RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain
protein [Candidatus Liberibacter asiaticus str. psy62]
(221 letters)
>gnl|CDD|32634 COG2802, COG2802, Uncharacterized protein, similar to the
N-terminal domain of Lon protease [General function
prediction only].
Length = 221
Score = 165 bits (419), Expect = 9e-42
Identities = 92/211 (43%), Positives = 117/211 (55%), Gaps = 7/211 (3%)
Query: 8 YKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGF 67
Y + +DLP LP+FPL G +LLPG ++FE RY+AM + LA R G+V
Sbjct: 2 YSSPDDLPLELPLFPLPGAVLLPGGLLPLNIFEPRYLAMVRTCLAEGRRFGVVLIDRGRE 61
Query: 68 LANSD-NGLSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFI 126
+ LS +GC+ RIT F E DG Y++ V G RFR+LEE + +R PF
Sbjct: 62 VGGGLPPELSDVGCLARITEFEELGDGRYLILVRGGQRFRVLEELADDDPYRRA-RVPFW 120
Query: 127 SDLAGND--NDGVDRVA---LLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPFS 181
DL + + VDR L+ R YL L ADWES E ASN L N L ML PF
Sbjct: 121 PDLPSDPDGAEEVDRRLDALLMRAARAYLQRLELLADWESYERASNADLANRLYMLLPFD 180
Query: 182 EEEKQALLEAPDFRARAQTLIAIMKIVLARA 212
EKQALLEAPD RA+ LI +++ +LARA
Sbjct: 181 PAEKQALLEAPDLPTRAERLIRLLEQLLARA 211
>gnl|CDD|145377 pfam02190, LON, ATP-dependent protease La (LON) domain.
Length = 193
Score = 110 bits (278), Expect = 2e-25
Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 6/193 (3%)
Query: 18 LPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQ 77
LP+ PL ++L PG VFE RYIA + L DR + +S S + L +
Sbjct: 2 LPLLPLRNVVLFPGMVLPLHVFEPRYIAAIEEALESDRPFFGL-VLVSQKDPPSPDDLYE 60
Query: 78 IGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDNDGV 137
+G + RI V+ DG + V G+ RFR+LE Q + + + + + +
Sbjct: 61 VGTLARIIQIVKLPDGRLKILVEGLERFRILELEEQEEPYLVAEVEDLPEEESEELEEAL 120
Query: 138 DRVALLEVFRNYLTVNNLDADWESIEEASN----EILVNSLAMLSPFSEEEKQALLEAPD 193
+ + E+ + L E + + N L + +A L P S EEKQ LLE D
Sbjct: 121 EA-LVKELIELLKELLPLLLPLELLLKIDNIEDPGRLADLIASLLPLSPEEKQELLETLD 179
Query: 194 FRARAQTLIAIMK 206
+ R + L+ ++K
Sbjct: 180 VKERLEKLLELLK 192
>gnl|CDD|30814 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 61.7 bits (150), Expect = 1e-10
Identities = 37/193 (19%), Positives = 77/193 (39%), Gaps = 4/193 (2%)
Query: 18 LPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGD-RLIGLVQPAISGFLANSDNGLS 76
LP+ PL +++ PG V + I + + D + I LV + +++ L
Sbjct: 10 LPVLPLRDVVVFPGMVIPLFVGREKSIKALEEAMKNDQKYILLVTQKDASTDEPTEDDLY 69
Query: 77 QIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDNDG 136
++G + +I ++ DG + V G+ R R+ + + + + +
Sbjct: 70 EVGTLAKILQILKLPDGTVKVLVEGLQRVRISKLSDEEEFFEAEIELLPDEPIDEEREIE 129
Query: 137 VDRVALLEVFRNYLTVNNL---DADWESIEEASNEILVNSLAMLSPFSEEEKQALLEAPD 193
++L F Y +N + L +++A P EEKQ +LE D
Sbjct: 130 ALVRSILSEFEEYAKLNKKIPPEELQSLNSIDDPGKLADTIAAHLPLKLEEKQEILETLD 189
Query: 194 FRARAQTLIAIMK 206
+ R + L+ +++
Sbjct: 190 VKERLEKLLDLLE 202
>gnl|CDD|39361 KOG4159, KOG4159, KOG4159, Predicted E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 398
Score = 40.7 bits (95), Expect = 3e-04
Identities = 44/207 (21%), Positives = 69/207 (33%), Gaps = 24/207 (11%)
Query: 13 DLPCLLPIFPLLGMLLLPGSRFSFSVFERRY-IAMFDSVLAGDRLIGLVQPAISGFLANS 71
C P+FP+ L P VFE RY + + + GD+ G+ S
Sbjct: 172 SRECESPLFPV-CTLAFPEVPCPLQVFEPRYRLMIRRLLETGDKRFGICLSDSS----KG 226
Query: 72 DNGLSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAG 131
++IGCI I DG ++ IG RFR+L + ++ D
Sbjct: 227 SGQAAEIGCILEIRKVESLGDGRSVVDSIGKSRFRVLLFSQT--DGYPVADVEYLEDRPA 284
Query: 132 NDNDGVDRVALLEVFRNYLTVNNLDADWESI--EEASNEILVNSLAMLSPFSEEEKQALL 189
+G D L + + W + +LV+ M PF E + L
Sbjct: 285 VKVEGHDEPETLVELMKEVVKK--ECLWFESVADPMKGRLLVHFGCM--PFLEINFECLE 340
Query: 190 EAP----------DFRARAQTLIAIMK 206
P AR ++ M+
Sbjct: 341 SGPAWCWWKTALLPSEARLKSEFLAMR 367
>gnl|CDD|34086 COG4379, COG4379, Mu-like prophage tail protein gpP [General
function prediction only].
