RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus str. psy62] (221 letters) >gnl|CDD|32634 COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]. Length = 221 Score = 165 bits (419), Expect = 9e-42 Identities = 92/211 (43%), Positives = 117/211 (55%), Gaps = 7/211 (3%) Query: 8 YKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGF 67 Y + +DLP LP+FPL G +LLPG ++FE RY+AM + LA R G+V Sbjct: 2 YSSPDDLPLELPLFPLPGAVLLPGGLLPLNIFEPRYLAMVRTCLAEGRRFGVVLIDRGRE 61 Query: 68 LANSD-NGLSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFI 126 + LS +GC+ RIT F E DG Y++ V G RFR+LEE + +R PF Sbjct: 62 VGGGLPPELSDVGCLARITEFEELGDGRYLILVRGGQRFRVLEELADDDPYRRA-RVPFW 120 Query: 127 SDLAGND--NDGVDRVA---LLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPFS 181 DL + + VDR L+ R YL L ADWES E ASN L N L ML PF Sbjct: 121 PDLPSDPDGAEEVDRRLDALLMRAARAYLQRLELLADWESYERASNADLANRLYMLLPFD 180 Query: 182 EEEKQALLEAPDFRARAQTLIAIMKIVLARA 212 EKQALLEAPD RA+ LI +++ +LARA Sbjct: 181 PAEKQALLEAPDLPTRAERLIRLLEQLLARA 211 >gnl|CDD|145377 pfam02190, LON, ATP-dependent protease La (LON) domain. Length = 193 Score = 110 bits (278), Expect = 2e-25 Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 6/193 (3%) Query: 18 LPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQ 77 LP+ PL ++L PG VFE RYIA + L DR + +S S + L + Sbjct: 2 LPLLPLRNVVLFPGMVLPLHVFEPRYIAAIEEALESDRPFFGL-VLVSQKDPPSPDDLYE 60 Query: 78 IGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDNDGV 137 +G + RI V+ DG + V G+ RFR+LE Q + + + + + + Sbjct: 61 VGTLARIIQIVKLPDGRLKILVEGLERFRILELEEQEEPYLVAEVEDLPEEESEELEEAL 120 Query: 138 DRVALLEVFRNYLTVNNLDADWESIEEASN----EILVNSLAMLSPFSEEEKQALLEAPD 193 + + E+ + L E + + N L + +A L P S EEKQ LLE D Sbjct: 121 EA-LVKELIELLKELLPLLLPLELLLKIDNIEDPGRLADLIASLLPLSPEEKQELLETLD 179 Query: 194 FRARAQTLIAIMK 206 + R + L+ ++K Sbjct: 180 VKERLEKLLELLK 192 >gnl|CDD|30814 COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]. Length = 782 Score = 61.7 bits (150), Expect = 1e-10 Identities = 37/193 (19%), Positives = 77/193 (39%), Gaps = 4/193 (2%) Query: 18 LPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGD-RLIGLVQPAISGFLANSDNGLS 76 LP+ PL +++ PG V + I + + D + I LV + +++ L Sbjct: 10 LPVLPLRDVVVFPGMVIPLFVGREKSIKALEEAMKNDQKYILLVTQKDASTDEPTEDDLY 69 Query: 77 QIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDNDG 136 ++G + +I ++ DG + V G+ R R+ + + + + + Sbjct: 70 EVGTLAKILQILKLPDGTVKVLVEGLQRVRISKLSDEEEFFEAEIELLPDEPIDEEREIE 129 Query: 137 VDRVALLEVFRNYLTVNNL---DADWESIEEASNEILVNSLAMLSPFSEEEKQALLEAPD 193 ++L F Y +N + L +++A P EEKQ +LE D Sbjct: 130 ALVRSILSEFEEYAKLNKKIPPEELQSLNSIDDPGKLADTIAAHLPLKLEEKQEILETLD 189 Query: 194 FRARAQTLIAIMK 206 + R + L+ +++ Sbjct: 190 VKERLEKLLDLLE 202 >gnl|CDD|39361 KOG4159, KOG4159, KOG4159, Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]. Length = 398 Score = 40.7 bits (95), Expect = 3e-04 Identities = 44/207 (21%), Positives = 69/207 (33%), Gaps = 24/207 (11%) Query: 13 DLPCLLPIFPLLGMLLLPGSRFSFSVFERRY-IAMFDSVLAGDRLIGLVQPAISGFLANS 71 C P+FP+ L P VFE RY + + + GD+ G+ S Sbjct: 172 SRECESPLFPV-CTLAFPEVPCPLQVFEPRYRLMIRRLLETGDKRFGICLSDSS----KG 226 Query: 72 DNGLSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAG 131 ++IGCI I DG ++ IG RFR+L + ++ D Sbjct: 227 