RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain
protein [Candidatus Liberibacter asiaticus str. psy62]
(221 letters)
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural
genomics, PSI, protein structure initiative; 2.60A
{Bordetella parapertussis 12822} (A:)
Length = 210
Score = 99.4 bits (247), Expect = 3e-22
Identities = 33/196 (16%), Positives = 54/196 (27%), Gaps = 9/196 (4%)
Query: 18 LPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAI--SGFLANSDNGL 75
+P+FPL L P VFE RY+ +A G+V + L
Sbjct: 4 IPLFPL-SNALFPAGVLRLRVFEIRYLDXVRRCIADGSEFGVVVLEQGTEVRRPDGREVL 62
Query: 76 SQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRC--FYIAPFISDLAGND 133
++ G RI + + G RFRL P + L
Sbjct: 63 ARAGTXARIDHWEAPXPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPP 122
Query: 134 NDGVDRVALLEVFRNYLTVN---NLDADWESIEEASNEILVNSLAMLSPFSEEEKQALLE 190
AL + ++ + + A +K LL
Sbjct: 123 ELARSASALGRLIARLQREGVPPHIXPXAAPFRLDDCGWVADRWAEXLSLPPADKARLLL 182
Query: 191 APDFRARAQTLIAIMK 206
R + + A++
Sbjct: 183 L-PPLDRLREIDAVLA 197
>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase;
2.03A {Escherichia coli} (A:)
Length = 125
Score = 91.5 bits (227), Expect = 7e-20
Identities = 21/110 (19%), Positives = 40/110 (36%)
Query: 1 MKIGNTIYKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLV 60
M + +P+ PL +++ P V + I ++ + D+ I LV
Sbjct: 1 MHHHHHHMNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLV 60
Query: 61 QPAISGFLANSDNGLSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEE 110
+ N L +G + I ++ DG + V G+ R R+
Sbjct: 61 AQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISAL 110
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3;
transcription, structural genomics, NPPSFA; NMR {Homo
sapiens} (A:)
Length = 75
Score = 29.1 bits (65), Expect = 0.46
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 179 PFSEEEKQALLEA----PDFRARAQTLIAIMKIVLARAYTHCENRLQ 221
++ EE++ L + P ++ I + R +++Q
Sbjct: 10 LWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQ 56
>1tlj_A Hypothetical UPF0130 protein SSO0622; midwest center for
structural genomics, PSI, protein structure initiative,
MCSG; 2.80A {Sulfolobus solfataricus} (A:)
Length = 213
Score = 28.3 bits (63), Expect = 0.76
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 43 YIAMFD-------SVLAGDRLIGLVQPAISGFLANSDNGLSQI----GCIGRITSFVETD 91
++ +++ + + D+ IG + P I GFL + + C GRIT
Sbjct: 2 HMLVWEELREKALNKIYHDKEIGYLDPDILGFLLAFYRNRNDVYTQSSCSGRITIVDAEM 61
Query: 92 DGH 94
Sbjct: 62 PWD 64
>2bvl_A Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.2A
{Clostridium difficile} (A:136-235,A:504-543)
Length = 140
Score = 28.4 bits (63), Expect = 0.88
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 162 IEEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQ 199
IEE+ N+I NS +S +E+E +L D RA+AQ
Sbjct: 90 IEESLNKITQNSKTNISQSTEQEMASLWSFDDARAKAQ 127
>1qsa_A Protein (soluble lytic transglycosylase SLT70);
alpha-superhelix, transferase; HET: GOL; 1.65A
{Escherichia coli} (A:372-446)
Length = 75
Score = 25.5 bits (56), Expect = 6.9
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 182 EEEKQALLEAPDFRARAQTLIAIMKIVLARA 212
+ AL + P+ AR + L+ AR+
Sbjct: 2 QNVDSALTQGPEM-ARVRELMYWNLDNTARS 31
>3iee_A Putative exported protein; YP_212931.1, hypothetical protein
BF3319 from bacteroides fragilis, structural genomics;
HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
(A:1-166)
Length = 166
Score = 25.3 bits (55), Expect = 7.0
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 146 FRNYLTVNN-------LDADWESIEEASNEILVNSLAMLSPFSEEEKQALL 189
+ +YL + LD +++ + S E N +LSPF+E+ + LL
Sbjct: 114 YLSYLKKKDVTNAKKLLDVNYQLSTQXS-EYKQNIFDILSPFTEQAELVLL 163
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, cytoplasm, ligase,
metal-binding, nucleotide-binding; HET: CIT; 1.40A
{Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
(A:1-130,A:268-400,A:544-560)
Length = 280
Score = 25.5 bits (55), Expect = 7.0
Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 5/99 (5%)
Query: 74 GLSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGND 133
G + + + + + V + + A S FI +
Sbjct: 170 GKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRG-----TFIKASTWLN 224
Query: 134 NDGVDRVALLEVFRNYLTVNNLDADWESIEEASNEILVN 172
+ D + + ++++D + E + N +VN
Sbjct: 225 HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN 263
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex,
nuclear transport, exportin, RAN GTPase, protein
transport; HET: GTP; 2.0A {Saccharomyces cerevisiae}
(C:467-588)
Length = 122
Score = 25.0 bits (55), Expect = 9.0
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 42 RYIAMFDSVLAGDRLIGLVQPAISGFLANSDN 73
+YI F + L +LI L+ P ++ FL +
Sbjct: 14 KYIYTFRNQLTKAQLIELM-PILATFLQTDEY 44
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex,
recombination; HET: DNA; 2.80A {Vibrio cholerae o1
biovar eltor str} (A:95-144,A:243-320)
Length = 128
Score = 24.8 bits (54), Expect = 9.6
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 179 PFSEEEKQALLEAPDFRARA 198
+ +E + LLE D + +
Sbjct: 11 VLTRDEIRRLLEIVDPKHQL 30
>2guj_A Phage-like element PBSX protein XKDM; X-RAY, SR353,
structural genomics, PSI, protein structure initiative;
3.00A {Bacillus subtilis} (A:)
Length = 155
Score = 24.6 bits (54), Expect = 9.6
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 134 NDGVDRVALLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPFSE 182
G +RV L +V + + +LD D E++EE + S+
Sbjct: 98 GRGTERVTLYDVNFDSAKIASLDVDSEALEE-EVPFTFEDFDVPEKLSD 145
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.325 0.141 0.417
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,697,257
Number of extensions: 74618
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 12
Length of query: 221
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 136
Effective length of database: 2,082,624
Effective search space: 283236864
Effective search space used: 283236864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)