Length = 386
Score = 30.4 bits (68), Expect = 0.43
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 27 LLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLV--QPAISGFLANSDNGLS----QIGC 80
L +P F + R A+ D V AGD + Q ++G++ + +S +
Sbjct: 29 LEIPADSFDLGIGRRPEDAIPDLVRAGDSCEVKIGGQTVLTGYIDSVRQRISKGGKTLSL 88
Query: 81 IGR 83
GR
Sbjct: 89 SGR 91
>gnl|CDD|37861 KOG2650, KOG2650, KOG2650, Zinc carboxypeptidase [Function
unknown].
Length = 418
Score = 29.5 bits (66), Expect = 0.71
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 154 NLDADWESIEEASNEILVNSLAMLSPFSEEEKQAL 188
N D W + AS++ + A SPFSE E +A+
Sbjct: 257 NFDFHWGGGKGASSDPCSETYAGPSPFSEPETRAV 291
>gnl|CDD|39222 KOG4019, KOG4019, KOG4019, Calcineurin-mediated signaling pathway
inhibitor DSCR1 [Signal transduction mechanisms, General
function prediction only].
Length = 193
Score = 28.8 bits (64), Expect = 1.1
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 157 ADWESIEEASNEILVNSLAMLSPFSEEEKQALLEAPD 193
WE IE+A + + LA + EK L +
Sbjct: 118 VGWEPIEDAPPVVNQDLLAAIQKLGPGEKYELHNGTE 154
>gnl|CDD|38847 KOG3641, KOG3641, KOG3641, Zinc carboxypeptidase [Amino acid
transport and metabolism].
Length = 650
Score = 28.8 bits (64), Expect = 1.3
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 101 GVCRFRLLEE--AYQLNSWRCFYIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDAD 158
G+ F + A L F I P ++ DGV ++ +R L +L+
Sbjct: 451 GILEFLVSNSPLAQGLRESYVFKIVPMLN------PDGV----IVGNYRCSLMGLDLNRM 500
Query: 159 WESIEEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQ 199
W + AS+ + ++ S L D +Q
Sbjct: 501 WSTPSPASHPSIYAVKQLIQQLSNVPHSRPLGYVDLHGHSQ 541
>gnl|CDD|35700 KOG0479, KOG0479, KOG0479, DNA replication licensing factor, MCM3
component [Replication, recombination and repair].
Length = 818
Score = 28.0 bits (62), Expect = 2.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 143 LEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPFSEEEKQALLE 190
LE+F N L A +SI A +N+ + FS +E +A LE
Sbjct: 753 LELFENGLIRLFNTAREDSISLADITESINNQSGEEKFSADEIKAALE 800
>gnl|CDD|36212 KOG0994, KOG0994, KOG0994, Extracellular matrix glycoprotein Laminin
subunit beta [Extracellular structures].
Length = 1758
Score = 27.8 bits (61), Expect = 2.4
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 142 LLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQTL 201
L++ R++LT DAD +SIEE + E+ LA+ P + E+ Q L + + R +L
Sbjct: 1476 LIQQVRDFLT--QPDADPDSIEEVAEEV----LALELPLTPEQIQQLTG--EIQERVASL 1527
>gnl|CDD|35274 KOG0051, KOG0051, KOG0051, RNA polymerase I termination factor, Myb
superfamily [Transcription].