SGQAAEIGCILEIRKVESLGDGRSVVDSIGKSRFRVLLFSQT--DGYPVADVEYLEDRPA 284 Query: 132 NDNDGVDRVALLEVFRNYLTVNNLDADWESI--EEASNEILVNSLAMLSPFSEEEKQALL 189 +G D L + + W + +LV+ M PF E + L Sbjct: 285 VKVEGHDEPETLVELMKEVVKK--ECLWFESVADPMKGRLLVHFGCM--PFLEINFECLE 340 Query: 190 EAP----------DFRARAQTLIAIMK 206 P AR ++ M+ Sbjct: 341 SGPAWCWWKTALLPSEARLKSEFLAMR 367 >gnl|CDD|34086 COG4379, COG4379, Mu-like prophage tail protein gpP [General function prediction only]. Length = 386 Score = 30.4 bits (68), Expect = 0.43 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 27 LLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLV--QPAISGFLANSDNGLS----QIGC 80 L +P F + R A+ D V AGD + Q ++G++ + +S + Sbjct: 29 LEIPADSFDLGIGRRPEDAIPDLVRAGDSCEVKIGGQTVLTGYIDSVRQRISKGGKTLSL 88 Query: 81 IGR 83 GR Sbjct: 89 SGR 91 >gnl|CDD|37861 KOG2650, KOG2650, KOG2650, Zinc carboxypeptidase [Function unknown]. Length = 418 Score = 29.5 bits (66), Expect = 0.71 Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 154 NLDADWESIEEASNEILVNSLAMLSPFSEEEKQAL 188 N D W + AS++ + A SPFSE E +A+ Sbjct: 257 NFDFHWGGGKGASSDPCSETYAGPSPFSEPETRAV 291 >gnl|CDD|39222 KOG4019, KOG4019, KOG4019, Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms, General function prediction only]. Length = 193 Score = 28.8 bits (64), Expect = 1.1 Identities = 10/37 (27%), Positives = 15/37 (40%) Query: 157 ADWESIEEASNEILVNSLAMLSPFSEEEKQALLEAPD 193 WE IE+A + + LA + EK L + Sbjct: 118 VGWEPIEDAPPVVNQDLLAAIQKLGPGEKYELHNGTE 154 >gnl|CDD|38847 KOG3641, KOG3641, KOG3641, Zinc carboxypeptidase [Amino acid transport and metabolism]. Length = 650 Score = 28.8 bits (64), Expect = 1.3 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 12/101 (11%) Query: 101 GVCRFRLLEE--AYQLNSWRCFYIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDAD 158 G+ F + A L F I P ++ DGV ++ +R L +L+ Sbjct: 451 GILEFLVSNSPLAQGLRESYVFKIVPMLN------PDGV----IVGNYRCSLMGLDLNRM 500 Query: 159 WESIEEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQ 199 W + AS+ + ++ S L D +Q Sbjct: 501 WSTPSPASHPSIYAVKQLIQQLSNVPHSRPLGYVDLHGHSQ 541 >gnl|CDD|35700 KOG0479, KOG0479, KOG0479, DNA replication licensing factor, MCM3 component [Replication, recombination and repair]. Length = 818 Score = 28.0 bits (62), Expect = 2.2 Identities = 16/48 (33%), Positives = 23/48 (47%) Query: 143 LEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPFSEEEKQALLE 190 LE+F N L A +SI A +N+ + FS +E +A LE Sbjct: 753 LELFENGLIRLFNTAREDSISLADITESINNQSGEEKFSADEIKAALE 800 >gnl|CDD|36212 KOG0994, KOG0994, KOG0994, Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]. Length = 1758 Score = 27.8 bits (61), Expect = 2.4 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 8/60 (13%) Query: 142 LLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQTL 201 L++ R++LT DAD +SIEE + E+ LA+ P + E+ Q L + + R +L Sbjct: 1476 LIQQVRDFLT--QPDADPDSIEEVAEEV----LALELPLTPEQIQQLTG--EIQERVASL 1527 >gnl|CDD|35274 KOG0051, KOG0051, KOG0051, RNA polymerase I termination factor, Myb superfamily [Transcription]. Length = 607 Score = 27.7 bits (61), Expect = 2.6 Identities = 10/34 (29%), Positives = 15/34 (44%) Query: 134 NDGVDRVALLEVFRNYLTVNNLDADWESIEEASN 167 + G D V LLE + DW+S+ E + Sbjct: 518 SKGSDMVWLLERLSDLDLTEESPIDWKSLAEYAP 551 >gnl|CDD|38823 KOG3617, KOG3617, KOG3617, WD40 