BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain
protein [Candidatus Liberibacter asiaticus str. psy62]
         (221 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 221

 Score =  453 bits (1165), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MKIGNTIYKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLV 60
           MKIGNTIYKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLV
Sbjct: 1   MKIGNTIYKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLV 60

Query: 61  QPAISGFLANSDNGLSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCF 120
           QPAISGFLANSDNGLSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCF
Sbjct: 61  QPAISGFLANSDNGLSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCF 120

Query: 121 YIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPF 180
           YIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPF
Sbjct: 121 YIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPF 180

Query: 181 SEEEKQALLEAPDFRARAQTLIAIMKIVLARAYTHCENRLQ 221
           SEEEKQALLEAPDFRARAQTLIAIMKIVLARAYTHCENRLQ
Sbjct: 181 SEEEKQALLEAPDFRARAQTLIAIMKIVLARAYTHCENRLQ 221


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 28.5 bits (62), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 30/206 (14%)

Query: 17  LLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLS 76
           + P+ PL  +++ P       V   + +   D  +   + I LV    +   +N +N ++
Sbjct: 27  IYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNSHKKIILV----TQMNSNDENPIA 82

Query: 77  ----QIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGN 132
               +IG I  I   +   DG   + V G  R R++E        R  ++      L   
Sbjct: 83  SSVYRIGTIVDIVQILRLPDGTVKILVEGSVRARIVEYI-----EREDFLEAITQVLPDP 137

Query: 133 DNDGVDRVAL----LEVFRNYLTVNN--------LDADWESIEEASNEILVNSLAMLSPF 180
             D V+  AL    +  F NY+ +N         + +  E   + ++ I  N    ++  
Sbjct: 138 TEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFSKLADVIAANLSIKVA-- 195

Query: 181 SEEEKQALLEAPDFRARAQTLIAIMK 206
              E+Q +LEA   + R + L+  M+
Sbjct: 196 ---ERQKILEAVSVKERLEMLLVFME 218


>gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 499

 Score = 26.6 bits (57), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 128 DLAGNDNDGVDRVA-LLEVFRNYLTVNNLDADWESIEEASNEILVNSLAM 176
           D   + + GVD ++ LL V   +LT   + + W+SI+E   E ++  L +
Sbjct: 72  DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121


>gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 346

 Score = 24.6 bits (52), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)

Query: 3   IGNTIYKNREDLPCLLP---IFPLLGML---LLPGSRFSFSVFERRYIAMFDSVLAGDRL 56
           +G + YKN  D+  L+P   I P +G +   L P SR      +R++   F+SVL    L
Sbjct: 248 VGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQH---FNSVLG---L 301

Query: 57  IGLVQPAISGFLANSDNGLSQIGCI 81
              V  ++S  +   D+ L Q G I
Sbjct: 302 REYVSFSVSDEMMAPDSQLFQYGLI 326


>gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 461

 Score = 23.9 bits (50), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 113 QLNSWRCFYIAPFISDLAGNDND 135
           Q+ SW  + IAP++ D + N N 
Sbjct: 198 QVASWIAYKIAPYLGDRSENINS 220


>gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 492

 Score = 22.3 bits (46), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 6/15 (40%), Positives = 12/15 (80%)

Query: 99  VIGVCRFRLLEEAYQ 113
           +IG+CR ++  E+Y+
Sbjct: 47  IIGICRIKMTVESYR 61


>gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 357

 Score = 22.3 bits (46), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 34  FSFSVFERRYIAMFDSVLAGDRLIGL 59
           F+    ER+ +   ++V AGD ++GL
Sbjct: 162 FAVGAVERKELLSPENVCAGDLILGL 187


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.141    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,382
Number of Sequences: 1233
Number of extensions: 5268
Number of successful extensions: 16
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 8
length of query: 221
length of database: 328,796
effective HSP length: 71
effective length of query: 150
effective length of database: 241,253
effective search space: 36187950
effective search space used: 36187950
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 36 (18.5 bits)