Length = 607
Score = 27.7 bits (61), Expect = 2.6
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 134 NDGVDRVALLEVFRNYLTVNNLDADWESIEEASN 167
+ G D V LLE + DW+S+ E +
Sbjct: 518 SKGSDMVWLLERLSDLDLTEESPIDWKSLAEYAP 551
>gnl|CDD|38823 KOG3617, KOG3617, KOG3617, WD40 and TPR repeat-containing protein
[General function prediction only].
Length = 1416
Score = 27.7 bits (61), Expect = 2.9
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 126 ISDLAGNDN-DGVDRVALLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLS 178
+ D G +N D R A+L+ F Y+T+ ++DA ++SI+ ++ + +++A +
Sbjct: 715 LRDFVGLENCDESTRKAMLD-FSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMC 767
>gnl|CDD|37215 KOG2004, KOG2004, KOG2004, Mitochondrial ATP-dependent protease
PIM1/LON [Posttranslational modification, protein
turnover, chaperones].
Length = 906
Score = 27.2 bits (60), Expect = 3.3
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 11/139 (7%)
Query: 77 QIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEE----AYQLNSWRCFYIAPFISDLAGN 132
+I + I+ E + Y + V G+ R + E ++ S + +
Sbjct: 153 RITELAPISEGKEDAEVEYSLLVTGLSRLNITEMKEEKEAEVLSVEVENVKDEPFKK--D 210
Query: 133 DNDGVDRVALLEVFRNYLTVNNLDAD-----WESIEEASNEILVNSLAMLSPFSEEEKQA 187
+ +L+ R+ + VN+L + + I E + L + A +S E Q
Sbjct: 211 EEIKALTSEILKTLRDIIAVNSLFREQVATLSQLIVEDNPIKLADFGAAISGAEFHELQE 270
Query: 188 LLEAPDFRARAQTLIAIMK 206
+LE D R + + ++K
Sbjct: 271 VLEETDIEKRLEKALELLK 289
>gnl|CDD|37353 KOG2142, KOG2142, KOG2142, Molybdenum cofactor sulfurase [Coenzyme
transport and metabolism].
Length = 728
Score = 27.0 bits (59), Expect = 4.0
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 56 LIGLVQPAISGFLANSDNGLSQIGCIGRITSFVETDDGHYIM--TVIGVCRFRLLEEAYQ 113
L + ++ G A S+ +I RI + + Y++ T V F L E+Y
Sbjct: 159 EANLSEHSLFGGAAQSNFEGDKIKL--RIMDRLNIPESEYVLLDTASRVSAFPLDAESYP 216
Query: 114 LNSWRCFY 121
+
Sbjct: 217 FDFNPKLL 224
>gnl|CDD|35989 KOG0770, KOG0770, KOG0770, Predicted mitochondrial carrier protein
[Energy production and conversion].
Length = 353
Score = 26.5 bits (58), Expect = 5.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 106 RLLEEAYQLNSWRCFYIAPFISDLAGN 132
R +EE++ L IA F+ D G+
Sbjct: 116 RWIEESHPLAGTWAHLIAGFVGDTLGS 142
>gnl|CDD|110101 pfam01076, Mob_Pre, Plasmid recombination enzyme. With some
plasmids, recombination can occur in a site specific
manner that is independent of RecA. In such cases, the
recombination event requires another protein called Pre.
Pre is a plasmid recombination enzyme. This protein is
also known as Mob (conjugative mobilisation).
Length = 196
Score = 26.1 bits (58), Expect = 7.3
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 147 RNYLTVNNLDADWESIEEASNEILVNSLAM 176
R T +N D D E N LVN +
Sbjct: 26 RENETYDNKDIDPERSGL--NYDLVNDKTI 53
>gnl|CDD|32406 COG2224, AceA, Isocitrate lyase [Energy production and conversion].
Length = 433
Score = 26.0 bits (57), Expect = 8.1
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 138 DRVALLEVFRNYLTVNNLDAD--WESIEEASNEILVNSLAMLSPF-SEEEKQALLEA 191
D V L T+ L A WE + E E VN+L L+ + + +A ++A
Sbjct: 32 DVVKLRGSVPIEYTLARLGAAKLWELLHELFKEKYVNTLGALTGGQAVQMAKAGIKA 88
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.325 0.141 0.417
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,716,780
Number of extensions: 141102
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 19
Length of query: 221
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 131
Effective length of database: 4,318,927
Effective search space: 565779437
Effective search space used: 565779437
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.9 bits)