||+|||+.|+.+|+++++++|+ .++.+..+++..+|+ T Consensus 163 ~~~~~~~~~l~d~ia~~l~~~~~ekQ~lLe~~d~~~Rl~~l~~~L~~e~e~~~l~~~I~~~v~ 225 (252) T 3ljc_A 163 LNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK 225 (252) T ss_dssp TTSCCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 753489999999999747999889986764699999999999999999999999999999999 No 3 >1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.60A {Bordetella parapertussis 12822} SCOP: b.122.1.10 Probab=100.00 E-value=2.4e-37 Score=252.86 Aligned_cols=199 Identities=18% Similarity=0.176 Sum_probs=154.6 Q ss_pred CCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCCCCCHHHEEEEEEEECCCCCCCC Q ss_conf 31553330873578885123431838999999999970993266201--2343344664352110013242101346666 Q gi|254780740|r 16 CLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQP--AISGFLANSDNGLSQIGCIGRITSFVETDDG 93 (221) Q Consensus 16 ~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~--~~~~~~~~~~~~l~~vGt~a~I~~~~~~~dG 93 (221) ..||+||| ++|+|||+.+||+||||||++|+++|+++++.||++.. .+...+.++.+++|+|||+|+|.++.++||| T Consensus 2 ~elPlfpL-~~VlfP~~~~pL~Ifepry~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vGt~~~I~~~~~~~dg 80 (210) T 1zbo_A 2 AEIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPA 80 (210) T ss_dssp CEEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTT T ss_pred CCCCEEEC-CCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC T ss_conf 83777716-86556995455576857999999999842997157741257532356676652034899998630115799 Q ss_pred CEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCHH--HHHHHHHHHHHHHHHHHHHCCCCHH--HHH-HHHCCHH Q ss_conf 2489875421111010002454068999952222254102--4567888657889988651032013--577-7630535 Q gi|254780740|r 94 HYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGND--NDGVDRVALLEVFRNYLTVNNLDAD--WES-IEEASNE 168 (221) Q Consensus 94 ~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~~~d~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~--~~~-i~~~~~~ 168 (221) ++.|+++|++||||.++....++|..|.+.+.+++..... +.......+.+.++.+......... +.. .+..++. T Consensus 81 ~~~i~~~G~~R~ri~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (210) T 1zbo_A 81 LLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCG 160 (210) T ss_dssp CEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBCSCCCTTCHH T ss_pred CEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHCCCCHH T ss_conf 77999750101887678833786389999966788775665999999999999999999724886354531102127889 Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 799999986799989999985368989999999999999999974232 Q gi|254780740|r 169 ILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMKIVLARAYTHC 216 (221) Q Consensus 169 ~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le~el~~~~~~~ 216 (221) .++|++|++++++.++||+|||+. ..+|++++..+|+.+....+.+- T Consensus 161 ~l~d~~a~~l~l~~~~kQ~LLE~d-~~eRL~~l~~~L~~~~~~le~~~ 207 (210) T 1zbo_A 161 WVADRWAEMLSLPPADKARLLLLP-PLDRLREIDAVLAADGHALEHHH 207 (210) T ss_dssp HHHHHHHHHSCCCHHHHHHHHHSC-HHHHHHHHHHHHHC--------- T ss_pred HHHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999999980898999999986899-99999999999999767763032 No 4 >2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10 Probab=99.94 E-value=1.8e-26 Score=184.65 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=106.6 Q ss_pred HHCCHH-HCCCCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHEEEEEEEE Q ss_conf 007966-7843155333087357888512343183899999999997099326620123433446643521100132421 Q gi|254780740|r 7 IYKNRE-DLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGCIGRIT 85 (221) Q Consensus 7 ~~~~~~-~lp~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~~~~~~~~~~~~l~~vGt~a~I~ 85 (221) +-|+++ .-+..||+|||+|.|+|||+.+||+|||+||++|+++|+++++.++++.+.+...+.++.+++|++||+|+|. T Consensus 6 ~~m~~e~~~~~~lPvlPl~~~vlFPg~~~PL~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vG~~a~I~ 85 (125) T 2ane_A 6 HHMNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASIL 85 (125) T ss_dssp ---------CEEEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTTSEEEEEEBCTTCCSSCCGGGBCSEEEEEEEE T ss_pred CCCCCCCCCCCEEEEEEECCEEECCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHEEEEEEEE T ss_conf 34386757652370999189265799258789997999999999983898088881246555577633032046899999 Q ss_pred CCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEEC Q ss_conf 0134666624898754211110100024540689999522 Q gi|254780740|r 86 SFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPF 125 (221) Q Consensus 86 ~~~~~~dG~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~ 125 (221) ++.