RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus str. psy62] (221 letters) >d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347 {Bordetella parapertussis [TaxId: 519]} Length = 197 Score = 88.8 bits (219), Expect = 3e-19 Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 9/195 (4%) Query: 18 LPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLA--NSDNGL 75 +P+FPL L P VFE RY+ M +A G+V + + L Sbjct: 3 IPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVL 61 Query: 76 SQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDND 135 ++ G + RI + + G RFRL P D Sbjct: 62 ARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPP 121 Query: 136 GVDRVA-----LLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPFSEEEKQALLE 190 + R A L+ + ++ + + A + +K LL Sbjct: 122 ELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCGWVADRWAEMLSLPPADKARLLL 181 Query: 191 APDFRARAQTLIAIM 205 P R + + A++ Sbjct: 182 LPP-LDRLREIDAVL 195 >d2anea1 b.122.1.10 (A:8-117) ATP-dependent protease La (Lon), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 110 Score = 66.3 bits (161), Expect = 2e-12 Identities = 20/93 (21%), Positives = 38/93 (40%) Query: 18 LPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQ 77 +P+ PL +++ P V + I ++ + D+ I LV + N L Sbjct: 4 IPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFT 63 Query: 78 IGCIGRITSFVETDDGHYIMTVIGVCRFRLLEE 110 +G + I ++ DG + V G+ R R+ Sbjct: 64 VGTVASILQMLKLPDGTVKVLVEGLQRARISAL 96 >d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]} Length = 722 Score = 25.6 bits (56), Expect = 3.3 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 11/71 (15%) Query: 8 YKNREDLPCLLPIFPLL-GMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISG 66 Y + + + + G L +P S E +Y S G ++ S Sbjct: 10 YFSDLNFQAPMVVTSSTTGDLSIPSSELENIPSENQYFQ---SA----IWSGFIKVKKSD 62 Query: 67 ---FLANSDNG 74 F ++DN Sbjct: 63 EYTFATSADNH 73 >d1tlja_ d.282.1.1 (A:) Hypothetical protein SSo0622 {Sulfolobus solfataricus [TaxId: 2287]} Length = 189 Score = 25.1 bits (55), Expect = 5.1 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%) Query: 51 LAGDRLIGLVQPAISGFLANSDNGLSQI----GCIGRITSFVETDDGH 94 + D+ IG + P I GFL + + C GRIT Sbjct: 14 IYHDKEIGYLDPDILGFLLAFYRNRNDVYTQSSCSGRITIVDAEMPWD 61 >d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 579 Score = 24.4 bits (52), Expect = 7.9 Identities = 29/196 (14%), Positives = 73/196 (37%), Gaps = 24/196 (12%) Query: 41 RRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGCIGRITSFVETDDGHYIMTVI 100 ++ I +F + L + I LA+ N ++Q+ + + + D ++ + Sbjct: 315 KQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN-IAQV--LAELKEYATEVDVDFVRKAV 371 Query: 101 GVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDNDGV---DRVALLEVFRNY--LTVNNL 155 + A ++ + + DL + V V + ++FR Y + + Sbjct: 372 ----RAIGRCAIKVEQSAERCV-STLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESII 426 Query: 156 DADWESIEE-ASNEILVNSLAMLSPFSEEEKQA--LLEA-------PDFRARAQTLIAIM 205 E+++ + + ++ ++E A LLE+ + + L AI+ Sbjct: 427 ATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIV 486 Query: 206 KIVLARAYTHCENRLQ 221 K+ L + + + +Q Sbjct: 487 KLFLKKP-SETQELVQ 501 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.325 0.141 0.417 Gapped Lambda K H 0.267 0.0500 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 834,634 Number of extensions: 38107 Number of successful extensions: 134 Number of sequences better than 10.0: 1 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 9 Length of query: 221 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 139 Effective length of database: 1,281,736 Effective search space: 178161304 Effective search space used: 178161304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 51 (24.0 bits)