and TPR repeat-containing protein [General function prediction only]. Length = 1416 Score = 27.7 bits (61), Expect = 2.9 Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Query: 126 ISDLAGNDN-DGVDRVALLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLS 178 + D G +N D R A+L+ F Y+T+ ++DA ++SI+ ++ + +++A + Sbjct: 715 LRDFVGLENCDESTRKAMLD-FSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMC 767 >gnl|CDD|37215 KOG2004, KOG2004, KOG2004, Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]. Length = 906 Score = 27.2 bits (60), Expect = 3.3 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 11/139 (7%) Query: 77 QIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEE----AYQLNSWRCFYIAPFISDLAGN 132 +I + I+ E + Y + V G+ R + E ++ S + + Sbjct: 153 RITELAPISEGKEDAEVEYSLLVTGLSRLNITEMKEEKEAEVLSVEVENVKDEPFKK--D 210 Query: 133 DNDGVDRVALLEVFRNYLTVNNLDAD-----WESIEEASNEILVNSLAMLSPFSEEEKQA 187 + +L+ R+ + VN+L + + I E + L + A +S E Q Sbjct: 211 EEIKALTSEILKTLRDIIAVNSLFREQVATLSQLIVEDNPIKLADFGAAISGAEFHELQE 270 Query: 188 LLEAPDFRARAQTLIAIMK 206 +LE D R + + ++K Sbjct: 271 VLEETDIEKRLEKALELLK 289 >gnl|CDD|37353 KOG2142, KOG2142, KOG2142, Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]. Length = 728 Score = 27.0 bits (59), Expect = 4.0 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 4/68 (5%) Query: 56 LIGLVQPAISGFLANSDNGLSQIGCIGRITSFVETDDGHYIM--TVIGVCRFRLLEEAYQ 113 L + ++ G A S+ +I RI + + Y++ T V F L E+Y Sbjct: 159 EANLSEHSLFGGAAQSNFEGDKIKL--RIMDRLNIPESEYVLLDTASRVSAFPLDAESYP 216 Query: 114 LNSWRCFY 121 + Sbjct: 217 FDFNPKLL 224 >gnl|CDD|35989 KOG0770, KOG0770, KOG0770, Predicted mitochondrial carrier protein [Energy production and conversion]. Length = 353 Score = 26.5 bits (58), Expect = 5.2 Identities = 9/27 (33%), Positives = 14/27 (51%) Query: 106 RLLEEAYQLNSWRCFYIAPFISDLAGN 132 R +EE++ L IA F+ D G+ Sbjct: 116 RWIEESHPLAGTWAHLIAGFVGDTLGS 142 >gnl|CDD|110101 pfam01076, Mob_Pre, Plasmid recombination enzyme. With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation). Length = 196 Score = 26.1 bits (58), Expect = 7.3 Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 2/30 (6%) Query: 147 RNYLTVNNLDADWESIEEASNEILVNSLAM 176 R T +N D D E N LVN + Sbjct: 26 RENETYDNKDIDPERSGL--NYDLVNDKTI 53 >gnl|CDD|32406 COG2224, AceA, Isocitrate lyase [Energy production and conversion]. Length = 433 Score = 26.0 bits (57), Expect = 8.1 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 138 DRVALLEVFRNYLTVNNLDAD--WESIEEASNEILVNSLAMLSPF-SEEEKQALLEA 191 D V L T+ L A WE + E E VN+L L+ + + +A ++A Sbjct: 32 DVVKLRGSVPIEYTLARLGAAKLWELLHELFKEKYVNTLGALTGGQAVQMAKAGIKA 88 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.325 0.141 0.417 Gapped Lambda K H 0.267 0.0761 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,716,780 Number of extensions: 141102 Number of successful extensions: 401 Number of sequences better than 10.0: 1 Number of HSP's gapped: 395 Number of HSP's successfully gapped: 19 Length of query: 221 Length of database: 6,263,737 Length adjustment: 90 Effective length of query: 131 Effective length of database: 4,318,927 Effective search space: 565779437 Effective search space used: 565779437 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 55 (24.9 bits)