HHsearch alignment for GI: 254780741 and conserved domain: COG3457
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism].
Probab=99.03 E-value=2.7e-08 Score=74.26 Aligned_cols=302 Identities=17% Similarity=0.157 Sum_probs=173.2
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC-CCHHHHHHHHHHCCEEEEECHH-HHH-HHHCCCCCCCEEE-CC
Q ss_conf 856897799999999999998533698699954105-9999999998518748980799-998-9873688010885-37
Q gi|254780741|r 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCF-AAWGMFDTLNQYMDGTTSSSLY-EVM-LGHEKFGGETHAY-NV 79 (367)
Q Consensus 4 TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN-~~~~il~~l~~~g~g~dv~S~~-E~~-la~~g~~~~~i~~-~~ 79 (367)
T Consensus 3 ~p~l~Idl~~ieeNak~~~~~a~~~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~~Llr~P 82 (353)
T COG3457 3 NPGLIIDLDKIEENAKVLQETAARYGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPGHLLRSP 82 (353)
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 87178768998876899999998739779998752058818999999658543430227889999975999675476265
Q ss_pred CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH-----
Q ss_conf 7780347886138868985672059999998612345--614899635774431012455786435742788887-----
Q gi|254780741|r 80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE----- 152 (367)
Q Consensus 80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~----- 152 (367)
T Consensus 83 ~~se--i~~vv~~~Dvs~~sel~~arqlse~A~~~Gk~h~VlLmVd~~--D-----lre----G~~~~~~~~l~~~V~eI 149 (353)
T COG3457 83 CMSE--IEDVVRKVDVSTVSELDTARQLSEAAVRMGKVHDVLLMVDYG--D-----LRE----GQWGFLIEDLEETVEEI 149 (353)
T ss_pred CHHH--HHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCEEEEEEEECC--C-----CCC----CCHHHHHHHHHHHHHHH
T ss_conf 2889--999987357689725899999999999827521699999835--6-----667----40244788889999999
Q ss_pred --HHHCCCEEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf --43149606653056566---6147899999999989865088750875337766644556807899999987542165
Q gi|254780741|r 153 --SEIKNVNGLMFHNNCEN---KSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSV 227 (367)
Q Consensus 153 --~~~~~i~Gih~H~gs~~---~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~ 227 (367)
T Consensus 150 ~~lkGi~~vGlgTnF~Cfg~v~PTp~n~~~ll~~~~~lE~~~Gi~l~~vsagnats~~--~L~~~~~~~-inh------- 219 (353)
T COG3457 150 QQLKGIHLVGLGTNFPCFGDVLPTPENLESLLQGKKKLEASSGIQLKQVSAGNATSLT--LLPMGSLPG-INH------- 219 (353)
T ss_pred HCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH--HHHCCCCCC-CCC-------
T ss_conf 6699835986311665456767884048999999999877329505881279862033--201455225-555-------
Q ss_pred EEEEEHHHH--------------CCCCCEEEEEEEEEEECCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 045300220--------------1457418887887863044---------33343333565656640013455300024
Q gi|254780741|r 228 QIYLEPGEA--------------IVTNTTTLNTTVLDISENI---------KNLVIVDSSVEAHVPDYLLYQESATIYPN 284 (367)
Q Consensus 228 ~l~iEPGR~--------------lv~~ag~lv~~V~~~K~~~---------~~~v~vd~g~~~~~~~~~~~~~~~~~~~~ 284 (367)
T Consensus 220 ---lriG~al~~g~~~~n~~~~~~e~da~~lesEIie~k~k~s~~ige~f~~~~~f~d~g~~~rAi~aig~~dv~~~~~s 296 (353)
T COG3457 220 ---LRIGEALTGGVTPTNQYIDWLEQDAMLLESEIIEVKDKPSYPIGEGFYRRSGFVDAGIRLRAIAAIGEQDVDVVNLS 296 (353)
T ss_pred ---CCCCCEEECCCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf ---44452145361020110230035221011245521578861205421356665442034788777655247767886
Q ss_pred CCCEEEEEECCCCCCCCEE-EECCCCCCCCCCCEEEEECCC-CHHHHHCCCC
Q ss_conf 7864599862333666455-213566778879899996887-0223243476
Q gi|254780741|r 285 TGPYTAMVCGRSCLAGDIF-GEFHFEKPVKIGDRISFEDVA-GYNINRKNWF 334 (367)
Q Consensus 285 ~~~~~~~v~G~~C~~~D~l-~~~~~~~~l~~GD~l~i~~~G-AY~~~~~~~F 334 (367)
T Consensus 297 piD~~i~ilgas---SDhvvld~~~q~~v~vgDvv~fr~~y~~l~~am~~~~ 345 (353)
T COG3457 297 PIDYGIDILGAS---SDHVVLDFRDQIFVTVGDVVRFRLIYQGLLEAMYSKK 345 (353)
T ss_pred CHHHHHHHHCCC---CCCEEEEECCCCCCEEEEEEEEEECCCCCHHHHCCCC
T ss_conf 276654453246---7718999605643224028999842111014430234