+++||+++++++|.+||||.+| .+.+||+.|+|+++ T Consensus 86 ~~~~~~dG~~~v~v~G~~R~kI~~~-~~~~p~~~a~Ve~l 124 (125) T 2ane_A 86 QMLKLPDGTVKVLVEGLQRARISAL-SDNGEHFSAKAEYL 124 (125) T ss_dssp EEEECTTSCEEEEEEEEEEEEEEEE-EECSSSEEEEEEEC T ss_pred EEEECCCCCEEEEEEEEEEEEEEEE-ECCCCCEEEEEEEC T ss_conf 9887699869999999989999999-87899889999975 No 5 >3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster} Probab=33.93 E-value=20 Score=14.75 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=27.1 Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 998999998536898999999999999999997 Q gi|254780740|r 180 FSEEEKQALLEAPDFRARAQTLIAIMKIVLARA 212 (221) Q Consensus 180 ~~~~eKQ~lLE~~~~~~Rl~~l~~~Le~el~~~ 212 (221) ++-++||.||-..+-..-+.+-..+++..|.+. T Consensus 1 LsEEEK~~Il~SedF~~F~drs~Ri~ERAL~E~ 33 (38) T 3l9k_W 1 LSEEQKQMIILSENFQRFVVRAGRVIERALSEN 33 (38) T ss_dssp CCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHS T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 988999899978999999998789999998102 No 6 >1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E* Probab=22.11 E-value=33 Score=13.43 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=22.3 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCH Q ss_conf 579999998679998999998536898 Q gi|254780740|r 168 EILVNSLAMLSPFSEEEKQALLEAPDF 194 (221) Q Consensus 168 ~~l~d~iA~~l~~~~~eKQ~lLE~~~~ 194 (221) ..++-.||+.+.|+.++.|.+||-.+. T Consensus 24 ~tlaKVi~av~kF~~~Q~q~il~kE~~ 50 (60) T 1upt_B 24 KTMAKVITTVLKFPDDQTQKILEREDA 50 (60) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHC T ss_conf 789999999990899999999998771 No 7 >3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3lcj_A* 1tfu_A Probab=16.22 E-value=36 Score=13.17 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=24.5 Q ss_pred CEECCCCCCCEEECCHHHHHHHHHHHHC-CCCEEEEEC Q ss_conf 3578885123431838999999999970-993266201 Q gi|254780740|r 26 MLLLPGSRFSFSVFERRYIAMFDSVLAG-DRLIGLVQP 62 (221) Q Consensus 26 ~VlFP~~~~pL~Ife~ry~~~i~~~l~~-~~~igiv~~ 62 (221) .-+|||+--|+|.|- +.+++.|++. |+.+.++.. T Consensus 23 iai~~GsFdPiH~GH---l~i~~~a~~~~D~viv~~~~ 57 (177) T 3nbk_A 23 GAVCPGSFDPVTLGH---VDIFERAAAQFDEVVVAILV 57 (177) T ss_dssp EEEEEECCTTCCHHH---HHHHHHHHHHSSEEEEEECC T ss_pred EEEECCCCCCCCHHH---HHHHHHHHHHCCEEEEEECC T ss_conf 999686779887899---99999999869989998345 No 8 >1x9p_A Penton protein; jellyroll domain, anti-parallel beta sheet, insertion domain, virus like particle; HET: C15; 3.30A {Human adenovirus 2} PDB: 1x9t_A* 2bld_A 2c9f_A 2c9g_A 2c6s_A Probab=14.36 E-value=40 Score=12.93 Aligned_cols=10 Identities=10% Similarity=0.351 Sum_probs=4.4 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q gi|254780740|r 42 RYIAMFDSVL 51 (221) Q Consensus 42 ry~~~i~~~l 51 (221) .-+.+++++. T Consensus 131 ~~IDLmNnaI 140 (523) T 1x9p_A 131 MTIDLMNNAI 140 (523) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 7999888999 No 9 >1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, parkinson'S disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Probab=12.68 E-value=56 Score=12.00 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=27.8 Q ss_pred CCEECCCCCCCEE--ECCHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 7357888512343--1838999999999970993266201 Q gi|254780740|r 25 GMLLLPGSRFSFS--VFERRYIAMFDSVLAGDRLIGLVQP 62 (221) Q Consensus 25 ~~VlFP~~~~pL~--Ife~ry~~~i~~~l~~~~~igiv~~ 62 (221) +.|++||..-|.. -..++-.+++.+..+.++.++.+|. T Consensus 91 dav~ipGG~g~~~~l~~~~~l~~li~~~~~~~k~iaaICh 130 (224) T 1u9c_A 91 DAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCH 130 (224) T ss_dssp SEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETT T ss_pred CEEEECCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECC T ss_conf 9899589830777521158999999999975997999612 No 10 >2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A Probab=10.91 E-value=64 Score=11.64 Aligned_cols=44 Identities=14% Similarity=0.251 Sum_probs=0.0 Q ss_pred HHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 76305357999999867999899999853689899999999999 Q gi|254780740|r 162 IEEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIM 205 (221) Q Consensus 162 i~~~~~~~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~L 205 (221) +...++..+.+.+.+.-.++.++.+.|....+..+|..+++.+| T Consensus 19 v~~l~~~~il~~L~~~~vlt~~~~e~I~~~~t~~~k~~~lL~~L 62 (94) T 2p1h_A 19 EKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 62 (94) T ss_dssp HHHCCHHHHHHHHHHHTSSCHHHHHHHHTSSSHHHHHHHHHHHH T ss_pred HHHCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 98599999999998879999999999984798299999999987 Done!