Query         gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 221
No_of_seqs    129 out of 2186
Neff          8.3 
Searched_HMMs 13730
Date          Wed Jun  1 08:04:45 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780740.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1zboa1 b.122.1.10 (A:2-198) H 100.0 5.3E-37 3.9E-41  249.3  17.9  189   16-206     1-196 (197)
  2 d2anea1 b.122.1.10 (A:8-117) A  99.9 3.8E-26 2.7E-30  181.1  11.0  108   16-124     2-109 (110)
  3 d1cy5a_ a.77.1.3 (A:) Apoptoti  19.5      22  0.0016   13.1   6.3   44  163-206    18-61  (93)
  4 d1uptb_ a.193.1.1 (B:) Golgi a  19.1      22  0.0016   13.0   3.4   29  167-195    21-49  (58)
  5 d1p80a1 c.23.16.3 (A:598-753)   19.0      22  0.0016   13.0   4.2   21   40-60     81-101 (156)
  6 d1qjca_ c.26.1.3 (A:) Phosphop  12.4      31  0.0022   12.1   0.8   33   27-62      3-36  (157)
  7 d1oi4a1 c.23.16.2 (A:23-192) H  11.9      34  0.0025   11.9   2.7   37   25-61     66-103 (170)
  8 d1a0ia1 b.40.4.6 (A:241-349) A  10.8      37  0.0027   11.6   1.5   18   78-95     83-100 (109)
  9 d1dy2a_ d.169.1.5 (A:) Endosta   9.2      42  0.0031   11.3   1.4   16   17-32     58-73  (168)
 10 d1bcga_ g.3.7.1 (A:) Scorpion    8.9      24  0.0018   12.8  -0.7   14   14-27     53-66  (74)

No 1  
>d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]}
Probab=100.00  E-value=5.3e-37  Score=249.26  Aligned_cols=189  Identities=18%  Similarity=0.180  Sum_probs=147.1

Q ss_pred             CCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCCCCCHHHEEEEEEEECCCCCCCC
Q ss_conf             315533308735788851234318389999999999709932662012--343344664352110013242101346666
Q gi|254780740|r   16 CLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPA--ISGFLANSDNGLSQIGCIGRITSFVETDDG   93 (221)
Q Consensus        16 ~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~--~~~~~~~~~~~l~~vGt~a~I~~~~~~~dG   93 (221)
                      ..||+||| ++|+|||+.+|||||||||++|+++|+++++.||++...  ......++.+++|+|||+|+|.++.++|||
T Consensus         1 ~elPlfpL-~~VlfP~~~~PL~Ife~ry~~~i~~~l~~~~~~~~v~~~~~~~~~~~~~~~~l~~vGt~~~I~~~~~~~dG   79 (197)
T d1zboa1           1 AEIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPA   79 (197)
T ss_dssp             CEEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCCSSCCCCEEEEEEEEEEEEEECSSTT
T ss_pred             CCCCEEEC-CCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCC
T ss_conf             99777848-87567995354675856999999999854997023112356531123565540134578887520236777


Q ss_pred             CEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCHH--HHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHCCHH
Q ss_conf             2489875421111010002454068999952222254102--4567888657889988651032013---5777630535
Q gi|254780740|r   94 HYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGND--NDGVDRVALLEVFRNYLTVNNLDAD---WESIEEASNE  168 (221)
Q Consensus        94 ~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~~~d~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~---~~~i~~~~~~  168 (221)
                      ++.|+++|.+||||.++....++|+.+.++..+++.....  +.......+.+.++++.........   .......++.
T Consensus        80 ~~~i~v~G~~R~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (197)
T d1zboa1          80 LLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCG  159 (197)
T ss_dssp             CEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBCSCCCTTCHH
T ss_pred             CEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHH
T ss_conf             53676522000333346613675378898742666775673999999999999999999735785065553123127899


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             79999998679998999998536898999999999999
Q gi|254780740|r  169 ILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMK  206 (221)
Q Consensus       169 ~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le  206 (221)
                      .++|++|++++++.++||+|||+ |..+|++++.++|+
T Consensus       160 ~l~~~la~~l~l~~~~kQ~lLE~-~~~~RL~~l~~~L~  196 (197)
T d1zboa1         160 WVADRWAEMLSLPPADKARLLLL-PPLDRLREIDAVLA  196 (197)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHHC
T ss_conf             99999998289999999998779-98999999999976


No 2  
>d2anea1 b.122.1.10 (A:8-117) ATP-dependent protease La (Lon), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.93  E-value=3.8e-26  Score=181.12  Aligned_cols=108  Identities=19%  Similarity=0.212  Sum_probs=102.2

