RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain
protein [Candidatus Liberibacter asiaticus str. psy62]
         (221 letters)



>d1zboa1 b.122.1.10 (A:2-198) Hypothetical protein BPP1347
           {Bordetella parapertussis [TaxId: 519]}
          Length = 197

 Score = 88.8 bits (219), Expect = 3e-19
 Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 9/195 (4%)

Query: 18  LPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLA--NSDNGL 75
           +P+FPL    L P       VFE RY+ M    +A     G+V       +   +    L
Sbjct: 3   IPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVL 61

Query: 76  SQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDND 135
           ++ G + RI  +         +   G  RFRL                P   D       
Sbjct: 62  ARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPP 121

Query: 136 GVDRVA-----LLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPFSEEEKQALLE 190
            + R A     L+   +      ++              + +  A +      +K  LL 
Sbjct: 122 ELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCGWVADRWAEMLSLPPADKARLLL 181

Query: 191 APDFRARAQTLIAIM 205
            P    R + + A++
Sbjct: 182 LPP-LDRLREIDAVL 195


>d2anea1 b.122.1.10 (A:8-117) ATP-dependent protease La (Lon),
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 110

 Score = 66.3 bits (161), Expect = 2e-12
 Identities = 20/93 (21%), Positives = 38/93 (40%)

Query: 18  LPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQ 77
           +P+ PL  +++ P       V   + I   ++ +  D+ I LV    +       N L  
Sbjct: 4   IPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFT 63

Query: 78  IGCIGRITSFVETDDGHYIMTVIGVCRFRLLEE 110
           +G +  I   ++  DG   + V G+ R R+   
Sbjct: 64  VGTVASILQMLKLPDGTVKVLVEGLQRARISAL 96


>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax
          bacillus (Bacillus anthracis) [TaxId: 1392]}
          Length = 722

 Score = 25.6 bits (56), Expect = 3.3
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 11/71 (15%)

Query: 8  YKNREDLPCLLPIFPLL-GMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISG 66
          Y +  +    + +     G L +P S       E +Y     S        G ++   S 
Sbjct: 10 YFSDLNFQAPMVVTSSTTGDLSIPSSELENIPSENQYFQ---SA----IWSGFIKVKKSD 62

Query: 67 ---FLANSDNG 74
             F  ++DN 
Sbjct: 63 EYTFATSADNH 73


>d1tlja_ d.282.1.1 (A:) Hypothetical protein SSo0622 {Sulfolobus
          solfataricus [TaxId: 2287]}
          Length = 189

 Score = 25.1 bits (55), Expect = 5.1
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 51 LAGDRLIGLVQPAISGFLANSDNGLSQI----GCIGRITSFVETDDGH 94
          +  D+ IG + P I GFL       + +     C GRIT         
Sbjct: 14 IYHDKEIGYLDPDILGFLLAFYRNRNDVYTQSSCSGRITIVDAEMPWD 61


>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 24.4 bits (52), Expect = 7.9
 Identities = 29/196 (14%), Positives = 73/196 (37%), Gaps = 24/196 (12%)

Query: 41  RRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGCIGRITSFVETDDGHYIMTVI 100
           ++ I +F         + L +  I   LA+  N ++Q+  +  +  +    D  ++   +
Sbjct: 315 KQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN-IAQV--LAELKEYATEVDVDFVRKAV 371

Query: 101 GVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDNDGV---DRVALLEVFRNY--LTVNNL 155
                 +   A ++       +   + DL     + V     V + ++FR Y     + +
Sbjct: 372 ----RAIGRCAIKVEQSAERCV-STLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESII 426

Query: 156 DADWESIEE-ASNEILVNSLAMLSPFSEEEKQA--LLEA-------PDFRARAQTLIAIM 205
               E+++     +     + ++  ++E    A  LLE+          + +   L AI+
Sbjct: 427 ATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIV 486

Query: 206 KIVLARAYTHCENRLQ 221
           K+ L +  +  +  +Q
Sbjct: 487 KLFLKKP-SETQELVQ 501


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.417 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 834,634
Number of extensions: 38107
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 9
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)