Query gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 221 No_of_seqs 129 out of 2186 Neff 8.3 Searched_HMMs 13730 Date Wed Jun 1 08:04:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780740.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1zboa1 b.122.1.10 (A:2-198) H 100.0 5.3E-37 3.9E-41 249.3 17.9 189 16-206 1-196 (197) 2 d2anea1 b.122.1.10 (A:8-117) A 99.9 3.8E-26 2.7E-30 181.1 11.0 108 16-124 2-109 (110) 3 d1cy5a_ a.77.1.3 (A:) Apoptoti 19.5 22 0.0016 13.1 6.3 44 163-206 18-61 (93) 4 d1uptb_ a.193.1.1 (B:) Golgi a 19.1 22 0.0016 13.0 3.4 29 167-195 21-49 (58) 5 d1p80a1 c.23.16.3 (A:598-753) 19.0 22 0.0016 13.0 4.2 21 40-60 81-101 (156) 6 d1qjca_ c.26.1.3 (A:) Phosphop 12.4 31 0.0022 12.1 0.8 33 27-62 3-36 (157) 7 d1oi4a1 c.23.16.2 (A:23-192) H 11.9 34 0.0025 11.9 2.7 37 25-61 66-103 (170) 8 d1a0ia1 b.40.4.6 (A:241-349) A 10.8 37 0.0027 11.6 1.5 18 78-95 83-100 (109) 9 d1dy2a_ d.169.1.5 (A:) Endosta 9.2 42 0.0031 11.3 1.4 16 17-32 58-73 (168) 10 d1bcga_ g.3.7.1 (A:) Scorpion 8.9 24 0.0018 12.8 -0.7 14 14-27 53-66 (74) No 1 >d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]} Probab=100.00 E-value=5.3e-37 Score=249.26 Aligned_cols=189 Identities=18% Similarity=0.180 Sum_probs=147.1 Q ss_pred CCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCCCCCHHHEEEEEEEECCCCCCCC Q ss_conf 315533308735788851234318389999999999709932662012--343344664352110013242101346666 Q gi|254780740|r 16 CLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPA--ISGFLANSDNGLSQIGCIGRITSFVETDDG 93 (221) Q Consensus 16 ~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~--~~~~~~~~~~~l~~vGt~a~I~~~~~~~dG 93 (221) ..||+||| ++|+|||+.+|||||||||++|+++|+++++.||++... ......++.+++|+|||+|+|.++.++||| T Consensus 1 ~elPlfpL-~~VlfP~~~~PL~Ife~ry~~~i~~~l~~~~~~~~v~~~~~~~~~~~~~~~~l~~vGt~~~I~~~~~~~dG 79 (197) T d1zboa1 1 AEIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPA 79 (197) T ss_dssp CEEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTT T ss_pred CCCCEEEC-CCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC T ss_conf 99777848-87567995354675856999999999854997023112356531123565540134578887520236777 Q ss_pred CEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCHH--HHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHCCHH Q ss_conf 2489875421111010002454068999952222254102--4567888657889988651032013---5777630535 Q gi|254780740|r 94 HYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGND--NDGVDRVALLEVFRNYLTVNNLDAD---WESIEEASNE 168 (221) Q Consensus 94 ~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~~~d~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~---~~~i~~~~~~ 168 (221) ++.|+++|.+||||.++....++|+.+.++..+++..... +.......+.+.++++......... .......++. T Consensus 80 ~~~i~v~G~~R~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197) T d1zboa1 80 LLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCG 159 (197) T ss_dssp CEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBCSCCCTTCHH T ss_pred CEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHH T ss_conf 53676522000333346613675378898742666775673999999999999999999735785065553123127899 Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 79999998679998999998536898999999999999 Q gi|254780740|r 169 ILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMK 206 (221) Q Consensus 169 ~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le 206 (221) .++|++|++++++.++||+|||+ |..+|++++.