RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus str. psy62] (221 letters) >1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.60A {Bordetella parapertussis 12822} (A:) Length = 210 Score = 99.4 bits (247), Expect = 3e-22 Identities = 33/196 (16%), Positives = 54/196 (27%), Gaps = 9/196 (4%) Query: 18 LPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAI--SGFLANSDNGL 75 +P+FPL L P VFE RY+ +A G+V + L Sbjct: 4 IPLFPL-SNALFPAGVLRLRVFEIRYLDXVRRCIADGSEFGVVVLEQGTEVRRPDGREVL 62 Query: 76 SQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRC--FYIAPFISDLAGND 133 ++ G RI + + G RFRL P + L Sbjct: 63 ARAGTXARIDHWEAPXPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPP 122 Query: 134 NDGVDRVALLEVFRNYLTVN---NLDADWESIEEASNEILVNSLAMLSPFSEEEKQALLE 190 AL + ++ + + A +K LL Sbjct: 123 ELARSASALGRLIARLQREGVPPHIXPXAAPFRLDDCGWVADRWAEXLSLPPADKARLLL 182 Query: 191 APDFRARAQTLIAIMK 206 R + + A++ Sbjct: 183 L-PPLDRLREIDAVLA 197 >2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} (A:) Length = 125 Score = 91.5 bits (227), Expect = 7e-20 Identities = 21/110 (19%), Positives = 40/110 (36%) Query: 1 MKIGNTIYKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLV 60 M + +P+ PL +++ P V + I ++ + D+ I LV Sbjct: 1 MHHHHHHMNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLV 60 Query: 61 QPAISGFLANSDNGLSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEE 110 + N L +G + I ++ DG + V G+ R R+ Sbjct: 61 AQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISAL 110 >2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Length = 75 Score = 29.1 bits (65), Expect = 0.46 Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 4/47 (8%) Query: 179 PFSEEEKQALLEA----PDFRARAQTLIAIMKIVLARAYTHCENRLQ 221 ++ EE++ L + P ++ I + R +++Q Sbjct: 10 LWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQ 56 >1tlj_A Hypothetical UPF0130 protein SSO0622; midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.80A {Sulfolobus solfataricus} (A:) Length = 213 Score = 28.3 bits (63), Expect = 0.76 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 11/63 (17%) Query: 43 YIAMFD-------SVLAGDRLIGLVQPAISGFLANSDNGLSQI----GCIGRITSFVETD 91 ++ +++ + + D+ IG + P I GFL + + C GRIT Sbjct: 2 HMLVWEELREKALNKIYHDKEIGYLDPDILGFLLAFYRNRNDVYTQSSCSGRITIVDAEM 61 Query: 92 DGH 94 Sbjct: 62 PWD 64 >2bvl_A Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.2A {Clostridium difficile} (A:136-235,A:504-543) Length = 140 Score = 28.4 bits (63), Expect = 0.88 Identities = 16/38 (42%), Positives = 23/38 (60%) Query: 162 IEEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQ 199 IEE+ N+I NS +S +E+E +L D RA+AQ Sbjct: 90 IEESLNKITQNSKTNISQSTEQEMASLWSFDDARAKAQ 127 >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} (A:372-446) Length = 75 Score = 25.5 bits (56), Expect = 6.9 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%) Query: 182 EEEKQALLEAPDFRARAQTLIAIMKIVLARA 212 + AL + P+ AR + L+ AR+ Sbjct: 2 QNVDSALTQGPEM-ARVRELMYWNLDNTARS 31 >3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides fragilis, structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343} (A:1-166) Length = 166 Score = 25.3 bits (55), Expect = 7.0 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 8/51 (15%) Query: 146 FRNYLTVNN-------LDADWESIEEASNEILVNSLAMLSPFSEEEKQALL 189 + +YL + LD +++ + S E N +LSPF+E+ + LL Sbjct: 114 YLSYLKKKDVTNAKKLLDVNYQLSTQXS-EYKQNIFDILSPFTEQAELVLL 163 >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A (A:1-130,A:268-400,A:544-560) Length = 280 Score = 25.5 bits (55), Expect = 7.0 Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 5/99 (5%) Query: 74 GLSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGND 133 G + + + + + V + + A S FI + Sbjct: 170 GKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRG-----TFIKASTWLN 224 Query: 134 NDGVDRVALLEVFRNYLTVNNLDADWESIEEASNEILVN 172 + D + + ++++D + E + N +VN Sbjct: 225 HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN 263 >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} (C:467-588) Length = 122 Score = 25.0 bits (55), Expect = 9.0 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Query: 42 RYIAMFDSVLAGDRLIGLVQPAISGFLANSDN 73 +YI F + L +LI L+ P ++ FL + Sbjct: 14 KYIYTFRNQLTKAQLIELM-PILATFLQTDEY 44 >2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:95-144,A:243-320) Length = 128 Score = 24.8 bits (54), Expect = 9.6 Identities = 5/20 (25%), Positives = 10/20 (50%) Query: 179 PFSEEEKQALLEAPDFRARA 198 + +E + LLE D + + Sbjct: 11 VLTRDEIRRLLEIVDPKHQL 30 >2guj_A Phage-like element PBSX protein XKDM; X-RAY, SR353, structural genomics, PSI, protein structure initiative; 3.00A {Bacillus subtilis} (A:) Length = 155 Score = 24.6 bits (54), Expect = 9.6 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 134 NDGVDRVALLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPFSE 182 G +RV L +V + + +LD D E++EE + S+ Sbjct: 98 GRGTERVTLYDVNFDSAKIASLDVDSEALEE-EVPFTFEDFDVPEKLSD 145 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.325 0.141 0.417 Gapped Lambda K H 0.267 0.0597 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,697,257 Number of extensions: 74618 Number of successful extensions: 245 Number of sequences better than 10.0: 1 Number of HSP's gapped: 242 Number of HSP's successfully gapped: 12 Length of query: 221 Length of database: 4,956,049 Length adjustment: 85 Effective length of query: 136 Effective length of database: 2,082,624 Effective search space: 283236864 Effective search space used: 283236864 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 53 (24.5 bits)