Q ss_pred             CCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHEEEEEEEECCCCCCCCCE
Q ss_conf             31553330873578885123431838999999999970993266201234334466435211001324210134666624
Q gi|254780740|r   16 CLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGCIGRITSFVETDDGHY   95 (221)
Q Consensus        16 ~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~~~~~~~~~~~~l~~vGt~a~I~~~~~~~dG~~   95 (221)
                      ..||+|||+|.|+|||+.+||+|||+||++|+++|+++++.++++.+.+...+.++.+++|++||+|+|.+..+++||++
T Consensus         2 ~~lPv~pl~~~vlFPg~~~pl~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~i~~~~~~~dg~~   81 (110)
T d2anea1           2 IEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTV   81 (110)
T ss_dssp             EEEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTTSEEEEEEBCTTCCSSCCGGGBCSEEEEEEEEEEEECTTSCE
T ss_pred             CEEEEEECCCCEECCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHCEEEEEEEEEEEECCCCEE
T ss_conf             53719980795517990187898978999999998743685056620134455654310210003889999975169719


Q ss_pred             EEEEEEEEEEEECCCCCCCCCEEEEEEEE
Q ss_conf             89875421111010002454068999952
Q gi|254780740|r   96 IMTVIGVCRFRLLEEAYQLNSWRCFYIAP  124 (221)
Q Consensus        96 ~i~v~G~~R~kI~~~~~~~~py~~a~v~~  124 (221)
                      +++++|.+||+|.++ .+.+||+.|+|+.
T Consensus        82 ~i~v~g~~R~~I~~~-~~~~p~~~a~Ve~  109 (110)
T d2anea1          82 KVLVEGLQRARISAL-SDNGEHFSAKAEY  109 (110)
T ss_dssp             EEEEEEEEEEEEEEE-EECSSSEEEEEEE
T ss_pred             EEEEEEEEEEEEEEE-ECCCCCEEEEEEE
T ss_conf             999999988999999-8579978999998


No 3  
>d1cy5a_ a.77.1.3 (A:) Apoptotic protease activating factor 1, APAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.50  E-value=22  Score=13.09  Aligned_cols=44  Identities=14%  Similarity=0.255  Sum_probs=35.3

Q ss_pred             HHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             63053579999998679998999998536898999999999999
Q gi|254780740|r  163 EEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMK  206 (221)
Q Consensus       163 ~~~~~~~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le  206 (221)
                      ...++..+.+.+.+.--++.++.+.|....+..+|...++.+|.
T Consensus        18 ~~l~~~~vl~~L~~~~vlt~~e~e~I~~~~t~~~k~~~LL~~L~   61 (93)
T d1cy5a_          18 KDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMIL   61 (93)
T ss_dssp             HHCCHHHHHHHHHHHTSSCHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             86989999999978699999999999843771999999999988


No 4  
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.11  E-value=22  Score=13.03  Aligned_cols=29  Identities=21%  Similarity=0.449  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCCHH
Q ss_conf             35799999986799989999985368989
Q gi|254780740|r  167 NEILVNSLAMLSPFSEEEKQALLEAPDFR  195 (221)
Q Consensus       167 ~~~l~d~iA~~l~~~~~eKQ~lLE~~~~~  195 (221)
                      ...++-.||+.+.|+.++.|.+||-.+.+
T Consensus        21 ~~tlaKVi~av~kF~~~Q~q~iL~kE~~r   49 (58)
T d1uptb_          21 TKTMAKVITTVLKFPDDQTQKILEREDAR   49 (58)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf             13799999999918999999999987600


No 5  
>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}
Probab=18.97  E-value=22  Score=13.01  Aligned_cols=21  Identities=10%  Similarity=-0.081  Sum_probs=8.2

Q ss_pred             CHHHHHHHHHHHHCCCCEEEE
Q ss_conf             389999999999709932662
Q gi|254780740|r   40 ERRYIAMFDSVLAGDRLIGLV   60 (221)
Q Consensus        40 e~ry~~~i~~~l~~~~~igiv   60 (221)
                      .++.+..+.++.+..+.++.+
T Consensus        81 ~~~~~~~i~e~~~~~K~I~ai  101 (156)
T d1p80a1          81 NGDANYYLMEAYKHLKPIALA  101 (156)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEE
T ss_pred             CHHHHHHHHHHHHCCCEEEEE
T ss_conf             158999999999869969998


No 6  
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}
Probab=12.39  E-value=31  Score=12.12  Aligned_cols=33  Identities=12%  Similarity=0.093  Sum_probs=24.0