++|+ T Consensus 160 ~l~~~la~~l~l~~~~kQ~lLE~-~~~~RL~~l~~~L~ 196 (197) T d1zboa1 160 WVADRWAEMLSLPPADKARLLLL-PPLDRLREIDAVLA 196 (197) T ss_dssp HHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHHC T ss_conf 99999998289999999998779-98999999999976 No 2 >d2anea1 b.122.1.10 (A:8-117) ATP-dependent protease La (Lon), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=99.93 E-value=3.8e-26 Score=181.12 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=102.2 Q ss_pred CCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHEEEEEEEECCCCCCCCCE Q ss_conf 31553330873578885123431838999999999970993266201234334466435211001324210134666624 Q gi|254780740|r 16 CLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGCIGRITSFVETDDGHY 95 (221) Q Consensus 16 ~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~~~~~~~~~~~~l~~vGt~a~I~~~~~~~dG~~ 95 (221) ..||+|||+|.|+|||+.+||+|||+||++|+++|+++++.++++.+.+...+.++.+++|++||+|+|.+..+++||++ T Consensus 2 ~~lPv~pl~~~vlFPg~~~pl~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~i~~~~~~~dg~~ 81 (110) T d2anea1 2 IEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTV 81 (110) T ss_dssp EEEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTTSEEEEEEBCTTCCSSCCGGGBCSEEEEEEEEEEEECTTSCE T ss_pred CEEEEEECCCCEECCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHCEEEEEEEEEEEECCCCEE T ss_conf 53719980795517990187898978999999998743685056620134455654310210003889999975169719 Q ss_pred EEEEEEEEEEEECCCCCCCCCEEEEEEEE Q ss_conf 89875421111010002454068999952 Q gi|254780740|r 96 IMTVIGVCRFRLLEEAYQLNSWRCFYIAP 124 (221) Q Consensus 96 ~i~v~G~~R~kI~~~~~~~~py~~a~v~~ 124 (221) +++++|.+||+|.++ .+.+||+.|+|+. T Consensus 82 ~i~v~g~~R~~I~~~-~~~~p~~~a~Ve~ 109 (110) T d2anea1 82 KVLVEGLQRARISAL-SDNGEHFSAKAEY 109 (110) T ss_dssp EEEEEEEEEEEEEEE-EECSSSEEEEEEE T ss_pred EEEEEEEEEEEEEEE-ECCCCCEEEEEEE T ss_conf 999999988999999-8579978999998 No 3 >d1cy5a_ a.77.1.3 (A:) Apoptotic protease activating factor 1, APAF-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=19.50 E-value=22 Score=13.09 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=35.3 Q ss_pred HHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 63053579999998679998999998536898999999999999 Q gi|254780740|r 163 EEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMK 206 (221) Q Consensus 163 ~~~~~~~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le 206 (221) ...++..+.+.+.+.--++.++.+.|....+..+|...++.+|. T Consensus 18 ~~l~~~~vl~~L~~~~vlt~~e~e~I~~~~t~~~k~~~LL~~L~ 61 (93) T d1cy5a_ 18 KDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMIL 61 (93) T ss_dssp HHCCHHHHHHHHHHHTSSCHHHHHHHHTSSSHHHHHHHHHHHHH T ss_pred HHCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 86989999999978699999999999843771999999999988 No 4 >d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]} Probab=19.11 E-value=22 Score=13.03 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=23.4 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHH Q ss_conf 35799999986799989999985368989 Q gi|254780740|r 167 NEILVNSLAMLSPFSEEEKQALLEAPDFR 195 (221) Q Consensus 167 ~~~l~d~iA~~l~~~~~eKQ~lLE~~~~~ 195 (221) ...++-.||+.+.|+.++.|.+||-.+.+ T Consensus 21 ~~tlaKVi~av~kF~~~Q~q~iL~kE~~r 49 (58) T d1uptb_ 21 TKTMAKVITTVLKFPDDQTQKILEREDAR 49 (58) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHCC T ss_conf 13799999999918999999999987600 No 5 >d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} Probab=18.97 E-value=22 Score=13.01 Aligned_cols=21 Identities=10% Similarity=-0.081 Sum_probs=8.2 Q ss_pred CHHHHHHHHHHHHCCCCEEEE Q ss_conf 389999999999709932662 Q gi|254780740|r 40 ERRYIAMFDSVLAGDRLIGLV 60 (221) Q Consensus 40 e~ry~~~i~~~l~~~~~igiv 60 (221) .