HHsearch alignment for GI: 254780741 and conserved domain: cd06811
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.19 E-value=1.9e-07 Score=68.73 Aligned_cols=289 Identities=15% Similarity=0.107 Sum_probs=170.3
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC-CCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEEC
Q ss_conf 88856897799999999999998533698699954105-9999999998518-74898079999898-736880108853
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCF-AAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAYN 78 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN-~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~~ 78 (367)
T Consensus 26 I~PdtYViDlD~v~~NAr~l~~~A~~~gi~Ly~MtKQ~GRNP~l~~~l~~~G~~g~VaVD~kEA~~l~~~gl~vghvGHL 105 (382)
T cd06811 26 IPPDTYVIDLDQIEENARLLAETAEKYGIELYFMTKQFGRNPFLARALLEAGIPGAVAVDFKEARALHEAGLPLGHVGHL 105 (382)
T ss_pred CCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCCC
T ss_conf 79886897589999999999999997396899996105899899999997399856896099999999859983441571
Q ss_pred CCCCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH---
Q ss_conf 777803478861388-68985672059999998612345--614899635774431012455786435742788887---
Q gi|254780741|r 79 VAYKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE--- 152 (367)
Q Consensus 79 ~~~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~--- 152 (367)
T Consensus 106 VQiP~~~v~~iv~~~PeviTVfS~ekA~eis~aA~~~g~~Q~illrV~-----~~~D~~Y~GQeg---Gf~l~eL~~v~~ 177 (382)
T cd06811 106 VQIPRHQVPAVLAMRPEVITVYSLEKAREISDAAVELGRVQDVLLRVY-----GDEDTLYPGQEG---GFPLEELPAVLA 177 (382)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEE-----CCCCCCCCCCCC---CEEHHHHHHHHH
T ss_conf 368576899999749978999209999999999998197332699996-----489846377537---754899999999
Q ss_pred ----HHHCCCEEE-EECCC---CCCCCH--HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ----431496066-53056---566614--78999999999898650887508753377666445568078999999875
Q gi|254780741|r 153 ----SEIKNVNGL-MFHNN---CENKSF--LCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFS 222 (367)
Q Consensus 153 ----~~~~~i~Gi-h~H~g---s~~~~~--~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~ 222 (367)
T Consensus 178 ~i~~l~gi~i~GvT~FPc~L~d~~~~~~~pT~N~~Tl~~A~~~L~~~G~~~~qvN~PSa-----------Ts~~t-lp~L 245 (382)
T cd06811 178 AIKALPGIRIAGLTSFPCFLYDEEQGDIAPTPNLFTLLKAKELLEKRGIEILQLNAPSA-----------TSCAT-LPLL 245 (382)
T ss_pred HHHHCCCCEEEEEECEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-----------CHHHH-HHHH
T ss_conf 99728996796643200687747779511585299999999999975986279506851-----------14765-9999
Q ss_pred HHCCCEEEEEHHHHCCC-------------CCEEEEEEEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42165045300220145-------------74188878878630443334333356--5656640013455300024786
Q gi|254780741|r 223 EKYSVQIYLEPGEAIVT-------------NTTTLNTTVLDISENIKNLVIVDSSV--EAHVPDYLLYQESATIYPNTGP 287 (367)
Q Consensus 223 ~~~~~~l~iEPGR~lv~-------------~ag~lv~~V~~~K~~~~~~v~vd~g~--~~~~~~~~~~~~~~~~~~~~~~ 287 (367)
T Consensus 246 a~~G~Th-~EPGHaLTGTtP~ha~~d~pE~pA~vYvSEISH~~-~g~sY~-yGGG~YrR~hl~~ALV~~~------~~~~ 316 (382)
T cd06811 246 AEYGVTH-GEPGHALTGTTPLHAVGDQPEKPAMVYVSEVSHTF-GGHSYC-YGGGFYRRSHLKNALVGTD------PDDA 316 (382)
T ss_pred HHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEC-CCCEEE-ECCCCCCCCCCCCEEECCC------CCCH
T ss_conf 9848866-78874124788554567788761399998645742-895587-5886654666333255168------2322
Q ss_pred EEEEEECCCCCCCCEEEECCCCCCCCCCCEEEE
Q ss_conf 459986233366645521356677887989999
Q gi|254780741|r 288 YTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISF 320 (367)
Q Consensus 288 ~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i 320 (367)
T Consensus 317 ~~~~v~~~~~~sIDYy~~l~-~~~~~vGdtVi~ 348 (382)
T cd06811 317 SAHRAELLDPENIDYYGTLD-GPEFAVGDTVIM 348 (382)
T ss_pred HHEECCCCCCCCEEEEEECC-CCCCCCCCEEEE
T ss_conf 11323579977620677528-987898880899