HHSEARCH alignment of GI: 254780740 and SCOP domain: d1zboa1

Alignment
>d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]}
Probab=100.00  E-value=5.3e-37  Score=249.26  Aligned_cols=189  Identities=18%  Similarity=0.180  Sum_probs=147.1

Q ss_pred             CCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCCCCCHHHEEEEEEEECCCCCCCC
Q ss_conf             315533308735788851234318389999999999709932662012--343344664352110013242101346666
Q gi|254780740|r   16 CLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPA--ISGFLANSDNGLSQIGCIGRITSFVETDDG   93 (221)
Q Consensus        16 ~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~--~~~~~~~~~~~l~~vGt~a~I~~~~~~~dG   93 (221)
                      ..||+||| ++|+|||+.+|||||||||++|+++|+++++.||++...  ......++.+++|+|||+|+|.++.++|||
T Consensus         1 ~elPlfpL-~~VlfP~~~~PL~Ife~ry~~~i~~~l~~~~~~~~v~~~~~~~~~~~~~~~~l~~vGt~~~I~~~~~~~dG   79 (197)
T d1zboa1           1 AEIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPA   79 (197)
T ss_dssp             CEEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTT
T ss_pred             CCCCEEEC-CCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
T ss_conf             99777848-87567995354675856999999999854997023112356531123565540134578887520236777


Q ss_pred             CEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCHH--HHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHCCHH
Q ss_conf             2489875421111010002454068999952222254102--4567888657889988651032013---5777630535
Q gi|254780740|r   94 HYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGND--NDGVDRVALLEVFRNYLTVNNLDAD---WESIEEASNE  168 (221)
Q Consensus        94 ~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~~~d~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~---~~~i~~~~~~  168 (221)
                      ++.|+++|.+||||.++....++|+.+.++..+++.....  +.......+.+.++++.........   .......++.
T Consensus        80 ~~~i~v~G~~R~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (197)
T d1zboa1          80 LLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCG  159 (197)
T ss_dssp             CEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBCSCCCTTCHH
T ss_pred             CEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHH
T ss_conf             53676522000333346613675378898742666775673999999999999999999735785065553123127899


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             79999998679998999998536898999999999999
Q gi|254780740|r  169 ILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMK  206 (221)
Q Consensus       169 ~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le  206 (221)
                      .++|++|++++++.++||+|||+ |..+|++++.++|+
T Consensus       160 ~l~~~la~~l~l~~~~kQ~lLE~-~~~~RL~~l~~~L~  196 (197)
T d1zboa1         160 WVADRWAEMLSLPPADKARLLLL-PPLDRLREIDAVLA  196 (197)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHHC
T ss_conf             99999998289999999998779-98999999999976


SCOP domain information

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: LON domain-like
domain: Hypothetical protein BPP1347
species: Bordetella parapertussis [TaxId: 519]