++.+..+.++.+..+.++.+ T Consensus 81 ~~~~~~~i~e~~~~~K~I~ai 101 (156) T d1p80a1 81 NGDANYYLMEAYKHLKPIALA 101 (156) T ss_dssp CHHHHHHHHHHHHTTCCEEEE T ss_pred CHHHHHHHHHHHHCCCEEEEE T ss_conf 158999999999869969998 No 6 >d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]} Probab=12.39 E-value=31 Score=12.12 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=24.0 Q ss_pred EECCCCCCCEEECCHHHHHHHHHHHHC-CCCEEEEEC Q ss_conf 578885123431838999999999970-993266201 Q gi|254780740|r 27 LLLPGSRFSFSVFERRYIAMFDSVLAG-DRLIGLVQP 62 (221) Q Consensus 27 VlFP~~~~pL~Ife~ry~~~i~~~l~~-~~~igiv~~ 62 (221) -+|+|+--|+|.|-- .+++.|.+. |+.+.+++. T Consensus 3 AifgGsFdP~H~GHl---~li~~a~~~~D~v~v~~~~ 36 (157) T d1qjca_ 3 AIYPGTFDPITNGHI---DIVTRATQMFDHVILAIAA 36 (157) T ss_dssp EEEEECCTTCCHHHH---HHHHHHHTTSSEEEEEEES T ss_pred EEEEECCCCCCHHHH---HHHHHHHHHCCEEEECCCC T ss_conf 998024687889999---9999999857972002567 No 7 >d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Probab=11.95 E-value=34 Score=11.86 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=21.7 Q ss_pred CCEECCCCCCCEEE-CCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 73578885123431-83899999999997099326620 Q gi|254780740|r 25 GMLLLPGSRFSFSV-FERRYIAMFDSVLAGDRLIGLVQ 61 (221) Q Consensus 25 ~~VlFP~~~~pL~I-fe~ry~~~i~~~l~~~~~igiv~ 61 (221) +.+++||..-+-+. ..++.++.+++..+.++.++.+| T Consensus 66 DalivpGG~~~~~l~~~~~~~~~i~~~~~~~k~i~aiC 103 (170) T d1oi4a1 66 DALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAIC 103 (170) T ss_dssp SEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEET T ss_pred EEEEECCCHHHHHHCCCHHHHHHHHHHHHCCCEEEECC T ss_conf 29997240466564248378999998863178145202 No 8 >d1a0ia1 b.40.4.6 (A:241-349) ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: 10760]} Probab=10.79 E-value=37 Score=11.62 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=10.8 Q ss_pred EEEEEEEECCCCCCCCCE Q ss_conf 001324210134666624 Q gi|254780740|r 78 IGCIGRITSFVETDDGHY 95 (221) Q Consensus 78 vGt~a~I~~~~~~~dG~~ 95 (221) .|-.|+|.-.+++|||++ T Consensus 83 ~G~~~eV~yME~tpDGSL 100 (109) T d1a0ia1 83 DGWACQISYMEETPDGSL 100 (109) T ss_dssp TTCEEEEEESEECTTSCE T ss_pred CCEEEEEEEEEECCCCCC T ss_conf 666899999864799852 No 9 >d1dy2a_ d.169.1.5 (A:) Endostatin domain of collagen alpha1(xv) {Mouse (Mus musculus) [TaxId: 10090]} Probab=9.23 E-value=42 Score=11.26 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=13.4 Q ss_pred CCCEEECCCCEECCCC Q ss_conf 1553330873578885 Q gi|254780740|r 17 LLPIFPLLGMLLLPGS 32 (221) Q Consensus 17 ~lPi~PL~~~VlFP~~ 32 (221) .+||.-|+|-|+|+.= T Consensus 58 ~lPiVNlrgevLF~sW 73 (168) T d1dy2a_ 58 GLPIVNLKGQVLFNNW 73 (168) T ss_dssp SCCEECTTSCEEESCS T ss_pred CCCEEECCCCCCHHHH T ss_conf 8872743676505409 No 10 >d1bcga_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Buthotus judaicus), BJXTR-IT [TaxId: 6863]} Probab=8.89 E-value=24 Score=12.78 Aligned_cols=14 Identities=29% Similarity=0.244 Sum_probs=0.0 Q ss_pred CCCCCCEEECCCCE Q ss_conf 84315533308735 Q gi|254780740|r 14 LPCLLPIFPLLGML 27 (221) Q Consensus 14 lp~~lPi~PL~~~V 27 (221) ||...|+.||+|.. T Consensus 53 LPD~~pi~~l~~~~ 66 (74) T d1bcga_ 53 LEDDKPIGPMKDIT 66 (74) T ss_dssp EETTSCBCCCCHHH T ss_pred CCCCCCCCCCCCHH T ss_conf 88878325685313 Done!