Q ss_pred             EECCCCCCCEEECCHHHHHHHHHHHHC-CCCEEEEEC
Q ss_conf             578885123431838999999999970-993266201
Q gi|254780740|r   27 LLLPGSRFSFSVFERRYIAMFDSVLAG-DRLIGLVQP   62 (221)
Q Consensus        27 VlFP~~~~pL~Ife~ry~~~i~~~l~~-~~~igiv~~   62 (221)
                      -+|+|+--|+|.|--   .+++.|.+. |+.+.+++.
T Consensus         3 AifgGsFdP~H~GHl---~li~~a~~~~D~v~v~~~~   36 (157)
T d1qjca_           3 AIYPGTFDPITNGHI---DIVTRATQMFDHVILAIAA   36 (157)
T ss_dssp             EEEEECCTTCCHHHH---HHHHHHHTTSSEEEEEEES
T ss_pred             EEEEECCCCCCHHHH---HHHHHHHHHCCEEEECCCC
T ss_conf             998024687889999---9999999857972002567


No 7  
>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}
Probab=11.95  E-value=34  Score=11.86  Aligned_cols=37  Identities=16%  Similarity=0.275  Sum_probs=21.7

Q ss_pred             CCEECCCCCCCEEE-CCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             73578885123431-83899999999997099326620
Q gi|254780740|r   25 GMLLLPGSRFSFSV-FERRYIAMFDSVLAGDRLIGLVQ   61 (221)
Q Consensus        25 ~~VlFP~~~~pL~I-fe~ry~~~i~~~l~~~~~igiv~   61 (221)
                      +.+++||..-+-+. ..++.++.+++..+.++.++.+|
T Consensus        66 DalivpGG~~~~~l~~~~~~~~~i~~~~~~~k~i~aiC  103 (170)
T d1oi4a1          66 DALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAIC  103 (170)
T ss_dssp             SEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEET
T ss_pred             EEEEECCCHHHHHHCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf             29997240466564248378999998863178145202


No 8  
>d1a0ia1 b.40.4.6 (A:241-349) ATP-dependent DNA ligase {Bacteriophage T7 [TaxId: 10760]}
Probab=10.79  E-value=37  Score=11.62  Aligned_cols=18  Identities=33%  Similarity=0.377  Sum_probs=10.8

Q ss_pred             EEEEEEEECCCCCCCCCE
Q ss_conf             001324210134666624
Q gi|254780740|r   78 IGCIGRITSFVETDDGHY   95 (221)
Q Consensus        78 vGt~a~I~~~~~~~dG~~   95 (221)
                      .|-.|+|.-.+++|||++
T Consensus        83 ~G~~~eV~yME~tpDGSL  100 (109)
T d1a0ia1          83 DGWACQISYMEETPDGSL  100 (109)
T ss_dssp             TTCEEEEEESEECTTSCE
T ss_pred             CCEEEEEEEEEECCCCCC
T ss_conf             666899999864799852


No 9  
>d1dy2a_ d.169.1.5 (A:) Endostatin domain of collagen alpha1(xv) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.23  E-value=42  Score=11.26  Aligned_cols=16  Identities=38%  Similarity=0.457  Sum_probs=13.4

Q ss_pred             CCCEEECCCCEECCCC
Q ss_conf             1553330873578885
Q gi|254780740|r   17 LLPIFPLLGMLLLPGS   32 (221)
Q Consensus        17 ~lPi~PL~~~VlFP~~   32 (221)
                      .+||.-|+|-|+|+.=
T Consensus        58 ~lPiVNlrgevLF~sW   73 (168)
T d1dy2a_          58 GLPIVNLKGQVLFNNW   73 (168)
T ss_dssp             SCCEECTTSCEEESCS
T ss_pred             CCCEEECCCCCCHHHH
T ss_conf             8872743676505409


No 10 
>d1bcga_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Buthotus judaicus), BJXTR-IT [TaxId: 6863]}
Probab=8.89  E-value=24  Score=12.78  Aligned_cols=14  Identities=29%  Similarity=0.244  Sum_probs=0.0

Q ss_pred             CCCCCCEEECCCCE
Q ss_conf             84315533308735
Q gi|254780740|r   14 LPCLLPIFPLLGML   27 (221)
Q Consensus        14 lp~~lPi~PL~~~V   27 (221)
                      ||...|+.||+|..
T Consensus        53 LPD~~pi~~l~~~~   66 (74)
T d1bcga_          53 LEDDKPIGPMKDIT   66 (74)
T ss_dssp             EETTSCBCCCCHHH
T ss_pred             CCCCCCCCCCCCHH
T ss_conf             88878325685313


Done!